Citrus Sinensis ID: 022812


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
MGTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLYSRNFPQEGPNW
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHccccccccccccccccHHHHHHHHcccccccccccccccc
cccEccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEHcccHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHcHHHHHHHHHcccccccccccccccc
MGTVIDSHFLALTAIVTVGYQLLFFVITALFkfdkvtdfagsTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPvtvvnasdrdpsvqaVDVIGWIMWSVGVSIEAIADQQklsfknspenrgkwcnvgfwkysrhpnyfgeIFLWWGIFVastpvldgaeWLVILGPIFLTLLLLFISGiplleesadkkfgnmpayrlykkttspliplppvvygnlpWWLKTILFelplysrnfpqegpnw
MGTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQklsfknspenrgKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLysrnfpqegpnw
MGTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGlrlalfllmrilNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWlvilgpifltllllfisgipllEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLYSRNFPQEGPNW
***VIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFK****NRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLYSR*********
*GTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLYS**********
MGTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLYSRNFPQEGPNW
*GTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLYSRN********
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLYSRNFPQEGPNW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
297734310307 unnamed protein product [Vitis vinifera] 1.0 0.947 0.852 1e-144
359491022291 PREDICTED: uncharacterized protein LOC10 0.996 0.996 0.852 1e-143
449439449300 PREDICTED: uncharacterized protein LOC10 1.0 0.97 0.811 1e-134
224133212292 predicted protein [Populus trichocarpa] 1.0 0.996 0.842 1e-133
255583469310 conserved hypothetical protein [Ricinus 1.0 0.938 0.808 1e-131
357118017293 PREDICTED: uncharacterized protein LOC10 0.989 0.982 0.789 1e-131
259490034291 uncharacterized protein LOC100304216 [Ze 0.965 0.965 0.801 1e-130
363807524290 uncharacterized protein LOC100780288 [Gl 0.986 0.989 0.781 1e-130
413933316293 putative domain of unknown function (DUF 0.965 0.959 0.801 1e-130
115454871291 Os03g0708400 [Oryza sativa Japonica Grou 0.989 0.989 0.803 1e-129
>gi|297734310|emb|CBI15557.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/292 (85%), Positives = 268/292 (91%), Gaps = 1/292 (0%)

Query: 1   MGTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWH 60
           MGTVIDSHFLALTAIVTVGYQ LFF+ITAL KFDKVTDFAGSTNF+I+A+LTL+LKG+WH
Sbjct: 1   MGTVIDSHFLALTAIVTVGYQFLFFIITALLKFDKVTDFAGSTNFVILAVLTLVLKGTWH 60

Query: 61  FRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSL 120
           FRQVVLT L V+WGLRL +FLLMRIL WGEDRRFDEMRSNLGKLA+FW FQAVWVWTVSL
Sbjct: 61  FRQVVLTLLVVIWGLRLGIFLLMRILQWGEDRRFDEMRSNLGKLAVFWTFQAVWVWTVSL 120

Query: 121 PVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKY 180
           PVT+VNAS RDPS+QA D+IGWIMWSVG++IEA ADQQKLSFKNSPENRGKWCNVG WKY
Sbjct: 121 PVTIVNASGRDPSLQAADIIGWIMWSVGITIEASADQQKLSFKNSPENRGKWCNVGVWKY 180

Query: 181 SRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFG 240
           +RHPNYFGEI LWWGIFVASTPVL+GAEWLVILGPIFLTLLLLF+SGIPLLEESADKKFG
Sbjct: 181 TRHPNYFGEILLWWGIFVASTPVLEGAEWLVILGPIFLTLLLLFVSGIPLLEESADKKFG 240

Query: 241 NMPAYRLYKKTTSPLIPLPPVVYGNLPWWLK-TILFELPLYSRNFPQEGPNW 291
           N+  YRLYK TTSPL+PLPPVVYGNLP W K T L E P YSRN PQEG NW
Sbjct: 241 NVAGYRLYKSTTSPLVPLPPVVYGNLPSWFKTTFLLEFPFYSRNLPQEGQNW 292




