Citrus Sinensis ID: 022813

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHcccccccHHHHHHHHHHHHHHHccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHccccHHcccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHccccccccccEEEEEEccccccccHHHcHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MWIWRALILLQLVNgvlgwgkegHFAICKIAEGYLTEDALAAVKELlpdsaegdlanvcswadEVRFhmrwssplhyvdtpdfmcnykycrdchdsvgrknrcvtGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFigdvhqplhvgfigdkggntiTVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNitdgwsndvsswencannqtvcpngyasesVSLACKFAyrnatpgttleddyfltRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQL
Flexible Loop (DISEMBL)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRktnlhhvwdTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSsqikiaql
Low Complexity Region (SEG)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQL
Disordered region (IsUnstruct)
*WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQI*****
Disordered Region (DISOPRED)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQ**ISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSS*I*****
Disordered Region (DISEMBL)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQL
Disordered Region (DISPRO)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQ******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
F4JJL0	299	Endonuclease 4 OS=Arabido	yes	no	0.989	0.963	0.713	1e-127
F4JJL3	296	Endonuclease 5 OS=Arabido	no	no	1.0	0.983	0.625	1e-111
Q8LDW6	294	Endonuclease 3 OS=Arabido	no	no	0.979	0.969	0.630	1e-107
Q9C9G4	290	Endonuclease 2 OS=Arabido	no	no	0.934	0.937	0.580	2e-92
Q9SXA6	305	Endonuclease 1 OS=Arabido	no	no	0.945	0.901	0.521	2e-84
P24021	287	Nuclease S1 OS=Aspergillu	yes	no	0.879	0.891	0.316	2e-25
P24504	270	Nuclease PA3 OS=Penicilli	N/A	no	0.879	0.948	0.310	3e-22
P24289	270	Nuclease P1 OS=Penicilliu	N/A	no	0.879	0.948	0.310	7e-22

>sp|F4JJL0|ENDO4_ARATH Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1

 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 207/290 (71%), Positives = 247/290 (85%), Gaps = 2/290 (0%)

Query: 2   WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSW 61
           W  R L+L QL+NG L WGKEGH+ +CKIAE Y  E+ +AAVK+LLP SA+GDLA+VCSW
Sbjct: 8   WFARVLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSW 67

Query: 62  ADEVRFHM--RWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
            DE++ H   RW+SPLHYVDTPD+ CNY+YCRDCHD+   ++RCVTGAI+NYTMQL S  
Sbjct: 68  PDEIKHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSAS 127

Query: 120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
           ++S ++  YNLTEALMFLSHFIGD+HQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWD M
Sbjct: 128 ENSDTIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNM 187

Query: 180 IIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACK 239
           II+SALKTYY+  + +MI+++Q N+T+ WSNDV  WE+C  NQT CPN YASES++LACK
Sbjct: 188 IIESALKTYYNKSLPLMIEALQANLTNDWSNDVPLWESCQLNQTACPNPYASESINLACK 247

Query: 240 FAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIA 289
           +AYRNATPGTTL DDYFL+RLPIVEKRLAQ GIRLAATLNRIFSS+ K A
Sbjct: 248 YAYRNATPGTTLGDDYFLSRLPIVEKRLAQGGIRLAATLNRIFSSKPKHA 297

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: 0EC: .EC: 1

>sp|F4JJL3|ENDO5_ARATH Endonuclease 5 OS=Arabidopsis thaliana GN=ENDO5 PE=2 SV=1

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 184/294 (62%), Positives = 236/294 (80%), Gaps = 3/294 (1%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGD-LANVC 59
           +WI   L+L  LV+G L WGK+GH+ +CK+AEG+  +D +AAVK+LLP+S +G  LA+ C
Sbjct: 3   LWIVSVLVLTHLVHGALCWGKDGHYTVCKLAEGFFEDDTIAAVKKLLPESVDGGGLADFC 62

Query: 60  SWADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKS 117
           SW DE++     +W+S LHYV+TP++ CNY+YCRDCHD+   K+ CVTGAI+NYT QL S
Sbjct: 63  SWPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHKHKDWCVTGAIFNYTNQLMS 122

Query: 118 GYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWD 177
             ++S ++  YNLTEAL+FLSH++GDVHQPLH GF+GD GGNTI V WY  K+NLHHVWD
Sbjct: 123 ASENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGGNTIIVNWYHNKSNLHHVWD 182

Query: 178 TMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLA 237
            MIIDSAL+TYY+S +  MIQ++Q  + +GWSNDV SW++C  +Q  CPN YASES+ LA
Sbjct: 183 NMIIDSALETYYNSSLPHMIQALQAKLKNGWSNDVPSWKSCHFHQKACPNLYASESIDLA 242

Query: 238 CKFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQL 291
           CK+AYRNATPGTTL D+YFL+RLP+VEKRLAQ GIRLAATLNRIFS++ K+A L
Sbjct: 243 CKYAYRNATPGTTLGDEYFLSRLPVVEKRLAQGGIRLAATLNRIFSAKPKLAGL 296

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases. Endonuclease that recognizes and cleaves some mismatches with high efficiency, including heteroduplex double-stranded DNA; mostly efficient on T/G, A/G and G/G mismatches, less efficient for T/T and poorly efficient for C/C, A/A, T/C and A/C.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|Q8LDW6|ENDO3_ARATH Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1

 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/292 (63%), Positives = 225/292 (77%), Gaps = 7/292 (2%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           MWI   L+L QLVNG L WG  GH+A+CKIA+ Y  ED + AVK+LLP+SA G+LA VCS
Sbjct: 7   MWIVSILVLTQLVNGALCWGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCS 66

Query: 61  WADEVRF--HMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
           W DE++     RW+S LH+ DTPD+ CNY+Y RDC      K+ CVTGAI+NYT QL S 
Sbjct: 67  WPDEIKKLPQWRWTSALHFADTPDYKCNYEYSRDC-----PKDWCVTGAIFNYTNQLMST 121

Query: 119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
            ++S S+  YNLTEALMFLSH++GD+HQPLH GFIGD GGN I V WY ++TNLH VWD 
Sbjct: 122 SENSQSIVHYNLTEALMFLSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDD 181

Query: 179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLAC 238
           MII+SAL+TYY+S +  MI  +Q  + +GWSNDV SWE+C  NQT CPN YASES+ LAC
Sbjct: 182 MIIESALETYYNSSLPRMIHELQAKLKNGWSNDVPSWESCQLNQTACPNPYASESIDLAC 241

Query: 239 KFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQ 290
           K+AYRNAT GTTL D YF++RLP+VEKRLAQ GIRLA TLNRIFS++ K+A+
Sbjct: 242 KYAYRNATAGTTLGDYYFVSRLPVVEKRLAQGGIRLAGTLNRIFSAKRKLAR 293

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|Q9C9G4|ENDO2_ARATH Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=2 SV=1

 Score =  339 bits (869), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 159/274 (58%), Positives = 199/274 (72%), Gaps = 2/274 (0%)

Query: 9   LLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFH 68
           LL     + GWGKEGH  ICKIA+  L E A  AVKELLP+SAEGDL+++C WAD V+F 
Sbjct: 18  LLYAAPNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFR 77

Query: 69  MRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKY 128
             WSSPLHY++TPD  C+Y+Y RDC D  G K RCV GAIYNYT QL S    + S  +Y
Sbjct: 78  YHWSSPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQY 136

Query: 129 NLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTY 188
           NLTEAL+F+SHF+GD+HQPLHV +  DKGGNTI V WY RK NLHH+WD+ II++A    
Sbjct: 137 NLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADL 196

Query: 189 YDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPG 248
           Y+S +  M+ ++++NIT  W++ V  WE C   +T CP+ YASE +  AC +AY+  T G
Sbjct: 197 YNSALEGMVDALKKNITTEWADQVKRWETC-TKKTACPDIYASEGIQAACDWAYKGVTEG 255

Query: 249 TTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIF 282
            TLED+YF +RLPIV +RLAQ G+RLAATLNRIF
Sbjct: 256 DTLEDEYFYSRLPIVYQRLAQGGVRLAATLNRIF 289

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|Q9SXA6|ENDO1_ARATH Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1

 Score =  312 bits (799), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/280 (52%), Positives = 196/280 (70%), Gaps = 5/280 (1%)

Query: 13  VNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMR 70
           V+ V  W KEGH   C+IA+  L       V+ LLPD  +GDL+ +C W D++R  +  R
Sbjct: 23  VSSVRSWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIRHWYKYR 82

Query: 71  WSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNL 130
           W+S LHY+DTPD  C+Y+Y RDCHD  G K+ CV GAI N+T QL+  Y +  S  +YN+
Sbjct: 83  WTSHLHYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQH-YGEGTSDRRYNM 141

Query: 131 TEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYD 190
           TEAL+FLSHF+GD+HQP+HVGF  D+GGNTI +RWY+ K+NLHHVWD  II +ALK  YD
Sbjct: 142 TEALLFLSHFMGDIHQPMHVGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTALKENYD 201

Query: 191 SDIAVMIQSIQRNITDG-WSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGT 249
            ++ ++ + +++NIT+G W +D+SSW  C N+   CP+ YASES+ LACK+ Y+    G 
Sbjct: 202 KNLDLLQEDLEKNITNGLWHDDLSSWTEC-NDLIACPHKYASESIKLACKWGYKGVKSGE 260

Query: 250 TLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIA 289
           TL ++YF TRLPIV KR+ Q G+RLA  LNR+FS    IA
Sbjct: 261 TLSEEYFNTRLPIVMKRIVQGGVRLAMILNRVFSDDHAIA 300

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases during senescence. Endonuclease that recognizes and cleaves all types of mismatches with high efficiency, including heteroduplex double-stranded DNA. Maybe involved in programmed cell death (PCD) and senescence.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=nucS PE=1 SV=2

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 137/291 (47%), Gaps = 35/291 (12%)

Query: 10  LQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF-- 67
           L L     GWG  GH  +  IA+ ++     +  + +L D +   LANV +WAD  ++  
Sbjct: 12  LALAQLTYGWGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTD 71

Query: 68  HMRWSSPLHYVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSIS 124
              +S P H++D    P   C   Y RDC  S G    C   AI NYT         +I 
Sbjct: 72  AGEFSKPYHFIDAQDNPPQSCGVDYDRDC-GSAG----CSISAIQNYT---------NIL 117

Query: 125 VEKYNLTE---ALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMII 181
           +E  N +E   AL F+ H IGD+HQPLH   + + GGN I V +    TNLHH+WDT + 
Sbjct: 118 LESPNGSEALNALKFVVHIIGDIHQPLHDENL-EAGGNGIDVTYDGETTNLHHIWDTNMP 176

Query: 182 DSALKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWENCANNQTVCPNG--YASESVSLAC 238
           + A   Y  S        +   I  G +S+   SW +  + +        +A+++ +  C
Sbjct: 177 EEAAGGYSLSVAKTYADLLTERIKTGTYSSKKDSWTDGIDIKDPVSTSMIWAADANTYVC 236

Query: 239 K------FAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFS 283
                   AY N+   T L  +Y+    P+ E+ +A++G RLAA L+ I S
Sbjct: 237 STVLDDGLAYINS---TDLSGEYYDKSQPVFEELIAKAGYRLAAWLDLIAS 284

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|P24504|NUP3_PENSQ Nuclease PA3 OS=Penicillium sp. PE=1 SV=1

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 134/280 (47%), Gaps = 24/280 (8%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 77  YVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D    P   CN  Y RDC  S      C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGSS-----GCSISAIANYTQRVSDS-----SLSSENHAEA 110

Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 194 AVMIQSIQRNITDG-WSNDVSSW---ENCANNQTVCPNGYASESVSLACKFAYRNATPGT 249
               +++ +NI  G ++   + W   +N +   T     +AS++ +L C     +     
Sbjct: 170 ESWAKTLVQNIESGNYTAQATGWIKGDNISEPITTATR-WASDANALVCTVVMPHGAAAL 228

Query: 250 TLED---DYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQI 286
              D    Y+ + +  +E ++A+ G RLA  +N I  S+I
Sbjct: 229 QTGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHGSEI 268

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Penicillium sp (taxid: 5081)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 6

>sp|P24289|NUP1_PENCI Nuclease P1 OS=Penicillium citrinum PE=1 SV=1

 Score =  104 bits (260), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 133/280 (47%), Gaps = 24/280 (8%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 77  YVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D    P   CN  Y RDC  S      C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGSS-----GCSISAIANYTQRVSDS-----SLSSENHAEA 110

Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 194 AVMIQSIQRNITDG-WSNDVSSW---ENCANNQTVCPNGYASESVSLACKFAYRNATPGT 249
               +++ +NI  G ++     W   +N +   T     +AS++ +L C     +     
Sbjct: 170 ESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATR-WASDANALVCTVVMPHGAAAL 228

Query: 250 TLED---DYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQI 286
              D    Y+ + +  +E ++A+ G RLA  +N I  S+I
Sbjct: 229 QTGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHGSEI 268

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Penicillium citrinum (taxid: 5077)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
224116204	297	predicted protein [Populus trichocarpa]	0.996	0.976	0.779	1e-136
255560824	298	Nuclease PA3, putative [Ricinus communis	0.996	0.973	0.775	1e-134
225469300	323	PREDICTED: nuclease S1 [Vitis vinifera]	0.993	0.894	0.780	1e-134
296080968	332	unnamed protein product [Vitis vinifera]	0.993	0.870	0.780	1e-134
357475823	383	Nuclease S1 [Medicago truncatula] gi|355	0.948	0.720	0.755	1e-128
379046752	309	PARS II endonuclease [Petroselinum crisp	0.979	0.922	0.747	1e-127
297803994	299	hypothetical protein ARALYDRAFT_492719 [	0.993	0.966	0.714	1e-126
22328857	299	endonuclease 4 [Arabidopsis thaliana] gi	0.989	0.963	0.713	1e-125
403220385	310	endonuclease [Apium graveolens]	0.979	0.919	0.726	1e-124
388512843	304	unknown [Lotus japonicus]	0.938	0.898	0.749	1e-123

