Citrus Sinensis ID: 022791

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
Protein Sequence
MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Secondary Structure (PSIPRED)
cHHHHHHHHccccEEEEEEcccHHHcccccHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHcccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccEEEEEcccHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEEEEEcHHHcccccHHHHHHHHHEEEHHHEEEEEcccccccccEEEccHHHHcccccccccHHcccccccccEEEccccccccHHHHHHHHHHccccccHEHHHHHcHHcccccccccccccccEEEEcccHHHHHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIAcgfdvtktfifsdfdyvggafYKNMVKVAKCVTYNKVVGifgftgedhigkvsfppvqavpsfpssfphlfsgkdhlrclipcaidqdpyfrmtrdvaprigyhkpaliessffpalqgetgkmsasdpnsaiyvTDSAKAIKNKINKYAFSGGQESVELHRKLGanlevdipVKYLSFFLEDDAELEHIKKeygaggmltGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMavrplpnmfd
Flexible Loop (DISEMBL)
mftkylqdafkvplviqltddeKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGEtgkmsasdpnsAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEygaggmltgEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Low Complexity Region (SEG)
MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVpsfpssfphlfsGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSakaiknkinkYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Disordered region (IsUnstruct)
***KYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPAL***************IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV********
Disordered Region (DISOPRED)
MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKV*********DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPA***************AIYVTDSAKAIKNKINKYAF*******ELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP****
Disordered Region (DISEMBL)
MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG*********PNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Disordered Region (DISPRO)
MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG*********PNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	292	2.2.26 [Sep-21-2011]
Q5R4J1	472	Tryptophan--tRNA ligase,	yes	no	0.982	0.608	0.626	1e-108
P23381	471	Tryptophan--tRNA ligase,	yes	no	0.982	0.609	0.626	1e-108
P23612	475	Tryptophan--tRNA ligase,	yes	no	0.982	0.604	0.633	1e-108
P17248	476	Tryptophan--tRNA ligase,	no	no	0.982	0.602	0.626	1e-107
Q6P7B0	481	Tryptophan--tRNA ligase,	yes	no	0.982	0.596	0.633	1e-107
P32921	481	Tryptophan--tRNA ligase,	yes	no	0.982	0.596	0.622	1e-106
Q55DZ8	400	Tryptophan--tRNA ligase,	yes	no	0.976	0.712	0.562	9e-96
Q09692	395	Tryptophan--tRNA ligase,	yes	no	0.965	0.713	0.572	3e-92
Q12109	432	Tryptophan--tRNA ligase,	yes	no	0.982	0.664	0.531	1e-83
O96771	385	Tryptophan--tRNA ligase O	yes	no	0.958	0.727	0.443	4e-68

>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2 SV=2

 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/289 (62%), Positives = 229/289 (79%), Gaps = 2/289 (0%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct: 179 IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSD 238

Query: 61  FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
            DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F
Sbjct: 239 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 298

Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct: 299 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 358

Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct: 359 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 418

Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 419 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 467

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.
Pongo abelii (taxid: 9601)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2

>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1 SV=2

 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/289 (62%), Positives = 229/289 (79%), Gaps = 2/289 (0%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct: 178 IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSD 237

Query: 61  FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
            DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F
Sbjct: 238 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 297

Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct: 298 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 357

Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct: 358 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 417

Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 418 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466

Isoform 1, isoform 2 and T1-TrpRS have aminoacylation activity while T2-TrpRS lacks it. Isoform 2, T1-TrpRS and T2-TrpRS possess angiostatic activity whereas isoform 1 lacks it. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus GN=WARS PE=2 SV=3

 Score =  390 bits (1002), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/289 (63%), Positives = 228/289 (78%), Gaps = 2/289 (0%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLV+Q++DDEK +WK+L++E+      ENAKDIIACGFDV KTFIFSD
Sbjct: 182 IFTKWLQDVFDVPLVVQMSDDEKYLWKDLTLEQVYGYTLENAKDIIACGFDVNKTFIFSD 241

Query: 61  FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
            DY+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F
Sbjct: 242 LDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 301

Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
            G+  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct: 302 HGQADIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 361

Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct: 362 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 421

Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           K+Y +G MLTGE+K+ L  VL  LV  HQ  R  VTDEMV  FM  R L
Sbjct: 422 KDYSSGAMLTGELKKELIDVLQPLVAEHQARRKEVTDEMVKEFMTPRQL 470

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Oryctolagus cuniculus (taxid: 9986)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|P17248|SYWC_BOVIN Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus GN=WARS PE=1 SV=3

 Score =  388 bits (996), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/289 (62%), Positives = 230/289 (79%), Gaps = 2/289 (0%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct: 183 IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDIIACGFDINKTFIFSD 242

Query: 61  FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
            DY+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F
Sbjct: 243 LDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 302

Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct: 303 RDRTDVQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 362

Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+AK IK K+NK+AFSGG+++VE HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct: 363 SIFLTDTAKQIKTKVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 422

Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           ++Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 423 RDYTSGAMLTGELKKELIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 471

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars PE=1 SV=2

 Score =  387 bits (993), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/289 (63%), Positives = 229/289 (79%), Gaps = 2/289 (0%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ++DDEK +WK+L++E++     ENAKDIIACGFDV KTFIFSD
Sbjct: 182 IFTKWLQDVFDVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDVNKTFIFSD 241

Query: 61  FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
            +Y+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP VQA PSF +SFP +F
Sbjct: 242 LEYMGQSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIF 301

Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPNS
Sbjct: 302 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNS 361

Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+AK IK+K+NK+AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+
Sbjct: 362 SIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIR 421

Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           K+Y +G MLTGE+K+ L  VL  L+  HQ  R AVT+E V  FMA R L
Sbjct: 422 KDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQL 470

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1 SV=2

 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/289 (62%), Positives = 228/289 (78%), Gaps = 2/289 (0%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ++DDEK +WK+L++E++     ENAKDIIACGFD+ KTFIFSD
Sbjct: 182 IFTKWLQDVFNVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDINKTFIFSD 241

Query: 61  FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
            +Y+G +  FY+N+VK+ K VT+N+V GIFGFT  D IGK+SFP VQA PSF +SFP +F
Sbjct: 242 LEYMGQSPGFYRNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIF 301

Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPNS
Sbjct: 302 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNS 361

Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+AK IK+K+NK+AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+
Sbjct: 362 SIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQIR 421

Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           K+Y +G MLTGE+K+ L  VL  L+  HQ  R AVT+E V  FM  R L
Sbjct: 422 KDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMTPRQL 470

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q55DZ8|SYWC_DICDI Tryptophan--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=trpS PE=3 SV=1

 Score =  350 bits (897), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 163/290 (56%), Positives = 214/290 (73%), Gaps = 5/290 (1%)

Query: 2   FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 61
           FTKYLQDAF VPLV+Q+T+DEK +WK++++EES +    N KDIIA GFD+ KTFIFS+ 
Sbjct: 110 FTKYLQDAFNVPLVVQMTNDEKFLWKDMTLEESIKFTHNNVKDIIALGFDIQKTFIFSNL 169

Query: 62  DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 121
           +Y+    Y N++K+A+CV  N++  IFGF   D IGK +FPPVQA P FP SFPH+F   
Sbjct: 170 EYIH-HLYPNVLKIARCVNLNQIQNIFGFKESDAIGKFTFPPVQAAPCFPDSFPHIFPLN 228

Query: 122 D----HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 177
           D    ++RCLIPCAIDQDPYFRMTRD+A RIG+ KPALI S FFPALQG   KMSASD N
Sbjct: 229 DPEIKNIRCLIPCAIDQDPYFRMTRDIAHRIGHQKPALIHSKFFPALQGHNTKMSASDTN 288

Query: 178 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 237
           SA+Y++D+   +K+KI K+AFSGG  + E   K GA+L VDI  +YL+F LEDD +L+ I
Sbjct: 289 SAVYLSDTPDQVKDKIKKHAFSGGGATKEEQEKNGADLSVDITYEYLTFMLEDDEQLKDI 348

Query: 238 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
              Y  G M+TGE+KQ L  ++ +++ RH+ ARA +TDE++  FM++R L
Sbjct: 349 AHRYSTGKMMTGEIKQILIDLMNKIIIRHKEARAKITDEVLSTFMSIRKL 398

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q09692|SYWC_SCHPO Tryptophan--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wrs1 PE=1 SV=1

 Score =  338 bits (867), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 162/283 (57%), Positives = 210/283 (74%), Gaps = 1/283 (0%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFS 59
           MF K+LQD F+VPLVIQLTDDEK ++K  +S+E+ QR ARENAKDIIA GFD  KTFIF 
Sbjct: 105 MFCKWLQDVFQVPLVIQLTDDEKFLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFM 164

Query: 60  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 119
           +  YVGGAFY+N+V++AKC+T N+    FGFT  D IGK+ F  +QA PSF SSFPH+F+
Sbjct: 165 NSTYVGGAFYQNVVRIAKCITANQSKACFGFTDSDSIGKIHFASIQAAPSFSSSFPHIFN 224

Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
           G   + CLIPCAIDQDPYFR+TRDV+ R+ + KPAL+ S FFPALQG   KMSAS  +SA
Sbjct: 225 GAKDIPCLIPCAIDQDPYFRLTRDVSGRLKFKKPALLHSRFFPALQGPQSKMSASKDSSA 284

Query: 180 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239
           I++TD+   IKNKIN++AFSGG  ++E+HR+ G N +VD+  +YLSFFL+DD +L+ +  
Sbjct: 285 IFMTDTPNKIKNKINRHAFSGGGATIEIHREKGGNPDVDVAYQYLSFFLDDDEKLKQLYN 344

Query: 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM 282
            Y AG + TGE+K    K+L + V   Q AR+ V +  +D FM
Sbjct: 345 TYKAGTLSTGEMKGECIKLLQQFVSDFQAARSKVDEATLDMFM 387

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q12109|SYWC_YEAST Tryptophan--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WRS1 PE=1 SV=1

 Score =  309 bits (792), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 153/288 (53%), Positives = 203/288 (70%), Gaps = 1/288 (0%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFS 59
           +FTK+LQ+ F VPLVI+LTDDEK ++K+ L++ + +  ARENAKDIIA GFD   TFIFS
Sbjct: 125 VFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFS 184

Query: 60  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 119
           D  Y+GGAFY+ +V+V++ +T +    +FGF   D IGK  F  +Q   +FPSSFP++  
Sbjct: 185 DLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLG 244

Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
             D   CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD  +A
Sbjct: 245 LPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTA 304

Query: 180 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239
           I++TD+ K I+ KINKYAFSGGQ S +LHR+LG N +VD+  +YLSFF +DD  L+    
Sbjct: 305 IFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYD 364

Query: 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           +Y +G +L+GE+K+   + L E V+  Q  RA V +E +D FM    L
Sbjct: 365 KYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|O96771|SYW_ENCCU Tryptophan--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU11_0530 PE=1 SV=2

 Score =  258 bits (659), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 126/284 (44%), Positives = 190/284 (66%), Gaps = 4/284 (1%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +  KY+QDAFK+ LVIQ+TDDEK +WK++ +E++    REN KDI+A GFD   T+IFS+
Sbjct: 103 LLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVALGFDPKLTYIFSN 162

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
            +     F +N++K++K +  N+ + +FGF    +IG+V FP  +  P F SSF   F G
Sbjct: 163 VE-ASHHFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFR--FIG 219

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
           K  + CL+P A+DQDP+FR+ RD A  +G  KP+ I  S  P L+G   KMSASDPNS+I
Sbjct: 220 KGAM-CLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSI 278

Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
           Y+ D+   I+ KI  YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE  +  
Sbjct: 279 YLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSG 338

Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 284
           Y  G + + E+K++   V+ E V R+Q +R  VTD+ + AF+ +
Sbjct: 339 YIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDI 382

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
449449024	405	PREDICTED: tryptophan--tRNA ligase, cyto	1.0	0.720	0.931	1e-160
225446410	399	PREDICTED: tryptophanyl-tRNA synthetase,	1.0	0.731	0.914	1e-157
147832996	399	hypothetical protein VITISV_027725 [Viti	1.0	0.731	0.910	1e-157
297828964	402	tRNA synthetase class I family protein [	1.0	0.726	0.900	1e-156
224102881	404	predicted protein [Populus trichocarpa]	1.0	0.722	0.890	1e-154
255578670	405	tryptophanyl-tRNA synthetase, putative [	1.0	0.720	0.880	1e-153
15229319	402	tryptophanyl-tRNA synthetase [Arabidopsi	1.0	0.726	0.883	1e-152
358344209	401	Tryptophanyl-tRNA synthetase [Medicago t	1.0	0.728	0.869	1e-152
42572249	402	tryptophanyl-tRNA synthetase [Arabidopsi	1.0	0.726	0.876	1e-151
449523764	389	PREDICTED: tryptophan--tRNA ligase, cyto	0.945	0.709	0.927	1e-150

>gi|449449024|ref|XP_004142265.1| PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like [Cucumis sativus]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/292 (93%), Positives = 282/292 (96%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDV+KTFIFSD
Sbjct: 114 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVSKTFIFSD 173

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
           FDY+GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG
Sbjct: 174 FDYIGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 233

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
           KD LRCLIPCAIDQDPYFRMTRDVAPR+GYHKPALIESSFFPALQGETGKMSASDPNSAI
Sbjct: 234 KDDLRCLIPCAIDQDPYFRMTRDVAPRLGYHKPALIESSFFPALQGETGKMSASDPNSAI 293

Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
           YVTDSAK IKNKINKYAFSGGQ+S+E HR  GANLEVDIP KYL+FFL+DDAELEHI KE
Sbjct: 294 YVTDSAKDIKNKINKYAFSGGQDSIEKHRLYGANLEVDIPTKYLNFFLDDDAELEHITKE 353

Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 292
           YGAG MLTGEVKQRL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLPNMFD
Sbjct: 354 YGAGRMLTGEVKQRLIQVLTEMVERHRRARAAVTDEMVDAFMAVRPLPNMFD 405

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446410|ref|XP_002275626.1| PREDICTED: tryptophanyl-tRNA synthetase, cytoplasmic [Vitis vinifera] gi|302143316|emb|CBI21877.3| unnamed protein product [Vitis vinifera]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 267/292 (91%), Positives = 280/292 (95%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD+++TFIFSD
Sbjct: 108 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDISRTFIFSD 167

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
           FDYVGGAFYKNMVKV KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG
Sbjct: 168 FDYVGGAFYKNMVKVGKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 227

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
           KD LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES FFPALQGETGKMSASDPNSAI
Sbjct: 228 KDDLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESLFFPALQGETGKMSASDPNSAI 287

Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
           YVTDS K IKNKINKYAFSGGQ+S+E HRK GANLEVDIP+KYL FFLEDDAELE+I+ E
Sbjct: 288 YVTDSGKDIKNKINKYAFSGGQDSIENHRKYGANLEVDIPIKYLGFFLEDDAELEYIRTE 347

Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 292
           YGAG MLTG+VK+RL +VLTELVERH+ ARAAVTDEMVDAFMAVRPLPNMF+
Sbjct: 348 YGAGRMLTGDVKKRLIEVLTELVERHRRARAAVTDEMVDAFMAVRPLPNMFN 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832996|emb|CAN66126.1| hypothetical protein VITISV_027725 [Vitis vinifera]

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 266/292 (91%), Positives = 279/292 (95%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD+++TFIFSD
Sbjct: 108 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDISRTFIFSD 167

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
           FDYVGGAFYKNMVKV KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG
Sbjct: 168 FDYVGGAFYKNMVKVGKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 227

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
           KD LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIE  FFPALQGETGKMSASDPNSAI
Sbjct: 228 KDDLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIEXLFFPALQGETGKMSASDPNSAI 287

Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
           YVTDS K IKNKINKYAFSGGQ+S+E HRK GANLEVDIP+KYL FFLEDDAELE+I+ E
Sbjct: 288 YVTDSGKDIKNKINKYAFSGGQDSIENHRKYGANLEVDIPIKYLGFFLEDDAELEYIRTE 347

Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 292
           YGAG MLTG+VK+RL +VLTELVERH+ ARAAVTDEMVDAFMAVRPLPNMF+
Sbjct: 348 YGAGRMLTGDVKKRLIEVLTELVERHRRARAAVTDEMVDAFMAVRPLPNMFN 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828964|ref|XP_002882364.1| tRNA synthetase class I family protein [Arabidopsis lyrata subsp. lyrata] gi|297328204|gb|EFH58623.1| tRNA synthetase class I family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 263/292 (90%), Positives = 281/292 (96%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           MFTKYLQ+AFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD
Sbjct: 111 MFTKYLQEAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 170

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
           FDYVGGAFYKNMV+VAKCVT NK +GIFGF+GEDHIGK+SFPPVQAVPSFPSSFPHLF G
Sbjct: 171 FDYVGGAFYKNMVRVAKCVTLNKAMGIFGFSGEDHIGKLSFPPVQAVPSFPSSFPHLFPG 230

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
           KD+LRCLIPCAIDQDPYFRMTRDVAPR+GY KPALIESSFFPALQGE GKMSASDPNSAI
Sbjct: 231 KDNLRCLIPCAIDQDPYFRMTRDVAPRLGYSKPALIESSFFPALQGENGKMSASDPNSAI 290

Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
           YVTD+AK IKNKIN+YAFSGGQ+SVE HR+LGANLEVDIPVKYLSFFLEDD+ELEHIKKE
Sbjct: 291 YVTDTAKDIKNKINRYAFSGGQDSVEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKKE 350

Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 292
           YG G MLTGEVK+RL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLP+MF+
Sbjct: 351 YGEGRMLTGEVKKRLTEVLTEMVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102881|ref|XP_002312840.1| predicted protein [Populus trichocarpa] gi|118482985|gb|ABK93404.1| unknown [Populus trichocarpa] gi|222849248|gb|EEE86795.1| predicted protein [Populus trichocarpa]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 260/292 (89%), Positives = 277/292 (94%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           MFTKYLQD F+VPLVIQLTDDEKCMWKNL+VEESQRLARENAKDIIACGFD+T+TFIFSD
Sbjct: 113 MFTKYLQDVFRVPLVIQLTDDEKCMWKNLTVEESQRLARENAKDIIACGFDITRTFIFSD 172

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
           FDYVGGAFYKNMVKVAKCVT NKV GIFGF+GEDHIGK+SFPPVQAVPSFPSSFPHLFSG
Sbjct: 173 FDYVGGAFYKNMVKVAKCVTLNKVQGIFGFSGEDHIGKISFPPVQAVPSFPSSFPHLFSG 232

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
           KD LRCLIPCAIDQDPYFRMTRD APRIGYHKP+LIES+FFPALQGETGKMSASDPNSAI
Sbjct: 233 KDDLRCLIPCAIDQDPYFRMTRDAAPRIGYHKPSLIESTFFPALQGETGKMSASDPNSAI 292

Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
           YVTDSAK IK+KINKYAFSGGQ+SVE HR+LGANLEVDI VKYL+FFLEDDAELEHIKKE
Sbjct: 293 YVTDSAKVIKSKINKYAFSGGQDSVEKHRQLGANLEVDISVKYLNFFLEDDAELEHIKKE 352

Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 292
           Y AG MLTGEVK RL  VL+E+VERH+ ARA+VTDE+VDAFMA RPLPNMFD
Sbjct: 353 YAAGRMLTGEVKGRLGSVLSEIVERHRAARASVTDEVVDAFMAARPLPNMFD 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578670|ref|XP_002530195.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] gi|223530288|gb|EEF32185.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 257/292 (88%), Positives = 279/292 (95%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           MFTKYLQ+AF+VPLVIQLTDDEKCMWKNLSVEES+RLARENA+DIIACGFDV++TFIF D
Sbjct: 114 MFTKYLQEAFRVPLVIQLTDDEKCMWKNLSVEESKRLARENARDIIACGFDVSRTFIFQD 173

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
           F+YV G+FY+NMVKV KCVTYNKVVGIFGFTGEDHIGKVSFP VQAVPSFPSSFPHLFSG
Sbjct: 174 FNYVAGSFYENMVKVEKCVTYNKVVGIFGFTGEDHIGKVSFPAVQAVPSFPSSFPHLFSG 233

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
           KD +RCLIPCAIDQDPYFRMTRDVAPR+G+HKP+LIES FFPALQGETGKMSASDPNSAI
Sbjct: 234 KDDIRCLIPCAIDQDPYFRMTRDVAPRLGFHKPSLIESLFFPALQGETGKMSASDPNSAI 293

Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
           Y+TDSAK IKNKINKYAFSGGQ+S+E HRK GANLEVDIPVKYL+FFLEDD ELEHIK E
Sbjct: 294 YLTDSAKEIKNKINKYAFSGGQDSLEKHRKYGANLEVDIPVKYLNFFLEDDDELEHIKTE 353

Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 292
           Y AG MLTGEVK+RLA+VLTE+VERH+VAR+AVTDEMVDAFMAVRPLPNMFD
Sbjct: 354 YAAGRMLTGEVKKRLAEVLTEIVERHRVARSAVTDEMVDAFMAVRPLPNMFD 405

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229319|ref|NP_187110.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|145331754|ref|NP_001078104.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|6175164|gb|AAF04890.1|AC011437_5 putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|19310593|gb|AAL85027.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|21436361|gb|AAM51350.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|110740619|dbj|BAE98413.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640582|gb|AEE74103.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640584|gb|AEE74105.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/292 (88%), Positives = 277/292 (94%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           MFTKYLQ+AFKVPLVIQLTDDEK +WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD
Sbjct: 111 MFTKYLQEAFKVPLVIQLTDDEKSIWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 170

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
           FDYVGGAFYKNMVKV KCVT NK +GIFGF+GED I K+SFPPVQAVPSFPSSFPHLF G
Sbjct: 171 FDYVGGAFYKNMVKVGKCVTLNKAMGIFGFSGEDPIAKLSFPPVQAVPSFPSSFPHLFPG 230

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
           KD+LRCLIPCAIDQDPYFRMTRDVAPR+GY KPALIES+FFPALQGE GKMSASDPNSAI
Sbjct: 231 KDNLRCLIPCAIDQDPYFRMTRDVAPRLGYSKPALIESTFFPALQGENGKMSASDPNSAI 290

Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
           YVTDSAK IKNKIN+YAFSGGQ+S+E HR+LGANLEVDIPVKYLSFFLEDD+ELEHIKKE
Sbjct: 291 YVTDSAKDIKNKINRYAFSGGQDSIEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKKE 350

Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 292
           YG G MLTGEVK+RL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLP+MF+
Sbjct: 351 YGEGRMLTGEVKKRLTEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344209|ref|XP_003636184.1| Tryptophanyl-tRNA synthetase [Medicago truncatula] gi|355502119|gb|AES83322.1| Tryptophanyl-tRNA synthetase [Medicago truncatula]

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 254/292 (86%), Positives = 279/292 (95%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           MFTKYLQ+AFKVPLVIQLTDDEK +WKNL++EES+RLARENAKDIIACGFDV+KTFIFSD
Sbjct: 110 MFTKYLQEAFKVPLVIQLTDDEKFLWKNLTIEESRRLARENAKDIIACGFDVSKTFIFSD 169

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
           FDYVGGAFY+NMV++ K VTYN+VVGIFGF GEDHIGKVSFPPVQA PSFPSSFPHLF G
Sbjct: 170 FDYVGGAFYRNMVQIGKRVTYNQVVGIFGFIGEDHIGKVSFPPVQAAPSFPSSFPHLFEG 229

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
           K +LRCLIPCAIDQDPYFRMTRDVAP+IGY+KPALIESSFFPALQGETGKMSASDPNSAI
Sbjct: 230 KGNLRCLIPCAIDQDPYFRMTRDVAPKIGYNKPALIESSFFPALQGETGKMSASDPNSAI 289

Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
           YVTDSAK IKNK+N+YAFSGGQ+S+E HR+LGANLEVDIP+KYLSFFLEDDAELEHIKKE
Sbjct: 290 YVTDSAKDIKNKVNRYAFSGGQDSIEKHRQLGANLEVDIPIKYLSFFLEDDAELEHIKKE 349

Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 292
           YGAG MLTGEVKQRL +VLTE+VERH+ ARA VT++MVDAFMAVRPLP+MFD
Sbjct: 350 YGAGRMLTGEVKQRLIQVLTEIVERHRTARANVTEKMVDAFMAVRPLPHMFD 401

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572249|ref|NP_974219.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640583|gb|AEE74104.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 256/292 (87%), Positives = 276/292 (94%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           MFTKYLQ+AFKVPLVIQLTDDEK +WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD
Sbjct: 111 MFTKYLQEAFKVPLVIQLTDDEKSIWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 170

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
           FDYVGGAFYKNMVKV KCVT NK +GIFGF+GED I K+SFPPVQAVPSFPSSFPHLF G
Sbjct: 171 FDYVGGAFYKNMVKVGKCVTLNKAMGIFGFSGEDPIAKLSFPPVQAVPSFPSSFPHLFPG 230

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
           KD+LRCLIPCAIDQDPYFRMTRDVAPR+GY KPALIES+FFPALQ + GKMSASDPNSAI
Sbjct: 231 KDNLRCLIPCAIDQDPYFRMTRDVAPRLGYSKPALIESTFFPALQAKNGKMSASDPNSAI 290

Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
           YVTDSAK IKNKIN+YAFSGGQ+S+E HR+LGANLEVDIPVKYLSFFLEDD+ELEHIKKE
Sbjct: 291 YVTDSAKDIKNKINRYAFSGGQDSIEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKKE 350

Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 292
           YG G MLTGEVK+RL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLP+MF+
Sbjct: 351 YGEGRMLTGEVKKRLTEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523764|ref|XP_004168893.1| PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like, partial [Cucumis sativus]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 256/276 (92%), Positives = 266/276 (96%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDV+KTFIFSD
Sbjct: 114 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVSKTFIFSD 173

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
           FDY+GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG
Sbjct: 174 FDYIGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 233

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
           KD LRCLIPCAIDQDPYFRMTRDVAPR+GYHKPALIESSFFPALQGETGKMSASDPNSAI
Sbjct: 234 KDDLRCLIPCAIDQDPYFRMTRDVAPRLGYHKPALIESSFFPALQGETGKMSASDPNSAI 293

Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
           YVTDSAK IKNKINKYAFSGGQ+S+E HR  GANLEVDIP KYL+FFL+DDAELEHI KE
Sbjct: 294 YVTDSAKDIKNKINKYAFSGGQDSIEKHRLYGANLEVDIPTKYLNFFLDDDAELEHITKE 353

Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE 276
           YGAG MLTGEVKQRL +VLTE+VERH+ ARAAVTDE
Sbjct: 354 YGAGRMLTGEVKQRLIQVLTEMVERHRRARAAVTDE 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
TAIR|locus:2084993	402	AT3G04600 [Arabidopsis thalian	1.0	0.726	0.818	9.9e-126
UNIPROTKB|F1SAP4	482	WARS "Uncharacterized protein"	1.0	0.605	0.578	2.5e-88
UNIPROTKB|P23381	471	WARS "Tryptophan--tRNA ligase,	0.982	0.609	0.577	5.3e-88
UNIPROTKB|E2RGG9	476	WARS "Uncharacterized protein"	0.982	0.602	0.577	1.1e-87
UNIPROTKB|P17248	476	WARS "Tryptophan--tRNA ligase,	0.982	0.602	0.577	1.8e-87
RGD|1308278	481	Wars "tryptophanyl-tRNA synthe	0.982	0.596	0.584	6e-87
UNIPROTKB|Q6P7B0	481	Wars "Tryptophan--tRNA ligase,	0.982	0.596	0.584	6e-87
UNIPROTKB|E1C2Z5	473	WARS "Uncharacterized protein"	0.982	0.606	0.567	2.6e-86
MGI|MGI:104630	481	Wars "tryptophanyl-tRNA synthe	0.982	0.596	0.574	3.3e-86
ZFIN|ZDB-GENE-040426-1742	463	wars "tryptophanyl-tRNA synthe	0.982	0.619	0.574	8.9e-86

TAIR|locus:2084993 AT3G04600 [Arabidopsis thaliana (taxid:3702)]

 Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
 Identities = 239/292 (81%), Positives = 257/292 (88%)

Query:     1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
             MFTKYLQ+AFKVPLVIQLTDDEK +WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD
Sbjct:   111 MFTKYLQEAFKVPLVIQLTDDEKSIWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 170

Query:    61 FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXG 120
             FDYVGGAFYKNMVKV KCVT NK +GIFGF+GED I K+SFPPVQAV            G
Sbjct:   171 FDYVGGAFYKNMVKVGKCVTLNKAMGIFGFSGEDPIAKLSFPPVQAVPSFPSSFPHLFPG 230

Query:   121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
             KD+LRCLIPCAIDQDPYFRMTRDVAPR+GY KPALIES+FFPALQGE GKMSASDPNSAI
Sbjct:   231 KDNLRCLIPCAIDQDPYFRMTRDVAPRLGYSKPALIESTFFPALQGENGKMSASDPNSAI 290

Query:   181 YVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
             YVTDS          YAFSGGQ+S+E HR+LGANLEVDIPVKYLSFFLEDD+ELEHIKKE
Sbjct:   291 YVTDSAKDIKNKINRYAFSGGQDSIEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKKE 350

Query:   241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 292
             YG G MLTGEVK+RL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLP+MF+
Sbjct:   351 YGEGRMLTGEVKKRLTEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

UNIPROTKB|F1SAP4 WARS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 170/294 (57%), Positives = 213/294 (72%)

Query:     1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
             +FTK+LQD F VPLVIQ+TDDEK +WK L++E++   A ENAKDIIACGFDV KTFIFSD
Sbjct:   183 IFTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFIFSD 242

Query:    61 FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
              DY+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA            
Sbjct:   243 LDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQIF 302

Query:   119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
               +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct:   303 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 362

Query:   179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
             +I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD  LE I+
Sbjct:   363 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQIR 422

Query:   239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 292
             K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L   F+
Sbjct:   423 KDYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDEVVKEFMTPRKLSYDFE 476

GO:0045765 "regulation of angiogenesis" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

UNIPROTKB|P23381 WARS "Tryptophan--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 167/289 (57%), Positives = 212/289 (73%)

Query:     1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
             +FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct:   178 IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSD 237

Query:    61 FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
              DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA            
Sbjct:   238 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 297

Query:   119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
               +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct:   298 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 357

Query:   179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
             +I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct:   358 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 417

Query:   239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
             K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct:   418 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466

GO:0001525 "angiogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=NAS;TAS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=NAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0045765 "regulation of angiogenesis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006412 "translation" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|E2RGG9 WARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 167/289 (57%), Positives = 213/289 (73%)

Query:     1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
             +FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct:   183 IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDIIACGFDIKKTFIFSD 242

Query:    61 FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
              DY+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA            
Sbjct:   243 LDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDSIGKISFPAIQAAPSFSNSFPQIF 302

Query:   119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
               +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct:   303 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 362

Query:   179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
             +I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct:   363 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 422

Query:   239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
             K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct:   423 KDYTSGDMLTGELKKTLIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 471

GO:0045765 "regulation of angiogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

UNIPROTKB|P17248 WARS "Tryptophan--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 167/289 (57%), Positives = 213/289 (73%)

Query:     1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
             +FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct:   183 IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDIIACGFDINKTFIFSD 242

Query:    61 FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
              DY+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA            
Sbjct:   243 LDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 302

Query:   119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
               +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct:   303 RDRTDVQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 362

Query:   179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
             +I++TD+          +AFSGG+++VE HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct:   363 SIFLTDTAKQIKTKVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 422

Query:   239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
             ++Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct:   423 RDYTSGAMLTGELKKELIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 471

GO:0005737 "cytoplasm" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

RGD|1308278 Wars "tryptophanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 169/289 (58%), Positives = 211/289 (73%)

Query:     1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
             +FTK+LQD F VPLVIQ++DDEK +WK+L++E++     ENAKDIIACGFDV KTFIFSD
Sbjct:   182 IFTKWLQDVFDVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDVNKTFIFSD 241

Query:    61 FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
              +Y+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP VQA            
Sbjct:   242 LEYMGQSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIF 301

Query:   119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
               +  ++CLIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPNS
Sbjct:   302 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNS 361

Query:   179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
             +I++TD+          +AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+
Sbjct:   362 SIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIR 421

Query:   239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
             K+Y +G MLTGE+K+ L  VL  L+  HQ  R AVT+E V  FMA R L
Sbjct:   422 KDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQL 470

GO:0001525 "angiogenesis" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA;ISO

UNIPROTKB|Q6P7B0 Wars "Tryptophan--tRNA ligase, cytoplasmic" [Rattus norvegicus (taxid:10116)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 169/289 (58%), Positives = 211/289 (73%)

Query:     1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
             +FTK+LQD F VPLVIQ++DDEK +WK+L++E++     ENAKDIIACGFDV KTFIFSD
Sbjct:   182 IFTKWLQDVFDVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDVNKTFIFSD 241

Query:    61 FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
              +Y+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP VQA            
Sbjct:   242 LEYMGQSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIF 301

Query:   119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
               +  ++CLIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPNS
Sbjct:   302 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNS 361

Query:   179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
             +I++TD+          +AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+
Sbjct:   362 SIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIR 421

Query:   239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
             K+Y +G MLTGE+K+ L  VL  L+  HQ  R AVT+E V  FMA R L
Sbjct:   422 KDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQL 470

GO:0005524 "ATP binding" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA

UNIPROTKB|E1C2Z5 WARS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 164/289 (56%), Positives = 212/289 (73%)

Query:     1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
             +FTK+LQ+AF VPLVIQLTDDEK +WK+++ E++   A+ENA+DIIACGFDV KTFIFSD
Sbjct:   181 LFTKWLQEAFDVPLVIQLTDDEKYLWKDMTTEKAYEYAKENARDIIACGFDVNKTFIFSD 240

Query:    61 FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
              DY+G +  FYKN++KV K VT+N+V GIFGFT  D IGK+SFP +QA            
Sbjct:   241 LDYLGSSTGFYKNIIKVQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQIF 300

Query:   119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
              GK++++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S FFPALQG   KMSASD NS
Sbjct:   301 NGKENIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSVFFPALQGAQTKMSASDVNS 360

Query:   179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
             ++++ D+          +AFSGG++++E HRK G N +VD+   YL+FFLEDD +LE +K
Sbjct:   361 SVFLNDTPKQIKTKINKHAFSGGRDTIEEHRKYGGNCDVDVSFMYLTFFLEDDDKLEQLK 420

Query:   239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
             + Y +G +LTGE+K+ L + L  L+  HQ  R  +TDE+V  FM  R L
Sbjct:   421 QAYTSGELLTGELKKVLIETLQPLIAAHQERRKQITDEVVKQFMTPRKL 469

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA

MGI|MGI:104630 Wars "tryptophanyl-tRNA synthetase" [Mus musculus (taxid:10090)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 166/289 (57%), Positives = 210/289 (72%)

Query:     1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
             +FTK+LQD F VPLVIQ++DDEK +WK+L++E++     ENAKDIIACGFD+ KTFIFSD
Sbjct:   182 IFTKWLQDVFNVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDINKTFIFSD 241

Query:    61 FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
              +Y+G +  FY+N+VK+ K VT+N+V GIFGFT  D IGK+SFP VQA            
Sbjct:   242 LEYMGQSPGFYRNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIF 301

Query:   119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
               +  ++CLIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPNS
Sbjct:   302 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNS 361

Query:   179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
             +I++TD+          +AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+
Sbjct:   362 SIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQIR 421

Query:   239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
             K+Y +G MLTGE+K+ L  VL  L+  HQ  R AVT+E V  FM  R L
Sbjct:   422 KDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMTPRQL 470

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=ISO

ZFIN|ZDB-GENE-040426-1742 wars "tryptophanyl-tRNA synthetase" [Danio rerio (taxid:7955)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 166/289 (57%), Positives = 210/289 (72%)

Query:     1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
             +FTK+LQD F VPLVIQLTDDEK +WK+L++EE +R   ENA+DIIACGFDV KTFIFSD
Sbjct:   171 IFTKWLQDVFDVPLVIQLTDDEKYLWKDLTLEECRRFTVENARDIIACGFDVNKTFIFSD 230

Query:    61 FDYVGG--AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
              +Y+G   AFY+N+VKV K VT+N+V GIFGFT  D IGK+SFP +QA            
Sbjct:   231 LEYMGASPAFYRNVVKVQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 290

Query:   119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
               +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASD NS
Sbjct:   291 GDRKDVQCLIPCAIDQDPYFRMTRDVAPRIGYLKPALLHSTFFPALQGAQTKMSASDANS 350

Query:   179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
              I++TD+          +AFSGG++++E HRKLG + +VD+   YL+FFLEDD +LE I+
Sbjct:   351 TIFLTDTPKQIKNKVNKHAFSGGKDTIEEHRKLGGDPDVDVSFMYLTFFLEDDEQLEKIR 410

Query:   239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
             ++Y +G MLTGE+K+ L   L  ++  HQ  R  VTD++V  FM  R L
Sbjct:   411 QDYSSGAMLTGELKKSLIDTLQPIIAEHQEKRKHVTDDIVQQFMTPRKL 459

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P23381	SYWC_HUMAN	6, ., 1, ., 1, ., 2	0.6262	0.9828	0.6093	yes	no
Q12109	SYWC_YEAST	6, ., 1, ., 1, ., 2	0.5312	0.9828	0.6643	yes	no
Q55DZ8	SYWC_DICDI	6, ., 1, ., 1, ., 2	0.5620	0.9760	0.7125	yes	no
P23612	SYWC_RABIT	6, ., 1, ., 1, ., 2	0.6332	0.9828	0.6042	yes	no
Q09692	SYWC_SCHPO	6, ., 1, ., 1, ., 2	0.5724	0.9657	0.7139	yes	no
Q5R4J1	SYWC_PONAB	6, ., 1, ., 1, ., 2	0.6262	0.9828	0.6080	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.2	0.914
3rd Layer	6.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018613001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (399 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036385001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (489 aa)	•			•			•		0.964
	GSVIVG00017573001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (592 aa)	•			•			•		0.936
	GSVIVG00022843001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (447 aa)				•	•		•		0.923
	GSVIVG00027369001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (458 aa)				•		•	•		0.905
	GSVIVG00001918001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (1153 aa)				•			•		0.905
	GSVIVG00006903001	SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (407 aa)				•		•	•		0.897
	GSVIVG00000425001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (370 aa)				•			•		0.867
	GSVIVG00021859001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (1031 aa)				•			•		0.830
	GSVIVG00002292001	SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (797 aa)	•			•			•		0.819
	GSVIVG00035298001	SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (1025 aa)				•			•		0.815

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	292
PLN02486	383	PLN02486, PLN02486, aminoacyl-tRNA ligase	0.0
cd00806	280	cd00806, TrpRS_core, catalytic core domain of tryp	2e-86
TIGR00233	327	TIGR00233, trpS, tryptophanyl-tRNA synthetase	4e-86
PRK12285	368	PRK12285, PRK12285, tryptophanyl-tRNA synthetase;	3e-81
COG0180	314	COG0180, TrpS, Tryptophanyl-tRNA synthetase [Trans	3e-64
PRK08560	329	PRK08560, PRK08560, tyrosyl-tRNA synthetase; Valid	4e-19
pfam00579	291	pfam00579, tRNA-synt_1b, tRNA synthetases class I	2e-15
PRK00927	333	PRK00927, PRK00927, tryptophanyl-tRNA synthetase;	3e-12
PRK12282	333	PRK12282, PRK12282, tryptophanyl-tRNA synthetase I	1e-10
cd00805	269	cd00805, TyrRS_core, catalytic core domain of tyro	1e-06
PTZ00126	383	PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provi	5e-06

>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase

 Score =  604 bits (1560), Expect = 0.0
 Identities = 252/288 (87%), Positives = 271/288 (94%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           MFTKYLQDAFKVPLVIQLTDDEK +WKNLSVEESQRLARENAKDIIACGFDV +TFIFSD
Sbjct: 96  MFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSD 155

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
           FDYVGGAFYKNMVK+AKCVT N+V GIFGF+GED+IGK+SFP VQA PSFPSSFPHLF G
Sbjct: 156 FDYVGGAFYKNMVKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGG 215

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
           KD LRCLIPCAIDQDPYFRMTRDVAPR+GY+KPALIES FFPALQGE+GKMSASDPNSAI
Sbjct: 216 KDKLRCLIPCAIDQDPYFRMTRDVAPRLGYYKPALIESRFFPALQGESGKMSASDPNSAI 275

Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
           YVTD+ K IKNKINKYAFSGGQ++VE HR+LGANLEVDIP KYL+FFLEDDAELE IKKE
Sbjct: 276 YVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKE 335

Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP 288
           YG+G MLTGEVK+RL +VLTE+VERHQ ARAAVTDEMVDAFMAVRPLP
Sbjct: 336 YGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP 383

Length = 383

>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA synthetase

 Score =  259 bits (664), Expect = 2e-86
 Identities = 97/276 (35%), Positives = 134/276 (48%), Gaps = 31/276 (11%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
            F  +LQ+A    L   + D      K L  EE ++  RENAKD +ACG D  K+ IF  
Sbjct: 22  RFWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ 80

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT------GEDHIGKVSFPPVQAVPSFPSSF 114
            D      Y+    ++  VT+ ++  + GF          +IG +++P +QA        
Sbjct: 81  SDV--PEHYELAWLLSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAADILLYKA 138

Query: 115 PHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH------KPALIES--SFFPALQG 166
                      CL+P  IDQDP+  +TRD+A R          KPA + S  +F P LQG
Sbjct: 139 -----------CLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQG 187

Query: 167 ETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 226
            + KMS SDPN+AI++TDS K IK KI K A  GG+     HR+ G    V   V+  S 
Sbjct: 188 PSKKMSKSDPNNAIFLTDSPKEIKKKIMKAATDGGR---TEHRRDGGGPGVSNLVEIYSA 244

Query: 227 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 262
           F  DD E      EY +GG+  GE K+ LA+ + E 
Sbjct: 245 FFNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280

Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Length = 280

>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase

 Score =  260 bits (667), Expect = 4e-86
 Identities = 103/295 (34%), Positives = 151/295 (51%), Gaps = 28/295 (9%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAREN-AKDIIACGFDVTKTFIFS 59
           + TK+LQ  F V L I + D      K     ++ R ARE  A D +A G D  KTFIF 
Sbjct: 24  IQTKWLQ-QFGVELFICIADLHAITVKQTD-PDALRKAREELAADYLAVGLDPEKTFIFL 81

Query: 60  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDH-----IGKVSFPPVQAVPSFPSSF 114
             DY     Y+    ++  VT+ ++  +  F  +       IG +S+P +QA        
Sbjct: 82  QSDY--PEHYELAWLLSCQVTFGELKRMTQFKDKSQAENVPIGLLSYPVLQAADILLYQA 139

Query: 115 PHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIESSFFPALQGET 168
                       L+P  IDQD +  +TRD+A R        + KP  + S FFP L G +
Sbjct: 140 D-----------LVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLS 188

Query: 169 G-KMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF 227
           G KMS SDPNSAI++TD+ K IK KI K A  GG+ ++  HR+      + +  +YLSFF
Sbjct: 189 GKKMSKSDPNSAIFLTDTPKQIKKKIRKAATDGGRVTLFEHREKPGVPNLLVIYQYLSFF 248

Query: 228 LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM 282
           L DD +L+ I + Y +G +  GE K+ L +VL E ++  Q  RA + +E++D  +
Sbjct: 249 LIDDDKLKEIYEAYKSGKLGYGECKKALIEVLQEFLKEIQERRAEIAEEILDKIL 303

This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model [Protein synthesis, tRNA aminoacylation]. Length = 327

>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed

 Score =  249 bits (638), Expect = 3e-81
 Identities = 103/286 (36%), Positives = 157/286 (54%), Gaps = 19/286 (6%)

Query: 2   FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 61
             K+ Q+ F   + I + DDE    + LS EE++  A E   D+IA GFD  KT I+   
Sbjct: 89  ELKWHQE-FGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQS 147

Query: 62  DYVGGAFYKNM-VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
           +        ++  ++AK V ++++  I+GFTGE +IG + +P  QA        P L  G
Sbjct: 148 EN---IKVYDLAFELAKKVNFSELKAIYGFTGETNIGHIFYPATQAADIL---HPQLEEG 201

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRI----GYHKPALIESSFFPALQGETGKMSASDP 176
                 L+P  IDQDP+ R+TRD+A R+    G+ KP+     F P L G  GKMS+S P
Sbjct: 202 P--KPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKP 257

Query: 177 NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELE 235
            SAIY+TD  + +K KI K A +GG+ ++E  RKLG   +  +  + L + L EDD EL+
Sbjct: 258 ESAIYLTDDPETVKKKIMK-ALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELK 316

Query: 236 HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 281
            I +E  +G +L GE K+  A+ + E ++ HQ  R     E+++ +
Sbjct: 317 EIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEA-REILEKY 361

Length = 368

>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score =  203 bits (520), Expect = 3e-64
 Identities = 78/300 (26%), Positives = 126/300 (42%), Gaps = 35/300 (11%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEES-QRLARENAKDIIACGFDVTKTFIFS 59
           +    L           + D      +    EE  ++  RE A D +A G D  K+ IF 
Sbjct: 27  IRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFL 86

Query: 60  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED-------HIGKVSFPPVQAVPSFPS 112
             +       +    ++    + ++  +  F  +         IG +++P +QA      
Sbjct: 87  QSEV--PEHAELAWLLSCVTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQAADIL-- 142

Query: 113 SFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH------KPALI--ESSFFPAL 164
               L+        L+P   DQD +  +TRD+A R  +        P  +  + +  P L
Sbjct: 143 ----LYQA-----TLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGL 193

Query: 165 QGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 224
            G  GKMS SDPNSAI++ D  K I+ KI K A  G   ++  +RK G   EV    +  
Sbjct: 194 DGP-GKMSKSDPNSAIFLLDDPKTIRKKIKKAATDG--PTLIEYRK-GGKPEVCNLFEIY 249

Query: 225 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 284
           S F EDD+ LE I+ EY  G +  GE K+ LA+ + E ++  Q  R  + ++       +
Sbjct: 250 SAFFEDDSILE-IEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDP-AYLDDI 307

Length = 314

>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated

 Score = 85.3 bits (212), Expect = 4e-19
 Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 29/180 (16%)

Query: 30  SVEESQRLARENAKDIIACGFDVTKT-FIF-SDF----DYVGGAFYKNMVKVAKCVTYNK 83
            +EE +++A  N K   A G D  KT F+  S+F    +Y        ++K+AK  T  +
Sbjct: 80  DLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWL-----LVLKLAKNTTLAR 134

Query: 84  V---VGIFGFTGEDH-IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPYF 138
               + I G   E+  + K+ +P +Q    F            +L   I    +DQ    
Sbjct: 135 ARRSMTIMGRRMEEPDVSKLVYPLMQVADIF------------YLDVDIAVGGMDQRKIH 182

Query: 139 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 198
            + R+V P++GY KP  I +     L G   KMS S P SAI+V DS + I+ KI K A+
Sbjct: 183 MLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRKIKK-AY 241

Length = 329

>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y)

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 58/253 (22%), Positives = 96/253 (37%), Gaps = 35/253 (13%)

Query: 30  SVEESQRLAR---ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNKVV 85
           S E          ENAK  +ACG D  K+ I ++ D++    +  +  +      +  + 
Sbjct: 56  SEERKLLSREEVLENAKAQLACGLDPEKSEIVNNSDWLE---HLELAWLLRDLGNHFSLN 112

Query: 86  GIFGFTG----EDHIGKVSF-----PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 136
            +  F            +S      P +QA     +    L    D    L P   DQ  
Sbjct: 113 RMLQFKDVKKRLKQNPGISLGEFTYPLLQA-----ADILLLK--AD----LQPGGSDQWG 161

Query: 137 YFRMTRDVAPRIGYHKPALIESSFFPALQGETG--KMSASDPNSAIYVTDSAKAIKNKIN 194
           +  + RD+A R              P L G  G  KMS S  NSAI++ D  +++  KI 
Sbjct: 162 HIELGRDLARRFNKKVFKKPVGLTNPLLTGLDGGKKMSKSAGNSAIFLDDEKESVYKKI- 220

Query: 195 KYAFSGGQESVELHRKLGANLEVDIPV-KYLSFFLEDDA--ELEHIKKEYGAGGMLTGEV 251
           + A++      E+ + L    E+     + L  FL      E E +      G +  G++
Sbjct: 221 QKAYTDPDR--EVRKDLKLFTELSNEEIEILEAFLGKGPKREAEELLAREVTGLVHGGDL 278

Query: 252 KQRLAKVLTELVE 264
           K+  A+ +  L+E
Sbjct: 279 KKAAAEAVNALLE 291

Length = 291

>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed

 Score = 65.5 bits (161), Expect = 3e-12
 Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 14/149 (9%)

Query: 127 LIPCAIDQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPN 177
           L+P   DQ  +  +TRD+A R           P  LI    +    L G T KMS SDPN
Sbjct: 141 LVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPN 200

Query: 178 --SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELE 235
             + I + D  K I  KI K A +  +   E+   L    EV   +   S    +   +E
Sbjct: 201 DNNTINLLDDPKTIAKKIKK-AVTDSERLREIRYDLPNKPEVSNLLTIYSALSGE--SIE 257

Query: 236 HIKKEYGAGGMLTGEVKQRLAKVLTELVE 264
            ++ EY AGG   G+ K+ LA+ + E + 
Sbjct: 258 ELEAEYEAGGKGYGDFKKDLAEAVVEFLA 286

Length = 333

>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 15/147 (10%)

Query: 127 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE-------SSFFPALQGETGKMSASDPN 177
           L+P   DQ P    TR++  R    Y    L+E       +   P L G+  KMS S  N
Sbjct: 145 LVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGK-AKMSKSLGN 203

Query: 178 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 237
            AIY++D A  IK K+    ++   +   +  +    +E ++   YL  F  D AE+  +
Sbjct: 204 -AIYLSDDADTIKKKVMS-MYT---DPNHIRVEDPGKVEGNVVFTYLDAFDPDKAEVAEL 258

Query: 238 KKEYGAGGMLTGEVKQRLAKVLTELVE 264
           K  Y  GG+   + K+ L +VL EL+ 
Sbjct: 259 KAHYQRGGLGDVKCKRYLEEVLQELLA 285

Length = 333

>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA synthetase

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 22/122 (18%)

Query: 142 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKYAFSG 200
           RD+  ++GY K   + +     L G  GKMS S+ N+    V DS   +  KI   AF  
Sbjct: 169 RDLIRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDP 225

Query: 201 GQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 260
                               +K  +F   D  E+E +++E+  G  L  + K+ LA+ LT
Sbjct: 226 DVLEF---------------LKLFTFL--DYEEIEELEEEHAEGP-LPRDAKKALAEELT 267

Query: 261 EL 262
           +L
Sbjct: 268 KL 269

Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Length = 269

>gnl|CDD|240282 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 151 HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 195
            KP ++     P L     KMS SDPNSAI++ DS + +  KI K
Sbjct: 238 KKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMEDSEEDVNRKIKK 282

Length = 383

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	292
PLN02486	383	aminoacyl-tRNA ligase	100.0
COG0180	314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	100.0
PRK12285	368	tryptophanyl-tRNA synthetase; Reviewed	100.0
KOG2145	397	consensus Cytoplasmic tryptophanyl-tRNA synthetase	100.0
PRK00927	333	tryptophanyl-tRNA synthetase; Reviewed	100.0
PLN02886	389	aminoacyl-tRNA ligase	100.0
PRK12556	332	tryptophanyl-tRNA synthetase; Provisional	100.0
PRK12282	333	tryptophanyl-tRNA synthetase II; Reviewed	100.0
PRK12284	431	tryptophanyl-tRNA synthetase; Reviewed	100.0
TIGR00233	328	trpS tryptophanyl-tRNA synthetase. This model repr	100.0
PRK12283	398	tryptophanyl-tRNA synthetase; Reviewed	100.0
KOG2713	347	consensus Mitochondrial tryptophanyl-tRNA syntheta	100.0
PRK08560	329	tyrosyl-tRNA synthetase; Validated	100.0
cd00806	280	TrpRS_core catalytic core domain of tryptophanyl-t	100.0
PTZ00126	383	tyrosyl-tRNA synthetase; Provisional	100.0
PTZ00348	682	tyrosyl-tRNA synthetase; Provisional	100.0
PF00579	292	tRNA-synt_1b: tRNA synthetases class I (W and Y);	100.0
cd00805	269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	100.0
cd00395	273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	100.0
KOG2144	360	consensus Tyrosyl-tRNA synthetase, cytoplasmic [Tr	100.0
PTZ00348	682	tyrosyl-tRNA synthetase; Provisional	100.0
PRK05912	408	tyrosyl-tRNA synthetase; Validated	100.0
PRK13354	410	tyrosyl-tRNA synthetase; Provisional	100.0
TIGR00234	377	tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy	100.0
COG0162	401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	99.96
KOG2623	467	consensus Tyrosyl-tRNA synthetase [Translation, ri	99.31
cd00808	239	GluRS_core catalytic core domain of discriminating	98.87
cd00802	143	class_I_aaRS_core catalytic core domain of class I	98.61
cd00418	230	GlxRS_core catalytic core domain of glutamyl-tRNA	97.9
PRK00750	510	lysK lysyl-tRNA synthetase; Reviewed	97.61
COG0162	401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	96.66
cd00674	353	LysRS_core_class_I catalytic core domain of class	96.2
cd09287	240	GluRS_non_core catalytic core domain of non-discri	93.38
PRK01406	476	gltX glutamyl-tRNA synthetase; Reviewed	92.72
PRK05743	912	ileS isoleucyl-tRNA synthetase; Reviewed	92.03
TIGR00464	470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	91.7
cd00668	312	Ile_Leu_Val_MetRS_core catalytic core domain of is	91.5
PRK01611	507	argS arginyl-tRNA synthetase; Reviewed	91.31
cd00817	382	ValRS_core catalytic core domain of valyl-tRNA syn	90.18
cd00807	238	GlnRS_core catalytic core domain of glutaminyl-tRN	89.97
PRK00260	463	cysS cysteinyl-tRNA synthetase; Validated	89.65
cd00812	314	LeuRS_core catalytic core domain of leucyl-tRNA sy	88.95
TIGR00392	861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	88.6
PRK11893	511	methionyl-tRNA synthetase; Reviewed	88.28
cd00818	338	IleRS_core catalytic core domain of isoleucyl-tRNA	87.72
PRK14895	513	gltX glutamyl-tRNA synthetase; Provisional	87.7
TIGR00467	515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	87.42
TIGR00435	465	cysS cysteinyl-tRNA synthetase. This model finds t	87.26
TIGR00456	566	argS arginyl-tRNA synthetase. This model recognize	87.0
PRK13804	961	ileS isoleucyl-tRNA synthetase; Provisional	86.69
PRK04156	567	gltX glutamyl-tRNA synthetase; Provisional	86.59
PLN02843	974	isoleucyl-tRNA synthetase	85.13
PRK05729	874	valS valyl-tRNA synthetase; Reviewed	84.73
PLN02381	1066	valyl-tRNA synthetase	84.4
PRK13208	800	valS valyl-tRNA synthetase; Reviewed	83.97
TIGR00395	938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	83.68
PRK12418	384	cysteinyl-tRNA synthetase; Provisional	83.41
PF00133	601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	83.39
TIGR03838	272	queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe	82.67
PTZ00419	995	valyl-tRNA synthetase-like protein; Provisional	82.61
PLN02286	576	arginine-tRNA ligase	82.55
PRK14900	1052	valS valyl-tRNA synthetase; Provisional	82.5
PRK06039	975	ileS isoleucyl-tRNA synthetase; Reviewed	81.85
cd00672	213	CysRS_core catalytic core domain of cysteinyl tRNA	81.64
PLN02943	958	aminoacyl-tRNA ligase	81.61
PRK05710	299	glutamyl-Q tRNA(Asp) synthetase; Reviewed	81.57

>PLN02486 aminoacyl-tRNA ligase

Probab=100.00  E-value=1.3e-72  Score=534.11  Aligned_cols=288  Identities=88%  Similarity=1.356  Sum_probs=270.6

Q ss_pred             CchhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhhee
Q 022791            1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT   80 (292)
Q Consensus         1 ~~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t   80 (292)
                      ++++|||+++|+.++|+|||+|+++.+..+++++++++++++++|+|||+||+|++||.|++|...+||..+.+++|++|
T Consensus        96 ~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~~~~~~~~~~l~r~~t  175 (383)
T PLN02486         96 MFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVGGAFYKNMVKIAKCVT  175 (383)
T ss_pred             HHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHhHhHHHHHHHHHhhCc
Confidence            47899999889999999999999998669999999999999999999999999999998888764568999999999999


Q ss_pred             ecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccc
Q 022791           81 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF  160 (292)
Q Consensus        81 ~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~  160 (292)
                      ++++++.+|+.++.++|+++||+|||||+|+.+|+.++....+++|+||||.||+||+++|||+|+|||+.+|+.+++++
T Consensus       176 ~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia~r~~~~kp~~~~~~~  255 (383)
T PLN02486        176 LNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAPRLGYYKPALIESRF  255 (383)
T ss_pred             HHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHHHHhCCCCcceecccc
Confidence            99999999998888999999999999999988887665554568899999999999999999999999999999999999


Q ss_pred             cccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHHh
Q 022791          161 FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE  240 (292)
Q Consensus       161 lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~~  240 (292)
                      +|||+|+.+|||||+|||+|+|+|+|++|++||++|||||++.+.+++++.||||++|++|+|+.+|.++++++++++++
T Consensus       256 lp~L~g~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~~~eei~~~  335 (383)
T PLN02486        256 FPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKE  335 (383)
T ss_pred             ccCCCCCCCcCcCcCCCCeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCchHHHHHHHH
Confidence            99999988899999999999999999999999999999999999999999999999999999999997667889999999


Q ss_pred             hcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCCC
Q 022791          241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP  288 (292)
Q Consensus       241 y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~~  288 (292)
                      |.+|+++|++||+.|++.|+++|+|+|+|+++++++.|++++..+++|
T Consensus       336 y~~G~l~~ge~K~~lae~i~~~l~~~qerr~~~~~~~~~~~~~~~~~~  383 (383)
T PLN02486        336 YGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP  383 (383)
T ss_pred             hccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999999999999999999999999999988875

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.7e-72  Score=512.64  Aligned_cols=265  Identities=29%  Similarity=0.421  Sum_probs=235.6

Q ss_pred             hhh-HHhhcCcceEEEeeccccccccccCH-HHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHH
Q 022791            3 TKY-LQDAFKVPLVIQLTDDEKCMWKNLSV-EESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV   73 (292)
Q Consensus         3 ~~~-lQ~~~g~~~~I~iaD~hA~~~~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~   73 (292)
                      ..| +|+. +..++++|||+||+|.+..++ +.+++++++++++||||||||+|++||.||++++|    |++.   .++
T Consensus        29 ~~v~~q~~-~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e~~eLa~~l~~~~~~g  107 (314)
T COG0180          29 NWVLLQEE-YYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPEHAELAWLLSCVTNFG  107 (314)
T ss_pred             HHHHHhcc-cCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCchHHHHHHHHHHccCcHH
Confidence            345 5554 246677779999999853333 88999999999999999999999999999999987    4444   489


Q ss_pred             HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC----
Q 022791           74 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----  149 (292)
Q Consensus        74 ~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n----  149 (292)
                      +|+|+++||++..+.+  .+.++|++.||+||||        |||.|++   |+||||.||+||+|||||||+|||    
T Consensus       108 el~r~~~fKdk~~~~~--~~~~~Gl~~YPvlqAA--------DILl~~a---~~VPVG~DQ~qHleLtRDiA~rfn~~y~  174 (314)
T COG0180         108 ELERMTQFKDKSAKKG--ESIPIGLLTYPVLQAA--------DILLYQA---TLVPVGEDQDQHLELTRDIARRFNHLYG  174 (314)
T ss_pred             HHHhhcCcchhhhccc--ccccccchhccHHHHH--------HhhhccC---CeeccCCCchHHHHHHHHHHHHHHhhcC
Confidence            9999999999988764  4889999999999999        9999999   589999999999999999999999    


Q ss_pred             --CCCccchhcc--ccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhh
Q 022791          150 --YHKPALIESS--FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS  225 (292)
Q Consensus       150 --~~~p~~l~~~--~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~  225 (292)
                        +++|..+++.  +||||+|| +|||||+|||+|+|+|+|++|+|||++ |+||| .+..++++ ||+|++||+|.|+.
T Consensus       175 ~~f~~P~~~~~~~~~i~gL~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~~-~~td~-~~~~~~~~-~g~Pe~~~l~~~~~  250 (314)
T COG0180         175 EVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKIKK-AATDG-PTLIEYRK-GGKPEVCNLFEIYS  250 (314)
T ss_pred             CccCCccccccCCCcccCCCCC-CcccccCCCCeeeccCCHHHHHHHHHH-hccCC-CCccccCC-CCCCCcchHHHHHH
Confidence              7899998876  99999998 999999999999999999999999999 99999 44455555 99999999999999


Q ss_pred             hhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhcccC
Q 022791          226 FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  286 (292)
Q Consensus       226 ~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~~  286 (292)
                      +|.. +++.++++++|++|+++||+||+.|++.|+++|+|||+||++++++  +++.++..+.
T Consensus       251 ~~~~-~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~l~~il~~g~  312 (314)
T COG0180         251 AFFE-DDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAYLDDILRKGA  312 (314)
T ss_pred             HhcC-CCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhccC
Confidence            9964 5677799999999999999999999999999999999999999887  7999887653

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=1.1e-69  Score=512.84  Aligned_cols=274  Identities=37%  Similarity=0.613  Sum_probs=252.1

Q ss_pred             chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhheee
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY   81 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~   81 (292)
                      +++|||+ +|+.++|+||||||++++..+++++++++++++++|+|||+||+|++||.||++++  ++..+..+++.+|+
T Consensus        89 ~~~~lQ~-~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~~--~~~l~~~l~~~~t~  165 (368)
T PRK12285         89 ELKWHQE-FGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENIK--VYDLAFELAKKVNF  165 (368)
T ss_pred             HHHHHHh-cCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchHH--HHHHHHHHHhhCcH
Confidence            5788999 59999999999999998668999999999999999999999999999999999974  77788899999999


Q ss_pred             cceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCccc----CCCCccchh
Q 022791           82 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI----GYHKPALIE  157 (292)
Q Consensus        82 ~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~----n~~~p~~l~  157 (292)
                      +++++.+|++++.|+|+++||+|||||+|++++..  .+++   |+||||+||+||+||||++|+||    |+++|.+++
T Consensus       166 ~~l~r~~~f~~~~~~g~~~YP~lQaADil~~~~~~--~~~~---~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P~~l~  240 (368)
T PRK12285        166 SELKAIYGFTGETNIGHIFYPATQAADILHPQLEE--GPKP---TLVPVGIDQDPHIRLTRDIAERLHGGYGFIKPSSTY  240 (368)
T ss_pred             HHHHHhhCCCCCCchhhhhhhHHHHHHHHhhcccc--cCCc---eEEEeccchHHHHHHHHHHHHHHhhhcCCCCchhHh
Confidence            99999999888899999999999999444333321  2555   79999999999999999999999    889999999


Q ss_pred             ccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc-cChHHHHH
Q 022791          158 SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEH  236 (292)
Q Consensus       158 ~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~ee  236 (292)
                      ++++|||+|  +|||||+|+|+|+|+|+|++|++||++ |+||++.+.+++++.||||++|++++|+++|. .+++++++
T Consensus       241 ~~~lpgL~G--~KMSkS~~~s~I~L~D~p~~I~kKI~k-A~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~ee  317 (368)
T PRK12285        241 HKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKIMK-ALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKE  317 (368)
T ss_pred             hhcccCCCC--CcCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCCcccccccccCCCCCcchHHHHHHHHhcCCCccHHH
Confidence            999999999  699999999999999999999999999 99999999889999999999999999999987 46789999


Q ss_pred             HHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791          237 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  287 (292)
Q Consensus       237 l~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~  287 (292)
                      ++++|++|+++|++||+.|++.|+++|+|+|+|++++++ .|++++...++
T Consensus       318 i~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~~~-~~~~~~~~~~~  367 (368)
T PRK12285        318 IYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEARE-ILEKYLYDGKL  367 (368)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccC
Confidence            999999999999999999999999999999999999999 99999887654

>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.1e-68  Score=472.95  Aligned_cols=288  Identities=66%  Similarity=1.118  Sum_probs=281.1

Q ss_pred             CchhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccc-hhhhHhHHHhhhhe
Q 022791            1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKCV   79 (292)
Q Consensus         1 ~~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~-~~~~~~~~~l~r~~   79 (292)
                      +|+||||+.++++++|++.|.++++....+.++..+.+++++++++|||+||+||+||.+.++.+ +.++.++.++++.+
T Consensus       108 iftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfIFsn~~y~g~~~fy~nivki~k~v  187 (397)
T KOG2145|consen  108 IFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFIFSNLDYMGGPAFYENIVKISKCV  187 (397)
T ss_pred             HHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEEEechhhccCcHHHHHHHHHhhee
Confidence            58999999999999999999999998669999999999999999999999999999999999986 69999999999999


Q ss_pred             eecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcc
Q 022791           80 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS  159 (292)
Q Consensus        80 t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~  159 (292)
                      |+++++..+||+++.++|.+.+|..|||++|++|||.|+..+.|+||++|+.+||+|++++|||+|+|+|++||+.+++.
T Consensus       188 t~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDPyFRmtRDvA~rlg~~Kpali~st  267 (397)
T KOG2145|consen  188 TLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDPYFRMTRDVAPRLGYPKPALIHST  267 (397)
T ss_pred             chhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCChHHHhhhhhhhhhCCCCcceeehh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHH
Q 022791          160 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK  239 (292)
Q Consensus       160 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~  239 (292)
                      ++|.|+|.+.|||.|+|||+|||+|++++|++||.+|||+|++.++|+|++.||||++++.|+||++|.+++.++|+++.
T Consensus       268 ffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD~kLeq~r~  347 (397)
T KOG2145|consen  268 FFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDDDKLEQIRK  347 (397)
T ss_pred             hchhhhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988999999999


Q ss_pred             hhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCCC
Q 022791          240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP  288 (292)
Q Consensus       240 ~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~~  288 (292)
                      +|.+|+|..||+|+.+.+.|.++++.+|++|++++++.|++++..++++
T Consensus       348 ~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk~Vtde~ld~Fm~~r~l~  396 (397)
T KOG2145|consen  348 DYTSGEMLTGEMKKLCIEVLQEFVSRHQAARKEVTDETLDAFMDPRKLS  396 (397)
T ss_pred             hccccccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCcccCC
Confidence            9999999999999999999999999999999999999999999987765

>PRK00927 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=2.6e-67  Score=492.84  Aligned_cols=265  Identities=25%  Similarity=0.340  Sum_probs=238.4

Q ss_pred             hhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHH
Q 022791            3 TKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV   73 (292)
Q Consensus         3 ~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~   73 (292)
                      .+|  ||++  +.++|+||||||+|++ .+++++++++++++++|+|||+||+|++||.||+|++|    |.+.   .+.
T Consensus        24 ~~~~~lQ~~--~~~~~~IaD~ha~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~~~el~~~l~~~~~~~  100 (333)
T PRK00927         24 KNWVELQDE--YECFFCIADLHALTVP-QDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPEHAELAWILNCITPLG  100 (333)
T ss_pred             HHHHHHHhc--CCeEEEEecHHHHhCC-CCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCchhHHHHHHHHhhhhHH
Confidence            466  9995  5667888999999975 69999999999999999999999999999999999987    2222   479


Q ss_pred             HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC---
Q 022791           74 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY---  150 (292)
Q Consensus        74 ~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~---  150 (292)
                      +|+|++++++....  +.++.++|+++||+||||        |||.+++|   +||||.||+||+||||++|+|||+   
T Consensus       101 ~l~r~~~~k~~~~~--~~~~~~~g~~~YP~lQaa--------Dil~~~~d---ivpvG~DQ~~h~elaRdia~~~n~~~~  167 (333)
T PRK00927        101 ELERMTQFKDKSAK--QKENVSAGLFTYPVLMAA--------DILLYKAD---LVPVGEDQKQHLELTRDIARRFNNLYG  167 (333)
T ss_pred             HHHhhhhHHHHHhc--cCCCCCcHhhhcHHHHHH--------HHHhcCCC---EEeeccchHHHHHHHHHHHHHhhhhcc
Confidence            99999999987543  236789999999999999        99999995   899999999999999999999995   


Q ss_pred             ---CCccchh---ccccccccCCcccccccCCC--ceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccch
Q 022791          151 ---HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK  222 (292)
Q Consensus       151 ---~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~  222 (292)
                         ++|..++   +++||||+|+++|||||+|+  |+|+|+|+|++|++||++ |+||+..+.+++++.+++|+++++++
T Consensus       168 ~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~-a~td~~~~~~~~~~~~~~p~~~~l~~  246 (333)
T PRK00927        168 EVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKK-AVTDSERLREIRYDLPNKPEVSNLLT  246 (333)
T ss_pred             ccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHh-CCCCCCcccccccCCCCCCccccHHH
Confidence               5787665   38999999987799999986  899999999999999999 99999887777889999999999999


Q ss_pred             hhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhcccC
Q 022791          223 YLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  286 (292)
Q Consensus       223 ~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~~  286 (292)
                      |+++|+  +.++++++++|.+|+++|++||+.||+.|+++|+|+|+||++++++  +|+++|..|.
T Consensus       247 ~~~~~~--~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~~G~  310 (333)
T PRK00927        247 IYSALS--GESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILAEGA  310 (333)
T ss_pred             HHHHhC--CCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            999994  6789999999999999999999999999999999999999999976  8999998763

>PLN02886 aminoacyl-tRNA ligase

Probab=100.00  E-value=2.6e-66  Score=489.55  Aligned_cols=261  Identities=21%  Similarity=0.281  Sum_probs=230.3

Q ss_pred             hhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHH
Q 022791            3 TKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV   73 (292)
Q Consensus         3 ~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~   73 (292)
                      .+|  ||+  |+.++|+||||||+|. ..+++++++++++++++|+|||+||+|+.||.||++++|    |.+.   .++
T Consensus        69 ~~~v~lQ~--~~~~~~~IADlHAlt~-~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g  145 (389)
T PLN02886         69 KNWVALQE--TYDTFFCVVDLHAITL-PHDPRELGKATRSTAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIG  145 (389)
T ss_pred             HHHHHHhc--cCCEEEEEecHHHhhC-CCCHHHHHHHHHHHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHH
Confidence            356  998  5556778899999997 489999999999999999999999999999999999987    3333   378


Q ss_pred             HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC---
Q 022791           74 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY---  150 (292)
Q Consensus        74 ~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~---  150 (292)
                      +|+|++|||++.+..+ .++.++|+|+||+||||        |||+|++|   +||||+||+||+||||+||+|||+   
T Consensus       146 ~L~R~~q~K~k~~~~~-~~~~~~gll~YPvLqAA--------DILl~~a~---~VPVG~DQ~qH~eLtRdiA~rfN~~y~  213 (389)
T PLN02886        146 WLNKMIQFKEKSRKAG-DENVGVGLLTYPVLMAS--------DILLYQAD---LVPVGEDQKQHLELTRDIAERVNNLYG  213 (389)
T ss_pred             HHHhcchHHHHHHhcC-CCCCChHhhhChHHHHh--------hhhhcCCC---eEEEccchHHHHHHHHHHHHHHhhhcc
Confidence            9999999999877654 35689999999999999        99999996   899999999999999999999985   


Q ss_pred             ---------------CCccchh---ccccccccCCcccccccCCC--ceeEecCCHHHHHHHhhhccccCCcccHHHHHH
Q 022791          151 ---------------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRK  210 (292)
Q Consensus       151 ---------------~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~  210 (292)
                                     ++|..+.   +++||||+||++|||||+|+  |+|+|+|+|++|++||++ |+||+...++  ++
T Consensus       214 ~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~e~I~kKI~~-a~TD~~~~i~--~~  290 (389)
T PLN02886        214 GRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKR-CKTDSFPGLE--FD  290 (389)
T ss_pred             ccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCHHHHHHHHhc-CCCCCCCCcc--CC
Confidence                           3565554   46899999988899999985  899999999999999999 9999986543  56


Q ss_pred             hCCCccccccchhhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791          211 LGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  285 (292)
Q Consensus       211 ~~~~p~~~~~~~~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~  285 (292)
                      .+++|+++|++.+|..+  ++.++++++++|.  ++++++||+.|+++|+++|+|||+||+++.++  +|+++|..+
T Consensus       291 ~p~~p~v~nl~~i~~~~--~~~~~eei~~~~~--~~~~g~~K~~Lae~I~~~L~Pirer~~~l~~d~~~l~~iL~~G  363 (389)
T PLN02886        291 NPERPECNNLLSIYQLV--TGKTKEEVLAECG--DMRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPSYLDSVLKEG  363 (389)
T ss_pred             CCCCcccccHHHHHHHc--cCCCHHHHHHHhc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            77899999999999988  4678999999996  37999999999999999999999999999876  899999876

>PRK12556 tryptophanyl-tRNA synthetase; Provisional

Probab=100.00  E-value=4e-66  Score=483.34  Aligned_cols=258  Identities=17%  Similarity=0.235  Sum_probs=229.4

Q ss_pred             hHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHHHhhh
Q 022791            5 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVAK   77 (292)
Q Consensus         5 ~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~r   77 (292)
                      |+|+.+|+.++|+||||||+|. ..+++++++++++++++|+|||+||+|++||.||++++|    |.+.   .+++|+|
T Consensus        30 ~lq~~~~~~~~~~IADlHalt~-~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~~~eL~~il~~~t~~g~L~R  108 (332)
T PRK12556         30 QMAKNYEGKALYFIADYHALNA-VHDPEQFRSYTREVAATWLSLGLDPEDVIFYRQSDVPEIFELAWILSCLTPKGLMNR  108 (332)
T ss_pred             HHHHhcCCeEEEEEechhhccC-CCCHHHHHHHHHHHHHHHhheeecccceEEEECCCchHHHHHHHHHHccchHHHHHh
Confidence            3888889888888999999985 489999999999999999999999999999999999987    3333   3799999


Q ss_pred             heeecceeecc-----ccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC---
Q 022791           78 CVTYNKVVGIF-----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG---  149 (292)
Q Consensus        78 ~~t~~~~~~~~-----g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n---  149 (292)
                      ++|||++....     |+.++.++|+++||+||||        |||.|++|   +||||+||+||+||||++|+|||   
T Consensus       109 ~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAA--------DIl~~~~d---~VpvG~DQ~qhleLtRdiA~rfn~~y  177 (332)
T PRK12556        109 AHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAA--------DILLFQAT---HVPVGKDQIQHIEIARDIATYFNHTF  177 (332)
T ss_pred             ccHHHHHHhhhhhhccccCCCCcchhhhchHHHhh--------hhhhccCC---EEEeccccHHHHHHHHHHHHHHHHhc
Confidence            99999886532     2345679999999999999        99999995   89999999999999999999999   


Q ss_pred             ---CCCccch---hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchh
Q 022791          150 ---YHKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY  223 (292)
Q Consensus       150 ---~~~p~~l---~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~  223 (292)
                         +++|..+   +++++|||+|  +|||||++| +|+|+|+|++|++||++ |+||+...     +.+++|+++|+++|
T Consensus       178 g~~f~~P~~~~~~~~~~l~gLdg--~KMSKS~~n-~I~L~D~p~~I~kKI~k-a~Td~~~~-----~~~~~p~~~~l~~i  248 (332)
T PRK12556        178 GDTFTLPEYVIQEEGAILPGLDG--RKMSKSYGN-VIPLFAEQEKLRKLIFK-IKTDSSLP-----NEPKDPETSALFTI  248 (332)
T ss_pred             cccCCCceeccccccccccCCCC--CCCCCCCCC-cccccCCHHHHHHHHHH-hccCCCcc-----cCCCCcchhHHHHH
Confidence               5778666   5899999998  699999975 89999999999999999 99998642     35789999999999


Q ss_pred             hhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791          224 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  285 (292)
Q Consensus       224 l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~  285 (292)
                      +++|.+ ++++++++++|.+ +++|++||+.||+.|+++|+|||+||+++.++  +|+++|..|
T Consensus       249 ~~~~~~-~~~~eei~~~y~~-~~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~~~~il~~G  310 (332)
T PRK12556        249 YKEFAT-EEEVQSMREKYET-GIGWGDVKKELFRVVDRELAGPREKYAMYMNEPSLLDEALEKG  310 (332)
T ss_pred             HHHHCC-chhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            999863 3679999999986 69999999999999999999999999999976  899999876

>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed

Probab=100.00  E-value=4.7e-66  Score=483.32  Aligned_cols=263  Identities=27%  Similarity=0.367  Sum_probs=233.7

Q ss_pred             hHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhHh---HHHhhh
Q 022791            5 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYKN---MVKVAK   77 (292)
Q Consensus         5 ~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~~---~~~l~r   77 (292)
                      |||++ |+ ++|+||||||+|++..+++++++++++++++|+|||+||+|++||.||+|++|    |+|.+   +.++.|
T Consensus        29 ~lQ~~-~~-~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~e~~~l~~~l~~~~~~~~l~r  106 (333)
T PRK12282         29 ALQNE-HE-QFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFIQSQIPELAELTMYYMNLVTVARLER  106 (333)
T ss_pred             HHHhC-CC-EEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEECCcchHHHHHHHHHHhhchHHHHhh
Confidence            69997 44 68888999999974589999999999999999999999999999999999886    66664   679999


Q ss_pred             heeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC--CCccc
Q 022791           78 CVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--HKPAL  155 (292)
Q Consensus        78 ~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~--~~p~~  155 (292)
                      +++++++....|+.++.++|+++||+||||        |||.+++|   +||||+||+||+||||++|+|||+  .+|..
T Consensus       107 ~~~~k~~~~~~~~~~~~~~g~l~YP~lqaa--------DIl~~~~d---~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~  175 (333)
T PRK12282        107 NPTVKTEIAQKGFGRSIPAGFLTYPVSQAA--------DITAFKAT---LVPVGDDQLPMIEQTREIVRRFNSLYGTDVL  175 (333)
T ss_pred             chHHHHHHhccCCCCCCcchhhcchHHHHH--------HHHhhCCC---EEEeccccHHHHHHHHHHHHHHhhhcCCccc
Confidence            999998766555567889999999999999        99999995   899999999999999999999993  33332


Q ss_pred             h-------hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc
Q 022791          156 I-------ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL  228 (292)
Q Consensus       156 l-------~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~  228 (292)
                      +       .+++||||+|+ +|||||+++ +|+|+|+|++|++||++ |+||+..   .+++++++|+++++++|+++|.
T Consensus       176 ~~p~~~~~~~~~i~~L~g~-~KMSKS~~~-~I~L~D~pe~I~kKI~~-A~td~~~---~~~~~~~~~~~~~l~~~~~~f~  249 (333)
T PRK12282        176 VEPEALLPEAGRLPGLDGK-AKMSKSLGN-AIYLSDDADTIKKKVMS-MYTDPNH---IRVEDPGKVEGNVVFTYLDAFD  249 (333)
T ss_pred             cCchhcccCCCcccCCCCC-CcCCCCCCC-eeeeeCCHHHHHHHHHh-CcCCCCC---ccCCCCCCCCcChHHHHHHHhC
Confidence            2       36899999985 899999975 99999999999999999 9999742   3477899999999999999996


Q ss_pred             cChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhcccC
Q 022791          229 EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  286 (292)
Q Consensus       229 ~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~~  286 (292)
                      ++++++++++++|.+|+++|+|||+.||+.|+++|+|+|+||++++++  +|+++|..|.
T Consensus       250 ~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~vl~~G~  309 (333)
T PRK12282        250 PDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEILKAGS  309 (333)
T ss_pred             CCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999876  8999998763

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=1.4e-65  Score=487.81  Aligned_cols=259  Identities=18%  Similarity=0.175  Sum_probs=225.3

Q ss_pred             hh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHHH
Q 022791            4 KY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK   74 (292)
Q Consensus         4 ~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~   74 (292)
                      +|  +|++.|+.++++||||||+|. ..+++.+++++++++++|+|||+||+|++||.||++++|    |.+.   .+++
T Consensus        26 ~~v~lq~q~~~~~~~~IADlHAlT~-~~dp~~lr~~~~e~aa~~LA~GlDPek~~if~QSdvpeh~EL~wiL~~it~~g~  104 (431)
T PRK12284         26 PAIAASRQPGVESFYFLADYHALIK-CDDPARIQRSTLEIAATWLAAGLDPERVTFYRQSDIPEIPELTWLLTCVAGKGL  104 (431)
T ss_pred             HHHHHHHhCCCcEEEEeechhhccC-CCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCcchhHHHHHHHHHhhhhHHH
Confidence            46  665557788888899999995 589999999999999999999999999999999999987    3333   3799


Q ss_pred             hhhheeecceeecc---ccC--CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC
Q 022791           75 VAKCVTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG  149 (292)
Q Consensus        75 l~r~~t~~~~~~~~---g~~--~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n  149 (292)
                      |+|+++||++....   |+.  ++.++|+|+||+||||        |||+|++|   +||||.||+||+|||||||+|||
T Consensus       105 L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAA--------DILly~ad---~VPVG~DQ~qHlELaRdIA~rFN  173 (431)
T PRK12284        105 LNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAA--------DILMFNAH---KVPVGRDQIQHIEMARDIAQRFN  173 (431)
T ss_pred             HHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHh--------hhhhcCCC---EEEEcchhHHHHHHHHHHHHHHh
Confidence            99999999875332   222  4579999999999999        99999996   89999999999999999999998


Q ss_pred             C-------CCccchh---ccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccc
Q 022791          150 Y-------HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI  219 (292)
Q Consensus       150 ~-------~~p~~l~---~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~  219 (292)
                      +       +.|..+.   +++||||+|  +|||||++ ++|+|+|+|++|++||++ |+||+..+.     .+++|++||
T Consensus       174 ~~yg~~~F~~Pe~~i~~~~~~I~gLdg--~KMSKS~~-n~I~L~Ds~~~I~kKI~~-A~TDs~~~~-----~~~~pe~sn  244 (431)
T PRK12284        174 HLYGGEFFVLPEAVIEESVATLPGLDG--RKMSKSYD-NTIPLFAPREELKKAIFS-IVTDSRAPG-----EPKDTEGSA  244 (431)
T ss_pred             hhcCCcccCCCccccccccccccCCCC--ccccCCCC-CEeeecCCHHHHHHHHhc-CCCCCCCCC-----CCCCCCcch
Confidence            4       3454433   589999998  69999996 599999999999999999 999987532     368899999


Q ss_pred             cchhhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791          220 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  285 (292)
Q Consensus       220 ~~~~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~  285 (292)
                      +++|+++|+. .+++++++++|..| ++|++||+.|++.|+++|+|||+||+++.++  +|+++|..+
T Consensus       245 Ll~i~~~~~~-~~~~eel~~~~~~g-~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~~l~~iL~~G  310 (431)
T PRK12284        245 LFQLYQAFAT-PEETAAFRQALADG-IGWGDAKQRLFERIDRELAPMRERYEALIARPADIEDILLAG  310 (431)
T ss_pred             HHHHHHHhCC-cchHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            9999999952 46799999999844 9999999999999999999999999999986  899999876

>TIGR00233 trpS tryptophanyl-tRNA synthetase

Probab=100.00  E-value=6.2e-65  Score=475.43  Aligned_cols=264  Identities=36%  Similarity=0.533  Sum_probs=229.2

Q ss_pred             hhhHHhhcCcceEEEeecccccccccc-CHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchh----hhH---hHHH
Q 022791            3 TKYLQDAFKVPLVIQLTDDEKCMWKNL-SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA----FYK---NMVK   74 (292)
Q Consensus         3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~~-~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~----~~~---~~~~   74 (292)
                      .+++|+ .|+.++|+||||||+|+++. +++.++.++++++++|+|||+||+|++||.||+|++|+    .+.   ++.+
T Consensus        26 ~~~~~q-~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~e~~el~~~l~~~~t~~~  104 (328)
T TIGR00233        26 TKWLQQ-FGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYPEHYELAWLLSCQVTFGE  104 (328)
T ss_pred             HHHHHh-CCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcHHHHHHHHHHHccCCHHH
Confidence            445775 59999999999999997532 88899999999999999999999999999999999762    222   3678


Q ss_pred             hhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC-----
Q 022791           75 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG-----  149 (292)
Q Consensus        75 l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n-----  149 (292)
                      +.|+++|++...    .++.++|+|+||+||||        |||.+++|   +||||+||+||+||||++|+|||     
T Consensus       105 l~r~~~~k~k~~----~~~~~~g~l~YP~lqaa--------Dil~~~~d---~vpvG~DQ~~h~elaRdia~r~n~~~~~  169 (328)
T TIGR00233       105 LKRMTQFKDKSQ----AENVPIGLFSYPVLQAA--------DILLYQAD---LVPVGIDQDQHLELTRDLAERFNKKFKN  169 (328)
T ss_pred             HHhccCcchhcc----CCCCCchhhcchHHHHh--------hhhhcCCC---eeecccccHHHHHHHHHHHHHhhhhcCc
Confidence            888888877642    25679999999999999        99999997   79999999999999999999999     


Q ss_pred             -CCCccchhc---cccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcc-cHHHHHHhCCCccccccchhh
Q 022791          150 -YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE-SVELHRKLGANLEVDIPVKYL  224 (292)
Q Consensus       150 -~~~p~~l~~---~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~-~~~~~~~~~~~p~~~~~~~~l  224 (292)
                       +++|..+++   +.||||+|  +|||||+|||+|+|+|+|++|++||++ |+||++. +.+++++.+|+|.+++++.++
T Consensus       170 ~f~~P~~l~~~~~~~l~gl~~--~KMSKS~~~s~I~L~D~~e~I~~KI~~-a~td~~~~~~~~~~~~~g~~~l~~i~~~~  246 (328)
T TIGR00233       170 FFPKPESLISKFFPRLMGLSG--KKMSKSDPNSAIFLTDTPKQIKKKIRK-AATDGGRVTLFEHREKGGVPNLLVIYQYL  246 (328)
T ss_pred             ccCCChhhhccccCCCCCCCC--CcCCCCCCCCeEeecCCHHHHHHHHHh-cCCCCCCCcccCcCCCCCCchHHHHHHHh
Confidence             688988875   45777776  699999999999999999999999999 9999873 444445567777777777887


Q ss_pred             hhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhccc
Q 022791          225 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR  285 (292)
Q Consensus       225 ~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~  285 (292)
                      .++..+++++++++++|.+|+++|++||+.||++|+++|+|||+|++++.+++|++++..+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~~~~~~l~~g  307 (328)
T TIGR00233       247 SFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEEILDKILEPG  307 (328)
T ss_pred             hccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776556789999999999999999999999999999999999999999999999999875

This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.

>PRK12283 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=7.8e-65  Score=479.03  Aligned_cols=265  Identities=18%  Similarity=0.213  Sum_probs=228.9

Q ss_pred             chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHHH
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK   74 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~   74 (292)
                      +.+|++-+-+..++|+||||||+|++..+++.+++++++++++|+|||+||+|+.||.||++++|    |++.   .+++
T Consensus        24 ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v~eh~eL~wil~~~t~~~~  103 (398)
T PRK12283         24 LKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKVPEHAELHLLLSMITPLGW  103 (398)
T ss_pred             HHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCchHHHHHHHHHHhhccHHH
Confidence            45784322255678888999999975469999999999999999999999999999999999987    3333   3799


Q ss_pred             hhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC----
Q 022791           75 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY----  150 (292)
Q Consensus        75 l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~----  150 (292)
                      |.|++|+|++..+.+..++.++|+++||+||||        |||+|+++   +||||+||+||+||||+||+|||.    
T Consensus       104 L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAA--------DILl~~a~---iVPVG~DQ~qHleLaRdIA~rfN~~yg~  172 (398)
T PRK12283        104 LERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSA--------DILIYRAG---LVPVGEDQVPHVEMTREIARRFNHLYGR  172 (398)
T ss_pred             HHhhhHHHHHHhhhccccCCcchhhcCcHHHHH--------HHHhcCCC---EeeeccccHHHHHHHHHHHHHHHHhcCc
Confidence            999999999876432235679999999999999        99999995   899999999999999999999875    


Q ss_pred             ------------------------------------------------------------------------CCccch--
Q 022791          151 ------------------------------------------------------------------------HKPALI--  156 (292)
Q Consensus       151 ------------------------------------------------------------------------~~p~~l--  156 (292)
                                                                                              +.|..+  
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~  252 (398)
T PRK12283        173 EPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKIILPEPQALLT  252 (398)
T ss_pred             cccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCCcccCCCccccc
Confidence                                                                                    233332  


Q ss_pred             hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHH
Q 022791          157 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEH  236 (292)
Q Consensus       157 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ee  236 (292)
                      .+++||||+|  +|||||++ ++|+|+|+|++|++||++ |+||+..   +++..+|+|++||+++|+++|+ ++++.++
T Consensus       253 ~~~~I~gLdg--~KMSKS~~-n~I~L~Ds~~~I~kKI~~-a~TDs~~---~~~~~~g~Pe~~nl~~i~~~~~-~~~~~~~  324 (398)
T PRK12283        253 EASKMPGLDG--QKMSKSYG-NTIGLREDPESVTKKIRT-MPTDPAR---VRRTDPGDPEKCPVWQLHQVYS-DEETKEW  324 (398)
T ss_pred             CCCcccCCCC--CcCCCCCC-CeeeCcCCHHHHHHHHHh-CCCCCcc---cccCCCCCCCcCHHHHHHHHhC-CChHHHH
Confidence            2589999988  79999976 599999999999999999 9998753   4567789999999999999994 3446899


Q ss_pred             HHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791          237 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  285 (292)
Q Consensus       237 l~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~  285 (292)
                      +.++|++|+++|++||+.|++.|+++|+|||+|+.++.++  +|+++|.++
T Consensus       325 i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G  375 (398)
T PRK12283        325 VQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADG  375 (398)
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999876  899999875

>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-64  Score=448.49  Aligned_cols=263  Identities=21%  Similarity=0.302  Sum_probs=235.6

Q ss_pred             hhh--HHhhcC--cceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---h
Q 022791            3 TKY--LQDAFK--VPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---N   71 (292)
Q Consensus         3 ~~~--lQ~~~g--~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~   71 (292)
                      ..|  ||+.++  ..+++.|+|+||+|. +.++..+|+++.++++.+||||+||+|+.+|+||++++|    |.+.   .
T Consensus        36 ~~Wv~LQ~~~d~~~~~~f~vvDlHaITv-p~dp~~lrq~~~dm~A~lLAcGIdp~Ks~lF~QS~Vpqh~el~WlLsslt~  114 (347)
T KOG2713|consen   36 KPWVQLQNEYDKNILVLFSVVDLHAITV-PQDPAELRQATHDMAASLLACGIDPEKSSLFVQSDVPQHAELSWLLSSLTT  114 (347)
T ss_pred             hHHHHHHHHhcCCceEEEEEeeceeecC-CCChHHHHHHHHHHHHHHHHhccCcccceeeeeccchHHHHHHHHHHhccc
Confidence            468  999754  456777799999998 577789999999999999999999999999999999987    4444   3


Q ss_pred             HHHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC-
Q 022791           72 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-  150 (292)
Q Consensus        72 ~~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~-  150 (292)
                      +++|+||++||++..+.+ .++.++|+|+||+||||        |||+|++   |+||||+||.||+||+|++|++||. 
T Consensus       115 mg~L~rm~Q~KeKs~~~~-~~~~~vGLftYPvLqAA--------DILLYks---ThVPVGeDQsQHleL~r~lA~~fN~~  182 (347)
T KOG2713|consen  115 MGRLARMPQWKEKSERFK-VGDVPVGLFTYPVLQAA--------DILLYKS---THVPVGEDQSQHLELARHLAQAFNKT  182 (347)
T ss_pred             hHHHHhhHHHHhhhhhhc-cCccceeeecchhHhhh--------hHhhhcc---ccccCCccHHHHHHHHHHHHHHHhhh
Confidence            899999999999997654 46789999999999999        9999999   5999999999999999999999995 


Q ss_pred             ------CCccchh---ccccccccCCcccccccCCC--ceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccc
Q 022791          151 ------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI  219 (292)
Q Consensus       151 ------~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~  219 (292)
                            |.|..+.   +++|++|..|.+|||||+||  ++|+|+|+|+.|.+||+| |.||...  +..|+++++|+++|
T Consensus       183 Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~k-a~TD~~~--~vtYd~~~RpgvsN  259 (347)
T KOG2713|consen  183 YGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKK-AQTDNTS--GVTYDPANRPGVSN  259 (347)
T ss_pred             ccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHH-Hhccccc--ceeeCCccccchhH
Confidence                  6776654   68999999999999999986  799999999999999999 9999654  34589999999999


Q ss_pred             cchhhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791          220 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  285 (292)
Q Consensus       220 ~~~~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~  285 (292)
                      ++.+++..  ++.+.+|+.++++.  ++++++|..||++|++.|+|||++++++..+  |+++++..+
T Consensus       260 Llni~aaV--t~~s~eeV~~~~a~--~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~~G  323 (347)
T KOG2713|consen  260 LLNIYAAV--TGKSIEEVVEESAN--MSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLEEG  323 (347)
T ss_pred             HHHHHHHH--cCCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHHHh
Confidence            99999998  56789999998874  8999999999999999999999999999986  999999876

>PRK08560 tyrosyl-tRNA synthetase; Validated

Probab=100.00  E-value=5.4e-63  Score=463.09  Aligned_cols=249  Identities=25%  Similarity=0.354  Sum_probs=224.7

Q ss_pred             chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch-hhhHhHHHhhhhee
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVT   80 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t   80 (292)
                      .++|||++ |+.++|+||||||+++++.+++.+++++++++++|+|||+||+|+.||.||+|++| .||..+..|++.++
T Consensus        53 ~~~~lq~~-g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~  131 (329)
T PRK08560         53 KLADLQKA-GFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTT  131 (329)
T ss_pred             HHHHHHHC-CCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhcc
Confidence            35679994 99999999999999986589999999999999999999999999999999999977 68888999999999


Q ss_pred             ecceeec---cccC-CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccch
Q 022791           81 YNKVVGI---FGFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALI  156 (292)
Q Consensus        81 ~~~~~~~---~g~~-~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l  156 (292)
                      +.++.+.   +++. ++.++|+|+||+||||        |||.+++|   +||||.||+||+++||++|+|||+++|.++
T Consensus       132 ~~~l~r~~~~~~~~~~~~~~g~l~YP~lqaa--------Dil~~~ad---~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l  200 (329)
T PRK08560        132 LARARRSMTIMGRRMEEPDVSKLVYPLMQVA--------DIFYLDVD---IAVGGMDQRKIHMLAREVLPKLGYKKPVCI  200 (329)
T ss_pred             HHHHHHhhhhhcccCCCCCHHHHHHHHHHHH--------HHHHhCCC---EEEechhHHHHHHHHHHhhHhcCCCCceEE
Confidence            8888763   3332 3459999999999999        99999996   799999999999999999999999999999


Q ss_pred             hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccC------
Q 022791          157 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED------  230 (292)
Q Consensus       157 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~------  230 (292)
                      ++++||||+|+++|||||+|+++|+|+|+|++|++||++ ||||+           ++|+.+++++|++++...      
T Consensus       201 ~~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I~~KI~k-A~t~~-----------~~~~~n~v~~~~~~~~~~~~~~~~  268 (329)
T PRK08560        201 HTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRKIKK-AYCPP-----------GEVEGNPVLEIAKYHIFPRYDPFV  268 (329)
T ss_pred             EcCccCCCCCCCCCCcCCCCCCeecccCCHHHHHHHHHh-ccCCC-----------CCcCCCcHHHHHHHHhhccccceE
Confidence            999999999987799999998999999999999999999 99986           346677888998887532      


Q ss_pred             ------------hHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791          231 ------------DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  274 (292)
Q Consensus       231 ------------~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~  274 (292)
                                  ++++++++++|.+|+++|++||+.||++|+++|+|||++|++-.
T Consensus       269 ~~r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~  324 (329)
T PRK08560        269 IERPEKYGGDLEYESYEELERDYAEGKLHPMDLKNAVAEYLIEILEPVREYLEEGP  324 (329)
T ss_pred             EechhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence                        25789999999999999999999999999999999999998754

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase

Probab=100.00  E-value=1.5e-60  Score=437.44  Aligned_cols=242  Identities=39%  Similarity=0.584  Sum_probs=214.2

Q ss_pred             chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHHH
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK   74 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~   74 (292)
                      ++.|||++ |+.++|+|||+||+|++..+++++++++++++++|+|||+||+|++||.||++++|    |.+.   ++.+
T Consensus        23 ~~~~lQ~a-g~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~~~~~l~~~l~~~~~~~~  101 (280)
T cd00806          23 FWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVPEHYELAWLLSCVVTFGE  101 (280)
T ss_pred             HHHHHHhC-CCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcHHHHHHHHHHhCcCCHHH
Confidence            35679996 99999999999999975359999999999999999999999999999999999876    2222   3678


Q ss_pred             hhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC-----
Q 022791           75 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG-----  149 (292)
Q Consensus        75 l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n-----  149 (292)
                      +.|+++|+++.+.   .++.++|+++||+||||        |||.+++   |+||||.||+||+|+||++|+|||     
T Consensus       102 l~r~~~fk~~~~~---~~~~~~g~~~YP~lqaa--------Dil~~~~---~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~  167 (280)
T cd00806         102 LERMTGFKDKSAQ---GESVNIGLLTYPVLQAA--------DILLYKA---CLVPVGIDQDPHLELTRDIARRFNKLYGE  167 (280)
T ss_pred             HHhccchhhhhcc---CCCCcchhhcchHHHHh--------hhhhccC---CEEeeccccHHHHHHHHHHHHHhcccccc
Confidence            8888888776542   35789999999999999        9999998   589999999999999999999999     


Q ss_pred             -CCCccchhc--cccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhh
Q 022791          150 -YHKPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF  226 (292)
Q Consensus       150 -~~~p~~l~~--~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~  226 (292)
                       +++|..+++  ++||||+|+++|||||+|+|+|+|+|+|++|++||++ |+||+..+  ++++.+++|+++++++||++
T Consensus       168 ~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI~~-a~td~~~~--~~~~~~~~~~~~~l~~~~~~  244 (280)
T cd00806         168 IFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMK-AATDGGRT--EHRRDGGGPGVSNLVEIYSA  244 (280)
T ss_pred             ccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHHHh-ccCCCCCc--eecCCCCCCCcChHHHHHHH
Confidence             789999888  9999999987899999998899999999999999999 99999864  56889999999999999998


Q ss_pred             hcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHH
Q 022791          227 FLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL  262 (292)
Q Consensus       227 ~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~  262 (292)
                      |.. +.++++++ .+|..|++++++||+.||+.|+++
T Consensus       245 ~~~~~~~~~~~~-~~~~~g~~~~~~~K~~lae~i~~~  280 (280)
T cd00806         245 FFNDDDEELEEI-DEYRSGGLGYGECKKLLAEAIQEF  280 (280)
T ss_pred             HhCCCHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHhC
Confidence            753 44556666 899999999999999999999863

Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding

>PTZ00126 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=6.2e-59  Score=441.45  Aligned_cols=247  Identities=20%  Similarity=0.292  Sum_probs=212.4

Q ss_pred             hhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcc-cch--hhhHhHHHhhhh
Q 022791            4 KYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG--AFYKNMVKVAKC   78 (292)
Q Consensus         4 ~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~-~~~--~~~~~~~~l~r~   78 (292)
                      .+||++ |+.++|+||||||+++++  .+++.++++++++++.|+|||+||+|+.||.||+| ++|  .||..+..+++.
T Consensus        92 ~~lq~~-G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~  170 (383)
T PTZ00126         92 NKLTKA-GCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARS  170 (383)
T ss_pred             HHHHhC-CCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhcc
Confidence            349985 999999999999999865  69999999999999999999999999999999984 455  578888889888


Q ss_pred             eeecceeec---cccC--CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC-CC
Q 022791           79 VTYNKVVGI---FGFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HK  152 (292)
Q Consensus        79 ~t~~~~~~~---~g~~--~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~-~~  152 (292)
                      +|++++++.   +++.  ++.++|+|+||+||||        ||+.+++|   +||||.||+||++|||++|++||+ ++
T Consensus       171 ~tl~r~~r~~~~~~r~~~~~~~~g~l~YP~LQaa--------Dil~l~ad---ivpvG~DQ~~~~~LaRdia~~~~~~~~  239 (383)
T PTZ00126        171 FNITRIKRCSQIMGRSEGDEQPCAQILYPCMQCA--------DIFYLKAD---ICQLGMDQRKVNMLAREYCDKKKIKKK  239 (383)
T ss_pred             CCHHHHHhhhhhhccccCCCCCchhhhhhHHHhh--------hhhccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCC
Confidence            888887643   2332  3568999999999999        99999997   799999999999999999999995 68


Q ss_pred             ccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhh-----
Q 022791          153 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-----  227 (292)
Q Consensus       153 p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~-----  227 (292)
                      |.++++++||||+++++|||||+||++|+|+|+|++|++|||+ |||+++..       ++||    ++.|+.++     
T Consensus       240 ~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~Dspe~I~kKI~k-A~t~p~~~-------~~np----v~~~~~~~~~~~~  307 (383)
T PTZ00126        240 PIILSHHMLPGLLEGQEKMSKSDPNSAIFMEDSEEDVNRKIKK-AYCPPGVI-------EGNP----ILAYFKSIVFPAF  307 (383)
T ss_pred             ceeecccccccCCCCCCCCCcCCCCCeecCCCCHHHHHHHHHh-CcCCCCCC-------CCCc----chhhhhhcccccc
Confidence            8888999999997556899999999999999999999999999 99987532       3344    55555542     


Q ss_pred             ---c-c---------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791          228 ---L-E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  274 (292)
Q Consensus       228 ---~-~---------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~  274 (292)
                         . .         ++.++++++++|.+|+++|++||++||++|+++|+|||++|+.-.
T Consensus       308 ~~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l~p~dlK~~lae~i~~~L~PIRe~~~~~~  367 (383)
T PTZ00126        308 NSFTVLRKEKNGGDVTYTTYEELEKDYLSGALHPGDLKPALAKYLNLMLQPVRDHFQNNP  367 (383)
T ss_pred             cceeEeccccccCccCcCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence               1 0         235899999999999999999999999999999999999998543

>PTZ00348 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=5.1e-56  Score=444.23  Aligned_cols=253  Identities=18%  Similarity=0.251  Sum_probs=215.2

Q ss_pred             cCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCc-ccch--hhhHhHHHhhhheeecce
Q 022791           10 FKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFD-YVGG--AFYKNMVKVAKCVTYNKV   84 (292)
Q Consensus        10 ~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~-~~~~--~~~~~~~~l~r~~t~~~~   84 (292)
                      .|+.++++||||||+|+++  .+++.++.+++++++.|+|||+||+|+.||.||+ +++|  .||..+..+++.+|+.+.
T Consensus        63 ~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~  142 (682)
T PTZ00348         63 AGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARI  142 (682)
T ss_pred             CCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHH
Confidence            3888999999999999643  5889999999999999999999999999999997 6666  567666666666666655


Q ss_pred             eec---cccCC-CCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC-CCccchhcc
Q 022791           85 VGI---FGFTG-EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESS  159 (292)
Q Consensus        85 ~~~---~g~~~-~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~-~~p~~l~~~  159 (292)
                      ++.   +|+.+ +.++|+++||+||||        |||.+++|   +||||.||+||+||||++|++||. ++|.+++++
T Consensus       143 K~~~~~~g~~~~~i~~gll~YPvLQAA--------DIl~l~ad---ivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~  211 (682)
T PTZ00348        143 KKCCTIMGKTEGTLTAAQVLYPLMQCA--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHH  211 (682)
T ss_pred             HHHHHhhcccCCCCchHHHhhhHHHhh--------cccccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCceecccc
Confidence            543   44433 479999999999999        99999997   799999999999999999999995 578888899


Q ss_pred             ccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCc----cccccchhhhhhcc------
Q 022791          160 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANL----EVDIPVKYLSFFLE------  229 (292)
Q Consensus       160 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p----~~~~~~~~l~~~~~------  229 (292)
                      +||||+|+++|||||+|+|+|+|+|+|++|++||++ ||||+..........+|+|    +.+++++|++++..      
T Consensus       212 ~LpGL~gg~~KMSKS~p~naI~L~Dspe~I~kKI~k-A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~  290 (682)
T PTZ00348        212 MLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ-AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAV  290 (682)
T ss_pred             cCcCCCCCCCcCCCCCCCCeecccCCHHHHHHHHHh-CCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchh
Confidence            999999767899999998899999999999999999 9999853111123457788    77899999888631      


Q ss_pred             ------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791          230 ------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  274 (292)
Q Consensus       230 ------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~  274 (292)
                            .++++++++++|.+|+++|++||++|+++|+++|+|||++|++-.
T Consensus       291 ~~i~~~~~~~~eele~~y~~g~l~~~dlK~~lae~l~~~L~PIRe~~~~~~  341 (682)
T PTZ00348        291 ATIDGTTYATYEDLEQAFVSDEVSEEALKSCLIDEVNALLEPVRQHFASNP  341 (682)
T ss_pred             cccCCcccCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence                  126799999999999999999999999999999999999998664