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491022|ref|XP_003634205.1| PREDICTED: uncharacterized protein LOC100853969 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449439449|ref|XP_004137498.1| PREDICTED: uncharacterized protein LOC101219154 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224133212|ref|XP_002321511.1| predicted protein [Populus trichocarpa] gi|222868507|gb|EEF05638.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255583469|ref|XP_002532493.1| conserved hypothetical protein [Ricinus communis] gi|223527792|gb|EEF29892.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357118017|ref|XP_003560756.1| PREDICTED: uncharacterized protein LOC100830682 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|259490034|ref|NP_001159138.1| uncharacterized protein LOC100304216 [Zea mays] gi|223942193|gb|ACN25180.1| unknown [Zea mays] gi|413933315|gb|AFW67866.1| putative domain of unknown function (DUF1295) containing family protein [Zea mays] Back     alignment and taxonomy information
>gi|363807524|ref|NP_001241888.1| uncharacterized protein LOC100780288 [Glycine max] gi|255636515|gb|ACU18596.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|413933316|gb|AFW67867.1| putative domain of unknown function (DUF1295) containing family protein [Zea mays] Back     alignment and taxonomy information
>gi|115454871|ref|NP_001051036.1| Os03g0708400 [Oryza sativa Japonica Group] gi|13937298|gb|AAK50129.1|AC087797_14 unknown protein [Oryza sativa Japonica Group] gi|108710687|gb|ABF98482.1| expressed protein [Oryza sativa Japonica Group] gi|113549507|dbj|BAF12950.1| Os03g0708400 [Oryza sativa Japonica Group] gi|125545445|gb|EAY91584.1| hypothetical protein OsI_13219 [Oryza sativa Indica Group] gi|125587653|gb|EAZ28317.1| hypothetical protein OsJ_12291 [Oryza sativa Japonica Group] gi|215694680|dbj|BAG89871.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
TAIR|locus:2027774302 AT1G73650 [Arabidopsis thalian 0.989 0.953 0.671 1.8e-103
TAIR|locus:2194090305 AT1G18180 [Arabidopsis thalian 1.0 0.954 0.650 3.3e-102
FB|FBgn0035914316 CG6282 [Drosophila melanogaste 0.951 0.876 0.415 2e-56
UNIPROTKB|G4N6G0335 MGG_03731 "Uncharacterized pro 0.697 0.605 0.440 4.4e-45
ZFIN|ZDB-GENE-030131-3630288 si:ch211-210c8.6 "si:ch211-210 0.865 0.875 0.369 8.1e-44
UNIPROTKB|Q74AM9256 GSU2323 "Uncharacterized prote 0.831 0.945 0.310 1.5e-28
TIGR_CMR|GSU_2323256 GSU_2323 "membrane protein, pu 0.831 0.945 0.310 1.5e-28
DICTYBASE|DDB_G0279829267 DDB_G0279829 "DUF1295 family p 0.807 0.880 0.298 5.2e-26
UNIPROTKB|G4NC19328 MGG_00459 "Uncharacterized pro 0.498 0.442 0.337 1.4e-22
UNIPROTKB|Q722V9257 LMOf2365_0620 "Putative membra 0.656 0.743 0.295 9e-22
TAIR|locus:2027774 AT1G73650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
 Identities = 194/289 (67%), Positives = 215/289 (74%)

Query:     1 MGTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWH 60
             MGTV+DSHFLALTAIVTV YQ +FFVITALFKFD+VTDFAGSTNF+I+A+LTL+LK SWH
Sbjct:     1 MGTVLDSHFLALTAIVTVIYQFIFFVITALFKFDQVTDFAGSTNFVILAVLTLVLKASWH 60

Query:    61 FRQVVLTFLAVVWGXXXXXXXXXXXXNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSL 120
             FRQ+VLT L VVWG             WGEDRRFDE R N+ +L IFW  QAVWVWTVSL
Sbjct:    61 FRQIVLTLLVVVWGLRLGIFLLMRILQWGEDRRFDEQRGNIVRLIIFWTLQAVWVWTVSL 120

Query:   121 PVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKY 180
             P+T+VNASD   S++  DVIGW MW  G  IEA ADQQKLSFKNSPENRGKWC+VG WKY
Sbjct:   121 PLTLVNASDGGGSLKPADVIGWTMWVFGFLIEAAADQQKLSFKNSPENRGKWCDVGVWKY 180

