Citrus Sinensis ID: 022805

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
MVYIPEGEFLSRIGPTEFYKDLEKYASKNAVQDWKKLLDAILPLSATATALPPLSIRGDLGVLSTVAARYAPSLLKSFIQMGPQGALGATKLLRPFSEIVDSLELEDPFGLREDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSELLDAIGI
cEEEccccccccccHHHHHHHHHHHHcHHHHHHHHHHHEEEEccccEEEEEccccEEEcccEEEEcccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccEEEEEccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHcccccccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHcc
ccEccccccccEccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHcHHHHHHHHHccccccccHHHccccHHHHHHHcccccccccccccccEEEEEEcccccccccccEEEEEEcccccccccccccEEEEEEccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccHHHHHHHHcccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHccc
mvyipegeflsrigptefYKDLEKYASKNAVQDWKKLLDAILplsatatalpplsirgdlgvLSTVAARYAPSLLKSFiqmgpqgalgatkllrpfseivdsleledpfglredlgihhivvndwdrgvdadqnVVLIsvpsvlspdlappgkhvlhaytpgtepfelwkgldprsAEYKKLKAERSEVIWRAVERalgpgfsrdkcdvklvgtplthqrflrrnrgtygpaiqagketfpghstpipqlyccgdstfpgigvpavAASGAIVANSLVSVSQHSELLDAIGI
mvyipegeflsrigpTEFYKDLEKYASKNAVQDWKKLLDAILPLSAtatalpplsirgDLGVLSTVAARYAPSLLKSFIQMGPQGALGATKLLRPFSEIVDSLELEDPFGLREDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVEralgpgfsrdkcdvklvgtplthqrflrrnrgtYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSELLDAIGI
MVYIPEGEFLSRIGPTEFYKDLEKYASKNAVQDWKKLLDAILPLSATATALPPLSIRGDLGVLSTVAARYAPSLLKSFIQMGPQGALGATKLLRPFSEIVDSLELEDPFGLREDLGIHHIVVNDWDRGVDADQNvvlisvpsvlspDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSELLDAIGI
******GEFLSRIGPTEFYKDLEKYASKNAVQDWKKLLDAILPLSATATALPPLSIRGDLGVLSTVAARYAPSLLKSFIQMGPQGALGATKLLRPFSEIVDSLELEDPFGLREDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV************
MVYIPEGEFLSRIGPTEFYKDLEKYASKNAVQDWKKLLDAILPLSATATALPPLSIRGDLGVLSTVAARYAPSLLKSF**************LRPFSEIVDSLELEDPFGLREDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKET*PGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSELLDAIGI
MVYIPEGEFLSRIGPTEFYKDLEKYASKNAVQDWKKLLDAILPLSATATALPPLSIRGDLGVLSTVAARYAPSLLKSFIQMGPQGALGATKLLRPFSEIVDSLELEDPFGLREDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSELLDAIGI
MVYIPEGEFLSRIGPTEFYKDLEKYASKNAVQDWKKLLDAILPLSATATALPPLSIRGDLGVLSTVAARYAPSLLKSFIQMGPQGALGATKLLRPFSEIVDSLELEDPFGLREDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSELLDAIGI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVYIPEGEFLSRIGPTEFYKDLEKYASKNAVQDWKKLLDAILPLSATATALPPLSIRGDLGVLSTVAARYAPSLLKSFIQMGPQGALGATKLLRPFSEIVDSLELEDPFGLREDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSELLDAIGI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query292 2.2.26 [Sep-21-2011]
Q52QW3587 Prolycopene isomerase 1, N/A no 0.599 0.298 0.404 3e-26
Q9M9Y8595 Prolycopene isomerase, ch no no 0.551 0.270 0.402 4e-26
Q52QW2587 Prolycopene isomerase 2, N/A no 0.599 0.298 0.404 8e-26
Q2VEX9615 Prolycopene isomerase, ch N/A no 0.585 0.278 0.401 2e-25
Q8S4R4615 Prolycopene isomerase, ch N/A no 0.582 0.276 0.398 4e-25
Q3U4I7580 Pyridine nucleotide-disul yes no 0.520 0.262 0.293 3e-06
Q68FT3581 Pyridine nucleotide-disul yes no 0.506 0.254 0.280 8e-05
Q3MHH6581 Pyridine nucleotide-disul yes no 0.523 0.263 0.271 0.0001
Q8N2H3581 Pyridine nucleotide-disul yes no 0.523 0.263 0.253 0.0005
>sp|Q52QW3|CRTS1_ONCHC Prolycopene isomerase 1, chloroplastic OS=Oncidium hybrid cultivar GN=CRTISO1 PE=2 SV=1 Back     alignment and function desciption
 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 107/188 (56%), Gaps = 13/188 (6%)