>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6

Probab=100.00  E-value=3.7e-53  Score=391.11  Aligned_cols=247  Identities=30%  Similarity=0.445  Sum_probs=216.9

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhh--hhhccCCCCceeEecCCcccch-hh---hHh--
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKD--IIACGFDVTKTFIFSDFDYVGG-AF---YKN--   71 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~--~lA~Gldp~k~~i~~qs~~~~~-~~---~~~--   71 (292)
                      .+.|||+ .|+.++|+||||||+++++  .+++.++.+.++++..  ++|+|+||+++.||.||+|.++ .+   +.+  
T Consensus        28 ~~~~lq~-~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~~~~~~~~~~~l~~~~  106 (292)
T PF00579_consen   28 KLIWLQK-AGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSDWPEHMELWWFLSDVA  106 (292)
T ss_dssp             HHHHHHH-TTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHh-cCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCCcccccchhhhhcccc
Confidence            4678999 5999999999999999865  3799999999999999  9999999999999999999876 22   222  


Q ss_pred             -HHHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC
Q 022791           72 -MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY  150 (292)
Q Consensus        72 -~~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~  150 (292)
                       ..+++|+.++++++++++..++.++|+++||+||||        ||+.+++|   +||||.||++|+++||++|+|+|+
T Consensus       107 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaa--------D~~~l~~~---~~~~G~DQ~~~~~l~rd~a~k~~~  175 (292)
T PF00579_consen  107 RLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAA--------DILLLKAD---LVPGGIDQRGHIELARDLARKFNY  175 (292)
T ss_dssp             BHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHH--------HHHHTTHS---EEEEEGGGHHHHHHHHHHHHHHTH
T ss_pred             cccchhhhhhhcccccccccccCcceeeEEccccccc--------ceeeeccc---cccccchHHHHHHHHHHHHhhhcc
Confidence             577888999988777665446789999999999999        99999997   799999999999999999999999


Q ss_pred             C----CccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccc-cchhhh
Q 022791          151 H----KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI-PVKYLS  225 (292)
Q Consensus       151 ~----~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~-~~~~l~  225 (292)
                      .    +|.+++++++|||+|. +|||||+|||+|||+|++++|++||++ |+|++..  +..+..+++|.+++ ++.++.
T Consensus       176 ~~~~~~p~~l~~~~l~~l~G~-~KMSKS~~ns~I~L~d~~~~i~~Ki~~-a~~~~~~--~~~~~~~~~~~~~~~~i~~~~  251 (292)
T PF00579_consen  176 KEIFPKPAGLTSPLLPGLDGQ-KKMSKSDPNSAIFLDDSPEEIRKKIKK-AFCDPDR--ENPRLLKGRPFISPFLIERLE  251 (292)
T ss_dssp             HSTSSS-EEEEETCBBSTTSS-SBTTTTTTGGS-BTTTTHHHHHHHHHH-SHTSTTS--HHHHHHHHHHTHHHHHHHHHH
T ss_pred             cccccCchheeeccccccCCc-cccCccCCccEEEEeccchhHHHHHHH-HhhCCCc--ccccccccCCCCCHHHHHHHH
Confidence            7    9999999999999994 599999999999999999999999999 9999987  44566778888888 788887


Q ss_pred             hhccCh--HHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHH
Q 022791          226 FFLEDD--AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE  264 (292)
Q Consensus       226 ~~~~~~--~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~  264 (292)
                      .+..+.  .+++++.++|.+|.+|++++|++++++++++|+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le  292 (292)
T PF00579_consen  252 AFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE  292 (292)
T ss_dssp             HHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence            765322  368999999999999999999999999999985

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase

Probab=100.00  E-value=3.6e-52  Score=380.26  Aligned_cols=227  Identities=23%  Similarity=0.277  Sum_probs=200.7

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHhchhhhhhccCC--CCceeEecCCcccchhhhH
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGGAFYK   70 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~~~~~~lA~Gld--p~k~~i~~qs~~~~~~~~~   70 (292)
                      .++|||++ |+.++|+|||+||+++++         .+++++++|+++++++|+|+|+|  |+|+.||.||+|++|.+|.
T Consensus        24 ~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k~~i~~~s~~~~~l~~~  102 (269)
T cd00805          24 KLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEKAKFVNNSDWLLSLYTL  102 (269)
T ss_pred             HHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcceEEEEchHhhccCCHH
Confidence            46789996 999999999999999765         79999999999999999999997  9999999999999887787


Q ss_pred             hHHHhhhheeecceeecccc------CCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCcccccccc
Q 022791           71 NMVKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV  144 (292)
Q Consensus        71 ~~~~l~r~~t~~~~~~~~g~------~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~i  144 (292)
                      .++++++.++++++.+..++      .++.++|+|+||+||||        ||+.++++   +||||.||++|++++|++
T Consensus       103 ~~l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaa--------Di~~l~~~---l~~~G~DQ~~~i~~~rd~  171 (269)
T cd00805         103 DFLRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAY--------DFVYLDVD---LQLGGSDQRGNITLGRDL  171 (269)
T ss_pred             HHHHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh--------hHHHHhCC---eeEecHHHHHHHHHHHHH
Confidence            77778888888777765432      35679999999999999        99999984   899999999999999999


Q ss_pred             CcccCCCCccchhccccccccCCcccccccCCCce-eEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchh
Q 022791          145 APRIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY  223 (292)
Q Consensus       145 a~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~-I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~  223 (292)
                      |+|||+.+|..+++++||||+|  +|||||.+|+. |++.|+|++|++||++ |+|+               ++++++.+
T Consensus       172 a~r~~~~~~~~l~~~ll~~l~G--~KMSKS~~~~~~i~l~dsp~~i~~Ki~~-a~~~---------------~v~~~l~~  233 (269)
T cd00805         172 IRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDP---------------DVLEFLKL  233 (269)
T ss_pred             HHHhCCCCcEEEeeccccCCCC--CcccCCCCCcccccCCCCHHHHHHHHHc-CCcH---------------HHHHHHHH
Confidence            9999999999999999999999  69999999866 7999999999999999 9996               13444444


Q ss_pred             hhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHH
Q 022791          224 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE  261 (292)
Q Consensus       224 l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~  261 (292)
                      +.++  ++++++|++++|.+|.+ ++++|+.||+.|++
T Consensus       234 ~~~~--~~~~~eel~~~~~~~~~-~~~~K~~la~~i~~  268 (269)
T cd00805         234 FTFL--DYEEIEELEEEHAEGPL-PRDAKKALAEELTK  268 (269)
T ss_pred             HHcC--CHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Confidence            4444  67899999999998877 99999999999986

Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase

Probab=100.00  E-value=1.8e-48  Score=356.32  Aligned_cols=230  Identities=18%  Similarity=0.183  Sum_probs=187.0

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc-c--------CHHHHHHHHHhchhhhhhccCC--CCceeEecCCcccch-hhh
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-L--------SVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGG-AFY   69 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~--------~~~~i~~~~~~~~~~~lA~Gld--p~k~~i~~qs~~~~~-~~~   69 (292)
                      +++|||+ +|+.++++|||+||+++++ .        +++++++|+++++++++|+|+|  |+|++||.||+|+.. .++
T Consensus        23 ~~~~lq~-~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k~~i~~ns~~~~~~~~~  101 (273)
T cd00395          23 TFRRFQH-AGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQATLFNNSDWPGPLAHI  101 (273)
T ss_pred             HHHHHHH-CCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcceEEEEccccCCcccHH
Confidence            5678999 4999999999999999753 2        8999999999999999999999  999999999999842 333


Q ss_pred             HhHHHhhhheeecceeecccc----CCCCccccccCCccccCCCCCCCCCccccCCCcccc-cccccccCCCcccccccc
Q 022791           70 KNMVKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDV  144 (292)
Q Consensus        70 ~~~~~l~r~~t~~~~~~~~g~----~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~-~vpvG~DQ~~h~elaR~i  144 (292)
                      ..+..+++.+++.++.+..++    .++.++|+|+||+||||        ||+.++++.+| +||||.||+||+++|||+
T Consensus       102 ~l~~~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQaa--------D~l~l~~~~~~~~vp~G~DQ~~~i~l~rdl  173 (273)
T cd00395         102 QFLRDLGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQAA--------DFLLLNTTEGCDIQPGGSDQWGNITLGREL  173 (273)
T ss_pred             HHHHHHHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHHHH--------HHHHHhcccCCcEEEecHHHHHHHHHHHHH
Confidence            333344444444444443322    14689999999999999        89988874555 999999999999999999


Q ss_pred             CcccC-CCCccchhccccccccCCcccccccCCCce--eEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccc
Q 022791          145 APRIG-YHKPALIESSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV  221 (292)
Q Consensus       145 a~r~n-~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~--I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~  221 (292)
                      |+|+| +++|..+++|+||||+|  .|||||++|+.  |+++|+|++|++||++ |+                  .++++
T Consensus       174 a~r~n~~~~p~~l~~p~l~~l~G--~KMSKS~~~~i~l~~~~dsp~~i~~ki~~-a~------------------d~~v~  232 (273)
T cd00395         174 ARRFNGFTIAEGLTIPLVTKLDG--PKFGKSESGPKWLDTEKTSPYEFYQFWIN-AV------------------DSDVI  232 (273)
T ss_pred             HHHhCCCCCCeEEeeccccCCCC--CcCCCCCCCCccccccCCCHHHHHHHHHc-cc------------------HhHHH
Confidence            99997 57898999999999999  49999998753  4479999999999999 86                  25567


Q ss_pred             hhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHH
Q 022791          222 KYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL  262 (292)
Q Consensus       222 ~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~  262 (292)
                      .|+++|+. +.+++++|++++.+|. +++++|+.||+.|+++
T Consensus       233 ~~~~~~t~~~~~ei~~i~~~~~~~~-~~~~~K~~La~~i~~~  273 (273)
T cd00395         233 NILKYFTFLSKEEIERLEQEQYEAP-GYRVAQKTLAEEVTKT  273 (273)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Confidence            88887753 5677777777776663 7799999999999863

Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1e-46  Score=335.77  Aligned_cols=249  Identities=21%  Similarity=0.231  Sum_probs=205.3

Q ss_pred             HHhhcCcceEEEeeccccccccc-cCHHHHHHHHHhchhhhh----hccCCCCceeEecCCcccch-hhhHhHHHhhhhe
Q 022791            6 LQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDII----ACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCV   79 (292)
Q Consensus         6 lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~~~~~~~l----A~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~   79 (292)
                      +-. +||.|.|++|||||+++|. .+++.+..++.++-..+.    ..+++.++.-+...|++... .|-..+.++++.+
T Consensus        61 flk-AGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~yq~sk~ytld~~rl~~~~  139 (360)
T KOG2144|consen   61 FLK-AGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSNYQLSKYYTLDMYRLSSNV  139 (360)
T ss_pred             HHh-cCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhcccccccCccchhhHHHHHhhc
Confidence            334 4999999999999999876 788888877765544333    34556666644455666533 5566799999999


Q ss_pred             eecceeecc--c--cCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccc
Q 022791           80 TYNKVVGIF--G--FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPAL  155 (292)
Q Consensus        80 t~~~~~~~~--g--~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~  155 (292)
                      |-++.++..  +  ..++..++.++||.|||+        |++.+++|   .+++|.|||+.+.+||++++.+|+++|.+
T Consensus       140 ~~hdak~agaevvkqve~plls~llYP~MQal--------De~~L~vD---~qfgGvDQRKIf~~A~eylp~l~ykKrih  208 (360)
T KOG2144|consen  140 TQHDAKKAGAEVVKQVENPLLSGLLYPGMQAL--------DEFYLEVD---AQFGGVDQRKIFVLAEEYLPDLGYKKRIH  208 (360)
T ss_pred             cHhHHHHhhhhHHHhhcchhhhhhhhhhHHHh--------hHHHHhhh---HHhcCccHHHHHHHHHHhhhhhCccccee
Confidence            998887652  2  246678899999999999        78888888   47999999999999999999999999999


Q ss_pred             hhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCcccc----ccchhhhhhcc--
Q 022791          156 IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD----IPVKYLSFFLE--  229 (292)
Q Consensus       156 l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~----~~~~~l~~~~~--  229 (292)
                      +++||+|||++ ++|||||+|+|.|+|.|+|++|.+||+| |||.|+..       ++|++.+    ++|+++..+..  
T Consensus       209 LmnpMvPGL~q-~~KMSsSd~~SkIdllD~~~~V~kKI~k-AfCePg~v-------e~Ng~L~fvkyvvfP~~~e~~~~~  279 (360)
T KOG2144|consen  209 LMNPMVPGLAQ-GEKMSSSDPLSKIDLLDEPADVNKKIKK-AFCEPGNV-------EGNGCLSFVKYVVFPIFEEFGVEV  279 (360)
T ss_pred             ecCCCCccccc-cCccccCCcccccccccCHHHHHHHHHH-hcCCCCCc-------CCCcHHHHHHHHHhhhHHhcCcee
Confidence            99999999996 4899999999999999999999999999 99998753       5777765    34555543321  


Q ss_pred             -----------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 022791          230 -----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD  275 (292)
Q Consensus       230 -----------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~  275 (292)
                                 ++.++|+++++|.+|++||+|||+.|+.+|+++|+|||+.++..-+
T Consensus       280 i~r~ek~GG~~tf~syed~e~~y~~~~lhPgDLK~~l~~alN~lL~~ir~~~~~~~~  336 (360)
T KOG2144|consen  280 IDRPEKFGGNKTFKSYEDIEKDYEEGELHPGDLKKGLEKALNELLQPIREEFSNWPE  336 (360)
T ss_pred             ecchhhcCCcchhHHHHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence                       3689999999999999999999999999999999999999988554

>PTZ00348 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=1.2e-44  Score=362.54  Aligned_cols=244  Identities=14%  Similarity=0.158  Sum_probs=210.7

Q ss_pred             hhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCccc-ch--hhhHhHHHhhhh
Q 022791            4 KYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG--AFYKNMVKVAKC   78 (292)
Q Consensus         4 ~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~-~~--~~~~~~~~l~r~   78 (292)
                      .+|+...||.++|++|||||+++++  +++++|++.++++++.|.|+|+|++ +.+..+|+.. .+  .||..+++++|.
T Consensus       400 ~~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~  478 (682)
T PTZ00348        400 DFIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARK  478 (682)
T ss_pred             HHHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHh
Confidence            4578878999999999999999877  8999999999999999999999999 8555555543 43  899999999999


Q ss_pred             eeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhc
Q 022791           79 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES  158 (292)
Q Consensus        79 ~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~  158 (292)
                      +|++++++++| .+..++|+++||+||++        ||+.+++|   ++.+|+|||+.++||||++++.+.  |..+++
T Consensus       479 ~tl~r~~r~~g-~~~~~~s~~iYP~MQ~~--------Di~~L~~d---i~~gG~DQRki~mlAre~~~~~~~--~~~~~~  544 (682)
T PTZ00348        479 NLLSHVEELYG-GELRNAGQVIAALMRVA--------TALMLSAS---HVISTSLDGGINEFAREYTKGRIE--CIQALE  544 (682)
T ss_pred             ccHHHHHHHhc-CCcccHHHHHHHHHHHH--------HHHhcCCC---eeecChhHHHHHHHHHHhcccccc--chhhcC
Confidence            99999999986 45568999999999999        99999998   589999999999999999996543  455778


Q ss_pred             cccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc---c------
Q 022791          159 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL---E------  229 (292)
Q Consensus       159 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~---~------  229 (292)
                      +++|||.+|..+|++|+++|+||+.|++++|++||++ |||+++.        ++||.++.+-.++.++.   .      
T Consensus       545 ~~~p~l~~~~~~~~~~s~~s~i~~~D~~~~i~~Ki~k-A~Cpp~~--------~~Npvl~~~~y~~~~~~~~~i~R~e~~  615 (682)
T PTZ00348        545 GRVPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNE--------EANPVISVAQHLLAQQGALSIERGEAN  615 (682)
T ss_pred             CCCccccccccccCCCCCCCeeeecCCHHHHHHHHHh-CCCCCCC--------CCCcHHHHHHHHhcCCCeEEEeccccc
Confidence            9999999777899999889999999999999999999 9999842        46887764322222111   0      


Q ss_pred             ----ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 022791          230 ----DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA  271 (292)
Q Consensus       230 ----~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~  271 (292)
                          .+.+++||+++|.+|.+||+|||.+++++|+++|+|+|++++
T Consensus       616 Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~  661 (682)
T PTZ00348        616 GGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS  661 (682)
T ss_pred             CCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                357899999999999999999999999999999999999997

>PRK05912 tyrosyl-tRNA synthetase; Validated

Probab=100.00  E-value=8e-44  Score=341.77  Aligned_cols=237  Identities=21%  Similarity=0.207  Sum_probs=192.3

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHhchhhhhhccCCCCc--eeEecCCcccchhhhH
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTK--TFIFSDFDYVGGAFYK   70 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k--~~i~~qs~~~~~~~~~   70 (292)
                      +++|||+. |+.++++||||||+++++         .+.+++++|+..+ ...+|+|+||++  +.||.||+|+++..+.
T Consensus        57 ~l~~lQ~~-G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i-~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~  134 (408)
T PRK05912         57 KLRRFQDA-GHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETI-KEQLFKFLDFEKDGAEIVNNSDWLGKLNAI  134 (408)
T ss_pred             HHHHHHHC-CCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHH-HHHHHHhcCcCcCcEEEEECCCcCCcccHH
Confidence            57789995 999999999999999743         3778899999765 556699999999  9999999999873333


Q ss_pred             hHHH-hhhheeecce------eeccccCCCCccccccCCccccCCCCCCCCCccccC----CCcccccccccccCCCccc
Q 022791           71 NMVK-VAKCVTYNKV------VGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFR  139 (292)
Q Consensus        71 ~~~~-l~r~~t~~~~------~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~e  139 (292)
                      .+++ +++.++++++      +.+++..++.++|+|+||+||||        |++.+    +++   ++|||.||++|++
T Consensus       135 ~~l~~v~~~~~v~~m~~~~~~k~r~~~~~~is~~ef~Yp~LQa~--------D~l~l~~~~~~~---i~~gG~DQ~~ni~  203 (408)
T PRK05912        135 DFLRDLGKHFTVNRMLERDDFKKRLREGQGISFTEFLYPLLQGY--------DFVALNKRYGCD---LQLGGSDQWGNIL  203 (408)
T ss_pred             HHHHHHhhhccHHHHhhcchHHHHhccCCCCchhhhhhHHHHHh--------hHHHHhccCCCC---EEeccHHHHHHHH
Confidence            3333 4444444444      33333235789999999999999        88888    775   7999999999999


Q ss_pred             cccccCcccCCCCccchhccccccccCCcccccccCCCceeEecC---CHHHHHHHhhhccccCCcccHHHHHHhCCCcc
Q 022791          140 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLE  216 (292)
Q Consensus       140 laR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~  216 (292)
                      ++||+|+|+|..++..++.|+|||++|  +|||||. +++|||+|   ||+++++||++ + +              +++
T Consensus       204 ~grdla~r~~~~~~~~l~~plL~~~~G--~KMsKS~-~naI~L~d~~tsp~~i~qki~~-~-~--------------D~~  264 (408)
T PRK05912        204 SGRDLQRRYGGKPQFGLTMPLLTGLDG--KKMGKSE-GNAVWLDEEKTSPYEMYQKWMN-I-S--------------DAD  264 (408)
T ss_pred             HHHHHHHHhCCCCeEEEecCCcCCCCC--CcccCCC-CCceeCCCCCCCHHHHHHHHhc-C-C--------------hHH
Confidence            999999999987778888999999998  7999998 56999999   99999999999 5 1              233


Q ss_pred             ccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791          217 VDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  274 (292)
Q Consensus       217 ~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~  274 (292)
                      ++   .|+.+|+. +.+++++++++|.+|. +++++|+.||+.|+++++...+..+...
T Consensus       265 v~---~~l~~~t~~~~~ei~~l~~~~~~g~-~~~~~Kk~LA~~v~~~lhg~~~~~~a~~  319 (408)
T PRK05912        265 VW---RYLKLLTFLSLEEIEELEEELAEGP-NPREAKKVLAEEITALVHGEEAAEAAEE  319 (408)
T ss_pred             HH---HHHHHHhcCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            44   45555542 6788999999998887 9999999999999999999776655443

>PRK13354 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=5e-43  Score=336.03  Aligned_cols=239  Identities=20%  Similarity=0.182  Sum_probs=199.4

Q ss_pred             CchhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHh
Q 022791            1 MFTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN   71 (292)
Q Consensus         1 ~~~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~   71 (292)
                      ++++|||++ |+.++|+|||+||+++++         .+.+++++|+..+.+++.+ |+||+++.|+.||+|.++..+..
T Consensus        56 ~~l~~lq~~-G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~~~~~~  133 (410)
T PRK13354         56 MKLKRFQDA-GHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIFK-LFDFEKTEIVNNSDWLSKLNLID  133 (410)
T ss_pred             HHHHHHHHc-CCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHHH-hcCccceEEEECccccccccHHH
Confidence            357889995 999999999999999753         5778999999988888777 99999999999999987633333


Q ss_pred             -------HHHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccC----CCcccccccccccCCCcccc
Q 022791           72 -------MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRM  140 (292)
Q Consensus        72 -------~~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~el  140 (292)
                             .+.+++|.++++++.+++..++.++|+|+||+|||+        |++.+    +++   ++|||.||++|+++
T Consensus       134 ~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~--------D~~~l~~~~~~~---iq~gG~DQ~~ni~~  202 (410)
T PRK13354        134 FLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAY--------DFVHLNRKEDVD---LQIGGTDQWGNILM  202 (410)
T ss_pred             HHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhh--------hHHHHhccCCCC---EEEecHHHHHHHHH
Confidence                   345555555555554443345678899999999999        88888    775   78999999999999


Q ss_pred             ccccCcccCCCCccchhccccccccCCcccccccCCCceeEecCC---HHHHHHHhhhccccCCcccHHHHHHhCCCccc
Q 022791          141 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS---AKAIKNKINKYAFSGGQESVELHRKLGANLEV  217 (292)
Q Consensus       141 aR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~---~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~  217 (292)
                      +||+++|+|..+|..++.|+|+|++|  .|||||.+| +|||+|+   |+++++||++ +                 |+ 
T Consensus       203 grdl~~r~~~~~~~~lt~PlL~g~dG--~KMsKS~~n-aI~L~d~~tsp~~i~qki~~-~-----------------~D-  260 (410)
T PRK13354        203 GRDLQRKLEGEEQFGLTMPLLEGADG--TKMGKSAGG-AIWLDPEKTSPYEFYQFWMN-I-----------------DD-  260 (410)
T ss_pred             HHHHHHHhCCCCceEeccCCccCCCC--CccCCCCCC-ceeccCCCCCHHHHHHHHHc-C-----------------Ch-
Confidence            99999999999998899999999999  499999864 9999999   9999999999 4                 11 


Q ss_pred             cccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 022791          218 DIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD  275 (292)
Q Consensus       218 ~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~  275 (292)
                      +.++.|+.+|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+....
T Consensus       261 ~~v~~~l~~~t~l~~~ei~~l~~~~~~~~-~~~~~Kk~LA~~v~~~vhg~~~~~~a~~~  318 (410)
T PRK13354        261 RDVVKYLKLFTDLSPDEIDELEAQLETEP-NPRDAKKVLAEEITKFVHGEEAAEEAEKI  318 (410)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            334788888864 6789999999999874 59999999999999999998887665543

>TIGR00234 tyrS tyrosyl-tRNA synthetase

Probab=100.00  E-value=7e-36  Score=284.23  Aligned_cols=217  Identities=22%  Similarity=0.175  Sum_probs=180.0

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch-hhhHh
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKN   71 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~   71 (292)
                      .++|||++ |+.++|+|||+||+++++         .+.+++++|+ +.++.++|+|+||+++.|+.||+|... .|+..
T Consensus        54 ~l~~lq~~-G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~  131 (377)
T TIGR00234        54 KLRDFQQA-GHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDF  131 (377)
T ss_pred             HHHHHHHC-CCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHHhCChhheEEEECchhcCcCCHHHH
Confidence            46789995 999999999999999864         4566677777 678899999999999999999999754 57777


Q ss_pred             HHHhhhheeecceeecccc----CCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcc
Q 022791           72 MVKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR  147 (292)
Q Consensus        72 ~~~l~r~~t~~~~~~~~g~----~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r  147 (292)
                      +..+++.+|++++.++.++    .++.++++|+||+|||+        |++.+++|   ++|||.||++|++.+|++|+|
T Consensus       132 l~~~~~~~tv~~m~~~~~~~~R~~~~is~~ef~YpllQa~--------D~~~l~~d---i~~gG~DQ~~ni~~g~dLar~  200 (377)
T TIGR00234       132 IRDLGKIFSVNRMLRRDAFSSRLERGISLSEFIYPLLQAY--------DFVYLNVD---LQIGGSDQWGNIRKGRDLIRR  200 (377)
T ss_pred             HHHHhCceEHHHHHcccHHHHHHhcCCCchhhhhHHHHHH--------HHHHHcCC---eeEecchhHHHHHHHHHHHHH
Confidence            7778888888888877543    24689999999999999        99999997   799999999999999999999


Q ss_pred             cCCCCccchhccccccccCCcccccccCC----------CceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccc
Q 022791          148 IGYHKPALIESSFFPALQGETGKMSASDP----------NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV  217 (292)
Q Consensus       148 ~n~~~p~~l~~~~lpgL~g~~~KMSkS~~----------~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~  217 (292)
                      +|...+..+..+++++++|  .|||||.+          +++||+.|+|+++.+||++ |+|+...              
T Consensus       201 ~~~~~~~~~t~pLl~~~dg--~KmgKS~~~~i~l~~~~~~~~i~~~d~~D~~~~Ki~k-~~t~~~~--------------  263 (377)
T TIGR00234       201 NLPSLGFGLTVPLLTPADG--EKMGKSGGGAVSLDEGKYDFYQFWINTPDEDVKKILK-LFTFLGL--------------  263 (377)
T ss_pred             hcCCCceeeceeeecCCCC--CCccCCCCCcccCCccHhhhhhhhcCCcHHHHHHHHH-HcCCCcH--------------
Confidence            9977777788899999997  79999942          3788888889999999999 9997532              


Q ss_pred             cccchhhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHH
Q 022791          218 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER  265 (292)
Q Consensus       218 ~~~~~~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~p  265 (292)
                                    +++++|.+  ..+ -++.+.|+.+|..|++.++.
T Consensus       264 --------------~ei~~l~~--~~~-~~~~~~q~~la~ei~~~vhg  294 (377)
T TIGR00234       264 --------------EEIEALVE--LKG-PSPREVKENLAKEITKYVHG  294 (377)
T ss_pred             --------------HHHHHHHH--hcc-cCHHHHHHHHHHHHHHHhcC
Confidence                          34555544  222 47888999999888888864

This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=4.5e-30  Score=243.97  Aligned_cols=241  Identities=22%  Similarity=0.204  Sum_probs=186.6

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHHH----hchhhhh-hccCCCC-ceeEecCCcccch-hhhHhHH
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLAR----ENAKDII-ACGFDVT-KTFIFSDFDYVGG-AFYKNMV   73 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~----~~~~~~l-A~Gldp~-k~~i~~qs~~~~~-~~~~~~~   73 (292)
                      .+++||++ |+.++++|||+||+++++ ...++.+..+.    ++++.+. ++|.+++ ++.+..+|+|... .|+..+.
T Consensus        56 kL~~fQ~a-Gh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~  134 (401)
T COG0162          56 KLRRFQDA-GHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLR  134 (401)
T ss_pred             HHHHHHHC-CCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHH
Confidence            57889995 999999999999999987 77777777665    4444443 6787777 8988899999754 7888888


Q ss_pred             Hhhhheeecceeeccc------cCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcc
Q 022791           74 KVAKCVTYNKVVGIFG------FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR  147 (292)
Q Consensus        74 ~l~r~~t~~~~~~~~g------~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r  147 (292)
                      ++++++|++++.++..      ..+++++.+|+||+|||+        |++.++.|   +..+|.|||.++.++||+++|
T Consensus       135 ~~g~~~sv~rml~~d~~~~R~~~~~~is~~Ef~YpLmQay--------D~~~L~~d---lq~GG~DQ~~ni~~grdl~rr  203 (401)
T COG0162         135 DVGKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLLQAY--------DFVYLNKD---LQLGGSDQWGNILAGRDLIRR  203 (401)
T ss_pred             HHHhHccHHHHHHhhhHHHHhccCCCCchhhhhhHHHHHH--------HHHHHccc---hhcCChHHHHHHHHHHHHHHH
Confidence            8888888888877532      224589999999999999        89999998   689999999999999999999


Q ss_pred             cCCCCccchhccccccccCCcccccccCCC---------ceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCcccc
Q 022791          148 IGYHKPALIESSFFPALQGETGKMSASDPN---------SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD  218 (292)
Q Consensus       148 ~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~---------s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~  218 (292)
                      +|++++.++++|+|+|++|  +|||||..+         |.|.+.+.+..|..|+++ +||                   
T Consensus       204 ~g~~~~~~lt~PLL~~ldG--~KmgKs~~~a~~~~s~~~Sp~~~yq~~~~i~D~~~~-~~~-------------------  261 (401)
T COG0162         204 LGQKKVVGLTTPLLTGLDG--KKMGKSEGGAVWLDSEKTSPYDFYQYWMNIEDADVK-RFL-------------------  261 (401)
T ss_pred             hCCCCeEEEEeccccCCCC--CcccccCCCceEccCCCCCcHhhhhcHhcCcHHHHH-HHH-------------------
Confidence            9999999999999999999  488888654         344444455555555555 544                   


Q ss_pred             ccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhccc
Q 022791          219 IPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR  285 (292)
Q Consensus       219 ~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~  285 (292)
                            ..++. +.+++++|.+....+. ++.++|+.||..++...++-...++...  ..++.+..+
T Consensus       262 ------~~~t~l~~~eI~~i~~~~~~~~-~~r~~k~~LA~e~~~~~hG~~~a~~a~~--~~~~~F~~g  320 (401)
T COG0162         262 ------KLLTFLSLEEIEEIEKYVLKGP-EPREAKKLLAKEVTKLVHGEEAAEAAEE--EFEKLFSEG  320 (401)
T ss_pred             ------HHhCcCChHHHHHHHHHhhcCC-ChHHHHHHHHHHhhHhhcCHHHHHHHHH--HHHHHHhcC
Confidence                  33321 2267888888777665 8889999999999999887665555444  355555554

>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1.7e-12  Score=121.19  Aligned_cols=231  Identities=15%  Similarity=0.121  Sum_probs=157.7

Q ss_pred             hhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHh---chhhhh-------hccCCCCceeEecCCcc
Q 022791            3 TKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARE---NAKDII-------ACGFDVTKTFIFSDFDY   63 (292)
Q Consensus         3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~---~~~~~l-------A~Gldp~k~~i~~qs~~   63 (292)
                      +=|+|.+ |+.++-+|++.+|-++++         ...+.+++|++.   .+..+.       -+|..-.+-+|+.+++|
T Consensus        88 L~hfqr~-Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW  166 (467)
T KOG2623|consen   88 LIHFQRA-GHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGSSQGKYIIVNNSDW  166 (467)
T ss_pred             HHHHHHc-CCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCcccCceeEeechHH
Confidence            3478885 999999999999999754         223345556542   222222       23433345588888887


Q ss_pred             cch----hhhHhH---HHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCccc-ccccccccCC
Q 022791           64 VGG----AFYKNM---VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLR-CLIPCAIDQD  135 (292)
Q Consensus        64 ~~~----~~~~~~---~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~-~~vpvG~DQ~  135 (292)
                      -+.    .|+..+   +++..|.....++.++.-.++.++.+|+|-+|||.        |.+.+-.... |++.+|.||+
T Consensus       167 ~~d~~llDFLa~vGrh~RvgsMLar~SV~~RLes~~GlSftEFtYQ~lQAY--------Dfy~L~~~~g~~~QlGGsDQw  238 (467)
T KOG2623|consen  167 YKDIKLLDFLAEVGRHFRVGSMLARDSVKSRLESPNGLSFTEFTYQLLQAY--------DFYHLYENYGCRFQLGGSDQW  238 (467)
T ss_pred             hhhchHHHHHHHhchhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHH--------hHHHHHHhcCeeEEecccccc
Confidence            542    455554   66777777777777766567789999999999999        6653222222 4899999999


Q ss_pred             CccccccccCcccCC--CCccchhccccccccCCcccccccCCCceeEecCC---HHHHHHHhhhccccCCcccHHHHHH
Q 022791          136 PYFRMTRDVAPRIGY--HKPALIESSFFPALQGETGKMSASDPNSAIYVTDS---AKAIKNKINKYAFSGGQESVELHRK  210 (292)
Q Consensus       136 ~h~elaR~ia~r~n~--~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~---~~~I~kKI~k~A~t~~~~~~~~~~~  210 (292)
                      .|+..+-|+.+|+-.  ..+..+..|+|.+-+|  .|..||..| +|||.-+   |-.+++-.-+ +             
T Consensus       239 GNitaG~dlI~ki~~~~~~vfGlT~PLlTsstG--~KlGKSaGn-AvWLdp~~tspy~lYQfF~~-~-------------  301 (467)
T KOG2623|consen  239 GNITAGTDLIRKIMPIQAFVFGLTFPLLTSSTG--AKLGKSAGN-AVWLDPSKTSPYHLYQFFAS-L-------------  301 (467)
T ss_pred             cccchHHHHHHHhcccccceeeeeeeeEecCcc--hhhccCCCc-eEEecCccCCcHHHHHHHHh-C-------------
Confidence            999999999988764  3456677899999888  799999987 9999754   7777777666 3             


Q ss_pred             hCCCccccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHH
Q 022791          211 LGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER  265 (292)
Q Consensus       211 ~~~~p~~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~p  265 (292)
                          |+.+ +-.+|..|+. +-+++++|.+...+. -...-.-+.||+.|..+++.
T Consensus       302 ----pDd~-v~k~LklfTfl~l~eI~~I~~~H~k~-P~~r~aQ~~LA~eVTr~VHG  351 (467)
T KOG2623|consen  302 ----PDDD-VEKFLKLFTFLPLEEIKQILEEHRKE-PSQRIAQKLLAAEVTRMVHG  351 (467)
T ss_pred             ----chhH-HHHHHHHHhcCCHHHHHHHHHHHhcC-hhhhhHHHHHHHHHHHHHcc
Confidence                2111 1244554432 445677776666532 34445667788888888765

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase

Probab=98.87  E-value=1.2e-09  Score=98.11  Aligned_cols=156  Identities=12%  Similarity=0.063  Sum_probs=108.7

Q ss_pred             hhhHHh-hcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCcee-------EecCCcccchhhhHhHHH
Q 022791            3 TKYLQD-AFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------IFSDFDYVGGAFYKNMVK   74 (292)
Q Consensus         3 ~~~lQ~-~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~-------i~~qs~~~~~~~~~~~~~   74 (292)
                      ..|+.- +.|..+++-|.|    |+   ......++...+.+++..+|+++++..       +|.||+-. ..|..-+-+
T Consensus        24 ~n~l~ar~~~G~~ilRieD----td---~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r~-~~y~~~~~~   95 (239)
T cd00808          24 FNYLFARKHGGKFILRIED----TD---QERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQSERL-EIYRKYAEK   95 (239)
T ss_pred             HHHHHHHHcCCeEEEEECc----CC---CCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEeeeCCH-HHHHHHHHH
Confidence            456322 256667777788    43   122344556666777778899999854       78898642 233333333


Q ss_pred             hhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCcc
Q 022791           75 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA  154 (292)
Q Consensus        75 l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~  154 (292)
                      |...          |      -|..+|++.+++        |....+.   |+|+.|.|+..|...-+.+++.||.+.|.
T Consensus        96 L~~~----------g------dg~ptY~~a~~v--------DD~~~~i---thViRG~D~~~~t~~q~~l~~aLg~~~p~  148 (239)
T cd00808          96 LLEK----------G------DGFPTYHLANVV--------DDHLMGI---THVIRGEEHLSSTPKQILLYEALGWEPPK  148 (239)
T ss_pred             HHHc----------C------CCCcccccHHHH--------hHHhcCC---CEEEEChhhhhChHHHHHHHHHcCCCCCc
Confidence            3211          1      378899999999        6666676   59999999999999999999999999998


Q ss_pred             chhccccccccCCcccccccCCCceeEec----CCHHHHHHHhhh
Q 022791          155 LIESSFFPALQGETGKMSASDPNSAIYVT----DSAKAIKNKINK  195 (292)
Q Consensus       155 ~l~~~~lpgL~g~~~KMSkS~~~s~I~L~----D~~~~I~kKI~k  195 (292)
                      ..+.+++++.+|  .||||+..+.+|.-.    -+|+.|..-+..
T Consensus       149 ~~h~pll~~~~g--~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~~  191 (239)
T cd00808         149 FAHLPLILNPDG--KKLSKRKGDTSISDYREEGYLPEALLNYLAL  191 (239)
T ss_pred             eEeeccccCCCC--CcccCCCCCccHHHHHHCCCCHHHHHHHHHH
Confidence            888899999988  799999875333222    236666655544

Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase

Probab=98.61  E-value=1.3e-09  Score=90.28  Aligned_cols=65  Identities=17%  Similarity=0.072  Sum_probs=55.8

Q ss_pred             CCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCC-CccchhccccccccCCcccccccC
Q 022791          101 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASD  175 (292)
Q Consensus       101 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~-~p~~l~~~~lpgL~g~~~KMSkS~  175 (292)
                      ||+.|+|        |++.+.....+++++|.||.+|++..+++++++|.+ +|.+++.++|++.+|  +|||||.
T Consensus        78 y~~~~~a--------~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g--~KmSks~  143 (143)
T cd00802          78 YMFLQAA--------DFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADG--TKMSKSK  143 (143)
T ss_pred             HHHHHHH--------HHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCC--CcCCCCC
Confidence            9999999        777666633358999999999999999999999864 688888999999886  7999984

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase

Probab=97.90  E-value=1.3e-05  Score=71.76  Aligned_cols=154  Identities=11%  Similarity=0.121  Sum_probs=99.4

Q ss_pred             hhh-HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhheee
Q 022791            3 TKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY   81 (292)
Q Consensus         3 ~~~-lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~   81 (292)
                      ..| +-.++|..+++-|=|    |+   ...........++.++..+|++.+.- ++.||+-. ..|...+-+|...   
T Consensus        24 ~n~l~Ar~~~G~~iLRieD----tD---~~R~~~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~-~~y~~~~~~L~~~---   91 (230)
T cd00418          24 FNFAFARKYGGKFILRIED----TD---PERSRPEYVESILEDLKWLGLDWDEG-PYRQSDRF-DLYRAYAEELIKK---   91 (230)
T ss_pred             HHHHHHHHcCCeEEEEeCc----CC---CCCCChHHHHHHHHHHHHcCCCCCCC-eeehhcCH-HHHHHHHHHHHHc---
Confidence            455 333467777777666    22   11223455566777777899999864 56788653 2333333333221   


Q ss_pred             cceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcccc
Q 022791           82 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFF  161 (292)
Q Consensus        82 ~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~l  161 (292)
                                 +      .||..+-|-    .++|.+. +.   |+|.-|.|+..+-..-+.+++.+|.++|...+.|+|
T Consensus        92 -----------g------g~p~Y~la~----vvDD~~~-gI---ThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll  146 (230)
T cd00418          92 -----------G------GYPLYNFVH----PVDDALM-GI---THVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRL  146 (230)
T ss_pred             -----------C------CCccccccc----ccccccc-CC---CEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeee
Confidence                       1      455555542    2336654 33   699999999999999999999999999999999999


Q ss_pred             ccccCCcccccccCCCceeEec----CCHHHHHHHhhh
Q 022791          162 PALQGETGKMSASDPNSAIYVT----DSAKAIKNKINK  195 (292)
Q Consensus       162 pgL~g~~~KMSkS~~~s~I~L~----D~~~~I~kKI~k  195 (292)
                      .+.+|  +|||||+.+.+|.-.    -.|+.|..-+..
T Consensus       147 ~~~~g--~KLSKr~~~~~i~~~r~~G~~p~ai~~~l~~  182 (230)
T cd00418         147 LLEDG--TKLSKRKLNTTLRALRRRGYLPEALRNYLAL  182 (230)
T ss_pred             eCCCC--CCccCcCCCcCHHHHHHCCCcHHHHHHHHHH
Confidence            99887  799999865333221    235555544443

Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed

Probab=97.61  E-value=4.3e-05  Score=76.13  Aligned_cols=55  Identities=24%  Similarity=0.374  Sum_probs=47.2

Q ss_pred             cccccccCCC-ccccccccCc-ccCCCCccchhccccccccCCcccccccCCCceeEecC
Q 022791          127 LIPCAIDQDP-YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD  184 (292)
Q Consensus       127 ~vpvG~DQ~~-h~elaR~ia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  184 (292)
                      +.|.|.||.. +..+++.+++ .+|.+.|..+...++..-+|  +|||||.+| .|.+.|
T Consensus       237 ~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G--~KMSKSkGN-~i~~~d  293 (510)
T PRK00750        237 FEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKG--EKISKSKGN-VITIED  293 (510)
T ss_pred             EEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCC--CcccccCCC-ccCHHH
Confidence            6899999999 9999999999 99998898877777776555  799999976 777654

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=96.66  E-value=0.0012  Score=63.68  Aligned_cols=45  Identities=13%  Similarity=0.230  Sum_probs=38.6

Q ss_pred             hHHHHHHHHhhcCC---CcccHHHHH-----HHHHHHHHHHHHHHHHHhhhhH
Q 022791          231 DAELEHIKKEYGAG---GMLTGEVKQ-----RLAKVLTELVERHQVARAAVTD  275 (292)
Q Consensus       231 ~~~~eel~~~y~~g---~l~~~~lK~-----~la~~i~~~l~pir~~~~~~~~  275 (292)
                      .+.+++.+..|.+|   .+++.++|.     .++..+...|.|.|....+...
T Consensus       307 ~~a~~~~~~~F~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr~i~  359 (401)
T COG0162         307 EAAEEEFEKLFSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARRLIQ  359 (401)
T ss_pred             HHHHHHHHHHHhcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHhhcc
Confidence            45788899999988   899999999     8888899999999988776443

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase

Probab=96.20  E-value=0.00097  Score=63.47  Aligned_cols=55  Identities=29%  Similarity=0.461  Sum_probs=44.1

Q ss_pred             cccccccCCCc---cccccccCc-ccCCCCccchhccccccccCCcccccccCCCceeEecC
Q 022791          127 LIPCAIDQDPY---FRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD  184 (292)
Q Consensus       127 ~vpvG~DQ~~h---~elaR~ia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  184 (292)
                      .-|+|.||..|   +..++.+++ .||.+.|..+...++ .+.|. .|||||.+| .|.+.|
T Consensus       230 ~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V-~l~gg-~KMSKSkGn-vI~~~d  288 (353)
T cd00674         230 FEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFI-GLKGG-GKMSSSKGN-VITPSD  288 (353)
T ss_pred             EEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeE-EeCCC-CccCCCCCC-cCCHHH
Confidence            67999999999   999999999 999988877666655 35552 699999876 666644

Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase

Probab=93.38  E-value=0.12  Score=46.79  Aligned_cols=145  Identities=14%  Similarity=0.134  Sum_probs=87.1

Q ss_pred             hh-HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhh-hheee
Q 022791            4 KY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVA-KCVTY   81 (292)
Q Consensus         4 ~~-lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~-r~~t~   81 (292)
                      .| +...+|..+++=|-|.    +.+. ..........+.+++..+|++++.  ++.||+-.+ .|...+-+|- +-.-|
T Consensus        25 ~~l~Ar~~~G~~ilRieDt----D~~r-~~~~~~~~~~i~~dL~wLGl~~d~--~~~qS~r~~-~y~~~~~~Li~~G~aY   96 (240)
T cd09287          25 NGEYAKMYGGKFILRFDDT----DPRT-KRPDPEAYDMIPEDLEWLGVKWDE--VVIASDRIE-LYYEYARKLIEMGGAY   96 (240)
T ss_pred             HHHHHHHcCCEEEEeeCcC----CCCc-ccchHHHHHHHHHHHHHcCCCCCC--ccchhccHH-HHHHHHHHHHHcCCcc
Confidence            44 3334677778777773    2212 012333334577788899999984  678887542 2322222221 11111


Q ss_pred             cceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcccc
Q 022791           82 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFF  161 (292)
Q Consensus        82 ~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~l  161 (292)
                      .  ....|   +   -.++||..+-|-.    ++|.+.. .   |+|.-|.|-..+-..=.-+.+.||.+.|...+.|+|
T Consensus        97 ~--~~~~~---~---~~~i~ptY~la~v----VDD~~~g-I---ThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll  160 (240)
T cd09287          97 V--HPRTG---S---KYRVWPTLNFAVA----VDDHLLG-V---THVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRL  160 (240)
T ss_pred             c--CcccC---C---cEEEEEcccccee----eeccccC-C---CeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeee
Confidence            1  00101   1   1245788877632    3465442 2   689999998887777777888899999988888888


Q ss_pred             ccccCCcccccccC
Q 022791          162 PALQGETGKMSASD  175 (292)
Q Consensus       162 pgL~g~~~KMSkS~  175 (292)
                      .. .|  .||||.+
T Consensus       161 ~~-~~--~kLSKR~  171 (240)
T cd09287         161 KI-EG--GKLSTSK  171 (240)
T ss_pred             cC-CC--Ceecccc
Confidence            53 44  7999986

Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed

Probab=92.72  E-value=0.099  Score=51.90  Aligned_cols=66  Identities=15%  Similarity=0.115  Sum_probs=51.1

Q ss_pred             ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecC------CHHHHHHHhhh
Q 022791          126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK  195 (292)
Q Consensus       126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~I~kKI~k  195 (292)
                      |+|..|.||..|.-.-..+.+.||.+.|...|.++|.+++|  +||||.+.  .+.+.+      .|+.+..-+.+
T Consensus       209 thvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g--~klSKR~g--~~~l~~l~~~G~~p~Ai~n~l~~  280 (476)
T PRK01406        209 THVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDG--KKLSKRHG--ATSVEQYRDMGYLPEALLNYLAL  280 (476)
T ss_pred             CEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccCcCC--ccCHHHHHHCCCCHHHHHHHHHH
Confidence            58889999999998888899999998898888888888887  79999975  444432      35555544443

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=92.03  E-value=0.07  Score=57.06  Aligned_cols=56  Identities=25%  Similarity=0.126  Sum_probs=36.9

Q ss_pred             cCCCcccccccccccCCC---ccccccccCcccCCCCcc-chhccccccccCCcccccccCCCceeE
Q 022791          119 SGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIY  181 (292)
Q Consensus       119 ~~~ad~~~~vpvG~DQ~~---h~elaR~ia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~  181 (292)
                      .+.+|   +...|.||..   |-.+-..++- +|.+.+. ++.|.++...+|  .|||||.+| .|.
T Consensus       543 ~~P~D---l~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G--~KMSKSlGN-vId  602 (912)
T PRK05743        543 GYPAD---LYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKG--RKMSKSLGN-VID  602 (912)
T ss_pred             CCCce---EEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCC--CCCCCCCCC-cCC
Confidence            35565   6789999973   3344444443 5555553 445888888887  799999987 443

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family

Probab=91.70  E-value=0.36  Score=47.84  Aligned_cols=66  Identities=15%  Similarity=0.132  Sum_probs=51.9

Q ss_pred             ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecC------CHHHHHHHhhh
Q 022791          126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK  195 (292)
Q Consensus       126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~I~kKI~k  195 (292)
                      ++|..|.||..|...-..+.+.+|.+.|...+.+++.+++|  +||||..+  .+.|.+      .|+.+..-+..
T Consensus       199 thvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g--~kLSKR~g--~~~l~~l~~~g~~p~a~~~~~~~  270 (470)
T TIGR00464       199 THVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG--KKLSKRDG--ATSIMQFKEQGYLPEALINYLAL  270 (470)
T ss_pred             CEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC--ccccccCC--CccHHHHHHCCCCHHHHHHHHHH
Confidence            57889999999998888999999998888888888888888  79999975  444432      45555555544

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases

Probab=91.50  E-value=0.03  Score=52.20  Aligned_cols=53  Identities=21%  Similarity=0.071  Sum_probs=34.1

Q ss_pred             cccccccCC-CccccccccCcccCCC-Cc-cchhccccccccCCcccccccCCCceeEe
Q 022791          127 LIPCAIDQD-PYFRMTRDVAPRIGYH-KP-ALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       127 ~vpvG~DQ~-~h~elaR~ia~r~n~~-~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +..+|.||. +|++.-.-.+.-++.. .| .++.+.++..-.|  +|||||.+| .|++
T Consensus       229 i~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~KmSKS~gn-~v~~  284 (312)
T cd00668         229 WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGG--QKMSKSKGN-VIDP  284 (312)
T ss_pred             EEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCC--ccccccCCC-cCCH
Confidence            578999999 7766555544444433 33 3334666653333  799999987 6665

Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.