Query:   181 SRHPNYFGEIFLWWGIFVASTPVLDGAEWXXXXXXXXXXXXXXXXXXXXXXEESADKKFG 240
             SRHPNYFGE+ LWWGIFVA++PVL+GAE+                      E SADKK G
Sbjct:   181 SRHPNYFGEMLLWWGIFVAASPVLEGAEYLVIFGPLFLTLLLLFVSGIPLLEASADKKHG 240

Query:   241 NMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTI-LFELPLYSRNFPQEG 288
             N  AYR YKKTTSPLI  P  VYGNLP W KT+ LFE P YSRN PQEG
Sbjct:   241 NSGAYRSYKKTTSPLILFPRGVYGNLPGWFKTVFLFEFPFYSRNLPQEG 289




GO:0005737 "cytoplasm" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016021 "integral to membrane" evidence=IEA
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009813 "flavonoid biosynthetic process" evidence=RCA
GO:0010224 "response to UV-B" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2194090 AT1G18180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0035914 CG6282 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|G4N6G0 MGG_03731 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3630 si:ch211-210c8.6 "si:ch211-210c8.6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q74AM9 GSU2323 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2323 GSU_2323 "membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279829 DDB_G0279829 "DUF1295 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4NC19 MGG_00459 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q722V9 LMOf2365_0620 "Putative membrane protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00017810001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (292 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00032227001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (355 aa)
      0.827
GSVIVG00020325001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (351 aa)
      0.720
GSVIVG00020324001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (316 aa)
      0.675
GSVIVG00028313001
SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (311 aa)
      0.561
GSVIVG00000320001
SubName- Full=Chromosome chr9 scaffold_104, whole genome shotgun sequence; (382 aa)
       0.559
TIL
SubName- Full=Temperature-induced lipocalin (Putative uncharacterized protein) (Chromosome unde [...] (185 aa)
       0.472
GSVIVG00020327001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (869 aa)
       0.440

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
pfam06966235 pfam06966, DUF1295, Protein of unknown function (D 5e-98
COG3752272 COG3752, COG3752, Steroid 5-alpha reductase family 1e-41
>gnl|CDD|219244 pfam06966, DUF1295, Protein of unknown function (DUF1295) Back     alignment and domain information
 Score =  287 bits (736), Expect = 5e-98
 Identities = 111/235 (47%), Positives = 153/235 (65%), Gaps = 6/235 (2%)

Query: 24  FFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLM 83
           F++I+       + D A    F+I+A+LT +L      R++++T L  +WGLRL   LL 
Sbjct: 1   FWLISRRTGNYGLVDVAWGGGFVILAVLTALLSEGATLRRMLVTLLVTLWGLRLGWHLLR 60

Query: 84  RILNWGEDRRFDEMRSNLGK------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAV 137
           R   WGED R+ ++R N GK      L IF+I QAV ++ VSLPV + NAS  +P++ A 
Sbjct: 61  RTWGWGEDYRYVDLRKNWGKWPYLLSLLIFFILQAVLLYIVSLPVYLANASGPNPALGAW 120

Query: 138 DVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIF 197
           D+IG  +W VG+  EA+ADQQ  +FK  P N+GK C+ G W+YSRHPNYFGE  +WWGIF
Sbjct: 121 DIIGIAIWLVGIGFEALADQQLWAFKGDPANKGKVCDTGLWRYSRHPNYFGEALIWWGIF 180

Query: 198 VASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTT 252
           + +  VL G EW  I GP+ +TLLL+F+SGIPLLE S  KK+G+   YR Y++ T
Sbjct: 181 LIAINVLSGLEWWTIAGPLLMTLLLVFVSGIPLLEASMLKKYGDREDYRAYQRRT 235