Query: 109 FGLREDLGIHHIVVND-WDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFE 167
           F L  D   HH ++ D W R ++     + +S+P+VL P LAP G H+ H +T  T   E
Sbjct: 393 FVLPPDTDCHHFILEDNWGR-LELPYGSIFLSIPTVLDPSLAPEGHHIFHIFT--TSSIE 449

Query: 168 LWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRG 227
            W+GL  +  E KK +    E+I R +E+ L PG  +D   +K VGTP TH+RFL R+ G
Sbjct: 450 NWEGLSHKEYEEKK-ELVADEIITR-LEKKLFPGL-KDSVVLKEVGTPKTHRRFLARDSG 506

Query: 228 TYGPA---IQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS---VS 281
           TYGP    +  G    P ++T I  LYC GDS FPG GV AVA SG + A+ + +   + 
Sbjct: 507 TYGPMPRKVPKGLLGMPFNTTAINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGIE 566

Query: 282 QHSELLDA 289
           + + +LDA
Sbjct: 567 KKAPVLDA 574
Carotene cis-trans-isomerase that converts 7,9,9'-tri-cis-neurosporene to 9'-cis-neurosporene and 7,9,9',7'-tetra-cis-lycopene (also known as prolycopene) into all-trans-lycopene. Isomerization requires redox-active components, suggesting that isomerization is achieved by a reversible redox reaction acting at specific double bonds. Isomerizes adjacent cis-double bonds at C7 and C9 pairwise into the trans-configuration, but is incapable of isomerizing single cis-double bonds at C9 and C9'.
Oncidium hybrid cultivar (taxid: 141207)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 3
>sp|Q9M9Y8|CRTSO_ARATH Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana GN=CRTISO PE=2 SV=2 Back     alignment and function description
>sp|Q52QW2|CRTS2_ONCHC Prolycopene isomerase 2, chloroplastic OS=Oncidium hybrid cultivar GN=CRTISO2 PE=2 SV=1 Back     alignment and function description
>sp|Q2VEX9|CRTSO_DAUCA Prolycopene isomerase, chloroplastic OS=Daucus carota GN=CRTISO PE=2 SV=1 Back     alignment and function description
>sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum GN=CRTISO PE=1 SV=1 Back     alignment and function description
>sp|Q3U4I7|PYRD2_MOUSE Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Mus musculus GN=Pyroxd2 PE=2 SV=2 Back     alignment and function description
>sp|Q68FT3|PYRD2_RAT Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Rattus norvegicus GN=Pyroxd2 PE=2 SV=1 Back     alignment and function description
>sp|Q3MHH6|PYRD2_BOVIN Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Bos taurus GN=PYROXD2 PE=2 SV=1 Back     alignment and function description
>sp|Q8N2H3|PYRD2_HUMAN Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Homo sapiens GN=PYROXD2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
255570972 585 All-trans-retinol 13,14-reductase precur 0.636 0.317 0.903 3e-96
147777848 586 hypothetical protein VITISV_023401 [Viti 0.636 0.317 0.897 2e-95
297739513 570 unnamed protein product [Vitis vinifera] 0.636 0.326 0.887 2e-94
359486245 551 PREDICTED: prolycopene isomerase, chloro 0.636 0.337 0.887 2e-94
224119928 579 predicted protein [Populus trichocarpa] 0.623 0.314 0.906 4e-94
449511591 582 PREDICTED: prolycopene isomerase, chloro 0.636 0.319 0.876 1e-93
449431858 582 PREDICTED: prolycopene isomerase, chloro 0.636 0.319 0.876 2e-93
356522129 558 PREDICTED: prolycopene isomerase, chloro 0.636 0.333 0.854 2e-91
356564426 530 PREDICTED: LOW QUALITY PROTEIN: prolycop 0.636 0.350 0.849 3e-91
297848272 578 hypothetical protein ARALYDRAFT_314966 [ 0.623 0.314 0.854 1e-89
>gi|255570972|ref|XP_002526437.1| All-trans-retinol 13,14-reductase precursor, putative [Ricinus communis] gi|223534217|gb|EEF35932.1| All-trans-retinol 13,14-reductase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 168/186 (90%), Positives = 181/186 (97%)