>PRK01611 argS arginyl-tRNA synthetase; Reviewed

Probab=91.31  E-value=0.038  Score=55.19  Aligned_cols=59  Identities=20%  Similarity=0.306  Sum_probs=41.9

Q ss_pred             cccccccCCCccccccccCcccCCCCcc---chh--ccccccccCCcccccccCCCceeEecCCHHH
Q 022791          127 LIPCAIDQDPYFRMTRDVAPRIGYHKPA---LIE--SSFFPALQGETGKMSASDPNSAIYVTDSAKA  188 (292)
Q Consensus       127 ~vpvG~DQ~~h~elaR~ia~r~n~~~p~---~l~--~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~  188 (292)
                      +-.+|.||..|+.-...+++.+|+.++.   .++  ..++.+=+|  +|||||.+| .|.+.|==++
T Consensus       276 i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g--~KMSkR~Gn-~i~l~dll~~  339 (507)
T PRK01611        276 IYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEG--VKMSTRAGN-VVTLDDLLDE  339 (507)
T ss_pred             EEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCC--CcccCCCCc-eeEHHHHHHH
Confidence            4579999999999999999999986432   222  234444343  799999986 7777554333

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases

Probab=90.18  E-value=0.06  Score=51.82  Aligned_cols=52  Identities=19%  Similarity=0.137  Sum_probs=32.5

Q ss_pred             cccccccCCCccccccccCc--ccCCCCc--cchhccccccccCCcccccccCCCceeEe
Q 022791          127 LIPCAIDQDPYFRMTRDVAP--RIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       127 ~vpvG~DQ~~h~elaR~ia~--r~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +...|.||...+-.. .++.  .+....|  .++.+.++.+++|  +|||||.+| .|.+
T Consensus       299 ~~~~G~D~~~~h~~~-~l~~~~~~~g~~p~~~v~~hg~v~~~~g--~KMSKS~Gn-~v~~  354 (382)
T cd00817         299 LLVTGHDIIFFWVAR-MIMRGLKLTGKLPFKEVYLHGLVRDEDG--RKMSKSLGN-VIDP  354 (382)
T ss_pred             eeeeecCcCchHHHH-HHHHHHHhhCCCchHHeEeeeeEECCCC--CCccccCCC-CCCH
Confidence            578999997654322 2222  1222234  3445778877777  799999987 6655

Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase

Probab=89.97  E-value=0.52  Score=42.53  Aligned_cols=145  Identities=14%  Similarity=0.128  Sum_probs=83.5

Q ss_pred             hhh-HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhh-hee
Q 022791            3 TKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAK-CVT   80 (292)
Q Consensus         3 ~~~-lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r-~~t   80 (292)
                      ..| +....|..+++=|=|    |+   ......+....++.++..+|++.+.  ++.||+-.+ .|..-+-+|.. -..
T Consensus        24 ~~~l~Ar~~~G~~iLRieD----tD---~~R~~~~~~~~I~~dL~wlGl~wD~--~~~QS~r~~-~Y~~~~~~L~~~g~a   93 (238)
T cd00807          24 LNFGYAKKYGGRCNLRFDD----TN---PEKEEEEYVDSIKEDVKWLGIKPYK--VTYASDYFD-QLYEYAEQLIKKGKA   93 (238)
T ss_pred             HHHHHHHHhCCEEEEEecC----CC---CcccchHHHHHHHHHHHHcCCCCCC--ceecccCHH-HHHHHHHHHHHcCCe
Confidence            445 333457777776655    22   2223445556777788889999984  677887542 23222222211 001


Q ss_pred             ecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccc
Q 022791           81 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF  160 (292)
Q Consensus        81 ~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~  160 (292)
                      |...  ..   .   -...+||..+-|-.    ++|.+..   | |+|.-|.|....-..=.-+.+.||.+.|..+.-..
T Consensus        94 Y~~~--~~---~---~~~~i~ptY~lA~v----VDD~~~g---I-ThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~h  157 (238)
T cd00807          94 YVHH--RT---G---DKWCIYPTYDFAHP----IVDSIEG---I-THSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSR  157 (238)
T ss_pred             ecCC--CC---C---CCEEEEeccccceE----eeccccC---C-CeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEE
Confidence            1100  00   0   12335788877622    3466543   2 68999999887766666678889998886443223


Q ss_pred             cccccCCcccccccCC
Q 022791          161 FPALQGETGKMSASDP  176 (292)
Q Consensus       161 lpgL~g~~~KMSkS~~  176 (292)
                      + +.+|  .|+||++.
T Consensus       158 l-n~~g--~kLSKR~~  170 (238)
T cd00807         158 L-NLTY--TVMSKRKL  170 (238)
T ss_pred             E-CCCC--CCccCcCc
Confidence            3 6666  79999974

Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated

Probab=89.65  E-value=0.082  Score=52.24  Aligned_cols=60  Identities=18%  Similarity=0.119  Sum_probs=34.7

Q ss_pred             ccccCCCcccccccccccC-CCccccccccCc---ccCCCCccchhccccccccCCcccccccCCCceeEec
Q 022791          116 HLFSGKDHLRCLIPCAIDQ-DPYFRMTRDVAP---RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT  183 (292)
Q Consensus       116 Dil~~~ad~~~~vpvG~DQ-~~h~elaR~ia~---r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  183 (292)
                      .+|...-|   +-++|.|. .+|+  .+++|.   -+|.|-+-...+.-+..++|  +|||||.+| .|.+.
T Consensus       215 ~~lg~~~D---ih~gG~DlifpHh--~neiaqs~a~~g~p~~~~w~H~g~v~~~G--~KMSKS~GN-~i~~~  278 (463)
T PRK00260        215 KYLGETFD---IHGGGADLIFPHH--ENEIAQSEAATGKPFANYWMHNGFVTVNG--EKMSKSLGN-FFTIR  278 (463)
T ss_pred             HhcCCCcc---eecCccccCCCch--HhHHHHHHHhcCCCcceEEEEccEEccCC--CcccCcCCC-CCCHH
Confidence            45554444   45899995 4565  455655   24522222334433345777  799999987 55553

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases

Probab=88.95  E-value=0.078  Score=49.63  Aligned_cols=53  Identities=21%  Similarity=0.259  Sum_probs=31.5

Q ss_pred             cccccccCCCcc----ccccccCcccCC---CCccch-hccccccccCCcccccccCCCceeEec
Q 022791          127 LIPCAIDQDPYF----RMTRDVAPRIGY---HKPALI-ESSFFPALQGETGKMSASDPNSAIYVT  183 (292)
Q Consensus       127 ~vpvG~DQ~~h~----elaR~ia~r~n~---~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~  183 (292)
                      +-.+|.||.+++    .+-..++...|+   +.|..+ .+.+|. ++|  +|||||.+| .|++.
T Consensus       227 i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g--~KmSkS~Gn-~v~~~  287 (314)
T cd00812         227 IYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEG--EKMSKSKGN-VVTPD  287 (314)
T ss_pred             eeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCc--cccCCcCCC-CCCHH
Confidence            457899996633    233334444443   344333 345544 566  799999986 77663

Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>TIGR00392 ileS isoleucyl-tRNA synthetase

Probab=88.60  E-value=0.097  Score=55.62  Aligned_cols=53  Identities=26%  Similarity=0.205  Sum_probs=32.4

Q ss_pred             cccccccCCC---ccccccccCcccCCCCcc-chhccccccccCCcccccccCCCceeEec
Q 022791          127 LIPCAIDQDP---YFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVT  183 (292)
Q Consensus       127 ~vpvG~DQ~~---h~elaR~ia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  183 (292)
                      +...|.||..   |..+-..++- ++.+.|. ++.+.++...+|  +|||||.+| .|...
T Consensus       567 ~~i~G~Di~r~Wf~~~~~~~~~~-~~~~P~k~v~~hG~vl~~~G--~KMSKSkGN-vI~p~  623 (861)
T TIGR00392       567 FILEGSDQTRGWFYSSLAIGTAL-FGQAPYKNVITHGFTLDEKG--RKMSKSLGN-VVDPL  623 (861)
T ss_pred             EEEEecchhccHHHHHHHHHHHH-cCCCChHhhEecceEECCCC--CCcCCCCCC-CCCHH
Confidence            6789999976   2222222221 3444443 344777776676  799999987 66543

The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.

>PRK11893 methionyl-tRNA synthetase; Reviewed

Probab=88.28  E-value=0.17  Score=50.29  Aligned_cols=52  Identities=27%  Similarity=0.233  Sum_probs=33.4

Q ss_pred             cccccccCCCcc---ccccccCcccCCCCc-cchhccccccccCCcccccccCCCceeEecC
Q 022791          127 LIPCAIDQDPYF---RMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD  184 (292)
Q Consensus       127 ~vpvG~DQ~~h~---elaR~ia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  184 (292)
                      +...|.||..++   ..+.-.|-  +.+.| .++.+.++. ++|  +|||||.+| .|.+.|
T Consensus       257 ~~~~G~D~~~~h~~~~~a~~~a~--~~~~p~~~~~~g~v~-~~G--~KMSKS~GN-~i~~~d  312 (511)
T PRK11893        257 VHLIGKDILRFHAVYWPAFLMAA--GLPLPKRVFAHGFLT-LDG--EKMSKSLGN-VIDPFD  312 (511)
T ss_pred             ceEecccccccchhHHHHHHHhC--CCCCCCEEEeeccEE-ECC--eeecccCCc-EEcHHH
Confidence            468899998852   22332332  45556 444567765 566  799999986 777643

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases

Probab=87.72  E-value=0.099  Score=49.49  Aligned_cols=53  Identities=26%  Similarity=0.176  Sum_probs=31.7

Q ss_pred             cccccccCCC---ccccccccCcccCCCCc-cchhccccccccCCcccccccCCCceeEec
Q 022791          127 LIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT  183 (292)
Q Consensus       127 ~vpvG~DQ~~---h~elaR~ia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  183 (292)
                      +.+.|.||..   |..+..-++ -.+...| .++.+..+...+|  +|||||.+| .|++.
T Consensus       255 ~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g--~KmSKS~gn-~i~~~  311 (338)
T cd00818         255 FILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDG--RKMSKSLGN-YVDPQ  311 (338)
T ss_pred             EEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCC--CCCCCCCCC-cCCHH
Confidence            4677999974   333322222 2233333 3444777766677  799999987 66663

Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional

Probab=87.70  E-value=0.11  Score=51.85  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=53.0

Q ss_pred             ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeE-ec---CCHHHHHHHhhh
Q 022791          126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VT---DSAKAIKNKINK  195 (292)
Q Consensus       126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~---D~~~~I~kKI~k  195 (292)
                      ++|..|.||..|.-.-..+.+.+|...|...|.++|.+++|  +||||.+....|. +-   =.|+.|..-+..
T Consensus       198 thVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g--~KLSKR~g~~~i~~~r~~G~~Peai~n~la~  269 (513)
T PRK14895        198 THIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG--AKLSKRHGALGIEAYKDMGYLPESLCNYLLR  269 (513)
T ss_pred             CEEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCC--CccccccCchhHHHHHHCCCCHHHHHHHHHH
Confidence            57889999999988888889999998898889999999988  7999997643221 11   137777777664

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete

Probab=87.42  E-value=0.16  Score=50.89  Aligned_cols=54  Identities=26%  Similarity=0.385  Sum_probs=32.6

Q ss_pred             cccccccCCCcc---ccccccCc-ccCCCCccchhccccccccCCcccccccCCCceeEe
Q 022791          127 LIPCAIDQDPYF---RMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       127 ~vpvG~DQ~~h~---elaR~ia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      .-|.|.|+...-   ....++|+ -||...|..+..-. ..|.|.+.|||||.+| .|.+
T Consensus       228 ~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~-v~L~~~g~KMSKS~Gn-~itl  285 (515)
T TIGR00467       228 FEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEW-ISLKGKGGKMSSSKGD-VISV  285 (515)
T ss_pred             cccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEE-EEEcCCCccccCCCCC-CccH
Confidence            578999986532   44555665 56665665443222 2255555799999875 4443

This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.

>TIGR00435 cysS cysteinyl-tRNA synthetase

Probab=87.26  E-value=0.1  Score=51.58  Aligned_cols=61  Identities=16%  Similarity=0.073  Sum_probs=35.7

Q ss_pred             ccccCCCcccccccccccC-CCccccccccCcc-cCCCCccchhccccccccCCcccccccCCCceeEe
Q 022791          116 HLFSGKDHLRCLIPCAIDQ-DPYFRMTRDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       116 Dil~~~ad~~~~vpvG~DQ-~~h~elaR~ia~r-~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      .+|...-|   +-.+|.|. .+|++.-+-.+.- +|.+.+...++.-+..++|  +|||||.+| .|.+
T Consensus       214 ~~lg~~~D---ih~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~v~~~g--~KMSKS~GN-~i~~  276 (465)
T TIGR00435       214 KYLGDQID---IHGGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFLMIDN--EKMSKSLGN-FFTV  276 (465)
T ss_pred             HhcCCCce---eeccccccccchHHHHHHHHHHhcCCCCCcEEEEeeEEEecC--ccccccCCC-cCCH
Confidence            45555455   46899998 4666654444332 4533333333333345777  799999986 5554

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).

>TIGR00456 argS arginyl-tRNA synthetase

Probab=87.00  E-value=0.13  Score=52.13  Aligned_cols=65  Identities=12%  Similarity=0.136  Sum_probs=46.7

Q ss_pred             cccccccCCCccccccccCcccCCCCccch-hccccccccCCcccccccCCCceeEecCCHHHHHHHhhh
Q 022791          127 LIPCAIDQDPYFRMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK  195 (292)
Q Consensus       127 ~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k  195 (292)
                      +-.+|.||..|+.-...++..+|++.|.-+ ++..-+- .|  .|||||.+| .|.+.|=.++..++...
T Consensus       331 I~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V-~~--~kmSkr~Gn-~V~~~dll~~~~~ra~~  396 (566)
T TIGR00456       331 IYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMV-PL--GSMKTRRGN-VISLDNLLDEASKRAGN  396 (566)
T ss_pred             EEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEE-EC--CCCCccCCc-eeeHHHHHHHHHHHHHH
Confidence            557999999999999999999998766433 3332111 22  599999975 99998766665554444

This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional

Probab=86.69  E-value=0.15  Score=54.81  Aligned_cols=57  Identities=21%  Similarity=0.113  Sum_probs=34.1

Q ss_pred             cCCCcccccccccccCCC---ccccccccCcccCCCCc-cchhccccccccCCcccccccCCCceeEe
Q 022791          119 SGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       119 ~~~ad~~~~vpvG~DQ~~---h~elaR~ia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      .+.+|   +...|.||..   |-.+..-++ -.|.+++ .++.|.++...+|  +|||||.+| .|..
T Consensus       581 ~~PaD---~~~eG~Di~rgWF~s~ll~s~~-~~~~~P~k~V~~HG~vld~~G--~KMSKSlGN-vIdP  641 (961)
T PRK13804        581 KWPAD---LYLEGSDQHRGWFNSSLLESCG-TRGRAPYKAVLTHGFTLDEKG--EKMSKSLGN-TVSP  641 (961)
T ss_pred             CCCce---EEEEEcccccHHHHHHHHHHHH-hcCCCChhhEEEeccEECCCC--CCccCCCCC-cCCH
Confidence            45666   5789999975   111111111 0122233 4555888888887  799999987 5543

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional

Probab=86.59  E-value=0.19  Score=50.75  Aligned_cols=67  Identities=13%  Similarity=0.059  Sum_probs=51.5

Q ss_pred             ccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCC
Q 022791           99 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP  176 (292)
Q Consensus        99 l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~  176 (292)
                      ..||.++-|..    ++|. ..+.   |+|.-|.|...+-..=.-+.+.||.+.|...+.++|. ++|  .|||||..
T Consensus       278 ~i~PtY~fA~~----VDD~-l~GI---THViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~-~~g--~kLSKR~~  344 (567)
T PRK04156        278 RVWPTYNFAVA----VDDH-LLGV---THVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLK-IEG--FVLSTSKI  344 (567)
T ss_pred             EEEEEeccCce----eeec-CCCC---CeEEcccccccChHHHHHHHHHcCCCCceEEEcceec-CCC--ceeecccc
Confidence            45888877744    3344 3343   6999999998887777788888999899999988875 566  69999973

>PLN02843 isoleucyl-tRNA synthetase

Probab=85.13  E-value=0.23  Score=53.48  Aligned_cols=56  Identities=25%  Similarity=0.135  Sum_probs=34.0

Q ss_pred             cCCCcccccccccccCCC---ccccccccCcccCCCCc-cchhccccccccCCcccccccCCCceeE
Q 022791          119 SGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIY  181 (292)
Q Consensus       119 ~~~ad~~~~vpvG~DQ~~---h~elaR~ia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~  181 (292)
                      .+.+|   +...|.||..   |-.+..-++ -.|.+++ .++.|.++..-+|  +|||||.+| .|.
T Consensus       562 ~~PaD---l~~eG~Di~rgWf~s~l~~~~~-~~g~~Pfk~v~~HG~vld~~G--~KMSKSlGN-vI~  621 (974)
T PLN02843        562 SYPAD---LYLEGSDQHRGWFQSSLLTSVA-TKGKAPYKSVLTHGFVLDEKG--FKMSKSLGN-VVD  621 (974)
T ss_pred             CCCce---eeeeeccccchHHHHHHHHHHH-hcCCCccceEEEeccEECCCC--CCcCCCCCC-cCC
Confidence            35565   5788999987   222222221 1344332 4455788877777  899999987 443

>PRK05729 valS valyl-tRNA synthetase; Reviewed

Probab=84.73  E-value=0.18  Score=53.64  Aligned_cols=53  Identities=21%  Similarity=0.172  Sum_probs=34.9

Q ss_pred             cccccccCCCccccccccCcccC--CCCc--cchhccccccccCCcccccccCCCceeEec
Q 022791          127 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT  183 (292)
Q Consensus       127 ~vpvG~DQ~~h~elaR~ia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  183 (292)
                      +...|.||..+ =++|-++....  ...|  .++.|.++...+|  +|||||.+| .|+..
T Consensus       476 ~~~~G~Dii~~-W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKSlGN-vIdP~  532 (874)
T PRK05729        476 VLVTGFDIIFF-WVARMIMMGLHFTGQVPFKDVYIHGLVRDEQG--RKMSKSKGN-VIDPL  532 (874)
T ss_pred             cccccccccch-HHHHHHHHHHHhcCCCchhheEEeeeEECCCC--CCcccCCCC-CCCHH
Confidence            56889998875 34444443221  1345  4555888888888  799999987 66553

>PLN02381 valyl-tRNA synthetase

Probab=84.40  E-value=0.17  Score=54.96  Aligned_cols=56  Identities=23%  Similarity=0.212  Sum_probs=37.3

Q ss_pred             CCCcccccccccccCCCccccccccCccc--CCCCc--cchhccccccccCCcccccccCCCceeEe
Q 022791          120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRI--GYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       120 ~~ad~~~~vpvG~DQ~~h~elaR~ia~r~--n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      |.+|   +..-|.||. ++=++|-++..+  ....|  .++.|.+|.+-+|  .|||||.+| .|..
T Consensus       607 ~P~d---~~~~G~Dii-~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G--~KMSKS~GN-vIdP  666 (1066)
T PLN02381        607 YPTS---VLETGHDIL-FFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG--RKMSKSLGN-VIDP  666 (1066)
T ss_pred             CCCe---eeeecchhh-hhHHHHHHHHHHHhCCCCchHHheecceEECCCC--CCCCCCCCC-CCCH
Confidence            5565   456899998 444555554432  22456  3456899998888  799999987 5543

>PRK13208 valS valyl-tRNA synthetase; Reviewed

Probab=83.97  E-value=0.25  Score=52.15  Aligned_cols=51  Identities=24%  Similarity=0.233  Sum_probs=30.4

Q ss_pred             cccccccCCCccccccccCcc---cCCCCc--cchhccccccccCCcccccccCCCceeEe
Q 022791          127 LIPCAIDQDPYFRMTRDVAPR---IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       127 ~vpvG~DQ~~h~elaR~ia~r---~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +...|.||.... +++-++..   ++. .|  .++.+.++...+|  +|||||.+| .|.+
T Consensus       489 ~~~~G~Di~~~w-~~~~l~~~~~~~~~-~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p  544 (800)
T PRK13208        489 LRPQGHDIIRTW-LFYTILRAYLLTGK-LPWKNIMISGMVLDPDG--KKMSKSKGN-VVTP  544 (800)
T ss_pred             EEEeecchhhhH-HHHHHHHHHHhcCC-CCcceEEEeeEEECCCC--CCCCCCCCC-CCCH
Confidence            456899987621 12222111   222 34  3345778877777  799999987 5554

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family

Probab=83.68  E-value=0.34  Score=52.08  Aligned_cols=53  Identities=21%  Similarity=0.213  Sum_probs=30.4

Q ss_pred             cccccccCCC-cccccc--ccCcccCC-CCc-cchhccccccccCCcccccccCCCceeEecC
Q 022791          127 LIPCAIDQDP-YFRMTR--DVAPRIGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD  184 (292)
Q Consensus       127 ~vpvG~DQ~~-h~elaR--~ia~r~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  184 (292)
                      +...|.||.+ |+.+..  -.| -|+. +-| .++.+.++.. +|  +|||||.+| .|.+.|
T Consensus       576 ~~~~GkDii~~H~~~~i~~~~a-~~~~~~~Pk~i~~~G~vl~-~G--~KMSKSlGN-vI~p~d  633 (938)
T TIGR00395       576 WRISGKDLIPNHLTFYIFHHVA-IFPEKFWPRGIVVNGYVML-EG--KKMSKSKGN-VLTLEQ  633 (938)
T ss_pred             EEEEeeccccchHHHHHHHHHH-cCCccccCcEEEEeceEEe-CC--ccccCcCCC-CCCHHH
Confidence            5688999976 444321  111 0111 123 4445666654 66  899999987 665543

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.

>PRK12418 cysteinyl-tRNA synthetase; Provisional

Probab=83.41  E-value=0.25  Score=47.74  Aligned_cols=62  Identities=19%  Similarity=0.139  Sum_probs=34.4

Q ss_pred             ccccCCCcccccccccccC-CCccccccccCcc-cCC-CCccchhccccccccCCcccccccCCCceeEec
Q 022791          116 HLFSGKDHLRCLIPCAIDQ-DPYFRMTRDVAPR-IGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVT  183 (292)
Q Consensus       116 Dil~~~ad~~~~vpvG~DQ-~~h~elaR~ia~r-~n~-~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  183 (292)
                      .+|.-.-|   +--+|.|- -||+|.-+-...- +|. |-+-..++.-+...+|  +|||||..| .|.+.
T Consensus       209 ~~lg~~~D---IH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G--~KMSKSlGN-~i~~~  273 (384)
T PRK12418        209 NRLGSGFD---IQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDG--EKMSKSRGN-LVFVS  273 (384)
T ss_pred             HHcCCCcc---cccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCC--CcccCcCCC-cCCHH
Confidence            44444444   23567774 3666544333332 333 2223444555556677  799999987 66653

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6

Probab=83.39  E-value=0.57  Score=47.85  Aligned_cols=56  Identities=21%  Similarity=0.045  Sum_probs=30.7

Q ss_pred             CCCcccccccccccCCCccccccccCc--ccCCCC--ccchhccccccccCCcccccccCCCceeEe
Q 022791          120 GKDHLRCLIPCAIDQDPYFRMTRDVAP--RIGYHK--PALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       120 ~~ad~~~~vpvG~DQ~~h~elaR~ia~--r~n~~~--p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +.+|   +..-|.||....- .+-+..  .+....  +.++.+.++...+|  +|||||.+| .|.+
T Consensus       513 ~P~D---~~~~G~D~~~~W~-~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p  572 (601)
T PF00133_consen  513 YPVD---LYIEGKDQIRGWF-QSSLFLSVALFGKEPFKKVITHGFVLDEDG--RKMSKSKGN-VIDP  572 (601)
T ss_dssp             SSBS---EEEEEGGGTTTHH-HHHHHHHHHHSSSTSBSEEEEE--EEETTS--SB-BTTTTB---BH
T ss_pred             CCcc---cccCCccchhhHH-HHhHhhccccccCCchheeeecccccccce--eecccCCCc-ccCH
Confidence            4555   5788999976532 111111  111123  35566888888888  899999987 5543

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....

>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase

Probab=82.67  E-value=0.58  Score=43.10  Aligned_cols=82  Identities=12%  Similarity=0.088  Sum_probs=55.8

Q ss_pred             CCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCcee
Q 022791          101 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI  180 (292)
Q Consensus       101 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I  180 (292)
                      ||..+-|.    .++|.+..   | |+|.=|.|....--.=.-+.+.||.+.|...+.|+|.+.+|  .|+||++....|
T Consensus       170 ~ptY~fA~----vVDD~~~g---I-ThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g--~kLSKR~~~~~i  239 (272)
T TIGR03838       170 LFAYQLAV----VVDDAAQG---I-THVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADG--EKLSKQNGAPAL  239 (272)
T ss_pred             CccccChh----hhhcccCC---C-CEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhCCCC--CeeeccCCccch
Confidence            56666552    23455442   2 68899998877665556677888999999888999999998  799999864444


Q ss_pred             EecCCHHHHHHH
Q 022791          181 YVTDSAKAIKNK  192 (292)
Q Consensus       181 ~L~D~~~~I~kK  192 (292)
                      .=.+.++.+..-
T Consensus       240 ~~~~~~~~~~~~  251 (272)
T TIGR03838       240 DLSHPLPALLAA  251 (272)
T ss_pred             hcCCcHHHHHHH
Confidence            333444444433

This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional

Probab=82.61  E-value=0.24  Score=53.57  Aligned_cols=55  Identities=25%  Similarity=0.193  Sum_probs=34.9

Q ss_pred             CCCcccccccccccCCCccccccccCcccC--CCCc--cchhccccccccCCcccccccCCCceeE
Q 022791          120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIY  181 (292)
Q Consensus       120 ~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~  181 (292)
                      |.+|   +...|.||.. +=++|-++.-+.  .+.|  .++.|.+|.+-+|  .|||||.+| .|.
T Consensus       537 ~P~d---~~~~G~Dii~-~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G--~KMSKSlGN-vId  595 (995)
T PTZ00419        537 FPTS---LLETGSDILF-FWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQG--EKMSKSKGN-VID  595 (995)
T ss_pred             CCCc---EEEechhHHh-HHHHHHHHHHHHhcCCCChHHHhccceEECCCC--CCcccCCCC-cCC
Confidence            4455   5678888865 233333333221  1466  3556889988887  799999987 543

>PLN02286 arginine-tRNA ligase

Probab=82.55  E-value=0.67  Score=47.17  Aligned_cols=66  Identities=14%  Similarity=0.208  Sum_probs=47.1

Q ss_pred             ccccccccCCCccccccccCcccCCCCc------cchhccccccccCCcccccccCCCceeEecCCHHHHHHHhh
Q 022791          126 CLIPCAIDQDPYFRMTRDVAPRIGYHKP------ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN  194 (292)
Q Consensus       126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p------~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~  194 (292)
                      ++--+|.||..|+.-...+++.+|+.++      .++.-.+|-++.|  +||||-.++ .|.|.|==+++..+.+
T Consensus       330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g--~kmStR~G~-~v~L~dlldea~~~a~  401 (576)
T PLN02286        330 IIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG--KRFRTRSGE-VVRLVDLLDEAKSRSK  401 (576)
T ss_pred             EEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC--CcccCCCCC-eeEHHHHHHHHHHHHH
Confidence            4556899999999999999999997522      2334567766666  699987664 8888665555444333

>PRK14900 valS valyl-tRNA synthetase; Provisional

Probab=82.50  E-value=0.25  Score=53.73  Aligned_cols=54  Identities=19%  Similarity=0.126  Sum_probs=35.7

Q ss_pred             cccccccCCCccccccccCcccC--CCCc--cchhccccccccCCcccccccCCCceeEecC
Q 022791          127 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD  184 (292)
Q Consensus       127 ~vpvG~DQ~~h~elaR~ia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  184 (292)
                      +...|.||.. +=++|-++..+.  ...|  .++.|.+|..-+|  +|||||.+| .|+..|
T Consensus       494 ~~~~G~Dii~-~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G--~KMSKSkGN-vIdP~d  551 (1052)
T PRK14900        494 VMETGHDIIF-FWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKG--QKMSKTKGN-VIDPLV  551 (1052)
T ss_pred             hhcccccHHh-HHHHHHHHHHHHhcCCCccceeEecccEECCCC--CCccCCCCC-CCCHHH
Confidence            5678999974 445565554332  1345  3555888877777  799999987 666544

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=81.85  E-value=0.28  Score=52.97  Aligned_cols=56  Identities=20%  Similarity=0.035  Sum_probs=32.1

Q ss_pred             CCCcccccccccccCCCccccccccCc---ccCCCCc-cchhccccccccCCcccccccCCCceeEe
Q 022791          120 GKDHLRCLIPCAIDQDPYFRMTRDVAP---RIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       120 ~~ad~~~~vpvG~DQ~~h~elaR~ia~---r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +.+|   +...|.||.... +.+-++.   -+|.+++ .++.+.++...+|  +|||||.+| .|..
T Consensus       544 ~Pad---~~~~G~Di~r~W-f~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G--~KMSKSlGN-vIdP  603 (975)
T PRK06039        544 FPAD---FIVEGIDQTRGW-FYTLLALSTALFDRPPYKNVLVHGHVLDEDG--QKMSKSLGN-YVDP  603 (975)
T ss_pred             CCce---EEEechhhHhhH-HHHHHHHHHHhcCCCcccEEEEeeeEECCCC--CCcCCCCCC-cCCH
Confidence            4455   567899997521 1111111   1233322 3445777777677  799999987 5543

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase

Probab=81.64  E-value=0.25  Score=43.83  Aligned_cols=53  Identities=23%  Similarity=0.092  Sum_probs=30.1

Q ss_pred             cccccCC-CccccccccCcc-cCCCCccchhccccccccCCcccccccCCCceeEecC
Q 022791          129 PCAIDQD-PYFRMTRDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD  184 (292)
Q Consensus       129 pvG~DQ~-~h~elaR~ia~r-~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  184 (292)
                      -+|.|.. +|++.-+-...- +|.+.+....+.-+..++|  +|||||.+| .|.+.|
T Consensus       133 ~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g--~KMSKs~Gn-~v~~~d  187 (213)
T cd00672         133 GGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDG--EKMSKSLGN-FITVRD  187 (213)
T ss_pred             eecCCCCcChHHHHHHHHHHHhCCCCCcEEEEEEEEeccC--cchhhcCCC-ccCHHH
Confidence            4566654 565544433332 3443344444445556777  799999986 665543

Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>PLN02943 aminoacyl-tRNA ligase

Probab=81.61  E-value=0.36  Score=51.99  Aligned_cols=58  Identities=24%  Similarity=0.126  Sum_probs=37.4

Q ss_pred             CCCcccccccccccCCCccccccccCcccC--CCCc--cchhccccccccCCcccccccCCCceeEecC
Q 022791          120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD  184 (292)
Q Consensus       120 ~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  184 (292)
                      |.+|   +...|.||.. +=++|-++.-..  ...|  .+..|..+...+|  +|||||.+| .|...|
T Consensus       535 yP~d---l~~~G~Dii~-fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~  596 (958)
T PLN02943        535 YPTT---VLETGHDILF-FWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQG--RKMSKTLGN-VIDPLD  596 (958)
T ss_pred             CCCe---EEEEeehHHH-HHHHHHHHhhhhhcCCCChheEEEeccEECCCC--CcccCcCCC-CCCHHH
Confidence            4555   4677999984 455664443222  2345  3455888888888  899999987 665543

>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed

Probab=81.57  E-value=0.46  Score=44.32  Aligned_cols=66  Identities=12%  Similarity=0.092  Sum_probs=49.0

Q ss_pred             CCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCC
Q 022791          101 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP  176 (292)
Q Consensus       101 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~  176 (292)
                      +|..+-|-    -++|.+..   | |+|.=|.|....-..=.-+.+.||.+.|...+.|+|.+.+|  .||||++.
T Consensus       177 ~ptY~lA~----vVDD~~~g---I-ThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~H~pll~~~~g--~kLSKr~~  242 (299)
T PRK05710        177 LFAYQLAV----VVDDALQG---V-THVVRGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNADG--QKLSKQNG  242 (299)
T ss_pred             Cccccchh----HHhcccCC---C-CEEEeChhhhhcCHHHHHHHHHcCCCCCeEEEeecccCCCC--CcccccCC
Confidence            45555542    23355442   2 58888999877666666678889999999999999999998  79999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	292
2quh_A	477	Crystal Structures Of Human Tryptophanyl-Trna Synth		1e-97
1o5t_A	378	Crystal Structure Of The Aminoacylation Catalytic F		1e-97
2ake_A	384	Structure Of Human Tryptophanyl-Trna Synthetase In		1e-97
2quj_B	384	Crystal Structures Of Human Tryptophanyl-Trna Synth		1e-97
1ulh_A	390	A Short Peptide Insertion Crucial For Angiostatic A		1e-97
2azx_A	477	Charged And Uncharged Trnas Adopt Distinct Conforma		1e-93
1r6t_A	477	Crystal Structure Of Human Tryptophanyl-Trna Synthe		1e-93
1r6u_A	437	Crystal Structure Of An Active Fragment Of Human Tr		2e-93
3hv0_A	393	Tryptophanyl-Trna Synthetase From Cryptosporidium P		3e-76
3kt0_A	438	Crystal Structure Of S. Cerevisiae Tryptophanyl-Trn		1e-74
2ip1_A	432	Crystal Structure Analysis Of S. Cerevisiae Tryptop		1e-74
3i05_A	395	Tryptophanyl-Trna Synthetase From Trypanosoma Bruce		2e-74
3tze_A	406	Crystal Structure Of A Tryptophanyl-Trna Synthetase		3e-62
3foc_A	451	Tryptophanyl-Trna Synthetase From Giardia Lamblia L		9e-52
3jxe_A	392	Crystal Structure Of Pyrococcus Horikoshii Tryptoph		4e-47
3hzr_A	386	Tryptophanyl-Trna Synthetase Homolog From Entamoeba		3e-34
3a04_A	372	Crystal Structure Of Tryptophanyl-Trna Synthetase F		3e-15

>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase In Complex With Trp Length = 477

Iteration: 1
 Score =  352 bits (904), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 167/289 (57%), Positives = 212/289 (73%), Gaps = 2/289 (0%)
Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct: 178 IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSD 237
Query: 61  FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
            DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA            
Sbjct: 238 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 297
Query: 119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct: 298 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 357
Query: 179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct: 358 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 417
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 418 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466

>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment Of Human Tryptophanyl-Trna Synthetase Length = 378

Iteration: 1
 Score =  352 bits (903), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 167/289 (57%), Positives = 212/289 (73%), Gaps = 2/289 (0%)
Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct: 85  IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSD 144
Query: 61  FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
            DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA            
Sbjct: 145 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 204
Query: 119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct: 205 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 264
Query: 179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct: 265 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 324
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 325 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 373

>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex With Trna(Trp) Length = 384

Iteration: 1
 Score =  352 bits (903), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 167/289 (57%), Positives = 212/289 (73%), Gaps = 2/289 (0%)
Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct: 85  IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSD 144
Query: 61  FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
            DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA            
Sbjct: 145 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 204
Query: 119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct: 205 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 264
Query: 179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct: 265 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 324
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 325 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 373

>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity Of Human Tryptophanyl-Trna Synthetase Length = 390

Iteration: 1
 Score =  352 bits (903), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 167/289 (57%), Positives = 212/289 (73%), Gaps = 2/289 (0%)
Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct: 97  IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSD 156
Query: 61  FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
            DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA            
Sbjct: 157 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 216
Query: 119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct: 217 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 276
Query: 179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct: 277 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 336
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 337 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 385

>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations When Complexed With Human Tryptophanyl-Trna Synthetase Length = 477

Iteration: 1
 Score =  339 bits (869), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 163/289 (56%), Positives = 206/289 (71%), Gaps = 2/289 (0%)
Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct: 178 IFTKWLQDVFNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 237
Query: 61  FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
            DY G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA            
Sbjct: 238 LDYXGXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 297
Query: 119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG   K SASDPNS
Sbjct: 298 RDRTDIQCLIPCAIDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNS 357
Query: 179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct: 358 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIR 417
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           K+Y +G  LTGE+K+ L +VL  L+  HQ  R  VTDE+V  F   R L
Sbjct: 418 KDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 466

>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase Length = 477

Iteration: 1
 Score =  339 bits (869), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 163/289 (56%), Positives = 206/289 (71%), Gaps = 2/289 (0%)
Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct: 178 IFTKWLQDVFNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 237
Query: 61  FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
            DY G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA            
Sbjct: 238 LDYXGXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 297
Query: 119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG   K SASDPNS
Sbjct: 298 RDRTDIQCLIPCAIDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNS 357
Query: 179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct: 358 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIR 417
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           K+Y +G  LTGE+K+ L +VL  L+  HQ  R  VTDE+V  F   R L
Sbjct: 418 KDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 466

>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human Tryptophanyl-Trna Synthetase With Cytokine Activity Length = 437

Iteration: 1
 Score =  338 bits (867), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 163/289 (56%), Positives = 206/289 (71%), Gaps = 2/289 (0%)
Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct: 131 IFTKWLQDVFNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 190
Query: 61  FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 118
            DY G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA            
Sbjct: 191 LDYXGXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 250
Query: 119 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG   K SASDPNS
Sbjct: 251 RDRTDIQCLIPCAIDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNS 310
Query: 179 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct: 311 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIR 370
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           K+Y +G  LTGE+K+ L +VL  L+  HQ  R  VTDE+V  F   R L
Sbjct: 371 KDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 419

>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum Length = 393

Iteration: 1
 Score =  281 bits (719), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 139/282 (49%), Positives = 189/282 (67%), Gaps = 2/282 (0%)
Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFS 59
           +FTKYLQD FKVPLVIQLTDDEK ++K NL++EE+   A EN KDIIACGFD   TFIF+
Sbjct: 97  LFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFT 156
Query: 60  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXX 119
           + +Y+    Y +++++ K ++ +++  IFGF    ++GK +FP VQA             
Sbjct: 157 NLEYIA-ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFG 215
Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
           G+  + CL+P AIDQDPYFRM RDVAPR+GY KP+ I S F P+LQG   KMSAS  NS+
Sbjct: 216 GRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSS 275
Query: 180 IYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239
           I+V D+          YAFSGGQ + E  R+LGANL+VD+  +YL F +EDD +LE I K
Sbjct: 276 IFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGK 335
Query: 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 281
           +Y +G ML+GE+K  L + L +L + HQ  R A+ D+++  F
Sbjct: 336 KYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKF 377

>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna Synthet Length = 438

Iteration: 1
 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 141/288 (48%), Positives = 187/288 (64%), Gaps = 1/288 (0%)
Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFS 59
           +FTK+LQ+ F VPLVI+LTDDEK ++K+ L++ + +  ARENAKDIIA GFD   TFIFS
Sbjct: 125 VFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFS 184
Query: 60  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXX 119
           D  Y+GGAFY+ +V+V++ +T +    +FGF   D IGK  F  +Q              
Sbjct: 185 DLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLG 244
Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
             D   CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD  +A
Sbjct: 245 LPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTA 304
Query: 180 IYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239
           I++TD+          YAFSGGQ S +LHR+LG N +VD+  +YLSFF +DD  L+    
Sbjct: 305 IFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYD 364
Query: 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           +Y +G +L+GE+K+   + L E V+  Q  RA V +E +D FM    L
Sbjct: 365 KYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412

>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl Trna Synthetase Length = 432

Iteration: 1
 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 141/288 (48%), Positives = 187/288 (64%), Gaps = 1/288 (0%)
Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFS 59
           +FTK+LQ+ F VPLVI+LTDDEK ++K+ L++ + +  ARENAKDIIA GFD   TFIFS
Sbjct: 125 VFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFS 184
Query: 60  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXX 119
           D  Y+GGAFY+ +V+V++ +T +    +FGF   D IGK  F  +Q              
Sbjct: 185 DLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLG 244
Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
             D   CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD  +A
Sbjct: 245 LPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTA 304
Query: 180 IYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239
           I++TD+          YAFSGGQ S +LHR+LG N +VD+  +YLSFF +DD  L+    
Sbjct: 305 IFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYD 364
Query: 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           +Y +G +L+GE+K+   + L E V+  Q  RA V +E +D FM    L
Sbjct: 365 KYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412

>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei Length = 395

Iteration: 1
 Score =  275 bits (704), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 140/286 (48%), Positives = 188/286 (65%), Gaps = 3/286 (1%)
Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           MFTK+LQD+F+VPLVIQ+TDDEK  ++N+ +E+ + +  EN KDIIA GFD   TFIF D
Sbjct: 101 MFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRD 160
Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX-XX 119
           FDY+G   Y+ + K+ +  T ++V G FGF  ED+ G+  FP +QA              
Sbjct: 161 FDYMG-CMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPP 219
Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
              ++ CLIP AIDQDPYFR+TRD+APR+GY KPA+I S FFP L G  GKMS+S   +A
Sbjct: 220 SMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSS-GTA 278
Query: 180 IYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239
           + +TD+          +AFSGG  + + H  LGAN+EVD+P+++LSFFLEDD EL  +KK
Sbjct: 279 VLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKK 338
Query: 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 285
           EY  G ++TGEVK+ L   +T + + HQ  R  VTDE V  F + R
Sbjct: 339 EYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTR 384

>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From Encephalitozoon Cuniculi Bound To Tryptophan Length = 406

Iteration: 1
 Score =  235 bits (599), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/284 (40%), Positives = 177/284 (62%), Gaps = 4/284 (1%)
Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +  KY+QDAFK+ LVIQ+TDDEK +WK++ +E++    REN KDI+  GFD   T+IFS+
Sbjct: 124 LLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSN 183
Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXG 120
            +     F +N++K++K +  N+ + +FGF    +IG+V FP  +              G
Sbjct: 184 VE-ASHHFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKG 242
Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
                CL+P A+DQDP+FR+ RD A  +G  KP+ I  S  P L+G   KMSASDPNS+I
Sbjct: 243 A---MCLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSI 299
Query: 181 YVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
           Y+ D+          YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE  +  
Sbjct: 300 YLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSG 359
Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 284
           Y  G + + E+K++   V+ E V R+Q +R  VTD+ + AF+ +
Sbjct: 360 YIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDI 403

>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia Length = 451

Iteration: 1
 Score =  200 bits (508), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 131/341 (38%), Positives = 170/341 (49%), Gaps = 58/341 (17%)
Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAKDIIACGFDVTK----- 54
           +FTKYLQDAFK  +VIQ+TDDEK +  ++LS  E     REN KDIIACGFD  K     
Sbjct: 114 IFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFI 173
Query: 55  ----------------------------TFIFSDFDYVGGAFY--KNMVKVAKC----VT 80
                                       +F FS+   VG A +  K M+ V       + 
Sbjct: 174 NSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLP 233
Query: 81  YNKVVGIFGFTGEDHIGKVS--------------FPPVQAVXXXXXXXXXXXXGKDHLRC 126
           + +V    G   ED    VS                PV  V                  C
Sbjct: 234 FTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAM----C 289
Query: 127 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSX 186
           LI   I+QDPYFR+ RD+APR+G+ K A +   F P LQG   KMSASDPNSAIY+TD+ 
Sbjct: 290 LIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTP 349
Query: 187 XXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGM 246
                    YAFSGG+++ E HR  GA+L VD+ V+YL  F++DDAELE +K +Y  G +
Sbjct: 350 AQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKL 409
Query: 247 LTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           LTGEVK  L  +L  L++ H   R  V   M+++F   + L
Sbjct: 410 LTGEVKATLIGILQGLIKEHAERRDKVDTTMIESFTVKKEL 450

>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Tryptophanyl-Trna Synthetase In Complex With Trpamp Length = 392

Iteration: 1
 Score =  184 bits (468), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 105/281 (37%), Positives = 159/281 (56%), Gaps = 15/281 (5%)
Query: 3   TKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 61
           TK+LQ+ F V L IQ+TDDEK ++K NL+ ++++R A +N  DIIA GFD  KTFIF + 
Sbjct: 97  TKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNS 156
Query: 62  DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGK 121
           ++     Y+  + +AK + ++    +FGFT +  IG + FP +Q                
Sbjct: 157 EFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFF---------- 204
Query: 122 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 181
           +  RCLIP AIDQDPY+R+ RD A  +GY+K A + S F P+L   +GKMSAS P +AIY
Sbjct: 205 ERKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIY 264
Query: 182 VTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKE 240
           +TDS          +  +GG+ +++  R+ G   E  +  K+L  FF EDD +L+     
Sbjct: 265 LTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYA 324
Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 281
              G +  GE K+ L   + E ++ HQ  R    +++V+ F
Sbjct: 325 CKNGELTCGECKRYLISKIQEFLKEHQRRRKKA-EKLVEKF 364

>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba Histolytica Length = 386

Iteration: 1
 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 147/282 (52%), Gaps = 4/282 (1%)
Query: 2   FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 61
           F +YLQDAF + ++IQ+ DD K + +  ++ E+ +++ +  K I+A GF+  KTFI++D+
Sbjct: 105 FARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDY 164
Query: 62  DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGK 121
            Y G   Y+ +  V K   YN V   F F   D+IGK++ P +                 
Sbjct: 165 QYFG-KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP 223
Query: 122 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 181
              RCL+  +I    +  +   +A  + + +P ++     P L G T     SD NS I 
Sbjct: 224 --ARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNS-IL 280
Query: 182 VTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 241
           ++D+           AFSGG+ + E H+KLG   ++D+  + L+ F  D+A+++ ++++Y
Sbjct: 281 LSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKY 340
Query: 242 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMA 283
             G +L+GE+K+ ++  + + +  +   +  +T   + A+++
Sbjct: 341 SKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYIS 382

>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Length = 372

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 124/272 (45%), Gaps = 23/272 (8%)
Query: 5   YLQ-DAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFD 62
           YLQ + FKV   + + D E    + +  EE+ R+A  E   ++IA G D   T  +  F 
Sbjct: 96  YLQKNGFKV--FVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFY--FQ 151
Query: 63  YVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGK 121
              G  Y  ++++ +  VT  ++  I+G   E    K+     QA             G 
Sbjct: 152 TNRGTPYFRLIQLFSGKVTAAEMEAIYG---ELTPAKMMASLTQAADILHVQLDEYG-GY 207
Query: 122 DHLRCLIPCAIDQDPYFRMTRDVAPRIG----YHKPALIESSFFPALQGETGKMSASDPN 177
            H+  ++P   DQDP+ R+TRD+A R+       +PA       P L G   KMS+S P+
Sbjct: 208 RHV--VVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGR--KMSSSRPD 263
Query: 178 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFF--LEDDAELE 235
           S I++TD            A +GG+ + E  R+LG   EV   V ++  +  + DD E++
Sbjct: 264 STIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEV-CSVYHMDLYHLMPDDGEVK 321
Query: 236 HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 267
           HI      G +L GE KQ   + L   +  HQ
Sbjct: 322 HIYTSCRLGKILCGECKQIAWEKLERFLAEHQ 353

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	292
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	1e-120
1r6u_A	437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	1e-120
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	1e-118
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	1e-117
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	1e-114
3tze_A	406	Tryptophanyl-tRNA synthetase; structural genomics,	1e-110
3i05_A	395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	1e-108
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	1e-107
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	3e-94
2j5b_A	348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	1e-74
3vgj_A	373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	3e-25
2dlc_X	394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	3e-24
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	2e-22
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	4e-20
2cyc_A	375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	2e-19
2cya_A	364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	2e-17
1yi8_B	351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	8e-15
2g36_A	340	Tryptophanyl-tRNA synthetase; TM0492, structural g	2e-13
1n3l_A	372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	4e-13
2cyb_A	323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	1e-11
2el7_A	337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	5e-11
2zp1_A	314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	2e-09
3tzl_A	322	Tryptophanyl-tRNA synthetase; structural genomics,	1e-07
3n9i_A	346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	2e-06
3prh_A	388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	2e-06
3sz3_A	341	Tryptophanyl-tRNA synthetase; structural genomics,	2e-06
1i6k_A	328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	3e-06
2yy5_A	348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	6e-06

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477

 Score =  353 bits (906), Expect = e-120
 Identities = 181/293 (61%), Positives = 229/293 (78%), Gaps = 2/293 (0%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct: 178 IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 237

Query: 61  FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
            DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F
Sbjct: 238 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 297

Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct: 298 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 357

Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct: 358 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 417

Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 291
           K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L    
Sbjct: 418 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAAAL 470

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437

 Score =  351 bits (903), Expect = e-120
 Identities = 182/293 (62%), Positives = 230/293 (78%), Gaps = 2/293 (0%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct: 131 IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 190

Query: 61  FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
            DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F
Sbjct: 191 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 250

Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct: 251 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 310

Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct: 311 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 370

Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 291
           K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L   F
Sbjct: 371 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 423

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392

 Score =  343 bits (881), Expect = e-118
 Identities = 109/289 (37%), Positives = 167/289 (57%), Gaps = 15/289 (5%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFS 59
             TK+LQ+ F V L IQ+TDDEK ++K NL+ ++++R A +N  DIIA GFD  KTFIF 
Sbjct: 95  FATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQ 154

Query: 60  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 119
           + ++     Y+  + +AK + ++    +FGFT +  IG + FP +Q  P+F         
Sbjct: 155 NSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFFERKR---- 208

Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
                 CLIP AIDQDPY+R+ RD A  +GY+K A + S F P+L   +GKMSAS P +A
Sbjct: 209 ------CLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETA 262

Query: 180 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIK 238
           IY+TDS + ++ K+ K+  +GG+ +++  R+ G   E  +  K+L  FF EDD +L+   
Sbjct: 263 IYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERY 322

Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
                G +  GE K+ L   + E ++ HQ  R    +++V+ F     L
Sbjct: 323 YACKNGELTCGECKRYLISKIQEFLKEHQ-RRRKKAEKLVEKFKYTGKL 370

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Length = 432

 Score =  343 bits (882), Expect = e-117
 Identities = 153/288 (53%), Positives = 203/288 (70%), Gaps = 1/288 (0%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFS 59
           +FTK+LQ+ F VPLVI+LTDDEK ++K+ L++ + +  ARENAKDIIA GFD   TFIFS
Sbjct: 125 VFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFS 184

Query: 60  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 119
           D  Y+GGAFY+ +V+V++ +T +    +FGF   D IGK  F  +Q   +FPSSFP++  
Sbjct: 185 DLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLG 244

Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
             D   CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD  +A
Sbjct: 245 LPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTA 304

Query: 180 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239
           I++TD+ K I+ KINKYAFSGGQ S +LHR+LG N +VD+  +YLSFF +DD  L+    
Sbjct: 305 IFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYD 364

Query: 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           +Y +G +L+GE+K+   + L E V+  Q  RA V +E +D FM    L
Sbjct: 365 KYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393

 Score =  334 bits (859), Expect = e-114
 Identities = 151/286 (52%), Positives = 207/286 (72%), Gaps = 2/286 (0%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFS 59
           +FTKYLQD FKVPLVIQLTDDEK ++K+ L++EE+   A EN KDIIACGFD   TFIF+
Sbjct: 97  LFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFT 156

Query: 60  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 119
           + +Y+    Y +++++ K ++ +++  IFGF    ++GK +FP VQA P+F SSFPH+F 
Sbjct: 157 NLEYIA-ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFG 215

Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
           G+  + CL+P AIDQDPYFRM RDVAPR+GY KP+ I S F P+LQG   KMSAS  NS+
Sbjct: 216 GRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSS 275

Query: 180 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239
           I+V D+ ++I+NKI KYAFSGGQ + E  R+LGANL+VD+  +YL F +EDD +LE I K
Sbjct: 276 IFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGK 335

Query: 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 285
           +Y +G ML+GE+K  L + L +L + HQ  R A+ D+++  F    
Sbjct: 336 KYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKS 381

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Length = 406

 Score =  323 bits (829), Expect = e-110
 Identities = 123/287 (42%), Positives = 187/287 (65%), Gaps = 4/287 (1%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +  KY+QDAFK+ LVIQ+TDDEK +WK++ +E++    REN KDI+  GFD   T+IFS+
Sbjct: 124 LLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSN 183

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
            +     F +N++K++K +  N+ + +FGF    +IG+V FP  +  P F SSF  +  G
Sbjct: 184 VEA-SHHFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKG 242

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
                CL+P A+DQDP+FR+ RD A  +G  KP+ I  S  P L+G   KMSASDPNS+I
Sbjct: 243 A---MCLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSI 299

Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
           Y+ D+   I+ KI  YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE  +  
Sbjct: 300 YLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSG 359

Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           Y  G + + E+K++   V+ E V R+Q +R  VTD+ + AF+ +   
Sbjct: 360 YIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395

 Score =  318 bits (817), Expect = e-108
 Identities = 153/288 (53%), Positives = 206/288 (71%), Gaps = 3/288 (1%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           MFTK+LQD+F+VPLVIQ+TDDEK  ++N+ +E+ + +  EN KDIIA GFD   TFIF D
Sbjct: 101 MFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRD 160

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS- 119
           FDY+G   Y+ + K+ +  T ++V G FGF  ED+ G+  FP +QA PSF ++FPH+F  
Sbjct: 161 FDYMG-CMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPP 219

Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
              ++ CLIP AIDQDPYFR+TRD+APR+GY KPA+I S FFP L G  GKMS+S    A
Sbjct: 220 SMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGT-A 278

Query: 180 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239
           + +TD+ K +K+KINK+AFSGG  + + H  LGAN+EVD+P+++LSFFLEDD EL  +KK
Sbjct: 279 VLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKK 338

Query: 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           EY  G ++TGEVK+ L   +T + + HQ  R  VTDE V  F + R +
Sbjct: 339 EYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIM 386

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Length = 386

 Score =  316 bits (810), Expect = e-107
 Identities = 84/287 (29%), Positives = 160/287 (55%), Gaps = 4/287 (1%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
            F +YLQDAF + ++IQ+ DD K + +  ++ E+ +++ +  K I+A GF+  KTFI++D
Sbjct: 104 EFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTD 163

Query: 61  FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
           + Y G   Y+ +  V K   YN V   F F   D+IGK++ P +     F  S+ H FS 
Sbjct: 164 YQYFG-KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSS 222

Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
               RCL+  +I    +  +   +A  + + +P ++     P L G   K      +++I
Sbjct: 223 P--ARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSI 279

Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
            ++D+AK ++ KINK AFSGG+ + E H+KLG   ++D+  + L+ F  D+A+++ ++++
Sbjct: 280 LLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEK 339

Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           Y  G +L+GE+K+ ++  + + +  +   +  +T   + A+++    
Sbjct: 340 YSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTKF 386

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451

 Score =  284 bits (728), Expect = 3e-94
 Identities = 137/337 (40%), Positives = 187/337 (55%), Gaps = 50/337 (14%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAKDIIACGFDVTKTFIFS 59
           +FTKYLQDAFK  +VIQ+TDDEK +  ++LS  E     REN KDIIACGFD  KTFIF 
Sbjct: 114 IFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFI 173

Query: 60  DFDYVG-GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
           +  Y+     Y+    V + +  +++   FGF+ + ++G  +FPP Q +P + + F  L 
Sbjct: 174 NSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLP 233

Query: 119 SGKDH------------------------------------------------LRCLIPC 130
             +                                                    CLI  
Sbjct: 234 FTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIAS 293

Query: 131 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 190
            I+QDPYFR+ RD+APR+G+ K A +   F P LQG   KMSASDPNSAIY+TD+   IK
Sbjct: 294 GIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIK 353

Query: 191 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGE 250
           NKIN+YAFSGG+++ E HR  GA+L VD+ V+YL  F++DDAELE +K +Y  G +LTGE
Sbjct: 354 NKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGE 413

Query: 251 VKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           VK  L  +L  L++ H   R  V   M+++F   + L
Sbjct: 414 VKATLIGILQGLIKEHAERRDKVDTTMIESFTVKKEL 450

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Length = 348

 Score =  231 bits (591), Expect = 1e-74
 Identities = 51/295 (17%), Positives = 107/295 (36%), Gaps = 25/295 (8%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCM--WKNLSVEESQRLARENAKDIIACGFDVTKTFIF 58
           +            ++I + D    M    N  + + + L R   +   ACG ++  T   
Sbjct: 62  VMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFI 121

Query: 59  --SDFDYVGGAFYKNMVKVAKCVTYNKV---VGIFGFTGEDHI--GKVSFPPVQAVPSFP 111
             S+F     ++ + M+ +A+  T ++V     I G    D +   ++ +P +QA   F 
Sbjct: 122 WASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAADVFE 181

Query: 112 SSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKM 171
                          +    IDQ     +  + A   G   P  +      +L G   KM
Sbjct: 182 LVPEG--------IDICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKM 233

Query: 172 SASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDD 231
           S SDP  AI++ D+ + +  KI++   +      +          +      L+   +  
Sbjct: 234 SKSDPQGAIFMDDTEQEVSEKISRAYCTDETF--DNPIFEYIKYLLLRWFGTLNLCGKIY 291

Query: 232 AELEHIKKEYGAGGMLTGEVKQRLAKVLTELV----ERHQVARAAVTDEMVDAFM 282
            ++E I++++    M   E+K  +A  +  ++    E  +    +     V ++ 
Sbjct: 292 TDIESIQEDF--SSMNKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQ 344

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Length = 373

 Score =  102 bits (256), Expect = 3e-25
 Identities = 47/263 (17%), Positives = 99/263 (37%), Gaps = 32/263 (12%)

Query: 18  LTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMV-K 74
             +++  M  +L  ++ +++     +   +CG ++        S+        Y ++V  
Sbjct: 101 HLNNK--MSGDL--KKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLD 156

Query: 75  VAKCVTYNKVVGIFGFTG-----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LI 128
           +++    N++       G     E++  ++ +P +Q    F             L   + 
Sbjct: 157 ISRSFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCADIF------------FLNVDIC 204

Query: 129 PCAIDQDPYFRMTRDVAPRIGYHKPALIES-SFFPALQGETGKMSASDPNSAIYVTDSAK 187
              IDQ     + R+        K  +I S    P L     KMS SD NSAI++ DS  
Sbjct: 205 QLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSES 264

Query: 188 AIKNKINK-YAFSGGQE-----SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 241
            +  KI K Y      E     +        +  E ++  K  +   +    L+ ++ +Y
Sbjct: 265 DVNRKIKKAYCPPNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDY 324

Query: 242 GAGGMLTGEVKQRLAKVLTELVE 264
             G +   ++K  +A  + +L++
Sbjct: 325 VNGFIHPLDLKDNVAMYINKLLQ 347

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394

 Score = 99.9 bits (249), Expect = 3e-24
 Identities = 51/265 (19%), Positives = 93/265 (35%), Gaps = 38/265 (14%)

Query: 47  ACGFDVTKT-FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF----GFTGEDHIGKVSF 101
           +    + K  F+      +   +  ++ +++  V+ N                 +  + +
Sbjct: 111 SINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANPLLSGLIY 170

Query: 102 PPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPYFRMTRDVAPRIGYHKPALIESSF 160
           P +QA+                L        +DQ   F +  +  P +GY K A + +  
Sbjct: 171 PLMQALDEQ------------FLDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPM 218

Query: 161 FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ-------ESVELHRKLGA 213
            P L    GKMSASDPNS I + +  K +K KIN    S G          V+    +  
Sbjct: 219 VPGLAQG-GKMSASDPNSKIDLLEEPKQVKKKINSAFCSPGNVEENGLLSFVQYV--IAP 275

Query: 214 NLEVDIPVKYLSFFLEDD---------AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 264
             E+     +  FF++              E +K  +    +   ++K  +A  + EL+E
Sbjct: 276 IQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLE 335

Query: 265 RHQVARAAVTDEMVDAFMAVRPLPN 289
             +   A    E  +A     P+  
Sbjct: 336 PIRQEFAN-NKEFQEASEKGYPVAT 359

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690

 Score = 96.1 bits (239), Expect = 2e-22
 Identities = 47/265 (17%), Positives = 95/265 (35%), Gaps = 40/265 (15%)

Query: 25  MWKNLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDFDYVGGAFY-KNMVKVAKCVTY 81
           +   L  E+ + + R   +   A G D+ K  F++ S+        Y + ++ + +  T 
Sbjct: 90  VGGEL--EKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTI 147

Query: 82  NKV---VGIFGFTGEDH-IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDP 136
            ++     I G T       +V +P +Q    F             L+  +    +DQ  
Sbjct: 148 ARIKKCCTIMGKTEGTLTAAQVLYPLMQCCDIF------------FLKADICQLGLDQRK 195

Query: 137 YFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 195
              + R+    IG   KP ++       L+    KMS SDP+SAI++ D+ + +  KI +
Sbjct: 196 VNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ 255

Query: 196 YAF-------SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL---------EHIKK 239
            A+       +                 V    + + +     A           E +++
Sbjct: 256 -AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQ 314

Query: 240 EYGAGGMLTGEVKQRLAKVLTELVE 264
            + +  +    +K  L   +  L+E
Sbjct: 315 AFVSDEVSEDALKSCLIDEVNALLE 339

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690

 Score = 89.1 bits (221), Expect = 4e-20
 Identities = 31/242 (12%), Positives = 73/242 (30%), Gaps = 26/242 (10%)

Query: 32  EESQRLARENAKDIIACGFDVTKTFIF-SDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFG 89
           ++     + N   + A G   +   +  ++        +   V  +A+    + V  ++G
Sbjct: 438 KDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG 497

Query: 90  FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 149
               +  G+V    ++           L     H    +             R+      
Sbjct: 498 GEVRN-AGQVIAALMRVAT-------ALMLSVSH----VISTSLDGHINAFAREYTKERI 545

Query: 150 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQES----V 205
                       PAL       +    +  +Y+ D+   I+ KI K A+S   E     +
Sbjct: 546 --DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNEEANPVI 602

Query: 206 ELHRKL---GANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 262
            + + L      L ++                E +  + G+G +   ++K  + ++L + 
Sbjct: 603 SVAQHLLAQHGALSIERGEANGGNV--SYNTPEALVADCGSGALHPADLKAAVLQLLLDR 660

Query: 263 VE 264
             
Sbjct: 661 SA 662

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Length = 375

 Score = 86.4 bits (214), Expect = 2e-19
 Identities = 54/290 (18%), Positives = 101/290 (34%), Gaps = 59/290 (20%)

Query: 18  LTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMVKV 75
           + D      + +     +       K I   G D  K      S+     G +++ ++ +
Sbjct: 79  INDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEI-LEKGDYWQTVIDI 137

Query: 76  AKCVTYNKVVGIF-----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIP 129
           +K VT ++V+                 K+ +P +Q    F            +    +  
Sbjct: 138 SKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIF------------YQGVTIAH 185

Query: 130 CAIDQDPYFRMTRDVAPRIGYH---------KPALIESSFFPALQGE------------- 167
             +DQ     +  +VA ++ YH         KP  +       LQ               
Sbjct: 186 AGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKE 245

Query: 168 ---TGKMSASDPNSAIYVTDSAKAIKNKINKYAF--------SGGQESVE--LHRKLGAN 214
                KMS S P SA+++ DS + I+ K+ K AF        +   + VE  + R+    
Sbjct: 246 IKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAREVRYNPVLDWVEYIIFREEPTE 304

Query: 215 LEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 264
             V  P K+           E +K+++  G +   ++K  +A+ L  L+E
Sbjct: 305 FTVHRPAKFGG--DVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLE 352

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364

 Score = 80.2 bits (198), Expect = 2e-17
 Identities = 63/296 (21%), Positives = 107/296 (36%), Gaps = 65/296 (21%)

Query: 2   FTKYLQDAFKVPL-VIQLTDDE-KCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 59
           +  Y+ D     + +I+      + + +   V   +                V    + S
Sbjct: 76  WHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERVR-------------FVDAEELAS 122

Query: 60  DFDYVGGAFYKNMVKVAKCVTYNKV------VGIFGFTGEDHIGKVSFPPVQAVPSFPSS 113
           D DY     +  +++VAK  +  +V      +G      E    K+ +P +Q    F   
Sbjct: 123 DKDY-----WGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVSDIF--- 174

Query: 114 FPHLFSGKDHLRCLIPCA-IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG------ 166
                    ++   I    +DQ     + RDVA ++G  KP  I +    +LQG      
Sbjct: 175 ---------YMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEA 225

Query: 167 ---------ETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ-------ESVELH-- 208
                       KMS S P +A++V DS   I+ KI K      Q       E       
Sbjct: 226 SQGEIDDVLAEVKMSKSKPETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILF 285

Query: 209 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 264
            + G  L VD P KY      +    E ++++Y  G +   ++K  +A+ L E+V 
Sbjct: 286 ARDGFTLRVDRPAKYGGP--VEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVR 339

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Length = 351

 Score = 72.6 bits (179), Expect = 8e-15
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 16/141 (11%)

Query: 133 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 184
           DQ P    TR++  R            +  L      P L G   KMS S  N AI + D
Sbjct: 171 DQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGD 228

Query: 185 SAKAIKNKINK-YAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 243
           SA  +  K+   Y   G   + +  R  G  +       +L  F  D A ++ +K +Y A
Sbjct: 229 SADEVARKVMGMYTDPGHLRASDPGRVEGNPV-----FTFLDAFDPDPARVQALKDQYRA 283

Query: 244 GGMLTGEVKQRLAKVLTELVE 264
           GG+   +VK+ L  VL  ++ 
Sbjct: 284 GGLGDVKVKKHLIDVLNGVLA 304

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Length = 340

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 15/140 (10%)

Query: 133 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 184
           DQ  +  +TR++A R  Y         +  L      P   G   KMS S  N  I +  
Sbjct: 162 DQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGR--KMSKSYGN-IINLEI 218

Query: 185 SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAG 244
           S K ++  I +   +   +   + R    N E     KY   F   + E + + +     
Sbjct: 219 SEKELEQTILR-MMT---DPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTA 274

Query: 245 GMLTGEVKQRLAKVLTELVE 264
            +   + K+ L K +   + 
Sbjct: 275 SIGCVDCKKLLLKNMKRKLA 294

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372

 Score = 67.9 bits (166), Expect = 4e-13
 Identities = 43/250 (17%), Positives = 86/250 (34%), Gaps = 31/250 (12%)

Query: 31  VEESQRLARENAKDII-ACGFDVTKTFIFSDFDYVGGAFY-KNMVKVAKCVTYNKVVGIF 88
           +E          K ++ + G  + K       DY     Y  ++ +++  VT +      
Sbjct: 90  LELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAG 149

Query: 89  GF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPYFRMTRD 143
                      +  + +P +QA+               +L+       IDQ   F     
Sbjct: 150 AEVVKQVEHPLLSGLLYPGLQALDEE------------YLKVDAQFGGIDQRKIFTFAEK 197

Query: 144 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 203
             P +GY K   + +   P L G   KMS+S+  S I + D  + +K K+ K     G  
Sbjct: 198 YLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNV 255

Query: 204 S-------VELH-RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRL 255
                   ++     L +   +    K+             ++K++ A  +  G++K  +
Sbjct: 256 ENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTA--YVDLEKDFAAEVVHPGDLKNSV 313

Query: 256 AKVLTELVER 265
              L +L++ 
Sbjct: 314 EVALNKLLDP 323

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 37/250 (14%)

Query: 32  EESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFY-KNMVKVAKCVTYNKVVGIFG 89
           EE   +A  N K  IA G D ++  F+    +Y     Y  +++K+A+  T N+      
Sbjct: 84  EEIAEVADYNKKVFIALGLDESRAKFVLGS-EYQLSRDYVLDVLKMARITTLNRARRSMD 142

Query: 90  FTG----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPYFRMTRDV 144
                  +  + ++ +P +QA+               HL   +    IDQ     + R+ 
Sbjct: 143 EVSRRKEDPMVSQMIYPLMQALDIA------------HLGVDLAVGGIDQRKIHMLAREN 190

Query: 145 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ-- 202
            PR+GY  P  + +     L G   KMS+S   + I V D  + ++ KI K     G   
Sbjct: 191 LPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPPEEVERKIRKAYCPAGVVE 247

Query: 203 --------ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQR 254
                   +   L R     + V+   K+      + A  E + +++ +G +   ++K  
Sbjct: 248 ENPILDIAKYHILPRF--GKIVVERDAKFGGDV--EYASFEELAEDFKSGQLHPLDLKIA 303

Query: 255 LAKVLTELVE 264
           +AK L  L+E
Sbjct: 304 VAKYLNMLLE 313

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Length = 337

 Score = 61.4 bits (150), Expect = 5e-11
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 16/141 (11%)

Query: 133 DQDPYFRMTRDVAPRIGYH------KP-ALIESSF--FPALQGETGKMSASDPNSAIYVT 183
           DQ  +  +TR++A R  +       +P AL+       P + G   KMS S  N  I + 
Sbjct: 150 DQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLL 207

Query: 184 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 243
           +  ++I  KI         +   +      + E  I   YLS+F      +E +K+EY  
Sbjct: 208 EPEESIWQKIQH-LPD---DPQRIRLSDPGDPERTILFTYLSYF-APKDLVEALKEEYRK 262

Query: 244 GGMLTGEVKQRLAKVLTELVE 264
            G+ T  VK+ L   L E + 
Sbjct: 263 AGVGTYVVKRILFDHLMEALR 283

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Length = 314

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 34/244 (13%)

Query: 32  EESQRLARENAKDIIACGFDVTKTFI-FSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF 90
           +E +++   N K   A G      ++  S+F      +  N+ ++A   T  +       
Sbjct: 80  DEIRKIGDYNKKVFEAMGLK--AKYVYGSEFQL-DKDYTLNVYRLALKTTLKRARRSMEL 136

Query: 91  TG----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPYFRMTRDVA 145
                    + +V +P +Q   S             +L   +    ++Q     + R++ 
Sbjct: 137 IAREDENPKVAEVIYPIMQVNTSH------------YLGVDVAVGGMEQRKIHMLARELL 184

Query: 146 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK-YAFSGGQES 204
           P+    K   I +     L GE GKMS+S  N  I V DS + I+ KI K Y  +G  E 
Sbjct: 185 PK----KVVCIHNPVLTGLDGE-GKMSSSKGN-FIAVDDSPEEIRAKIKKAYCPAGVVEG 238

Query: 205 --VELHRK--LGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 260
             +    K  L   L +  P K+           E ++  +    +    +K  +A+ L 
Sbjct: 239 NPIMEIAKYFLEYPLTIKRPEKFGGD--LTVNSYEELESLFKNKELHPMYLKNAVAEELI 296

Query: 261 ELVE 264
           +++E
Sbjct: 297 KILE 300

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} PDB: 3m5w_A* Length = 322

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 19/141 (13%)

Query: 133 DQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPNSAIYVT 183
           DQ  +  + RD+A ++          P A +  E +      G   KMS S  N  I + 
Sbjct: 148 DQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGA--KMSKSYQN-TIDIF 204

Query: 184 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 243
            S K +K +I+    +      +       N+      K    FL D++  + ++  Y  
Sbjct: 205 SSEKTLKKQISS-IVTDSTALEDPKDHENCNI-----FKIAKLFL-DESGQKELQIRYEK 257

Query: 244 GGMLTGEVKQRLAKVLTELVE 264
           GG   G  K  L +++    +
Sbjct: 258 GGEGYGHFKIYLNELVNAYFK 278

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 15/107 (14%)

Query: 164 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEV 217
           LQ  T KMS SD N  + I + +  K++  KI +    +        ++ +K G  NL +
Sbjct: 201 LQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNL-L 259

Query: 218 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 264
           DI    LS        +  ++ ++   G + G +K  +A  ++ ++ 
Sbjct: 260 DI----LSGV--TGQSIPELEAQF--TGQMYGHLKGAVADAVSGMLS 298

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Length = 388

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 15/106 (14%)

Query: 164 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 218
           L     KMS SDPN  + I + D  K ++ KI   A   S G    +   K G  NL + 
Sbjct: 220 LNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVKFDKENKPGVSNL-LT 277

Query: 219 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 264
           I     S     +  +E ++ +Y   G   GE K  LA+V+   ++
Sbjct: 278 I----YSIL--GNTTIEELEAKY--EGKGYGEFKGDLAEVVVNALK 315

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Length = 341

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 30/158 (18%)

Query: 127 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFP--------------ALQGETGKMS 172
            +P   DQ  +  + RD+A R  ++     E   F               +LQ  T KMS
Sbjct: 146 QVPVGSDQKQHLELARDIATR--FNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMS 203

Query: 173 ASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEVDIPVKYLSF 226
            SD N  + I + +  K+I  KINK    A +  + + ++  K G  NL + +     S 
Sbjct: 204 KSDDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVENKAGIANL-MGL----YSA 258

Query: 227 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 264
                     I+ +Y AG  + G  K+ + + +  ++E
Sbjct: 259 A--TGKTFAEIEAQY-AGVEMYGPFKKDVGEAVVAMLE 293

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Length = 328

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 15/106 (14%)

Query: 164 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 218
           L   T KMS SDPN  + I + D AK I+ KI   A   S G    +   K G  NL ++
Sbjct: 186 LVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIRYDKEAKPGISNL-LN 243

Query: 219 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 264
           I   Y +        +E ++++Y   G   G  K  LA+V+ E + 
Sbjct: 244 I---YSTL---SGQSIEELERQY--EGKGYGVFKADLAQVVIETLR 281

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Length = 348

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 20/113 (17%)

Query: 164 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 218
           L   T KMS S  N    IY+ D  + +  KI + A   S  +       + G  N+ + 
Sbjct: 196 LFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQ-ATTDSFNKIRFASKTQPGVTNM-LT 253

Query: 219 IPVKYLSFF-------LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 264
           I    L             +     ++  +        ++K  L +    L+ 
Sbjct: 254 I----LKALLKEPVNQSLTNQLGNDLEAYF--STKSYLDLKNALTEATVNLLV 300

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	292
3tze_A	406	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	100.0
3i05_A	395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	100.0
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	100.0
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	100.0
1r6u_A	437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	100.0
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	100.0
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	100.0
3sz3_A	341	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
3a04_A	372	Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR	100.0
3prh_A	388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	100.0
3n9i_A	346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	100.0
3tzl_A	322	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
2yy5_A	348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	100.0
1i6k_A	328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	100.0
2g36_A	340	Tryptophanyl-tRNA synthetase; TM0492, structural g	100.0
1yi8_B	351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	100.0
2el7_A	337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	100.0
3vgj_A	373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	100.0
2cya_A	364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	100.0
2cyc_A	375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	100.0
2j5b_A	348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	100.0
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
2cyb_A	323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	100.0
2zp1_A	314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	100.0
1n3l_A	372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	100.0
2dlc_X	394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	100.0
2yxn_A	322	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	100.0
1h3f_A	432	Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy	100.0
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
2jan_A	432	Tyrosyl-tRNA synthetase; protein biosynthesis, ami	100.0
2pid_A	356	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
2ts1_A	419	Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30	100.0
1y42_X	392	Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR	100.0
1jil_A	420	Tyrrs, tyrosyl-tRNA synthetase; truncation, based	100.0
2cfo_A	492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	97.33
1j09_A	468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	97.3
1nzj_A	298	Hypothetical protein YADB; Zn cluster, glutamyl T-	97.24
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	97.19
3afh_A	488	Glutamyl-tRNA synthetase 2; protein-substrate comp	97.01
2ja2_A	498	Glutamyl-tRNA synthetase; non-discriminating gluta	96.83
3fnr_A	464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	92.78
2csx_A	497	Methionyl-tRNA synthetase; ligase, riken structura	91.96
2o5r_A	481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	91.31
2d5b_A	500	Methionyl-tRNA synthetase; rossmann fold, class 1A	91.28
3kfl_A	564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	89.62
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	87.75
2x1l_A	524	Methionyl-tRNA synthetase; nucleotide-binding, pro	87.44
4dlp_A	536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	86.74
1ffy_A	917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	86.67
3u1f_A	542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	85.09
1ile_A	821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	85.07
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	84.77
3c8z_A	414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	84.7
1irx_A	523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	83.35
4g6z_A	490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	83.15
3h99_A	560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	83.07
1wz2_A	967	Leucyl-tRNA synthetase; ligase, riken structural g	81.76
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	80.72

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.3e-74  Score=551.43  Aligned_cols=282  Identities=44%  Similarity=0.793  Sum_probs=262.0

Q ss_pred             chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhheee
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY   81 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~   81 (292)
                      +++|||+++||+++|+|||+||+++++.+++++++|+++++++|+|||+||+|++||.||+|++ +++..+++|+|++|+
T Consensus       125 ~~~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qs~~~~-~~~~~~~~L~r~~t~  203 (406)
T 3tze_A          125 LCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEASH-HFEENILKISKTINL  203 (406)
T ss_dssp             HHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGG-GGHHHHHHHHHTCBH
T ss_pred             HHHHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccHhHH-HHHHHHHHHHhhCCH
Confidence            6899999889999999999999987669999999999999999999999999999999999986 889999999999999


Q ss_pred             cceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcccc
Q 022791           82 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFF  161 (292)
Q Consensus        82 ~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~l  161 (292)
                      +++++++|+.++.++|+|+||+|||||+++++||.|+.+++   |+||||.||+||+++|||+|+|||+++|.++++++|
T Consensus       204 ~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a---~lvpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l  280 (406)
T 3tze_A          204 NEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAM---CLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLL  280 (406)
T ss_dssp             HHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCE---EEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCC
T ss_pred             HHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCC---eEEeeccchHHHHHHHHHHHHHcCCCCceeeccCcc
Confidence            99999988888899999999999999999999999998877   699999999999999999999999999999999999


Q ss_pred             ccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHHhh
Q 022791          162 PALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY  241 (292)
Q Consensus       162 pgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~~y  241 (292)
                      |||+|+++|||||+|+|+|+|+|+|++|++|||+||+|||+.+++++++.||||++|++++|+++|+.+++++++|+++|
T Consensus       281 ~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~~~~eei~~~y  360 (406)
T 3tze_A          281 PDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGY  360 (406)
T ss_dssp             CCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             cCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCcchHHHHHHHH
Confidence            99999767999999888999999999999999999999999998888889999999999999999976678999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791          242 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  287 (292)
Q Consensus       242 ~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~  287 (292)
                      ++|+++|++||+.||+.|+++|+|||+||++++++.|++|+..+++
T Consensus       361 ~~G~l~~g~lK~~Lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~  406 (406)
T 3tze_A          361 IKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF  406 (406)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCGGGC
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcCCC
Confidence            9999999999999999999999999999999999999999987653

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}

Probab=100.00  E-value=6.2e-74  Score=543.93  Aligned_cols=282  Identities=30%  Similarity=0.629  Sum_probs=267.4

Q ss_pred             chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhheee
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY   81 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~   81 (292)
                      +++|||+++||+++|+|+|+||++.++.+++++++|+++++++|+|||+||+|++||.||+|++ .++..+++|+|++|+
T Consensus       105 ~~~~lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~-~~~~~~~~l~r~~t~  183 (386)
T 3hzr_A          105 FARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG-KMYRTISLVEKATAY  183 (386)
T ss_dssp             HHHHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH-HHHHHHHHHHHHCBH
T ss_pred             HHHHHHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH-HHHHHHHHHHhhccH
Confidence            6899999889999999999999998669999999999999999999999999999999999986 888999999999999


Q ss_pred             cceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcccc
Q 022791           82 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFF  161 (292)
Q Consensus        82 ~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~l  161 (292)
                      +++++++|+.++.++|+|+||+|||||+++++|||||.++  ++|+||||.||+||+++|||+|+|||+++|.++++++|
T Consensus       184 ~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~--~a~~VpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l  261 (386)
T 3hzr_A          184 NVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMV  261 (386)
T ss_dssp             HHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSC--CEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCC
T ss_pred             HHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCC--CccccccccchHHHHHHHHHHHHHcCCCCceEeecCee
Confidence            9999999888889999999999999999999999999986  22799999999999999999999999999988899999


Q ss_pred             ccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHHhh
Q 022791          162 PALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY  241 (292)
Q Consensus       162 pgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~~y  241 (292)
                      |||+|+ +|||||+++|+|+|+|+|++|++|||++||||++.|.+++++.+|+|+++++++|+.+|+.+++++++++++|
T Consensus       262 ~gLdG~-~KMSKSd~~~~I~L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~~~~~eei~~~~  340 (386)
T 3hzr_A          262 PLLSGV-TKFDIPSDHNSILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKY  340 (386)
T ss_dssp             CCTTCT-TCCCCCCTTTSCBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             eCCCCC-CccCcCCCCCeeecCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHcCChhhHHHHHHHH
Confidence            999997 4999999889999999999999999998999999999999999999999999999999976678999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791          242 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  287 (292)
Q Consensus       242 ~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~  287 (292)
                      ++|+++|++||+.||++|+++|+|||+||++++++.|++++..+++
T Consensus       341 ~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~~~~~~~~~  386 (386)
T 3hzr_A          341 SKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTKF  386 (386)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHCC
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence            9999999999999999999999999999999999999999987654

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0

Probab=100.00  E-value=1.5e-73  Score=543.11  Aligned_cols=284  Identities=54%  Similarity=0.918  Sum_probs=229.3

Q ss_pred             chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhheee
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY   81 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~   81 (292)
                      +++|||+++|++++|+|||+|++++++.+++++++|+++++++|+|||+||+|++||.||+|.+ .|+..+++|+|++|+
T Consensus       102 ~~~~lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~-~~~~~v~~l~r~~t~  180 (395)
T 3i05_A          102 FTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYMG-CMYRTVAKIERAFTA  180 (395)
T ss_dssp             HHHHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHTT-TSHHHHHHHHHHSBH
T ss_pred             HHHHHHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHHH-HHHHHHHHHHhhCCH
Confidence            6899999889999999999988887669999999999999999999999999999999999986 788999999999999


Q ss_pred             cceeeccccCCCCccccccCCccccCCCCCCCCCccccCC-CcccccccccccCCCccccccccCcccCCCCccchhccc
Q 022791           82 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF  160 (292)
Q Consensus        82 ~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~-ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~  160 (292)
                      +++++++|+.++.++|+|+||+|||||++.++||||++++ .+.+|+||||.||+||+++|||+|+|||+++|.++++++
T Consensus       181 ~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~  260 (395)
T 3i05_A          181 SQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKF  260 (395)
T ss_dssp             HHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEECC
T ss_pred             HHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHHHHHHcCCCCceeecccc
Confidence            9999999888889999999999999999999999999998 223479999999999999999999999999999999999


Q ss_pred             cccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHHh
Q 022791          161 FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE  240 (292)
Q Consensus       161 lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~~  240 (292)
                      ||||+|+++||||| ++|+|+|+|+|++|++|||++|+||++.+.++++++||||++|++|+|+++|+.+++++++++++
T Consensus       261 l~gLdG~~~KMSKS-~~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~~~~eei~~~  339 (395)
T 3i05_A          261 FPGLSGPKGKMSSS-SGTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKE  339 (395)
T ss_dssp             CCCC--------------CCBTTCCHHHHHHHHC----------------------CCHHHHHHHHHCCCSHHHHHHCC-
T ss_pred             ccCCCCCcccCCCC-CCCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCChhhHHHHHHH
Confidence            99999987899999 77899999999999999999899999998888899999999999999999997667899999999


Q ss_pred             hcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791          241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  287 (292)
Q Consensus       241 y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~  287 (292)
                      |++|+++|++||+.||+.|+++|+|||+||++++++.|++++..+++
T Consensus       340 y~~G~l~~g~lK~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~  386 (395)
T 3i05_A          340 YMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIM  386 (395)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCC
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhChhcc
Confidence            99999999999999999999999999999999999999999987765

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0

Probab=100.00  E-value=8.3e-73  Score=537.66  Aligned_cols=285  Identities=53%  Similarity=0.933  Sum_probs=253.6

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhhee
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT   80 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t   80 (292)
                      +++|||+++|+.++|+|||+||++.++ .+++++++++++++++|+|||+||+|++||.||+|++ .++..+++|+|++|
T Consensus        98 ~~~~lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~-~~~~~~~~l~r~~t  176 (393)
T 3hv0_A           98 FTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA-ELYPDILRIEKKIS  176 (393)
T ss_dssp             HHHHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHHH-HHHHHHHHHHHHSB
T ss_pred             HHHHHHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHHH-HHHHHHHHHHccCC
Confidence            589999988999999999999987764 9999999999999999999999999999999999985 56888999999999


Q ss_pred             ecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccc
Q 022791           81 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF  160 (292)
Q Consensus        81 ~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~  160 (292)
                      +++++++.|+.++.++|+|+||+|||||+++.+||.++..++|++|+||||.||+||+++|||+|+|||+++|.++++++
T Consensus       177 ~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~  256 (393)
T 3hv0_A          177 CSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIF  256 (393)
T ss_dssp             HHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEECC
T ss_pred             HHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHHHHcCCCCceeeccCc
Confidence            99999999888889999999999999988888888777778888899999999999999999999999999999999999


Q ss_pred             cccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHHh
Q 022791          161 FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE  240 (292)
Q Consensus       161 lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~~  240 (292)
                      ||||+|+++|||||++||+|+|+|+|++|++|||+||+||++.+.+++++.||||++|++|+|+++|+.+++++++++++
T Consensus       257 l~gLdG~~~KMSKS~~nsaI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~eei~~~  336 (393)
T 3hv0_A          257 LPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKK  336 (393)
T ss_dssp             CCC-------------CCCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             ccCCCCCCcCCCCCCCCCeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChhHHHHHHHH
Confidence            99999987899999999999999999999999999999999988887778899999999999999997678899999999


Q ss_pred             hcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791          241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  287 (292)
Q Consensus       241 y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~  287 (292)
                      |++|+++|++||+.||+.|+++|+|+|+||++++++.|++++..++.
T Consensus       337 y~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~  383 (393)
T 3hv0_A          337 YSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKSRE  383 (393)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCcCHH
Confidence            99999999999999999999999999999999999999999988764

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}

Probab=100.00  E-value=7.1e-72  Score=536.85  Aligned_cols=286  Identities=48%  Similarity=0.809  Sum_probs=269.2

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccc-hhhhHhHHHhhhhe
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKCV   79 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~-~~~~~~~~~l~r~~   79 (292)
                      +++|||+++|++++|+|+|+||++.++ .+++++++|+++++++|+|||+||+|++||.||+|++ .+|+..+.+|+|++
T Consensus       115 ~l~~lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~r~~  194 (451)
T 3foc_A          115 FTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRML  194 (451)
T ss_dssp             HHHHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHHHTC
T ss_pred             HHHHHHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHHhhC
Confidence            589999988999999999999999764 8999999999999999999999999999999999987 78999999999999


Q ss_pred             eecceeeccccCCCCccccccCCccccCCCCCCCC----------------------------------CccccCCCc--
Q 022791           80 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF----------------------------------PHLFSGKDH--  123 (292)
Q Consensus        80 t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~----------------------------------~Dil~~~ad--  123 (292)
                      |+++++++.++.++.++|+|+||+|||||++++.|                                  .|||+|+++  
T Consensus       195 Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  274 (451)
T 3foc_A          195 PISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVV  274 (451)
T ss_dssp             CHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCHHHHH
T ss_pred             CHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhhhhhcccc
Confidence            99999999998888999999999999999988777                                  268888887  


Q ss_pred             ------------ccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecCCHHHHHH
Q 022791          124 ------------LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN  191 (292)
Q Consensus       124 ------------~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~k  191 (292)
                                  ++|+||||+||+||+|+||++|+|||+++|.++++++||||+|+++|||||++||+|+|+|+|++|++
T Consensus       275 ~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~p~~I~k  354 (451)
T 3foc_A          275 EELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIKN  354 (451)
T ss_dssp             HHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCCHHHHHH
T ss_pred             hhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecCCHHHHHH
Confidence                        78899999999999999999999999999999999999999998789999999999999999999999


Q ss_pred             HhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 022791          192 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA  271 (292)
Q Consensus       192 KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~  271 (292)
                      |||++|+||+..+.++++++|+||++|++|+|+.+|+.+++++++++++|++|+++|++||+.|++.|+++|+|||+||+
T Consensus       355 KI~k~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~  434 (451)
T 3foc_A          355 KINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRD  434 (451)
T ss_dssp             HHHHHSCCCSCSSHHHHHTTCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccCCCCccchhcccCCCCcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998899999888888899999999999999999976778999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHhhhcccCC
Q 022791          272 AVTDEMVDAFMAVRPL  287 (292)
Q Consensus       272 ~~~~~~l~~~l~~~~~  287 (292)
                      +++++.|++++..+++
T Consensus       435 ~l~~d~v~~f~~~~~~  450 (451)
T 3foc_A          435 KVDTTMIESFTVKKEL  450 (451)
T ss_dssp             TCCHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHhhCcccC
Confidence            9999999999987764

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}

Probab=100.00  E-value=9.6e-72  Score=529.83  Aligned_cols=272  Identities=39%  Similarity=0.683  Sum_probs=238.8

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhhee
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT   80 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t   80 (292)
                      +++|||+++|+.++|+|||+||+++++ .+++++++++++++++|+|||+||+|++||.||+|++  ++..+..|++++|
T Consensus        96 ~~~~lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~--~~~~~~~l~~~~t  173 (392)
T 3jxe_A           96 ATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFTK--IYEMAIPIAKKIN  173 (392)
T ss_dssp             HHHHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTSTH--HHHHHHHHHHHSB
T ss_pred             HHHHHHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchhHH--HHHHHHHHHhhCC
Confidence            579999977999999999999999865 8999999999999999999999999999999999986  8888999999999


Q ss_pred             ecceeeccccCCCCccccccCCccccCCCCCCCCCccccCC-CcccccccccccCCCccccccccCcccCCCCccchhcc
Q 022791           81 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS  159 (292)
Q Consensus        81 ~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~-ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~  159 (292)
                      ++++++..+++++.++|+|+||+||||        |||.++ +   |+||||.||+||+++||++|+|||+++|.+++++
T Consensus       174 ~~~~~~~~~~~~~~~~g~f~YP~LQaa--------Dil~~~~a---~~vpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~  242 (392)
T 3jxe_A          174 FSMAKAVFGFTEQSKIGMIFFPAIQIA--------PTFFERKR---CLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSK  242 (392)
T ss_dssp             HHHHHHHHCCCTTSBHHHHHHHHHHHG--------GGGSSSSC---EEEEEEGGGHHHHHHHHHHTGGGTSCCCEEEEEC
T ss_pred             HHHHhhhhccCCCCchHHHHHHHHHHh--------hHHhhcCC---ceeecccchHHHHHHHHHHHHHcCCCCCeeeecc
Confidence            999999988888899999999999999        999994 5   6899999999999999999999999999999999


Q ss_pred             ccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc-cChHHHHHHH
Q 022791          160 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIK  238 (292)
Q Consensus       160 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~eel~  238 (292)
                      +||||+|+++|||||+|||+|+|+|+|++|++|||+||+||+..+.+++++.++||++|++|+|+.+|+ .+++++++++
T Consensus       243 ~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~~~~~eel~  322 (392)
T 3jxe_A          243 FVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERY  322 (392)
T ss_dssp             CCCCSSCSSSCCCTTSGGGCCBTTCCHHHHHHHHHTCC--------------------CHHHHHHHHTTCCCHHHHHHHH
T ss_pred             cccCCCCCccccccCCCCCeeeCCCCHHHHHHHHHhhccCCCCcccccccccCCCCchhHHHHHHHHHHcCCcchHHHHH
Confidence            999999987899999999999999999999999999999999988888888899999999999999986 4678999999


Q ss_pred             HhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791          239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  287 (292)
Q Consensus       239 ~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~  287 (292)
                      ++|.+|+++|++||+.||++|+++|+|||+||++++ ++|++++..+++
T Consensus       323 ~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~-~~v~~~l~~g~~  370 (392)
T 3jxe_A          323 YACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE-KLVEKFKYTGKL  370 (392)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSHHHHHTTSHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcc
Confidence            999999999999999999999999999999999999 699999988764

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A

Probab=100.00  E-value=5.1e-68  Score=510.10  Aligned_cols=288  Identities=63%  Similarity=1.074  Sum_probs=262.2

Q ss_pred             chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch--hhhHhHHHhhhhe
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG--AFYKNMVKVAKCV   79 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~--~~~~~~~~l~r~~   79 (292)
                      +++|||+.+||.++|+|||+||++++..+++++++|+++++++|+|||+||+|++||.||+|++.  +++..+++|+||+
T Consensus       132 ~~~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~nSd~~~~l~~~~~l~~~v~rm~  211 (437)
T 1r6u_A          132 FTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHV  211 (437)
T ss_dssp             HHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGGGCTTHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEechhhhhhHHHHHHHHHHHHhhc
Confidence            57999997799999999999999985589999999999999999999999999999999999863  7899999999999


Q ss_pred             eecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcc
Q 022791           80 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS  159 (292)
Q Consensus        80 t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~  159 (292)
                      +++++++++++.++.++|+|+||+|||||++..+++-.+..+...+|+||||.||+||++++|++|+|||+++|.+++++
T Consensus       212 ~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i~l~Rdla~r~~~~~P~~l~~p  291 (437)
T 1r6u_A          212 TFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHST  291 (437)
T ss_dssp             BHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEEC
T ss_pred             cHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHHHHHHHHHHHHhCCCCceEeecc
Confidence            99999998887788999999999999995544444333332333448999999999999999999999999999999999


Q ss_pred             ccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHH
Q 022791          160 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK  239 (292)
Q Consensus       160 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~  239 (292)
                      +||||+|+++|||||++||+|+|+|+|++|++||++|||||+..+.+++++.|+||++|+++.|+++|+.+++++++|++
T Consensus       292 ll~gLdG~~~KMSKS~~nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~  371 (437)
T 1r6u_A          292 FFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRK  371 (437)
T ss_dssp             CCEETTEEEEECCTTSSSSCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHCCCHHHHHHHHH
T ss_pred             cccCCCCCccccCCCCCCCeeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHcCCHhHHHHHHH
Confidence            99999997789999999989999999999999999999999988888888899999999999999999767889999999


Q ss_pred             hhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCC
Q 022791          240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN  289 (292)
Q Consensus       240 ~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~~~  289 (292)
                      +|.+|+++++++|+.||+.|+++++|+|+||++++++.+++++..+++..
T Consensus       372 ~~~~G~~~~~~~K~~LAe~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~  421 (437)
T 1r6u_A          372 DYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSF  421 (437)
T ss_dssp             HHHHTSSCSTTHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTSCCCCSC
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCc
Confidence            99999899999999999999999999999999999988999999887653

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A

Probab=100.00  E-value=9.6e-68  Score=514.19  Aligned_cols=288  Identities=63%  Similarity=1.082  Sum_probs=262.8

Q ss_pred             chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccc--hhhhHhHHHhhhhe
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCV   79 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~--~~~~~~~~~l~r~~   79 (292)
                      +++|||+.+||.++|+|||+||++++..+++++++|+++++++|+|||+||+|++||.||+|++  .+++..+++|+|++
T Consensus       179 ~~~~lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~nsd~~~~l~~~~~~~~~l~r~~  258 (477)
T 1r6t_A          179 FTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHV  258 (477)
T ss_dssp             HHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHGGGCTTHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEechhhhcccHHHHHHHHHHHhhc
Confidence            5799999779999999999999998558999999999999999999999999999999999986  37999999999999


Q ss_pred             eecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcc
Q 022791           80 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS  159 (292)
Q Consensus        80 t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~  159 (292)
                      |++++++++++.++.++|+|+||+|||||++..+++.++..+...+|+||||.||++|++++|++|+|||+++|.+++++
T Consensus       259 t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~p  338 (477)
T 1r6t_A          259 TFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHST  338 (477)
T ss_dssp             BHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEEC
T ss_pred             cHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHHHHHHHHHHHHhCCCCceeeecc
Confidence            99999998887788999999999999996555555433332333448999999999999999999999999999999999


Q ss_pred             ccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHH
Q 022791          160 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK  239 (292)
Q Consensus       160 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~  239 (292)
                      +||||+|+++|||||.+||+|+|+|+|++|++||++||||++..+.++++..|+||++|+++.|+++|+.+++++++|++
T Consensus       339 ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~  418 (477)
T 1r6t_A          339 FFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRK  418 (477)
T ss_dssp             CCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHH
T ss_pred             cccCCCCCccccCCCCCCCceeecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999997789999999989999999999999999999999988888888899999999999999999767889999999


Q ss_pred             hhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCC
Q 022791          240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN  289 (292)
Q Consensus       240 ~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~~~  289 (292)
                      +|.+|+++++++|+.||+.|+++|+|||+||++++++.|++++..+++..
T Consensus       419 ~~~~G~~~~~~~K~~Lae~i~~~l~pirer~~~~~~~~v~~~~~~~~~~~  468 (477)
T 1r6t_A          419 DYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAA  468 (477)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC-
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence            99999899999999999999999999999999999988999998887653

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*

Probab=100.00  E-value=2.2e-67  Score=506.18  Aligned_cols=283  Identities=54%  Similarity=0.918  Sum_probs=253.0

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhhee
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT   80 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t   80 (292)
                      +++|||+.+||.++|+|||+||+++++ .+++.+++++++++++|+|||+||+|++||.||+|++.+++..+.+++||++
T Consensus       126 ~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~k~~i~~nSd~~~~~~~~~~~~v~rm~~  205 (432)
T 2ip1_A          126 FTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQIT  205 (432)
T ss_dssp             HHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHCSHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCchhhhhhHHHHHHHHHhhhc
Confidence            578999977999999999999999865 8999999999999999999999999999999999987788888999999999


Q ss_pred             ecceeeccccCCCCccccccCCccccCCCCCCCCCcccc---CCCcccccccccccCCCccccccccCcccCCCCccchh
Q 022791           81 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS---GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIE  157 (292)
Q Consensus        81 ~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~---~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~  157 (292)
                      ++++++++|+.++.++|+|+||+|||||+++.+++.++.   +++   |+||||.||+||++++|++|+|||+++|.+++
T Consensus       206 ~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~---~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~  282 (432)
T 2ip1_A          206 GSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTP---CLIPCAIDQDPYFRVCRDVADKLKYSKPALLH  282 (432)
T ss_dssp             HHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCC---EEEEEEGGGHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             HHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCc---eEEEeccCcHHHHHHHHHHHHHhCCCCceeec
Confidence            999999888778889999999999999777666654443   444   79999999999999999999999999999989


Q ss_pred             ccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHH
Q 022791          158 SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI  237 (292)
Q Consensus       158 ~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel  237 (292)
                      +++||||+|+++|||||.+||+|+|+|+|++|++||++||||++..+.+++++.|+||++|+++.||.+|..+++++++|
T Consensus       283 ~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~~~eieel  362 (432)
T 2ip1_A          283 SRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKEC  362 (432)
T ss_dssp             ECCCCCTTC--------CGGGCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHH
T ss_pred             cccccCCCCCccccCCCCCCCeEeccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCCHhHHHHH
Confidence            99999999987899999998899999999999999999999999888888888999999999999999987678899999


Q ss_pred             HHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791          238 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  287 (292)
Q Consensus       238 ~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~  287 (292)
                      +++|.+|+++|+++|+.||+.|+++++|+|+||++++++.++++...+++
T Consensus       363 ~~~~~~G~~~~~~~K~~La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~  412 (432)
T 2ip1_A          363 YDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL  412 (432)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCC
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHH
Confidence            99999998999999999999999999999999999999778887766654

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}

Probab=100.00  E-value=2.1e-67  Score=492.49  Aligned_cols=263  Identities=17%  Similarity=0.246  Sum_probs=233.7

Q ss_pred             hhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHH
Q 022791            3 TKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV   73 (292)
Q Consensus         3 ~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~   73 (292)
                      .+|  ||+.  +.++|+||||||+|+ +.+++++++++++++++|+|||+||+|++||.||+|++|    |.+.   .++
T Consensus        29 ~~~~~lQ~~--~~~~~~iaD~ha~~~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~qS~v~~~~el~~~l~~~~~~~  105 (341)
T 3sz3_A           29 RQWQQMQDD--YDCQYCVVDLHAITV-RQDPQALHEATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMG  105 (341)
T ss_dssp             GGHHHHHHH--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHhc--CeEEEEEecceeEcC-CCCHHHHHHHHHHHHHHHHHcCCChhhcEEEeccchhhhHHHHHHHHhhccHH
Confidence            467  9994  667888999999998 589999999999999999999999999999999999976    3233   379


Q ss_pred             HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC---
Q 022791           74 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY---  150 (292)
Q Consensus        74 ~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~---  150 (292)
                      +|+|+++++++..+++  ++.++|+|+||+||||        |||.|++|   +||||.||+||+|+|||+|+|||+   
T Consensus       106 ~l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQaa--------Dil~~~ad---~vpvG~DQ~~hlel~Rdia~rfn~~yg  172 (341)
T 3sz3_A          106 ELSRMTQFKDKSARYA--NDVNAGLFGYPVLMAA--------DILLYGAH---QVPVGSDQKQHLELARDIATRFNNIYS  172 (341)
T ss_dssp             HHHTCHHHHHHHHHHG--GGCCHHHHHHHHHHHH--------HHHTTTCS---EECCCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhcc--CCCChhhHHhHHHHHH--------HHHHcCCC---EEEeccchHHHHHHHHHHHHHhchhcc
Confidence            9999999999887653  5789999999999999        99999995   899999999999999999999982   


Q ss_pred             ------CCccchh---ccccccccCCcccccccCC--CceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccc
Q 022791          151 ------HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI  219 (292)
Q Consensus       151 ------~~p~~l~---~~~lpgL~g~~~KMSkS~~--~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~  219 (292)
                            +.|..+.   +++||||+|+++|||||+|  +|+|+|+|+|++|++|||+ |+||+..+.+++++++++|++++
T Consensus       173 ~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~-a~Td~~~~~~~~~~~~~~p~v~~  251 (341)
T 3sz3_A          173 PEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINK-AQTDAETPPRIAYDVENKAGIAN  251 (341)
T ss_dssp             SSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHHH
T ss_pred             CCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhh-ccCCCCCCcccccCCCCCcchhH
Confidence                  2444333   5799999766689999998  6899999999999999999 99999875555677899999999


Q ss_pred             cchhhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791          220 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  285 (292)
Q Consensus       220 ~~~~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~  285 (292)
                      +|.|++.|  +++++++++++|. |+++|++||+.|++.|+++|+|||+||+++.++  +|+++|..+
T Consensus       252 l~~~~~~~--~~~~~e~i~~~~~-g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~l~~il~~G  316 (341)
T 3sz3_A          252 LMGLYSAA--TGKTFAEIEAQYA-GVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDG  316 (341)
T ss_dssp             HHHHHHHH--HCCCHHHHHHHTT-TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHc--CCccHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999  5678999999999 668999999999999999999999999999876  899999875

>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*

Probab=100.00  E-value=2.6e-65  Score=484.15  Aligned_cols=273  Identities=26%  Similarity=0.362  Sum_probs=241.0

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhhee
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT   80 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t   80 (292)
                      +.+|+|+. |+.++|+||||||+|++. .+++.++.++++++++|+||||||+|++||.||++. ..++..+..+++.+|
T Consensus        93 ~~~~lq~~-~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~-~~~~~l~~~~~~~~~  170 (372)
T 3a04_A           93 QLIYLQKN-GFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRG-TPYFRLIQLFSGKVT  170 (372)
T ss_dssp             HHHHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSC-HHHHHHHHHHTTSSC
T ss_pred             HHHHHHhC-CCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccch-HHHHHHHHHHHhhhh
Confidence            35679985 999999999999999855 566779999999999999999999999999999864 456667788899999


Q ss_pred             ecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC----CCCccch
Q 022791           81 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----YHKPALI  156 (292)
Q Consensus        81 ~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n----~~~p~~l  156 (292)
                      +.++.+..+   ..+.|.++||+|||||+++.+++.++.|++   |+||||+||+||+|+|||+|+|||    .++|..+
T Consensus       171 ~~~~~~~~~---~~~~~~~~yP~lqAaDil~~~~d~~~gy~a---~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~  244 (372)
T 3a04_A          171 AAEMEAIYG---ELTPAKMMASLTQAADILHVQLDEYGGYRH---VVVPVGADQDPHLRLTRDLADRMAGVVELERPAST  244 (372)
T ss_dssp             HHHHHHHHS---SCCHHHHHHHHHHHHHHHGGGSGGGTCCCC---EEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEE
T ss_pred             HHHHhhhhh---ccCcccccCCcchhHHHhhhcCccccCccc---eecccchhhHHHHHHHHHHHHHhcCcccccChhhh
Confidence            998887754   567899999999999655555554455666   799999999999999999999998    4789999


Q ss_pred             hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhh-hccChHHHH
Q 022791          157 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF-FLEDDAELE  235 (292)
Q Consensus       157 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~-~~~~~~~~e  235 (292)
                      +++++|||+|  .|||||+|||+|+|+|+|++|++|||+ |+||++.+.+++++.||+|++|++|.++.+ +..++++++
T Consensus       245 ~~~~~pgldG--~KmS~S~~ns~I~l~D~p~~i~kKI~k-a~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d~~e~~  321 (372)
T 3a04_A          245 YHKLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVK  321 (372)
T ss_dssp             EECCCBCTTS--SBCCTTSGGGSCBTTCCHHHHHHHHHT-CCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCSHHHHH
T ss_pred             hhcccCCCCC--CccCCCCCCcccccCCCHHHHHHHHhc-CccCCCCCcccccccCCCCchhhHHHHHHHccCCCHHHHH
Confidence            9999999999  699999999999999999999999999 999999999999999999999999987443 445788999


Q ss_pred             HHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccC
Q 022791          236 HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRP  286 (292)
Q Consensus       236 el~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~  286 (292)
                      +++++|++|+++||+||+.|++.|+++|+|+|+||++..+ ++++++....
T Consensus       322 ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer~e~~~~-~~~kile~~r  371 (372)
T 3a04_A          322 HIYTSCRLGKILCGECKQIAWEKLERFLAEHQSRLEKAKT-IAWKLVEPPR  371 (372)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTSCCCCC
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhcccC
Confidence            9999999999999999999999999999999999998776 8888887653

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}

Probab=100.00  E-value=1e-65  Score=487.20  Aligned_cols=258  Identities=20%  Similarity=0.233  Sum_probs=220.8

Q ss_pred             hhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHHHhh
Q 022791            4 KYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVA   76 (292)
Q Consensus         4 ~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~   76 (292)
                      .|||+  |+.++|+||||||+|+ +.+++.+++++++++++|+|||+||+|++||.||+|++|    |.+.   .+++|+
T Consensus        61 ~~LQ~--~~~~~~~IaD~hAlt~-~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~~~el~w~l~~~~~~~~L~  137 (388)
T 3prh_A           61 VELQH--DYNSYFCIVDQHAITV-PQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELE  137 (388)
T ss_dssp             HHTTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHc--cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecccccchHHHHHHHHhhccHHHHH
Confidence            34897  7778899999999998 689999999999999999999999999999999999986    3333   489999


Q ss_pred             hheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC------
Q 022791           77 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY------  150 (292)
Q Consensus        77 r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~------  150 (292)
                      |+++|+++.+..   ++.++|+|+||+||||        |||.|++|   +||||+||+||+|+|||+|+|||+      
T Consensus       138 R~~~fk~k~~~~---~~~~~g~~~YPvLQAA--------DIl~~~ad---~vPvG~DQ~~hleltRdia~rfn~~y~~~f  203 (388)
T 3prh_A          138 RMTQFKDKSKGN---EAVVSGLLTYPPLMAA--------DILLYGTD---LVPPGEDQKQHLELTRNLAERFNKKYNDIF  203 (388)
T ss_dssp             TTC-------------CCBHHHHSCHHHHHH--------HHHTTTCC---EECCCSSCHHHHHHHHHHHHHHHHHTCSCC
T ss_pred             hhhhHhHHhhcc---CCCcchhHhhHHHHHH--------HHHHhCCC---EEEechhHHHHHHHHHHHHHHhCcccCCCc
Confidence            999999877542   6789999999999999        99999995   899999999999999999999995      