>gi|224116204|ref|XP_002317238.1| predicted protein [Populus trichocarpa] gi|222860303|gb|EEE97850.1| predicted protein [Populus trichocarpa]

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 226/290 (77%), Positives = 254/290 (87%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           +W  RAL+LLQ V G+LGWGKEGH+A CKIAEGYLT +ALAAVKELLP+SAEGDLANVCS
Sbjct: 7   LWAVRALVLLQFVTGILGWGKEGHYATCKIAEGYLTAEALAAVKELLPESAEGDLANVCS 66

Query: 61  WADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQ 120
           W DE+RFH  WSS LHYVDTPDF CNY+Y RDCHDS GRK+RCVTGAIYNYT QL S YQ
Sbjct: 67  WPDEIRFHYHWSSALHYVDTPDFRCNYEYFRDCHDSSGRKDRCVTGAIYNYTNQLLSLYQ 126

Query: 121 DSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMI 180
           +S S   YNLTEALMFLSHFIGDVHQPLHVGF+GD GGNTI V WYRRK+NLHHVWD MI
Sbjct: 127 NSNSESNYNLTEALMFLSHFIGDVHQPLHVGFLGDLGGNTIQVHWYRRKSNLHHVWDNMI 186

Query: 181 IDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKF 240
           I+SALKT+Y SD+A MI++IQ NIT+ WSN    WE+CA+N TVCPN YASES+SLACKF
Sbjct: 187 IESALKTFYSSDLATMIRAIQNNITENWSNQQPLWEHCAHNHTVCPNPYASESISLACKF 246

Query: 241 AYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQ 290
           AY+NA+PG+TLEDDYFL+RLP+VEKRLAQ GIRLAATLNRIF+S +KIAQ
Sbjct: 247 AYKNASPGSTLEDDYFLSRLPVVEKRLAQGGIRLAATLNRIFASYVKIAQ 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560824|ref|XP_002521425.1| Nuclease PA3, putative [Ricinus communis] gi|223539324|gb|EEF40915.1| Nuclease PA3, putative [Ricinus communis]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/290 (77%), Positives = 249/290 (85%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           +W+ R L+LLQ V+G+LGWGKEGH+A CKIAEGYLTEDALAAVK LLPDSAEGD A VC 
Sbjct: 8   LWVGRVLVLLQFVSGILGWGKEGHYATCKIAEGYLTEDALAAVKYLLPDSAEGDFAAVCP 67

Query: 61  WADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQ 120
           WAD+VRFH  WSS LH+VDTPDF CNY+YCRDCHDS G K+RCVT AI+NYT QL S YQ
Sbjct: 68  WADQVRFHYHWSSALHFVDTPDFKCNYEYCRDCHDSAGHKDRCVTAAIFNYTNQLTSAYQ 127

Query: 121 DSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMI 180
           +  S   YNLTEALMFLSHFIGDVHQPLHVGF GD GGN I V WYRRKTNLHHVWD MI
Sbjct: 128 NFNSGFNYNLTEALMFLSHFIGDVHQPLHVGFTGDLGGNRIIVHWYRRKTNLHHVWDDMI 187

Query: 181 IDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKF 240
           IDSALK +Y SD+A+MIQ+IQ N+T+GWSN +  WE C NN+TVCPN YASES+SLACKF
Sbjct: 188 IDSALKKFYGSDLAIMIQAIQNNMTEGWSNQLPLWEYCQNNRTVCPNLYASESISLACKF 247

Query: 241 AYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQ 290
           AY+NATPG+TLEDDYFL+RLPIVEKRLAQ GIRLAATLNRIFS Q KIAQ
Sbjct: 248 AYKNATPGSTLEDDYFLSRLPIVEKRLAQGGIRLAATLNRIFSPQSKIAQ 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469300|ref|XP_002269258.1| PREDICTED: nuclease S1 [Vitis vinifera]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/291 (78%), Positives = 256/291 (87%), Gaps = 2/291 (0%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           + I RAL+LLQL+ G+L WGKEGH+A+CKIAEG+L+EDAL AVK LLPD AEGDLA VCS
Sbjct: 7   LLIVRALVLLQLIPGILSWGKEGHYAVCKIAEGFLSEDALGAVKALLPDYAEGDLAAVCS 66

Query: 61  WADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
           WADE+R  FH RWS PLHYVDTPD+ CNY+YCRDCHD  G K+ CVTGAIYNYT QL SG
Sbjct: 67  WADEIRHNFHWRWSGPLHYVDTPDYRCNYEYCRDCHDFRGHKDICVTGAIYNYTKQLTSG 126

Query: 119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
           Y +S S  +YNLTEALMFLSHFIGDVHQPLHVGF GD+GGNTI VRWYRRKTNLHH+WD 
Sbjct: 127 YHNSGSEIRYNLTEALMFLSHFIGDVHQPLHVGFTGDEGGNTIIVRWYRRKTNLHHIWDN 186

Query: 179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLAC 238
           MIIDSALKTYY+SD+A+MIQ+IQRNIT  WS D+SSW+NCA++ T CPN YASES+SLAC
Sbjct: 187 MIIDSALKTYYNSDLAIMIQAIQRNITGDWSFDISSWKNCASDDTACPNLYASESISLAC 246

Query: 239 KFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIA 289
           KFAYRNATPG+TL DDYFL+RLPIVEKRLAQ GIRLAATLNRIF+SQ KI+
Sbjct: 247 KFAYRNATPGSTLGDDYFLSRLPIVEKRLAQGGIRLAATLNRIFASQPKIS 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296080968|emb|CBI18600.3| unnamed protein product [Vitis vinifera]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/291 (78%), Positives = 256/291 (87%), Gaps = 2/291 (0%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           + I RAL+LLQL+ G+L WGKEGH+A+CKIAEG+L+EDAL AVK LLPD AEGDLA VCS
Sbjct: 7   LLIVRALVLLQLIPGILSWGKEGHYAVCKIAEGFLSEDALGAVKALLPDYAEGDLAAVCS 66

Query: 61  WADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
           WADE+R  FH RWS PLHYVDTPD+ CNY+YCRDCHD  G K+ CVTGAIYNYT QL SG
Sbjct: 67  WADEIRHNFHWRWSGPLHYVDTPDYRCNYEYCRDCHDFRGHKDICVTGAIYNYTKQLTSG 126

Query: 119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
           Y +S S  +YNLTEALMFLSHFIGDVHQPLHVGF GD+GGNTI VRWYRRKTNLHH+WD 
Sbjct: 127 YHNSGSEIRYNLTEALMFLSHFIGDVHQPLHVGFTGDEGGNTIIVRWYRRKTNLHHIWDN 186

Query: 179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLAC 238
           MIIDSALKTYY+SD+A+MIQ+IQRNIT  WS D+SSW+NCA++ T CPN YASES+SLAC
Sbjct: 187 MIIDSALKTYYNSDLAIMIQAIQRNITGDWSFDISSWKNCASDDTACPNLYASESISLAC 246

Query: 239 KFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIA 289
           KFAYRNATPG+TL DDYFL+RLPIVEKRLAQ GIRLAATLNRIF+SQ KI+
Sbjct: 247 KFAYRNATPGSTLGDDYFLSRLPIVEKRLAQGGIRLAATLNRIFASQPKIS 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475823|ref|XP_003608197.1| Nuclease S1 [Medicago truncatula] gi|355509252|gb|AES90394.1| Nuclease S1 [Medicago truncatula]

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 210/278 (75%), Positives = 243/278 (87%), Gaps = 2/278 (0%)

Query: 15  GVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWS 72
            VL WGK+GH+AICKI++ YL+EDAL AVK+LLPDSA+ DLA+VCSW DE+R  +H RWS
Sbjct: 105 NVLAWGKDGHYAICKISQEYLSEDALFAVKQLLPDSAQADLASVCSWPDEIRHNYHYRWS 164

Query: 73  SPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTE 132
           SPLHY+DTPDF CNY+YCRDCHDS G K+RCVTGAIYNYTMQLK    D+ S  KYNLTE
Sbjct: 165 SPLHYIDTPDFKCNYQYCRDCHDSYGHKHRCVTGAIYNYTMQLKLANADASSELKYNLTE 224

Query: 133 ALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSD 192
           ALMFLSHF+GDVHQPLHVGF GD GGN+ITVRWYRRKTNLHHVWD MII+SALK +Y SD
Sbjct: 225 ALMFLSHFVGDVHQPLHVGFTGDLGGNSITVRWYRRKTNLHHVWDNMIIESALKKFYGSD 284

Query: 193 IAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLE 252
           ++ MIQ+IQRNI+D WSNDVS WE+CA+N T CP+ YASES+SLACKFAY+NATPG+TLE
Sbjct: 285 LSTMIQAIQRNISDIWSNDVSIWEHCAHNHTACPDRYASESISLACKFAYKNATPGSTLE 344

Query: 253 DDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQ 290
           DDYFL+RLPIVEKRLAQ G+RLAA LN IF+ + +IAQ
Sbjct: 345 DDYFLSRLPIVEKRLAQGGVRLAAILNHIFTPKTRIAQ 382

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|379046752|gb|AFC88012.1| PARS II endonuclease [Petroselinum crispum]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/285 (74%), Positives = 243/285 (85%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           M  + A+  L L+  V  WGKEGHFAICKIA+G+LT+DAL AVK LLP+ A+GDLA VCS
Sbjct: 3   MLTYTAIYFLLLLPSVFSWGKEGHFAICKIAQGFLTKDALTAVKALLPEYADGDLAAVCS 62

Query: 61  WADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQ 120
           WADEVRFHMRWSSPLHYVDTPDF CNYKYCRDCHDSVGRK+RCVTGAIYNYT QL  G  
Sbjct: 63  WADEVRFHMRWSSPLHYVDTPDFRCNYKYCRDCHDSVGRKDRCVTGAIYNYTEQLLLGVH 122

Query: 121 DSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMI 180
           D  S    NLTEALMFLSHF+GDVHQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWDTM+
Sbjct: 123 DLDSKMNNNLTEALMFLSHFVGDVHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDTMM 182

Query: 181 IDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKF 240
           I+S+LKT+Y+SD++ +IQSIQ NIT  W  D  SW NC  +Q  CP+ YASES+ LACKF
Sbjct: 183 IESSLKTFYNSDLSSLIQSIQSNITGIWLTDSLSWRNCTADQVACPDPYASESIELACKF 242

Query: 241 AYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQ 285
           AYRNATPGTTL D+YFL+RLP+VEKRLAQ+G+RLAATLNRIF+S+
Sbjct: 243 AYRNATPGTTLGDEYFLSRLPVVEKRLAQAGVRLAATLNRIFTSK 287

Source: Petroselinum crispum

Species: Petroselinum crispum

Genus: Petroselinum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803994|ref|XP_002869881.1| hypothetical protein ARALYDRAFT_492719 [Arabidopsis lyrata subsp. lyrata] gi|297315717|gb|EFH46140.1| hypothetical protein ARALYDRAFT_492719 [Arabidopsis lyrata subsp. lyrata]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 208/291 (71%), Positives = 248/291 (85%), Gaps = 2/291 (0%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           +W    L+L QL+NG L WGKEGH+ +CKIAE Y  E+ +AAVK+LLP+SA+GDLA+VCS
Sbjct: 7   LWFATVLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPESADGDLASVCS 66

Query: 61  WADEVRFHM--RWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
           W DE++ H   RW+SPLHYVDTPD+ CNY+YCRDCHD+   ++RCVTGAI+NYTMQL S 
Sbjct: 67  WPDEIKHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKHQDRCVTGAIFNYTMQLMSA 126

Query: 119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
            ++S ++  YNLTEALMFLSHFIGD+HQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWD 
Sbjct: 127 SENSHTIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDN 186

Query: 179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLAC 238
           MII+SALKTYY+  + + IQ++Q N+T GWSNDV SWE+C  NQT CPN YASES++LAC
Sbjct: 187 MIIESALKTYYNKSLPLFIQALQTNLTHGWSNDVPSWESCQLNQTACPNPYASESINLAC 246

Query: 239 KFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIA 289
           K+AYRNATPGTTL DDYFL+RLPIVEKRLAQ GIRLAATLNRIFSS+ K A
Sbjct: 247 KYAYRNATPGTTLGDDYFLSRLPIVEKRLAQGGIRLAATLNRIFSSKPKHA 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328857|ref|NP_680734.1| endonuclease 4 [Arabidopsis thaliana] gi|391359266|sp|F4JJL0.1|ENDO4_ARATH RecName: Full=Endonuclease 4; Short=AtENDO4; AltName: Full=Deoxyribonuclease ENDO4; AltName: Full=Single-stranded-nucleate endonuclease ENDO4; Flags: Precursor gi|332659076|gb|AEE84476.1| endonuclease 4 [Arabidopsis thaliana]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 207/290 (71%), Positives = 247/290 (85%), Gaps = 2/290 (0%)

Query: 2   WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSW 61
           W  R L+L QL+NG L WGKEGH+ +CKIAE Y  E+ +AAVK+LLP SA+GDLA+VCSW
Sbjct: 8   WFARVLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSW 67

Query: 62  ADEVRFHM--RWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
            DE++ H   RW+SPLHYVDTPD+ CNY+YCRDCHD+   ++RCVTGAI+NYTMQL S  
Sbjct: 68  PDEIKHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSAS 127

Query: 120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
           ++S ++  YNLTEALMFLSHFIGD+HQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWD M
Sbjct: 128 ENSDTIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNM 187

Query: 180 IIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACK 239
           II+SALKTYY+  + +MI+++Q N+T+ WSNDV  WE+C  NQT CPN YASES++LACK
Sbjct: 188 IIESALKTYYNKSLPLMIEALQANLTNDWSNDVPLWESCQLNQTACPNPYASESINLACK 247