Query: 107 DPFGLREDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPF 166
           D  G+REDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPF
Sbjct: 400 DAEGIREDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPF 459

Query: 167 ELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNR 226
           ELW+GLD RS+EYK+LKAERSEV+W+AVERA+GPGFSR+KC+VKLVGTPLTH+RFLRRNR
Sbjct: 460 ELWEGLDHRSSEYKQLKAERSEVMWKAVERAIGPGFSREKCEVKLVGTPLTHRRFLRRNR 519

Query: 227 GTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSEL 286
           GTYGPAIQAGK+TFP HSTPI QLYCCGDSTFPGIGVPAVAASGAIVANSLVSV+QHS+L
Sbjct: 520 GTYGPAIQAGKDTFPEHSTPILQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVAQHSQL 579

Query: 287 LDAIGI 292
           LDAIGI
Sbjct: 580 LDAIGI 585

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147777848|emb|CAN60294.1| hypothetical protein VITISV_023401 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297739513|emb|CBI29695.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359486245|ref|XP_002264237.2| PREDICTED: prolycopene isomerase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224119928|ref|XP_002331097.1| predicted protein [Populus trichocarpa] gi|222872825|gb|EEF09956.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449511591|ref|XP_004163999.1| PREDICTED: prolycopene isomerase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449431858|ref|XP_004133717.1| PREDICTED: prolycopene isomerase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356522129|ref|XP_003529702.1| PREDICTED: prolycopene isomerase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356564426|ref|XP_003550455.1| PREDICTED: LOW QUALITY PROTEIN: prolycopene isomerase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|297848272|ref|XP_002892017.1| hypothetical protein ARALYDRAFT_314966 [Arabidopsis lyrata subsp. lyrata] gi|297337859|gb|EFH68276.1| hypothetical protein ARALYDRAFT_314966 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
TAIR|locus:2009395574 AT1G57770 [Arabidopsis thalian 0.636 0.324 0.790 3.4e-126
UNIPROTKB|Q10AT7597 Os03g0841900 "Os03g0841900 pro 0.705 0.345 0.712 3.1e-123
UNIPROTKB|A8J3K3558 CHLREDRAFT_130438 "Predicted p 0.630 0.329 0.591 4.1e-73
UNIPROTKB|A8J7T2566 CHLREDRAFT_176572 "Predicted p 0.75 0.386 0.466 1e-43
TAIR|locus:2033055595 CRTISO "carotenoid isomerase" 0.599 0.294 0.380 1e-23
UNIPROTKB|Q0IS25602 Os11g0572700 "Os11g0572700 pro 0.592 0.287 0.392 4.7e-23
UNIPROTKB|A8J9E9568 CHLREDRAFT_196597 "Carotenoid 0.5 0.257 0.403 1.7e-21
TAIR|locus:2009395 AT1G57770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 784 (281.0 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
 Identities = 147/186 (79%), Positives = 160/186 (86%)

Query:   107 DPFGLREDLGIHHIVVNDWDRGVDADQNXXXXXXXXXXXXDLAPPGKHVLHAYTPGTEPF 166
             D  G+ +DL IHHIVVNDWDRGVDADQN            +LAPPGKHVLHAY PGTEPF
Sbjct:   389 DAEGIADDLEIHHIVVNDWDRGVDADQNVVLISVPSVLSPNLAPPGKHVLHAYCPGTEPF 448