This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long. Length = 235

>gnl|CDD|226275 COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 291
COG3752272 Steroid 5-alpha reductase family enzyme [General f 100.0
PF06966235 DUF1295: Protein of unknown function (DUF1295); In 100.0
KOG4650311 consensus Predicted steroid reductase [General fun 100.0
PF01222432 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 fam 99.83
COG2020187 STE14 Putative protein-S-isoprenylcysteine methylt 99.75
KOG1435428 consensus Sterol reductase/lamin B receptor [Lipid 99.74
PF04191106 PEMT: Phospholipid methyltransferase ; InterPro: I 99.56
KOG1638257 consensus Steroid reductase [Lipid transport and m 99.47
KOG2628201 consensus Farnesyl cysteine-carboxyl methyltransfe 99.4
PLN02392260 probable steroid reductase DET2 99.35
PF02544150 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase 99.29
PF0414094 ICMT: Isoprenylcysteine carboxyl methyltransferase 99.21
PLN02560308 enoyl-CoA reductase 99.12
PLN03164323 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal 99.01
COG1755172 Uncharacterized protein conserved in bacteria [Fun 98.7
KOG1640304 consensus Predicted steroid reductase [Lipid trans 97.84
KOG1639297 consensus Steroid reductase required for elongatio 97.67
PF07298191 NnrU: NnrU protein; InterPro: IPR009915 This famil 96.68
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only] Back     alignment and domain information
Probab=100.00  E-value=1.2e-62  Score=435.75  Aligned_cols=251  Identities=30%  Similarity=0.570  Sum_probs=222.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccCeEeecccchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhHHHHHhhcC
Q 022812            8 HFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILN   87 (291)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~a~~~~~~~~~~~~r~~l~~~lv~~W~~RL~~~l~~R~~~   87 (291)
                      ++....+++.++.+.+.|++|..+||.+++|..||.++++.|+..+..+.+...|+.+++.++++||+||+.|+++|..+
T Consensus        14 ~~~~v~al~~~v~~~~~w~vs~~tg~~~~VD~~Wg~~~~~~a~~~~l~~~~~~~r~~l~~~LvtlWs~RL~~hl~rR~~~   93 (272)
T COG3752          14 MVIVVVALALAVLFAVAWAVSRRTGNYSWVDAVWGGGFVAVAVVLALLGEGDPRRRWLLLFLVTLWSLRLGWHLYRRTRG   93 (272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCcceeehhccchHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            44566677778888999999999999999999999999999998887776666799999999999999999999999999


Q ss_pred             cCcchhhHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022812           88 WGEDRRFDEMRSNLGK-------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKL  160 (291)
Q Consensus        88 ~geD~Ry~~~r~~~~~-------~~~~~~~Q~~~~~l~~lP~~~~~~~~~~~~l~~~~~ig~~l~~~G~~ie~~AD~Ql~  160 (291)
                      +|||+||.++|+++++       ++.+|.+|+++.+++++|+++++.. .+.++.+.|++|++++++|+++|+++|.|+.
T Consensus        94 ~geD~RY~~l~~~wg~t~~~~~~l~~vf~lQ~ll~~ilalpi~~a~~~-~~~~~~~~d~~g~~iwivg~~fE~lgD~QL~  172 (272)
T COG3752          94 KGEDPRYVNLRQRWGKTIYPLKALFIVFGLQALLLFILALPIYLAALN-GPREFGWWDVIGLAIWIVGIVFEALGDAQLW  172 (272)
T ss_pred             CCCChHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999998763       5678899999999999999998765 3557899999999999999999999999999


Q ss_pred             hcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcC
Q 022812          161 SFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFG  240 (291)
Q Consensus       161 ~f~~~~~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~~~pl~~~~ll~~~sg~~~~E~~~~~kyG  240 (291)
                      .||++|+||||+|++|+||+|||||||||.++|||+++++++-.  ...+++.+|++|+.++.++||+|..||++.|.  
T Consensus       173 ~Fk~~P~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~~--~~~W~~~sPllmt~LL~~vSGvp~l~ekm~k~--  248 (272)
T COG3752         173 VFKKDPRNKGKLLDTGLWRWTRHPNYFGEALVWWGFYLIAISEW--LLLWAVASPLLMTWLLVHVSGVPPLEEKMLKS--  248 (272)
T ss_pred             HHHhChhhccccccccceecccCcchHHHHHHHHHHHHHHHhhh--hHhhhcccHHHHHHHHHHhcCCChHHHHHhcc--
Confidence            99999999999999999999999999999999999999987422  12346689999999999999999555443332  


Q ss_pred             CchHHHHHHhhCCcccccCCCCCC
Q 022812          241 NMPAYRLYKKTTSPLIPLPPVVYG  264 (291)
Q Consensus       241 ~~~~Y~~Y~~~t~~fiP~~~~~~~  264 (291)
                       +|+|++||+||++|+|++|++..
T Consensus       249 -r~~fr~Yq~rt~~F~P~~~k~~~  271 (272)
T COG3752         249 -RPGFREYQRRTNAFFPRPPKKAL  271 (272)
T ss_pred             -cHhHHHHHHHhcccCCCCCcccC
Confidence             39999999999999999998753



>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long Back     alignment and domain information
>KOG4650 consensus Predicted steroid reductase [General function prediction only] Back     alignment and domain information
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis Back     alignment and domain information
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2 Back     alignment and domain information
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism] Back     alignment and domain information
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN02392 probable steroid reductase DET2 Back     alignment and domain information
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1 Back     alignment and domain information
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2 Back     alignment and domain information
>PLN02560 enoyl-CoA reductase Back     alignment and domain information
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional Back     alignment and domain information
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism] Back     alignment and domain information
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism] Back     alignment and domain information
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
4a2n_B194 Isoprenylcysteine carboxyl methyltransferase; memb 7e-06
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans} Length = 194 Back     alignment and structure
 Score = 44.9 bits (106), Expect = 7e-06
 Identities = 27/198 (13%), Positives = 59/198 (29%), Gaps = 16/198 (8%)

Query: 63  QVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPV 122
           ++    + ++W     ++    + N  + +       +L  L    +             
Sbjct: 7   KICFIVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTA----VF 62

Query: 123 TVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQ---KLSFKNSPENRGKWCNVGFWK 179
           +    S       ++ +   I+  + + +     +      S     ++  K    G +K
Sbjct: 63  SSYLDSFNINLPDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYK 122

Query: 180 YSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKF 239
             RHP Y           +           ++I G +   +L      +P  EE   ++F
Sbjct: 123 NIRHPMYAHLWLWVITQGIIL-----SNWVVLIFGIVAWAILYFIR--VPKEEELLIEEF 175

Query: 240 GNMPAYRLYKKTTSPLIP 257
           G    Y  Y   T  L P
Sbjct: 176 G--DEYIEYMGKTGRLFP 191


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
4a2n_B194 Isoprenylcysteine carboxyl methyltransferase; memb 99.93
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans} Back     alignment and structure
Probab=99.93  E-value=2.6e-24  Score=188.09  Aligned_cols=115  Identities=19%  Similarity=0.309  Sum_probs=92.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--CCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHH
Q 022812          135 QAVDVIGWIMWSVGVSIEAIADQQKLS-FKN--SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLV  211 (291)
Q Consensus       135 ~~~~~ig~~l~~~G~~ie~~AD~Ql~~-f~~--~~~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~  211 (291)
                      .+...+|.+++++|+.++..||.|+.+ |+.  +++++++++++|+|++||||||+|+++.|+|+++...+      +++
T Consensus        75 ~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s------~~~  148 (194)
T 4a2n_B           75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSN------WVV  148 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTC------HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhcc------HHH
Confidence            567899999999999999999999855 443  34577889999999999999999999999999887532      333


Q ss_pred             HH-HHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 022812          212 IL-GPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP  259 (291)
Q Consensus       212 ~~-~pl~~~~ll~~~sg~~~~E~~~~~kyG~~~~Y~~Y~~~t~~fiP~~  259 (291)
                      ++ ++++++++  +..+++.||+.+.++||  ++|++|+++|+++||++
T Consensus       149 ~~~~~~~~~~~--~~~ri~~EE~~L~~~fG--~~Y~~Y~~rv~r~iP~i  193 (194)
T 4a2n_B          149 LIFGIVAWAIL--YFIRVPKEEELLIEEFG--DEYIEYMGKTGRLFPKV  193 (194)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHHHHHHHHT--HHHHHHHHHCBSSSCC-
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHhC--HHHHHHHHhCCeeCcee
Confidence            33 33333332  23568999999999999  99999999999999975




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00