Query: 240 FAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIA 289
           +AYRNATPGTTL DDYFL+RLPIVEKRLAQ GIRLAATLNRIFSS+ K A
Sbjct: 248 YAYRNATPGTTLGDDYFLSRLPIVEKRLAQGGIRLAATLNRIFSSKPKHA 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|403220385|dbj|BAM38525.1| endonuclease [Apium graveolens]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 207/285 (72%), Positives = 240/285 (84%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           M  +  +  L L+  V  WGK+GHFAICKIA+G+L++DAL AVK LLP+ A+GDLA VCS
Sbjct: 3   MLTYTGIYFLLLLPSVFCWGKQGHFAICKIAQGFLSKDALTAVKALLPEYADGDLAAVCS 62

Query: 61  WADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQ 120
           WADEVRFHMRWSSPLHYVDTPDF CNYKYCRDCHDSVGRK+RCVTGAI+NYT QL  G  
Sbjct: 63  WADEVRFHMRWSSPLHYVDTPDFRCNYKYCRDCHDSVGRKDRCVTGAIHNYTEQLLLGVH 122

Query: 121 DSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMI 180
           D  S    NLTEALMFLSHF+GDVHQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWDTM+
Sbjct: 123 DLNSKMNNNLTEALMFLSHFVGDVHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDTMM 182

Query: 181 IDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKF 240
           I+S+LKT+Y+SD++ +IQ+IQ NIT  W  D  SW NC  +  VCP+ YASES+ LACKF
Sbjct: 183 IESSLKTFYNSDLSSLIQAIQSNITGVWLTDSLSWSNCTADHVVCPDPYASESIELACKF 242

Query: 241 AYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQ 285
           AYRNATPGTTL D+YFL+RLP+ EKRLAQ+G+RLAATLNRIF+S 
Sbjct: 243 AYRNATPGTTLGDEYFLSRLPVAEKRLAQAGVRLAATLNRIFTSN 287

Source: Apium graveolens

Species: Apium graveolens

Genus: Apium

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512843|gb|AFK44483.1| unknown [Lotus japonicus]

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 206/275 (74%), Positives = 239/275 (86%), Gaps = 2/275 (0%)

Query: 18  GWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWSSPL 75
           GWG+ GH+AICKI + YL+EDAL AVK+LLPDSAEGDLA +CSW DEVR  +  RWSS L
Sbjct: 29  GWGEHGHYAICKITQEYLSEDALFAVKQLLPDSAEGDLAAICSWPDEVRRNYRYRWSSAL 88

Query: 76  HYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALM 135
           HYVDTPDF CNY YCRDCHDS G +++CVTGAIYNYTMQLKS   D+    +YNLTEALM
Sbjct: 89  HYVDTPDFKCNYDYCRDCHDSYGHQHKCVTGAIYNYTMQLKSDNADTSPELRYNLTEALM 148

Query: 136 FLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAV 195
           FLSHF+GDVHQPLHVGF GD GGN+ITVRWYRRKTNLHHVWD MII+SALKT+Y SD+++
Sbjct: 149 FLSHFVGDVHQPLHVGFTGDLGGNSITVRWYRRKTNLHHVWDDMIIESALKTFYGSDLSI 208

Query: 196 MIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDY 255
           MIQ+IQRNITD W NDVS WE+CA+N T CP+ YASES+ LACK+AY+NATPG+TLED+Y
Sbjct: 209 MIQAIQRNITDIWLNDVSIWEHCAHNYTACPDRYASESIKLACKYAYKNATPGSTLEDEY 268

Query: 256 FLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQ 290
           FL+RLPIVEKRLAQ G+RLAA LNRIF+S+ +IAQ
Sbjct: 269 FLSRLPIVEKRLAQGGVRLAAILNRIFNSKTRIAQ 303

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:504955531	299	ENDO4 "endonuclease 4" [Arabid	0.989	0.963	0.713	7.7e-119
TAIR|locus:2119612	296	ENDO5 "endonuclease 5" [Arabid	1.0	0.983	0.625	3.6e-105
TAIR|locus:2119687	294	ENDO3 "endonuclease 3" [Arabid	0.979	0.969	0.630	7.9e-101
TAIR|locus:2199297	290	ENDO2 "AT1G68290" [Arabidopsis	0.934	0.937	0.580	2.9e-87
TAIR|locus:2202114	305	BFN1 "bifunctional nuclease i"	0.965	0.921	0.513	2e-81
UNIPROTKB|G5EHU9	306	MGCH7_ch7g611 "Nuclease PA3" [	0.900	0.856	0.280	1.5e-26

TAIR|locus:504955531 ENDO4 "endonuclease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
 Identities = 207/290 (71%), Positives = 247/290 (85%)

Query:     2 WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSW 61
             W  R L+L QL+NG L WGKEGH+ +CKIAE Y  E+ +AAVK+LLP SA+GDLA+VCSW
Sbjct:     8 WFARVLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSW 67

Query:    62 ADEVRFHM--RWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
              DE++ H   RW+SPLHYVDTPD+ CNY+YCRDCHD+   ++RCVTGAI+NYTMQL S  
Sbjct:    68 PDEIKHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSAS 127

Query:   120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
             ++S ++  YNLTEALMFLSHFIGD+HQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWD M
Sbjct:   128 ENSDTIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNM 187

Query:   180 IIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACK 239
             II+SALKTYY+  + +MI+++Q N+T+ WSNDV  WE+C  NQT CPN YASES++LACK
Sbjct:   188 IIESALKTYYNKSLPLMIEALQANLTNDWSNDVPLWESCQLNQTACPNPYASESINLACK 247

Query:   240 FAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIA 289
             +AYRNATPGTTL DDYFL+RLPIVEKRLAQ GIRLAATLNRIFSS+ K A
Sbjct:   248 YAYRNATPGTTLGDDYFLSRLPIVEKRLAQGGIRLAATLNRIFSSKPKHA 297

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

TAIR|locus:2119612 ENDO5 "endonuclease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
 Identities = 184/294 (62%), Positives = 236/294 (80%)

Query:     1 MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGD-LANVC 59
             +WI   L+L  LV+G L WGK+GH+ +CK+AEG+  +D +AAVK+LLP+S +G  LA+ C
Sbjct:     3 LWIVSVLVLTHLVHGALCWGKDGHYTVCKLAEGFFEDDTIAAVKKLLPESVDGGGLADFC 62

Query:    60 SWADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKS 117
             SW DE++     +W+S LHYV+TP++ CNY+YCRDCHD+   K+ CVTGAI+NYT QL S
Sbjct:    63 SWPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHKHKDWCVTGAIFNYTNQLMS 122

Query:   118 GYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWD 177
               ++S ++  YNLTEAL+FLSH++GDVHQPLH GF+GD GGNTI V WY  K+NLHHVWD
Sbjct:   123 ASENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGGNTIIVNWYHNKSNLHHVWD 182

Query:   178 TMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLA 237
              MIIDSAL+TYY+S +  MIQ++Q  + +GWSNDV SW++C  +Q  CPN YASES+ LA
Sbjct:   183 NMIIDSALETYYNSSLPHMIQALQAKLKNGWSNDVPSWKSCHFHQKACPNLYASESIDLA 242

Query:   238 CKFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQL 291
             CK+AYRNATPGTTL D+YFL+RLP+VEKRLAQ GIRLAATLNRIFS++ K+A L
Sbjct:   243 CKYAYRNATPGTTLGDEYFLSRLPVVEKRLAQGGIRLAATLNRIFSAKPKLAGL 296

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2119687 ENDO3 "endonuclease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 184/292 (63%), Positives = 225/292 (77%)

Query:     1 MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
             MWI   L+L QLVNG L WG  GH+A+CKIA+ Y  ED + AVK+LLP+SA G+LA VCS
Sbjct:     7 MWIVSILVLTQLVNGALCWGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCS 66

Query:    61 WADEVRF--HMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
             W DE++     RW+S LH+ DTPD+ CNY+Y RDC      K+ CVTGAI+NYT QL S 
Sbjct:    67 WPDEIKKLPQWRWTSALHFADTPDYKCNYEYSRDCP-----KDWCVTGAIFNYTNQLMST 121

Query:   119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
              ++S S+  YNLTEALMFLSH++GD+HQPLH GFIGD GGN I V WY ++TNLH VWD 
Sbjct:   122 SENSQSIVHYNLTEALMFLSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDD 181

Query:   179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLAC 238
             MII+SAL+TYY+S +  MI  +Q  + +GWSNDV SWE+C  NQT CPN YASES+ LAC
Sbjct:   182 MIIESALETYYNSSLPRMIHELQAKLKNGWSNDVPSWESCQLNQTACPNPYASESIDLAC 241

Query:   239 KFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQ 290
             K+AYRNAT GTTL D YF++RLP+VEKRLAQ GIRLA TLNRIFS++ K+A+
Sbjct:   242 KYAYRNATAGTTLGDYYFVSRLPVVEKRLAQGGIRLAGTLNRIFSAKRKLAR 293

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2199297 ENDO2 "AT1G68290" [Arabidopsis thaliana (taxid:3702)]

 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 159/274 (58%), Positives = 199/274 (72%)

Query:     9 LLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFH 68
             LL     + GWGKEGH  ICKIA+  L E A  AVKELLP+SAEGDL+++C WAD V+F 
Sbjct:    18 LLYAAPNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFR 77

Query:    69 MRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKY 128
               WSSPLHY++TPD  C+Y+Y RDC D  G K RCV GAIYNYT QL S    + S  +Y
Sbjct:    78 YHWSSPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQY 136

Query:   129 NLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTY 188
             NLTEAL+F+SHF+GD+HQPLHV +  DKGGNTI V WY RK NLHH+WD+ II++A    
Sbjct:   137 NLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADL 196

Query:   189 YDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPG 248
             Y+S +  M+ ++++NIT  W++ V  WE C   +T CP+ YASE +  AC +AY+  T G
Sbjct:   197 YNSALEGMVDALKKNITTEWADQVKRWETCTK-KTACPDIYASEGIQAACDWAYKGVTEG 255

Query:   249 TTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIF 282
              TLED+YF +RLPIV +RLAQ G+RLAATLNRIF
Sbjct:   256 DTLEDEYFYSRLPIVYQRLAQGGVRLAATLNRIF 289

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0004519 "endonuclease activity" evidence=ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=ISS

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

TAIR|locus:2202114 BFN1 "bifunctional nuclease i" [Arabidopsis thaliana (taxid:3702)]

 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 147/286 (51%), Positives = 200/286 (69%)

Query:     7 LILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR 66
             +++L  V+ V  W KEGH   C+IA+  L       V+ LLPD  +GDL+ +C W D++R
Sbjct:    17 ILILCSVSSVRSWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIR 76

Query:    67 --FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSIS 124
               +  RW+S LHY+DTPD  C+Y+Y RDCHD  G K+ CV GAI N+T QL+  Y +  S
Sbjct:    77 HWYKYRWTSHLHYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQH-YGEGTS 135

Query:   125 VEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSA 184
               +YN+TEAL+FLSHF+GD+HQP+HVGF  D+GGNTI +RWY+ K+NLHHVWD  II +A
Sbjct:   136 DRRYNMTEALLFLSHFMGDIHQPMHVGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTA 195

Query:   185 LKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWENCANNQTVCPNGYASESVSLACKFAYR 243
             LK  YD ++ ++ + +++NIT+G W +D+SSW  C N+   CP+ YASES+ LACK+ Y+
Sbjct:   196 LKENYDKNLDLLQEDLEKNITNGLWHDDLSSWTEC-NDLIACPHKYASESIKLACKWGYK 254

Query:   244 NATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIA 289
                 G TL ++YF TRLPIV KR+ Q G+RLA  LNR+FS    IA
Sbjct:   255 GVKSGETLSEEYFNTRLPIVMKRIVQGGVRLAMILNRVFSDDHAIA 300

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0010150 "leaf senescence" evidence=IEP

GO:0016891 "endoribonuclease activity, producing 5'-phosphomonoesters" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0080187 "floral organ senescence" evidence=IEP

UNIPROTKB|G5EHU9 MGCH7_ch7g611 "Nuclease PA3" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 83/296 (28%), Positives = 139/296 (46%)

Query:     6 ALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEV 65
             A ++L  + G L WG  GH  +  +A  ++       ++ LL +  +  LA V +WAD +
Sbjct:     9 APLILSGLPGALAWGSLGHITVAYLASRFVAPQTETYLQRLLRNDTDAYLAGVATWADSI 68

Query:    66 RFHMRW---SSPLHYVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
             R+  +W   +   H++D    P   C+    RDC D  G    CV  A+ NYT ++    
Sbjct:    69 RY-TKWGHFTGVFHFIDAKDDPPRSCSVDMDRDCKDQ-G----CVVTALQNYTSRM---- 118

Query:   120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
              D   + ++   +A  F+ HF+GD+HQPLH   +  +GGN I V W+ R+ NLH VWD+ 
Sbjct:   119 MDLDRLREWERAQAAKFVVHFVGDMHQPLHDEDVA-RGGNGIHVLWHGREYNLHSVWDSA 177

Query:   180 IIDSAL------KTYYDSDIAVMIQSIQRNITDG-WSNDVSSWENCANNQTVCPNG---- 228
             I +         +  YD+   V    ++R +  G +  +  +W +  +     P G    
Sbjct:   178 IAEQLRGGVRRGRGMYDA-AKVWADELEREVKAGRFRAESEAWLDGVD--LADPVGTALI 234

Query:   229 YASESVSLACKFAYRN---ATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRI 281
             +A +  +  C         A  G  L   Y+    P++E ++A++G RLA  L+ I
Sbjct:   235 WARQGNAFVCSHVLPEGPEAIKGQELSGKYYEEAAPVIESQVARAGFRLARWLDLI 290


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.433    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      291       291   0.00089  115 3  11 22  0.48    33
                                                     33  0.43    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  625 (66 KB)
  Total size of DFA:  254 KB (2134 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.47u 0.25s 24.72t   Elapsed:  00:00:01
  Total cpu time:  24.47u 0.25s 24.72t   Elapsed:  00:00:01
  Start:  Fri May 10 20:35:32 2013   End:  Fri May 10 20:35:33 2013