Query:   167 ELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNR 226
              LW+GLD RSAEYK LK++RSEV+WRAVERALG GF R+KC+V LVGTPLTHQRFLRRNR
Sbjct:   449 GLWEGLDRRSAEYKNLKSQRSEVMWRAVERALGLGFKREKCEVSLVGTPLTHQRFLRRNR 508

Query:   227 GTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSEL 286
             GTYGPAI+AGK TFPGHSTPIPQL CCGDSTFPGIGVPAVAASGAIVANSLV VS+HS+L
Sbjct:   509 GTYGPAIEAGKGTFPGHSTPIPQLLCCGDSTFPGIGVPAVAASGAIVANSLVPVSKHSQL 568

Query:   287 LDAIGI 292
             LDAIG+
Sbjct:   569 LDAIGL 574
GO:0005739 "mitochondrion" evidence=ISM
GO:0016117 "carotenoid biosynthetic process" evidence=IBA
GO:0016491 "oxidoreductase activity" evidence=IEA;ISS
GO:0046608 "carotenoid isomerase activity" evidence=IBA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
UNIPROTKB|Q10AT7 Os03g0841900 "Os03g0841900 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8J3K3 CHLREDRAFT_130438 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|A8J7T2 CHLREDRAFT_176572 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
TAIR|locus:2033055 CRTISO "carotenoid isomerase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IS25 Os11g0572700 "Os11g0572700 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8J9E9 CHLREDRAFT_196597 "Carotenoid isomerase" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00035286001
SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (550 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00018857001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (396 aa)
• •   • 0.481
GSVIVG00024765001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (389 aa)
• •   • 0.468
GSVIVG00038863001
SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (370 aa)
  ••  • 0.449
GSVIVG00023494001
SubName- Full=Chromosome undetermined scaffold_30, whole genome shotgun sequence; (437 aa)
• •   • 0.439

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
TIGR02730493 TIGR02730, carot_isom, carotene isomerase 1e-37
COG1233487 COG1233, COG1233, Phytoene dehydrogenase and relat 2e-22
TIGR02734502 TIGR02734, crtI_fam, phytoene desaturase 1e-05
TIGR02733492 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD 2e-04
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase Back     alignment and domain information 
 Score =  138 bits (350), Expect = 1e-37
 Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 21/179 (11%)

Query: 110 GLREDL-----GIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTE 164
           G++ D+       HHI++ DW   ++  Q  + +S+P++L P LAP G H++H +TP + 
Sbjct: 320 GVKADVLPPGTECHHILLEDWTN-LEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSS- 377

Query: 165 PFELWKGLDPRSAEYKKLKAERSEVIWRAVER--ALGPGFSRDKCDVKLVGTPLTHQRFL 222
             E W+GL P+  E KK          R ++R   + PG      D K VGTP TH+RFL
Sbjct: 378 -MEDWQGLSPKDYEAKK-----EADAERIIDRLEKIFPGLDS-AIDYKEVGTPRTHRRFL 430

Query: 223 RRNRGTYGPAIQAGKE----TFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSL 277
            R+ GTYGP I           P + T IP LYC GDS FPG G+ AVA SG   A+ +
Sbjct: 431 GRDSGTYGP-IPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPGQGLNAVAFSGFACAHRV 488

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 493
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase Back     alignment and domain information
>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 292
TIGR02730493 carot_isom carotene isomerase. Members of this fam 100.0
KOG4254561 consensus Phytoene desaturase [Coenzyme transport 100.0
TIGR02734502 crtI_fam phytoene desaturase. Phytoene is converte 99.98
TIGR02733492 desat_CrtD C-3',4' desaturase CrtD. Members of thi 99.97
COG1233487 Phytoene dehydrogenase and related proteins [Secon 99.88
PLN02612567 phytoene desaturase 98.74
PRK07233434 hypothetical protein; Provisional 98.48
PF01593450 Amino_oxidase: Flavin containing amine oxidoreduct 97.94
PRK11883451 protoporphyrinogen oxidase; Reviewed 97.78
PLN02487569 zeta-carotene desaturase 97.59
TIGR02731453 phytoene_desat phytoene desaturase. Plants and cya 97.48
TIGR02732474 zeta_caro_desat carotene 7,8-desaturase. Carotene 97.4
TIGR03467419 HpnE squalene-associated FAD-dependent desaturase. 97.31
TIGR00562462 proto_IX_ox protoporphyrinogen oxidase. This prote 95.85
PLN02576496 protoporphyrinogen oxidase 95.25
COG1232444 HemY Protoporphyrinogen oxidase [Coenzyme metaboli 94.97
COG3349485 Uncharacterized conserved protein [Function unknow 94.67
PLN02676487 polyamine oxidase 94.34
PRK07208479 hypothetical protein; Provisional 93.34
PRK12416463 protoporphyrinogen oxidase; Provisional 92.79
PLN02268435 probable polyamine oxidase 90.83
COG3380331 Predicted NAD/FAD-dependent oxidoreductase [Genera 88.84
PRK11259376 solA N-methyltryptophan oxidase; Provisional 87.7
TIGR02734 502 crtI_fam phytoene desaturase. Phytoene is converte 87.02
PLN02568539 polyamine oxidase 86.39
TIGR02352337 thiamin_ThiO glycine oxidase ThiO. This family con 82.18
PLN03000 881 amine oxidase 80.89
PLN02976 1713 amine oxidase 80.51
PRK12842574 putative succinate dehydrogenase; Reviewed 80.42
COG2509486 Uncharacterized FAD-dependent dehydrogenases [Gene 80.21
TIGR03329460 Phn_aa_oxid putative aminophosphonate oxidoreducta 80.15
>TIGR02730 carot_isom carotene isomerase Back     alignment and domain information 
Probab=100.00  E-value=5.7e-34  Score=280.33  Aligned_cols=157  Identities=42%  Similarity=0.805  Sum_probs=136.4

Q ss_pred             cceEEEcccCCCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 022805          117 IHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVER  196 (292)
Q Consensus       117 ~h~~~~~d~~~~~~~~~~~~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~  196 (292)
                      .||+++.+|+. ...+++++||++||..||++||+|+++++++++  .+.+.|.++.  .++|++.|+++++++|+.+|+
T Consensus       332 ~~~~~~~~~~~-~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~--~~~~~w~~~~--~~~y~~~k~~~~~~il~~l~~  406 (493)
T TIGR02730       332 CHHILLEDWTN-LEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTP--SSMEDWQGLS--PKDYEAKKEADAERIIDRLEK  406 (493)
T ss_pred             ccEEecchhhc-cCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecC--CChhhccCCC--cHHHHHHHHHHHHHHHHHHHH
Confidence            35666566644 345678999999999999999999999998885  5668898753  478999999999999999999


Q ss_pred             HhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCc-CC--CCCCCCCCcEEEeCCCcCCCCcchhhhhhHHHH
Q 022805          197 ALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKE-TF--PGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIV  273 (292)
Q Consensus       197 ~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~-~~--~~~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~  273 (292)
                      ++ |+| +++|+..++.||+|+++|+++++|+||..+...+. .+  +.++|+|+|||+||+++|||+||+||++||++|
T Consensus       407 ~~-p~l-~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sG~~~  484 (493)
T TIGR02730       407 IF-PGL-DSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPGQGLNAVAFSGFAC  484 (493)
T ss_pred             HC-CCh-hhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCCCCHHHHHHHHHHH
Confidence            99 999 99999999999999999999999999987765443 22  457899999999999999999999999999999


Q ss_pred             HHHHhch
Q 022805          274 ANSLVSV  280 (292)
Q Consensus       274 A~~il~~  280 (292)
                      |+.|++.
T Consensus       485 a~~i~~~  491 (493)
T TIGR02730       485 AHRVAAD  491 (493)
T ss_pred             HHHHHhh
Confidence            9999863