Q ss_pred             CCccchh---ccccccccCCcccccccCC--CceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhh
Q 022791          151 HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS  225 (292)
Q Consensus       151 ~~p~~l~---~~~lpgL~g~~~KMSkS~~--~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~  225 (292)
                      +.|..+.   +++||||+|+++|||||+|  +|+|+|+|+|++|++|||+ |+||+...++  ++++++|++++++.|++
T Consensus       204 ~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~k-a~TD~~~~~~--~~~~~~p~v~~l~~i~~  280 (388)
T 3prh_A          204 TIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVK--FDKENKPGVSNLLTIYS  280 (388)
T ss_dssp             CCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHT-CCCCSSCCCC--CCTTTCHHHHHHHHHHH
T ss_pred             ccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhh-ccCCCCCccc--CCCCCCCCcchHHHHHH
Confidence            2243332   4789999887789999997  6899999999999999999 9999865432  44689999999999999


Q ss_pred             hhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHhhhccc
Q 022791          226 FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR  285 (292)
Q Consensus       226 ~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~-~l~~~l~~~  285 (292)
                      .+  +++++++++++|. |. +|++||+.|+++|+++|+|||+||++++++ +|+++|..+
T Consensus       281 ~~--~~~~~eel~~~y~-g~-~~g~lK~~lae~l~~~l~pirer~~~~~~~~~l~~il~~G  337 (388)
T 3prh_A          281 IL--GNTTIEELEAKYE-GK-GYGEFKGDLAEVVVNALKPIQDRYYELIESEELDRILDEG  337 (388)
T ss_dssp             HH--HTCCHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             hc--CCCcHHHHHHHHc-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            98  5678999999999 76 999999999999999999999999999876 899998865

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1

Probab=100.00  E-value=2.4e-66  Score=485.63  Aligned_cols=262  Identities=17%  Similarity=0.255  Sum_probs=231.2

Q ss_pred             hhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHH
Q 022791            3 TKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV   73 (292)
Q Consensus         3 ~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~   73 (292)
                      .+|  ||+  ++.++|+||||||+|+ ..+++.+++++++++++|+|||+||+|++||.||+|++|    |.+.   .++
T Consensus        38 ~~~~~lQ~--~~~~~~~iaD~hA~t~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~v~~~~el~~~l~~~~~~~  114 (346)
T 3n9i_A           38 RQWVQMQD--DYDCIYCIVDLHAITA-RQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFG  114 (346)
T ss_dssp             HHHHTTTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGCTHHHHHHHHHHTTSBHH
T ss_pred             HHHHHHHh--hCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccccccchHHHHHHHHHhhHH
Confidence            577  898  4678899999999997 589999999999999999999999999999999999986    3233   379


Q ss_pred             HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC---
Q 022791           74 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY---  150 (292)
Q Consensus        74 ~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~---  150 (292)
                      +|+|+++++++..+.  .++.++|+|+||+||||        |||.|++|   +||||.||+||+|+|||+|+|||+   
T Consensus       115 ~l~R~~~~k~~~~~~--~~~~~~g~~~YP~lQAa--------Dil~~~ad---~vpvG~DQ~~hleltRdia~rfn~~yg  181 (346)
T 3n9i_A          115 ELSRMTQFKDKSARY--AENINAGLFDYPVLMAA--------DILLYQTN---QVPVGEDQKQHLELSRDIASRFNNLYG  181 (346)
T ss_dssp             HHHTCHHHHHHHHHS--GGGCBHHHHHHHHHHHH--------HHHTTTCS---EECCCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcc--CCCCCchhHHhHHHHHH--------HHHHhCce---EEEeccchHHHHHHHHHHHHHhccccC
Confidence            999999999887654  25689999999999999        99999995   899999999999999999999993   


Q ss_pred             ---CCccchh---ccccccccCCcccccccCCC--ceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccch
Q 022791          151 ---HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK  222 (292)
Q Consensus       151 ---~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~  222 (292)
                         +.|..+.   +++||||+|+++|||||+||  |+|+|+|+|++|++|||+ |+||+..+.+++++.+++|++++++.
T Consensus       182 ~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~k-A~Td~~~~~~~~~~~~~~p~v~~l~~  260 (346)
T 3n9i_A          182 DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKR-AMTDSDEPALIRYDVEKKAGVSNLLD  260 (346)
T ss_dssp             SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHHHHHH
T ss_pred             CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHh-CcCCCCCCccccCCCCCCCChhHHHH
Confidence               4565444   37999997666899999986  899999999999999999 99999864344567789999999999


Q ss_pred             hhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791          223 YLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  285 (292)
Q Consensus       223 ~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~  285 (292)
                      |++.|  +++++++++++|.+|  ++++||+.|+++|+++|+|||+||+++.++  +|+++|..|
T Consensus       261 ~~~~~--~~~~~eel~~~y~~~--~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~l~~il~~G  321 (346)
T 3n9i_A          261 ILSGV--TGQSIPELEAQFTGQ--MYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREG  321 (346)
T ss_dssp             HHHHH--HCCCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHhc--CCccHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            99988  557899999999865  699999999999999999999999999976  999999875

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*

Probab=100.00  E-value=7.4e-64  Score=466.15  Aligned_cols=256  Identities=17%  Similarity=0.206  Sum_probs=228.8

Q ss_pred             hhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHHHh
Q 022791            3 TKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKV   75 (292)
Q Consensus         3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l   75 (292)
                      .+|||+  |+.++|+||||||+|++ .+++++++++++++++|+|||+||+|++||.||+|++|    |.+.   .+.+|
T Consensus        28 ~~~lQ~--g~~~~~~iaD~ha~~~~-~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~~~el~~~l~~~~~~~~l  104 (322)
T 3tzl_A           28 MVDAQE--KSQMFMFIANYHAMTSS-QDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLL  104 (322)
T ss_dssp             HHHTTT--TSCCEEEECHHHHTTTC-CCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHHGGGCBHHHH
T ss_pred             HHHHhc--CCCEEEEEecCeeecCC-CCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcchhHHHHHHHHhccCcHHHH
Confidence            345999  88899999999999975 79999999999999999999999999999999999986    2222   37899


Q ss_pred             hhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC-----
Q 022791           76 AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-----  150 (292)
Q Consensus        76 ~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~-----  150 (292)
                      +|++++|+....   .++.++|+|+||+||||        |||.|+++   +||||.||+||+++|||+|+|||+     
T Consensus       105 ~r~~~~K~~~~~---~~~~~~g~f~YP~LQAa--------Dil~~~~~---~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~  170 (322)
T 3tzl_A          105 ERAHSYKDKVAK---GLSASHGLFSYPVLMAA--------DILLFDTR---IVPVGKDQIQHVEIARDIALKVNNEWGEI  170 (322)
T ss_dssp             HSCHHHHHHHHT---TCCCBHHHHHHHHHHHH--------HHHHTTCS---EEECCGGGHHHHHHHHHHHHHHHHHHCSC
T ss_pred             HhhhHHHHHHcc---CCCCchHHHHHHHHHHH--------HHHHhCCc---EEEeccchHHHHHHHHHHHHHhcccccCC
Confidence            999999875443   35789999999999999        99999995   899999999999999999999986     


Q ss_pred             -CCccchh---ccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhh
Q 022791          151 -HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF  226 (292)
Q Consensus       151 -~~p~~l~---~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~  226 (292)
                       ++|..++   +++||||+|  +|||||++| +|+|+|+|++|++||++ |+|||..+.     ..+||+++++++|+++
T Consensus       171 f~~P~~~~~~~~~~l~~l~G--~KMSKS~~n-~I~L~d~p~~i~~KI~~-a~td~~~~~-----~~~~~~~~~v~~~~~~  241 (322)
T 3tzl_A          171 FTLPEARVNEEVAVVVGTDG--AKMSKSYQN-TIDIFSSEKTLKKQISS-IVTDSTALE-----DPKDHENCNIFKIAKL  241 (322)
T ss_dssp             SCCCEEECCCSSCCCBCTTS--SBCCGGGTC-CCBSSCCHHHHHHHHHT-CCCCCCCTT-----SCCCGGGCHHHHHHGG
T ss_pred             CCCchhhhccccccccCCCC--CcCCCCCCC-ceecCCCHHHHHHHHHh-ccCCCcccc-----CCCCCcchhHHHHHHH
Confidence             5564433   799999999  799999987 89999999999999999 999997652     3578999999999999


Q ss_pred             hccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791          227 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  285 (292)
Q Consensus       227 ~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~  285 (292)
                      |+ +++++++++++|.+|+++|+++|+.||+.|+++|+|||+||++++++  +|+++|..+
T Consensus       242 ~~-~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~~il~~G  301 (322)
T 3tzl_A          242 FL-DESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKEILDFG  301 (322)
T ss_dssp             GC-CHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             hC-ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            96 56789999999999889999999999999999999999999999986  899999875

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}

Probab=100.00  E-value=1e-63  Score=469.72  Aligned_cols=263  Identities=18%  Similarity=0.238  Sum_probs=229.4

Q ss_pred             chhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hH
Q 022791            2 FTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NM   72 (292)
Q Consensus         2 ~~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~   72 (292)
                      +.+|  ||+  |+.++|+||||||+|++ .+++++++++++++++|+||||||+|+.||.||+|++|    |++.   .+
T Consensus        26 l~~~~~lQ~--~~~~~~~IaD~ha~~~~-~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~qS~~~~~~el~w~l~~~~~~  102 (348)
T 2yy5_A           26 MQSLIELQE--QCQLFVFVADLHSITVD-FQPQALKQNNFDLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNL  102 (348)
T ss_dssp             GGGHHHHHH--HSEEEEEECHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGCHHHHHHHHHHHHHSBH
T ss_pred             HHHHHHHHh--CCcEEEEEcChhhccCC-CCHHHHHHHHHHHHHHHHHhCCChhHeEEEECCcccchhHHHHHHHhhccH
Confidence            3577  998  67789999999999985 89999999999999999999999999999999999976    3333   37


Q ss_pred             HHhhhheeecceeecccc----CCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCccc
Q 022791           73 VKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI  148 (292)
Q Consensus        73 ~~l~r~~t~~~~~~~~g~----~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~  148 (292)
                      .+|+|++++++..++.++    .++.++|+|+||+||||        |||.|++|   +||||.||+||+|++|++|+||
T Consensus       103 ~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaa--------Dil~~~a~---~vpvG~DQ~~~lel~Rdia~r~  171 (348)
T 2yy5_A          103 GELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAG--------DILLYQPD---IVPVGNDQKQHLELTRDLAQRI  171 (348)
T ss_dssp             HHHHHCHHHHTTC-----------CCBTHHHHHHHHHHH--------HHHTTCCS---EEECCGGGHHHHHHHHHHHHHH
T ss_pred             HHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHH--------HHHHhCcc---EEEecccHHHHHHHHHHHHHHh
Confidence            999999999988765432    45789999999999999        99999995   8999999999999999999999


Q ss_pred             C------CCCccchh---ccccccccCCcccccccCCCc--eeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccc
Q 022791          149 G------YHKPALIE---SSFFPALQGETGKMSASDPNS--AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV  217 (292)
Q Consensus       149 n------~~~p~~l~---~~~lpgL~g~~~KMSkS~~~s--~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~  217 (292)
                      |      +++|..++   +++||||+||++|||||++|+  +|+|+|+|++|++|||+ |+||+..+..  ++++++|++
T Consensus       172 n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~-a~td~~~~~~--~~~~~~p~v  248 (348)
T 2yy5_A          172 QKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQ-ATTDSFNKIR--FASKTQPGV  248 (348)
T ss_dssp             HHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHT-CCCCSSCCCS--CCTTTCHHH
T ss_pred             hhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHh-CCCCCccccc--cCCCCCCch
Confidence            8      56787766   599999999888999999985  99999999999999999 9999965433  346778999


Q ss_pred             cccchhhhhhccChHHHH---------HHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhccc
Q 022791          218 DIPVKYLSFFLEDDAELE---------HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR  285 (292)
Q Consensus       218 ~~~~~~l~~~~~~~~~~e---------el~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~  285 (292)
                      ++++.|+++|  ++++++         +|+++|. | ++|+++|+.||+.|+++|+|||+||+++.+..|+++|..+
T Consensus       249 ~~~~~~~~~~--~~~~~~~~~~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~d~~~~~~l~~G  321 (348)
T 2yy5_A          249 TNMLTILKAL--LKEPVNQSLTNQLGNDLEAYFS-T-KSYLDLKNALTEATVNLLVNIQRKREQISREQVFNCLQAG  321 (348)
T ss_dssp             HHHHHHHHHH--TTSGGGHHHHHHHCSCHHHHGG-G-CCHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             hhHHHHHHhC--ChHhhhhhcccchHHHHHHHHc-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            9999999999  567899         9999999 7 8999999999999999999999999999433599998865

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A

Probab=100.00  E-value=1.9e-63  Score=464.59  Aligned_cols=259  Identities=21%  Similarity=0.277  Sum_probs=230.4

Q ss_pred             hhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHH
Q 022791            3 TKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV   73 (292)
Q Consensus         3 ~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~   73 (292)
                      .+|  ||+  |+.++|+||||||+|+ +.+++++++++++++++|+|||+||+|++||.||+|++|    |.+.   .++
T Consensus        24 ~~~~~lQ~--g~~~~~~IaD~ha~~~-~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS~~~~~~~l~w~l~~~~~~~  100 (328)
T 1i6k_A           24 RQFVELQH--EYNCYFCIVDQHAITV-WQDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIG  100 (328)
T ss_dssp             HHHHHHTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGCTHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHc--CCcEEEEEeCceeecC-CCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecCchhhhhHHHHHHhccccHH
Confidence            467  588  7888999999999998 699999999999999999999999999999999999876    3333   378


Q ss_pred             HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC----
Q 022791           74 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----  149 (292)
Q Consensus        74 ~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n----  149 (292)
                      +|+|+++|++..++ +  ++.++|+|+||+||||        |||.|+++   +||||.||+||++++|++|+|||    
T Consensus       101 ~l~r~~~~k~~~~~-~--~~~~~g~f~YPvLQaa--------Dil~~~~~---~vpvG~DQ~~~iel~Rdia~r~n~~yg  166 (328)
T 1i6k_A          101 ELERMTQFKEKSAG-K--EAVSAGLLTYPPLMAA--------DILLYNTD---IVPVGEDQKQHIELTRDLAERFNKRYG  166 (328)
T ss_dssp             HHHTCHHHHHHHTT-C--SSCCHHHHTHHHHHHH--------HHHTTTCS---EEECCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc-c--CCCCchhhccHHHHHH--------HHHHhCCC---EEecccchHHHHHHHHHHHHHhCcccc
Confidence            99999999987654 2  6789999999999999        99999995   89999999999999999999999    


Q ss_pred             --CCCccchh---ccccccccCCcccccccCCCce--eEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccch
Q 022791          150 --YHKPALIE---SSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK  222 (292)
Q Consensus       150 --~~~p~~l~---~~~lpgL~g~~~KMSkS~~~s~--I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~  222 (292)
                        +++|..+.   +++||||+||++|||||++|++  |+|+|+|++|++|||+ |+|||..+..  ++++++|++++++.
T Consensus       167 ~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~-a~td~~~~~~--~~~~~~p~v~~~~~  243 (328)
T 1i6k_A          167 ELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIR--YDKEAKPGISNLLN  243 (328)
T ss_dssp             SCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH-CCCCSSCCCC--CBTTTBHHHHHHHH
T ss_pred             cccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHh-cCCCCccccc--cCCCCCcchhhHHH
Confidence              45676554   6999999998889999999866  9999999999999999 9999965432  34567899999999


Q ss_pred             hhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHhhhccc
Q 022791          223 YLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR  285 (292)
Q Consensus       223 ~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~-~l~~~l~~~  285 (292)
                      |+++|  +++++++|+++|. | ++|+++|+.||+.|+++|+|||+||+++.++ .|+++|..+
T Consensus       244 ~~~~~--~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~il~~g  303 (328)
T 1i6k_A          244 IYSTL--SGQSIEELERQYE-G-KGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEG  303 (328)
T ss_dssp             HHHHH--HCCCHHHHHHHTT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHH
T ss_pred             HHHHC--CchhHHHHHHHHc-C-CCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChhHHHHHHHH
Confidence            99999  5678999999999 7 8999999999999999999999999999976 599988765

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}

Probab=100.00  E-value=5.4e-63  Score=463.45  Aligned_cols=263  Identities=20%  Similarity=0.254  Sum_probs=229.7

Q ss_pred             hh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHHH
Q 022791            4 KY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK   74 (292)
Q Consensus         4 ~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~   74 (292)
                      +|  ||++ |+.++++||||||+|+++.+++.+++++++++++|+|||+||+|++||.||+|++|    |.+.   ++.+
T Consensus        36 ~~~~lQ~~-G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~if~qS~~~~~~el~~~l~~~~~v~~  114 (340)
T 2g36_A           36 NWVKLQEE-GNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSR  114 (340)
T ss_dssp             HHHHHHHT-TCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHC-CCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEECCchHHHHHHHHHHHccCCHHH
Confidence            55  9995 89999999999999985588999999999999999999999999999999999976    2233   4899


Q ss_pred             hhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC----
Q 022791           75 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY----  150 (292)
Q Consensus        75 l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~----  150 (292)
                      |.|++++++.+.+.+..++.++|+|+||+||||        |||.|+++   +||||.||+||+++|||+|+|||+    
T Consensus       115 l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAa--------Dil~~~~~---~vpvG~DQ~~hi~l~rdia~r~n~~yg~  183 (340)
T 2g36_A          115 LERVPTYKEIKSELNYKDLSTAGFLIYPVLQAA--------DILIYKAE---GVPVGEDQVYHIELTREIARRFNYLYDE  183 (340)
T ss_dssp             HHTCHHHHTC-------CCCSHHHHTHHHHHHH--------HHHTTTCS---EEEECGGGHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHhHHHHhHHHHhccCCCCChHHhhhHHHHHh--------hHHHhCCC---EEEcccchHHHHHHHHHHHHHhhhhccc
Confidence            999999998443443346789999999999999        99999995   899999999999999999999973    


Q ss_pred             --CCccch--hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhh
Q 022791          151 --HKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF  226 (292)
Q Consensus       151 --~~p~~l--~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~  226 (292)
                        ++|..+  ++++||||+|  .|||||++| +|+|+|||++|++||++ |+||+..   +++..+++|++++++.|+++
T Consensus       184 ~f~~P~~~~~~~~~l~gldG--~KMSKS~~n-~I~L~dsp~~i~~Ki~~-a~td~~~---~~~~~~~~p~~~~v~~~~~~  256 (340)
T 2g36_A          184 VFPEPEAILSRVPKLPGTDG--RKMSKSYGN-IINLEISEKELEQTILR-MMTDPAR---VRRSDPGNPENCPVWKYHQA  256 (340)
T ss_dssp             CCCCCEEEECCSCCCCCTTS--SCCCGGGTC-CCBTTCCHHHHHHHHHT-CCCCTTC---SSTTSCCCGGGCHHHHHHHH
T ss_pred             ccCCchhhhccccccCCCCc--cccCCCCCC-eEeeeCCHHHHHHHHHh-CCCCccc---ccccCCCCCchhHHHHHHHH
Confidence              567643  4799999998  499999986 89999999999999999 9999865   23456799999999999999


Q ss_pred             hccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791          227 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  285 (292)
Q Consensus       227 ~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~  285 (292)
                      |+.+.+++++|+++|.+|+++++++|+.||+.|+++|+|||+||+++.++  +|+++|..+
T Consensus       257 f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~~il~~g  317 (340)
T 2g36_A          257 FDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPHYVDDVIMEG  317 (340)
T ss_dssp             TTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred             HCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            97556778999999999989999999999999999999999999999987  899999865

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*

Probab=100.00  E-value=5.1e-62  Score=458.63  Aligned_cols=265  Identities=24%  Similarity=0.285  Sum_probs=236.2

Q ss_pred             chhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hH
Q 022791            2 FTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NM   72 (292)
Q Consensus         2 ~~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~   72 (292)
                      +.+|  ||++  +.++++||||||+++++.+++++++++++++++|+|||+||+|++||.||+|++|    |.+.   .+
T Consensus        44 l~~~~~lQ~~--~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~~~~el~~~l~~~~~v  121 (351)
T 1yi8_B           44 LQNRVRLQDE--AELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTV  121 (351)
T ss_dssp             HHHHHHHTSS--SEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEEEEGGGCTHHHHHHHHHHTTSBH
T ss_pred             HHHHHHHHHh--CCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEEcCchhhHHHHHHHHhccCCH
Confidence            3578  9985  5678888999999986699999999999999999999999999999999999976    2233   48


Q ss_pred             HHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC---
Q 022791           73 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG---  149 (292)
Q Consensus        73 ~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n---  149 (292)
                      .+|.|++|+++..+..|+.++.++|+|+||+||||        |||.|+++   +||||.||+||++++|++|+|||   
T Consensus       122 ~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAa--------Dil~~~~~---~vpvG~DQ~~hi~l~rdia~r~n~~y  190 (351)
T 1yi8_B          122 SHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAA--------DIAAFGAT---LVPVGDDQLPMLEQTREIVRRFNALY  190 (351)
T ss_dssp             HHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHH--------HHHHHTCS---EEEECGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHh--------hHHhcCCC---EEEecCCcHHHHHHHHHHHHHHHhhc
Confidence            99999999999887666667889999999999999        99999985   89999999999999999999987   


Q ss_pred             ---CCCccch--hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhh
Q 022791          150 ---YHKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL  224 (292)
Q Consensus       150 ---~~~p~~l--~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l  224 (292)
                         +++|..+  .+++||||+| ++|||||++| +|+|+|+|++|++||++ |+||+..   +++..++||+.++++.|+
T Consensus       191 g~~f~~P~~~~~~~~~l~~ldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~~~---~~~~~~~~~~~~~~~~~l  264 (351)
T 1yi8_B          191 APVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGDSADEVARKVMG-MYTDPGH---LRASDPGRVEGNPVFTFL  264 (351)
T ss_dssp             CSCSCCCEEEECSSCSCCCTTS-SSCCCTTTTC-CCBTTCCHHHHHHHHHT-CCCCTTC---CSTTSCCCCTTCTTHHHH
T ss_pred             ccccCCCeeeeecCccccCCCC-ccccCCCCCC-eecCCCCHHHHHHHHHh-cCCCccc---ccccCCCCCccchHHHHH
Confidence               3677654  3799999998 4699999998 99999999999999999 9999863   235668899999999999


Q ss_pred             hhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791          225 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  285 (292)
Q Consensus       225 ~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~  285 (292)
                      .+|+.+.+++++|+++|.+|+++|+++|+.||+.|+++|+|+|+||+++.++  +|+++|..+
T Consensus       265 ~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~l~~il~~G  327 (351)
T 1yi8_B          265 DAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEG  327 (351)
T ss_dssp             HHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9997667778999999999889999999999999999999999999999986  899999865

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=2.6e-61  Score=451.73  Aligned_cols=261  Identities=20%  Similarity=0.222  Sum_probs=223.0

Q ss_pred             hhh--HHhhcC-cceEEEeeccccccccc-cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---h
Q 022791            3 TKY--LQDAFK-VPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---N   71 (292)
Q Consensus         3 ~~~--lQ~~~g-~~~~I~iaD~hA~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~   71 (292)
                      .+|  ||++ | +.++|+||||||+++++ .+++.+++++++++++|+|||+||+|++||.||+|++|    |.+.   +
T Consensus        24 ~~~~~lQ~~-G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~~~~el~~~l~~~~~  102 (337)
T 2el7_A           24 KQWVAIGEK-LGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTP  102 (337)
T ss_dssp             HHHHHHHHH-HGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGSTHHHHHHHHHHHTSB
T ss_pred             HHHHHHHhc-CCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEEEEcCcchhhHHHHHHHHccCC
Confidence            356  7996 7 88999999999999853 79999999999999999999999999999999999976    3333   3


Q ss_pred             HHHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC--
Q 022791           72 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--  149 (292)
Q Consensus        72 ~~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n--  149 (292)
                      +.+|.|++|+++..+.   .++.++|+|+||+||||        ||+.|+++   +||||.||+||++++||+|+|||  
T Consensus       103 ~~~l~r~~~~k~r~~~---~~~~~~g~f~YPvLQaa--------Dil~~~~~---lvp~G~DQ~~~i~l~rdla~r~n~~  168 (337)
T 2el7_A          103 LGDLTRMTQFKDKASK---QETVWSGLLMYPVLQAA--------DILIYKAD---TVPVGEDQVQHIELTREIARRFNHL  168 (337)
T ss_dssp             HHHHHTSHHHHHHTTS---SSCCBHHHHHHHHHHHH--------HHHHTTCC---EEECCGGGCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHhcc---CCCCChHHHHhHHHHHh--------hHHhhCCc---EEEcccchHHHHHHHHHHHHHHHhh
Confidence            7899999999886532   46789999999999999        99999985   89999999999999999999986  


Q ss_pred             ----CCCccchhc---cccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccch
Q 022791          150 ----YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK  222 (292)
Q Consensus       150 ----~~~p~~l~~---~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~  222 (292)
                          +++|..+++   ++||||+| ++|||||++| +|+|+|+|++|++||++ |+||+..+.+   ..+++|++++++.
T Consensus       169 ~g~~f~~P~~~~~~~~p~l~gldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~~~~~~---~~~~~p~~~~v~~  242 (337)
T 2el7_A          169 FGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLLEPEESIWQKIQH-LPDDPQRIRL---SDPGDPERTILFT  242 (337)
T ss_dssp             HSSCCCCCEEECCTTSCCCBCTTS-SSBCCTTTTC-CCBSSSCHHHHHHHHHT-CCCCC----------------CHHHH
T ss_pred             cCcccCCCeeecccccccccCCCC-ccccCCCCCC-eeeCcCCHHHHHHHHHh-CCCCCccccc---cCCCCCchhhHHH
Confidence                477877664   89999999 6899999998 99999999999999999 9999976543   3567899999999


Q ss_pred             hhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791          223 YLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  285 (292)
Q Consensus       223 ~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~  285 (292)
                      |+++|+. .+++++|+++|.+|+++++++|+.||+.|+++|+|+|++|+++.++  +|+++|..+
T Consensus       243 ~~~~~t~-~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~il~~G  306 (337)
T 2el7_A          243 YLSYFAP-KDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDALLEG  306 (337)
T ss_dssp             HHHHHSC-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHcCC-hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHHHHHH
Confidence            9999943 3599999999999889999999999999999999999999999986  899999765

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}

Probab=100.00  E-value=2.8e-60  Score=449.61  Aligned_cols=259  Identities=16%  Similarity=0.247  Sum_probs=222.1

Q ss_pred             hhhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCccc-ch--hhhHhHHHhhh
Q 022791            3 TKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG--AFYKNMVKVAK   77 (292)
Q Consensus         3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~-~~--~~~~~~~~l~r   77 (292)
                      ++|||++ ||.++|+||||||+++++  .++++++++++++++.|+|||+||+|++||.||+|+ +|  .+|..+.++++
T Consensus        81 ~~~lQ~~-G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~  159 (373)
T 3vgj_A           81 VNKLTSN-GCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISR  159 (373)
T ss_dssp             HHHHHTT-TCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHT
T ss_pred             HHHHHHC-CCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHc
Confidence            4679995 999999999999999864  799999999999999999999999999999999998 55  47777777888


Q ss_pred             heeecceeecc---ccC--CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCC-
Q 022791           78 CVTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-  151 (292)
Q Consensus        78 ~~t~~~~~~~~---g~~--~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~-  151 (292)
                      ++|++++.++.   ++.  ++.++|+|+||+||||        ||+.|++|   +||||.||+||+++|||+|+|||+. 
T Consensus       160 ~~tv~rm~~~~~~~~r~~~~~~~~g~f~YPlLQaa--------Dil~l~ad---~vpgG~DQ~~~l~l~Rdla~r~~~~~  228 (373)
T 3vgj_A          160 SFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCA--------DIFFLNVD---ICQLGIDQRKVNMLAREYCDIKKIKK  228 (373)
T ss_dssp             TSBHHHHHTTGGGGTCCTTSCCBTHHHHHHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHHTCSC
T ss_pred             cCcHHHHHhhhHHHhhhccCCCChHHHHHHHHHHh--------cccccCCc---EEEcchhhHHHHHHHHHHHHHhCCCC
Confidence            88877776642   222  4689999999999999        99999997   7999999999999999999999986 


Q ss_pred             CccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCcccc----ccchhhhhh
Q 022791          152 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD----IPVKYLSFF  227 (292)
Q Consensus       152 ~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~----~~~~~l~~~  227 (292)
                      +|.++++++||||+++++|||||+|+|+|+|+|+|++|++|||+ ||||++.       .++||.++    ++|+++..|
T Consensus       229 ~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D~p~~i~~KI~k-A~td~~~-------~~~n~~~~~~~~~~f~~~~~f  300 (373)
T 3vgj_A          229 KPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSESDVNRKIKK-AYCPPNV-------IENNPIYAYAKSIIFPSYNEF  300 (373)
T ss_dssp             CCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTCCHHHHHHHHHH-SCCCTTC-------CTTCHHHHHHHHTHHHHHSSE
T ss_pred             CceEEeCCeeecCCCCCCCCcCCCCCCeeecCCCHHHHHHHHHh-CcCCCCC-------CCCCcchhhhhhhhhhhhhhh
Confidence            78888999999994445799999998899999999999999999 9999864       26788765    355666555


Q ss_pred             cc----------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhh
Q 022791          228 LE----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAF  281 (292)
Q Consensus       228 ~~----------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~  281 (292)
                      ..          +++++++++++|.+|+++|++||++||++|+++|+|||++|++..+.  +++++
T Consensus       301 ~~~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~lae~i~~~l~Pire~~~~~~~~~~~l~~v  366 (373)
T 3vgj_A          301 NLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEI  366 (373)
T ss_dssp             EECCCGGGTCCEEECCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             cccccccccCCcCcccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence            21          24689999999999999999999999999999999999999987643  45554

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}

Probab=100.00  E-value=1.1e-58  Score=437.92  Aligned_cols=248  Identities=23%  Similarity=0.316  Sum_probs=214.9

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch-hhhHhHHHhhhh
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKC   78 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~   78 (292)
                      .++|||++ |+.++|+||||||+++++  .+++.+++++++++++|+|||+||+|++||.||+|++| .||..+.++++.
T Consensus        58 ~~~~lQ~~-G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~  136 (364)
T 2cya_A           58 KVKDLVEA-GVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKR  136 (364)
T ss_dssp             HHHHHHHT-TCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHC-CCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhcchHHHHHHHHHHCc
Confidence            35679995 999999999999999864  89999999999999999999999999999999999876 567766677777


Q ss_pred             eeecceeecc---cc---CCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCC
Q 022791           79 VTYNKVVGIF---GF---TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK  152 (292)
Q Consensus        79 ~t~~~~~~~~---g~---~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~  152 (292)
                      +|++++.+..   ++   ..+.++|+|+||+||||        ||+.|++|   +||||.||+||+++||++|+|||+++
T Consensus       137 ~t~~~l~r~~~~k~r~~~~~~i~~g~~~YP~LQaa--------Dil~~~~~---~v~~G~DQ~~~~~l~rdla~r~~~~~  205 (364)
T 2cya_A          137 ASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVS--------DIFYMDLD---IALGGMDQRKAHMLARDVAEKLGRKK  205 (364)
T ss_dssp             SCHHHHHTTC------CCGGGSCTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHHTTTTCCC
T ss_pred             CcHHHHHcCchhhhhhcCCCCccchhhhhHHHHHh--------hHHhcCCC---EEeccchHHHHHHHHHHHHHHcCCCC
Confidence            7776665542   22   12467999999999999        99999996   89999999999999999999999999


Q ss_pred             ccchhccccccccC---------------CcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccc
Q 022791          153 PALIESSFFPALQG---------------ETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV  217 (292)
Q Consensus       153 p~~l~~~~lpgL~g---------------~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~  217 (292)
                      |.++++++||||+|               |++|||||+++++|+|+|+|++|++||++ |+||++.           ++.
T Consensus       206 p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d~p~~i~~Ki~~-a~td~~~-----------~~~  273 (364)
T 2cya_A          206 PVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDSDDDIRRKIRK-AYCPAKQ-----------VQG  273 (364)
T ss_dssp             CEEEEECCCBCSSCC----------------CBCCSSSGGGSCBTTCCHHHHHHHHHT-SCCCTTC-----------CTT
T ss_pred             ceeeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccCCHHHHHHHHHh-CcCCCCC-----------CCC
Confidence            99999999999997               56899999988899999999999999999 9999754           334


Q ss_pred             cccchhhhhhcc-------------------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022791          218 DIPVKYLSFFLE-------------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV  273 (292)
Q Consensus       218 ~~~~~~l~~~~~-------------------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~  273 (292)
                      +.++.|+++|+.                   +.+++++|+++|.+|+++|+++|+.||+.|+++|+|+|++|++.
T Consensus       274 ~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~~  348 (364)
T 2cya_A          274 NPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLGD  348 (364)
T ss_dssp             CHHHHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CcHHHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            556777777541                   23589999999999989999999999999999999999999953

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.3e-58  Score=438.81  Aligned_cols=256  Identities=21%  Similarity=0.316  Sum_probs=220.3

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc--cCHHHHHHHH-Hhch----hhhhhccCCCCceeEecCCcccch-hhhHhHH
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLA-RENA----KDIIACGFDVTKTFIFSDFDYVGG-AFYKNMV   73 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~-~~~~----~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~   73 (292)
                      .++|||++ |+.++|+||||||+++++  .+++++++++ ++++    ++|+|||+||+|++||.||+|++| .+|..+.
T Consensus        57 ~~~~lQ~~-G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~  135 (375)
T 2cyc_A           57 KIADFQKA-GIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVI  135 (375)
T ss_dssp             HHHHHHHT-TCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHH
T ss_pred             HHHHHHHC-CCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhhhhhHHHHHHH
Confidence            35679996 999999999999999864  6999999999 8888    899999999999999999999987 4777777


Q ss_pred             Hhhhheeecceeecc---cc--CCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCccc
Q 022791           74 KVAKCVTYNKVVGIF---GF--TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI  148 (292)
Q Consensus        74 ~l~r~~t~~~~~~~~---g~--~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~  148 (292)
                      .+++.++++++.++.   ++  .++.++|+|+||+||||        |||.|++|   +||||.||+||+++|||+|+||
T Consensus       136 ~~~~~~~~~~m~~~~~~k~r~~~~~i~~g~f~YP~LQaa--------Dil~~~~~---~vp~G~DQ~~~i~l~rdla~r~  204 (375)
T 2cyc_A          136 DISKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVA--------DIFYQGVT---IAHAGMDQRKAHVIAIEVAQKL  204 (375)
T ss_dssp             HHHTTSBHHHHHHTGGGGTCCCCTTCBTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGC
T ss_pred             HHhceeEHHHHhccchhhhhccCCCCChHHHHHHHHHHH--------HHHHhCCC---eecccchHHHHHHHHHHHHHHh
Confidence            777777777776543   22  23578999999999999        99999996   7999999999999999999999


Q ss_pred             CC--------C-CccchhccccccccCC----------------cccccccCCCceeEecCCHHHHHHHhhhccccCCcc
Q 022791          149 GY--------H-KPALIESSFFPALQGE----------------TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE  203 (292)
Q Consensus       149 n~--------~-~p~~l~~~~lpgL~g~----------------~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~  203 (292)
                      |+        . +|.++++++||||+||                ++|||||+|+++|+|+|+|++|++||++ |+|||. 
T Consensus       205 n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI~~-A~t~~~-  282 (375)
T 2cyc_A          205 RYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAR-  282 (375)
T ss_dssp             SSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHHHH-SCCCTT-
T ss_pred             CCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHHHH-hcCCCC-
Confidence            98        4 7888889999999997                5899999988899999999999999999 999974 


Q ss_pred             cHHHHHHhCCCccccccchhhhhhcc-------------------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHH
Q 022791          204 SVELHRKLGANLEVDIPVKYLSFFLE-------------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE  264 (292)
Q Consensus       204 ~~~~~~~~~~~p~~~~~~~~l~~~~~-------------------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~  264 (292)
                                +++.++++.|+++|+.                   +++++++|+++|.+|+++|+++|+.||+.|+++|+
T Consensus       283 ----------~~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~  352 (375)
T 2cyc_A          283 ----------EVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLE  352 (375)
T ss_dssp             ----------CCSSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTH
T ss_pred             ----------CCCCChHHHHHHHHhcCCCCcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence                      3445666677776641                   14679999999999989999999999999999999


Q ss_pred             HHHHHHhhhhH--HHHHhh
Q 022791          265 RHQVARAAVTD--EMVDAF  281 (292)
Q Consensus       265 pir~~~~~~~~--~~l~~~  281 (292)
                      |+|++|++..+  +.++++
T Consensus       353 pir~~~~~~~~~~~~~~~~  371 (375)
T 2cyc_A          353 PIRRYFEKHPEPLELMRSV  371 (375)
T ss_dssp             HHHHHHHHCCHHHHHHHHC
T ss_pred             HHHHHHHhChhHHHHHHhc
Confidence            99999996532  145444

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}

Probab=100.00  E-value=7.2e-58  Score=430.13  Aligned_cols=248  Identities=19%  Similarity=0.305  Sum_probs=202.2

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcc-cch-hhhHhHHHhhh
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG-AFYKNMVKVAK   77 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~-~~~-~~~~~~~~l~r   77 (292)
                      .++|||++ |+.++++||||||+++++  .+++++++++++++++|+|||+||+|++||.||+| ++| .+|..+..+++
T Consensus        64 ~~~~lQ~~-G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~~~~~~~~~v~~  142 (348)
T 2j5b_A           64 NTNNMIEC-GGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAE  142 (348)
T ss_dssp             HHHHHHHT-TEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHc-CCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhhHHHHHHHHHHh
Confidence            45679995 999999999999999865  58999999999999999999999999999999998 444 66766666666


Q ss_pred             heeecceeec---ccc--CCCCccccccCCccccCCCCCCCCCccccC---CCcccccccccccCCCccccccccCcccC
Q 022791           78 CVTYNKVVGI---FGF--TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG---KDHLRCLIPCAIDQDPYFRMTRDVAPRIG  149 (292)
Q Consensus        78 ~~t~~~~~~~---~g~--~~~~~~g~l~YP~lqaad~~~~~~~Dil~~---~ad~~~~vpvG~DQ~~h~elaR~ia~r~n  149 (292)
                      +++++++.+.   .++  .++.++|+|+||+||||        ||+.+   ++|   +||||.||+||+++||++|+|||
T Consensus       143 ~~~~~~m~~~~~~~~r~~~~~i~~g~f~YP~lQaa--------Dil~~~~~~~~---~~~~G~DQ~~~i~l~Rdia~r~~  211 (348)
T 2j5b_A          143 FSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAA--------DVFELVPEGID---ICQLGIDQRKVNMLAIEYANDRG  211 (348)
T ss_dssp             HHHHHHHTC-----------------CCHHHHHHH--------HHHHSSTTCCS---EECCBGGGHHHHHHHHHHHHHTT
T ss_pred             heeHHHHHhhhhhhhhhccCCcChHHHhhHHHHHH--------HHHHHhcCCCc---EEEeccChHHHHHHHHHHHHHhC
Confidence            6666655542   222  23568999999999999        99999   885   79999999999999999999999


Q ss_pred             CCCccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc-
Q 022791          150 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-  228 (292)
Q Consensus       150 ~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~-  228 (292)
                      +..|.++++++||||+|+++|||||+|+++|+|+|+|++|++|||+ |+|||..           ++ ++++.|+.++. 
T Consensus       212 ~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d~p~~i~kKI~k-a~td~~~-----------~~-~~~~~~~~~~~~  278 (348)
T 2j5b_A          212 LKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDTEQEVSEKISR-AYCTDET-----------FD-NPIFEYIKYLLL  278 (348)
T ss_dssp             CCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTCCHHHHHHHHHH-SCCCSSS-----------TT-CHHHHHHHHTHH
T ss_pred             CCCceeecCccccCCCCcccccccCCCCCeEeecCCHHHHHHHHhc-ccCCCCC-----------CC-CchHhHHHHhhh
Confidence            9989988899999997766899999988899999999999999999 9999853           23 33344443321 


Q ss_pred             ----------cChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 022791          229 ----------EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE  276 (292)
Q Consensus       229 ----------~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~  276 (292)
                                .+++++++|+++|. | ++|+++|+.||+.|+++|+|||+++++....
T Consensus       279 ~~~~~~~i~~~~~~~~~el~~~~~-~-~~~~~~K~~la~~l~~~l~pir~~~~~~~~~  334 (348)
T 2j5b_A          279 RWFGTLNLCGKIYTDIESIQEDFS-S-MNKRELKTDVANYINTIIDLVREHFKKPELS  334 (348)
T ss_dssp             HHHSCEEETTEEESSHHHHHHHHT-T-SCHHHHHHHHHHHHHHHHHHHHHHTTSGGGH
T ss_pred             hhhcccccccCCcchHHHHHHHHc-c-cCHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence                      13567999999999 5 8999999999999999999999999876433

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=100.00  E-value=2.1e-57  Score=457.91  Aligned_cols=268  Identities=19%  Similarity=0.271  Sum_probs=228.4

Q ss_pred             hhhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcc-cch--hhhHhHHHhhh
Q 022791            3 TKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG--AFYKNMVKVAK   77 (292)
Q Consensus         3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~-~~~--~~~~~~~~l~r   77 (292)
                      ++|||++ |+.++|+||||||+++++  .++++++++++++++.|+|||+||+|++||.||+| ++|  .+|..+.++++
T Consensus        65 ~~~lQ~~-G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~  143 (690)
T 3p0j_A           65 VNKCTAA-GCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGR  143 (690)
T ss_dssp             HHHHHHT-TEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHC-CCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHh
Confidence            4579995 999999999999999864  78999999999999999999999999999999985 555  57777888888


Q ss_pred             heeecceeecc---ccC-CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCC-C
Q 022791           78 CVTYNKVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-K  152 (292)
Q Consensus        78 ~~t~~~~~~~~---g~~-~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~-~  152 (292)
                      .+|++++.++.   |+. .+.++|+|+||+||||        ||+.|++|   +||||.||+||+++|||+|+|||+. +
T Consensus       144 ~~tv~~m~~~~~~~~r~~~~i~~g~f~YPlLQAa--------Dil~~~ad---~vpvG~DQ~~~l~l~Rdla~r~n~~~~  212 (690)
T 3p0j_A          144 QNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCC--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLK  212 (690)
T ss_dssp             TSCHHHHHTTC-------CCCCCSCSSHHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHTTCCCC
T ss_pred             hCCHHHHHhhhhhhhhccCCCchhhHhhHHHHHH--------HHHhhCCC---EEeccccHHHHHHHHHHHHHHhCCCCC
Confidence            88888777642   322 2379999999999999        99999996   7999999999999999999999985 6


Q ss_pred             ccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcc-cHHHHHHhCCC---ccccccchhhhhhc
Q 022791          153 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE-SVELHRKLGAN---LEVDIPVKYLSFFL  228 (292)
Q Consensus       153 p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~-~~~~~~~~~~~---p~~~~~~~~l~~~~  228 (292)
                      |.++++++||||+++++|||||+++|+|+|+|+|++|++|||+ |+||++. +..+++++|++   ++.++++.|+.++.
T Consensus       213 p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~D~p~~i~kKI~~-A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~  291 (690)
T 3p0j_A          213 PVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVV  291 (690)
T ss_dssp             CEEEEBCCCCCSSTTCSSCBTTBGGGSCBTTCCHHHHHHHHHT-SCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTT
T ss_pred             ceEeecCeeecCCCCCcCCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCcccccccccCCCCcccCCCCchHHHHHHHhh
Confidence            8888899999995445799999998899999999999999999 9999864 11223345544   67889999999763


Q ss_pred             c------------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhc
Q 022791          229 E------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMA  283 (292)
Q Consensus       229 ~------------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~  283 (292)
                      .            +++++++++++|++|+++|++||+.||+.|+++|+|||+||++..++  +++++..
T Consensus       292 ~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae~i~~~L~Pirer~~~~~~~~~~l~~v~~  360 (690)
T 3p0j_A          292 YARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKS  360 (690)
T ss_dssp             TTSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             cccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence            1            35689999999999999999999999999999999999999988765  6776654

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}

Probab=100.00  E-value=3.5e-55  Score=408.57  Aligned_cols=243  Identities=23%  Similarity=0.333  Sum_probs=213.8

Q ss_pred             hhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch-hhhHhHHHhhhheee
Q 022791            3 TKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTY   81 (292)
Q Consensus         3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t~   81 (292)
                      .+|||++ |+.++|+||||||++.+..+++++++++++++++|+|||+||+|+.||.||+|+.+ .++..+..+++.+|+
T Consensus        56 ~~~lq~~-g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~  134 (323)
T 2cyb_A           56 LMDLQEA-GFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTL  134 (323)
T ss_dssp             HHHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBH
T ss_pred             HHHHHHC-CCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCH
Confidence            4669995 99999999999999986459999999999999999999999999999999999754 667777778888888


Q ss_pred             cceeecc---ccC-CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchh
Q 022791           82 NKVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIE  157 (292)
Q Consensus        82 ~~~~~~~---g~~-~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~  157 (292)
                      +++.+..   ++. ++.++|+|+||+||||        |++.++++   +||||.||++|++++|++|+|||+++|..++
T Consensus       135 ~~l~~~~~~~~~~~~~~~~g~~~YP~lqaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~  203 (323)
T 2cyb_A          135 NRARRSMDEVSRRKEDPMVSQMIYPLMQAL--------DIAHLGVD---LAVGGIDQRKIHMLARENLPRLGYSSPVCLH  203 (323)
T ss_dssp             HHHHHHTTTTCSCSSSCBTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEE
T ss_pred             HHHhccchhhccccCCCCchhhhhHHHHHH--------HHHhcCCC---EEEechhhHHHHHHHHHHHHhcCCCCceEEe
Confidence            7776643   332 3458999999999999        99999985   8999999999999999999999999999999


Q ss_pred             ccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc---------
Q 022791          158 SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL---------  228 (292)
Q Consensus       158 ~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~---------  228 (292)
                      +++||||+|  +||||| ++++|+|+|+|++|++||++ |+||++.           ++.++++.|+++|.         
T Consensus       204 ~pll~~l~G--~KMSKS-~~n~I~l~d~p~~i~~Ki~~-a~td~~~-----------~~~~~~~~~~~~~~~p~~~~~~i  268 (323)
T 2cyb_A          204 TPILVGLDG--QKMSSS-KGNYISVRDPPEEVERKIRK-AYCPAGV-----------VEENPILDIAKYHILPRFGKIVV  268 (323)
T ss_dssp             ECCCBCTTS--SBCCTT-TTCSCBTTCCHHHHHHHHHT-SCCCTTC-----------CTTCHHHHHHHHTHHHHHSCEEE
T ss_pred             cCcccCCCC--CcccCC-cCceeCCCCCHHHHHHHHHh-cCCCCCC-----------CCcChHHHHHHHHhccccCceeE
Confidence            999999998  799999 56799999999999999999 9998753           44577788888764         


Q ss_pred             -------c--ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q 022791          229 -------E--DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA  272 (292)
Q Consensus       229 -------~--~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~  272 (292)
                             .  +++++++++++|.+|+++|++||+.||+.|+++|+|||+||++
T Consensus       269 ~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~~l~pir~~~~~  321 (323)
T 2cyb_A          269 ERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNMLLEDARKRLGV  321 (323)
T ss_dssp             CCCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             echhhcCCCCCcccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                   1  3458999999999999999999999999999999999999976

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*

Probab=100.00  E-value=2.5e-53  Score=394.40  Aligned_cols=238  Identities=19%  Similarity=0.229  Sum_probs=207.0

Q ss_pred             chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch-hhhHhHHHhhhhee
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVT   80 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t   80 (292)
                      .++|||++ |+.++|+|||+||++++..+++++++++++++++|+|||+|   +.++.||+|+++ .+|..+..+++.+|
T Consensus        51 ~~~~lQ~~-g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~~~~qs~~~~~~~~~~~~~~l~~~~t  126 (314)
T 2zp1_A           51 KMIDLQNA-GFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AKYVYGSEFQLDKDYTLNVYRLALKTT  126 (314)
T ss_dssp             HHHHHHHT-TEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CEEEEGGGTTTSHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHC-CCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eEEEECChhhcchHHHHHHHHHHCcCc
Confidence            45779995 99999999999999986469999999999999999999999   778889999875 56777777777777


Q ss_pred             ecceeecc---ccC-CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccch
Q 022791           81 YNKVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALI  156 (292)
Q Consensus        81 ~~~~~~~~---g~~-~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l  156 (292)
                      ++++.+..   ++. ++.++|+|+||+||||        ||+.++++   +||||.||++|++++|++++    ++|.++
T Consensus       127 ~~~l~~~~~~~~~~~~~~~~g~~~YP~LQaa--------Dil~~~~~---~v~~G~DQ~~~~~l~R~i~~----~~~~~~  191 (314)
T 2zp1_A          127 LKRARRSMELIAREDENPKVAEVIYPIMQVN--------TSHYLGVD---VAVGGMEQRKIHMLARELLP----KKVVCI  191 (314)
T ss_dssp             HHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHHSS----SCCEEE
T ss_pred             HHHHhccchhhhhccCCCCchhhhhHHHHHH--------hHHhhCCC---EEEcChhHHHHHHHHHHhcC----CCcEEe
Confidence            77766542   221 2348999999999999        99999985   89999999999999999997    788888


Q ss_pred             hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc--------
Q 022791          157 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL--------  228 (292)
Q Consensus       157 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~--------  228 (292)
                      ++++||||+| ++||||| ++|+|+|+|+|++|++|||+ |+|||+.           ++.+++|+|+.+|.        
T Consensus       192 ~~~~l~~l~G-~~KMSKS-~~~~I~L~d~~~~i~~KI~~-a~td~~~-----------~~~~~~~~~~~~~~~~~~~i~r  257 (314)
T 2zp1_A          192 HNPVLTGLDG-EGKMSSS-KGNFIAVDDSPEEIRAKIKK-AYCPAGV-----------VEGNPIMEIAKYFLEYPLTIKR  257 (314)
T ss_dssp             EECCCBCTTS-SSBCCTT-TTCSCBTTCCHHHHHHHHHH-SCCCTTC-----------CTTCHHHHHHHHHCCSSEEECC
T ss_pred             eccccccCCc-ccccCCC-CcceecCCCCHHHHHHHHHh-CCCCCCC-----------CCCCcHHHHHHHHhcCCcceee
Confidence            9999999996 4799999 67799999999999999999 9999754           34577888888875        


Q ss_pred             -------cChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q 022791          229 -------EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA  272 (292)
Q Consensus       229 -------~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~  272 (292)
                             .++.++++|+++|.+|+++|+++|+.||+.|+++|+|+|++++.
T Consensus       258 ~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l~p~r~~~~~  308 (314)
T 2zp1_A          258 PEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKILEPIRKRLLE  308 (314)
T ss_dssp             CGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                   14568999999999999999999999999999999999999975

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*

Probab=100.00  E-value=3.6e-53  Score=401.56  Aligned_cols=248  Identities=20%  Similarity=0.226  Sum_probs=200.2

Q ss_pred             chhhHHhhcCcceEEEeeccccccccccCHHHHHHHH---Hhc-hh-hhhhccCCCCceeEecCCccc-chhhhHhHHHh
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLA---REN-AK-DIIACGFDVTKTFIFSDFDYV-GGAFYKNMVKV   75 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~---~~~-~~-~~lA~Gldp~k~~i~~qs~~~-~~~~~~~~~~l   75 (292)
                      +.+|+|++ |+.++++||||||+|+++.+++++.++.   .+. +. .++|||+||+++.||.||+|+ ...++..++++
T Consensus        58 ~~~~~~q~-g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l  136 (372)
T 1n3l_A           58 KIADFLKA-GCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRL  136 (372)
T ss_dssp             HHHHHHHT-TCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHH
T ss_pred             HHHHHHHC-CCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHH
Confidence            35667874 9999999999999997656666664444   332 44 468999999999999999995 34666677778


Q ss_pred             hhheeecceeec----cccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCC
Q 022791           76 AKCVTYNKVVGI----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH  151 (292)
Q Consensus        76 ~r~~t~~~~~~~----~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~  151 (292)
                      ++.+|+.+.++.    .++.++.++|+|+||+||||        ||+.|+++   +||||.||++|++++|++++|||++
T Consensus       137 ~~~~t~~~~~~~~~~v~~~~~~~~~g~~~YP~lQaa--------Dil~~~a~---~v~~G~DQ~~~~~l~rdl~~r~~~~  205 (372)
T 1n3l_A          137 SSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQAL--------DEEYLKVD---AQFGGIDQRKIFTFAEKYLPALGYS  205 (372)
T ss_dssp             HTTSCHHHHHHHTTTTSCCCSSCCHHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCC
T ss_pred             HhhCcHHHHHhchhhhhcccCCCcceeeecchHhhc--------cHHHhcCC---EEEcChhHHHHHHHHHHHHHHcCCC
Confidence            888888877764    24446789999999999999        99999995   8999999999999999999999999


Q ss_pred             CccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccc----cccchhhhhh
Q 022791          152 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV----DIPVKYLSFF  227 (292)
Q Consensus       152 ~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~----~~~~~~l~~~  227 (292)
                      +|..+++++||||+|  +|||||++|++|+|+|+|++|++|||+ |+|||+.+       +++|..    .++|++++.|
T Consensus       206 ~p~~l~~pll~gldG--~KMSKS~~ns~I~L~d~p~~i~kKi~~-A~td~~~~-------~d~~v~~~lk~~l~~~~~~f  275 (372)
T 1n3l_A          206 KRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLKK-AFCEPGNV-------ENNGVLSFIKHVLFPLKSEF  275 (372)
T ss_dssp             CCEEEEECCCCCSSC--C-------CCSCBTTCCHHHHHHHHHT-CCCCTTCC-------SSCHHHHHHHHTTGGGTTCE
T ss_pred             CCEEEecCccCCCCc--ccccCCCCCCeEeccCCHHHHHHHHHH-ccCCCCCC-------CcccHHHHHHHhhhhhhcce
Confidence            999999999999998  799999999899999999999999999 99998642       223221    2444555546


Q ss_pred             cc----------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 022791          228 LE----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA  271 (292)
Q Consensus       228 ~~----------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~  271 (292)
                      +.          +++++++|+++|.+|+++|+++|+.||+.|+++|+|+|++++
T Consensus       276 ~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~  329 (372)
T 1n3l_A          276 VILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN  329 (372)
T ss_dssp             EECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eecccccccCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence            42          456899999999999899999999999999999999999998

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-52  Score=396.35  Aligned_cols=259  Identities=19%  Similarity=0.169  Sum_probs=201.0

Q ss_pred             hhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHH----HhchhhhhhccCCCCceeEecCCcccc-hhhhHhHHHhh
Q 022791            3 TKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLA----RENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVA   76 (292)
Q Consensus         3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~----~~~~~~~lA~Gldp~k~~i~~qs~~~~-~~~~~~~~~l~   76 (292)
                      ..|+|+ .|+.++|+|+||||+|+++ .+.+.++.++    ..+.+.|+|||+||+++.||.||+|.. ..|+..++.++
T Consensus        63 ~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~  141 (394)
T 2dlc_X           63 LADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLS  141 (394)
T ss_dssp             HHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHHHh
Confidence            445776 4999999999999999754 6667777664    344457889999999999999999964 35666677788


Q ss_pred             hheeecceeecc----ccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCC
Q 022791           77 KCVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK  152 (292)
Q Consensus        77 r~~t~~~~~~~~----g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~  152 (292)
                      ..+|++++.+..    ++.++.++|+|+||+||||        ||+.++++   +||||.||++|++++|+++++||+++
T Consensus       142 ~~~t~~~l~r~~~~~~r~~~~~~~g~~~YP~lQaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdl~~r~~~~~  210 (394)
T 2dlc_X          142 NIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQAL--------DEQFLDVD---CQFGGVDQRKIFVLAEENLPSLGYKK  210 (394)
T ss_dssp             TTSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCC
T ss_pred             CcCcHHHHhcccHhhhcccCCccceeeechhHhhc--------cHhhhCCC---EEecCccHHHHHHHHHHHHHHcCCCC
Confidence            888887766431    2245678999999999999        99999986   79999999999999999999999999


Q ss_pred             ccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccH---------------HHHHHhCCCccc
Q 022791          153 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESV---------------ELHRKLGANLEV  217 (292)
Q Consensus       153 p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~---------------~~~~~~~~~p~~  217 (292)
                      |..+++++||||+| ++|||||++|++|+|+|+|++|++|||+ |+|||+.+.               +++++.+|++. 
T Consensus       211 p~~l~~pll~gl~~-G~KMSKS~~ns~I~L~D~p~~i~kKI~k-a~Td~~~~~d~~v~~y~k~~~~p~~~~~~~~g~~~-  287 (394)
T 2dlc_X          211 RAHLMNPMVPGLAQ-GGKMSASDPNSKIDLLEEPKQVKKKINS-AFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFE-  287 (394)
T ss_dssp             CEEEEECCCCCCC-----------CCSCBTTCCHHHHHHHHHH-SCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTTCCC-
T ss_pred             CEEEecccccCCCC-CCcCCCCCCCCEEeccCCHHHHHHHHHH-hcCCCCCCCcchHHHHHHhhhcchhhhcccCCCce-
Confidence            99999999999992 2899999998889999999999999999 999996531               11112222222 


Q ss_pred             cccchh------hhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhc
Q 022791          218 DIPVKY------LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMA  283 (292)
Q Consensus       218 ~~~~~~------l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~  283 (292)
                         |.+      +..+  +++++++|+++|.+|+++|+++|+.||+.|+++|+|+|+++++..  ..++++.
T Consensus       288 ---~~i~~~~~~~~~~--~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~~~~--~~~~~~~  352 (394)
T 2dlc_X          288 ---FFIDRPEKFGGPI--TYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNK--EFQEASE  352 (394)
T ss_dssp             ---EEECCCGGGSCCE--EESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHH
T ss_pred             ---EEEeccccccCcC--CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHCCH--HHHHHHh
Confidence               333      4444  457899999999998899999999999999999999999988543  3555554

>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*

Probab=100.00  E-value=6e-52  Score=386.28  Aligned_cols=236  Identities=15%  Similarity=0.138  Sum_probs=201.7

Q ss_pred             chhhHHhhcCcceEEEeecccccccccc---------CHHHHHHHH---HhchhhhhhccCCCCceeEecCCcccch---
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNL---------SVEESQRLA---RENAKDIIACGFDVTKTFIFSDFDYVGG---   66 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~---------~~~~i~~~~---~~~~~~~lA~Gldp~k~~i~~qs~~~~~---   66 (292)
                      .++|||++ |+.++++|||+||+++++.         +++++++|+   +++++.|+|||+||+|++||.||+|+.+   
T Consensus        57 ~~~~lQ~~-g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~  135 (322)
T 2yxn_A           57 CLKRFQQA-GHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNV  135 (322)
T ss_dssp             HHHHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCH
T ss_pred             HHHHHHHc-CCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcH
Confidence            46779995 9999999999999998652         899999999   8999999999999999999999999765   


Q ss_pred             -hhhHhHH---Hhhhheeecceeecccc-CCCCccccccCCccccCCCCCCCCCccccC----CCcccccccccccCCCc
Q 022791           67 -AFYKNMV---KVAKCVTYNKVVGIFGF-TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPY  137 (292)
Q Consensus        67 -~~~~~~~---~l~r~~t~~~~~~~~g~-~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h  137 (292)
                       +|+..++   .++|+.+...++.++++ .++.++|+|+||+||||        ||+.+    +++   +++||.||+||
T Consensus       136 l~~l~~~~~~~~v~~m~~~~~~k~r~~~~~~~is~g~f~YP~LQaa--------Dil~l~~~~~~~---v~~gG~DQ~~~  204 (322)
T 2yxn_A          136 LTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGY--------DFACLNKQYGVV---LCIGGSDQWGN  204 (322)
T ss_dssp             HHHHHHTGGGCCHHHHTTCHHHHHHHHCTTCCCCHHHHTHHHHHHH--------HHHHHHHHHCEE---EEEECTTCHHH
T ss_pred             HHHHHHHhccccHHHHhhhHHHHHHhccCCCCccchhhhHHHHHHH--------HHHHHhccCCce---EEecCchhHHH
Confidence             3443333   55666555555555543 34679999999999999        99999    875   67789999999


Q ss_pred             cccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecC---CHHHHHHHhhhccccCCcccHHHHHHhCCC
Q 022791          138 FRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGAN  214 (292)
Q Consensus       138 ~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~  214 (292)
                      +++|||+|+|||..+|..+.+|+|||++|  +|||||++| +|+|+|   +|+++++||++ +-                
T Consensus       205 i~l~rdla~r~n~~~~~~l~~pll~gldG--~KMSKS~~n-~I~L~d~~tsp~~~~~ki~~-~~----------------  264 (322)
T 2yxn_A          205 ITSGIDLTRRLHQNQVFGLTVPLITKADG--TKFGKTEGG-AVWLDPKKTSPYKFYQFWIN-TA----------------  264 (322)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCBCTTS--CBTTEETTE-ECBSSTTTSCHHHHHHHHHT-CC----------------
T ss_pred             HHHHHHHHHHhCCCCceeeccCccCCCCc--ccccCCCCC-eeeccCCCCCHHHHHHHHhC-CC----------------
Confidence            99999999999998888889999999998  699999997 999999   99999999999 51                


Q ss_pred             ccccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q 022791          215 LEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA  272 (292)
Q Consensus       215 p~~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~  272 (292)
                        .+.+++|+.+|+. +++++++++++|.+|. +++++|+.||+.|+++++|.++.++.
T Consensus       265 --d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~-~~~~~K~~La~~i~~~l~~~~~~~~a  320 (322)
T 2yxn_A          265 --DADVYRFLKFFTFMSIEEINALEEEDKNSG-KAPRAQYVLAEQVTRLVHGEEGLQAA  320 (322)
T ss_dssp             --HHHHHHHHHHHCCCCHHHHHHHHHHHHHHS-SCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --cccHHHHHHHHHcCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence              1345677777754 7889999999999886 99999999999999999999998775

>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*

Probab=100.00  E-value=1.4e-50  Score=389.42  Aligned_cols=244  Identities=17%  Similarity=0.142  Sum_probs=199.3

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHhchhhhhhccCC--CCceeEecCCcccchhhhH
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGGAFYK   70 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~~~~~~lA~Gld--p~k~~i~~qs~~~~~~~~~   70 (292)
                      .++|||++ |+.++++|||+||+++++         .+++++++|+..+.+.+. +|+|  |+|++||.||+|.++.++.
T Consensus        61 ~l~~lQ~~-G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~~~  138 (432)
T 1h3f_A           61 KMRQFQEL-GHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLTFK  138 (432)
T ss_dssp             HHHHHHHT-TCEEEEEECCCC---------------------HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCBHH
T ss_pred             HHHHHHHC-CCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCcHH
Confidence            46779995 999999999999999854         458899999987777665 7999  9999999999998887777


Q ss_pred             hHHHhhhheeecceeecccc------CCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCcccccccc
Q 022791           71 NMVKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV  144 (292)
Q Consensus        71 ~~~~l~r~~t~~~~~~~~g~------~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~i  144 (292)
                      .++++++++|++++.++.++      .++.++|+|+||+||||        ||+.++++   +||||.||++|++++||+
T Consensus       139 ~~l~l~~~~tv~~ml~~~~~k~r~~~~~~is~~ef~YPlLQaa--------Dil~l~~~---l~~gG~DQ~~ni~l~rdl  207 (432)
T 1h3f_A          139 EVVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAY--------DSVAIRAD---VEMGGTDQRFNLLVGREV  207 (432)
T ss_dssp             HHHHHHTTSBHHHHTTSHHHHHHHHTTCCCBGGGGTHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHH
T ss_pred             HHHHHhCcCcHHHHHhhhhHHHHhhcCCCCCccccchhhHHhh--------hhhhcCcc---EEEechHHHHHHHHHHHH
Confidence            77888888888887655432      25689999999999999        99999985   899999999999999999


Q ss_pred             CcccCCCCccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhh
Q 022791          145 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL  224 (292)
Q Consensus       145 a~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l  224 (292)
                      ++|||..+|..+++|+||||+| ++|||||.+| +|+|+|+|++|++||++ +.+                  ++++.|+
T Consensus       208 arr~~~~~~~~lt~pll~gldG-~~KMSKS~~n-~I~L~dsp~~i~~Ki~~-~~d------------------~~v~~~l  266 (432)
T 1h3f_A          208 QRAYGQSPQVCFLMPLLVGLDG-REKMSKSLDN-YIGLTEPPEAMFKKLMR-VPD------------------PLLPSYF  266 (432)
T ss_dssp             HHHTTCCCCEEEEECCCBCTTS-SSBCCGGGTC-CCBTTSCHHHHHHHHHT-SCG------------------GGHHHHH
T ss_pred             HHHhCCCCceEeecccccCCCC-ccccCcCCCC-eeCCCCCHHHHHHHHhC-CCc------------------cHHHHHH
Confidence            9999988888888999999998 4699999987 99999999999999999 733                  3567889


Q ss_pred             hhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHH----HHHHHHhhhhHH-HHHhhhcc
Q 022791          225 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE----RHQVARAAVTDE-MVDAFMAV  284 (292)
Q Consensus       225 ~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~----pir~~~~~~~~~-~l~~~l~~  284 (292)
                      ++|+.  .+.+|+++.+..   +|+++|+.||+.|+++++    |||+||+++.+. +|++++..
T Consensus       267 ~~ft~--~~~eei~~~~~~---~~~~~K~~LA~~i~~~l~~~~~pirerr~~~~~~~~v~~il~~  326 (432)
T 1h3f_A          267 RLLTD--LEEEEIEALLKA---GPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFGR  326 (432)
T ss_dssp             HHHCC--CCHHHHHHHHHH---CHHHHHHHHHHHHHHHHHSSSCCSCCSHHHHHHTTCCGGGTTC
T ss_pred             HHcCC--CCHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccchHHHHHHHhhchHHHHHHHhh
Confidence            98853  345555555543   899999999999999999    999999999875 78888776

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=100.00  E-value=2.1e-49  Score=399.70  Aligned_cols=245  Identities=13%  Similarity=0.161  Sum_probs=210.0

Q ss_pred             hhhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch---hhhHhHHHhhh
Q 022791            3 TKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG---AFYKNMVKVAK   77 (292)
Q Consensus         3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~---~~~~~~~~l~r   77 (292)
                      .+|+|..+|+.++|+||||||+++++  .+++++++++.+++++|+|||+|| ++.|+.||+|...   .||..+++|++
T Consensus       407 ~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~  485 (690)
T 3p0j_A          407 KDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPS-SVKIVTENEVILGNCDDFWVSVIGIAR  485 (690)
T ss_dssp             HHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCT-TSEEEEHHHHHHHTHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-CeEEEECCchhccchhhHHHHHHHHHH
Confidence            46778778999999999999999877  799999999999999999999998 6777778888754   69999999999


Q ss_pred             heeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchh
Q 022791           78 CVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIE  157 (292)
Q Consensus        78 ~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~  157 (292)
                      .+|+++++++++ .++.++|+++||+||||        |++.+++|   ++|||+||++|++||||+|+|++  +|+.++
T Consensus       486 ~~tl~r~~~~~~-~~~~~i~~~~YPlmQaa--------Di~~l~aD---i~~gG~DQ~~~~~LaRd~~~~~~--~~~~~~  551 (690)
T 3p0j_A          486 KNLLSHVEELYG-GEVRNAGQVIAALMRVA--------TALMLSVS---HVISTSLDGHINAFAREYTKERI--DCVQTL  551 (690)
T ss_dssp             TSCHHHHHHHTT-SCCSSHHHHHHHHHHHH--------HHHHTTCS---EEEECSTTTTTTHHHHHHTTTCS--EEEECC
T ss_pred             hhhHHHHHHHhC-CCCcchHHHHHHHHHHh--------hhhccCCC---EEecccccHHHHHHHHHHHHhcc--Cccccc
Confidence            999999999886 57789999999999999        99999998   69999999999999999999975  577788


Q ss_pred             ccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc---------
Q 022791          158 SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL---------  228 (292)
Q Consensus       158 ~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~---------  228 (292)
                      ++++|+|+||+.+||||+++|+|+|+|+|++|++||++ |||+++ .       ++||.++    |+.++.         
T Consensus       552 ~~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI~k-A~c~p~-v-------e~np~l~----~~~~~~~~~~~~~i~  618 (690)
T 3p0j_A          552 EGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPN-E-------EANPVIS----VAQHLLAQHGALSIE  618 (690)
T ss_dssp             CCSSCCSSCCCC-------CCSCBTTCCHHHHHHHHHH-SCCCTT-C-------SCSHHHH----HHHHHHHHHSCEEEC
T ss_pred             ccccccCCCcccccCCCCCCCeeeccCCHHHHHHHHHH-hcCCCC-C-------CCChHHH----HHHHHhccCCceEEe
Confidence            89999999997777788888999999999999999999 999984 2       5677554    444321         


Q ss_pred             ------c--ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 022791          229 ------E--DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD  275 (292)
Q Consensus       229 ------~--~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~  275 (292)
                            .  +++++++|+++|.+|++||+|+|++|++.|+++|+|+|++++-...
T Consensus       619 r~~~~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~Re~~~~~~~  673 (690)
T 3p0j_A          619 RGEANGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNGELK  673 (690)
T ss_dssp             CCTTTTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred             chhhhCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                  0  2578999999999999999999999999999999999999984443

>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.3e-48  Score=374.89  Aligned_cols=235  Identities=13%  Similarity=0.093  Sum_probs=198.7

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc--------cCHHHHHHHHHhc---hhhhhhccCCCCceeEecCCcccchh---
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN--------LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGA---   67 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~--------~~~~~i~~~~~~~---~~~~lA~Gldp~k~~i~~qs~~~~~~---   67 (292)
                      .++|||++ |+.++++|||+||+++++        .+++++++|++.+   ++.|+|||+||+|++||.||+|+++.   
T Consensus        56 ~l~~lQ~~-G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l  134 (432)
T 2jan_A           56 TLRRFQRA-GHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAI  134 (432)
T ss_dssp             HHHHHHHT-TCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHH
T ss_pred             HHHHHHHC-CCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHH
Confidence            46789995 999999999999999865        7899999999654   77899999999999999999998752   


Q ss_pred             -hhH------hHHHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccC----CCcccccccccccCCC
Q 022791           68 -FYK------NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDP  136 (292)
Q Consensus        68 -~~~------~~~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~  136 (292)
                       |+.      ++.++.++.++++..    ..++.++|+|+||+||||        ||+.+    +++   +||||.||+|
T Consensus       135 ~~lr~l~~~~tv~~m~~~~~~k~r~----~~~~is~~ef~YPlLQaa--------Dil~l~~~~~~~---i~~gG~DQ~~  199 (432)
T 2jan_A          135 EFLRDIGKHFSVNVMLARDTIRRRL----AGEGISYTEFSYLLLQAN--------DYVELHRRHGCT---LQIGGADQWG  199 (432)
T ss_dssp             HHHHHTGGGCBHHHHHHSHHHHHHT----STTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEECSTTHH
T ss_pred             HHHHHHhccCcHHHHhcchHHhhhh----cCCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHH
Confidence             221      255566666655433    135679999999999999        99999    986   7999999999


Q ss_pred             ccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecC---CHHHHHHHhhhccccCCcccHHHHHHhCC
Q 022791          137 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGA  213 (292)
Q Consensus       137 h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~I~kKI~k~A~t~~~~~~~~~~~~~~  213 (292)
                      |++++||+|+|||..+|..++.|+|||++|  +|||||.+|++|+|+|   +|+++++||++ + +              
T Consensus       200 ni~lgrdlarr~~~~~~~~l~~plL~~ldG--~KMSKS~~nsaI~L~d~~tsp~~i~qki~~-~-~--------------  261 (432)
T 2jan_A          200 NIIAGVRLVRQKLGATVHALTVPLVTAADG--TKFGKSTGGGSLWLDPQMTSPYAWYQYFVN-T-A--------------  261 (432)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCBCTTS--CBTTBCSSSCBCBSSTTTSCHHHHHHHHHT-C-C--------------
T ss_pred             HHHHHHHHHHHhCCCCccccccccccCCCc--CcCCCCCCCCeEEccCCCCCHHHHHHHHhc-C-C--------------
Confidence            999999999999998888899999999998  6999999988999999   99999999999 4 1              


Q ss_pred             Cccccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791          214 NLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  274 (292)
Q Consensus       214 ~p~~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~  274 (292)
                      +++   +++|+.+|+. +.+++++++++|.+|. +++++|+.||+.|++++++..+..+...
T Consensus       262 D~~---v~~~l~l~t~~~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a~~  319 (432)
T 2jan_A          262 DAD---VIRYLRWFTFLSADELAELEQATAQRP-QQRAAQRRLASELTVLVHGEAATAAVEH  319 (432)
T ss_dssp             HHH---HHHHHHHHSCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chh---HHHHHHHHHcCChHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            122   3466666543 6789999999999886 9999999999999999999888766544

>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*

Probab=100.00  E-value=2.3e-48  Score=366.15  Aligned_cols=237  Identities=14%  Similarity=0.076  Sum_probs=184.6

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHhchhhhhhccCCCCc-----------eeEecCC
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTK-----------TFIFSDF   61 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k-----------~~i~~qs   61 (292)
                      .++|||++ |+.++++|||+||+|+++         .+++++++|+++++++|+|+ +||++           +.||.||
T Consensus        70 ~~~~lQ~~-G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns  147 (356)
T 2pid_A           70 GLFHLQRA-GHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNS  147 (356)
T ss_dssp             HHHHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETH
T ss_pred             HHHHHHHC-CCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHHh-cChhhccccccCCCcceEEEech
Confidence            35679995 999999999999999754         27999999999999999999 99866           8888999


Q ss_pred             cccch----hhhHh---HHHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccC----CCcccccccc
Q 022791           62 DYVGG----AFYKN---MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPC  130 (292)
Q Consensus        62 ~~~~~----~~~~~---~~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpv  130 (292)
                      +|..+    +++.+   .+.+++|.+...++.+....++.++|+|+||+||||        ||+.|    +++   +|||
T Consensus       148 ~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~~~~is~g~f~YPvLQAa--------Dil~l~~~~~~~---i~p~  216 (356)
T 2pid_A          148 AWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAY--------DFYYLFQRYGCR---VQLG  216 (356)
T ss_dssp             HHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTSTTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEE
T ss_pred             HhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhccCCCCchHHHHHHHHHHH--------HHHHHhccCCCc---EEec
Confidence            88754    23332   344555555555544433234689999999999999        99999    986   7999


Q ss_pred             cccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecC---CHHHHHHHhhhccccCCcccHHH
Q 022791          131 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVEL  207 (292)
Q Consensus       131 G~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~I~kKI~k~A~t~~~~~~~~  207 (292)
                      |.||+||+++|||+|+|||..+|..++.|+||||+|  +|||||.+ ++|+|+|   +|++|++||++ +.         
T Consensus       217 G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG--~KMSKS~~-naI~L~d~~tsp~~i~~ki~~-~~---------  283 (356)
T 2pid_A          217 GSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTG--AKLGKSAG-NAVWLNRDKTSPFELYQFFVR-QP---------  283 (356)
T ss_dssp             EGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC----------------CCBSSTTTSCHHHHHHHHHT-CC---------
T ss_pred             cHHHHHHHHHHHHHHHHhCCCCccccccccccCCCc--ccccCCCC-CeeeccCCCCCHHHHHHHHHc-CC---------
Confidence            999999999999999999998888999999999998  69999975 5999999   99999999999 51         


Q ss_pred             HHHhCCCccccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791          208 HRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  274 (292)
Q Consensus       208 ~~~~~~~p~~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~  274 (292)
                            ++++   ++|+.+|+. +.+++++|+++|.+| .+++++|+.||+.|+++++..++..+...
T Consensus       284 ------D~~v---~~~l~~~t~~~~~~i~~l~~~~~~g-~~~~~~K~~La~~v~~~l~g~~~~~~a~~  341 (356)
T 2pid_A          284 ------DDSV---ERYLKLFTFLPLPEIDHIMQLHVKE-PERRGPQKRLAAEVTKLVHGREGLDSAKR  341 (356)
T ss_dssp             ------HHHH---HHHHHHHCCCCHHHHHHHHHHHHHC-GGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------chhH---HHHHHHHHcCCchHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence                  1223   456665542 678999999999987 59999999999999999999998876654

>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A

Probab=100.00  E-value=4.4e-47  Score=363.57  Aligned_cols=236  Identities=14%  Similarity=0.159  Sum_probs=197.9

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc-c--------CHHHHHHHHHhc---hhhhhhccCCCCceeEecCCcccch---
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-L--------SVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGG---   66 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~--------~~~~i~~~~~~~---~~~~lA~Gldp~k~~i~~qs~~~~~---   66 (292)
                      .++|||++ |+.++++|||+||+++++ .        +++++++|++.+   ++.+++||+||+|++||.||+|+++   
T Consensus        54 ~l~~lQ~~-G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~  132 (419)
T 2ts1_A           54 TMRRFQQA-GHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDV  132 (419)
T ss_dssp             HHHHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCH
T ss_pred             HHHHHHHC-CCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchH
Confidence            46789995 999999999999999865 2        999999999655   7789999999999999999999864   


Q ss_pred             -hhhH---hHHHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccC----CCcccccccccccCCCcc
Q 022791           67 -AFYK---NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYF  138 (292)
Q Consensus        67 -~~~~---~~~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~  138 (292)
                       +|+.   ..+.++||.++..+++++  .++.++|+|+||+||||        ||+.+    +++   +||||.||++|+
T Consensus       133 ~~~l~~~~~~~tv~rm~~~~~~k~r~--~~~is~~ef~YPlLQaa--------Dil~l~~~~~~~---i~~gG~DQ~~ni  199 (419)
T 2ts1_A          133 ITFLRDVGKHFSVNYMMAKESVQSRI--ETGISFTEFSYMMLQAY--------DFLRLYETEGCR---LQIGGSDQWGNI  199 (419)
T ss_dssp             HHHHHHTGGGCCHHHHHTSHHHHTTT--TTCCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHH
T ss_pred             HHHHHHHhcccCHHHHhccchhhhcc--CCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHH
Confidence             3333   246666666666665554  35789999999999999        99999    885   799999999999


Q ss_pred             ccccccCccc-CCCCccchhccccccccCCcccccccCCCceeEecC---CHHHHHHHhhhccccCCcccHHHHHHhCCC
Q 022791          139 RMTRDVAPRI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGAN  214 (292)
Q Consensus       139 elaR~ia~r~-n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~  214 (292)
                      +++||+|+|| |..+|..+++|+|||++|  +|||||.+| +|+|+|   +|+++++||++ +      +         +
T Consensus       200 ~lgrdlarr~~~~~~~~~lt~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~qki~~-~------~---------D  260 (419)
T 2ts1_A          200 TAGLELIRKTKGEARAFGLTIPLVTKADG--TKFGKTESG-TIWLDKEKTSPYEFYQFWIN-T------D---------D  260 (419)
T ss_dssp             HHHHHHHHHHHC--CCEEEEECCCCCTTS--CCTTCCSSC-CCBSSTTTSCHHHHHHHHHT-C------C---------H
T ss_pred             HHHHHHHHHhcCCCCeeecccccccCCCc--ccccCCCCC-eEecCCCCCCHHHHHHHHhc-C------C---------c
Confidence            9999999999 988888899999999998  699999875 999999   99999999999 4      1         1


Q ss_pred             ccccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791          215 LEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  274 (292)
Q Consensus       215 p~~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~  274 (292)
                         +.+++|+.+|+. +.+++++++++|.+|. +++++|+.||+.|++++++..+..+...
T Consensus       261 ---~~v~~~l~l~t~~~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a~~  317 (419)
T 2ts1_A          261 ---RDVIRYLKYFTFLSKEEIEALEQELREAP-EKRAAQKTLAEEVTKLVHGEEALRQAIR  317 (419)
T ss_dssp             ---HHHHHHHHHHCCCCHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             ---hhHHHHHHHHHcCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence               223566666543 6789999999999886 9999999999999999999887766543

>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A

Probab=100.00  E-value=2.1e-46  Score=356.61  Aligned_cols=238  Identities=14%  Similarity=0.079  Sum_probs=193.8

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHhchhhhhhcc-----------CC---CCceeEe
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACG-----------FD---VTKTFIF   58 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~~~~~~lA~G-----------ld---p~k~~i~   58 (292)
                      .++|||++ |+.++++|||+||+++++         .+++++++|++.+.++++|+|           +|   |++++||
T Consensus        88 ~l~~lQ~~-G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~  166 (392)
T 1y42_X           88 PLFWMYLE-GYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIV  166 (392)
T ss_dssp             HHHHHHHH-TCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEE
T ss_pred             HHHHHHHc-CCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEE
Confidence            45779996 999999999999999854         488899999999888888765           45   7899999


Q ss_pred             cCCcccch----hhhHhHH---HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccC----CCccccc
Q 022791           59 SDFDYVGG----AFYKNMV---KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCL  127 (292)
Q Consensus        59 ~qs~~~~~----~~~~~~~---~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~  127 (292)
                      .||+|..+    .++..++   +++||++.+.++.+++..++.++|+|+||+||||        ||+.+    +++   +
T Consensus       167 ~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~~~~is~gef~YPlLQAa--------Dil~l~~~~~~~---i  235 (392)
T 1y42_X          167 NNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQGDGVSFAEFTYPIMQGW--------DWFELFYQQGVQ---M  235 (392)
T ss_dssp             ETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSSSSCCCHHHHHHHHHHHH--------HHHHHHHHHCEE---E
T ss_pred             EccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcCCCCcccHHHHHHHHHHH--------HHHHHhccCCcc---E
Confidence            99998533    2343444   7777776666666655456789999999999999        99976    575   7


Q ss_pred             ccccccCCCccccccccCcccCC-----------------CCccchhccccccccCCcccccccCCCceeEecC---CHH
Q 022791          128 IPCAIDQDPYFRMTRDVAPRIGY-----------------HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAK  187 (292)
Q Consensus       128 vpvG~DQ~~h~elaR~ia~r~n~-----------------~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~  187 (292)
                      ||||.||+||++++||+|+|||.                 ++|..+++|+||||+|  +|||||.+| +|+|+|   +|+
T Consensus       236 ~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~  312 (392)
T 1y42_X          236 QIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSG--AKFGKSAGN-AIWLDPYQTSVF  312 (392)
T ss_dssp             EEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTC--CBTTBCSSS-BCBSSTTTSCHH
T ss_pred             EecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCch--hhccCCCCC-eeeccCCCCCHH
Confidence            99999999999999999999864                 4677788999999998  699999875 999999   999


Q ss_pred             HHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHH
Q 022791          188 AIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH  266 (292)
Q Consensus       188 ~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pi  266 (292)
                      ++++||++ + +              ++++   +.|+.+|+. +.+++++|+++|.+|. +++++|+.||+.|++++++.
T Consensus       313 ~i~qki~~-~-~--------------D~~v---~~~l~~ft~l~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~lhg~  372 (392)
T 1y42_X          313 DFYGYFVR-R-S--------------DQEV---ENLLKLFTFMPISEITKTMEEHIKDP-SKRVAQHTLAREVVTLVHGK  372 (392)
T ss_dssp             HHHHHHHT-C-C--------------TTTH---HHHHHHHCCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHc-C-C--------------chhH---HHHHHHHHhCChhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCH
Confidence            99999999 4 1              1233   456665543 6789999999999886 99999999999999999999


Q ss_pred             HHHHhhhh
Q 022791          267 QVARAAVT  274 (292)
Q Consensus       267 r~~~~~~~  274 (292)
                      ++.++...
T Consensus       373 ~~~~~a~~  380 (392)
T 1y42_X          373 QEASAAED  380 (392)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99877654

>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*

Probab=100.00  E-value=1e-45  Score=354.90  Aligned_cols=237  Identities=13%  Similarity=0.162  Sum_probs=196.4

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc-c--------CHHHHHHHHHhchhhhhhccCCC---CceeEecCCcccch-hh
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-L--------SVEESQRLARENAKDIIACGFDV---TKTFIFSDFDYVGG-AF   68 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~--------~~~~i~~~~~~~~~~~lA~Gldp---~k~~i~~qs~~~~~-~~   68 (292)
                      .++|||++ |+.++++|||+||+++++ .        +++++++|++.+.++++|+ +||   +|++||.||+|+.+ .+
T Consensus        56 ~~~~lQ~~-G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~  133 (420)
T 1jil_A           56 TLRRFQEH-GHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISL  133 (420)
T ss_dssp             HHHHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCH
T ss_pred             HHHHHHHC-CCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccH
Confidence            46789995 999999999999999865 2        9999999999999999988 888   99999999999743 33


Q ss_pred             hHhHHHhhhheeecceeecccc----CCCCccccccCCccccCCCCCCCCCccccC----CCcccccccccccCCCcccc
Q 022791           69 YKNMVKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRM  140 (292)
Q Consensus        69 ~~~~~~l~r~~t~~~~~~~~g~----~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~el  140 (292)
                      +.-+..+++++|++++.+..++    .++.++|+|+||+||||        ||+.+    +++   +||||.||++|+++
T Consensus       134 l~~l~~~~~~~tv~~m~~~~~~k~r~~~~is~~ef~YplLQaa--------D~l~l~~~~~~~---i~~gG~DQ~~ni~~  202 (420)
T 1jil_A          134 ISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAI--------DFGHLNRELNCK---IQVGGSDQWGNITS  202 (420)
T ss_dssp             HHHHHHTGGGCCHHHHHTCGGGHHHHTTTCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHHH
T ss_pred             HHHHHHHhccccHHHHhcchhhhhhccCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHH
Confidence            3223334444444444443222    35789999999999999        99999    885   79999999999999


Q ss_pred             ccccCccc-CCCCccchhccccccccCCcccccccCCCceeEecC---CHHHHHHHhhhccccCCcccHHHHHHhCCCcc
Q 022791          141 TRDVAPRI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLE  216 (292)
Q Consensus       141 aR~ia~r~-n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~  216 (292)
                      +||+|+|| |..+|..+++|+|||++|  +|||||.+| +|+|+|   ||+++++||++ +-               +  
T Consensus       203 grdla~r~~~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~~ki~~-~~---------------D--  261 (420)
T 1jil_A          203 GIELMRRMYGQTDAYGLTIPLVTKSDG--KKFGKSESG-AVWLDAEKTSPYEFYQFWIN-QS---------------D--  261 (420)
T ss_dssp             HHHHHHHHHCCCCCEEEEECCCBCTTS--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-CC---------------H--
T ss_pred             HHHHHHHhcCCCCeeEeecccccCCcc--ccccCCCCC-eEecCCCCCCHHHHHHHHhc-CC---------------c--
Confidence            99999999 988888899999999998  699999976 999999   99999999999 41               1  


Q ss_pred             ccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791          217 VDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  274 (292)
Q Consensus       217 ~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~  274 (292)
                       +.+++|+.+|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+...
T Consensus       262 -~~v~~~l~~~t~~~~~ei~~l~~~~~~g~-~~~~~K~~La~~v~~~~hg~~~~~~a~~  318 (420)
T 1jil_A          262 -EDVIKFLKYFTFLGKEEIDRLEQSKNEAP-HLREAQKTLAEEVTKFIHGEDALNDAIR  318 (420)
T ss_dssp             -HHHHHHHHHHCCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             -hhHHHHHHHHHcCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence             223566666643 6789999999999886 9999999999999999999887766544

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}

Probab=97.33  E-value=6e-05  Score=73.37  Aligned_cols=68  Identities=16%  Similarity=0.096  Sum_probs=52.5

Q ss_pred             ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeE-ecC---CHHHHHHHhhh
Q 022791          126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK  195 (292)
Q Consensus       126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~D---~~~~I~kKI~k  195 (292)
                      |+|..|.|+..+-..-..+.+.||.+.|...+.++|.+.+|  +|||||+.+..|. +.+   .|+.|+.-+..
T Consensus       205 thviRG~D~~~~t~~q~~l~~alg~~~P~~~H~plil~~~g--~KLSKr~g~~~l~~~r~~G~~peal~~~l~~  276 (492)
T 2cfo_A          205 TDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTG--QKLSKRDGVTSISDFRAMGYLAPALANYMTL  276 (492)
T ss_dssp             SEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECCEECSSS--SBCCTTSSCCBHHHHHHTTCCHHHHHHHHHH
T ss_pred             CeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeeeEECCCC--CEecccCCcccHHHHHHCCCCHHHHHHHHHH
Confidence            57889999998887777777899999898888899999998  7999998764321 111   46677666665

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A

Probab=97.30  E-value=3.5e-05  Score=74.64  Aligned_cols=180  Identities=9%  Similarity=0.048  Sum_probs=105.8

Q ss_pred             hhhH-HhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCcee-------EecCCcccch--hhhHh-
Q 022791            3 TKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------IFSDFDYVGG--AFYKN-   71 (292)
Q Consensus         3 ~~~l-Q~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~-------i~~qs~~~~~--~~~~~-   71 (292)
                      .+|+ ...+|..+++-|-|.    +..   ....++...++.++..+|++++...       .|.||+..+.  .+... 
T Consensus        24 ~n~l~Ar~~~G~filRieDt----D~~---R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L   96 (468)
T 1j09_A           24 FNYAWARRNGGRFIVRIEDT----DRA---RYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEEL   96 (468)
T ss_dssp             HHHHHHHHTTCEEEECBCCC----CTT---SCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEEeCcC----CCc---ccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeeccCCHHHHHHHHHHH
Confidence            4563 333577777877774    211   1234566677888889999999864       4889987641  11110 


Q ss_pred             ------------HHHh-------------hhheeecceeecc--cc--------CCC-------CccccccCCccccCCC
Q 022791           72 ------------MVKV-------------AKCVTYNKVVGIF--GF--------TGE-------DHIGKVSFPPVQAVPS  109 (292)
Q Consensus        72 ------------~~~l-------------~r~~t~~~~~~~~--g~--------~~~-------~~~g~l~YP~lqaad~  109 (292)
                                  --+|             +|..+..+..+..  |.        ...       .-.|.+.+|..+.-  
T Consensus        97 ~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~--  174 (468)
T 1j09_A           97 LKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIP--  174 (468)
T ss_dssp             HHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSC--
T ss_pred             HHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeccceeEeecccCCC--
Confidence                        1111             1122222111100  10        000       01244555555444  


Q ss_pred             CCCCCCccccCCCccc----------------ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccc
Q 022791          110 FPSSFPHLFSGKDHLR----------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA  173 (292)
Q Consensus       110 ~~~~~~Dil~~~ad~~----------------~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSk  173 (292)
                            |..++++|..                |+|.-|.|+..|...-.-+.+.+|.+.|...+.+++.+.+|  .||||
T Consensus       175 ------D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~~li~~~~g--~klSK  246 (468)
T 1j09_A          175 ------DVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDK--TKISK  246 (468)
T ss_dssp             ------CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--CBCCT
T ss_pred             ------CeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEeeeeeCCCC--Ccccc
Confidence                  6666666520                23444999999988888888999998898777889999988  79999


Q ss_pred             cCCCceeE-ecC---CHHHHHHHhhhcccc
Q 022791          174 SDPNSAIY-VTD---SAKAIKNKINKYAFS  199 (292)
Q Consensus       174 S~~~s~I~-L~D---~~~~I~kKI~k~A~t  199 (292)
                      ++.+..|. +.+   .|+.|..-+...-++
T Consensus       247 R~g~~~l~~~~~~G~~peal~~~l~~lG~~  276 (468)
T 1j09_A          247 RKSHTSLDWYKAEGFLPEALRNYLCLMGFS  276 (468)
T ss_dssp             TTSCCBHHHHHHTTCCHHHHHHHHHHHSCC
T ss_pred             ccchhhHHHHHHCCCCHHHHHHHHHHhccC
Confidence            98764321 111   477777666653343

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*

Probab=97.24  E-value=6e-05  Score=68.86  Aligned_cols=60  Identities=18%  Similarity=0.112  Sum_probs=32.9

Q ss_pred             cccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecCCHHH
Q 022791          127 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA  188 (292)
Q Consensus       127 ~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~  188 (292)
                      +|.-|.|+..+...-..+.+.+|.+.|...+.++|.+.+|  .||||+..+..|.-.+...-
T Consensus       187 hvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g--~KLSKR~g~~~v~~~~~~~~  246 (298)
T 1nzj_A          187 EIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--AKLSKQNHAPALPKGDPRPV  246 (298)
T ss_dssp             EEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---------------CCCSSCCHHH
T ss_pred             EEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC--CcccccCCccChhcCCccHH
Confidence            3444999876655555556888999998888999999998  79999987655554444433

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=97.19  E-value=0.00041  Score=68.92  Aligned_cols=68  Identities=9%  Similarity=0.087  Sum_probs=52.9

Q ss_pred             ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeE-ecC---CHHHHHHHhhh
Q 022791          126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK  195 (292)
Q Consensus       126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~D---~~~~I~kKI~k  195 (292)
                      |+|.-|.|+..+...-+.+.+.||.+.|...+.++|.+.+|  .||||++.+..|. +.+   .|+.|..-+..
T Consensus       317 thvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpli~~~~g--~KLSKR~g~~~l~~~~~~G~~peal~~~l~~  388 (592)
T 3al0_C          317 SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR--TPLSKRHGATSVEHFRREGILSRALMNYLAL  388 (592)
T ss_dssp             SBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTTS--SBCCTTTCSSBHHHHHHTTCCHHHHHHHHTT
T ss_pred             CeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccccCCcccHHHHHHCCCCHHHHHHHHHH
Confidence            46667999999998888899999999998888899999998  7999998753221 112   46777766665

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*

Probab=97.01  E-value=0.00018  Score=69.89  Aligned_cols=66  Identities=11%  Similarity=0.094  Sum_probs=52.3

Q ss_pred             ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecC------CHHHHHHHhhh
Q 022791          126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK  195 (292)
Q Consensus       126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~I~kKI~k  195 (292)
                      |+|.-|.|+..+...-+.+.+.||.+.|...+.|+|.+.+|  +||||++.+.  .|.+      .|+.|..-+..
T Consensus       213 ThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~g--~KLSKR~g~~--~l~~~r~~G~~peal~n~l~~  284 (488)
T 3afh_A          213 SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR--TPLSKRHGAT--SVEHFRREGILSRALMNYLAL  284 (488)
T ss_dssp             SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTS--SBCCTTTSCC--BHHHHHHHTCCHHHHHHHHHH
T ss_pred             CEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCCC--CcccCcCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence            46667999999988888888999999998888899999998  7999998753  2322      46777766665

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A

Probab=96.83  E-value=0.00031  Score=68.45  Aligned_cols=67  Identities=15%  Similarity=0.124  Sum_probs=49.5

Q ss_pred             cccccccCCCccccccccCccc-----CCCCccchhccccccccCCcccccccCCCceeE-ecC---CHHHHHHHhhh
Q 022791          127 LIPCAIDQDPYFRMTRDVAPRI-----GYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK  195 (292)
Q Consensus       127 ~vpvG~DQ~~h~elaR~ia~r~-----n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~D---~~~~I~kKI~k  195 (292)
                      +|.-|.|+..+...-+.+.+.|     |.+.|...+.+++.+.+|  +||||++.+.+|. +.+   .|+.|..-+..
T Consensus       211 hviRG~D~~~~t~~q~~l~~aL~~~g~g~~~P~~~h~plil~~~g--~KLSKR~g~~~l~~~r~~G~~peAl~~~l~~  286 (498)
T 2ja2_A          211 HVLRGEDLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEGT--KKLSKRDPQSNLFAHRDRGFIPEGLLNYLAL  286 (498)
T ss_dssp             EEEEEGGGGGGHHHHHHHHHHHHHTTSCCCCCEEEEECCEECSSS--SBCCTTSGGGBHHHHHHHTCCHHHHHHHHHT
T ss_pred             EEEEChhhhhccHHHHHHHHHHHhhcCCCCCCeEEEeeeeECCCC--CcccccCCcccHHHHHhCCCCHHHHHHHHHH
Confidence            3444999999988777788888     999998888899999988  7999998653321 111   36666666655

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}

Probab=92.78  E-value=0.0092  Score=57.57  Aligned_cols=57  Identities=21%  Similarity=0.294  Sum_probs=36.9

Q ss_pred             cccccccCCCccccccccCcccCCCCcc--chhccccc-cccCCcccccccCCCceeEecC
Q 022791          127 LIPCAIDQDPYFRMTRDVAPRIGYHKPA--LIESSFFP-ALQGETGKMSASDPNSAIYVTD  184 (292)
Q Consensus       127 ~vpvG~DQ~~h~elaR~ia~r~n~~~p~--~l~~~~lp-gL~g~~~KMSkS~~~s~I~L~D  184 (292)
                      +-.+|.||..|+.--..+++.+|++.+.  ++.+.++. +-+|...|||||.+| .|.+.|
T Consensus       239 Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn-~v~l~d  298 (464)
T 3fnr_A          239 INIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN-FILMSD  298 (464)
T ss_dssp             EEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS-SCBHHH
T ss_pred             EEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC-CCCHHH
Confidence            3468999999999888889999986542  23344552 225533599999986 666543

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*

Probab=91.96  E-value=0.012  Score=56.99  Aligned_cols=53  Identities=19%  Similarity=0.171  Sum_probs=33.0

Q ss_pred             cccccccCCC-ccccccccCcccCCCCcc-chhccccccccCCcccccccCCCceeEec
Q 022791          127 LIPCAIDQDP-YFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVT  183 (292)
Q Consensus       127 ~vpvG~DQ~~-h~elaR~ia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  183 (292)
                      +..+|.||.. |.++--..+..+|.+.|. .+++.+|.. +|  +|||||.+| .|.+.
T Consensus       253 i~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~G--~KMSKS~GN-~i~~~  307 (497)
T 2csx_A          253 LHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-EG--KKMSKTLGN-VVDPY  307 (497)
T ss_dssp             CEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-SS--SBCCTTTTC-CCCHH
T ss_pred             EEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-CC--ceeCCcCCC-CCCHH
Confidence            5789999987 444321122234665554 445666654 65  799999986 66543

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}

Probab=91.31  E-value=0.019  Score=55.66  Aligned_cols=68  Identities=13%  Similarity=0.053  Sum_probs=50.3

Q ss_pred             ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeE-ecC---CHHHHHHHhhh
Q 022791          126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK  195 (292)
Q Consensus       126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~D---~~~~I~kKI~k  195 (292)
                      |+|..|.||..|...-.-+.+.+|.+.|...+.+++.+.+|  +||||++.+..|. +.+   .|+.|..-+..
T Consensus       220 thvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G--~KLSKR~g~~~l~~~~~~G~~peal~~~l~~  291 (481)
T 2o5r_A          220 THVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDG--KKLSKRHGATSVEAFRDMGYLPEALVNYLAL  291 (481)
T ss_dssp             SEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCGGGSCCBHHHHHHHTCCHHHHHHHHHT
T ss_pred             CeEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCC--CcccCcCCcccHHHHHHCCCCHHHHHHHHHH
Confidence            57889999999988888888999998898777888888887  7999998753221 111   35566655554

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A

Probab=91.28  E-value=0.015  Score=56.13  Aligned_cols=52  Identities=19%  Similarity=-0.018  Sum_probs=33.1

Q ss_pred             cccccccCCC-cccc--ccccCcccCCCCcc-chhccccccccCCcccccccCCCceeEec
Q 022791          127 LIPCAIDQDP-YFRM--TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVT  183 (292)
Q Consensus       127 ~vpvG~DQ~~-h~el--aR~ia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  183 (292)
                      +..+|.||.. |..+  ++-  ..+|.+.|. .+++.+|..-+|  +|||||.+| .|.+.
T Consensus       254 i~~~G~D~~~fh~~~~~a~~--~~~g~~~~~~v~~~G~v~~~~G--~KMSKS~GN-~i~p~  309 (500)
T 2d5b_A          254 WHLIGKDILKPHAVFWPTML--KAAGIPMYRHLNVGGFLLGPDG--RKMSKTLGN-VVDPF  309 (500)
T ss_dssp             EEEEEGGGHHHHHTHHHHHH--HHHTCCCCSEEEEECCEECTTS--SCCCTTTTC-CCCHH
T ss_pred             EEEEeechhhhHHHHHHHHH--HHcCCCCCcEEEECceEEeCCC--CcccccCCC-CCCHH
Confidence            5789999987 3333  322  224665565 445677664355  799999986 66554

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}

Probab=89.62  E-value=0.034  Score=54.73  Aligned_cols=51  Identities=14%  Similarity=0.063  Sum_probs=31.6

Q ss_pred             cccccccCCCccc-c--ccccCcccCCCCccch-hccccccccCCcccccccCCCceeEec
Q 022791          127 LIPCAIDQDPYFR-M--TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVT  183 (292)
Q Consensus       127 ~vpvG~DQ~~h~e-l--aR~ia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~  183 (292)
                      +...|.||..++. +  ++-.+  .|.+.|..+ .+.++ ..+|  +|||||.+| .|.+.
T Consensus       297 v~~~GkDii~FH~~~wpa~L~a--~g~~~~~~v~~hg~v-~~~G--~KMSKS~GN-vV~p~  351 (564)
T 3kfl_A          297 VHVVGKDILKFHAIYWPAFLMS--AELPLPERLVSHGWW-TKDH--KKISKSLGN-AFDPV  351 (564)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCE-EETT--EECCTTTTC-CCCHH
T ss_pred             eEEEeecccchHHHHHHHHHHh--CCCCCCcEEEEcccE-eeCC--ccccccCCC-CCCHH
Confidence            5689999977311 1  22222  355556444 46777 5566  799999987 66543

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A

Probab=87.75  E-value=0.052  Score=56.19  Aligned_cols=55  Identities=20%  Similarity=0.187  Sum_probs=35.3

Q ss_pred             CCCcccccccccccCCCccccccccCcc---cCCCCc--cchhccccccccCCcccccccCCCceeEe
Q 022791          120 GKDHLRCLIPCAIDQDPYFRMTRDVAPR---IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       120 ~~ad~~~~vpvG~DQ~~h~elaR~ia~r---~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +.+|   +...|.||... =++|.++.-   +|. .|  .++.+.++...+|  +|||||.+| .|..
T Consensus       480 ~P~d---~~v~G~Dii~~-W~a~~~~~~~~~~g~-~Pfk~v~~hG~vld~~G--~KMSKSlGN-vIdP  539 (862)
T 1gax_A          480 YPGD---VLVTGYDILFL-WVSRMEVSGYHFMGE-RPFKTVLLHGLVLDEKG--QKMSKSKGN-VIDP  539 (862)
T ss_dssp             CSBS---CEEEEGGGTTT-THHHHHHHHHHHSSS-CSBSEEEEECCEECTTS--CBCCTTTTC-CCCH
T ss_pred             CCce---EEecCcccccc-HHHHHHHHHHHhcCC-CcccEEEEeeeEEcCCC--CCccccCCC-CCCH
Confidence            4555   56899998753 345544432   233 34  3445778887787  799999987 5544

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*

Probab=87.44  E-value=0.032  Score=54.24  Aligned_cols=52  Identities=19%  Similarity=0.128  Sum_probs=29.7

Q ss_pred             cccccccCCCc-cccccccCcccCCCCcc-chhccccccccCCcccccccCCCceeEe
Q 022791          127 LIPCAIDQDPY-FRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       127 ~vpvG~DQ~~h-~elaR~ia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +..+|.||... ..+-...+..+|.+.|. ++.+.+|.. +|  +|||||.+| .|.+
T Consensus       268 i~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~G--~KMSKS~GN-~v~p  321 (524)
T 2x1l_A          268 LHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-RG--EKMSKSIGN-VVDP  321 (524)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-CS--CSEETTTEE-SSCH
T ss_pred             EEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-CC--cccCCcCCC-CCCH
Confidence            56899999752 22111112223555553 344566554 55  899999976 5554

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}

Probab=86.74  E-value=0.054  Score=52.86  Aligned_cols=51  Identities=20%  Similarity=0.090  Sum_probs=21.0

Q ss_pred             cccccccCCCcc-cc--ccccCcccCCCCccch-hccccccccCCcccccccCCCceeEec
Q 022791          127 LIPCAIDQDPYF-RM--TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVT  183 (292)
Q Consensus       127 ~vpvG~DQ~~h~-el--aR~ia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~  183 (292)
                      +...|.||...+ .+  ++-.+  +|.+.|..+ .+.++. ++|  +|||||.+| .|.+.
T Consensus       279 v~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~~G--~KMSKS~GN-vi~p~  333 (536)
T 4dlp_A          279 AHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-NRG--EKMSKSVGN-VIDPF  333 (536)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C---------------CCHH
T ss_pred             eEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-eCC--ceecccCCC-CCCHH
Confidence            568899998731 11  33222  355555443 466664 465  799999986 66543

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*

Probab=86.67  E-value=0.17  Score=52.80  Aligned_cols=56  Identities=27%  Similarity=0.134  Sum_probs=33.4