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4JJL0	ENDO4_ARATH	3, ., 1, ., 3, 0, ., 1	0.7137	0.9896	0.9632	yes	no
P24021	NUS1_ASPOR	3, ., 1, ., 3, 0, ., 1	0.3161	0.8797	0.8919	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.30.1	0.824
3rd Layer	3.1.30	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XI0310 hypothetical protein (297 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
pfam02265	251	pfam02265, S1-P1_nuclease, S1/P1 Nuclease	1e-116
cd11010	249	cd11010, S1-P1_nuclease, S1/P1 nucleases and relat	7e-85
cd10981	238	cd10981, ZnPC_S1P1, Zinc dependent phospholipase C	1e-07

>gnl|CDD|216953 pfam02265, S1-P1_nuclease, S1/P1 Nuclease

 Score =  333 bits (855), Expect = e-116
 Identities = 127/268 (47%), Positives = 160/268 (59%), Gaps = 20/268 (7%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLH 76
           WGKEGH  + +IAE +L+  A  AV+ LLP   +GDLA V +WAD++R     RW+SP H
Sbjct: 1   WGKEGHRTVAEIAERHLSPKARKAVQRLLPGL-DGDLAQVATWADDIRSDGKYRWTSPWH 59

Query: 77  YVDTPDFMCNYKYCRDCHDSV-GRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALM 135
           Y+DTPD        RDCHD+    K  CV  AI NYT QLK     S         EAL 
Sbjct: 60  YIDTPD----NPPPRDCHDAEDCPKEGCVVSAINNYTSQLKDTTASS-----DQRAEALK 110

Query: 136 FLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAV 195
           FL HF+GD+HQPLH G  GD+GGN I VRW+ RKTNLH VWD+ II++AL  YY S ++ 
Sbjct: 111 FLVHFVGDIHQPLHAGRAGDRGGNDIKVRWFGRKTNLHSVWDSGIIETALGDYYRSSLSE 170

Query: 196 MIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDY 255
              +++  IT G   D              P  +A ES +LACK  Y   T G TL D+Y
Sbjct: 171 WADALEATITFGEYKDAW-------EPGTTPLDWAEESNALACKVVYPGVTNGATLSDEY 223

Query: 256 FLTRLPIVEKRLAQSGIRLAATLNRIFS 283
           + + LP+VE +LA++G RLAA LNRIF 
Sbjct: 224 YDSALPVVELQLAKAGYRLAALLNRIFD 251

This family contains both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. Length = 251

>gnl|CDD|211382 cd11010, S1-P1_nuclease, S1/P1 nucleases and related enzymes

 Score =  254 bits (651), Expect = 7e-85
 Identities = 106/268 (39%), Positives = 137/268 (51%), Gaps = 23/268 (8%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLH 76
           WG EGH  + +IAE YLT  A  AV  LL   +   LA   +WAD++R     +W++P H
Sbjct: 1   WGAEGHRIVAEIAEQYLTPKARKAVDRLLGGLSGESLAEAATWADDIRSDPAYKWTAPWH 60

Query: 77  YVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMF 136
           YV+ PD  C +   RDC         CV  AI NYT +LK               EAL F
Sbjct: 61  YVNIPDNPCKFYDERDC-----PPGGCVVSAIKNYTARLKDPSLS-----DAERAEALKF 110

Query: 137 LSHFIGDVHQPLHVGFIGDKGGNTITVR-WYRRKTNLHHVWDTMIIDSALKTYYDSDIAV 195
           L HF+GD+HQPLHVG   D GGN   V  W+ RKTNLH VWD+ +ID A  +Y +   A+
Sbjct: 111 LIHFVGDIHQPLHVGSREDGGGNDGDVGGWFGRKTNLHSVWDSGLIDKAKGSYTELAAAL 170

Query: 196 MIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGT-TLEDD 254
           +   +   I  G             +    P  +A ES  LAC+  Y N    T  L   
Sbjct: 171 LAALLAEAIETG---------LEEADAEGDPADWAQESYELACEIYYPNLPGDTLELSYA 221

Query: 255 YFLTRLPIVEKRLAQSGIRLAATLNRIF 282
           Y+    P+VE++LA++G RLAA LN IF
Sbjct: 222 YYYKAKPVVEEQLAKAGYRLAAVLNEIF 249

This family summarizes both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. S1 nuclease is more active on DNA than RNA. Its reaction products are oligonucleotides or single nucleotides with 5' phosphoryl groups. Although its primary substrate is single-stranded, it may also introduce single-stranded breaks in double-stranded DNA or RNA, or DNA-RNA hybrids. It is used as a reagent in nuclease protection assays and in removing single stranded tails from DNA molecules to create blunt ended molecules and opening hairpin loops generated during synthesis of double stranded cDNA. P1 nuclease cleaves its substrate at every position yielding nucleoside 5' monophosphates, and it does not recognize or act on double-stranded DNA. It is useful at removing single stranded strands hanging off the end of double stranded DNA and at completely cleaving melted DNA for simple DNA composition analysis. Length = 249

>gnl|CDD|211380 cd10981, ZnPC_S1P1, Zinc dependent phospholipase C/S1-P1 nuclease

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 22/177 (12%)

Query: 20  GKEGHFAICKIAEGYL-TEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYV 78
           G   H  I + A   L  E A      L  +  E  L       D+ R+     +  H +
Sbjct: 1   GFGTHHKIARDAVFTLPPELAEFWSDLLKRNIDE--LLEGAVAPDKRRYDDDGEAQNHVL 58

Query: 79  DT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALM 135
           D     D   +                     I  +  +L   ++     +  ++  A  
Sbjct: 59  DVDDYGDSALDKYGEDTL-----GYWGGAPWQIQEWYQRLVDAFRRK---DWKDIAFAAG 110

Query: 136 FLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSD 192
            LSH+IGD H PLH                   +  +H  W+T I +   + Y  +D
Sbjct: 111 VLSHYIGDAHVPLHTT--------QNYNGQLTGQDGIHRAWETRIPELYAELYALTD 159

This model describes both the bacterial and archeal zinc-dependent phospholipase C, a domain found in the alpha toxin of Clostridium perfringens, as well as S1/P1 nucleases, which predominantly act on single-stranded DNA and RNA. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
PF02265	252	S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR00315	100.0
smart00770	241	Zn_dep_PLPC Zinc dependent phospholipase C (alpha	96.55

>PF02265 S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR003154 This family contains both S1 and P1 nucleases (3

Probab=100.00  E-value=7.3e-68  Score=475.61  Aligned_cols=246  Identities=41%  Similarity=0.766  Sum_probs=190.0

Q ss_pred             CChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCCChhccccccccccc---cCCCCccccccCCCC--CCCCccccCCC
Q 022813           19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF---HMRWSSPLHYVDTPD--FMCNYKYCRDC   93 (291)
Q Consensus        19 W~~~GH~~Va~IA~~~L~~~~~~~l~~lL~~~~~~~l~~~a~WaD~ir~---~~~~~~~wHy~d~p~--~~~~~~~~~dc   93 (291)
                      ||..|||+||+||+++|+|+++++|+++|+.....+|+++|+|||+||.   .++++++|||+|+|.  .++++.+.++|
T Consensus         1 Wg~~GH~~va~iA~~~L~~~~~~~v~~il~~~~~~~l~~~A~WaD~ir~~~~~~~~~~~wHyi~~~~~~~~~~~~~~~~~   80 (252)
T PF02265_consen    1 WGAEGHRVVAEIAQRHLSPEARKKVDKILGGDSSESLAEAATWADDIRSDPAQYKWTAPWHYINQPDNKYPRDFQPARDC   80 (252)
T ss_dssp             --HHHHHHHHHHHHHHS-HHHHHHHHHHHT--STTTTGGGTTHHHHHHT-STTTGGGGGGG------BTTB----HHHHS
T ss_pred             CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCccccccHHHHHHhHHHhhccccccCcCCCccccCCccccccccccccccC
Confidence            9999999999999999999999999999987555699999999999995   579999999999998  45566555677


Q ss_pred             CCcCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhhHHHHHHHHHHHHhhcCCCCc-cCCCCCCCCCeEEEecCCCcCCc
Q 022813           94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLH-VGFIGDKGGNTITVRWYRRKTNL  172 (291)
Q Consensus        94 ~~~~~~~~~~v~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~~LiHlvGDiHQPLH-~~~~~D~GGN~~~v~~~g~~~nL  172 (291)
                           ++++|++++|.+++++|++.+.     +..+++++||||+||||||||||| ++++||+|||+++|+++|+++||
T Consensus        81 -----~~~~~~~~ai~~~~~~L~~~~~-----~~~~~~~aL~~LvH~vGDiHQPLH~~~~~~D~GGN~~~v~~~g~~~nL  150 (252)
T PF02265_consen   81 -----PNGGCVVSAIKNYTSRLKDTST-----SKAERAFALKFLVHLVGDIHQPLHTVGRKGDRGGNDIKVKFNGKKTNL  150 (252)
T ss_dssp             ------TT--HHHHHHHHHHHHT-TTS------HHHHHHHHHHHHHHHHHTTSGGGG--H--HHHTTT-EEEETTEEEEH
T ss_pred             -----CCCCcHHHHHHHHHHHHhccCC-----CcHHHHHHHHHHHHHhhhccCccccccccccCCCCeeEEEecCCcCcH
Confidence                 4689999999999999999987     468899999999999999999999 67899999999999999999999


Q ss_pred             hHHHhhhhHhhHhhhcCCchHHHHHHHHHHhhccCccchhhhhhhccCCCCCChhhhHHHHHHHHHHHcccCCCCCCCCC
Q 022813          173 HHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLE  252 (291)
Q Consensus       173 H~~WDs~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~Wa~ES~~~a~~~vY~~~~~~~~ls  252 (291)
                      |++||++|+++.....+..++.++++.+.+.+.   .+....|.+.      ||.+|+.||++++|+++|+..+++.+|+
T Consensus       151 H~~WD~~l~~~~~~~~~~~~~~~~a~~L~~~~~---~~~~~~~~~~------~~~~Wa~ES~~la~~~~y~~~~~~~~l~  221 (252)
T PF02265_consen  151 HSVWDSGLINYMIKNKYQSSWQEYADELDRKIT---KESFKSWQPG------DPEDWANESHELACNIVYPGIKNGTELS  221 (252)
T ss_dssp             HHHHHTHHHHHHHS--SHHHHHHHHHHHHHHHH---H----HHHHH------HHHHHHHHHHHHHHHTTSTT-SGGGS-T
T ss_pred             HHHHHHHHHHhhccccchhhHHHHHHHHHhhcc---chhhhhhhhh------hHHHHHHHHHHHHHHHHhccCCCCCccC
Confidence            999999999887654444556677777766653   2344555532      8999999999999999998888888899


Q ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHHHhc
Q 022813          253 DDYFLTRLPIVEKRLAQSGIRLAATLNRIFS  283 (291)
Q Consensus       253 ~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~~  283 (291)
                      ++|++++++++++||++||+|||.+||++|+
T Consensus       222 ~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~~  252 (252)
T PF02265_consen  222 DEYYTKARPVAEEQLAKAGYRLAAVLNEIFD  252 (252)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999985

1.30.1 from EC) which cleave RNA and single stranded DNA with no base specificity. ; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006308 DNA catabolic process; PDB: 1AK0_A.

>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin)

Probab=96.55  E-value=0.011  Score=52.81  Aligned_cols=113  Identities=22%  Similarity=0.204  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHhccCCHH----HHHHHHHhCCCCCCCChhccccccccccccCCCCccccccCCCCCCCCccccCCCCCcC
Q 022813           22 EGHFAICKIAEGYLTED----ALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSV   97 (291)
Q Consensus        22 ~GH~~Va~IA~~~L~~~----~~~~l~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~wHy~d~p~~~~~~~~~~dc~~~~   97 (291)
                      .-|..|..=|...|...    ....| ++|... ...+.+=..|||.-...+.- ..+||.| |....+|-+.       
T Consensus        38 ~tH~~I~~qAi~iL~nd~~~~~~~~~-~~l~~y-~~~l~~G~~~aD~~~~~~~~-~~~HFyd-p~~~~~yL~~-------  106 (241)
T smart00770       38 NTHLFIVNQALEILKNDNNKNEYKLV-EILKKN-YKELKLGSTYADYDNKYYDL-SQDHFYD-PDTGKNYLPG-------  106 (241)
T ss_pred             cHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHH-HHHHHcCCcccccCcccccc-ccccccC-CCCCCCCCCC-------
Confidence            56999999999999554    22211 233221 13577788899985533321 2569999 4433443211       


Q ss_pred             CCCCCcHHHHHHHHHHHHccCCCCchhhhhhhHHHHHHHHHHHHhhcCCCCccC
Q 022813           98 GRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVG  151 (291)
Q Consensus        98 ~~~~~~v~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~~LiHlvGDiHQPLH~~  151 (291)
                         ..........+...-...-...   ....--+.|..-.|+++|+-||+|++
T Consensus       107 ---~~~A~~~~~ky~~~A~~~~~~g---~~~~A~~~LG~a~Hy~~D~~~P~Ha~  154 (241)
T smart00770      107 ---FSNAKDTGRKYFKLALNEWKKG---NYKKAFFYLGRACHYLGDLSTPYHAN  154 (241)
T ss_pred             ---CCcHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcCCccccc
Confidence               1122223333333222111100   12334577899999999999999986

This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	291
3sng_A	277	X-ray Structure Of Fully Glycosylated Bifunctional		6e-85
4dj4_A	277	X-ray Structure Of Mutant N211d Of Bifunctional Nuc		2e-84
1ak0_A	270	P1 Nuclease In Complex With A Substrate Analog Leng		5e-23

>pdb|3SNG|A Chain A, X-ray Structure Of Fully Glycosylated Bifunctional Nuclease Tbn1 From Solanum Lycopersicum (tomato) Length = 277