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR02734 crtI_fam phytoene desaturase Back     alignment and domain information
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD Back     alignment and domain information
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN02612 phytoene desaturase Back     alignment and domain information
>PRK07233 hypothetical protein; Provisional Back     alignment and domain information
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) Back     alignment and domain information
>PRK11883 protoporphyrinogen oxidase; Reviewed Back     alignment and domain information
>PLN02487 zeta-carotene desaturase Back     alignment and domain information
>TIGR02731 phytoene_desat phytoene desaturase Back     alignment and domain information
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase Back     alignment and domain information
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase Back     alignment and domain information
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase Back     alignment and domain information
>PLN02576 protoporphyrinogen oxidase Back     alignment and domain information
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] Back     alignment and domain information
>COG3349 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02676 polyamine oxidase Back     alignment and domain information
>PRK07208 hypothetical protein; Provisional Back     alignment and domain information
>PRK12416 protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>PLN02268 probable polyamine oxidase Back     alignment and domain information
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] Back     alignment and domain information
>PRK11259 solA N-methyltryptophan oxidase; Provisional Back     alignment and domain information
>TIGR02734 crtI_fam phytoene desaturase Back     alignment and domain information
>PLN02568 polyamine oxidase Back     alignment and domain information
>TIGR02352 thiamin_ThiO glycine oxidase ThiO Back     alignment and domain information
>PLN03000 amine oxidase Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>PRK12842 putative succinate dehydrogenase; Reviewed Back     alignment and domain information
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] Back     alignment and domain information
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 2e-36
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 8e-24
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425 Back     alignment and structure
 Score =  133 bits (337), Expect = 2e-36
 Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 36/172 (20%)

Query: 109 FGLREDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFEL 168
                 +G   +++  + R ++       ++  +   P+LAPPGKH+   +         
Sbjct: 287 AADEPLVGHTGVLLTPYTRRING------VNEVTQADPELAPPGKHLTMCHQYV------ 334

Query: 169 WKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGT 228
                  + E  K      E+    ++                +     ++  L ++   
Sbjct: 335 -------APENVKNLESEIEMGLEDLKE---------------IFPGKRYEVLLIQSYHD 372

Query: 229 YGPAIQAGKETFPGHSTPIPQLYCCGDSTFP--GIGVPAVAASGAIVANSLV 278
             P  +A   T PG+ TP   LY  GD      GI V  VA     V   ++
Sbjct: 373 EWPVNRAASGTDPGNETPFSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVL 424
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
4dgk_A501 Phytoene dehydrogenase; the FAD/NAD(P)-binding ros 100.0
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 99.42
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 98.89
1b37_A472 Protein (polyamine oxidase); flavin-dependent amin 97.94
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 97.9
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 97.87
1s3e_A520 Amine oxidase [flavin-containing] B; human monoami 97.86
2yg5_A453 Putrescine oxidase; oxidoreductase, flavin; HET: F 97.78
2jae_A489 L-amino acid oxidase; oxidoreductase, dimerisation 97.73
2bcg_G453 Secretory pathway GDP dissociation inhibitor; RABG 97.44
1d5t_A433 Guanine nucleotide dissociation inhibitor; ultra-h 97.07
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 96.36
2iid_A498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 96.14
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 95.53
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 95.38
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 93.97
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 92.9
4dsg_A484 UDP-galactopyranose mutase; rossmann fold, flavin 92.57
3nlc_A549 Uncharacterized protein VP0956; FAD-binding protei 87.63
3k7m_X431 6-hydroxy-L-nicotine oxidase; enantiomeric substra 87.57
2e1m_C181 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 85.71
2vvm_A495 Monoamine oxidase N; FAD, peroxisome, flavoprotein 84.1
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 83.51
2z3y_A662 Lysine-specific histone demethylase 1; chromatin, 80.99
2xag_A852 Lysine-specific histone demethylase 1; amine oxida 80.76
3fpz_A326 Thiazole biosynthetic enzyme; FAD, mitochondrion, 80.29
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} Back     alignment and structure
Probab=100.00  E-value=4.4e-33  Score=270.30  Aligned_cols=177  Identities=20%  Similarity=0.294  Sum_probs=120.1

Q ss_pred             CCCceeEEEeecccCCCCCCCCCccceEEE-cccCC--------CCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEccCC
Q 022805           93 LRPFSEIVDSLELEDPFGLREDLGIHHIVV-NDWDR--------GVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGT  163 (292)
Q Consensus        93 ~~~~s~~~~~~~l~~~~~l~~~l~~h~~~~-~d~~~--------~~~~~~~~~~v~~ps~~Dps~AP~G~~~i~v~t~~~  163 (292)
                      ..+.|.++++++++.+.   +.+.+|++++ .+|..        +..++++++++++||..||++||+|++++++++++ 
T Consensus       301 ~~~~s~~~~~~~l~~~~---~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~-  376 (501)
T 4dgk_A          301 RMSNSLFVLYFGLNHHH---DQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPV-  376 (501)
T ss_dssp             --CCEEEEEEEEESSCC---TTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEE-
T ss_pred             ccCCceeEEEecccCCc---cccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEEEEEec-
Confidence            34567777777777775   6788899888 45543        23467889999999999999999999999999874 