Q ss_pred             CCCcccccccccccCCC---ccccccccCcccCCCCc-cchhccccccccCCcccccccCCCceeEe
Q 022791          120 GKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       120 ~~ad~~~~vpvG~DQ~~---h~elaR~ia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +.+|   +...|.||..   |-.+....+ -+|..++ .++.+.++...+|  +|||||.+| .|.+
T Consensus       547 ~P~D---l~~~G~D~~r~wf~~~l~~s~~-~~g~~Pfk~v~~hG~V~d~~G--~KMSKSlGN-vV~P  606 (917)
T 1ffy_A          547 FPAD---MYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVMDGEG--KKMSKSLGN-VIVP  606 (917)
T ss_dssp             SSBS---EEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEECTTS--CCCCSSSSC-CCCH
T ss_pred             CCce---EEEEEecccccHHHHHHHHHHH-hhCCCcccceeEeeeEEcCCC--cCcccccCC-cCCh
Confidence            5566   5689999963   222333333 1243222 3345677776666  799999987 5543

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*

Probab=85.09  E-value=0.21  Score=48.52  Aligned_cols=50  Identities=16%  Similarity=0.073  Sum_probs=29.6

Q ss_pred             cccccccCCCcc---ccccccCcccCCCCccchh-ccccccccCCcccccccCCCceeEe
Q 022791          127 LIPCAIDQDPYF---RMTRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       127 ~vpvG~DQ~~h~---elaR~ia~r~n~~~p~~l~-~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +...|.||..++   ..|+-++.  |.+.|..+. +.++ ..+|  +|||||.+| .|..
T Consensus       281 ~~~~G~D~~~fh~~~~~a~l~~~--g~~~~~~v~~hg~l-~~~G--~KMSKSlGN-vi~p  334 (542)
T 3u1f_A          281 VHVIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWW-TKDR--KKISKSLGN-VFDP  334 (542)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHHH--TCCCCSCEEEECCC-EETT--BCCBTTTTB-CCCH
T ss_pred             EEEecccccccccchhHHHHHhh--cccccceeccccce-ecCC--ceeccccCC-CCCh
Confidence            467899996643   12333332  555554443 5554 3455  899999987 5543

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*

Probab=85.07  E-value=0.11  Score=53.51  Aligned_cols=52  Identities=23%  Similarity=0.163  Sum_probs=29.7

Q ss_pred             cccccccCCCccccccccCc--c-cCCCCc-cchhccccccccCCcccccccCCCceeEe
Q 022791          127 LIPCAIDQDPYFRMTRDVAP--R-IGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       127 ~vpvG~DQ~~h~elaR~ia~--r-~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +...|.||.... +++-++.  - +|.+.+ .++.+.++...+|  +|||||.+| .|.+
T Consensus       547 l~~~G~D~~r~w-~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G--~KMSKS~GN-vV~p  602 (821)
T 1ile_A          547 FIAEGIDQTRGW-FNSLHQLGVMLFGSIAFKNVICHGLILDEKG--QKMSKSKGN-VVDP  602 (821)
T ss_dssp             BEEEEGGGGGTH-HHHHHHHHHHHHSSCSBSEEEEECCEECTTS--SCCCTTTTC-CCCH
T ss_pred             cccchhhhhccH-HHHHHHHHHHhcCCCCcceEEEEeeEECCCC--CCCCccCCC-CCCH
Confidence            456899996421 1221111  1 133333 3445777777777  799999987 5544

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B

Probab=84.77  E-value=0.086  Score=50.63  Aligned_cols=51  Identities=18%  Similarity=0.051  Sum_probs=29.5

Q ss_pred             cccccccCC-Ccccc--ccccCcccCCCCccc-hhccccccccCCcccccccCCCceeEe
Q 022791          127 LIPCAIDQD-PYFRM--TRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       127 ~vpvG~DQ~-~h~el--aR~ia~r~n~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +..+|.|+. +|++.  +.-.|- +|.+.|.. +++.+|.. +|  +|||||.+| .|.+
T Consensus       223 ih~gG~Dl~fpH~~~~~aq~~a~-~g~~~~~~~~h~g~v~~-~G--~KMSKS~GN-~v~~  277 (461)
T 1li5_A          223 IHGGGSDLMFPHHENEIAQSTCA-HDGQYVNYWMHSGMVMV-DR--EKMSKSLGN-FFTV  277 (461)
T ss_dssp             EEECBGGGTTTHHHHHHHHHHHH-SSSCCEEEECCBCCEEE-TT--BCCCGGGTC-CCBH
T ss_pred             EEeccCccCchHHHHHHHHHHHh-cCCCCCcEEEEeeEEEE-CC--eEccccCCC-ccCh
Confidence            457799976 45432  222221 46554533 44566543 55  799999986 5554

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}

Probab=84.70  E-value=0.053  Score=51.34  Aligned_cols=52  Identities=21%  Similarity=0.126  Sum_probs=20.4

Q ss_pred             cccccccCCC-ccccccccCccc-CCCCcc-chhc-cccccccCCcccccccCCCceeEe
Q 022791          127 LIPCAIDQDP-YFRMTRDVAPRI-GYHKPA-LIES-SFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       127 ~vpvG~DQ~~-h~elaR~ia~r~-n~~~p~-~l~~-~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +.++|.|+.. |++...-...-+ |.+.+. .+.+ .+|. ++|  +|||||..| .|.+
T Consensus       247 i~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G--~KMSKS~GN-~v~~  302 (414)
T 3c8z_A          247 IQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDG--HKMSKSRGN-LVLV  302 (414)
T ss_dssp             EEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-----------------CBH
T ss_pred             EEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCC--eEcccccCC-cCCH
Confidence            5678999876 666543333332 553332 3333 4543 466  799999986 5554

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1

Probab=83.35  E-value=0.059  Score=52.56  Aligned_cols=48  Identities=25%  Similarity=0.379  Sum_probs=23.1

Q ss_pred             cccccCCC-c--cccccccC-cccCCCCccchhccccccccCCcccccccCCC
Q 022791          129 PCAIDQDP-Y--FRMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPN  177 (292)
Q Consensus       129 pvG~DQ~~-h--~elaR~ia-~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~  177 (292)
                      ++|.|+.. |  .....+++ .-+|.+.|..+++++|.. .|.++|||||.+|
T Consensus       235 ~~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~-~g~g~KmSKs~Gn  286 (523)
T 1irx_A          235 PAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGI-KGQKGKMSGSKGN  286 (523)
T ss_dssp             CEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEE-SCC---------C
T ss_pred             CCCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEe-CCCCCCCCCcCCC
Confidence            66888766 2  11224444 467877787777777765 3223899999986

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}

Probab=83.15  E-value=0.53  Score=45.55  Aligned_cols=68  Identities=15%  Similarity=0.077  Sum_probs=47.6

Q ss_pred             ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeE-ec---CCHHHHHHHhhh
Q 022791          126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VT---DSAKAIKNKINK  195 (292)
Q Consensus       126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~---D~~~~I~kKI~k  195 (292)
                      |+|.-|.|....---=..+.+.||.+.|...+.|+|.+-+|  +||||.++..+|. +-   =.|+.|..-+..
T Consensus       222 ThViRG~D~l~~tprq~~l~~aLG~~~P~f~HlpLi~~~~g--~KLSKR~g~~sl~~~r~~G~~peal~n~l~~  293 (490)
T 4g6z_A          222 THVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQG--EKMSKRHGAMSVMGYRDAGYLPEAVLNYLAR  293 (490)
T ss_dssp             CEEEEEGGGGGGHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCTTTTCCBHHHHHHTTCCHHHHHHHHHT
T ss_pred             CEEEeccccccChHHHHHHHHHcCCCCCeEEEecceeCCCC--CcccCCCCCcCHHHHHHCCCCHHHHHHHHHH
Confidence            57778888765543344456678999998888899998887  7999998643331 11   147777777665

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A

Probab=83.07  E-value=0.091  Score=51.55  Aligned_cols=52  Identities=17%  Similarity=0.156  Sum_probs=28.9

Q ss_pred             cccccccCCCcc-ccccccCcccCCCCccchh-ccccccccCCcccccccCCCceeEe
Q 022791          127 LIPCAIDQDPYF-RMTRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       127 ~vpvG~DQ~~h~-elaR~ia~r~n~~~p~~l~-~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +-.+|.||..++ .+=-.+...+|++.|..+. +.++.. +|  +|||||.+| .|.+
T Consensus       303 ~~~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~-~G--~KMSKS~GN-vv~p  356 (560)
T 3h99_A          303 YHFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTV-NG--AKMSKSRGT-FIKA  356 (560)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEE-TT--EECCTTTTC-CCBH
T ss_pred             EEEeccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEe-CC--eeccccCCC-cCCH
Confidence            345688987721 1110111224556664433 555543 65  799999987 6654

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}

Probab=81.76  E-value=0.18  Score=52.79  Aligned_cols=56  Identities=20%  Similarity=0.067  Sum_probs=31.8

Q ss_pred             CCCcccccccccccCCC-ccccccccCcc-cCC-CCc-cchhccccccccCCcccccccCCCceeEe
Q 022791          120 GKDHLRCLIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       120 ~~ad~~~~vpvG~DQ~~-h~elaR~ia~r-~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +.+|   +...|.||.. |+...+-...- ++. +-| ..+++.++.. +|  +|||||.+| .|.+
T Consensus       602 ~P~D---i~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p  661 (967)
T 1wz2_A          602 YPLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNF  661 (967)
T ss_dssp             CSCS---EEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SS--SCCCTTTCC-CCBH
T ss_pred             CCCe---EEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CC--EEccccccC-CCCH
Confidence            4566   4579999965 43433221111 222 223 3445666654 65  799999987 5554

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}

Probab=80.72  E-value=0.18  Score=51.69  Aligned_cols=57  Identities=19%  Similarity=0.062  Sum_probs=32.0

Q ss_pred             CCCcccccccccccCCC-ccccccccCcc-cCC-CCc-cchhccccccccCCcccccccCCCceeEec
Q 022791          120 GKDHLRCLIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVT  183 (292)
Q Consensus       120 ~~ad~~~~vpvG~DQ~~-h~elaR~ia~r-~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  183 (292)
                      +.+|   +..+|.||.. |+...+-...- ++. +-| ..+++.+|.. +|  +|||||.+| .|.+.
T Consensus       602 ~p~D---i~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p~  662 (810)
T 1wkb_A          602 YPLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNFI  662 (810)
T ss_dssp             CSCS---EEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TT--BCCCTTTTC-CCBHH
T ss_pred             CCce---EEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CC--eehhhcCCC-cCCHH
Confidence            4555   4579999976 54443221111 221 223 3344666553 55  799999987 66543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	292
d1r6ta2	386	c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (	1e-70
d1n3la_	339	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Hum	2e-22
d2ts1a_	319	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bac	5e-22
d1jila_	323	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Sta	1e-14
d1j1ua_	306	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Arc	2e-13

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  221 bits (564), Expect = 1e-70
 Identities = 181/289 (62%), Positives = 229/289 (79%), Gaps = 2/289 (0%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD
Sbjct: 97  IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 156

Query: 61  FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
            DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F
Sbjct: 157 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 216

Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
             +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS
Sbjct: 217 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 276

Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
           +I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+
Sbjct: 277 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 336

Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
           K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 337 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 385

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 339

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (229), Expect = 2e-22
 Identities = 42/283 (14%), Positives = 83/283 (29%), Gaps = 30/283 (10%)

Query: 1   MFTKYLQDA-----FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 55
                   A          +    D+ K  W  L               + + G  + K 
Sbjct: 54  SKIADFLKAGCEVTILFADLHAYLDNMKAPW-ELLELRVSYYENVIKAMLESIGVPLEKL 112

Query: 56  FIFSDFDYVGGAFY-----KNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSF 110
                 DY     Y     +    V +  +      +        +  + +P +QA+   
Sbjct: 113 KFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEE 172

Query: 111 PSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGK 170
                                IDQ   F       P +GY K   + +   P L     K
Sbjct: 173 YLKV-----------DAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLT--GSK 219

Query: 171 MSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE- 229
           MS+S+  S I + D  + +K K+ K     G            ++   +  +++    E 
Sbjct: 220 MSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEK 279

Query: 230 -----DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 267
                       ++K++ A  +  G++K  +   L +L++  +
Sbjct: 280 WGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIR 322

>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 319

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

 Score = 91.7 bits (227), Expect = 5e-22
 Identities = 33/281 (11%), Positives = 76/281 (27%), Gaps = 25/281 (8%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
           +  +  Q A   P+ +           +    E    A+E  +   A   +    F+  +
Sbjct: 53  LTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFE 112

Query: 61  FDY------VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPV-QAVPSFPSS 113
            D           +   +  +       K   +     ++ +       +     S+   
Sbjct: 113 ADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMML 172

Query: 114 FPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA 173
             + F                D +  +T  +         A       P +    G    
Sbjct: 173 QAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFG 232

Query: 174 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDA 232
              +  I++                     S     +   N +    ++YL +F      
Sbjct: 233 KTESGTIWLDKEKT----------------SPYEFYQFWINTDDRDVIRYLKYFTFLSKE 276

Query: 233 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 273
           E+E +++E           ++ LA+ +T+LV   +  R A+
Sbjct: 277 EIEALEQELREAPEKR-AAQKTLAEEVTKLVHGEEALRQAI 316

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Length = 323

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 70.6 bits (172), Expect = 1e-14
 Identities = 30/279 (10%), Positives = 77/279 (27%), Gaps = 24/279 (8%)

Query: 1   MFTKYLQDA--FKVPLVIQLTDDEKCM-WKNLSVEESQRLARENAKDIIACGFDVTKTFI 57
           +  +  Q+     + L+   T        K+           +   + I+        F 
Sbjct: 54  LTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFG 113

Query: 58  FSDFDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTG-EDHIGKVSFPPVQAVPSFPSSF 114
                 +     +   +  ++    Y K VG+    G +    ++         ++    
Sbjct: 114 TDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQ 173

Query: 115 PHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSAS 174
              F   +            D +  +T  +      +          P +    GK    
Sbjct: 174 AIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGK 233

Query: 175 DPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDAE 233
             + A+++                   + S     +   N   +  +K+L +F      E
Sbjct: 234 SESGAVWLDAE----------------KTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEE 277

Query: 234 LEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 272
           ++ +++       L  E ++ LA+ +T+ +        A
Sbjct: 278 IDRLEQSKNEAPHLR-EAQKTLAEEVTKFIHGEDALNDA 315

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 306

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 67.3 bits (163), Expect = 2e-13
 Identities = 40/274 (14%), Positives = 83/274 (30%), Gaps = 27/274 (9%)

Query: 1   MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
                LQ+A    ++I L D    + +   ++E +++   N K   A G      +    
Sbjct: 50  KKMIDLQNA-GFDIIILLADLHAYLNQKGELDEIRKIGDYNKKVFEAMGLKAKYVYGSEF 108

Query: 61  FDYVGGA-FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 119
                       +          + + +     E+        P               +
Sbjct: 109 QLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYP-----------IMQVN 157

Query: 120 GKDHLRCL-IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
              +L        ++Q     + R+    +   K   I +     L GE     +S   +
Sbjct: 158 DIHYLGVDVAVGGMEQRKIHMLARE----LLPKKVVCIHNPVLTGLDGE--GKMSSSKGN 211

Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRK-----LGANLEVDIPVKYLSFFLEDDAE 233
            I V DS + I+ KI K     G        +     L   L +  P K+          
Sbjct: 212 FIAVDDSPEEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDL--TVNS 269

Query: 234 LEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 267
            E ++  +    +   ++K  +A+ L +++E  +
Sbjct: 270 YEELESLFKNKELHPMDLKNAVAEELIKILEPIR 303

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	292
d1r6ta2	386	Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo	100.0
d1i6la_	326	Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste	100.0
d1n3la_	339	Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie	100.0
d1j1ua_	306	Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc	100.0
d1h3fa1	343	Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi	100.0
d1jila_	323	Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au	99.95
d2ts1a_	319	Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth	99.93
d1ffya3	450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	93.04
d1ivsa4	425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	90.49
d1irxa2	317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	88.92
d1ilea3	452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	88.59
d2d5ba2	348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	88.09
d1nzja_	286	Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c	87.39
d1j09a2	305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	86.76
d1iq0a2	370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	81.03

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-71  Score=523.17  Aligned_cols=285  Identities=62%  Similarity=1.063  Sum_probs=269.4

Q ss_pred             chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch--hhhHhHHHhhhhe
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG--AFYKNMVKVAKCV   79 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~--~~~~~~~~l~r~~   79 (292)
                      +++|+|++.|+.++|+|||+||+++++.+++++++++++++++|+|||+||+|++||.||+|..+  +||.++.+++|++
T Consensus        98 ~~~~~q~~~~~~v~i~iaD~~a~~~~~~~~~e~~~~~~e~~~~~lA~GlDp~kt~i~~~s~~~~~l~~~~~~~~~l~r~~  177 (386)
T d1r6ta2          98 FTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHV  177 (386)
T ss_dssp             HHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHGGGCTTHHHHHHHHHHTC
T ss_pred             HHHHHHHhcccceEEEecchHhhhcccCCHHHHHHHHHHHHHHHHHhCCCccceEEEeCcHHHHHHHHHHHHHHHHHHhc
Confidence            67899998899999999999999986689999999999999999999999999999999998753  7899999999999


Q ss_pred             eecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcc
Q 022791           80 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS  159 (292)
Q Consensus        80 t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~  159 (292)
                      |++++++++|+.++.|+|+++||+|||||+|+.+++.++.++.+.+|+||||.||+||+++|||+|+|||+++|.+++++
T Consensus       178 t~~~~k~~~~~~~~~~~g~~~YP~lQaaDil~~~~d~~~~~~~~~~~lvpvG~DQ~~h~~ltRDia~r~~~~~p~~l~~~  257 (386)
T d1r6ta2         178 TFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHST  257 (386)
T ss_dssp             BHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEEC
T ss_pred             chhHHHHhhccccCCcCcccccHHHHHHHHHHhcChhhhccccccccccccchhHHHHHHHHHHHHHHhCCCCceeeccc
Confidence            99999999999999999999999999999988888888888888889999999999999999999999999999999999


Q ss_pred             ccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCC-cccHHHHHHhCCCccccccchhhhhhccChHHHHHHH
Q 022791          160 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG-QESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK  238 (292)
Q Consensus       160 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~-~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~  238 (292)
                      ++|||+|+++|||||+|+|+|+|+|+|++|++||++ |+|++ +.+.+++++.||||+.++++.|+.+|..+++++++++
T Consensus       258 ~lpgL~G~~~KMSsS~~~s~I~l~D~~~~i~~KI~~-~~~~~~~~~~~e~~~~~g~~~~~v~~~~l~~f~~d~~~~eel~  336 (386)
T d1r6ta2         258 FFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNK-HAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR  336 (386)
T ss_dssp             CCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHH-HSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHH
T ss_pred             cccCCCCcccccccCCCCceeeecCCHHHHHHHhhh-eeeecCCcccccccccCCCcchhHHHHHHHHHcCCHhHHHHHH
Confidence            999999988899999999999999999999999999 66654 5688889999999999999999999987889999999


Q ss_pred             HhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791          239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  287 (292)
Q Consensus       239 ~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~  287 (292)
                      ++|.+|+++|++||+.||+.|+++|+|+|+|+++++++.+++|+..+++
T Consensus       337 ~~y~~G~l~~gd~K~~lae~l~~~l~~~rekr~~~~~~~v~~~l~~~kl  385 (386)
T d1r6ta2         337 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL  385 (386)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCC
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            9999999999999999999999999999999999999899999998875

>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=9.1e-60  Score=437.81  Aligned_cols=259  Identities=20%  Similarity=0.262  Sum_probs=220.3

Q ss_pred             hhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHH
Q 022791            3 TKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV   73 (292)
Q Consensus         3 ~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~   73 (292)
                      .+|  ||+  |+.++|+||||||+|++ .+++++++++++++++|+|||+||++++||.||++++|    |+++   .+.
T Consensus        24 ~~~~~lq~--~~~~~i~iAD~halt~~-~~~~~l~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~~~~el~~~l~~~~~~~  100 (326)
T d1i6la_          24 RQFVELQH--EYNCYFCIVDQHAITVW-QDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIG  100 (326)
T ss_dssp             HHHHHHTT--TSEEEEEECHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHhC--CCCEEEEeehHHhhccC-CCHHHHHHHHHHHHHHhhhhhccccceEEEeecccchHHHHHHHHHhhhhhh
Confidence            466  665  77789999999999974 78999999999999999999999999999999999987    2333   378


Q ss_pred             HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCC-
Q 022791           74 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK-  152 (292)
Q Consensus        74 ~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~-  152 (292)
                      ++.|++++++..+   +.++.|+|+++||+||||        |||.+++|   +||||.||+||+|||||+|+|||+.. 
T Consensus       101 ~l~r~~~~k~~~~---~~~~~~~g~l~YP~lQaA--------DIl~~~~d---~vpvG~DQ~~h~eltRdia~r~n~~~~  166 (326)
T d1i6la_         101 ELERMTQFKEKSA---GKEAVSAGLLTYPPLMAA--------DILLYNTD---IVPVGEDQKQHIELTRDLAERFNKRYG  166 (326)
T ss_dssp             HHHTCHHHHHHHT---TCSSCCHHHHTHHHHHHH--------HHHTTTCS---EEECCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhcccchhhcc---ccccCCccccccccccch--------hHHhcCcc---ccccccchHHHHHHHHHHHHHhhhccC
Confidence            9999999988654   357889999999999999        99999996   79999999999999999999999621 


Q ss_pred             -----c--cch-hccccccccCCcccccccCCC--ceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccch
Q 022791          153 -----P--ALI-ESSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK  222 (292)
Q Consensus       153 -----p--~~l-~~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~  222 (292)
                           |  .+. .+++++++.++++|||||++|  ++|+|+|+|++|++||++ |+||+..+++  +..+++|++++++.
T Consensus       167 ~~~~~~~~~i~~~~~~~~~~~d~~~kmskS~~~~~~~I~l~D~~~~i~kKI~~-a~td~~~~~~--~~~~~~p~~~~l~~  243 (326)
T d1i6la_         167 ELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIR--YDKEAKPGISNLLN  243 (326)
T ss_dssp             SCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH-CCCCSSCCCC--CCTTTCHHHHHHHH
T ss_pred             CcccccccccccccceeeecCCccccccccCCCccceeeccCCHHHHHHHHHh-hhccccCCcc--ccccCCCCccHHHH
Confidence                 2  111 245566665557999999865  689999999999999999 9999976543  45678999999999


Q ss_pred             hhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHhhhccc
Q 022791          223 YLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR  285 (292)
Q Consensus       223 ~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~-~l~~~l~~~  285 (292)
                      ++..++  +.+.+++..+|..  .++++||+.|++.|+++|+|||+||+++.++ +|+++|.+|
T Consensus       244 i~~~~~--~~~~~e~~~~~~~--~~~gdlK~~lae~i~~~L~PiRer~~~l~~~~~l~~iL~~G  303 (326)
T d1i6la_         244 IYSTLS--GQSIEELERQYEG--KGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEG  303 (326)
T ss_dssp             HHHHHH--CCCHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHH
T ss_pred             HHHHcC--CCcHHHHHHHhcC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHHHH
Confidence            999884  4578888888863  5899999999999999999999999999876 899998865

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-53  Score=392.33  Aligned_cols=259  Identities=18%  Similarity=0.194  Sum_probs=203.4

Q ss_pred             chhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHHH----hchhhhhhccCCCCceeEecCCcccch-hhhHhHHHh
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLAR----ENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKV   75 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~----~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l   75 (292)
                      .++|+|++ |+.++|+||||||+++++ .+.+....+..    .+.+.|.|+|+||+++.||.||+|..+ .||..++++
T Consensus        55 ~l~~~q~~-g~~~~~~IaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~d~~k~~i~~~sd~~~~~~~~~~~~~~  133 (339)
T d1n3la_          55 KIADFLKA-GCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRL  133 (339)
T ss_dssp             HHHHHHHT-TCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHH
T ss_pred             HHHHHHHC-CCcEEEEecchhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhccChHHheeeecChHhhhhhHHHHHhhH
Confidence            35679985 999999999999999765 34444333332    334567799999999999999999754 677778888


Q ss_pred             hhheeecceeec----cccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCC
Q 022791           76 AKCVTYNKVVGI----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH  151 (292)
Q Consensus        76 ~r~~t~~~~~~~----~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~  151 (292)
                      ++.++..+....    .+..++.++|+|+||+||||        |||.+++|   +||||.||+||+++||++|+|||.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~g~f~YP~lQaa--------Dil~~~ad---~v~~G~DQ~~~i~l~rd~a~r~~~~  202 (339)
T d1n3la_         134 SSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQAL--------DEEYLKVD---AQFGGIDQRKIFTFAEKYLPALGYS  202 (339)
T ss_dssp             HTTSCHHHHHHHTTTTSCCCSSCCHHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCC
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCccccccccHHHHH--------HHHhccCC---ccccchhHHHHHHHHHHHHhhhccC
Confidence            888877655433    24456788999999999999        99999996   8999999999999999999999999


Q ss_pred             CccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCcccc----ccchhhhhh
Q 022791          152 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD----IPVKYLSFF  227 (292)
Q Consensus       152 ~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~----~~~~~l~~~  227 (292)
                      +|..+++|++|||+|  .|||||+|+++|+|+|+|++|++||++ |+||+...       .+||...    ++|.++..+
T Consensus       203 ~~~~l~~pll~~l~g--~kmsks~~~~~I~l~D~~~~I~kKI~~-a~td~~~~-------~~~~~~~~~~~~~~~~~~~~  272 (339)
T d1n3la_         203 KRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLKK-AFCEPGNV-------ENNGVLSFIKHVLFPLKSEF  272 (339)
T ss_dssp             CCEEEEECCCCCSSC--C-------CCSCBTTCCHHHHHHHHHT-CCCCTTCC-------SSCHHHHHHHHTTGGGTTCE
T ss_pred             cceeeeecccccccc--ccccccchhhcccccCCHHHHHHHHhh-ccCCCCCc-------ccCccccchhhhccchhhcc
Confidence            999999999999999  699999999999999999999999999 99998653       3444332    233333222


Q ss_pred             cc----------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhccc
Q 022791          228 LE----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR  285 (292)
Q Consensus       228 ~~----------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~  285 (292)
                      ..          +++++++++++|.+|+++++++|++||++|+++|+|||++++.   .++++++.++
T Consensus       273 ~~~~~~~~~~~~~~~~~~el~~~y~~g~l~~~dlK~~la~~i~~~l~pire~~~~---~e~~~l~~~~  337 (339)
T d1n3la_         273 VILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFNT---PALKKLASAA  337 (339)
T ss_dssp             EECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHHH
T ss_pred             ccccHHHhcCCCCcCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHhcc
Confidence            11          3467999999999999999999999999999999999999952   2566666554

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=9.1e-51  Score=374.01  Aligned_cols=240  Identities=20%  Similarity=0.239  Sum_probs=186.1

Q ss_pred             chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhheee
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY   81 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~   81 (292)
                      .++|||+. |+.++|+||||||+++++.+++.+++++.++++.|+|+|+||+. +++.+ .+....++..+.++++.+++
T Consensus        51 ~~~~lq~~-g~~~~~~IaD~~a~~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~-~~~~~-~~~~~~~~~~~~~l~~~~~~  127 (306)
T d1j1ua_          51 KMIDLQNA-GFDIIILLADLHAYLNQKGELDEIRKIGDYNKKVFEAMGLKAKY-VYGSE-FQLDKDYTLNVYRLALKTTL  127 (306)
T ss_dssp             HHHHHHHT-TEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCCEE-EEGGG-TTTSHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHC-CCcEEEEeccHHHHhhhccchhhhhhhhhHHHHHHHhhhccccc-cccch-hhhhhhHHHhhhhhhhhhhh
Confidence            35679996 99999999999999987689999999999999999999999952 22222 22233555555566666666


Q ss_pred             cceeeccc----cCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchh
Q 022791           82 NKVVGIFG----FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIE  157 (292)
Q Consensus        82 ~~~~~~~g----~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~  157 (292)
                      +++.+...    ..++.++|+|+||+||||        ||+.++++   +||||.||++|++++|+++++    +|.+++
T Consensus       128 ~~~~~~~~~~~r~~~~~~~~~~~YP~lQaa--------Dil~~~~~---~~~~G~DQ~~~~~l~rdl~~~----~~~~~~  192 (306)
T d1j1ua_         128 KRARRSMELIAREDENPKVAEVIYPIMQVN--------DIHYLGVD---VAVGGMEQRKIHMLARELLPK----KVVCIH  192 (306)
T ss_dssp             HHHHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHHSSS----CCEEEE
T ss_pred             hhhhhhhhhhhhhhhccccccccccchhhc--------chhhcCcc---eeccchhhHHHHHHhhhcccc----cceecc
Confidence            65544321    246789999999999999        99999985   899999999999999999984    678888


Q ss_pred             ccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhh----------hhh
Q 022791          158 SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL----------SFF  227 (292)
Q Consensus       158 ~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l----------~~~  227 (292)
                      +++||||+|. +|||||.+ |+|+|+|+|++|++|||+ |+||++..       ++||.......++          .+.
T Consensus       193 ~~~l~gldG~-~KMSKS~~-n~I~L~D~~e~I~~KI~~-a~td~~~~-------~~~p~~~~~~~~~~~~~~~~~~~~~~  262 (306)
T d1j1ua_         193 NPVLTGLDGE-GKMSSSKG-NFIAVDDSPEEIRAKIKK-AYCPAGVV-------EGNPIMEIAKYFLEYPLTIKRPEKFG  262 (306)
T ss_dssp             ECCCCCTTCC-C--------CSCBTTCCHHHHHHHHHH-SCCCTTCC-------TTCHHHHHHHHTCCSSEEECCCGGGT
T ss_pred             cccccCcccc-cccccccc-cccccCCCHHHHHHHHhh-eeccCCcc-------cCCCchHHHHHhhcccHhhccHHHHh
Confidence            9999999994 79999975 599999999999999999 99998753       3444332211111          111


Q ss_pred             c-cChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 022791          228 L-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVA  269 (292)
Q Consensus       228 ~-~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~  269 (292)
                      . .++.+++++++.|++|+++|++||+.||+.|+++|+|||+|
T Consensus       263 ~~~~~~~~~el~~~~~~g~l~~~~~K~~lae~i~~~l~pirer  305 (306)
T d1j1ua_         263 GDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIRKR  305 (306)
T ss_dssp             CCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            1 14568999999999999999999999999999999999997

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3e-40  Score=307.91  Aligned_cols=226  Identities=16%  Similarity=0.151  Sum_probs=162.5

Q ss_pred             chhhHHhhcCcceEEEeecccccccccc---------CHHHHHHHHHhchhhhh-hccCCCCceeEecCCcccchhhhHh
Q 022791            2 FTKYLQDAFKVPLVIQLTDDEKCMWKNL---------SVEESQRLARENAKDII-ACGFDVTKTFIFSDFDYVGGAFYKN   71 (292)
Q Consensus         2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~---------~~~~i~~~~~~~~~~~l-A~Gldp~k~~i~~qs~~~~~~~~~~   71 (292)
                      +++|||+. |+.++++||||||+++++.         +.+.+.++....+.... ..+.++....|+.+++|..+..|..
T Consensus        57 ~~~~lq~~-g~~~~~~iad~~a~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  135 (343)
T d1h3fa1          57 KMRQFQEL-GHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKE  135 (343)
T ss_dssp             HHHHHHHT-TCEEEEEECCCC---------------------HHHHHHHHHHHTTTSCCCTTTEEEEETHHHHTTCBHHH
T ss_pred             HHHHHHHC-CCceEEEEechhhhhhcccchhhhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhheechHHHhhhhHHH
Confidence            56789995 9999999999999997531         12333444433333333 2344566678888888766544444


Q ss_pred             HHHhhhheeecceee------ccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccC
Q 022791           72 MVKVAKCVTYNKVVG------IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA  145 (292)
Q Consensus        72 ~~~l~r~~t~~~~~~------~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia  145 (292)
                      +.+..+.++++...+      +.....+.++|+|+||+||||        ||+.+++|   +||||.||+||+++|||+|
T Consensus       136 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~YP~lQaa--------Di~~l~~~---~vp~G~DQ~~~i~l~Rdla  204 (343)
T d1h3fa1         136 VVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAY--------DSVAIRAD---VEMGGTDQRFNLLVGREVQ  204 (343)
T ss_dssp             HHHHHTTSBHHHHTTSHHHHHHHHTTCCCBGGGGTHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHHH
T ss_pred             HHHhcccceecchhhhhhhhhcccccccccchhhhhHHHHhh--------hhhhhccc---ccccccchHHHHHHHHHHH
Confidence            444455555444433      333345678999999999999        99999985   8999999999999999999


Q ss_pred             cccCCCCccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhh
Q 022791          146 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS  225 (292)
Q Consensus       146 ~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~  225 (292)
                      +|||+.+|..+++|+||||+|. +|||||.+ |+|||+|+|++|++||++ + +|                 +.+..|+.
T Consensus       205 ~r~~~~~~~~~~~p~L~gldG~-~KMSKS~~-naI~L~dsp~~i~~Ki~~-~-~D-----------------~~v~~~~~  263 (343)
T d1h3fa1         205 RAYGQSPQVCFLMPLLVGLDGR-EKMSKSLD-NYIGLTEPPEAMFKKLMR-V-PD-----------------PLLPSYFR  263 (343)
T ss_dssp             HHTTCCCCEEEEECCCBCTTSS-SBCCGGGT-CCCBTTSCHHHHHHHHHT-S-CG-----------------GGHHHHHH
T ss_pred             hhcCccccceeecccccccccc-chhhcccc-cceeeechhHHHHHHHhc-C-Cc-----------------cchhhHHH
Confidence            9999999999999999999994 79999976 599999999999999999 4 22                 12456778


Q ss_pred             hhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHH
Q 022791          226 FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER  265 (292)
Q Consensus       226 ~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~p  265 (292)
                      +|+.  .+.+||++-+..   ++.++|+.||+.|+..++.
T Consensus       264 ~~t~--~~~~ei~~~~~~---~~~~~k~~La~~i~~~~~~  298 (343)
T d1h3fa1         264 LLTD--LEEEEIEALLKA---GPVPAHRVLARLLTAAYAL  298 (343)
T ss_dssp             HHCC--CCHHHHHHHHHH---CHHHHHHHHHHHHHHHHHS
T ss_pred             HccC--CCHHHHHHHHHh---CCHHHHHHHHHHHHHHHcC
Confidence            7743  234555555543   4789999999999988764

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.95  E-value=5.2e-29  Score=229.06  Aligned_cols=232  Identities=13%  Similarity=0.138  Sum_probs=178.8

Q ss_pred             CchhhHHhhcCcceEEEeecccccccc--------c-cCHHHHHHHHHhchhhh---hhccCCCCceeEecCCcccchhh
Q 022791            1 MFTKYLQDAFKVPLVIQLTDDEKCMWK--------N-LSVEESQRLARENAKDI---IACGFDVTKTFIFSDFDYVGGAF   68 (292)
Q Consensus         1 ~~~~~lQ~~~g~~~~I~iaD~hA~~~~--------~-~~~~~i~~~~~~~~~~~---lA~Gldp~k~~i~~qs~~~~~~~   68 (292)
                      ++++|||++ |+.++++|+|+||++++        + .+.+.+++|...+...+   +.+ .++.++.|..+++|....-
T Consensus        54 ~~l~~~q~~-Gh~~i~LiG~~T~~iGDPsgk~~~R~~l~~~~i~~n~~~~~~~~~~~~~~-~~~~~~~i~~n~~w~~~~~  131 (323)
T d1jila_          54 LTLRRFQEH-GHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEF-GTDHGAVLVNNRDWLGQIS  131 (323)
T ss_dssp             HHHHHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHHSCC-SSSSSCEEEETHHHHTTCC
T ss_pred             HHHHHHHHh-CCceEEeehhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhhhhhhhc-ccccceEEechhhhhccch
Confidence            468999995 99999999999999964        2 57788888876555544   343 2456788888887765422


Q ss_pred             hHh-HHHhhhheeecceeecccc----CCCCccccccCCccccCCCCCCCCCcccc----CCCcccccccccccCCCccc
Q 022791           69 YKN-MVKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFS----GKDHLRCLIPCAIDQDPYFR  139 (292)
Q Consensus        69 ~~~-~~~l~r~~t~~~~~~~~g~----~~~~~~g~l~YP~lqaad~~~~~~~Dil~----~~ad~~~~vpvG~DQ~~h~e  139 (292)
                      +.. +-.+++++|++.+.++..+    ..+.++.+|+||+||+.        |++.    +++|   +..+|.||+.++.
T Consensus       132 ~~~~l~~~~~~~~v~~ml~~d~~~~R~~~~is~~Ef~YpllQ~~--------Df~~l~~~~~~~---iqiGGsDQ~~Ni~  200 (323)
T d1jila_         132 LISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAI--------DFGHLNRELNCK---IQVGGSDQWGNIT  200 (323)
T ss_dssp             HHHHHHHTGGGCCHHHHHTCGGGHHHHTTTCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHH
T ss_pred             HHHHHHHHhhhhhhhHHHHhHHHHHHhcccccHhhHHHHHHHHH--------HHHHHHHHhhch---hhhhccccHHHhh
Confidence            223 3345666666665544211    35678999999999999        7754    5665   6789999999999


Q ss_pred             cccccCccc-CCCCccchhccccccccCCcccccccCCCceeEecC---CHHHHHHHhhhccccCCcccHHHHHHhCCCc
Q 022791          140 MTRDVAPRI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANL  215 (292)
Q Consensus       140 laR~ia~r~-n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p  215 (292)
                      .+|++++|+ |.+++.+++.|++.+.+|  +|||||.+| +|++.+   ||+++++|+++ .      +           
T Consensus       201 ~Grdl~~~~~~~~~~~~it~pLl~~~~G--~Km~KS~~n-~i~l~~~~tsP~~~y~k~~n-~------~-----------  259 (323)
T d1jila_         201 SGIELMRRMYGQTDAYGLTIPLVTKSDG--KKFGKSESG-AVWLDAEKTSPYEFYQFWIN-Q------S-----------  259 (323)
T ss_dssp             HHHHHHHHHHCCCCCEEEEECCCBCTTS--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C------C-----------
T ss_pred             hhhhhhhhhcccccceEEecccccchhh--hhhhhcCCC-CeeeecccCChHHHHHHhhc-C------C-----------
Confidence            999999997 556666777899999988  799999875 999987   69999999999 2      1           


Q ss_pred             cccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHH
Q 022791          216 EVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQV  268 (292)
Q Consensus       216 ~~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~  268 (292)
                       .+.+..|+.+|+. +.+++++|++.+..| .++.++|+.||+.|++.++.-..
T Consensus       260 -D~~i~~yl~~~T~l~~~ei~~l~~~~~~~-~~pr~~Kk~LA~ei~~~~HG~~~  311 (323)
T d1jila_         260 -DEDVIKFLKYFTFLGKEEIDRLEQSKNEA-PHLREAQKTLAEEVTKFIHGEDA  311 (323)
T ss_dssp             -HHHHHHHHHHHCCCCHHHHHHHHHHHHHC-GGGCHHHHHHHHHHHHHHHCHHH
T ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHCCHHH
Confidence             2345578888764 678899999998866 59999999999999999987433

>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=99.93  E-value=1.4e-27  Score=218.95  Aligned_cols=235  Identities=14%  Similarity=0.138  Sum_probs=187.6

Q ss_pred             CchhhHHhhcCcceEEEeecccccccc--------c-cCHHHHHHHHH---hchhhhhhccCCCCceeEecCCcccch-h
Q 022791            1 MFTKYLQDAFKVPLVIQLTDDEKCMWK--------N-LSVEESQRLAR---ENAKDIIACGFDVTKTFIFSDFDYVGG-A   67 (292)
Q Consensus         1 ~~~~~lQ~~~g~~~~I~iaD~hA~~~~--------~-~~~~~i~~~~~---~~~~~~lA~Gldp~k~~i~~qs~~~~~-~   67 (292)
                      ++++|||+. |+.++++|+|.|+.+++        + .+.+.+++|+.   +.+..+++.+.+++++.|+.+++|... .
T Consensus        53 ~~l~~~q~~-Gh~~i~LiG~~T~~IGDPsgk~~eR~~l~~e~i~~n~~~~~~q~~~~~~~~~~~~~~~iv~N~~w~~~~~  131 (319)
T d2ts1a_          53 LTMRRFQQA-GHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLD  131 (319)
T ss_dssp             HHHHHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCC
T ss_pred             HHHHHHHHc-CCceeEEeeehhhccCCCcccchhhhcCCHHHHHHHHHHHHHHHHHhhcccccccccceeehHHHHhhHH
Confidence            478999995 99999999999999964        2 56778888775   666677888889999999999888654 3


Q ss_pred             hhHhHHHhhhheeecceeeccc----cCCCCccccccCCccccCCCCCCCCCccccC----CCcccccccccccCCCccc
Q 022791           68 FYKNMVKVAKCVTYNKVVGIFG----FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFR  139 (292)
Q Consensus        68 ~~~~~~~l~r~~t~~~~~~~~g----~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~e  139 (292)
                      ++..+..+.+.+|+.++.++..    ...+.++..|+||+||+.        |.+.+    +++   +..+|.||+.++.
T Consensus       132 ~~~~l~~~g~~~tv~~ml~rd~v~~R~~~~is~~Ef~Y~llQay--------Df~~l~~~~~~~---~qiGGsDQ~gNi~  200 (319)
T d2ts1a_         132 VITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAY--------DFLRLYETEGCR---LQIGGSDQWGNIT  200 (319)
T ss_dssp             HHHHHHHTGGGCCHHHHHTSHHHHTTTTTCCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHH
T ss_pred             HHHHHHHHccccchhhhhhhHHHHHhcccCcchhhhHHHHHHHH--------HHHHHhhccCCc---hhhccchhhhHHH
Confidence            4444445677777776655421    135688999999999999        77766    664   7899999999999


Q ss_pred             cccccCcccCC-CCccchhccccccccCCcccccccCCCceeEecC---CHHHHHHHhhhccccCCcccHHHHHHhCCCc
Q 022791          140 MTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANL  215 (292)
Q Consensus       140 laR~ia~r~n~-~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p  215 (292)
                      .+|++.++++. ..+..++.|.|++.+|  +|||||..| +|+|++   ||.++++|+++ .      +           
T Consensus       201 ~G~dli~~~~~~~~~~~lT~PLL~~~~G--~K~~ks~~n-~i~l~~~~tsp~~~yq~~~n-~------~-----------  259 (319)
T d2ts1a_         201 AGLELIRKTKGEARAFGLTIPLVTKADG--TKFGKTESG-TIWLDKEKTSPYEFYQFWIN-T------D-----------  259 (319)
T ss_dssp             HHHHHHHHHHC--CCEEEEECCCCCTTS--CCTTCCSSC-CCBSSTTTSCHHHHHHHHHT-C------C-----------
T ss_pred             HHHHHHHHhcccccceEeeccccccccc--ceeeecCCC-CcccccccCCHHHHHHHhcC-C------C-----------
Confidence            99999998854 4455688999999998  799999865 899986   69999999999 2      1           


Q ss_pred             cccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 022791          216 EVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVAR  270 (292)
Q Consensus       216 ~~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~  270 (292)
                       .+.+..|+.+|+. +.+++++|.+.+.+| -++.++|+.||+.|+..++.-..-.
T Consensus       260 -D~~v~~yl~~~T~~~~eeI~~i~~~~~~~-~~~r~~K~~LA~eit~l~HG~~~a~  313 (319)
T d2ts1a_         260 -DRDVIRYLKYFTFLSKEEIEALEQELREA-PEKRAAQKTLAEEVTKLVHGEEALR  313 (319)
T ss_dssp             -HHHHHHHHHHHCCCCHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCHHHHH
T ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHH
Confidence             2445678888864 678999999999888 4999999999999999998765544

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.04  E-value=0.0054  Score=56.29  Aligned_cols=57  Identities=30%  Similarity=0.187  Sum_probs=33.4

Q ss_pred             cCCCcccccccccccCCCc-c--ccccccCcccCCCCc-cchhccccccccCCcccccccCCCceeEe
Q 022791          119 SGKDHLRCLIPCAIDQDPY-F--RMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       119 ~~~ad~~~~vpvG~DQ~~h-~--elaR~ia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      .+.+|   +...|.||... +  .+..-++ -.|.+.+ .++.+.++...+|  +|||||.+| .|..
T Consensus       352 ~~P~d---~~~~G~Di~r~w~~~~~~~~~~-~~~~~Pfk~v~~hG~vld~~G--~KMSKS~GN-~I~p  412 (450)
T d1ffya3         352 SFPAD---MYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVMDGEG--KKMSKSLGN-VIVP  412 (450)
T ss_dssp             CSSBS---EEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEECTTS--CCCCSSSSC-CCCH
T ss_pred             cCCCc---ccccCcchhhHHHHHHHHHHHH-hcCCCCcceEEEcceEECCCC--CCCCCCCCC-CcCH
Confidence            34555   56789998642 1  1111111 1233333 3445788878887  899999987 6654

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=90.49  E-value=0.019  Score=51.46  Aligned_cols=52  Identities=19%  Similarity=0.191  Sum_probs=29.6

Q ss_pred             cccccccCCCccc---cccccCcccCCCCc--cchhccccccccCCcccccccCCCceeEec
Q 022791          127 LIPCAIDQDPYFR---MTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT  183 (292)
Q Consensus       127 ~vpvG~DQ~~h~e---laR~ia~r~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  183 (292)
                      +...|.|+..++-   ++.-.+- ++ ..|  .++.+.++...+|  +|||||.+| .|.+.
T Consensus       331 i~~~G~Di~~~h~~~~~a~~~~~-~~-~~p~~~v~~hg~~L~~~G--~KMSKS~Gn-~I~~~  387 (425)
T d1ivsa4         331 VLVTGYDILFLWVSRMEVSGYHF-MG-ERPFKTVLLHGLVLDEKG--QKMSKSKGN-VIDPL  387 (425)
T ss_dssp             CEEEEGGGTTTTHHHHHHHHHHH-SS-SCSBSEEEEECCEECTTS--SBCBTTTTB-CCCHH
T ss_pred             EEEEEehhhhHHHHHHHHHHHHh-cC-CCccceEEEcceEECCCC--CCcCCCCCC-CcCHH
Confidence            4577899765442   1111111 12 223  2334667666677  799999987 77653

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Class I lysyl-tRNA synthetase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.92  E-value=0.031  Score=46.58  Aligned_cols=34  Identities=32%  Similarity=0.556  Sum_probs=15.0

Q ss_pred             cCCCCccchhccccccccCCcccccccCCCceeEec
Q 022791          148 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT  183 (292)
Q Consensus       148 ~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  183 (292)
                      ++.+.|.++.+.+| .|+|.++|||||.+| .|.+.
T Consensus       256 ~g~~~~~~~~~~~l-~l~ge~~KMSkrkGn-~I~~~  289 (317)
T d1irxa2         256 YGKEAPLSLMYEFV-GIKGQKGKMSGSKGN-VILLS  289 (317)
T ss_dssp             HCCCCCBCCEECCE-EESCC---------C-CCCHH
T ss_pred             cCCCCcEEEEEEEE-EECCccccccCCCCc-cccHH
Confidence            45566776665543 456655799999987 77653

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

Probab=88.59  E-value=0.019  Score=51.74  Aligned_cols=52  Identities=25%  Similarity=0.169  Sum_probs=29.7

Q ss_pred             cccccccCCC---ccccccccCcccCC-CCccchhccccccccCCcccccccCCCceeEe
Q 022791          127 LIPCAIDQDP---YFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIYV  182 (292)
Q Consensus       127 ~vpvG~DQ~~---h~elaR~ia~r~n~-~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  182 (292)
                      +...|.||..   |..+..-++- .|. |-+.++.+.++..++|  +|||||.+| .|.+
T Consensus       358 ~~~~g~d~~~~~fh~l~~~~~l~-~~~~~~~~v~~hg~iL~~~G--~KMSKS~gn-~I~~  413 (452)
T d1ilea3         358 FIAEGIDQTRGWFNSLHQLGVML-FGSIAFKNVICHGLILDEKG--QKMSKSKGN-VVDP  413 (452)
T ss_dssp             BEEEEGGGGGTHHHHHHHHHHHH-HSSCSBSEEEEECCEECTTS--SCCCTTTTC-CCCH
T ss_pred             hheecCceechhhHHHHHhHHHH-cCCCCCCeEEEeeEEECCCC--cccCCCCCC-CcCH
Confidence            4567888863   2222111111 222 2223445778877887  799999987 6644

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

Probab=88.09  E-value=0.066  Score=45.99  Aligned_cols=28  Identities=25%  Similarity=0.190  Sum_probs=19.9

Q ss_pred             cchhccccccccCCcccccccCCCceeEecC
Q 022791          154 ALIESSFFPALQGETGKMSASDPNSAIYVTD  184 (292)
Q Consensus       154 ~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  184 (292)
                      .++.+..+..++|  +|||||.+| .|.+.|
T Consensus       283 ~v~~~~~~l~~~G--~KMSKS~Gn-~i~~~e  310 (348)
T d2d5ba2         283 HLNVGGFLLGPDG--RKMSKTLGN-VVDPFA  310 (348)
T ss_dssp             EEEEECCEECTTS--SCCCTTTTC-CCCHHH
T ss_pred             EEEeCceEEcccC--CCCcCCCCc-ccCHHH
Confidence            3444566667787  799999987 776643

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-Q tRNA-Asp synthetase YadB
species: Escherichia coli [TaxId: 562]

Probab=87.39  E-value=0.036  Score=47.60  Aligned_cols=68  Identities=16%  Similarity=0.097  Sum_probs=37.9

Q ss_pred             ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhh
Q 022791          126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK  195 (292)
Q Consensus       126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k  195 (292)
                      |+|.-|.|....-..=+.|.+.||.+.|...+.|+|.+.+|  +||||++....|.-.+.+.-+.+-++.
T Consensus       183 ThViRG~D~l~st~~Q~~L~~~lg~~~P~y~H~pli~~~~g--~KLSKr~~~~~i~~~~~~~~~~~~L~~  250 (286)
T d1nzja_         183 TEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--AKLSKQNHAPALPKGDPRPVLIAALQF  250 (286)
T ss_dssp             CEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---------------CCCSSCCHHHHHHHHHH
T ss_pred             ceecccccccchHHHHHHHHHhhCCCccceeecceEEccCC--cccccccCccchhcCCccHHHHHHHHH
Confidence            68999999765444444566788999999999999999888  799999864455444445544444433

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-tRNA synthetase (GluRS)
species: Thermus thermophilus [TaxId: 274]

Probab=86.76  E-value=0.045  Score=47.42  Aligned_cols=68  Identities=9%  Similarity=0.050  Sum_probs=49.3

Q ss_pred             cCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCC
Q 022791          100 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN  177 (292)
Q Consensus       100 ~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~  177 (292)
                      .||..+-|-    .++|++. +.   |+|.-|.|-..+-..=+-+.+.+|.+.|...+++.+...+|  +||||++..
T Consensus       183 g~p~Y~~A~----vvDD~~~-gi---thviRG~Dl~~~t~~q~~l~~~Lg~~~p~~~h~~l~~~~~g--~KLSKr~~~  250 (305)
T d1j09a2         183 GYPTYHLAN----VVDDHLM-GV---TDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDK--TKISKRKSH  250 (305)
T ss_dssp             SCBCHHHHH----HHHHHHT-TC---CEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--CBCCTTTSC
T ss_pred             CCeehHHHH----HHHHHHc-cC---ccccccccceeccHHHHHHHHhhcCCCCceeeecccccCcc--ccccccCCc
Confidence            466666552    1224443 33   58899999777665556677789999999888998889888  899999754

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Thermus thermophilus [TaxId: 274]

Probab=81.03  E-value=0.11  Score=46.09  Aligned_cols=65  Identities=15%  Similarity=0.156  Sum_probs=42.6

Q ss_pred             cccccccCCCccccccccCcccCCCCc----cchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhh
Q 022791          127 LIPCAIDQDPYFRMTRDVAPRIGYHKP----ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK  195 (292)
Q Consensus       127 ~vpvG~DQ~~h~elaR~ia~r~n~~~p----~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k  195 (292)
                      +--+|.+|..|+.....+++.+|++..    .++...+|- ++|  +||||..++ .|.|.|==++..++.+.
T Consensus       254 iyVvd~~Q~~h~~~v~~~~~~~g~~~~~~~~~hv~~g~v~-~~g--~kMStR~G~-~v~l~dll~ea~~~a~~  322 (370)
T d1iq0a2         254 INVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LEG--RQMSGRKGL-AVSVDEVLEEATRRARA  322 (370)
T ss_dssp             EEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ETT--BCSCC-----CCBHHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHhCCCchhhceeeEEEEEEe-cCC--ccccccCCC-eeEHHHHHHHHHHHHHH
Confidence            557899999999999999999998532    233334443 455  899999876 88887655555444443