Iteration: 1
 Score =  310 bits (794), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 145/269 (53%), Positives = 193/269 (71%), Gaps = 5/269 (1%)
Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWSSPLH 76
           W KEGH   C+IA+G L ++A  AVK LLP+   GDL+ +C W D+VR  +  +W+SPLH
Sbjct: 1   WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLH 60
Query: 77  YVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMF 136
           ++DTPD  CN+ Y RDCHD  G K+ CV GAI N+T QL S Y++  S  +YN+TEAL+F
Sbjct: 61  FIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQL-SHYREGTSDRRYNMTEALLF 119
Query: 137 LSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVM 196
           LSHF+GD+HQP+HVGF  D GGN+I +RW+R K+NLHHVWD  II +A K YY  DI ++
Sbjct: 120 LSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLL 179
Query: 197 IQSIQRNITDG-WSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDY 255
            + I+ N TDG WS+D++SW  C N  + C N +A+ES+++ACK+ Y+    G TL DDY
Sbjct: 180 EEDIEGNFTDGIWSDDLASWRECGNVFS-CVNKFATESINIACKWGYKGVEAGETLSDDY 238
Query: 256 FLTRLPIVEKRLAQSGIRLAATLNRIFSS 284
           F +RLPIV KR+AQ GIRLA  LN +F +
Sbjct: 239 FNSRLPIVMKRVAQGGIRLAMLLNNVFGA 267

>pdb|4DJ4|A Chain A, X-ray Structure Of Mutant N211d Of Bifunctional Nuclease Tbn1 From Solanum Lycopersicum (tomato) Length = 277

Iteration: 1
 Score =  308 bits (790), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 144/269 (53%), Positives = 193/269 (71%), Gaps = 5/269 (1%)
Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWSSPLH 76
           W KEGH   C+IA+G L ++A  AVK LLP+   GDL+ +C W D+VR  +  +W+SPLH
Sbjct: 1   WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLH 60
Query: 77  YVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMF 136
           ++DTPD  CN+ Y RDCHD  G K+ CV GAI N+T QL S Y++  S  +YN+TEAL+F
Sbjct: 61  FIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQL-SHYREGTSDRRYNMTEALLF 119
Query: 137 LSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVM 196
           LSHF+GD+HQP+HVGF  D GGN+I +RW+R K+NLHHVWD  II +A K YY  DI ++
Sbjct: 120 LSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLL 179
Query: 197 IQSIQRNITDG-WSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDY 255
            + I+ + TDG WS+D++SW  C N  + C N +A+ES+++ACK+ Y+    G TL DDY
Sbjct: 180 EEDIEGDFTDGIWSDDLASWRECGNVFS-CVNKFATESINIACKWGYKGVEAGETLSDDY 238
Query: 256 FLTRLPIVEKRLAQSGIRLAATLNRIFSS 284
           F +RLPIV KR+AQ GIRLA  LN +F +
Sbjct: 239 FNSRLPIVMKRVAQGGIRLAMLLNNVFGA 267

>pdb|1AK0|A Chain A, P1 Nuclease In Complex With A Substrate Analog Length = 270

Iteration: 1
 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 133/280 (47%), Gaps = 24/280 (8%)
Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60
Query: 77  YVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D    P   CN  Y RDC  S      C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGSS-----GCSISAIANYTQRVSDS-----SLSSENHAEA 110
Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169
Query: 194 AVMIQSIQRNITDG-WSNDVSSW---ENCANNQTVCPNGYASESVSLACKFAYRNATPGT 249
               +++ +NI  G ++     W   +N +   T     +AS++ +L C     +     
Sbjct: 170 ESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATR-WASDANALVCTVVMPHGAAAL 228
Query: 250 TLED---DYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQI 286
              D    Y+ + +  +E ++A+ G RLA  +N I  S+I
Sbjct: 229 QTGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHGSEI 268

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
3sng_A	277	Nuclease; mainly alpha helical, trinuclear metal c	2e-87
1ak0_A	270	P1 nuclease; endonuclease, reaction mechanism, thi	1e-78
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1ah7_A	245	Phospholipase C; phospholipid hydrolysis, hydrolas	2e-04

>3sng_A Nuclease; mainly alpha helical, trinuclear metal centre, 3'-nucleotidase, nucleic acids, mononucleotid cytosol membrane associated; HET: NAG BMA MAN BTB; 2.16A {Solanum lycopersicum} Length = 277

 Score =  261 bits (667), Expect = 2e-87
 Identities = 144/269 (53%), Positives = 190/269 (70%), Gaps = 5/269 (1%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLH 76
           W KEGH   C+IA+G L ++A  AVK LLP+   GDL+ +C W D+VR     +W+SPLH
Sbjct: 1   WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLH 60

Query: 77  YVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMF 136
           ++DTPD  CN+ Y RDCHD  G K+ CV GAI N+T QL   Y++  S  +YN+TEAL+F
Sbjct: 61  FIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQLSH-YREGTSDRRYNMTEALLF 119

Query: 137 LSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVM 196
           LSHF+GD+HQP+HVGF  D GGN+I +RW+R K+NLHHVWD  II +A K YY  DI ++
Sbjct: 120 LSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLL 179

Query: 197 IQSIQRNITDG-WSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDY 255
            + I+ N TDG WS+D++SW  C  N   C N +A+ES+++ACK+ Y+    G TL DDY
Sbjct: 180 EEDIEGNFTDGIWSDDLASWREC-GNVFSCVNKFATESINIACKWGYKGVEAGETLSDDY 238

Query: 256 FLTRLPIVEKRLAQSGIRLAATLNRIFSS 284
           F +RLPIV KR+AQ GIRLA  LN +F +
Sbjct: 239 FNSRLPIVMKRVAQGGIRLAMLLNNVFGA 267

>1ak0_A P1 nuclease; endonuclease, reaction mechanism, thiophosphory oligonucleotides, glycosylated protein; HET: NAG ADS THS; 1.80A {Penicillium citrinum} SCOP: a.124.1.2 Length = 270

 Score =  239 bits (609), Expect = 1e-78
 Identities = 84/278 (30%), Positives = 130/278 (46%), Gaps = 22/278 (7%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 77  YVDTPD---FMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D  D     CN  Y RDC       + C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGS-----SGCSISAIANYTQRVSDS-----SLSSENHAEA 110

Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEA-YAVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 194 AVMIQSIQRNITDG-WSNDVSSWENC--ANNQTVCPNGYASESVSLACKFAYRN---ATP 247
               +++ +NI  G ++     W      +        +AS++ +L C     +   A  
Sbjct: 170 ESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQ 229

Query: 248 GTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQ 285
              L   Y+ + +  +E ++A+ G RLA  +N I  S+
Sbjct: 230 TGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHGSE 267

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 46/331 (13%), Positives = 95/331 (28%), Gaps = 104/331 (31%)

Query: 9   LLQL-------VNGVLGWGKEGHFAICKIAEGYLTEDALAA--VKELLP----------- 48
           LL+L       ++GVLG GK            ++  D   +  V+  +            
Sbjct: 144 LLELRPAKNVLIDGVLGSGKT-----------WVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 49  DSAEGDLA---NVCSWAD---EVRFHMRWSSPLHYVDTPD----FMCNYKYCRDCH---D 95
           +S E  L     +    D     R     +  L            + +  Y   C     
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-CLLVLL 251

Query: 96  SVGRKN-------RC---VTGAIYNYTMQLKSGYQDSISVEKYNLT----EALMFLSHFI 141
           +V            C   +T      T  L +     IS++ +++T    E    L  ++
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 142 G-----------DVHQPLHVGFIGDKGGNTITVRW-YRRKTNLHHVWDTMIIDSAL---- 185
                         + P  +  I +   + +   W   +  N   +  T II+S+L    
Sbjct: 312 DCRPQDLPREVLTTN-PRRLSIIAESIRDGLA-TWDNWKHVNCDKL--TTIIESSLNVLE 367

Query: 186 ----KTYYDSDIAVMIQSIQRNITDG-----WSNDVSSWENCANNQTVCPNGYASESVSL 236
               +  +D  ++V   S   +I        W + + S                ++    
Sbjct: 368 PAEYRKMFD-RLSVFPPSA--HIPTILLSLIWFDVIKS----------DVMVVVNKLHKY 414

Query: 237 ACKFAYRNATPGT-TLEDDYFLTRLPIVEKR 266
           +     +     T ++   Y   ++ +  + 
Sbjct: 415 SL--VEKQPKESTISIPSIYLELKVKLENEY 443

>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus cereus} SCOP: a.124.1.1 PDB: 2ffz_A 1p5x_A 1p6d_A* 1p6e_A* 2fgn_A 2huc_A Length = 245

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 32/235 (13%), Positives = 64/235 (27%), Gaps = 29/235 (12%)

Query: 57  NVCSWADEVRFHMRWSSPL-HYVDTPDFMCNYKYCRD--CHDSVGRKNRCVTGAIYNYTM 113
                 D V     W + L + +   D+   Y        H       +           
Sbjct: 29  TTLVKQDRVAQLNEWRTELENGIYAADYENPYYDNSTFASHFYDPDNGKTYIPFAKQAKE 88

Query: 114 QLKSGYQDSISV-EKYNLTEALMFL---SHFIGDVHQPLHVGFIGDKGGNTITVRWYRRK 169
                ++ +    +  ++ +A  +L    H++GDV+QP+H                    
Sbjct: 89  TGAKYFKLAGESYKNKDMKQAFFYLGLSLHYLGDVNQPMHAA----------NFTNLSYP 138

Query: 170 TNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGY 229
              H  ++  +     K  Y         + +    + W +  +          V     
Sbjct: 139 QGFHSKYENFVDTI--KDNYKVTDGNGYWNWKGTNPEEWIHGAA----------VVAKQD 186

Query: 230 ASESVSLACKFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSS 284
            S  V+   K  +  A       D +     P+  KRL  +    A  +   F +
Sbjct: 187 YSGIVNDNTKDWFVKAAVSQEYADKWRAEVTPMTGKRLMDAQRVTAGYIQLWFDT 241

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
3sng_A	277	Nuclease; mainly alpha helical, trinuclear metal c	100.0
1ak0_A	270	P1 nuclease; endonuclease, reaction mechanism, thi	100.0
1ah7_A	245	Phospholipase C; phospholipid hydrolysis, hydrolas	100.0
2wxu_A	370	Phospholipase C; cytolysis, hydrolase, hemolysis,	96.44
1olp_A	370	Alpha-toxin; zinc phospholipase C, GAS gangrene de	95.81

>3sng_A Nuclease; mainly alpha helical, trinuclear metal centre, 3'-nucleotidase, nucleic acids, mononucleotid cytosol membrane associated; HET: NAG BMA MAN BTB; 2.16A {Solanum lycopersicum} PDB: 4dj4_A*

Probab=100.00  E-value=8.3e-77  Score=538.04  Aligned_cols=266  Identities=53%  Similarity=1.032  Sum_probs=238.9

Q ss_pred             CChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCCChhcccccccccc--ccCCCCccccccCCCCCCCCccccCCCCCc
Q 022813           19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDS   96 (291)
Q Consensus        19 W~~~GH~~Va~IA~~~L~~~~~~~l~~lL~~~~~~~l~~~a~WaD~ir--~~~~~~~~wHy~d~p~~~~~~~~~~dc~~~   96 (291)
                      ||..|||+||+||+++|+|+++++|+++|+.....+|+++|+|||+||  ..++|+++|||+|+|++.|++++.|||++.
T Consensus         1 Wg~~GH~~Va~IA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~p~~~c~~~~~rdc~~~   80 (277)
T 3sng_A            1 WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLHFIDTPDKACNFDYERDCHDQ   80 (277)
T ss_dssp             CCHHHHHHHHHHHHTTCCHHHHHHHHHHSCGGGTTCGGGTTTHHHHHTTSGGGGGGGGGGCCCBCTTTCCCCHHHHCBCT
T ss_pred             CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCcccccCHHHHhhhHhhhcccccccccCcceeecCCCCcCCCcccCCcccc
Confidence            999999999999999999999999999998654579999999999999  568999999999999999999999999765


Q ss_pred             CCCCCCcHHHHHHHHHHHHccCCCCchhhhhhhHHHHHHHHHHHHhhcCCCCccCCCCCCCCCeEEEecCCCcCCchHHH
Q 022813           97 VGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVW  176 (291)
Q Consensus        97 ~~~~~~~v~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~~LiHlvGDiHQPLH~~~~~D~GGN~~~v~~~g~~~nLH~~W  176 (291)
                      .+++++||++||.+++++|++.+.++. .+.+++.+|||||||||||||||||+++.+|+|||+|+|.|+|+++|||+||
T Consensus        81 ~~~~~~cvv~aI~~~t~~L~~~~~~~~-~~~~~~~~aLkfLvHfvGDiHQPLH~g~~~D~GGN~i~V~~~g~~~NLH~vW  159 (277)
T 3sng_A           81 HGVKDMCVAGAIQNFTTQLSHYREGTS-DRRYNMTEALLFLSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVW  159 (277)
T ss_dssp             TCCBTCSHHHHHHHHHHHHTTTTTCCC-CTTCCHHHHHHHHHHHHHHHHSGGGGCBTTTTTTTTCEEEETTEEEEHHHHH
T ss_pred             cCCCcchHHHHHHHHHHHHcCCCCccc-CChHHHHHHHHHHHHHhccccCCccCCCCcCCCCCeEEEEECCccCchHHHH
Confidence            567799999999999999998862000 0468899999999999999999999999999999999999999999999999


Q ss_pred             hhhhHhhHhhhcCCchHHHHHHHHHHhhcc-CccchhhhhhhccCCCCCChhhhHHHHHHHHHHHcccCCCCCCCCCHHH
Q 022813          177 DTMIIDSALKTYYDSDIAVMIQSIQRNITD-GWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDY  255 (291)
Q Consensus       177 Ds~l~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~~~~~~~~~~~~~~~~~~Wa~ES~~~a~~~vY~~~~~~~~ls~~Y  255 (291)
                      |++|++...+.++..+..++++.|.++++. .|+++.++|..|.+ ...||.+|+.||+++||++||+...++.+|+++|
T Consensus       160 Ds~ii~~~~~~~~~~~~~~~a~~L~~~i~~~~~~~~~~~w~~~~~-~~~~~~~Wa~ES~~la~~~vY~~~~~~~~L~~~Y  238 (277)
T 3sng_A          160 DREIILTAAKDYYAKDINLLEEDIEGNFTDGIWSDDLASWRECGN-VFSCVNKFATESINIACKWGYKGVEAGETLSDDY  238 (277)
T ss_dssp             HTHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTHHHHHCCCS-HHHHHHHHHHHHHHHHHHTTSTTCCTTCEECHHH
T ss_pred             HhhhhhhhhccccccCHHHHHHHHHHHhhcccchhHHHHHhhccc-ccCCHHHHHHHHHHHHHHHhccCCCCCCccCHHH
Confidence            999999877766666778899999888875 48888889987643 5579999999999999999999888888999999