Q ss_pred             CCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCC-CCCccCCCCcCC--
Q 022805          164 EPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGT-YGPAIQAGKETF--  240 (292)
Q Consensus       164 ~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~Gs-yG~a~~~~~~~~--  240 (292)
                       ++..|.+     .+|++.|+++++++++.+|+.+.|+| +++|+.+++.||+||++|+++++|+ ||.++...|..+  
T Consensus       377 -p~~~~~~-----~~~~~~~~~~~~~vl~~l~~~~~P~~-~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~R  449 (501)
T 4dgk_A          377 -PHLGTAN-----LDWTVEGPKLRDRIFAYLEQHYMPGL-RSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFR  449 (501)
T ss_dssp             -CCTTTSC-----CCHHHHHHHHHHHHHHHHHHHTCTTH-HHHEEEEEEECTTTTC------------------------
T ss_pred             -Ccccccc-----ccHHHHHHHHHHHHHHHHHHhhCCCh-HHceEEEEECCHHHHHHHcCCCCccccChhcchhhccccC
Confidence             4444443     46899999999999999998655999 9999999999999999999999999 999988777533  


Q ss_pred             CCC-CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805          241 PGH-STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV  280 (292)
Q Consensus       241 ~~~-~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~  280 (292)
                      |.+ .|||+|||+|||+|+||+||+||++||++||++|++.
T Consensus       450 P~~~~t~i~gLyl~G~~t~pG~Gv~ga~~SG~~aA~~il~d  490 (501)
T 4dgk_A          450 PHNRDKTITNLYLVGAGTHPGAGIPGVIGSAKATAGLMLED  490 (501)
T ss_dssp             ------CCTTEEECCCH------HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCEEEECCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            544 4899999999999999999999999999999999864
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Back     alignment and structure
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Back     alignment and structure
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Back     alignment and structure
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Back     alignment and structure
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Back     alignment and structure
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Back     alignment and structure
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Back     alignment and structure
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Back     alignment and structure
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Back     alignment and structure
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Back     alignment and structure
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Back     alignment and structure
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Back     alignment and structure
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Back     alignment and structure
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Back     alignment and structure
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
d2dw4a2449 Lysine-specific histone demethylase 1, LSD1 {Human 97.48
d1seza1373 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 94.28
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 93.69
d3grsa1221 Glutathione reductase {Human (Homo sapiens) [TaxId 84.16
d2ivda1347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 83.12
d1ojta1229 Dihydrolipoamide dehydrogenase {Neisseria meningit 83.06
d1ebda1223 Dihydrolipoamide dehydrogenase {Bacillus stearothe 82.49
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=2.5e-05  Score=66.11  Aligned_cols=40  Identities=30%  Similarity=0.517  Sum_probs=31.4

Q ss_pred             CCCCCCCCcEEEeCCCcCCCC--cchhhhhhHHHHHHHHhch
Q 022805          241 PGHSTPIPQLYCCGDSTFPGI--GVPAVAASGAIVANSLVSV  280 (292)
Q Consensus       241 ~~~~T~i~nLyl~G~~~~pG~--Gv~gv~~SG~~~A~~il~~  280 (292)
                      +..+++++||||||++|++++  +|.||+.||+.||++|++.
T Consensus       405 ~~~~~~~~~l~fAGe~t~~~~~g~~~GA~~SG~~aA~~Il~~  446 (449)
T d2dw4a2         405 PGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQ  446 (449)
T ss_dssp             -----CCCCEEECSGGGCTTSCSSHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCCEEEEcCCcCCCCceehHHHHHHHHHHHHHHHHH
Confidence            566899999999999998763  5999999999999999853
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure