Citrus Sinensis ID: 022844

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVRLLCSKFL
Secondary Structure (PSIPRED)
cccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHcccccccccEEEEEEccccccccccccccEEEEEEccEEEEcccEEEEEccccccEEEEEEEEcccccEEEEEEcccccccccccccccEEEEEEEcccEEEcccccccccccccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEcccHcHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHcccccccccccHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHccHHHHHHHcHHHccccccEEEEccEccEcccHHHcccEEEEcccEEEEEEEEEEEEccccccEEEEEEEccHHHHHHcEEEEcccccccccccHHcccccccccEEEEEccccccHHHccccccccHEEHHHcccccccc
Coil and Loop (DISEMBL)
mtihsskhqddvdknarssyfnlpaldisvafpqatpaskfppcasdyyqfddLLTSEEQAVRMKVRECMEKEIAPIMAEYwekaefpfhvipklgALRVaggtikgygcpghsvTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCgseeqkqkyLPSLAQLNTIACWaltepaygsdasalnttatkveggwilegqkrwignstFADVLVIFARNTttnqingylvkkdapgltvtkIENKIglrivqngdillkkvfvpdedrlpgvnsfqdTSKVRLLCSKFL
Flexible Loop (DISEMBL)
mtihsskhqddvdknARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNtttnqingylvkkdapgltVTKIenkiglrivqngdILLKKVfvpdedrlpgvnsfqdtskvrllcskfl
Low Complexity Region (SEG)
MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVRLLCSKFL
Disordered region (IsUnstruct)
*******************YFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN*F******RLL*****
Disordered Region (DISOPRED)
*******************************************CASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVRLLCSKF*
Disordered Region (DISEMBL)
*************KNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVRLLCSKFL
Disordered Region (DISPRO)
*********DDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVRLLCSKF*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVRLLCSKFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q96329	436	Acyl-coenzyme A oxidase 4	yes	no	0.972	0.649	0.795	1e-135
Q20772	409	Probable glutaryl-CoA deh	yes	no	0.797	0.567	0.361	2e-39
Q2KHZ9	438	Glutaryl-CoA dehydrogenas	yes	no	0.776	0.515	0.375	4e-35
Q60759	438	Glutaryl-CoA dehydrogenas	yes	no	0.831	0.552	0.365	5e-35
Q8HXX8	438	Glutaryl-CoA dehydrogenas	N/A	no	0.776	0.515	0.371	1e-34
Q92947	438	Glutaryl-CoA dehydrogenas	yes	no	0.776	0.515	0.375	2e-34
P81140	408	Glutaryl-CoA dehydrogenas	no	no	0.776	0.553	0.378	3e-33
P45857	379	Acyl-CoA dehydrogenase OS	yes	no	0.742	0.569	0.382	6e-33
P52042	379	Acyl-CoA dehydrogenase, s	yes	no	0.745	0.572	0.348	7e-30
Q54R47	420	Glutaryl-CoA dehydrogenas	no	no	0.835	0.578	0.325	1e-29

>sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1

 Score =  483 bits (1242), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/283 (79%), Positives = 249/283 (87%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240

Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
            TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKV
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKV 283

Catalyzes the desaturation of short-chain acyl-CoAs to 2-trans-enoyl-CoAs. Active on butyryl-CoA (C4), hexanoyl-CoA (C6), and octanoyl-CoA (C8). Has no activity as acyl-CoA dehydrogenase or on crotonyl-CoA (an unsaturated C4:1 carbocyclic ester) or glutaryl-CoA (a dicarboxylic ester).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 6

>sp|Q20772|GCDH_CAEEL Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/235 (36%), Positives = 134/235 (57%), Gaps = 3/235 (1%)

Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
           D +Q  D LT +E+++ +  RE  ++ + P + E +   +F   +IP++G++ + G   +
Sbjct: 24  DAFQLSDQLTEDERSLMLSAREYCQERLLPRVTEAYRTEKFDPSLIPEMGSMGLLGAPYQ 83

Query: 107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
           GYGC G S  G  +   E+ RVD+   + + V +SL +  I   GSE+QKQKY+P LA  
Sbjct: 84  GYGCAGTSTVGYGLIAREVERVDSGYRSTMSVQTSLVIGPIYNYGSEDQKQKYIPDLASG 143

Query: 167 NTIACWALTEPAYGSDASALNTTAT--KVEGGWILEGQKRWIGNSTFADVLVIFARNTT- 223
             I C+ LTEP +GS+   + T AT  +    + L G K WI NS  +DV+V++AR+   
Sbjct: 144 KKIGCFGLTEPNHGSNPGGMETKATWDETTKTYKLNGSKTWISNSPVSDVMVVWARSARH 203

Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
            N+I G+++++   GLT  KIE K+ LR    G I +  V VP+E+ LP     Q
Sbjct: 204 NNKIKGFILERGMKGLTTPKIEGKLSLRASITGQIAMDDVPVPEENLLPNAEGLQ 258

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|Q2KHZ9|GCDH_BOVIN Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=GCDH PE=2 SV=1

 Score =  148 bits (374), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 126/229 (55%), Gaps = 3/229 (1%)

Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L + G TI+GY C
Sbjct: 56  LEEQLTADEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGMLGPTIQGYSC 115

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V SSL M  I   GSEEQKQKYLP LA+   + 
Sbjct: 116 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMYPIYAYGSEEQKQKYLPRLAKGELLG 175

Query: 171 CWALTEPAYGSDASALNTTATK--VEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
           C+ LTEP +GSD S + T A        +IL G K WI NS  AD+L+++AR    + I 
Sbjct: 176 CFGLTEPNHGSDPSGMETRARHNPSSRSYILSGSKTWITNSPVADLLIVWAR-CEDSCIR 234

Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
           G+L++K   GL+  +IE K  LR    G I++  V VP+E+ LPGV+  
Sbjct: 235 GFLLEKGMRGLSTPRIEGKFSLRASSTGMIIMDDVEVPEENVLPGVSGL 283

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|Q60759|GCDH_MOUSE Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh PE=2 SV=2

 Score =  148 bits (373), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/249 (36%), Positives = 133/249 (53%), Gaps = 7/249 (2%)

Query: 34  QATPASKFPPCA--SDYYQFDDLLTSEEQAVRMKVRE-CMEKEIAPIMAEYWEKAEFPFH 90
           Q  PA    P     D    ++ LT++E+ +R   R  C E+ ++ I+     +  F   
Sbjct: 37  QIRPAKSSRPVFDWKDPLILEEQLTADEKLIRDTFRNYCQERLMSRILLANRNEV-FHRD 95

Query: 91  VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALC 150
           ++ ++G L V G TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   
Sbjct: 96  IVYEMGELGVLGPTIKGYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTY 155

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATK--VEGGWILEGQKRWIGN 208
           GSEEQ+QKYLP LA+   + C+ LTEP +GSD   + T A        + L G K WI N
Sbjct: 156 GSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTLSGTKTWITN 215

Query: 209 STFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDE 268
           S  AD+ +++AR    N I G++++K   GL+  +IE K  LR    G I++  V VP+E
Sbjct: 216 SPVADLFIVWAR-CEDNCIRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEE 274

Query: 269 DRLPGVNSF 277
           + LP V+S 
Sbjct: 275 NVLPNVSSL 283

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|Q8HXX8|GCDH_MACFA Glutaryl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GCDH PE=2 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 124/229 (54%), Gaps = 3/229 (1%)

Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 56  LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISQMGELGVLGPTIKGYGC 115

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V S L M  I   GSEEQ+QKYLP LA+   + 
Sbjct: 116 AGVSSVAYGLLARELERVDSGYRSAMSVQSPLVMHPIYAYGSEEQRQKYLPRLAKGELLG 175

Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
           C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR     +I 
Sbjct: 176 CFGLTEPNSGSDPSSMETRARYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGRIR 234

Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
           G+L++K   GL+  +I+ K  LR    G I++  V VP+E+ LPG +S 
Sbjct: 235 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENMLPGASSL 283

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|Q92947|GCDH_HUMAN Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 3/229 (1%)

Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 56  LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 115

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + 
Sbjct: 116 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 175

Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
           C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR      I 
Sbjct: 176 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIR 234

Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
           G+L++K   GL+  +I+ K  LR    G I++  V VP+E+ LPG +S 
Sbjct: 235 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 283

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor. Isoform Short is inactive.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|P81140|GCDH_PIG Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 124/230 (53%), Gaps = 4/230 (1%)

Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 25  LEEQLTADEILIRDTFRTYCQEHLMPRIVLANRNEVFHREIISEMGELGVLGPTIKGYGC 84

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEE-QKQKYLPSLAQLNTI 169
            G S     +   E+ RVD+   + + V SSL M  I   GSEE Q+QKYLP LA+   +
Sbjct: 85  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQQQQKYLPRLAKGELL 144

Query: 170 ACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQI 227
            C+ LTEP +GSD  ++ T A        + L G K WI NS  AD+ V++AR    N I
Sbjct: 145 GCFGLTEPNHGSDPGSMETRALHNPSNRSYTLNGAKTWITNSPVADLFVVWAR-CEDNCI 203

Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
            G+L++K   GL+  KIE K  LR    G I++  V VP+E+ LP  +S 
Sbjct: 204 RGFLLEKGMRGLSAPKIEGKFSLRASATGMIIMDDVEVPEENVLPKASSL 253

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC PE=2 SV=3

 Score =  141 bits (355), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 126/222 (56%), Gaps = 6/222 (2%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGGTI-KGYGCPG 112
           +T E+  +R  VR+   KEIAP  AE  EK  EFPF +I K+G   + G  + + YG  G
Sbjct: 3   VTQEQVMMRKMVRDFARKEIAP-AAEIMEKTDEFPFQLIKKMGKHGLMGIPVPEQYGGAG 61

Query: 113 HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
             V    +AI EI+R+ A+    + VH+S+    I   G+EEQK KY+P+LA  + +  +
Sbjct: 62  ADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFGNEEQKMKYIPNLASGDHLGAF 121

Query: 173 ALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR---NTTTNQING 229
           ALTEP  GSDA +L TTA K  G ++L G K +I N   AD+ + FA    +   + I+ 
Sbjct: 122 ALTEPHSGSDAGSLRTTAIKKNGKYLLNGSKIFITNGGAADIYITFALTAPDQGRHGISA 181

Query: 230 YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           ++V+K+ PG TV K E K+GL      +++     VP+ + L
Sbjct: 182 FIVEKNTPGFTVGKKERKLGLYGSNTTELIFDNAEVPEANLL 223

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=bcd PE=3 SV=1

 Score =  131 bits (329), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT E++ VR  VRE  E E+ PI AE  E   FP   + K+G   + G    K YG  G 
Sbjct: 5   LTREQELVRQMVREFAENEVKPIAAEIDETERFPMENVKKMGQYGMMGIPFSKEYGGAGG 64

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
            V    IA+ E+++V  +    +  H+SL    I   G+EEQKQKYL  LA+   I  + 
Sbjct: 65  DVLSYIIAVEELSKVCGTTGVILSAHTSLCASLINEHGTEEQKQKYLVPLAKGEKIGAYG 124

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQINGY 230
           LTEP  G+D+ A  T A      +++ G K +I N   AD  VIFA   R   T  I+ +
Sbjct: 125 LTEPNAGTDSGAQQTVAVLEGDHYVINGSKIFITNGGVADTFVIFAMTDRTKGTKGISAF 184

Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +++K   G ++ K+E K+G+R     +++ + + VP E+ +
Sbjct: 185 IIEKGFKGFSIGKVEQKLGIRASSTTELVFEDMIVPVENMI 225

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 1

>sp|Q54R47|GCDH_DICDI Glutaryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gcdh PE=3 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 6/249 (2%)

Query: 31  AFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH 90
           +F    P  KF    +D    + LLT EE  +R +V +  + E+ P +   +   +F   
Sbjct: 27  SFGTIVPGDKFE--WNDPLSLESLLTEEEVMIRDQVNKFCQDELMPRIQMAYRDEKFDRE 84

Query: 91  VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALC 150
           ++ + G + + G TI  YG   H   G  +    + +VD+   + + V SSL M  I   
Sbjct: 85  IMREYGKMGMLGATIPAYGGVSHVAYG--LMANAVEKVDSGYRSAMSVQSSLVMHPINTF 142

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNS 209
           G++ QK KYL  LA  + + C+ LTEP  GSD + + T A K   G ++L G K WI NS
Sbjct: 143 GTDAQKSKYLDGLASGDLVGCFGLTEPNAGSDPAGMQTRAVKNSAGNYVLNGTKTWITNS 202

Query: 210 TFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDED 269
             ADV V++A+      I G++++K   GL+  KIE K+ LR    G I+++ V VP   
Sbjct: 203 PIADVFVVWAK-VENGDIRGFVLEKGMKGLSAPKIEGKLSLRASITGMIVMEDVEVPPTA 261

Query: 270 RLPGVNSFQ 278
             P V   +
Sbjct: 262 MFPEVKGLR 270

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
359481157	439	PREDICTED: acyl-coenzyme A oxidase 4, pe	0.972	0.644	0.855	1e-144
255582668	440	acyl-CoA dehydrogenase, putative [Ricinu	0.972	0.643	0.841	1e-144
224139128	437	predicted protein [Populus trichocarpa]	0.951	0.633	0.855	1e-143
402715756	437	acyl-CoA oxidase 4 [Prunus persica]	0.948	0.631	0.862	1e-143
359481155	446	PREDICTED: acyl-coenzyme A oxidase 4, pe	0.962	0.627	0.853	1e-142
351722526	400	acyl-CoA oxidase [Glycine max] gi|156972	0.972	0.707	0.830	1e-140
224087764	436	predicted protein [Populus trichocarpa]	0.948	0.633	0.826	1e-137
47118098	440	putative short-chain acyl-CoA oxidase [T	0.958	0.634	0.820	1e-136
356521028	421	PREDICTED: acyl-coenzyme A oxidase 4, pe	0.910	0.629	0.856	1e-135
297819888	436	acyl-CoA oxidase 4 [Arabidopsis lyrata s	0.972	0.649	0.795	1e-135

>gi|359481157|ref|XP_003632582.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 2 [Vitis vinifera]

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/283 (85%), Positives = 261/283 (92%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           MTI+SS + DD +K  + SYF LP+LD+SVAFPQATPAS FPPCASDYYQFDDLLT EEQ
Sbjct: 1   MTIYSSNNADDSEKAKKGSYFGLPSLDVSVAFPQATPASIFPPCASDYYQFDDLLTPEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+RMKVR+C+EKEIAPIM EYWEKAEFPFHV+PKL ALR+AGGTIKGYGCPG SVT +AI
Sbjct: 61  ALRMKVRKCVEKEIAPIMTEYWEKAEFPFHVVPKLAALRIAGGTIKGYGCPGLSVTASAI 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
             AE++RVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQLNTIACWALTEP YG
Sbjct: 121 TTAEVSRVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLNTIACWALTEPDYG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS+L TTATKVEGGWILEGQKRWIGNSTFADVL+IFARNTTTNQINGY+VKK APGLT
Sbjct: 181 SDASSLKTTATKVEGGWILEGQKRWIGNSTFADVLIIFARNTTTNQINGYIVKKGAPGLT 240

Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
            TKI+NKIGLRIVQNGDI  KKVFVPDEDRLPGVNSFQDT+KV
Sbjct: 241 ATKIQNKIGLRIVQNGDIQFKKVFVPDEDRLPGVNSFQDTNKV 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582668|ref|XP_002532113.1| acyl-CoA dehydrogenase, putative [Ricinus communis] gi|223528216|gb|EEF30275.1| acyl-CoA dehydrogenase, putative [Ricinus communis]

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 239/284 (84%), Positives = 267/284 (94%), Gaps = 1/284 (0%)

Query: 1   MTIH-SSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEE 59
           MTI+ SSK+QDD+D + +SSYFNLP L++S+AFPQATPAS FPPCASDY+Q DDLLT EE
Sbjct: 1   MTIYASSKNQDDLDHSQKSSYFNLPPLNVSIAFPQATPASIFPPCASDYFQLDDLLTPEE 60

Query: 60  QAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAA 119
           QA+R+KVR+CMEKEIAPIM EYWEKA+FPFHVIPKLG LR+AGGTIKGYGCPG S+TG+A
Sbjct: 61  QAIRIKVRQCMEKEIAPIMTEYWEKAKFPFHVIPKLGTLRIAGGTIKGYGCPGLSLTGSA 120

Query: 120 IAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAY 179
           +A AE+ARVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQL+T+ACWALTEP Y
Sbjct: 121 VATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLSTVACWALTEPEY 180

Query: 180 GSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGL 239
           GSDASAL TTA KVEGGWIL+GQKRWIGNSTFADVLV+FARNT+T QINGY+VKKDAPGL
Sbjct: 181 GSDASALKTTARKVEGGWILDGQKRWIGNSTFADVLVVFARNTSTEQINGYIVKKDAPGL 240

Query: 240 TVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
           T TKIENKIGLR+VQNGDILLK+VF+PDEDRLPGVNSFQDT+KV
Sbjct: 241 TATKIENKIGLRMVQNGDILLKQVFIPDEDRLPGVNSFQDTNKV 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139128|ref|XP_002322987.1| predicted protein [Populus trichocarpa] gi|222867617|gb|EEF04748.1| predicted protein [Populus trichocarpa]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 237/277 (85%), Positives = 265/277 (95%)

Query: 7   KHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKV 66
           K+QD+V++NARSSYFNLP LD+SVAFPQATPAS FPP  SDY+Q  DLLT+E+QA+RM+V
Sbjct: 5   KNQDEVEQNARSSYFNLPPLDVSVAFPQATPASTFPPSVSDYFQISDLLTAEDQAIRMRV 64

Query: 67  RECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIA 126
           R+CMEKEIAPIMAEYWEKA+FPFHVIPKLGAL +AGGTIKGYGCPG S+T +A+AIAE+A
Sbjct: 65  RQCMEKEIAPIMAEYWEKAKFPFHVIPKLGALGIAGGTIKGYGCPGLSITTSAVAIAEVA 124

Query: 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASAL 186
           RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA+ +T+ACWALTEP YGSDAS+L
Sbjct: 125 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAKFSTVACWALTEPDYGSDASSL 184

Query: 187 NTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIEN 246
            TTATKVEGGWILEGQKRWIGNSTFAD+LVIFARNTTT+QINGY+VKKDAPGLTVTKIEN
Sbjct: 185 QTTATKVEGGWILEGQKRWIGNSTFADLLVIFARNTTTDQINGYIVKKDAPGLTVTKIEN 244

Query: 247 KIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
           KIGLRIVQNGDI++K+VFVPDEDRLPGVNSFQDT+KV
Sbjct: 245 KIGLRIVQNGDIVMKRVFVPDEDRLPGVNSFQDTNKV 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402715756|gb|AFQ93696.1| acyl-CoA oxidase 4 [Prunus persica]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 238/276 (86%), Positives = 258/276 (93%)

Query: 8   HQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVR 67
           +QDDV+KN R++YFN PA+D+S+AFPQATPAS FPPC SDYYQFDDLLT EEQAVR++VR
Sbjct: 6   NQDDVNKNERTNYFNSPAMDVSLAFPQATPASTFPPCTSDYYQFDDLLTPEEQAVRLRVR 65

Query: 68  ECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIAR 127
           +C+EK++APIMAEYWEKAEFPFHVIPK GALR+AGGTIKGYGCPG S+T  A A AEIAR
Sbjct: 66  QCLEKDVAPIMAEYWEKAEFPFHVIPKFGALRIAGGTIKGYGCPGLSITANAFATAEIAR 125

Query: 128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN 187
           VDASCSTF LVHSSLAMLTIALCGSE QKQ+YLPSLA+L T+ACWALTEP YGSDASAL 
Sbjct: 126 VDASCSTFFLVHSSLAMLTIALCGSEAQKQEYLPSLAELKTVACWALTEPDYGSDASALR 185

Query: 188 TTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENK 247
           TTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY+VKK+ PGLT TKIENK
Sbjct: 186 TTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYIVKKNVPGLTATKIENK 245

Query: 248 IGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
           IGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV
Sbjct: 246 IGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 281

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481155|ref|XP_002264086.2| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 1 [Vitis vinifera] gi|296083170|emb|CBI22806.3| unnamed protein product [Vitis vinifera]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/280 (85%), Positives = 258/280 (92%)

Query: 4   HSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVR 63
           +SS + DD +K  + SYF LP+LD+SVAFPQATPAS FPPCASDYYQFDDLLT EEQA+R
Sbjct: 11  YSSNNPDDSEKAKKGSYFGLPSLDVSVAFPQATPASIFPPCASDYYQFDDLLTPEEQALR 70

Query: 64  MKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIA 123
           MKVR+C+EKEIAPIM EYWEKAEFPFHV+PKL ALR+AGGTIKGYGCPG SVT +AI  A
Sbjct: 71  MKVRKCVEKEIAPIMTEYWEKAEFPFHVVPKLAALRIAGGTIKGYGCPGLSVTASAITTA 130

Query: 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA 183
           E++RVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQLNTIACWALTEP YGSDA
Sbjct: 131 EVSRVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLNTIACWALTEPDYGSDA 190

Query: 184 SALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTK 243
           S+L TTATKVEGGWILEGQKRWIGNSTFADVL+IFARNTTTNQINGY+VKK APGLT TK
Sbjct: 191 SSLKTTATKVEGGWILEGQKRWIGNSTFADVLIIFARNTTTNQINGYIVKKGAPGLTATK 250

Query: 244 IENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
           I+NKIGLRIVQNGDI  KKVFVPDEDRLPGVNSFQDT+KV
Sbjct: 251 IQNKIGLRIVQNGDIQFKKVFVPDEDRLPGVNSFQDTNKV 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722526|ref|NP_001236991.1| acyl-CoA oxidase [Glycine max] gi|156972244|gb|ABU98950.1| acyl-CoA oxidase [Glycine max]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 235/283 (83%), Positives = 260/283 (91%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M I+SSK+ D   +NA  SYF  P LD+S AFPQATPAS FPPCASDY+Q D+LLT+EEQ
Sbjct: 1   MAINSSKNPDGSVQNAMPSYFYSPPLDVSAAFPQATPASTFPPCASDYFQLDNLLTAEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKEIAPIM EYWEKA+FPFHVIPKLGALR+AGGTIK YGCPG S+TG+AI
Sbjct: 61  AIRKKVRECMEKEIAPIMTEYWEKAKFPFHVIPKLGALRIAGGTIKDYGCPGLSITGSAI 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A+AE+ARVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQL T+ACWALTEP YG
Sbjct: 121 AVAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLQTVACWALTEPDYG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDASAL TTATKVEGGWILEGQKRWIGNSTFADVLV+FARN +TNQING+++KKDAPGLT
Sbjct: 181 SDASALKTTATKVEGGWILEGQKRWIGNSTFADVLVVFARNASTNQINGFIIKKDAPGLT 240

Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
           VTKIENKIGLRIVQNGDI+++KVFVPDEDR+ GVNSFQDT+KV
Sbjct: 241 VTKIENKIGLRIVQNGDIVMRKVFVPDEDRIAGVNSFQDTNKV 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087764|ref|XP_002308225.1| predicted protein [Populus trichocarpa] gi|222854201|gb|EEE91748.1| predicted protein [Populus trichocarpa]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/277 (82%), Positives = 256/277 (92%), Gaps = 1/277 (0%)

Query: 7   KHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKV 66
           K++D+V++N RSSYFNLP LD+SVAFPQATP S FPP  SDYYQF DLLT E+QA+RM+V
Sbjct: 5   KNKDEVEQNPRSSYFNLPPLDVSVAFPQATPVSTFPPSVSDYYQFSDLLTVEDQALRMRV 64

Query: 67  RECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIA 126
           RECMEKEIAP+M EYWEKA+FPFH IPKLGAL +AGGTIKGYGCPG S+T +AIA+AE+A
Sbjct: 65  RECMEKEIAPMMTEYWEKAKFPFHAIPKLGALGIAGGTIKGYGCPGLSITASAIAMAEVA 124

Query: 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASAL 186
           RVDASCSTFILVHS LAMLTIA CGSEEQK KYLPSLAQ +T+ACWALTEP YGSDAS L
Sbjct: 125 RVDASCSTFILVHS-LAMLTIAFCGSEEQKLKYLPSLAQFSTVACWALTEPDYGSDASGL 183

Query: 187 NTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIEN 246
            TTA KVEGGWILEG+KRWIGNSTFAD+LV+FARNTTTNQING++VKKDAPGLTVTKIEN
Sbjct: 184 KTTAIKVEGGWILEGKKRWIGNSTFADLLVVFARNTTTNQINGFIVKKDAPGLTVTKIEN 243

Query: 247 KIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
           KIGLRIVQNGDI++K+VFVPDEDRLPGVNSFQDT+KV
Sbjct: 244 KIGLRIVQNGDIVMKRVFVPDEDRLPGVNSFQDTNKV 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47118098|gb|AAT11172.1| putative short-chain acyl-CoA oxidase [Tropaeolum majus]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/279 (82%), Positives = 249/279 (89%)

Query: 5   SSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRM 64
           SS  QD+ D   RSSYFNLPALDI  AFPQATPASK PP  SDYY+FDDLLT EEQA+R+
Sbjct: 6   SSTKQDNSDNKDRSSYFNLPALDIYAAFPQATPASKLPPTVSDYYKFDDLLTPEEQALRI 65

Query: 65  KVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAE 124
           KVRECMEKE+APIM EYWEKAEFPFH++PKLGALR+AGGTIKGYGCPG S+TG+AIA AE
Sbjct: 66  KVRECMEKEVAPIMTEYWEKAEFPFHIVPKLGALRIAGGTIKGYGCPGLSITGSAIATAE 125

Query: 125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDAS 184
           +ARVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQL+ +ACWALTEP YGSDAS
Sbjct: 126 VARVDASCSTFILVHSSLAMLTIALCGSESQKQKYLPSLAQLSDVACWALTEPDYGSDAS 185

Query: 185 ALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKI 244
            L T ATKVEGGW+LEGQKRWIG        +IFARNT+TNQING++VKKDAPGLT TKI
Sbjct: 186 GLRTIATKVEGGWLLEGQKRWIGTVPLQISWIIFARNTSTNQINGFIVKKDAPGLTATKI 245

Query: 245 ENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
           +NKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDT+KV
Sbjct: 246 QNKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTNKV 284

Source: Tropaeolum majus

Species: Tropaeolum majus

Genus: Tropaeolum

Family: Tropaeolaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521028|ref|XP_003529160.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like [Glycine max]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 227/265 (85%), Positives = 248/265 (93%)

Query: 19  SYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIM 78
           SYFNLPALD+SVAFPQATPAS FPPCASDY+ F+DLL  EEQAVR KVRECMEKEIAPIM
Sbjct: 3   SYFNLPALDVSVAFPQATPASNFPPCASDYFHFNDLLKPEEQAVRNKVRECMEKEIAPIM 62

Query: 79  AEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILV 138
            EYWEKAEFPFHVIPK  ALR+AGGTIKGYGCPG S+TG+A+A AE+ARVDASCSTF LV
Sbjct: 63  TEYWEKAEFPFHVIPKFAALRIAGGTIKGYGCPGLSITGSAVATAEVARVDASCSTFYLV 122

Query: 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWI 198
           HSSLAMLTIALCGSE QKQKYLPSLAQ+ TIACWALTEP YGSDASAL TTATK++ GWI
Sbjct: 123 HSSLAMLTIALCGSEAQKQKYLPSLAQMKTIACWALTEPDYGSDASALKTTATKLQCGWI 182

Query: 199 LEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDI 258
           L+GQKRWIGNSTFAD+LVIFARNTTTNQINGY+VKKDAPGLTVTK+ENKIGLRIVQNGDI
Sbjct: 183 LDGQKRWIGNSTFADLLVIFARNTTTNQINGYIVKKDAPGLTVTKMENKIGLRIVQNGDI 242

Query: 259 LLKKVFVPDEDRLPGVNSFQDTSKV 283
           +++KVFVPD+DR+ GVNSFQDT+KV
Sbjct: 243 VMRKVFVPDDDRIEGVNSFQDTNKV 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819888|ref|XP_002877827.1| acyl-CoA oxidase 4 [Arabidopsis lyrata subsp. lyrata] gi|297323665|gb|EFH54086.1| acyl-CoA oxidase 4 [Arabidopsis lyrata subsp. lyrata]

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/283 (79%), Positives = 251/283 (88%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           MT+ SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MTVLSSADRASTEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  A+
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAV 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS L TTATKVEGGW ++GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct: 181 SDASGLGTTATKVEGGWKIKGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240

Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
            TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKV
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKV 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2074403	436	ACX4 "acyl-CoA oxidase 4" [Ara	0.972	0.649	0.795	1.3e-121
DICTYBASE|DDB_G0274585	430	DDB_G0274585 "putative acyl-Co	0.817	0.553	0.410	3.4e-45
UNIPROTKB|Q47V61	394	gcdH "Glutaryl-CoA dehydrogena	0.776	0.573	0.402	1.6e-38
TIGR_CMR|CPS_4667	394	CPS_4667 "glutaryl-CoA dehydro	0.776	0.573	0.402	1.6e-38
WB|WBGene00010052	409	F54D5.7 [Caenorhabditis elegan	0.797	0.567	0.361	7e-38
UNIPROTKB|Q4KKG4	393	gcdH "Glutaryl-CoA dehydrogena	0.776	0.575	0.372	1.1e-34
RGD|1308829	447	Gcdh "glutaryl-CoA dehydrogena	0.766	0.498	0.385	2.2e-34
MGI|MGI:104541	438	Gcdh "glutaryl-Coenzyme A dehy	0.828	0.550	0.366	2.8e-34
ZFIN|ZDB-GENE-041010-117	427	gcdhl "glutaryl-Coenzyme A deh	0.762	0.519	0.385	2.8e-34
UNIPROTKB|Q2KHZ9	438	GCDH "Glutaryl-CoA dehydrogena	0.766	0.509	0.380	5.8e-34

TAIR|locus:2074403 ACX4 "acyl-CoA oxidase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
 Identities = 225/283 (79%), Positives = 249/283 (87%)

Query:     1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
             M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct:     1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query:    61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
             A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct:    61 AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120

Query:   121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
             A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct:   121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query:   181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
             SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct:   181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240

Query:   241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
              TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKV
Sbjct:   241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKV 283

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003997 "acyl-CoA oxidase activity" evidence=IMP;IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA;IMP;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0046459 "short-chain fatty acid metabolic process" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0044265 "cellular macromolecule catabolic process" evidence=RCA

DICTYBASE|DDB_G0274585 DDB_G0274585 "putative acyl-CoA oxidase" [Dictyostelium discoideum (taxid:44689)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 101/246 (41%), Positives = 147/246 (59%)

Query:    40 KFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPI-MAEYWEKAEFPFHVIPKLGAL 98
             K  P A+D++ FD LLT +E A+R K  +  ++EI  + + EY+E+AEFP  +I +L  L
Sbjct:    21 KAQPSATDFFDFDGLLTEKELAIRKKAEKFAKEEINSLNINEYYERAEFPLPIIERLKGL 80

Query:    99 RVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQK 158
                G  IKGYG P  +     +   EI++  A  +TF  +  ++ ML I   GSE+QKQ 
Sbjct:    81 NWVGANIKGYGSPELTSMELGLIAMEISKSSADIATFYTILLNITMLAIYYSGSEQQKQY 140

Query:   159 YLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLV 216
             YLP +  L  I  +ALTEP  GSDA+ L  TA ++  G  WIL G+KRWIGN+  AD++V
Sbjct:   141 YLPKMTSLEKIGAFALTEPEAGSDAAGLKCTAKQLPNGAGWILNGEKRWIGNAPMADIIV 200

Query:   217 IFARNTTTNQINGYLVK--KDAPG---LTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
             I+ARN  TN+I+G++++  K A G   L +  ++ K   R VQNG I +K  F+ ++ RL
Sbjct:   201 IWARNIDTNKIHGFILEPSKVASGGDQLRIETLQKKFAFRSVQNGHIFMKDCFIAEDQRL 260

Query:   272 PGVNSF 277
                  F
Sbjct:   261 TNALDF 266

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0005777 "peroxisome" evidence=ISS

GO:0003997 "acyl-CoA oxidase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q47V61 gcdH "Glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 93/231 (40%), Positives = 134/231 (58%)

Query:    47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAP--IMAEYWEKAEFPFHVIPKLGALRVAGGT 104
             D    +D L+ +E+ VR       ++E+ P  +MA   E  +F  +++ + G L + G T
Sbjct:    11 DILLLNDQLSEDERMVRDMAHTFCQEELMPGVLMANRNE--DFDPNIMRQFGELGLLGAT 68

Query:   105 IKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
             I GYGC G +     +   E+ RVD+   + + V SSL M  I   G+ EQK+KYLP LA
Sbjct:    69 IDGYGCSGVNYVSYGLVAREVERVDSGYRSAMSVQSSLVMHPINAYGTTEQKEKYLPKLA 128

Query:   165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
                 I C+ LTEP  GSD S++ T A KV+GG+ L G K WI NS  ADV V++A+N   
Sbjct:   129 TGEYIGCFGLTEPGSGSDPSSMITRAKKVDGGYRLTGSKMWITNSPIADVFVVWAKNEAE 188

Query:   225 -NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV 274
              NQI G++++K   GL+  KIE KI LR    G+I++  VFVP+E+  P +
Sbjct:   189 GNQICGFVLEKGMAGLSAPKIEGKISLRTSITGEIVMDNVFVPEENMFPEI 239

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

TIGR_CMR|CPS_4667 CPS_4667 "glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 93/231 (40%), Positives = 134/231 (58%)

Query:    47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAP--IMAEYWEKAEFPFHVIPKLGALRVAGGT 104
             D    +D L+ +E+ VR       ++E+ P  +MA   E  +F  +++ + G L + G T
Sbjct:    11 DILLLNDQLSEDERMVRDMAHTFCQEELMPGVLMANRNE--DFDPNIMRQFGELGLLGAT 68

Query:   105 IKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
             I GYGC G +     +   E+ RVD+   + + V SSL M  I   G+ EQK+KYLP LA
Sbjct:    69 IDGYGCSGVNYVSYGLVAREVERVDSGYRSAMSVQSSLVMHPINAYGTTEQKEKYLPKLA 128

Query:   165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
                 I C+ LTEP  GSD S++ T A KV+GG+ L G K WI NS  ADV V++A+N   
Sbjct:   129 TGEYIGCFGLTEPGSGSDPSSMITRAKKVDGGYRLTGSKMWITNSPIADVFVVWAKNEAE 188

Query:   225 -NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV 274
              NQI G++++K   GL+  KIE KI LR    G+I++  VFVP+E+  P +
Sbjct:   189 GNQICGFVLEKGMAGLSAPKIEGKISLRTSITGEIVMDNVFVPEENMFPEI 239

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

WB|WBGene00010052 F54D5.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 85/235 (36%), Positives = 134/235 (57%)

Query:    47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
             D +Q  D LT +E+++ +  RE  ++ + P + E +   +F   +IP++G++ + G   +
Sbjct:    24 DAFQLSDQLTEDERSLMLSAREYCQERLLPRVTEAYRTEKFDPSLIPEMGSMGLLGAPYQ 83

Query:   107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
             GYGC G S  G  +   E+ RVD+   + + V +SL +  I   GSE+QKQKY+P LA  
Sbjct:    84 GYGCAGTSTVGYGLIAREVERVDSGYRSTMSVQTSLVIGPIYNYGSEDQKQKYIPDLASG 143

Query:   167 NTIACWALTEPAYGSDASALNTTAT--KVEGGWILEGQKRWIGNSTFADVLVIFARNTT- 223
               I C+ LTEP +GS+   + T AT  +    + L G K WI NS  +DV+V++AR+   
Sbjct:   144 KKIGCFGLTEPNHGSNPGGMETKATWDETTKTYKLNGSKTWISNSPVSDVMVVWARSARH 203

Query:   224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
              N+I G+++++   GLT  KIE K+ LR    G I +  V VP+E+ LP     Q
Sbjct:   204 NNKIKGFILERGMKGLTTPKIEGKLSLRASITGQIAMDDVPVPEENLLPNAEGLQ 258

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q4KKG4 gcdH "Glutaryl-CoA dehydrogenase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 85/228 (37%), Positives = 128/228 (56%)

Query:    52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGC 110
             D  LT EE+ VR    +  + ++AP + E +   +    +  ++G + + G TI + YG 
Sbjct:    16 DQQLTEEERMVRDSAEQFAQDKLAPRVLEAFRHEKTDPAIFREMGEVGLLGATIPEQYGG 75

Query:   111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
              G +     +   E+ RVD+   + + V SSL M+ I   G+E QKQKYLP LA    I 
Sbjct:    76 SGLNYVCYGLIAREVERVDSGYRSMMSVQSSLVMVPINEFGTEAQKQKYLPKLASGEWIG 135

Query:   171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
             C+ LTEP +GSD  A+ T A KV+GG+ L G K WI NS  ADV V++A++     I G+
Sbjct:   136 CFGLTEPNHGSDPGAMITRARKVDGGYSLTGSKMWITNSPIADVFVVWAKDDA-GDIRGF 194

Query:   231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
             +++K   GL+   I  K+GLR    G+I++  VFVP+E+  P V   +
Sbjct:   195 VLEKGWKGLSAPAIHGKVGLRASITGEIVMDNVFVPEENIFPDVRGLK 242

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISS

GO:0009063 "cellular amino acid catabolic process" evidence=ISS

RGD|1308829 Gcdh "glutaryl-CoA dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 88/228 (38%), Positives = 129/228 (56%)

Query:    52 DDLLTSEEQAVRMKVRE-CMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
             ++ LT++E+ +R   R  C E+ ++ I+     +  F   ++ ++G L V G TIKGYGC
Sbjct:    66 EEQLTADEKLIRDTFRNYCQERLMSRILLANRNEV-FHRDIVYEMGELGVLGPTIKGYGC 124

Query:   111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
              G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + 
Sbjct:   125 AGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPRLAKGELLG 184

Query:   171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
             C+ LTEP +GSD  ++ T A        + L G K WI NS  AD+ V++AR    N I 
Sbjct:   185 CFGLTEPNHGSDPGSMETRARHNPSNKSYTLSGTKTWITNSPVADLFVVWAR-CEDNCIR 243

Query:   229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS 276
             G+L++K   GL+  +IE K  LR    G I++  V VP+E+ LP V+S
Sbjct:   244 GFLLEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLPNVSS 291

GO:0000062 "fatty-acyl-CoA binding" evidence=IDA

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0006637 "acyl-CoA metabolic process" evidence=IDA

GO:0019395 "fatty acid oxidation" evidence=IDA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

MGI|MGI:104541 Gcdh "glutaryl-Coenzyme A dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 91/248 (36%), Positives = 133/248 (53%)

Query:    34 QATPASKFPPCAS--DYYQFDDLLTSEEQAVRMKVRE-CMEKEIAPIMAEYWEKAEFPFH 90
             Q  PA    P     D    ++ LT++E+ +R   R  C E+ ++ I+     +  F   
Sbjct:    37 QIRPAKSSRPVFDWKDPLILEEQLTADEKLIRDTFRNYCQERLMSRILLANRNEV-FHRD 95

Query:    91 VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALC 150
             ++ ++G L V G TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   
Sbjct:    96 IVYEMGELGVLGPTIKGYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTY 155

Query:   151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGN 208
             GSEEQ+QKYLP LA+   + C+ LTEP +GSD   + T A        + L G K WI N
Sbjct:   156 GSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTLSGTKTWITN 215

Query:   209 STFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDE 268
             S  AD+ +++AR    N I G++++K   GL+  +IE K  LR    G I++  V VP+E
Sbjct:   216 SPVADLFIVWAR-CEDNCIRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEE 274

Query:   269 DRLPGVNS 276
             + LP V+S
Sbjct:   275 NVLPNVSS 282

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006637 "acyl-CoA metabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0019395 "fatty acid oxidation" evidence=ISO

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-041010-117 gcdhl "glutaryl-Coenzyme A dehydrogenase, like" [Danio rerio (taxid:7955)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 89/231 (38%), Positives = 127/231 (54%)

Query:    47 DYYQFDDLLTSEEQAVRMKVRE-CMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGG 103
             D    + LLT EE  +R   R  C EK +  I+     + E  FH  ++ ++G L V G 
Sbjct:    54 DALDLEGLLTEEEIMIRDSFRTYCQEKLMPRILMA--NRNEI-FHREIVSEMGELGVLGP 110

Query:   104 TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL 163
             TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   G+EEQKQKYLP L
Sbjct:   111 TIKGYGCAGTSYVAYGLIAREVERVDSGYRSVMSVQSSLVMHPINAYGTEEQKQKYLPRL 170

Query:   164 AQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARN 221
             AQ   + C+ LTEP +GSD  ++ T A        + L G K WI NS  AD+ V++A+ 
Sbjct:   171 AQGEILGCFGLTEPNHGSDPGSMETKAKYNSSSHTFTLTGSKTWITNSPVADICVVWAK- 229

Query:   222 TTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP 272
                 ++ G+++++   GL+  KIE K  LR    G I++ +V VP+E+ LP
Sbjct:   230 CEDGKVRGFILERGMKGLSTPKIEGKFSLRASATGMIIMDEVEVPEENLLP 280

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q2KHZ9 GCDH "Glutaryl-CoA dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 86/226 (38%), Positives = 126/226 (55%)

Query:    52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCP 111
             ++ LT++E  +R   R   ++ + P +        F   +I ++G L + G TI+GY C 
Sbjct:    57 EEQLTADEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGMLGPTIQGYSCA 116

Query:   112 GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171
             G S     +   E+ RVD+   + + V SSL M  I   GSEEQKQKYLP LA+   + C
Sbjct:   117 GVSSVAYGLLARELERVDSGYRSAMSVQSSLVMYPIYAYGSEEQKQKYLPRLAKGELLGC 176

Query:   172 WALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
             + LTEP +GSD S + T A        +IL G K WI NS  AD+L+++AR    + I G
Sbjct:   177 FGLTEPNHGSDPSGMETRARHNPSSRSYILSGSKTWITNSPVADLLIVWAR-CEDSCIRG 235

Query:   230 YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN 275
             +L++K   GL+  +IE K  LR    G I++  V VP+E+ LPGV+
Sbjct:   236 FLLEKGMRGLSTPRIEGKFSLRASSTGMIIMDDVEVPEENVLPGVS 281

GO:0006568 "tryptophan metabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96329	ACOX4_ARATH	1, ., 3, ., 3, ., 6	0.7950	0.9725	0.6490	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XVI3692	acyl-CoA oxidase (EC-1.3.3.6) (437 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_II1951	acetyl-CoA C-acyltransferase (EC-2.3.1.16) (457 aa)	•					•	•		0.925
	fgenesh4_pm.C_LG_I000162	SubName- Full=Putative uncharacterized protein; (460 aa)	•					•	•		0.925
	estExt_Genewise1_v1.C_LG_XIV3807	acetyl-CoA C-acetyltransferase (EC-2.3.1.9) (402 aa)	•					•	•		0.918
	grail3.0024004101	acetyl-CoA C-acetyltransferase (EC-2.3.1.9) (412 aa)	•					•	•		0.917
	estExt_Genewise1_v1.C_LG_X3923	hypothetical protein (726 aa)						•	•		0.908
	estExt_fgenesh4_pg.C_LG_XVIII0682	SubName- Full=Putative uncharacterized protein; (727 aa)						•	•		0.907
	estExt_fgenesh4_pg.C_LG_VIII0916	enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)						•			0.903
	grail3.0006050201	enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)						•			0.903
	gw1.X.5990.1	long-chain acyl-CoA synthetase (EC-6.2.1.3) (705 aa)						•			0.899
	gw1.II.706.1	long-chain-fatty-acid-CoA ligase (EC-6.2.1.3) (652 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
PLN02526	412	PLN02526, PLN02526, acyl-coenzyme A oxidase	0.0
cd01151	386	cd01151, GCD, Glutaryl-CoA dehydrogenase	1e-125
cd01158	373	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog	9e-58
COG1960	393	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta	6e-52
cd00567	327	cd00567, ACAD, Acyl-CoA dehydrogenase	3e-40
cd01156	376	cd01156, IVD, Isovaleryl-CoA dehydrogenase	1e-37
pfam02771	113	pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase,	1e-34
cd01162	375	cd01162, IBD, Isobutyryl-CoA dehydrogenase	2e-32
cd01160	372	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	2e-31
cd01161	409	cd01161, VLCAD, Very long chain acyl-CoA dehydroge	2e-30
cd01157	378	cd01157, MCAD, Medium chain acyl-CoA dehydrogenase	8e-26
PLN02519	404	PLN02519, PLN02519, isovaleryl-CoA dehydrogenase	2e-24
PTZ00461	410	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;	2e-22
cd01152	380	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd	8e-20
pfam02770	52	pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase,	3e-17
PRK12341	381	PRK12341, PRK12341, putative acyl-CoA dehydrogenas	5e-17
TIGR03207	372	TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co	4e-15
cd01153	407	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena	3e-14
cd01150	610	cd01150, AXO, Peroxisomal acyl-CoA oxidase	8e-14
PRK03354	380	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen	7e-13
TIGR03204	395	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase,	1e-12
PRK13026	774	PRK13026, PRK13026, acyl-CoA dehydrogenase; Review	2e-09
PRK09463	777	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	3e-09
PLN02443	664	PLN02443, PLN02443, acyl-coenzyme A oxidase	2e-08
cd01163	377	cd01163, DszC, Dibenzothiophene (DBT) desulfurizat	2e-08
cd01155	394	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil	9e-08
PLN02636	686	PLN02636, PLN02636, acyl-coenzyme A oxidase	1e-07
TIGR03203	378	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase,	1e-07
TIGR04022	391	TIGR04022, sulfur_SfnB, sulfur acquisition oxidore	9e-07
PTZ00456	622	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis	9e-07
PTZ00460	646	PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis	1e-06
PTZ00457	520	PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis	5e-06
cd01154	418	cd01154, AidB, Proteins involved in DNA damage res	3e-05
PLN02312	680	PLN02312, PLN02312, acyl-CoA oxidase	7e-05

>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase

 Score =  547 bits (1410), Expect = 0.0
 Identities = 222/257 (86%), Positives = 240/257 (93%)

Query: 27  DISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAE 86
           D+SVAFPQATPAS FPP  SDYYQFDDLLT EEQA+R +VRECMEKE+APIM EYWEKAE
Sbjct: 1   DVSVAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAE 60

Query: 87  FPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLT 146
           FPFH+IPKLG+L +AGGTIKGYGCPG S+T +AIA AE+ARVDASCSTFILVHSSLAMLT
Sbjct: 61  FPFHIIPKLGSLGIAGGTIKGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLT 120

Query: 147 IALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI 206
           IALCGSE QKQKYLPSLAQL+T+ACWALTEP YGSDAS+LNTTATKVEGGWIL GQKRWI
Sbjct: 121 IALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWI 180

Query: 207 GNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
           GNSTFADVLVIFARNTTTNQING++VKK APGL  TKIENKIGLR+VQNGDI+LK VFVP
Sbjct: 181 GNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVP 240

Query: 267 DEDRLPGVNSFQDTSKV 283
           DEDRLPGVNSFQDT+KV
Sbjct: 241 DEDRLPGVNSFQDTNKV 257

Length = 412

>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase

 Score =  362 bits (930), Expect = e-125
 Identities = 104/241 (43%), Positives = 142/241 (58%)

Query: 43  PCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAG 102
               D    DDLLT EE+A+R   RE  ++E+AP + E + + +F   +I ++G L + G
Sbjct: 1   FNWEDPLNLDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLG 60

Query: 103 GTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPS 162
            TIKGYGC G S     +   E+ RVD+   +F+ V SSL ML I   GSEEQKQKYLP 
Sbjct: 61  ATIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPK 120

Query: 163 LAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 222
           LA    I C+ LTEP +GSD   + T A K  GG+ L G K WI NS  ADV V++ARN 
Sbjct: 121 LASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWARND 180

Query: 223 TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK 282
            T +I G+++++   GL+  KI+ K  LR    G+I++  VFVP+E+ LPG    +   K
Sbjct: 181 ETGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFK 240

Query: 283 V 283
            
Sbjct: 241 C 241

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

 Score =  189 bits (481), Expect = 9e-58
 Identities = 94/219 (42%), Positives = 129/219 (58%), Gaps = 4/219 (1%)

Query: 57  SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSV 115
            E Q +R  VR+  EKEIAP+ AE  EK EFP  VI ++  L + G  I + YG  G   
Sbjct: 1   EEHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDF 60

Query: 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175
              AIAI E+A+VDAS +  + VH+SL    I   G+EEQK+KYLP LA    I  +AL+
Sbjct: 61  LAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALS 120

Query: 176 EPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ---INGYLV 232
           EP  GSDA+AL TTA K    ++L G K WI N   AD  ++FA    +     I  ++V
Sbjct: 121 EPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDPSKGYRGITAFIV 180

Query: 233 KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           ++D PGL+V K E+K+G+R     +++ + V VP E+ L
Sbjct: 181 ERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENIL 219

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373

>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]

 Score =  174 bits (443), Expect = 6e-52
 Identities = 90/237 (37%), Positives = 125/237 (52%), Gaps = 13/237 (5%)

Query: 52  DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA---EFPFHVIPKLGALRVAGGTI-KG 107
           D  L+ E++A+R +VRE  E+E+AP  AE   +     FP  ++  L    + G TI + 
Sbjct: 2   DFDLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEE 61

Query: 108 YGCPGHSVTGAAIAIAEIARVDAS-CSTFILVHSSLAML--TIALCGSEEQKQKYLPSLA 164
           YG  G S    A  + E+AR DA       L H  L  L  TI   G+EEQK++YLP LA
Sbjct: 62  YGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLA 121

Query: 165 QLNTIACWALTEPAYGSDASALNTT-ATKVEGGWILEGQKRWIGNSTFADVLVIFARNT- 222
               I  +ALTEP  GSD ++L TT A + +G ++L GQK WI N+  AD L++ AR   
Sbjct: 122 SGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLARTDP 181

Query: 223 ---TTNQINGYLV-KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN 275
                  I+ +LV K   PG++V  I  K+GLR    G++    V VP E+ L    
Sbjct: 182 APGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEG 238

Length = 393

>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase

 Score =  142 bits (360), Expect = 3e-40
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 47/222 (21%)

Query: 58  EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTG 117
           E++ +R   RE   +E+ P   E  E  E P+ ++ +LG L                   
Sbjct: 2   EQRELRDSAREFAAEELEPYARERRETPEEPWELLAELGLL------------------- 42

Query: 118 AAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP 177
                                   L    +   G+EEQK++YLP LA    IA +ALTEP
Sbjct: 43  ------------------------LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEP 78

Query: 178 AYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR----NTTTNQINGYLVK 233
             GSD + + TTA K   G++L G+K +I N   AD+ ++ AR          I+ +LV 
Sbjct: 79  GAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTDEEGPGHRGISAFLVP 138

Query: 234 KDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN 275
            D PG+TV +I +K+G+R    G+++   V VP+++ L    
Sbjct: 139 ADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEG 180

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC). Length = 327

>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase

 Score =  136 bits (345), Expect = 1e-37
 Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 4/226 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L  E + +R  VRE  +KEIAP+ A+     EFP  +  K+G L + G T  + YG  G 
Sbjct: 2   LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGM 61

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                 I + EI+R   S +     HS+L +  I   GS  QK+KYLP L     I   A
Sbjct: 62  GYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALA 121

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY--- 230
           ++EP  GSD  ++   A K    ++L G K WI N   AD LV++A+   +   +G    
Sbjct: 122 MSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTDPSAGAHGITAF 181

Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS 276
           +V+K  PG +  +  +K+G+R     +++ +   VP+E+ L G N 
Sbjct: 182 IVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENK 227

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376

>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain

 Score =  121 bits (305), Expect = 1e-34
 Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 1/110 (0%)

Query: 56  TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHS 114
           T E++A+R  VRE  E+E+AP  AE+ E+ EFP  +  KLG L + G TI + YG  G  
Sbjct: 1   TEEQEALRDTVREFAEEEVAPHAAEWDEEGEFPRELWRKLGELGLLGLTIPEEYGGAGLD 60

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
               A+   E+AR DAS    + VHSSL    I   G+EEQK+KYLP LA
Sbjct: 61  YLEYALVAEELARADASVGLALSVHSSLVAPPILRFGTEEQKEKYLPKLA 110

The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain. Length = 113

>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase

 Score =  122 bits (309), Expect = 2e-32
 Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKG-YGCPGH 113
           L  E++A++   R    KE+AP  A++ +K  FP  V+ K   L   G  I+   G  G 
Sbjct: 1   LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGL 60

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S   A+I    ++    S + +I +H+  A + I   G++EQ++++LP L  +  +A + 
Sbjct: 61  SRLDASIIFEALSTGCVSTAAYISIHNMCAWM-IDSFGNDEQRERFLPDLCTMEKLASYC 119

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ--INGYL 231
           LTEP  GSDA+AL T A +    ++L G K +I  +  +DV V+ AR        I+ ++
Sbjct: 120 LTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMARTGGEGPKGISCFV 179

Query: 232 VKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           V+K  PGL+    E K+G        ++ +   VP E+RL
Sbjct: 180 VEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRL 219

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375

>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase

 Score =  119 bits (301), Expect = 2e-31
 Identities = 73/224 (32%), Positives = 104/224 (46%), Gaps = 8/224 (3%)

Query: 58  EEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAG-GTIKGYGCPGHSV 115
           E  A R  VR    KE+AP   E WEKA E P  V  K G   + G G  + YG  G  +
Sbjct: 2   EHDAFRDVVRRFFAKEVAPFHHE-WEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDL 60

Query: 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175
             AA+   E+AR   S      +H+ +    I   GS EQK++ LP +     I   A+T
Sbjct: 61  LSAAVLWEELARAGGSGPGL-SLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMT 119

Query: 176 EPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN----TTTNQINGYL 231
           EP  GSD   + TTA K    ++L G K +I N   ADV+++ AR          I+ +L
Sbjct: 120 EPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVARTGGEARGAGGISLFL 179

Query: 232 VKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN 275
           V++  PG +  +   K+G +     ++      VP E+ L   N
Sbjct: 180 VERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEEN 223

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372

>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase

 Score =  117 bits (296), Expect = 2e-30
 Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 13/227 (5%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T E   +   V +  E+   P   +  EK   P   + +L  L + G  + + YG  G 
Sbjct: 27  QTEELNMLVGPVEKFFEEVNDPAKNDQLEK--IPRKTLTQLKELGLFGLQVPEEYGGLGL 84

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           + T  A  +AEI  +D   S  +  H S+    I L G+E QK+KYLP LA    IA +A
Sbjct: 85  NNTQYAR-LAEIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFA 143

Query: 174 LTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFAR-------NTTT 224
           LTEP+ GSDA+++ TTA   E G  ++L G K WI N   AD+  +FA+        +  
Sbjct: 144 LTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGSVK 203

Query: 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           ++I  ++V++   G+T    E K+G++     ++  + V +P E+ L
Sbjct: 204 DKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVL 250

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409

>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase

 Score =  104 bits (261), Expect = 8e-26
 Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 8/226 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT +++  +   R+   +EI P+ AEY +  E+P+ +I +   L +    I +  G  G 
Sbjct: 1   LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGL 60

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                 +   E+A       T I   +SL  + + + G++EQK+KYL  + +   +  + 
Sbjct: 61  GTFDTCLITEELAYGCTGVQTAIEA-NSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYC 119

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------TTNQI 227
           +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR+        +   
Sbjct: 120 VTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKCPASKAF 179

Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
            G++V+ D PG+   + E  +G R      I  + V VP E+ L G
Sbjct: 180 TGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIG 225

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378

>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase

 Score =  101 bits (252), Expect = 2e-24
 Identities = 65/248 (26%), Positives = 114/248 (45%), Gaps = 8/248 (3%)

Query: 35  ATPASKFPPCASDYYQFDDLLTSEEQAVRMK--VRECMEKEIAPIMAEYWEKAEFPFHV- 91
           +   ++    A  +      L  ++  ++ K  V++  ++ IAP  A       FP  V 
Sbjct: 4   SAAKARRRGLARRFSSSSSSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVN 63

Query: 92  -IPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL 149
               +G   + G T  + YG  G       IA+ EI+R   S       HS+L +  +  
Sbjct: 64  LWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVR 123

Query: 150 CGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209
            G+  QK+KYLP L     +   A++EP  GSD  ++   A +V+GG++L G K W  N 
Sbjct: 124 NGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNG 183

Query: 210 TFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
             A  LV++A+         I  ++++K  PG +  +  +K+G+R     +++ +  FVP
Sbjct: 184 PVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP 243

Query: 267 DEDRLPGV 274
           +E+ L   
Sbjct: 244 EENVLGQE 251

Length = 404

>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional

 Score = 95.8 bits (238), Expect = 2e-22
 Identities = 64/235 (27%), Positives = 100/235 (42%), Gaps = 6/235 (2%)

Query: 41  FPPCASDYYQFDDLL--TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGAL 98
                S    F DL   T E  A+R  V +   + +     E      F   +  +LG L
Sbjct: 21  AATMTSASRAFMDLYNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDL 80

Query: 99  RVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQ 157
            V G T+ +  G  G     A I   E+++ D       L HS L +       S  Q+ 
Sbjct: 81  GVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRA 140

Query: 158 KYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLV 216
           ++LP +     +    ++EP  G+D   + TTA K   G ++L G K WI N T ADV +
Sbjct: 141 RWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFL 200

Query: 217 IFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           I+A+     +I  ++V++   G T     +K G+R      +  + V VP E+ L
Sbjct: 201 IYAK--VDGKITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLL 253

Length = 410

>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

 Score = 87.8 bits (218), Expect = 8e-20
 Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 13/230 (5%)

Query: 57  SEEQAVRMKVRECMEKEIAP-IMAEYWEKAEFPFHVIPKLGALRVAGGTI-----KGYGC 110
             E+A R +VR  +   + P +  E             +      A G       K YG 
Sbjct: 1   PSEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGG 60

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S+    I   E+A   A    F  +   LA  TI   G++EQK+++LP +     I 
Sbjct: 61  RGASLMEQLIFREEMAAAGAPVP-FNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIW 119

Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD-VLVIFARNTTTNQING 229
           C   +EP  GSD + L T A +    W++ GQK W   + +AD   ++   +    +  G
Sbjct: 120 CQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWLLVRTDPEAPKHRG 179

Query: 230 ---YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS 276
               LV  D+PG+TV  I +  G     N ++ L  V VPD +R+  VN 
Sbjct: 180 ISILLVDMDSPGVTVRPIRSING-GEFFN-EVFLDDVRVPDANRVGEVND 227

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 380

>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain

 Score = 73.7 bits (182), Expect = 3e-17
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
            +ALTEP  GSD ++L TTA +   GW+L G+K WI N+  AD+ ++ AR
Sbjct: 1   AFALTEPGAGSDLASLETTAERDGDGWVLNGRKWWITNAALADLALVLAR 50

Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold. Length = 52

>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional

 Score = 79.8 bits (197), Expect = 5e-17
 Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 17/226 (7%)

Query: 55  LTSEEQAVRMKVRECMEKEIA-PIMAEYWEKAEFPFHVIPKLGALRVAG----GTIKGYG 109
           LT E++ +   +RE + +           E   +P   +    AL   G    G  + +G
Sbjct: 5   LTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMR---ALADNGISMLGVPEEFG 61

Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
                     + + E+++     +   L+ +   + ++   GS EQ +K   S  +    
Sbjct: 62  GTPADYVTQMLVLEEVSK---CGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDP 118

Query: 170 A-CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT----TT 224
           A   ALTEP  GSD ++  TT T+  G   L GQK +I  +     +++ AR+       
Sbjct: 119 AYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARDPQPKDPK 178

Query: 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 270
                + V    PG+ +  +  KIG  ++   ++ L  V V + D 
Sbjct: 179 KAFTLWWVDSSKPGIKINPLH-KIGWHMLSTCEVYLDNVEVEESDL 223

Length = 381

>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase

 Score = 74.6 bits (183), Expect = 4e-15
 Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L  + QA+    R    + IAP   E  +       ++  +G +   G  + + +G  G 
Sbjct: 1   LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGM 60

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
               A +   +IAR D S S ++ + +SL    +A     E  + +L  L     +   A
Sbjct: 61  GCLAAGVIHEQIARADLSMS-YVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIA 119

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ----ING 229
           LTEP  GSDA+ L   A +    ++L G+K  I  +  AD  V+FAR  +  +    I+ 
Sbjct: 120 LTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFARTGSEAEGARGISA 179

Query: 230 YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +LV  D PG+T  + +   G R +  G I  + V VP +  L
Sbjct: 180 FLVPMDLPGITRNRFDC-HGQRAIGRGSIFFENVRVPADHML 220

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372

>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 17/148 (11%)

Query: 119 AIAIAEI-ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP 177
             A+AEI +R DA            A  T+   G+E Q++K++P LA+        LTEP
Sbjct: 69  YSALAEIFSRGDAPLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEP 126

Query: 178 AYGSDASALNTTATKVEGG-WILEGQKRWI--GNSTFAD--VLVIFAR----NTTTNQIN 228
             GSD  AL T A     G W + G KR+I  G    ++  V ++ AR          ++
Sbjct: 127 DAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLARSEGAPPGVKGLS 186

Query: 229 GYLVKK-----DAPGLTVTKIENKIGLR 251
            +LV K     +  G+TV +IE K+GL 
Sbjct: 187 LFLVPKFLDDGERNGVTVARIEEKMGLH 214

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 407

>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase

 Score = 71.2 bits (175), Expect = 8e-14
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 27/177 (15%)

Query: 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASAL 186
             D S    + +H  L    I   G++E +  +L     L  I C+A TE  +GS+   L
Sbjct: 93  GYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGL 152

Query: 187 NTTAT--KVEGGWI-----LEGQKRWIGN----STFADVLVIFARNTTTNQ---INGYLV 232
            TTAT   +   ++         K W GN    +T A   V+FA+  T  +   ++ ++V
Sbjct: 153 ETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHA---VVFAQLITPGKNHGLHAFIV 209

Query: 233 K-KDA------PGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK 282
             +D       PG+TV  I  K+GL  V NG +  + V +P E+ L   N F D S 
Sbjct: 210 PIRDPKTHQPLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRENLL---NRFGDVSP 263

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment. Length = 610

>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated

 Score = 67.9 bits (166), Expect = 7e-13
 Identities = 62/227 (27%), Positives = 98/227 (43%), Gaps = 22/227 (9%)

Query: 55  LTSEEQAVRMKVRECMEKE-IAPIMAEYWEKAEFPFHVIPKLGALRV--------AGGTI 105
           L  E++     +RE M  E      AE    + +P   +  L  + +         GG  
Sbjct: 5   LNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLD 64

Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
            G+      VT AA+   E+ R+ A   T++L        T    G++EQ  K +     
Sbjct: 65  AGF------VTLAAV-WMELGRLGAP--TYVLYQLPGGFNTFLREGTQEQIDKIMAFRGT 115

Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTN 225
              +   A+TEP  GSD  +L TT T+  G   L G K +I +S +   +V+ AR+  + 
Sbjct: 116 GKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMARDGASP 175

Query: 226 QINGY---LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDED 269
               Y    V    PG+ VTK+E K+GLR+    +I    V + ++D
Sbjct: 176 DKPVYTEWFVDMSKPGIKVTKLE-KLGLRMDSCCEITFDDVELDEKD 221

Length = 380

>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit

 Score = 67.0 bits (163), Expect = 1e-12
 Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 6/139 (4%)

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210
           G+EEQK+++LP +A ++   C   +EP  GSD ++L T A K    WI+ GQK W   + 
Sbjct: 104 GNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQ 163

Query: 211 FADVLVIFARNTTTNQ----INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
            AD +    R   T +    I+  LV   + G+TV  I+   G   V+  ++    V VP
Sbjct: 164 HADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDGG--VEVNEVFFDDVEVP 221

Query: 267 DEDRLPGVNSFQDTSKVRL 285
            E+ +   N   D +K  L
Sbjct: 222 YENLVGEENKGWDYAKFLL 240

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 395

>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 18/133 (13%)

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT----KVEG----GWILEGQ 202
           G++EQK  +LP LA    I C+ALT P  GSDA A+  T      + EG    G  L   
Sbjct: 175 GTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWD 234

Query: 203 KRWIGNSTFADVLVIFAR---------NTTTNQINGYLVKKDAPGLTVTKIENKIGLRIV 253
           KR+I  +  A VL +  +         +     I   L+  D PG+ + +  N +G+   
Sbjct: 235 KRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAF- 293

Query: 254 QNGDILLKKVFVP 266
            NG    K VF+P
Sbjct: 294 MNGTTRGKDVFIP 306

Length = 774

>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 45/142 (31%), Positives = 62/142 (43%), Gaps = 36/142 (25%)

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQ-------- 202
           G++EQK  YLP LA+   I C+ALT P  GSDA ++  T    +G W  +G+        
Sbjct: 176 GTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEW--QGEEVLGMRLT 233

Query: 203 --KRWIGNSTFADV-----LVIFARNTTTNQINGYLVKKDAPGLTVTKIEN-----KIGL 250
             KR+I   T A +     L     +      +G L  K+  G+T   I       +IG 
Sbjct: 234 WNKRYI---TLAPIATVLGLAFKLYDP-----DGLLGDKEDLGITCALIPTDTPGVEIGR 285

Query: 251 R------IVQNGDILLKKVFVP 266
           R        QNG    K VF+P
Sbjct: 286 RHFPLNVPFQNGPTRGKDVFIP 307

Length = 777

>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 27/162 (16%)

Query: 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT-- 191
            +  +H  + +  I   G+EEQ++K+LP   ++  I C+A TE  +GS+   L TTAT  
Sbjct: 97  GYTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFD 156

Query: 192 -KVEGGWI----LEGQKRWIGN----STFADVLVIFARNTTTNQ---INGYLVK------ 233
            K +   I    L   K W G     ST A   V++AR  T  +   I+G++V+      
Sbjct: 157 PKTDEFVIHSPTLTSSKWWPGGLGKVSTHA---VVYARLITNGKDHGIHGFIVQLRSLDD 213

Query: 234 -KDAPGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRL 271
               PG+TV  I  K G      + NG +    V +P +  L
Sbjct: 214 HSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQML 255

Length = 664

>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 32/197 (16%)

Query: 94  KLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAML-------- 145
            LG LRV     K YG  G S+      + E+A  D          S++A          
Sbjct: 35  GLGTLRVP----KEYGGLGASLPDLYEVVRELAAAD----------SNIAQALRAHFGFV 80

Query: 146 -TIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE---GGWILEG 201
             + L G E+ ++++   +     I   A++E      +    T  T      GG++L G
Sbjct: 81  EALLLAGPEQFRKRWFGRVLN-GWIFGNAVSE----RGSVRPGTFLTATVRDGGGYVLNG 135

Query: 202 QKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLK 261
           +K +   + F+D + + A +     +    V  D PG+TV    +  G R+  +G +   
Sbjct: 136 KKFYSTGALFSDWVTVSALDEEGKLVFA-AVPTDRPGITVVDDWDGFGQRLTASGTVTFD 194

Query: 262 KVFVPDEDRLPGVNSFQ 278
            V V  ++ LP  N+  
Sbjct: 195 NVRVEPDEVLPRPNAPD 211

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup. Length = 377

>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 144 MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG-SDASALNTTATKVEGGWILEGQ 202
           M  +   GSEEQK+++L  L      + +A+TEP    SDA+ +  +  +    +++ G+
Sbjct: 101 MEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGR 160

Query: 203 KRWIGNSTFAD--VLVIFARNTTTN-----QINGYLVKKDAPGLTV 241
           K W   +      + ++  R          Q +  LV  D PG+T+
Sbjct: 161 KWWSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTI 206

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 394

>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 34/190 (17%)

Query: 121 AIAE-IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAY 179
           AI E +  VD S    + V  SL   ++   G+++ + KY   +  L+   C+A+TE  +
Sbjct: 125 AITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHH 184

Query: 180 GSDASALNTTAT--KVEGGWIL----EGQ-KRWIGNST----FADVLVIFAR-------- 220
           GS+   L TTAT   +   +++    +G  K WIGN+     FA V   FAR        
Sbjct: 185 GSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATV---FARLKLPTHDS 241

Query: 221 -NTTTNQINGYLVK----KD---APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP 272
              +   ++ ++V     K     PG+ +    +K+GL  V NG +  + V +P ++ L 
Sbjct: 242 KGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLL- 300

Query: 273 GVNSFQDTSK 282
             N F D S+
Sbjct: 301 --NRFGDVSR 308

Length = 686

>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 14/146 (9%)

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210
           GS  QK  +LP +   +    +A  E     D   ++TTA K   GW+++G+K  + N  
Sbjct: 101 GSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGE 160

Query: 211 FADVLVIFARNTTTNQ----INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFV- 265
            AD L++ AR     +    I  +LV   A G+T+     + GL      DI    V V 
Sbjct: 161 TADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVG 217

Query: 266 ------PDEDRLPGVNSFQDTSKVRL 285
                   E+ LP +    D ++  L
Sbjct: 218 ADAAIGDPENALPLIERVVDDARAAL 243

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 378

>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 48/173 (27%), Positives = 72/173 (41%), Gaps = 6/173 (3%)

Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAML-TIALCGSEEQKQKYLPSLA 164
           + YG  G S    A  IA I+  D S       H     L  + L GSEEQK+ +   + 
Sbjct: 54  RAYGGAGVSYATLAEVIAIISAADPSLGQIPQNH--FYALEVLRLTGSEEQKRFFFGEVL 111

Query: 165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
                   A +E     +     T   +   G+ L G+K +   + FA  + + A +   
Sbjct: 112 AGERFGN-AFSE-RGTRNVLDFQTRLRRDGDGYRLNGRKFYSTGALFAHWIPVLALDDDG 169

Query: 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
             +  + V +DAPGLTV    +  G R   +G +LL  V VP E  +P   +F
Sbjct: 170 RPVLAF-VPRDAPGLTVIDDWSGFGQRTTASGTVLLDDVRVPAEHVVPIQRAF 221

Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family [Central intermediary metabolism, Sulfur metabolism]. Length = 391

>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 143 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEG 201
           A  T+   GSEEQK++YL  L          LTEP  G+D   + T A    +G + + G
Sbjct: 156 AANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITG 215

Query: 202 QKRWI--GNSTFAD--VLVIFAR----NTTTNQINGYLVKKDAP 237
            K +I  G+    +  V ++ AR      TT  ++ +LV +   
Sbjct: 216 TKIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVV 259

Length = 622

>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 18/137 (13%)

Query: 138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT--KVEG 195
           VH ++ +    + G++EQ   ++PSL     + C+A TE  +GSD   L TTAT  K   
Sbjct: 97  VHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTN 156

Query: 196 GWIL-----EGQKRWIGNSTF-ADVLVIFARNTTTN----------QINGYLVKKDAPGL 239
            +++     E  K W G   F  +  +++A+               +I      K   G+
Sbjct: 157 EFVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGV 216

Query: 240 TVTKIENKIGLRIVQNG 256
            V  I  K+G  +  NG
Sbjct: 217 EVGDIGPKMGYAVKDNG 233

Length = 646

>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 11/144 (7%)

Query: 108 YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167
           YG  G   T  A+   E+     S     + HS      ++  GS+E K KYL +++   
Sbjct: 74  YGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGT 133

Query: 168 TIACWALTEPAYGSDASALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ 226
            +  WA TE   GSD S   T A+   +G ++L GQKR    ++    LV+    T T  
Sbjct: 134 IMMGWA-TEEGCGSDISMNTTKASLTDDGSYVLTGQKRCEFAASATHFLVLAKTLTQTAA 192

Query: 227 ING---------YLVKKDAPGLTV 241
             G         ++  KDA G++V
Sbjct: 193 EEGATEVSRNSFFICAKDAKGVSV 216

Length = 520

>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 16/125 (12%)

Query: 151 GSEEQKQKYLPSLAQ----LNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQKRW 205
           G EE KQ     L+           W +TE   GSD  A  TTA +  GG + L G K W
Sbjct: 127 GPEELKQYLPGLLSDRYKTGLLGGTW-MTEKQGGSDLGANETTAERSGGGVYRLNGHK-W 184

Query: 206 IGNSTFADVLVIFAR----NTTTNQINGYLVKKDAP-----GLTVTKIENKIGLRIVQNG 256
             ++  AD  ++ AR          ++ +LV +        G  + ++++K+G R V  G
Sbjct: 185 FASAPLADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATG 244

Query: 257 DILLK 261
           ++   
Sbjct: 245 EVEFD 249

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates. Length = 418

>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 20/174 (11%)

Query: 125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDAS 184
           I   D S +  + VH  L    I   G++    K+L          C+A+TE  +GS+  
Sbjct: 142 IGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVR 201

Query: 185 ALNTTAT--KVEGGWILE-----GQKRWIGNST-FADVLVIFAR---NTTTNQINGYLVK 233
            + T  T       +++       QK WIG +   A   ++F++   N     ++ ++ +
Sbjct: 202 GIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHAFIAQ 261

Query: 234 -KDA-----PGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTS 281
            +D      P + +    +KIGL  V NG I    + +P E+ L   NS  D S
Sbjct: 262 IRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLL---NSVADVS 312

Length = 680

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
KOG0139	398	consensus Short-chain acyl-CoA dehydrogenase [Lipi	100.0
KOG0141	421	consensus Isovaleryl-CoA dehydrogenase [Amino acid	100.0
KOG0138	432	consensus Glutaryl-CoA dehydrogenase [Amino acid t	100.0
KOG0140	408	consensus Medium-chain acyl-CoA dehydrogenase [Lip	100.0
PLN02526	412	acyl-coenzyme A oxidase	100.0
PRK09463	777	fadE acyl-CoA dehydrogenase; Reviewed	100.0
cd01151	386	GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd	100.0
PRK13026	774	acyl-CoA dehydrogenase; Reviewed	100.0
PLN02519	404	isovaleryl-CoA dehydrogenase	100.0
PRK03354	380	crotonobetainyl-CoA dehydrogenase; Validated	100.0
PRK12341	381	putative acyl-CoA dehydrogenase; Provisional	100.0
cd01161	409	VLCAD Very long chain acyl-CoA dehydrogenase. VLCA	100.0
cd01156	376	IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d	100.0
cd01157	378	MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar	100.0
TIGR03203	378	pimD_small pimeloyl-CoA dehydrogenase, small subun	100.0
PTZ00461	410	isovaleryl-CoA dehydrogenase; Provisional	100.0
cd01162	375	IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d	100.0
TIGR03207	372	cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen	100.0
cd01160	372	LCAD Long chain acyl-CoA dehydrogenase. LCAD is an	100.0
TIGR03204	395	pimC_large pimeloyl-CoA dehydrogenase, large subun	100.0
cd01158	373	SCAD_SBCAD Short chain acyl-CoA dehydrogenases and	100.0
KOG0137	634	consensus Very-long-chain acyl-CoA dehydrogenase [	100.0
cd01155	394	ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE	100.0
COG1960	393	CaiA Acyl-CoA dehydrogenases [Lipid metabolism]	100.0
PTZ00456	622	acyl-CoA dehydrogenase; Provisional	100.0
cd01152	380	ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases	100.0
cd01153	407	ACAD_fadE5 Putative acyl-CoA dehydrogenases simila	100.0
PLN02876	822	acyl-CoA dehydrogenase	100.0
PLN02636	686	acyl-coenzyme A oxidase	100.0
cd01163	377	DszC Dibenzothiophene (DBT) desulfurization enzyme	100.0
PTZ00457	520	acyl-CoA dehydrogenase; Provisional	100.0
PLN02312	680	acyl-CoA oxidase	100.0
cd01154	418	AidB Proteins involved in DNA damage response, sim	100.0
KOG1469	392	consensus Predicted acyl-CoA dehydrogenase [Genera	99.97
cd01159	370	NcnH Naphthocyclinone hydroxylase. Naphthocyclinon	99.97
cd00567	327	ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac	99.97
PRK11561	538	isovaleryl CoA dehydrogenase; Provisional	99.96
cd01150	610	AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl	99.96
PTZ00460	646	acyl-CoA dehydrogenase; Provisional	99.95
PLN02443	664	acyl-coenzyme A oxidase	99.93
PF02771	113	Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal	99.84
KOG0135	661	consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t	99.79
PF02770	52	Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma	99.66
TIGR02309	477	HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy	99.57
KOG0136	670	consensus Acyl-CoA oxidase [Lipid transport and me	99.55
PF11794	264	HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter	98.67
COG2368	493	Aromatic ring hydroxylase [Secondary metabolites b	98.31
TIGR02310	519	HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy	98.3
PF14749	125	Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal;	91.4

>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-53  Score=369.34  Aligned_cols=236  Identities=34%  Similarity=0.501  Sum_probs=226.1

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcc
Q 022844           54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC  132 (291)
Q Consensus        54 ~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~  132 (291)
                      .|+|.+.++.+.+++|+++.+.|.+++.|++..+|+.+++.+.++|++|+ +|++|||.|.++..++.++||+++.|+++
T Consensus        36 ~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv  115 (398)
T KOG0139|consen   36 ILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASV  115 (398)
T ss_pred             hcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccc
Confidence            38899999999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             hhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCC
Q 022844          133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFA  212 (291)
Q Consensus       133 ~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a  212 (291)
                      ++++.+|+.+...+|..|||++||++|+|.+ .|+.+++||++||++|||+..+.|+|++++|.|+|||+|+||||+..|
T Consensus       116 ~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A  194 (398)
T KOG0139|consen  116 GVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEA  194 (398)
T ss_pred             eeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCccc
Confidence            9999999999999999999999999888876 577899999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhc
Q 022844          213 DVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCS  288 (291)
Q Consensus       213 ~~~lv~a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r  288 (291)
                      ++++|+|.++.   .+|+++|+||+++||+++...++++|+|++.+|.|.|+||+||.+++||+ +.||++.+..||.+|
T Consensus       195 ~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gR  274 (398)
T KOG0139|consen  195 DWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGR  274 (398)
T ss_pred             ceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccc
Confidence            99999999863   47899999999999999999999999999999999999999999999999 569999999999999


Q ss_pred             cC
Q 022844          289 KF  290 (291)
Q Consensus       289 ~~  290 (291)
                      .-
T Consensus       275 Ig  276 (398)
T KOG0139|consen  275 IG  276 (398)
T ss_pred             ee
Confidence            63

>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]

Probab=100.00  E-value=2.6e-53  Score=361.80  Aligned_cols=239  Identities=29%  Similarity=0.423  Sum_probs=228.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCC--ChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEF--PFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (291)
Q Consensus        53 ~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~--p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~  129 (291)
                      +-+++|++.+++.+++|+++++.|.+.++|+.+.+  ..++|+++.+.|++|+ .|++|||.|.++...++++||+++++
T Consensus        39 ~g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~  118 (421)
T KOG0141|consen   39 FGLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRAS  118 (421)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhc
Confidence            34899999999999999999999999999999999  4789999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~  209 (291)
                      ..+++.++.|+.+++..|.+.|+++||++|||++.+|+-++++|+|||++|||+..+.++|++.+++|+|||.|.|||||
T Consensus       119 g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG  198 (421)
T KOG0141|consen  119 GGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNG  198 (421)
T ss_pred             CCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeC-----CCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHH
Q 022844          210 TFADVLVIFARNT-----TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKV  283 (291)
Q Consensus       210 ~~a~~~lv~a~~~-----~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~  283 (291)
                      +.||.++|.|+++     +..|+++|+|+++.||++..+..+|+|||++.||++.|+||+||++++||+. .|+-.+|.-
T Consensus       199 ~~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsg  278 (421)
T KOG0141|consen  199 PDADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSG  278 (421)
T ss_pred             CCCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecC
Confidence            9999999999985     2468999999999999999999999999999999999999999999999985 599999999


Q ss_pred             HHhhccCC
Q 022844          284 RLLCSKFL  291 (291)
Q Consensus       284 ~~~~r~~~  291 (291)
                      +..+||.|
T Consensus       279 Ld~ERLvl  286 (421)
T KOG0141|consen  279 LDLERLVL  286 (421)
T ss_pred             CChhHhhh
Confidence            99999875

>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.8e-50  Score=342.37  Aligned_cols=274  Identities=39%  Similarity=0.551  Sum_probs=262.2

Q ss_pred             cccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHH
Q 022844           16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL   95 (291)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l   95 (291)
                      .++.++..+++...-.++...+.+.+|++..|++++++.|++|++.+++.+|++|++++.|...++.+...||.++..+|
T Consensus        16 ~rs~~s~l~p~e~g~r~~s~~~~s~~P~f~qD~~~l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pem   95 (432)
T KOG0138|consen   16 LRSWVSSLAPTERGGRTQSQLSKSSRPEFWQDPLVLEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEM   95 (432)
T ss_pred             eeehhhcCchhhhccccccccccccCCccccchhhhhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhh
Confidence            45677888888888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEec
Q 022844           96 GALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT  175 (291)
Q Consensus        96 ~~~Gl~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~t  175 (291)
                      ..+|++|...+.||..|.|.+.+..+..|+.|.+.+....+.+|+++++..|..+|+++||++|||.+++|+.++||++|
T Consensus        96 GsmGvlG~tikGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLT  175 (432)
T KOG0138|consen   96 GSMGVLGPTIKGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLT  175 (432)
T ss_pred             hccccccCcccCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEecc
Confidence            99999998779999999999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCceEEEEeCCE--EEEEeeeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCcccc
Q 022844          176 EPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIV  253 (291)
Q Consensus       176 Ep~~Gsd~~~~~t~a~~~~~g--~~LnG~K~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~  253 (291)
                      ||++|||+..+.|+|++++.+  |.|||+|+||+|++.||+++|+||...++.+.-|+|+++.+|++..+++.|.++|++
T Consensus       176 EPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~n~I~GFi~~k~~~GL~apkI~gK~sLRas  255 (432)
T KOG0138|consen  176 EPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETDNKIRGFILEKGMRGLSAPKIEGKFSLRAS  255 (432)
T ss_pred             CCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccCCceeeEEEecCCCCCcCCCcCCeeeeeec
Confidence            999999999999999999888  999999999999999999999999875677999999999999999999999999999


Q ss_pred             ceeeEEEeeeEeCCCCCcCCCCcHHHHHHHHHhhcc
Q 022844          254 QNGDILLKKVFVPDEDRLPGVNSFQDTSKVRLLCSK  289 (291)
Q Consensus       254 ~~~~v~f~~v~Vp~~~vlg~~~g~~~~~~~~~~~r~  289 (291)
                      .++.|-+|||+||+|++|.+.++|+..+.++|.+|.
T Consensus       256 ~tG~Ilmd~V~VPeE~~LPg~~s~qgpf~cLnnaR~  291 (432)
T KOG0138|consen  256 ATGMILMDGVEVPEENLLPGASSLQGPFGCLNNARY  291 (432)
T ss_pred             ccCceeecCCcCChhhcCCCccccCCchhhhhhhhh
Confidence            999999999999999999999999999999999985

>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=3.5e-50  Score=342.42  Aligned_cols=237  Identities=30%  Similarity=0.427  Sum_probs=226.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 022844           52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (291)
Q Consensus        52 ~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~  130 (291)
                      ++.|+++|.++++.+++|..+++.|.+.++|+.+++|.+++++..++|+.+. +|+++||+|++.++.+.+.|+|+..|.
T Consensus        25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCt  104 (408)
T KOG0140|consen   25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCT  104 (408)
T ss_pred             ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccch
Confidence            4779999999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             cchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCC
Q 022844          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (291)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~  210 (291)
                      ++...+..|+ +++++|-.+|+++||++||++++...++++.|+|||++|||+..+.|+|++.+|.|+|||.|.||||+.
T Consensus       105 g~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G  183 (408)
T KOG0140|consen  105 GIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAG  183 (408)
T ss_pred             hHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCC
Confidence            9998888775 888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCC------CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHH
Q 022844          211 FADVLVIFARNTT------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKV  283 (291)
Q Consensus       211 ~a~~~lv~a~~~~------~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~  283 (291)
                      .|+|++|+||+++      .+++++|+|+.++||++.++.+.+||.|.+++..|.|+||+||.+|+||. +.||+..|..
T Consensus       184 ~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~  263 (408)
T KOG0140|consen  184 HANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGG  263 (408)
T ss_pred             ccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhh
Confidence            9999999999864      25699999999999999999999999999999999999999999999987 4699999999


Q ss_pred             HHhhcc
Q 022844          284 RLLCSK  289 (291)
Q Consensus       284 ~~~~r~  289 (291)
                      |+..|-
T Consensus       264 fd~tRp  269 (408)
T KOG0140|consen  264 FDKTRP  269 (408)
T ss_pred             ccCCCC
Confidence            998873

>PLN02526 acyl-coenzyme A oxidase

Probab=100.00  E-value=7.1e-47  Score=352.70  Aligned_cols=261  Identities=84%  Similarity=1.311  Sum_probs=239.8

Q ss_pred             ccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-ccc
Q 022844           28 ISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIK  106 (291)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~  106 (291)
                      .+..+|+.+|.++|||.-.+|+.||..++++++++++.+++|+.+++.|...+.++...+|.++|++|.+.||+++ + +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v-~   80 (412)
T PLN02526          2 VSVAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTI-K   80 (412)
T ss_pred             cccccccCCCCCCCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcc-c
Confidence            3567899999999999999999999999999999999999999999998877777778899999999999999999 7 9


Q ss_pred             CCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCC
Q 022844          107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASAL  186 (291)
Q Consensus       107 ~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~  186 (291)
                      +|||.|+++.+++.++|++++.|++.+.++..|+.++...|..+|+++||++||+++++|+.++++++|||+.|||+..+
T Consensus        81 ~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~  160 (412)
T PLN02526         81 GYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSL  160 (412)
T ss_pred             ccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhC
Confidence            99999999999999999999999887766666665666689999999999999999999999999999999999999999


Q ss_pred             ceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeC
Q 022844          187 NTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP  266 (291)
Q Consensus       187 ~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp  266 (291)
                      .|+|++++|||+|||+|.||+++..||+++|.+++++++++++|+||++.|||++.+.|+++|+|++++++|.|+||+||
T Consensus       161 ~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp  240 (412)
T PLN02526        161 NTTATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVP  240 (412)
T ss_pred             eeEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCCCCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEEC
Confidence            99999999999999999999999999999999998655678999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCCcHHHHHHHHHhhcc
Q 022844          267 DEDRLPGVNSFQDTSKVRLLCSK  289 (291)
Q Consensus       267 ~~~vlg~~~g~~~~~~~~~~~r~  289 (291)
                      ++++|++.+++......++..|+
T Consensus       241 ~~~~l~~~~~~~~~~~~~~~~r~  263 (412)
T PLN02526        241 DEDRLPGVNSFQDTNKVLAVSRV  263 (412)
T ss_pred             HHHhCCCcccHHHHHHHHHHHHH
Confidence            99999876678777777777665

>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed

Probab=100.00  E-value=6.5e-46  Score=363.02  Aligned_cols=257  Identities=25%  Similarity=0.280  Sum_probs=221.7

Q ss_pred             cchhccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHH-HHHHHHhhccchHHHHHHhCCCCh
Q 022844           11 DVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMK-VRECMEKEIAPIMAEYWEKAEFPF   89 (291)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~-~~~~~~~~~~p~~~~~d~~~~~p~   89 (291)
                      ++--.++++|+|+|+|++++++|+++                  |++|++++++. +++|+...  ....+.++.+.+|+
T Consensus        53 g~~~~~~~lF~G~~~~~~l~~~p~~~------------------Ls~ee~~~~d~~v~~l~~~~--~~~~~~~~~~~~P~  112 (777)
T PRK09463         53 GTVWWEGELFSGKPDWKKLLNYPKPT------------------LTAEEQAFLDGPVEELCRMV--NDWQITHELADLPP  112 (777)
T ss_pred             CCchhhhhhcCCCCChHHhcCCCCCC------------------CCHHHHHHHHHHHHHHHHHH--HHHHHhccccCCCH
Confidence            34456899999999999999888754                  68899999996 77776532  11122223478999


Q ss_pred             HHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHH-HHHHhcCCHHHHHHHHHHHhcCC
Q 022844           90 HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM-LTIALCGSEEQKQKYLPSLAQLN  167 (291)
Q Consensus        90 ~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~-~~l~~~Gt~~qk~~~l~~l~~G~  167 (291)
                      ++|+++++.||+++ +|++|||.|++..+++.++|++++.+.+++..+.++++++. .+|..+||++||++|||++++|+
T Consensus       113 e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge  192 (777)
T PRK09463        113 EVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGE  192 (777)
T ss_pred             HHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence            99999999999999 99999999999999999999999988887776667776664 58899999999999999999999


Q ss_pred             ceeEEEecCCCCCCCCCCCceEE-----EEeCC---EEEEEeeeecccCCCCCCEEEEEEEeCC---------CCCeEEE
Q 022844          168 TIACWALTEPAYGSDASALNTTA-----TKVEG---GWILEGQKRWIGNSTFADVLVIFARNTT---------TNQINGY  230 (291)
Q Consensus       168 ~~~~~a~tEp~~Gsd~~~~~t~a-----~~~~~---g~~LnG~K~~it~~~~a~~~lv~a~~~~---------~~~~~~f  230 (291)
                      .++|+++|||++|||+..+.|++     .++++   ||+|||+|+||||++.||+++|++++.+         +.++++|
T Consensus       193 ~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~f  272 (777)
T PRK09463        193 EIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCA  272 (777)
T ss_pred             ceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEE
Confidence            99999999999999998887644     34555   6999999999999999999999998621         3579999


Q ss_pred             EEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC----CCcHHHHHHHHHhhc
Q 022844          231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG----VNSFQDTSKVRLLCS  288 (291)
Q Consensus       231 lV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~----~~g~~~~~~~~~~~r  288 (291)
                      +||+++|||++.+.+.++|++ ..+++++|+||+||.+++||+    ++||++++.+++.+|
T Consensus       273 LVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR  333 (777)
T PRK09463        273 LIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGR  333 (777)
T ss_pred             EEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHH
Confidence            999999999999999999998 679999999999999999986    579999999999988

>cd01151 GCD Glutaryl-CoA dehydrogenase

Probab=100.00  E-value=2.2e-45  Score=340.15  Aligned_cols=239  Identities=43%  Similarity=0.714  Sum_probs=222.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCC
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDA  130 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~  130 (291)
                      |++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|.+.||++++|++|||.|+++.+...++|++++.|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~   88 (386)
T cd01151           9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIAREVERVDS   88 (386)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHHHHhhCh
Confidence            67779999999999999999999999888888888899999999999999999889999999999999999999999999


Q ss_pred             cchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCC
Q 022844          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (291)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~  210 (291)
                      +++..+.+|..++...|..+|+++||++|++++++|++++|+++|||++|||+..+.|+|+++++||+|||+|.|||++.
T Consensus        89 s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~  168 (386)
T cd01151          89 GYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSP  168 (386)
T ss_pred             hHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCC
Confidence            88776666665666678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCCcHHHHHHHHHhhcc
Q 022844          211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVRLLCSK  289 (291)
Q Consensus       211 ~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~g~~~~~~~~~~~r~  289 (291)
                      .||+++|.|++++++++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++|+++.|+..++..++..|+
T Consensus       169 ~Ad~~lv~ar~~~~~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~~~g~~~~~~~~~~~r~  247 (386)
T cd01151         169 IADVFVVWARNDETGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFKCLNNARY  247 (386)
T ss_pred             cCCEEEEEEEECCCCcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCccccHHHHHHHHHHHHH
Confidence            9999999999875567899999999999999999999999999999999999999999999887888888888887764

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.

>PRK13026 acyl-CoA dehydrogenase; Reviewed

Probab=100.00  E-value=3.3e-45  Score=356.98  Aligned_cols=256  Identities=26%  Similarity=0.294  Sum_probs=218.6

Q ss_pred             chhccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHH-HHHHHHHhhccchHHHHHHhCCCChH
Q 022844           12 VDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRM-KVRECMEKEIAPIMAEYWEKAEFPFH   90 (291)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~-~~~~~~~~~~~p~~~~~d~~~~~p~~   90 (291)
                      +--.++++|+|+|+|++++++|+++                  |++|++++.+ .++++++. + ......++.+.+|++
T Consensus        53 ~~~~~~~lf~G~~~~~~l~~~p~~~------------------l~~eeq~fl~~~v~~l~~~-~-~e~~~~~~~~~~P~e  112 (774)
T PRK13026         53 DVWWEGELFSGKPDWQKLHSYPKPT------------------LTAEEQAFIDNEVETLLTM-L-DDWDIVQNRKDLPPE  112 (774)
T ss_pred             CcchhhhhcCCCCChhhcCCCCccc------------------cCHHHHHHHHHHHHHHHhh-h-hhhhhhhhhcCCCHH
Confidence            4456889999999999999877754                  5677777766 56776652 2 223334567899999


Q ss_pred             HHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHH-HHHHHhcCCHHHHHHHHHHHhcCCc
Q 022844           91 VIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLA-MLTIALCGSEEQKQKYLPSLAQLNT  168 (291)
Q Consensus        91 ~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~-~~~l~~~Gt~~qk~~~l~~l~~G~~  168 (291)
                      +|++|++.||+++ +|++|||.|++..+.+.++|++++.+.+.+..+.++++++ ..+|..+||++||++|||++++|+.
T Consensus       113 vw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~  192 (774)
T PRK13026        113 VWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTE  192 (774)
T ss_pred             HHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCe
Confidence            9999999999999 9999999999999999999999998887776666776665 4589999999999999999999999


Q ss_pred             eeEEEecCCCCCCCCCCCceEEE-----EeCC---EEEEEeeeecccCCCCCCEEEEEEEe-CC--------CCCeEEEE
Q 022844          169 IACWALTEPAYGSDASALNTTAT-----KVEG---GWILEGQKRWIGNSTFADVLVIFARN-TT--------TNQINGYL  231 (291)
Q Consensus       169 ~~~~a~tEp~~Gsd~~~~~t~a~-----~~~~---g~~LnG~K~~it~~~~a~~~lv~a~~-~~--------~~~~~~fl  231 (291)
                      ++|+|+|||++|||+..++|+++     ++++   ||+|||+|+|||+++.||+++|.+++ ++        ..|+++|+
T Consensus       193 i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fL  272 (774)
T PRK13026        193 IPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCAL  272 (774)
T ss_pred             EEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEE
Confidence            99999999999999999886654     4565   69999999999999999999888764 21        24799999


Q ss_pred             EeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC----CCcHHHHHHHHHhhc
Q 022844          232 VKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG----VNSFQDTSKVRLLCS  288 (291)
Q Consensus       232 V~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~----~~g~~~~~~~~~~~r  288 (291)
                      ||+++|||++.+.++++|++.. +++++|+||+||.+++||+    ++||++++.+++.+|
T Consensus       273 Vp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR  332 (774)
T PRK13026        273 IPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGR  332 (774)
T ss_pred             EECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHH
Confidence            9999999999999999999864 6899999999999999986    469999999999988

>PLN02519 isovaleryl-CoA dehydrogenase

Probab=100.00  E-value=3e-43  Score=327.69  Aligned_cols=239  Identities=26%  Similarity=0.428  Sum_probs=217.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChH--HHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHc
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIAR  127 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~--~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~  127 (291)
                      -|+.+++++.++++.+++|+++++.|...+.|+.+.+|.+  +|++|++.||+++ +|+++||.|+++.+.+.++|++++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~  101 (404)
T PLN02519         22 SSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISR  101 (404)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhh
Confidence            3556899999999999999999999998888888888876  7999999999999 999999999999999999999999


Q ss_pred             cCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeeccc
Q 022844          128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG  207 (291)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it  207 (291)
                      .|+++++.+.+|...+...|..+|+++||++|||++.+|+.++|+++|||+.|||...+.|+|++++|||+|||+|+|||
T Consensus       102 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs  181 (404)
T PLN02519        102 ASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCT  181 (404)
T ss_pred             hcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeec
Confidence            99999887766765556678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHH
Q 022844          208 NSTFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKV  283 (291)
Q Consensus       208 ~~~~a~~~lv~a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~  283 (291)
                      ++..||+++|.|++++   ..++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||. +.|+..++..
T Consensus       182 ~a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~  261 (404)
T PLN02519        182 NGPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSG  261 (404)
T ss_pred             CCCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHH
Confidence            9999999999999753   24689999999999999999999999999999999999999999999987 4688777777


Q ss_pred             HHhhcc
Q 022844          284 RLLCSK  289 (291)
Q Consensus       284 ~~~~r~  289 (291)
                      ++..|+
T Consensus       262 ~~~~r~  267 (404)
T PLN02519        262 LDLERL  267 (404)
T ss_pred             HHHHHH
Confidence            776664

>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=5.9e-43  Score=323.32  Aligned_cols=236  Identities=23%  Similarity=0.277  Sum_probs=209.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhc-cchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEI-APIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~-~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~  128 (291)
                      |++.+|++++++++.+++|+++++ .+...+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++++++++
T Consensus         1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~   80 (380)
T PRK03354          1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRL   80 (380)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence            456799999999999999999886 46666778888999999999999999999 9999999999999999999999999


Q ss_pred             CCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccC
Q 022844          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN  208 (291)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~  208 (291)
                      |+++++.+.++.  ....+..+|+++||++||+++++|+.+.++++|||+.|||...+.|+|++++|||+|||+|+|||+
T Consensus        81 ~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~  158 (380)
T PRK03354         81 GAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITS  158 (380)
T ss_pred             CcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcC
Confidence            998775444332  245788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHH
Q 022844          209 STFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVR  284 (291)
Q Consensus       209 ~~~a~~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~  284 (291)
                      +..||+++|.|++++.   .++++|+||++.+||++. .|+++|+|++++++|.|+||+||+++++|++ +|+......+
T Consensus       159 ~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~  237 (380)
T PRK03354        159 SAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEF  237 (380)
T ss_pred             CCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHH
Confidence            9999999999997422   357889999999999986 5899999999999999999999999999874 5887766666


Q ss_pred             Hhhcc
Q 022844          285 LLCSK  289 (291)
Q Consensus       285 ~~~r~  289 (291)
                      +..|.
T Consensus       238 ~~~r~  242 (380)
T PRK03354        238 DHERF  242 (380)
T ss_pred             HHHHH
Confidence            66553

>PRK12341 putative acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=8.2e-43  Score=322.46  Aligned_cols=235  Identities=20%  Similarity=0.278  Sum_probs=209.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhcc-chHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIA-PIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~-p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~  128 (291)
                      |++.++++++++++.+++|+.+.+. +...++|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|++++.
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~   80 (381)
T PRK12341          1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKC   80 (381)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhc
Confidence            5677999999999999999999886 4667778888999999999999999999 9999999999999999999999999


Q ss_pred             CCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHH-hcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeeccc
Q 022844          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL-AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG  207 (291)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l-~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it  207 (291)
                      |.+. ..  .++..+...|..+|+++||++||+++ .+|+.++++++|||+.|||...+.|+|++++|||+|||+|+|||
T Consensus        81 ~~~~-~~--~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is  157 (381)
T PRK12341         81 GAPA-FL--ITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFIT  157 (381)
T ss_pred             ChhH-HH--HhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEc
Confidence            9873 22  23334555678899999999999998 59998899999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHH
Q 022844          208 NSTFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSK  282 (291)
Q Consensus       208 ~~~~a~~~lv~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~  282 (291)
                      |+..||+++|.|+++++    .++++|+||++.|||++. .|+++|++++++++|.|+||+||++++||. ++|+..++.
T Consensus       158 ~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~~-~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~  236 (381)
T PRK12341        158 GAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKIN-PLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMY  236 (381)
T ss_pred             CCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceeec-ccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHH
Confidence            99999999999997532    358999999999999995 589999999999999999999999999987 458887777


Q ss_pred             HHHhhcc
Q 022844          283 VRLLCSK  289 (291)
Q Consensus       283 ~~~~~r~  289 (291)
                      .++..|.
T Consensus       237 ~~~~~r~  243 (381)
T PRK12341        237 NFEMERL  243 (381)
T ss_pred             HHHhHHH
Confidence            7776664

>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase

Probab=100.00  E-value=5.4e-43  Score=326.48  Aligned_cols=256  Identities=27%  Similarity=0.378  Sum_probs=223.9

Q ss_pred             cccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHH
Q 022844           16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL   95 (291)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l   95 (291)
                      .++.|+|..+...++.+|.             |  |++.++++++++++.+++|+++.+.|.  .+++.+.+|.++|++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l   65 (409)
T cd01161           3 ALNMFLGDIVTKQVFPYPS-------------V--LTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQL   65 (409)
T ss_pred             hhHhhcCCcchhhcCCCcc-------------c--cCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHH
Confidence            4566778777777775553             3  344589999999999999999999886  3466778999999999


Q ss_pred             HhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEe
Q 022844           96 GALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL  174 (291)
Q Consensus        96 ~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~  174 (291)
                      ++.||+++ +|+++||.|+++.+++.++|++++ |++++..+..|..++...+..+|+++|+++|++++++|+.++++++
T Consensus        66 ~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~  144 (409)
T cd01161          66 KELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFAL  144 (409)
T ss_pred             HhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEe
Confidence            99999999 999999999999999999999999 8887776666655555567889999999999999999999999999


Q ss_pred             cCCCCCCCCCCCceEEEEe--CCEEEEEeeeecccCCCCCCEEEEEEEeCC-------CCCeEEEEEeCCCCCeEEeccC
Q 022844          175 TEPAYGSDASALNTTATKV--EGGWILEGQKRWIGNSTFADVLVIFARNTT-------TNQINGYLVKKDAPGLTVTKIE  245 (291)
Q Consensus       175 tEp~~Gsd~~~~~t~a~~~--~~g~~LnG~K~~it~~~~a~~~lv~a~~~~-------~~~~~~flV~~~~~Gv~~~~~~  245 (291)
                      |||++|||...+.|+|+++  ++||+|||+|.||||+..||+++|.|++++       .+++++|+||++.|||++.+.|
T Consensus       145 tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~  224 (409)
T cd01161         145 TEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPE  224 (409)
T ss_pred             cCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcc
Confidence            9999999999999999984  457999999999999999999999999751       1468899999999999999999


Q ss_pred             CccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhcc
Q 022844          246 NKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCSK  289 (291)
Q Consensus       246 ~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r~  289 (291)
                      +++|++++++++|.|+||+||++++||.. .|+..++..++..|.
T Consensus       225 ~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~  269 (409)
T cd01161         225 KKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRF  269 (409)
T ss_pred             cccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHHH
Confidence            99999999999999999999999999874 588888888887764

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.

>cd01156 IVD Isovaleryl-CoA dehydrogenase

Probab=100.00  E-value=1e-42  Score=321.20  Aligned_cols=235  Identities=31%  Similarity=0.455  Sum_probs=215.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 022844           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (291)
Q Consensus        55 l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~  133 (291)
                      ++++++++++.+++|+++.+.|.+.+.|+.+.+|.++|+.|++.||+++ +|++|||.|+++.+.+.++|++++.|++++
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~   81 (376)
T cd01156           2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVA   81 (376)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHH
Confidence            5689999999999999999999888888888899999999999999999 999999999999999999999999999988


Q ss_pred             hHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCC
Q 022844          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (291)
Q Consensus       134 ~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~  213 (291)
                      +.+..|..++...|..+|+++||++|++++++|++++++++|||..|||...++++|+++++||+|||+|.|||++..||
T Consensus        82 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~  161 (376)
T cd01156          82 LSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD  161 (376)
T ss_pred             HHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence            76666655556678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844          214 VLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK  289 (291)
Q Consensus       214 ~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~  289 (291)
                      +++|.|+++++   .++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||. +.|+..++..++..|.
T Consensus       162 ~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~  241 (376)
T cd01156         162 TLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERL  241 (376)
T ss_pred             EEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHH
Confidence            99999997532   4689999999999999999999999999999999999999999999987 4688877777776654

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.

>cd01157 MCAD Medium chain acyl-CoA dehydrogenase

Probab=100.00  E-value=1.4e-42  Score=320.64  Aligned_cols=234  Identities=27%  Similarity=0.430  Sum_probs=211.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 022844           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (291)
Q Consensus        55 l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~  133 (291)
                      ++++++++++.+++|+++.+.|.+.++|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.|++++
T Consensus         1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~   80 (378)
T cd01157           1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQ   80 (378)
T ss_pred             CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHH
Confidence            4678999999999999999999888888888999999999999999999 999999999999999999999999998876


Q ss_pred             hHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCC
Q 022844          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (291)
Q Consensus       134 ~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~  213 (291)
                      +.+..+ .++...+..+|+++||++||+++++|+.++++++|||+.|||...+.|++++++|||+|||+|.|||++..||
T Consensus        81 ~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad  159 (378)
T cd01157          81 TAIEAN-SLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN  159 (378)
T ss_pred             HHHHhh-hhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCC
Confidence            554333 3444566778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCCC------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHh
Q 022844          214 VLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLL  286 (291)
Q Consensus       214 ~~lv~a~~~~~------~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~  286 (291)
                      +++|.++++++      +++++|+||++.|||++.+.|.++|+++++++++.|+||+||++++||.. .|+..+...++.
T Consensus       160 ~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~  239 (378)
T cd01157         160 WYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDK  239 (378)
T ss_pred             EEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhh
Confidence            99999997532      35889999999999999999999999999999999999999999999874 588888877776


Q ss_pred             hcc
Q 022844          287 CSK  289 (291)
Q Consensus       287 ~r~  289 (291)
                      .|.
T Consensus       240 ~r~  242 (378)
T cd01157         240 TRP  242 (378)
T ss_pred             hHH
Confidence            654

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.

>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit

Probab=100.00  E-value=1.1e-42  Score=320.99  Aligned_cols=233  Identities=21%  Similarity=0.216  Sum_probs=205.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccchHHH--HHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844           53 DLLTSEEQAVRMKVRECMEKEIAPIMAE--YWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (291)
Q Consensus        53 ~~l~~~~~~l~~~~~~~~~~~~~p~~~~--~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~  129 (291)
                      +.++++++++++.+++|+++.+.+....  .++.+.+|.++|++|++.||+++ +|++|||.|++..+.+.++|++++.+
T Consensus         2 ~~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~   81 (378)
T TIGR03203         2 FDLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL   81 (378)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcc
Confidence            3478999999999999999998875442  45677899999999999999999 99999999999999999999999987


Q ss_pred             CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~  209 (291)
                      .+.+. + .+..++..++..+|+++||++|||++++|+.+.++++|||++|||...+.|+|++++|+|+|||+|.|||++
T Consensus        82 ~~~~~-~-~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a  159 (378)
T TIGR03203        82 VLEPY-L-ATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNG  159 (378)
T ss_pred             cchHH-H-HHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCC
Confidence            65442 2 222244567889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHH
Q 022844          210 TFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVR  284 (291)
Q Consensus       210 ~~a~~~lv~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~  284 (291)
                      ..||+++|+|++++    .+++++|+||++.|||++.+.+.++|+   .+++|.|+||+||++++||+ ++|++.++..+
T Consensus       160 ~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l  236 (378)
T TIGR03203       160 ETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVV  236 (378)
T ss_pred             ccCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHH
Confidence            99999999999742    357999999999999999877777776   56899999999999999987 46899999999


Q ss_pred             HhhccC
Q 022844          285 LLCSKF  290 (291)
Q Consensus       285 ~~~r~~  290 (291)
                      +..|..
T Consensus       237 ~~~r~~  242 (378)
T TIGR03203       237 DDARAA  242 (378)
T ss_pred             HHHHHH
Confidence            988764

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-42  Score=322.08  Aligned_cols=235  Identities=25%  Similarity=0.353  Sum_probs=213.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCc
Q 022844           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS  131 (291)
Q Consensus        53 ~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~  131 (291)
                      +.++++++++++.+++|+.+++.|.+.+.|+.+.+|+++|++|++.||+++ +|++|||.|+++.+.+.++|++++.+++
T Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s  114 (410)
T PTZ00461         35 YNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPG  114 (410)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCch
Confidence            468999999999999999999999988888888999999999999999999 9999999999999999999999999988


Q ss_pred             chhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCC-EEEEEeeeecccCCC
Q 022844          132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQKRWIGNST  210 (291)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~-g~~LnG~K~~it~~~  210 (291)
                      ++..+..|..+....+..+|+++||++|||++++|++++++++|||+.|||...+.|+++++++ ||+|||+|.||||+.
T Consensus       115 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~  194 (410)
T PTZ00461        115 FCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT  194 (410)
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCc
Confidence            7665555654455677889999999999999999999999999999999999999999999765 799999999999999


Q ss_pred             CCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhcc
Q 022844          211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCSK  289 (291)
Q Consensus       211 ~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r~  289 (291)
                      .||+++|.|+++  +++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++||.+ .|+..+...++..|+
T Consensus       195 ~Ad~~lv~a~~~--~~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~  272 (410)
T PTZ00461        195 VADVFLIYAKVD--GKITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERV  272 (410)
T ss_pred             cCCEEEEEEEeC--CceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHH
Confidence            999999999975  35899999999999999999999999999999999999999999999874 688877777776664

>cd01162 IBD Isobutyryl-CoA dehydrogenase

Probab=100.00  E-value=3.7e-42  Score=317.48  Aligned_cols=234  Identities=29%  Similarity=0.455  Sum_probs=214.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 022844           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (291)
Q Consensus        55 l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~  133 (291)
                      ++++++++++.+++|+++++.|.+.++|..+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++|++++
T Consensus         1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~   80 (375)
T cd01162           1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTA   80 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHH
Confidence            4688999999999999999999888888889999999999999999999 999999999999999999999999999988


Q ss_pred             hHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCC
Q 022844          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (291)
Q Consensus       134 ~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~  213 (291)
                      .++..|. .+..++..+|+++||++|++++.+|+.++++++|||+.|||...+.|+++++++||+|||+|+|||++..||
T Consensus        81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad  159 (375)
T cd01162          81 AYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD  159 (375)
T ss_pred             HHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCC
Confidence            7666664 455678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhcc
Q 022844          214 VLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCSK  289 (291)
Q Consensus       214 ~~lv~a~~~~--~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r~  289 (291)
                      +++|.+++++  ..++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||.. .|++.....++..|+
T Consensus       160 ~~~v~a~~~~~~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~  238 (375)
T cd01162         160 VYVVMARTGGEGPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRL  238 (375)
T ss_pred             EEEEEEEecCCCCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHH
Confidence            9999999753  246889999999999999999999999999999999999999999999874 588877777766553

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.

>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase

Probab=100.00  E-value=2.8e-42  Score=317.98  Aligned_cols=234  Identities=27%  Similarity=0.327  Sum_probs=211.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 022844           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (291)
Q Consensus        55 l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~  133 (291)
                      ++++++++++.+++|+++.+.|...+.|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+.+.++|++++.+++++
T Consensus         1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~   80 (372)
T TIGR03207         1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS   80 (372)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence            4678999999999999999999988888888999999999999999999 999999999999999999999999999987


Q ss_pred             hHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCC
Q 022844          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (291)
Q Consensus       134 ~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~  213 (291)
                      ++...+ .++...+..+|+++||++||+++++|+.++++++|||+.|||...+.|+|++++|||+|||+|.|||++..||
T Consensus        81 ~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad  159 (372)
T TIGR03207        81 YVNLLA-SLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQAD  159 (372)
T ss_pred             HHHHhh-hHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCC
Confidence            654332 3555678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhc
Q 022844          214 VLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCS  288 (291)
Q Consensus       214 ~~lv~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r  288 (291)
                      +++|++++++    ..++++|+||++.|||++. .|+++|+|++++++|.|+||+||++++||. +.|+..++..++..|
T Consensus       160 ~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r  238 (372)
T TIGR03207       160 AAVVFARTGSEAEGARGISAFLVPMDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSR  238 (372)
T ss_pred             EEEEEEEcCCCCCCCCceEEEEEcCCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHH
Confidence            9999999742    2368899999999999975 688999999999999999999999999987 468888888888877


Q ss_pred             cC
Q 022844          289 KF  290 (291)
Q Consensus       289 ~~  290 (291)
                      +.
T Consensus       239 ~~  240 (372)
T TIGR03207       239 AL  240 (372)
T ss_pred             HH
Confidence            53

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.

>cd01160 LCAD Long chain acyl-CoA dehydrogenase

Probab=100.00  E-value=7e-42  Score=315.22  Aligned_cols=231  Identities=29%  Similarity=0.412  Sum_probs=209.1

Q ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHH
Q 022844           58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI  136 (291)
Q Consensus        58 ~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~  136 (291)
                      +++++++.+++|+.+.+.|.+.+.|+.+.+|+++|++|++.||+++ +|++|||.|+++.+.+.++|++++++.+ +..+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~   80 (372)
T cd01160           2 EHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGL   80 (372)
T ss_pred             hHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHH
Confidence            6789999999999999999888888888999999999999999999 9999999999999999999999996654 4445


Q ss_pred             HHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEE
Q 022844          137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV  216 (291)
Q Consensus       137 ~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~l  216 (291)
                      .+|...+..++..+|+++||++||+++.+|+.++|+++|||++|||...+.|+++++++||+|||+|.||||+..||+++
T Consensus        81 ~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~  160 (372)
T cd01160          81 SLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVI  160 (372)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEE
Confidence            55654556688899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCC----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhcc
Q 022844          217 IFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCSK  289 (291)
Q Consensus       217 v~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r~  289 (291)
                      |.|+++++    +++++|+||++.||+++.+.|+++|++++++++|.|+||+||++++||.. .|+..+...++..|+
T Consensus       161 v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~  238 (372)
T cd01160         161 VVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERL  238 (372)
T ss_pred             EEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHH
Confidence            99997532    46899999999999999999999999999999999999999999999874 588877777776654

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.