Q ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 022813          256 FLTRLPIVEKRLAQSGIRLAATLNRIFSSQI  286 (291)
Q Consensus       256 ~~~~~~~~~~ql~~AG~RLA~~Ln~i~~~~~  286 (291)
                      ++++.|++|+||++||||||.+||.||+++.
T Consensus       239 ~~~~~~i~e~qla~aG~RLA~~LN~i~~~~~  269 (277)
T 3sng_A          239 FNSRLPIVMKRVAQGGIRLAMLLNNVFGASQ  269 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999999998754

>1ak0_A P1 nuclease; endonuclease, reaction mechanism, thiophosphory oligonucleotides, glycosylated protein; HET: NAG ADS THS; 1.80A {Penicillium citrinum} SCOP: a.124.1.2

Probab=100.00  E-value=1.4e-70  Score=496.68  Aligned_cols=258  Identities=32%  Similarity=0.552  Sum_probs=223.9

Q ss_pred             CChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCCChhccccccccccc--cCCCCccccccCCCC---CCCCccccCCC
Q 022813           19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLHYVDTPD---FMCNYKYCRDC   93 (291)
Q Consensus        19 W~~~GH~~Va~IA~~~L~~~~~~~l~~lL~~~~~~~l~~~a~WaD~ir~--~~~~~~~wHy~d~p~---~~~~~~~~~dc   93 (291)
                      ||.+|||+||+||+++|+|+++++|+++|+++...+|+++|+|||+||.  .++|+++|||+|+|.   ..|++++.|||
T Consensus         1 Wg~~GH~~va~iA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~~~~p~~~c~~~~~rdc   80 (270)
T 1ak0_A            1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC   80 (270)
T ss_dssp             CCHHHHHHHHHHHHHHSCHHHHHHHHHHHTCCSTTTTGGGTTHHHHHHTSTTTGGGGGGGCCCCCCBTTTBCCCCHHHHS
T ss_pred             CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCCCCcccHHHHccchhhcccCCCCCccccccCCCCcCCCCcCCCCcccCCC
Confidence            9999999999999999999999999999998755679999999999994  479999999999975   44889899999


Q ss_pred             CCcCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhhHHHHHHHHHHHHhhcCCCCccCCCCCCCCCeEEEecCCCcCCch
Q 022813           94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLH  173 (291)
Q Consensus        94 ~~~~~~~~~~v~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~~LiHlvGDiHQPLH~~~~~D~GGN~~~v~~~g~~~nLH  173 (291)
                      +     +++||++||.+++++|++.++     +.+++.++||||+|||||||||||++ .+|+|||+|+|+++|+++|||
T Consensus        81 ~-----~~~cv~~ai~~~~~~L~~~~~-----s~~~~~~aL~fLvH~vGDiHQPLH~~-~~D~GGN~i~V~~~g~~~nLH  149 (270)
T 1ak0_A           81 G-----SSGCSISAIANYTQRVSDSSL-----SSENHAEALRFLVHFIGDMTQPLHDE-AYAVGGNKINVTFDGYHDNLH  149 (270)
T ss_dssp             C-----TTCCHHHHHHHHHHHHTCTTS-----CHHHHHHHHHHHHHHHHHTTSGGGGC-CHHHHTTTCEEEETTEEEEHH
T ss_pred             C-----CcccHHHHHHHHHHHHccCCC-----CHHHHHHHHHHHHHHcccccCcccCc-CcCCCCCeEEEEECCccCccH
Confidence            4     479999999999999999776     46889999999999999999999998 689999999999999999999


Q ss_pred             HHHhhhhHhhHhhhcCCchHHHHHHHHHHhhcc-CccchhhhhhhccC--CCCCChhhhHHHHHHHHHHHcccCC---CC
Q 022813          174 HVWDTMIIDSALKTYYDSDIAVMIQSIQRNITD-GWSNDVSSWENCAN--NQTVCPNGYASESVSLACKFAYRNA---TP  247 (291)
Q Consensus       174 ~~WDs~l~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~~~~~~~~~~--~~~~~~~~Wa~ES~~~a~~~vY~~~---~~  247 (291)
                      +|||++++++..+.++..+...+++.+.+++.. .|+++.+.|.+|..  ....||.+|+.||+++||+.||+..   .+
T Consensus       150 ~vWDs~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~wa~ES~~la~~~vY~~~~~~~~  229 (270)
T 1ak0_A          150 SDWDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQ  229 (270)
T ss_dssp             HHHHTHHHHHHHSCCSHHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTTSTTCSGGGS
T ss_pred             HHHhccchhhhccccCcchHHHHHHHHHHhcccCCCchhHHHhhcCccccccccCHHHHHHHHHHHHHHHhcccCccccc
Confidence            999999998876665555666777777777654 37788888987643  2346899999999999999999853   34


Q ss_pred             CCCCCHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcchhh
Q 022813          248 GTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIK  287 (291)
Q Consensus       248 ~~~ls~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~~~~~~  287 (291)
                      +.+|+++|+.+++|++|+||++||+|||.+||.||++..+
T Consensus       230 ~~~l~~~Y~~~~~~v~e~qla~aG~RLA~~Ln~i~~~~~~  269 (270)
T 1ak0_A          230 TGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHGSEIA  269 (270)
T ss_dssp             SSBCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            6789999999999999999999999999999999987643

>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus cereus} SCOP: a.124.1.1 PDB: 2ffz_A 1p5x_A 1p6d_A* 1p6e_A* 2fgn_A 2huc_A

Probab=100.00  E-value=1.4e-43  Score=315.72  Aligned_cols=217  Identities=18%  Similarity=0.189  Sum_probs=164.0

Q ss_pred             ChhHHHHHHHHHhccCCHHHHHHHH---HhCCCCCCCChhcccccccccccc-C-CCCccccccCCCCCCCCccccCCCC
Q 022813           20 GKEGHFAICKIAEGYLTEDALAAVK---ELLPDSAEGDLANVCSWADEVRFH-M-RWSSPLHYVDTPDFMCNYKYCRDCH   94 (291)
Q Consensus        20 ~~~GH~~Va~IA~~~L~~~~~~~l~---~lL~~~~~~~l~~~a~WaD~ir~~-~-~~~~~wHy~d~p~~~~~~~~~~dc~   94 (291)
                      |..||+.|+++|...|+......++   ..+..+ ...+...|+|||+ |.. + +|+++|||+|+|.+ |++.+.++|.
T Consensus        10 ~~~tH~~I~~~A~~~L~~~~~~~~~~~~~~~~~w-~D~i~~~~~w~D~-k~~~~~~~~~~~Hy~d~~~~-~~~~~~~~~~   86 (245)
T 1ah7_A           10 GVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNEW-RTELENGIYAADY-ENPYYDNSTFASHFYDPDNG-KTYIPFAKQA   86 (245)
T ss_dssp             GGCHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHT-HHHHHHHHHHTTT-STTTTTTTTCGGGCCBTTTT-BCSSTTCCCH
T ss_pred             CCcHHHHHHHHHHHHhccccchHHHHHHHHHHhC-HHHHHhcCcCCCc-ccccccccCCCcccccCCCC-CCCCCCCCCc
Confidence            6789999999999999766421111   122222 1357777888888 732 3 89999999999864 8888888884


Q ss_pred             CcCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhhHHHHHHHHHHHHhhcCCCCccCCCCCCCCCeEEEecCCCcCCchH
Q 022813           95 DSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHH  174 (291)
Q Consensus        95 ~~~~~~~~~v~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~~LiHlvGDiHQPLH~~~~~D~GGN~~~v~~~g~~~nLH~  174 (291)
                      .      .|++.+|.++++.+++.+       ..++.++|+||+|||||||||||       |||.+.   +|+.+|||+
T Consensus        87 ~------~~~~~~~~~~~~~l~~~~-------~~~~~~aL~~l~H~vGDiHQPlH-------~gn~~~---~~~~~nlH~  143 (245)
T 1ah7_A           87 K------ETGAKYFKLAGESYKNKD-------MKQAFFYLGLSLHYLGDVNQPMH-------AANFTN---LSYPQGFHS  143 (245)
T ss_dssp             H------HHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHHTSTTT-------TTTCCT---TSSSTTHHH
T ss_pred             c------hHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHhcCCCCC-------CCcccc---CCCCCCchH
Confidence            2      399999999999998864       37799999999999999999999       677776   578899999


Q ss_pred             HHhhhhHhhHhhhcCCchHHHHHHHHHHhhccCccchhhhhhhccCCCCCChhhhHHHHHHHHHHHcccCCCCCCCCCHH
Q 022813          175 VWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDD  254 (291)
Q Consensus       175 ~WDs~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~Wa~ES~~~a~~~vY~~~~~~~~ls~~  254 (291)
                      +|| .+++.....+ ..            ..   ..+...|.      ..||.+|+.||+++ |+.+|+....+.. +++
T Consensus       144 ~WD-~~i~~~~~~y-~~------------~~---~~~~~~~~------~~~~~~W~~Es~~~-a~~~Y~~~~~~~~-~~~  198 (245)
T 1ah7_A          144 KYE-NFVDTIKDNY-KV------------TD---GNGYWNWK------GTNPEEWIHGAAVV-AKQDYSGIVNDNT-KDW  198 (245)
T ss_dssp             HHH-HHHHHHGGGG-CC------------CS---SCCCTTCS------CSCHHHHHHHHHHH-HHHTGGGTSSHHH-HHH
T ss_pred             HHH-HHHHHHhhcc-cc------------cc---hHHHHHHh------cCCHHHHHHHHHHH-HHHHhccccCCCc-ccc
Confidence            999 7776532222 11            00   11222332      24899999999999 6779987654444 556


Q ss_pred             HHh---------c----hHHHHHHHHHHHHHHHHHHHHHHhcchhh
Q 022813          255 YFL---------T----RLPIVEKRLAQSGIRLAATLNRIFSSQIK  287 (291)
Q Consensus       255 Y~~---------~----~~~~~~~ql~~AG~RLA~~Ln~i~~~~~~  287 (291)
                      |+.         +    +++++++||++||+|||.+||.+|++.++
T Consensus       199 Y~~~~~~~~~~~~~~~~~~~v~~~qL~~aG~RLA~~Ln~i~~~~~~  244 (245)
T 1ah7_A          199 FVKAAVSQEYADKWRAEVTPMTGKRLMDAQRVTAGYIQLWFDTYGD  244 (245)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            763         5    89999999999999999999999987653

>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A

Probab=96.44  E-value=0.012  Score=54.24  Aligned_cols=219  Identities=17%  Similarity=0.134  Sum_probs=104.6

Q ss_pred             hhHHHHHHHHHhccCCHH-------HHHHHHHhCCCCCCCChhccccccccccccCCCCccccccCCCCCCCCccccCCC
Q 022813           21 KEGHFAICKIAEGYLTED-------ALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDC   93 (291)
Q Consensus        21 ~~GH~~Va~IA~~~L~~~-------~~~~l~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~wHy~d~p~~~~~~~~~~dc   93 (291)
                      ..-|+.|+.=|...|...       ..+...++|... ...|-+=+.|||.=...+. ...-||.|... ..++-....=
T Consensus         8 ~~TH~~I~~qAl~iL~nd~~~~~~~~~k~~~~~L~~y-~~~l~~Gs~~pD~d~k~~~-~f~~Hfydp~~-~~~~~~~~~w   84 (370)
T 2wxu_A            8 TGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKEN-MHELQLGSTYPDYDKNAYD-LYQDHFWDPDI-DNNFSKDNSW   84 (370)
T ss_dssp             BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGTCTTCCT-TCGGGCCCTTC----------C
T ss_pred             CchHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHH-HHHHHcCCcccccCCcccc-ccccccccCCC-CCCccccccc
Confidence            456999999888888332       222222333211 1246666889997221111 12239998433 2233110000


Q ss_pred             CCcCCCCCCcHHHHHHHHHHH----HccCCCCchhhhhhhHHHHHHHHHHHHhhcCCCCccC-C-CCCCCCCeEEEecCC
Q 022813           94 HDSVGRKNRCVTGAIYNYTMQ----LKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVG-F-IGDKGGNTITVRWYR  167 (291)
Q Consensus        94 ~~~~~~~~~~v~~aI~~~~~~----L~~~~~~~~~~~~~~~~~aL~~LiHlvGDiHQPLH~~-~-~~D~GGN~~~v~~~g  167 (291)
                      --.-.. ..........+.+.    .+...       ...-.+.|...+|+|+|+.||+|+. . .-|.+          
T Consensus        85 ~~~~~~-~~tA~~~~~ky~~~A~~~~~~g~-------~~~A~~~LG~a~Hy~~D~~~P~Ha~n~t~~~~~----------  146 (370)
T 2wxu_A           85 YLAYSI-PDTGESQIRKFSALARYEWQRGN-------YKQATFYLGEAMHYFGDIDTPYHPANVTAVDSA----------  146 (370)
T ss_dssp             TTTBCB-CCCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHHTSSTTTTTCCTTTCT----------
T ss_pred             ccccCC-CCcHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHhhcCCCCcccccccccCCc----------
Confidence            000000 01123333333333    22222       2345689999999999999999995 1 11111          


Q ss_pred             CcCCchHHHhhhhHhhHhhhcCCchHHHHHHHHHHhhccCccchhhhhhhccCCCCCChhhhHHHHHHH----HHHHccc
Q 022813          168 RKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSL----ACKFAYR  243 (291)
Q Consensus       168 ~~~nLH~~WDs~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~Wa~ES~~~----a~~~vY~  243 (291)
                          -|+-.+.-+..... .+ ...            +........-+..  .....+|.+|+.|....    |.+.-|+
T Consensus       147 ----gH~~fE~~V~~~~~-~y-~~~------------t~g~~~~~~~y~~--~~~~~~~~~Wv~e~ak~~Ak~a~~~Y~~  206 (370)
T 2wxu_A          147 ----GHVKFETFAEERKE-QY-KIN------------TAGCKTNEAFYTD--ILKNKDFNAWSKEYARGFAKTGKSIYYS  206 (370)
T ss_dssp             ----HHHHHHHHHHHHGG-GG-CCS------------CCSSCTTSHHHHH--HHHCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHhhh-he-eec------------cCCcccccceeec--ccccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence                17777776543321 11 000            0000000000000  00123788999988775    5542333


Q ss_pred             CCCCCCCCCHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcch
Q 022813          244 NATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQ  285 (291)
Q Consensus       244 ~~~~~~~ls~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~~~~  285 (291)
                      ... ......+|    ..+++.+|..|=..+|..|..+|...
T Consensus       207 ~~~-~~~~~~~~----~~~a~~~L~~AQ~~TAGfl~~f~~~v  243 (370)
T 2wxu_A          207 HAS-MSHSWDDW----DYAAKVTLANSQKGTAGYIYRFLHDV  243 (370)
T ss_dssp             TTS-TTSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcc-ccCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            322 11223455    56677888888888888887777643

>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3

Probab=95.81  E-value=0.01  Score=54.80  Aligned_cols=220  Identities=17%  Similarity=0.129  Sum_probs=107.4

Q ss_pred             hhHHHHHHHHHhccCCHH-------HHHHHHHhCCCCCCCChhccccccccccccCCCCccccccCCCCCCCCccccCCC
Q 022813           21 KEGHFAICKIAEGYLTED-------ALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDC   93 (291)
Q Consensus        21 ~~GH~~Va~IA~~~L~~~-------~~~~l~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~wHy~d~p~~~~~~~~~~dc   93 (291)
                      ..-|..|+.=|...|...       ..+.-.++|... ...|-+=+.|||.=...+. ...-||.|. ....++-....=
T Consensus         8 ~~TH~~I~~qAl~iL~nd~~~~~~~~~k~~~~~L~~y-~~~l~~Gs~~pD~d~k~~~-~f~~Hfydp-~~~~~~~~~~~w   84 (370)
T 1olp_A            8 TGTHSVIVTQAIEMLKHDLSKDEPEAIRNDLSILEKN-LHKFQLGSTFPDYDPNAYS-LYQDHFWDP-DTDHNFTQDNKW   84 (370)
T ss_dssp             BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGGCTTCCT-TCGGGCCBT-TTTBCHHHHSGG
T ss_pred             CchHHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHH-HHHHHcCCcccccCCcccc-ccccccccC-CCCCCccccccc
Confidence            456999999998888332       223333333221 1356677899998221111 122399984 322333100000


Q ss_pred             CCcCCCCCCcHHHHHHHHHHH----HccCCCCchhhhhhhHHHHHHHHHHHHhhcCCCCccCCCCCCCCCeEEEecCCCc
Q 022813           94 HDSVGRKNRCVTGAIYNYTMQ----LKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRK  169 (291)
Q Consensus        94 ~~~~~~~~~~v~~aI~~~~~~----L~~~~~~~~~~~~~~~~~aL~~LiHlvGDiHQPLH~~~~~D~GGN~~~v~~~g~~  169 (291)
                      --.-.. ..........+.+.    .+...       ...-.+.|...+|+|+|+.||+|+..            +....
T Consensus        85 ~~~~~~-~~tA~~~~~ky~~~A~~~~~~g~-------~~~A~~~LG~a~Hy~~D~~~P~Ha~n------------~t~~~  144 (370)
T 1olp_A           85 YLSYAV-PDNAESQTRKFATLAKNEWDKGN-------YEKAAWYLGQGMHYFGDLNTPYHAAN------------VTAVD  144 (370)
T ss_dssp             GGGGCC-SCCHHHHHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHHHHHTSHHHHTT------------CCTTT
T ss_pred             ccccCC-CCcHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHhhcCCCCccccc------------ccccC
Confidence            000000 01122223333332    22222       23456899999999999999999941            00000


Q ss_pred             CCchHHHhhhhHhhHhhhcCCchHHHHHHHHHHhh-ccCccchhhhhhhccCCCCCChhhhHHHHHHH----HHHHcccC
Q 022813          170 TNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNI-TDGWSNDVSSWENCANNQTVCPNGYASESVSL----ACKFAYRN  244 (291)
Q Consensus       170 ~nLH~~WDs~l~~~~~~~~~~~~~~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~~~~~~Wa~ES~~~----a~~~vY~~  244 (291)
                      +.-|+-.+.-+..... .+              .+ +........-+.  ......+|.+|+.|....    |.+.-|+.
T Consensus       145 ~~gH~~yE~~V~~~~~-~y--------------~i~t~g~~~~~~~y~--~~~~~~~~~~Wi~e~a~~~Ak~a~~~Y~~~  207 (370)
T 1olp_A          145 SPGHVKFETYAEERKD-TY--------------RLDTTGYNTDDAFYK--DTLKNDNFNEWSKGYCKYWAKKAKNLYYSH  207 (370)
T ss_dssp             CHHHHHHHHHHHHHGG-GG--------------CCSCCSSCTTSHHHH--GGGSCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHhhh-he--------------eeccCCcccccceee--cccccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1117766666543321 11              01 000000000000  001134788999988774    44422222


Q ss_pred             CCCCCCCCHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcch
Q 022813          245 ATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQ  285 (291)
Q Consensus       245 ~~~~~~ls~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~~~~  285 (291)
                      .. ......+|    ..+++++|..|=..+|..|..+|...
T Consensus       208 ~~-~~~~~~~~----~~~a~~~L~~AQ~~TAGfl~~f~~~v  243 (370)
T 1olp_A          208 AT-MSNSWDDW----EYAASHGVGNAQKGVAGYLYRFLNDV  243 (370)
T ss_dssp             CS-TTSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc-ccCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11 11223455    67777889999888998888777643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	291
d1ak0a_	264	a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [	1e-79
d1ah7a_	245	a.124.1.1 (A:) Bacterial phosholipase C {Bacillus	1e-52

>d1ak0a_ a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [TaxId: 5077]} Length = 264

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: P1 nuclease
domain: P1 nuclease
species: Penicillium citrinum [TaxId: 5077]

 Score =  240 bits (612), Expect = 1e-79
 Identities = 82/275 (29%), Positives = 127/275 (46%), Gaps = 22/275 (8%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 77  YVDTPDFM---CNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D  D     CN  Y RDC       + C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGS-----SGCSISAIANYTQRVS-----DSSLSSENHAEA 110

Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAY-AVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 194 AVMIQSIQRNITDG-WSNDVSSWENC--ANNQTVCPNGYASESVSLACKFAYRNA---TP 247
               +++ +NI  G ++     W      +        +AS++ +L C     +      
Sbjct: 170 ESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQ 229

Query: 248 GTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIF 282
              L   Y+ + +  +E ++A+ G RLA  +N I 
Sbjct: 230 TGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIH 264

>d1ah7a_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus [TaxId: 1396]} Length = 245

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Bacterial phosholipase C
species: Bacillus cereus [TaxId: 1396]

 Score =  170 bits (432), Expect = 1e-52
 Identities = 32/267 (11%), Positives = 66/267 (24%), Gaps = 39/267 (14%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLP--DSAEGDLANVCSWADEVR-FHMRWSSPL 75
            G   H  I   A   ++ +     ++ +   +    +L N    AD    ++   +   
Sbjct: 9   EGVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNEWRTELENGIYAADYENPYYDNSTFAS 68

Query: 76  HYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALM 135
           H+ D  +    Y                       + +  +S     +    +     L 
Sbjct: 69  HFYDPDN-GKTYIPFAKQ---------AKETGAKYFKLAGESYKNKDMKQAFF----YLG 114

Query: 136 FLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAV 195
              H++GDV+QP+H                       H  ++  +               
Sbjct: 115 LSLHYLGDVNQPMHAA----------NFTNLSYPQGFHSKYENFVDTIKDNYKVTDGN-- 162

Query: 196 MIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLEDDY 255
                     +    +   W        V    Y+         + +  A       D +
Sbjct: 163 -------GYWNWKGTNPEEW--IHGAAVVAKQDYSGIVNDNTKDW-FVKAAVSQEYADKW 212

Query: 256 FLTRLPIVEKRLAQSGIRLAATLNRIF 282
                P+  KRL  +    A  +   F
Sbjct: 213 RAEVTPMTGKRLMDAQRVTAGYIQLWF 239

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	291
d1ak0a_	264	P1 nuclease {Penicillium citrinum [TaxId: 5077]}	100.0
d1ah7a_	245	Bacterial phosholipase C {Bacillus cereus [TaxId:	100.0
d1ca1a1	249	Alpha-toxin, N-terminal domain {Clostridium perfri	97.37
d1olpa1	249	Alpha-toxin, N-terminal domain {Clostridium absonu	96.69

>d1ak0a_ a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [TaxId: 5077]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: P1 nuclease
domain: P1 nuclease
species: Penicillium citrinum [TaxId: 5077]

Probab=100.00  E-value=2.4e-69  Score=485.05  Aligned_cols=253  Identities=32%  Similarity=0.544  Sum_probs=217.3

Q ss_pred             CChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCCChhcccccccccc--ccCCCCccccccCCCCC---CCCccccCCC
Q 022813           19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWSSPLHYVDTPDF---MCNYKYCRDC   93 (291)
Q Consensus        19 W~~~GH~~Va~IA~~~L~~~~~~~l~~lL~~~~~~~l~~~a~WaD~ir--~~~~~~~~wHy~d~p~~---~~~~~~~~dc   93 (291)
                      ||.+|||+||+||+++|+|+++++|++||++....+|+++|+|||+||  ..++|+.+|||+|+|.+   .|.+.+.++|
T Consensus         1 Wg~~GH~~Va~iA~~~L~~~~~~~v~~iL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyvn~p~~~~~~~~~~~~~~~   80 (264)
T d1ak0a_           1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC   80 (264)
T ss_dssp             CCHHHHHHHHHHHHHHSCHHHHHHHHHHHTCCSTTTTGGGTTHHHHHHTSTTTGGGGGGGCCCCCCBTTTBCCCCHHHHS
T ss_pred             CCcHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCceeeeeChHhhcCCCccchhhccccCCCCCCCCccccccccccC
Confidence            999999999999999999999999999999876678999999999999  46789999999999865   3556667788


Q ss_pred             CCcCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhhHHHHHHHHHHHHhhcCCCCccCCCCCCCCCeEEEecCCCcCCch
Q 022813           94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLH  173 (291)
Q Consensus        94 ~~~~~~~~~~v~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~~LiHlvGDiHQPLH~~~~~D~GGN~~~v~~~g~~~nLH  173 (291)
                           ++++||++||.+++++|++.+.     +.+++++|||||+|||||||||||++ ..|+|||+++|.|+|+++|||
T Consensus        81 -----~~~~~i~~ai~~~~~~l~~~~~-----s~~~~~~aL~~LvHlvGDiHQPLH~~-~~D~GGN~i~V~~~g~~~NLH  149 (264)
T d1ak0a_          81 -----GSSGCSISAIANYTQRVSDSSL-----SSENHAEALRFLVHFIGDMTQPLHDE-AYAVGGNKINVTFDGYHDNLH  149 (264)
T ss_dssp             -----CTTCCHHHHHHHHHHHHTCTTS-----CHHHHHHHHHHHHHHHHHTTSGGGGC-CHHHHTTTCEEEETTEEEEHH
T ss_pred             -----CCCccHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHhhcccccccc-CcCCCCCeeEEEECCccCcHH
Confidence                 4589999999999999999876     46889999999999999999999987 789999999999999999999


Q ss_pred             HHHhhhhHhhHhhhcCCchHHHHHHHHHHhhcc-CccchhhhhhhccCCC--CCChhhhHHHHHHHHHHHcccCCC---C
Q 022813          174 HVWDTMIIDSALKTYYDSDIAVMIQSIQRNITD-GWSNDVSSWENCANNQ--TVCPNGYASESVSLACKFAYRNAT---P  247 (291)
Q Consensus       174 ~~WDs~l~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~~~~~~~~~~~~--~~~~~~Wa~ES~~~a~~~vY~~~~---~  247 (291)
                      +||||+++++....+.......++..+..++.. .+.++...|..+....  ..||.+|+.||+++||+++|+...   .
T Consensus       150 ~vWDs~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Es~~la~~~~y~~~~~~~~  229 (264)
T d1ak0a_         150 SDWDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQ  229 (264)
T ss_dssp             HHHHTHHHHHHHSCCSHHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTTSTTCSGGGS
T ss_pred             HHHhhhHHhhhccccccchHHHHHHHHHHhccccccHHHhhhhhccccccccccCHHHHHHHHHHHHHHHhhcccccccc
Confidence            999999998876655444444566666655543 3556677776554322  358999999999999999887543   3


Q ss_pred             CCCCCHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Q 022813          248 GTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIF  282 (291)
Q Consensus       248 ~~~ls~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~  282 (291)
                      +.+|+++|+.++++++++||++||+|||.+||+||
T Consensus       230 ~~~l~~~Y~~~~~~i~~~ql~~AG~RLA~~LN~if  264 (264)
T d1ak0a_         230 TGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIH  264 (264)
T ss_dssp             SSBCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            45799999999999999999999999999999997

>d1ah7a_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Bacterial phosholipase C
species: Bacillus cereus [TaxId: 1396]

Probab=100.00  E-value=5.5e-41  Score=296.82  Aligned_cols=232  Identities=15%  Similarity=0.085  Sum_probs=170.9

Q ss_pred             cccCChhHHHHHHHHHhccCCHHHH---HHHHHhCCCCCCCChhccccccccccccC-CCCccccccCCCCCCCCccccC
Q 022813           16 VLGWGKEGHFAICKIAEGYLTEDAL---AAVKELLPDSAEGDLANVCSWADEVRFHM-RWSSPLHYVDTPDFMCNYKYCR   91 (291)
Q Consensus        16 a~AW~~~GH~~Va~IA~~~L~~~~~---~~l~~lL~~~~~~~l~~~a~WaD~ir~~~-~~~~~wHy~d~p~~~~~~~~~~   91 (291)
                      ..+||..||+.|+.+|+..|+++..   +.+-++|... ..+|.+.++|||+++..+ .++.+|||+|.|.+ +++....
T Consensus         6 ~~~~g~~tH~~I~~~A~~~L~~d~~~~~~~~~~~l~~y-~~~l~~g~~waD~~~~~~~~~~~~~Hf~~~~~~-~~~~~~~   83 (245)
T d1ah7a_           6 KHKEGVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNEW-RTELENGIYAADYENPYYDNSTFASHFYDPDNG-KTYIPFA   83 (245)
T ss_dssp             SSCGGGCHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHT-HHHHHHHHHHTTTSTTTTTTTTCGGGCCBTTTT-BCSSTTC
T ss_pred             CCCCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHhcCcCccccccccccccCCceeeeCCCC-CCcCCCC
Confidence            5699999999999999999988753   3333444321 247999999999999654 57889999996654 5555433


Q ss_pred             CCCCcCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhhHHHHHHHHHHHHhhcCCCCccCCCCCCCCCeEEEecCCCcCC
Q 022813           92 DCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTN  171 (291)
Q Consensus        92 dc~~~~~~~~~~v~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~~LiHlvGDiHQPLH~~~~~D~GGN~~~v~~~g~~~n  171 (291)
                      +|      ..+++..++..+.+.+++.+.       .+..++|++++|||||||||||++          +|.++|+.+|
T Consensus        84 ~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~h~~~d~~qP~H~~----------~v~~~~~~~N  140 (245)
T d1ah7a_          84 KQ------AKETGAKYFKLAGESYKNKDM-------KQAFFYLGLSLHYLGDVNQPMHAA----------NFTNLSYPQG  140 (245)
T ss_dssp             CC------HHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHTSTTTTT----------TCCTTSSSTT
T ss_pred             CC------hHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHhhcCCCcccc----------ccccCCCCCC
Confidence            33      246677888888888887643       456799999999999999999997          2667889999


Q ss_pred             chHHHhhhhHhhHhhhc--CCchHHHHHHHHHHhhccCccchhhhhhhccCCCCCChhhhHHHHHHHHHHHcccCCCCCC
Q 022813          172 LHHVWDTMIIDSALKTY--YDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGT  249 (291)
Q Consensus       172 LH~~WDs~l~~~~~~~~--~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~Wa~ES~~~a~~~vY~~~~~~~  249 (291)
                      ||++||+.+++......  ....+.        .+   ......+|..  .....++.+|+.||+.+++. +|.....+.
T Consensus       141 LH~~WDs~i~~~~~~~~~~~~~~~~--------~~---~~~~~~~~i~--~~~~~~~~~w~~es~~~~~~-~Y~~~~~~~  206 (245)
T d1ah7a_         141 FHSKYENFVDTIKDNYKVTDGNGYW--------NW---KGTNPEEWIH--GAAVVAKQDYSGIVNDNTKD-WFVKAAVSQ  206 (245)
T ss_dssp             HHHHHHHHHHHHGGGGCCCSSCCCT--------TC---SCSCHHHHHH--HHHHHHHHTGGGTSSHHHHH-HHHHHTTCH
T ss_pred             cHHHHHhhHHHhhhhhhhhHHHHHH--------HH---hccCHHHHHH--HHhhcCHHHHHHHHHHHHHH-HhccCCCCC
Confidence            99999999987532110  000000        00   0011222211  01113688999999998877 788777777


Q ss_pred             CCCHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 022813          250 TLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQI  286 (291)
Q Consensus       250 ~ls~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~~~~~  286 (291)
                      .++++|..++.|++++||.+||+|||.+||.+|++..
T Consensus       207 ~l~~~Y~~~~~~~v~~rL~~ag~rlAg~Ln~~Fd~~~  243 (245)
T d1ah7a_         207 EYADKWRAEVTPMTGKRLMDAQRVTAGYIQLWFDTYG  243 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999998653

>d1ca1a1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Alpha-toxin, N-terminal domain
species: Clostridium perfringens, different strains [TaxId: 1502]

Probab=97.37  E-value=0.001  Score=56.17  Aligned_cols=220  Identities=15%  Similarity=0.074  Sum_probs=106.2

Q ss_pred             hHHHHHHHHHhccCCHH--------HHHHHHHhCCCCCCCChhccccccccccccCCCCccccccCCCCCCCCccccCCC
Q 022813           22 EGHFAICKIAEGYLTED--------ALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDC   93 (291)
Q Consensus        22 ~GH~~Va~IA~~~L~~~--------~~~~l~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~wHy~d~p~~~~~~~~~~dc   93 (291)
                      .-|..|+.=|...|...        .+..++.|. .. ...+..=+.|||.=...++ +-..||.| |....++-....-
T Consensus         9 ~TH~~i~~qA~~iL~nD~~~~~~~~~~~~~~~L~-~y-~~~~~~G~~~~D~~~~~y~-~f~~HFy~-p~~~k~~~g~~~~   84 (249)
T d1ca1a1           9 GTHAMIVTQGVSILENDLSKNEPESVRKNLEILK-EN-MHELQLGSTYPDYDKNAYD-LYQDHFWD-PDTDNNFSKDNSW   84 (249)
T ss_dssp             SHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHH-HT-HHHHHHHHHGGGTCTTCCT-TCGGGCCC-TTTCSSTTTCSCC
T ss_pred             chHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH-HH-HHHHhcCCcCcccCCccCc-cccccccc-CCCCCCccCcccc
Confidence            46999999998886433        122222221 11 1356777889996443222 23459999 4333333211000


Q ss_pred             CCcCCCCCCcHHHHHHHHHHH-HccCCCCchhhhhhhHHHHHHHHHHHHhhcCCCCccCCCCCCCCCeEEEecCCCcCCc
Q 022813           94 HDSVGRKNRCVTGAIYNYTMQ-LKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNL  172 (291)
Q Consensus        94 ~~~~~~~~~~v~~aI~~~~~~-L~~~~~~~~~~~~~~~~~aL~~LiHlvGDiHQPLH~~~~~D~GGN~~~v~~~g~~~nL  172 (291)
                      .-..+. ..........+... +..-...    ....-.+.|....|+++|+.||+|++-            +.....+-
T Consensus        85 ~~~~~~-~~~a~~~~~ky~~~A~~~~~~~----~~~~a~~~LG~a~Hy~~D~~~P~Ha~N------------~t~~~~~~  147 (249)
T d1ca1a1          85 YLAYSI-PDTGESQIRKFSALARYEWQRG----NYKQATFYLGEAMHYFGDIDTPYHPAN------------VTAVDSAG  147 (249)
T ss_dssp             CCSSCC-CCCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTSSTTTTT------------CCTTTCTH
T ss_pred             cccccc-cchHHHHHHHHHHHHHHHHHcc----cHHHHHHHHHHHHHHHhcCCCcccccc------------ccccCccc
Confidence            000001 12233333333332 2111111    123345789999999999999999861            11122345


Q ss_pred             hHHHhhhhHhhHhhhcC----CchHH-HHHHHHHHhhccCccchhhhhhhccCCCCCChhhhHHHHHHH----HHHHccc
Q 022813          173 HHVWDTMIIDSALKTYY----DSDIA-VMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSL----ACKFAYR  243 (291)
Q Consensus       173 H~~WDs~l~~~~~~~~~----~~~~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~Wa~ES~~~----a~~~vY~  243 (291)
                      |+..++-+.... .++-    +.... .....              .+.      ..++..|..|..+.    +.+.-|.
T Consensus       148 H~~yEn~V~~~~-d~ykv~~~g~~~~~~~~~d--------------~~~------~~~~~~w~~dy~r~~a~~a~~~y~~  206 (249)
T d1ca1a1         148 HVKFETFAEERK-EQYKINTVGCKTNEDFYAD--------------ILK------NKDFNAWSKEYARGFAKTGKSIYYS  206 (249)
T ss_dssp             HHHHHHHHHHHG-GGGCCSCCSSCTTSHHHHH--------------HHH------CSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-hhheecccccccCcccccc--------------ccc------chhHHHHHHHHHHHHHHHhHHHHhh
Confidence            888877754221 0110    00000 00000              000      12455666655443    3221122


Q ss_pred             CCCCCCCCCHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Q 022813          244 NATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKI  288 (291)
Q Consensus       244 ~~~~~~~ls~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~~~~~~~  288 (291)
                      .. ....-..+    ..+++.++|..|-.=.|..|-.+|....++
T Consensus       207 ~~-~~~~~~~~----~~~~t~~~L~~AQr~TAGfl~~f~~~vs~~  246 (249)
T d1ca1a1         207 HA-SMSHSWDD----WDYAAKVTLANSQKGTAGYIYRFLHDVSEG  246 (249)
T ss_dssp             TT-STTSCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cc-cccccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            11 11111223    357888888888888888888888755443

>d1olpa1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain {Clostridium absonum [TaxId: 29369]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Alpha-toxin, N-terminal domain
species: Clostridium absonum [TaxId: 29369]

Probab=96.69  E-value=0.0004  Score=58.80  Aligned_cols=220  Identities=15%  Similarity=0.068  Sum_probs=106.3

Q ss_pred             hhHHHHHHHHHhccCCH-------HHHHHHHHhCCCCCCCChhccccccccccccCCCCccccccCCCCCCCCccccCCC
Q 022813           21 KEGHFAICKIAEGYLTE-------DALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDC   93 (291)
Q Consensus        21 ~~GH~~Va~IA~~~L~~-------~~~~~l~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~wHy~d~p~~~~~~~~~~dc   93 (291)
                      ..-|.-|+.=|...|..       +....-.++|... ..+|..=+.|||.=...+ .+-.-||.|... ..++.-..+-
T Consensus         8 ~~TH~~I~~qAi~IL~nd~~~~~~~~~~~~~~~l~~~-~~~~~~G~~~aD~d~~~y-~~f~~HFy~pdt-gk~~~g~~~~   84 (249)
T d1olpa1           8 TGTHSVIVTQAIEMLKHDLSKDEPEAIRNDLSILEKN-LHKFQLGSTFPDYDPNAY-SLYQDHFWDPDT-DHNFTQDNKW   84 (249)
T ss_dssp             BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGGCTTCC-TTCGGGCCBTTT-TBCHHHHSGG
T ss_pred             cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHh-HHHHhcCCcCccCCCccc-cccccccccCCC-CCCCcCCccc
Confidence            34689999888888832       2222111222211 124666778999522111 111239999432 2222100000


Q ss_pred             CCcCCCCCCcHHHHHHHHHHH----HccCCCCchhhhhhhHHHHHHHHHHHHhhcCCCCccCCCCCCCCCeEEEecCCCc
Q 022813           94 HDSVGRKNRCVTGAIYNYTMQ----LKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRK  169 (291)
Q Consensus        94 ~~~~~~~~~~v~~aI~~~~~~----L~~~~~~~~~~~~~~~~~aL~~LiHlvGDiHQPLH~~~~~D~GGN~~~v~~~g~~  169 (291)
                      .... .-..........+.+.    ++...       ...-.+.|....|+++|+-||+|++       |..     ...
T Consensus        85 ~~~~-~~~~~A~~~~~ky~~~A~~~~~~g~-------~~~a~~~LG~a~Hy~~D~~qP~Haa-------N~t-----~v~  144 (249)
T d1olpa1          85 YLSY-AVPDNAESQTRKFATLAKNEWDKGN-------YEKAAWYLGQGMHYFGDLNTPYHAA-------NVT-----AVD  144 (249)
T ss_dssp             GGGG-CCSCCHHHHHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHHHHHTSHHHHT-------TCC-----TTT
T ss_pred             cccc-cCCccHHHHHHHHHHHHHHHHHccC-------HHHHHHHHHhHhHHhhcCCCCcccc-------ccc-----ccc
Confidence            0000 0011233333333332    22222       2334589999999999999999985       211     112


Q ss_pred             CCchHHHhhhhHhhHhhhcCCchHHHHHHHHHHhhccCcc-c--hhhhhhhccCCCCCChhhhHHHHHHHHHHHc---c-
Q 022813          170 TNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWS-N--DVSSWENCANNQTVCPNGYASESVSLACKFA---Y-  242 (291)
Q Consensus       170 ~nLH~~WDs~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~--~~~~~~~~~~~~~~~~~~Wa~ES~~~a~~~v---Y-  242 (291)
                      .+.|+..++-+-... .++ .-..           ...+. .  ....|      ...+|.+|..|..+.+...+   | 
T Consensus       145 ~~~H~~yE~yV~~~~-~~Y-~v~~-----------~g~~~~~~~~~~~~------~~~~~~ewi~e~a~~~a~~a~~iy~  205 (249)
T d1olpa1         145 SPGHVKFETYAEERK-DTY-RLDT-----------TGYNTDDAFYKDTL------KNDNFNEWSKGYCKYWAKKAKNLYY  205 (249)
T ss_dssp             CHHHHHHHHHHHHHG-GGG-CCSC-----------CSSCTTSHHHHGGG------SCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhhh-hhh-eecc-----------cccccccccccccc------cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            235877776653221 011 0000           00000 0  00111      12467788887776654432   3 


Q ss_pred             cCCCCCCCCCHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcchhh
Q 022813          243 RNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIK  287 (291)
Q Consensus       243 ~~~~~~~~ls~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~~~~~~  287 (291)
                      +.. ......    .....++.++|..|-.=.|..|...|.+..+
T Consensus       206 ~~~-~~~~~~----~~~~~~~~~~L~~Aq~~TAGfi~~f~~~v~~  245 (249)
T d1olpa1         206 SHA-TMSNSW----DDWEYAASHGVGNAQKGVAGYLYRFLNDVSN  245 (249)
T ss_dssp             HHC-STTSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             Hhc-cccccH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Confidence            221 111222    2346788888889988889888888875544