>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit

Probab=100.00  E-value=4.9e-41  Score=311.79  Aligned_cols=234  Identities=25%  Similarity=0.300  Sum_probs=203.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccchHHHHH-HhCCCCh----HHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHH
Q 022844           52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYW-EKAEFPF----HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI  125 (291)
Q Consensus        52 ~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d-~~~~~p~----~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l  125 (291)
                      |+.++++++++++.+++|+++++.|...+.+ +...+|.    ++|+++.+.||+++ +|++|||.|+++.+++.++|++
T Consensus         1 ~~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eel   80 (395)
T TIGR03204         1 DLAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEEL   80 (395)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHH
Confidence            3558999999999999999999988765432 3334553    89999999999999 9999999999999999999999


Q ss_pred             HccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeec
Q 022844          126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW  205 (291)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~  205 (291)
                      ++++.+.++...++  ++...|..+|+++||++|||++++|+.+.++++|||++|||...+.|++++++++|+|||+|.|
T Consensus        81 g~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~  158 (395)
T TIGR03204        81 QSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTW  158 (395)
T ss_pred             HhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEe
Confidence            99998877543322  3344788899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHH
Q 022844          206 IGNSTFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDT  280 (291)
Q Consensus       206 it~~~~a~~~lv~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~  280 (291)
                      |+|+..||+++|.|++++    ..++++|+||.+.|||++.+....+|  +.++++|.|+||+||++++||. ++|+...
T Consensus       159 vt~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~  236 (395)
T TIGR03204       159 TTLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYA  236 (395)
T ss_pred             ecCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHH
Confidence            999999999999999752    24689999999999999987766665  5689999999999999999987 4689988


Q ss_pred             HHHHHhhcc
Q 022844          281 SKVRLLCSK  289 (291)
Q Consensus       281 ~~~~~~~r~  289 (291)
                      +..++..|.
T Consensus       237 ~~~l~~~r~  245 (395)
T TIGR03204       237 KFLLGNERT  245 (395)
T ss_pred             HHHHHHHHH
Confidence            888888764

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

Probab=100.00  E-value=3.3e-40  Score=304.08  Aligned_cols=232  Identities=41%  Similarity=0.586  Sum_probs=212.3

Q ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHH
Q 022844           58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI  136 (291)
Q Consensus        58 ~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~  136 (291)
                      +++++++.+++|+.+++.+.+.+.|+.+.+|.+.|+.|++.||+++ +|+++||.|.++.+++.++|+++++|+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~   81 (373)
T cd01158           2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIV   81 (373)
T ss_pred             hHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHH
Confidence            5789999999999999998888888888899999999999999999 999999999999999999999999999998877


Q ss_pred             HHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEE
Q 022844          137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV  216 (291)
Q Consensus       137 ~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~l  216 (291)
                      ..|...+..++..+|+++|+++|++++.+|+.++++++|||..|||...+.++++++++||+|||+|.|+|++..||+++
T Consensus        82 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~l  161 (373)
T cd01158          82 SVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYI  161 (373)
T ss_pred             HHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEE
Confidence            77765566788899999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             EEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhcc
Q 022844          217 IFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCSK  289 (291)
Q Consensus       217 v~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r~  289 (291)
                      |.++++++   .++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||.. .|+....+.++..|+
T Consensus       162 v~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~  238 (373)
T cd01158         162 VFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRI  238 (373)
T ss_pred             EEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHH
Confidence            99987532   45889999999999999999999999999999999999999999999874 588877777766654

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.

>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=4.9e-41  Score=307.92  Aligned_cols=262  Identities=26%  Similarity=0.346  Sum_probs=230.9

Q ss_pred             CCccchhccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHH----HHHHHHHHhhccchHHHHHH
Q 022844            8 HQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVR----MKVRECMEKEIAPIMAEYWE   83 (291)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~----~~~~~~~~~~~~p~~~~~d~   83 (291)
                      ..+.+|...+.+|.+...-+.+++||...                   ++|+.++.    +..++|+.+...  .+..|+
T Consensus        48 ~~i~~rs~~~~lF~~~~v~k~v~~yPev~-------------------~~e~~~~~~~~~~pl~r~f~e~~d--~~k~d~  106 (634)
T KOG0137|consen   48 ASIESRSFARGLFRGKLVTKDVFPYPEVI-------------------TSEQKELLEQFVLPLERFFEEVND--SKKNDK  106 (634)
T ss_pred             CCccchhHHHHhhhhhhhhhhhcCCcccC-------------------cHHHHHHHHhhhhhHHHhhhccch--hhhhhh
Confidence            45677788888888888888888776553                   44555554    445666655433  344567


Q ss_pred             hCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHH
Q 022844           84 KAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPS  162 (291)
Q Consensus        84 ~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~  162 (291)
                      ....+++.++.|+++|++|+ +|++|+|.|+.+..++.+.|.++.++.++++.+..|.+++...|..+|+++||++|||+
T Consensus       107 ~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~  186 (634)
T KOG0137|consen  107 LGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPK  186 (634)
T ss_pred             hcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHh
Confidence            88999999999999999999 99999999999999999999999999999988888888888899999999999999999


Q ss_pred             HhcCCceeEEEecCCCCCCCCCCCceEEEEeCCE--EEEEeeeecccCCCCCCEEEEEEEeCC-------CCCeEEEEEe
Q 022844          163 LAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTT-------TNQINGYLVK  233 (291)
Q Consensus       163 l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g--~~LnG~K~~it~~~~a~~~lv~a~~~~-------~~~~~~flV~  233 (291)
                      +++|+.+++||+|||..|||+...+|+|+...||  |+|||.|.||+|+..||+++|+|+++-       .+++++|||+
T Consensus       187 LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flve  266 (634)
T KOG0137|consen  187 LASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVE  266 (634)
T ss_pred             hhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCccccCceEEEEEe
Confidence            9999999999999999999999999999987755  999999999999999999999999851       2569999999


Q ss_pred             CCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhccC
Q 022844          234 KDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCSKF  290 (291)
Q Consensus       234 ~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r~~  290 (291)
                      ++..||+-.+++.+||.|++.+++|.|++|.||.+++||.+ .|++..++++|.+|.-
T Consensus       267 r~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~  324 (634)
T KOG0137|consen  267 RDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFG  324 (634)
T ss_pred             ccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcc
Confidence            99999999999999999999999999999999999999985 6999999999999863

>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2

Probab=100.00  E-value=1.4e-39  Score=302.17  Aligned_cols=231  Identities=22%  Similarity=0.244  Sum_probs=196.2

Q ss_pred             HHHHHHHHHHHHHhhccchHHHHHHhC-------CCC----hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHH
Q 022844           59 EQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP----FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIA  126 (291)
Q Consensus        59 ~~~l~~~~~~~~~~~~~p~~~~~d~~~-------~~p----~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~  126 (291)
                      .+++++.+++|+++++.|...+.|+.+       .+|    +++|+.++++||+++ +|++|||.|+++.+.+.++|+++
T Consensus         3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~   82 (394)
T cd01155           3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETG   82 (394)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHh
Confidence            578999999999999999877776431       134    589999999999999 99999999999999999999999


Q ss_pred             ccCC-cchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCC-CCCCCCCCceEEEEeCCEEEEEeeee
Q 022844          127 RVDA-SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTATKVEGGWILEGQKR  204 (291)
Q Consensus       127 ~~~~-~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~-~Gsd~~~~~t~a~~~~~g~~LnG~K~  204 (291)
                      +++. +.++....+...+..+|..+|+++||++|||++++|+.++++++|||+ .|||...+.|+++++++||+|||+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~  162 (394)
T cd01155          83 RSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKW  162 (394)
T ss_pred             hhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEE
Confidence            9863 323212222222345789999999999999999999999999999997 68999999999999999999999999


Q ss_pred             cccCCCC--CCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccc--cceeeEEEeeeEeCCCCCcCCC-
Q 022844          205 WIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRI--VQNGDILLKKVFVPDEDRLPGV-  274 (291)
Q Consensus       205 ~it~~~~--a~~~lv~a~~~~~-----~~~~~flV~~~~~Gv~~~~~~~~~G~r~--~~~~~v~f~~v~Vp~~~vlg~~-  274 (291)
                      ||||+.+  +++++|.++++++     .++++|+||++.||+++.+.|+++|+|+  +++++|.|+||+||++++||.. 
T Consensus       163 ~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~  242 (394)
T cd01155         163 WSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEG  242 (394)
T ss_pred             EEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCC
Confidence            9999965  7899999987532     4689999999999999999999999997  5789999999999999999874 


Q ss_pred             CcHHHHHHHHHhhcc
Q 022844          275 NSFQDTSKVRLLCSK  289 (291)
Q Consensus       275 ~g~~~~~~~~~~~r~  289 (291)
                      .|++.+...++..|+
T Consensus       243 ~g~~~~~~~~~~~r~  257 (394)
T cd01155         243 RGFEIAQGRLGPGRI  257 (394)
T ss_pred             hHHHHHHHHhhhhHH
Confidence            588888888777664

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.

>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]

Probab=100.00  E-value=3.1e-39  Score=299.74  Aligned_cols=236  Identities=36%  Similarity=0.504  Sum_probs=208.4

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccchHHHHHH---hCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844           54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (291)
Q Consensus        54 ~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~---~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~  129 (291)
                      .+++++.++++.+++|+.+.+.|...+.+.   ...+|.++++++++.|++++ +|++|||.|++......+.|++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~   83 (393)
T COG1960           4 DLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARAD   83 (393)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhC
Confidence            356789999999999999999887777765   57889999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhHH---HHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCc-eEEEEeCCEEEEEeeeec
Q 022844          130 ASCSTFILVHSSL---AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN-TTATKVEGGWILEGQKRW  205 (291)
Q Consensus       130 ~~~~~~~~~~~~~---~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~-t~a~~~~~g~~LnG~K~~  205 (291)
                      ++.+..+..+...   ....+..+|+++||++|||++++|++++|+++|||.+|||+..+. |++++.+++|+|||+|+|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~  163 (393)
T COG1960          84 AGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIW  163 (393)
T ss_pred             cchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEE
Confidence            8776644444321   223677899999999999999999999999999999999999887 777776666999999999


Q ss_pred             ccCCCCCCEEEEEEEeCCC----CCeEEEEEeCC-CCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHH
Q 022844          206 IGNSTFADVLVIFARNTTT----NQINGYLVKKD-APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQD  279 (291)
Q Consensus       206 it~~~~a~~~lv~a~~~~~----~~~~~flV~~~-~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~  279 (291)
                      |||+..||+++|+|++++.    +++++|+||++ .|||++.+.+.+.|+|++++++|.|+||+||.+++||+ +.||..
T Consensus       164 is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~  243 (393)
T COG1960         164 ISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKI  243 (393)
T ss_pred             EcCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHH
Confidence            9999999999999998643    57999999999 59999999885449999999999999999999999996 469999


Q ss_pred             HHHHHHhhcc
Q 022844          280 TSKVRLLCSK  289 (291)
Q Consensus       280 ~~~~~~~~r~  289 (291)
                      ++..++.+|+
T Consensus       244 ~~~~l~~~r~  253 (393)
T COG1960         244 AMETLNVERL  253 (393)
T ss_pred             HHHhhchHHH
Confidence            9999999886

>PTZ00456 acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=1.9e-39  Score=313.80  Aligned_cols=230  Identities=18%  Similarity=0.194  Sum_probs=197.9

Q ss_pred             HHHHHHHHHHHHHHHhhccchHHHHHHhCCC---------C---hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 022844           57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEF---------P---FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (291)
Q Consensus        57 ~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~---------p---~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e  123 (291)
                      +..+++++.+++|+++++.|.+.+.|+++.+         |   .++|+++.+.||+++ +|++|||.|++......+.|
T Consensus        58 ~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E  137 (622)
T PTZ00456         58 ELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRE  137 (622)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHH
Confidence            4678899999999999999998888876533         5   589999999999999 99999999999875555566


Q ss_pred             HHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCE-EEEEee
Q 022844          124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQ  202 (291)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g-~~LnG~  202 (291)
                      .++++++++++++..+ .+++..|..+|+++||++|||++++|++++++++|||++|||+..++|+|++++|| |+|||+
T Consensus       138 ~~~~a~~~~~~~~~l~-~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~  216 (622)
T PTZ00456        138 LMATANWGFSMYPGLS-IGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGT  216 (622)
T ss_pred             HHHHhchHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeE
Confidence            6777777765544332 24456899999999999999999999999999999999999999999999999875 999999


Q ss_pred             eecccCCCCC----CEEEEEEEeCC----CCCeEEEEEeCCC----------CCeEEeccCCccCccccceeeEEEeeeE
Q 022844          203 KRWIGNSTFA----DVLVIFARNTT----TNQINGYLVKKDA----------PGLTVTKIENKIGLRIVQNGDILLKKVF  264 (291)
Q Consensus       203 K~~it~~~~a----~~~lv~a~~~~----~~~~~~flV~~~~----------~Gv~~~~~~~~~G~r~~~~~~v~f~~v~  264 (291)
                      |+|||++..+    ++++|+||+++    .+|+++|+||++.          +||++.+.++++|++++++++|.|+|  
T Consensus       217 K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~--  294 (622)
T PTZ00456        217 KIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFEN--  294 (622)
T ss_pred             EEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeC--
Confidence            9999999863    68899999853    3679999999864          47888899999999999999999999  


Q ss_pred             eCCCCCcCCC-CcHHHHHHHHHhhccC
Q 022844          265 VPDEDRLPGV-NSFQDTSKVRLLCSKF  290 (291)
Q Consensus       265 Vp~~~vlg~~-~g~~~~~~~~~~~r~~  290 (291)
                       +.+++||++ +|++.++.++|.+|+.
T Consensus       295 -~~~~llG~~~~Gl~~~~~~mn~aRl~  320 (622)
T PTZ00456        295 -SVGYLIGEPNAGMKQMFTFMNTARVG  320 (622)
T ss_pred             -hhHhhcCCCChHHHHHHHHHHHHHHH
Confidence             468999985 6999999999999863

>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

Probab=100.00  E-value=4.1e-39  Score=297.67  Aligned_cols=229  Identities=29%  Similarity=0.374  Sum_probs=201.8

Q ss_pred             HHHHHHHHHHHHHHhhccchHHHH-----HHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCc
Q 022844           58 EEQAVRMKVRECMEKEIAPIMAEY-----WEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS  131 (291)
Q Consensus        58 ~~~~l~~~~~~~~~~~~~p~~~~~-----d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~  131 (291)
                      +++++++.+++|+++++.|....+     ++.+.+|.+++++|++.||+++ +|+++||.|.++.+.+.++|++++++++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~   81 (380)
T cd01152           2 SEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAP   81 (380)
T ss_pred             cHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCC
Confidence            578999999999999998876533     3456788999999999999999 9999999999999999999999999998


Q ss_pred             chhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCC
Q 022844          132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTF  211 (291)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~  211 (291)
                      +++.+..+ ..+...|..+|+++||++||+++++|+.+.++++|||+.|||...+.++++++++||+|||+|.|||++..
T Consensus        82 ~~~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~  160 (380)
T cd01152          82 VPFNQIGI-DLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHY  160 (380)
T ss_pred             cccchhhH-HHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccc
Confidence            87642222 23445788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHh
Q 022844          212 ADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLL  286 (291)
Q Consensus       212 a~~~lv~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~  286 (291)
                      ||+++|.|++++    ..++++|+||++.|||++.+.+.++|  ++.++++.|+||+||.+++||+. .|+..+...++.
T Consensus       161 ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~  238 (380)
T cd01152         161 ADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNF  238 (380)
T ss_pred             cCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHh
Confidence            999999999753    23689999999999999999998887  45889999999999999999874 589888888887


Q ss_pred             hcc
Q 022844          287 CSK  289 (291)
Q Consensus       287 ~r~  289 (291)
                      .|.
T Consensus       239 ~r~  241 (380)
T cd01152         239 ERV  241 (380)
T ss_pred             ccc
Confidence            764

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5

Probab=100.00  E-value=1.4e-37  Score=289.82  Aligned_cols=222  Identities=24%  Similarity=0.269  Sum_probs=196.1

Q ss_pred             HHHHHHHHHhhccchHHHHHHhCC--------CC---hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 022844           63 RMKVRECMEKEIAPIMAEYWEKAE--------FP---FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (291)
Q Consensus        63 ~~~~~~~~~~~~~p~~~~~d~~~~--------~p---~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~  130 (291)
                      ++.+++|+.+++.|.+.++|+...        +|   .++|++|++.||+++ +|++|||.|.++.+...++|+++++|.
T Consensus         2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~   81 (407)
T cd01153           2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA   81 (407)
T ss_pred             hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence            578899999999998888876654        88   678999999999999 999999999999999999999999998


Q ss_pred             cchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeeeecccCC
Q 022844          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNS  209 (291)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~it~~  209 (291)
                      ++++.+..+  .+...+..+|+++||++|++++++|+.++|+++|||+.|||+..+.|+++++ +|||+|||+|.|||++
T Consensus        82 s~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~  159 (407)
T cd01153          82 PLMYASGTQ--GAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG  159 (407)
T ss_pred             HHHHHHHHh--HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence            887655444  3345678889999999999999999999999999999999999999999998 5679999999999999


Q ss_pred             CCC----CEEEEEEEeCC----CCCeEEEEEeCCC-----CCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CC
Q 022844          210 TFA----DVLVIFARNTT----TNQINGYLVKKDA-----PGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VN  275 (291)
Q Consensus       210 ~~a----~~~lv~a~~~~----~~~~~~flV~~~~-----~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~  275 (291)
                      ..|    ++++|++++++    ..++++|+||++.     |||++.+.|+++|++++++++|.|+||+||   +||. +.
T Consensus       160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~  236 (407)
T cd01153         160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM  236 (407)
T ss_pred             CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence            876    58889998753    2368999999987     899999999999999999999999999999   7876 46


Q ss_pred             cHHHHHHHHHhhcc
Q 022844          276 SFQDTSKVRLLCSK  289 (291)
Q Consensus       276 g~~~~~~~~~~~r~  289 (291)
                      |+...+..++..|+
T Consensus       237 g~~~~~~~l~~~r~  250 (407)
T cd01153         237 GLAQMFAMMNGARL  250 (407)
T ss_pred             cHHHHHHHHHHHHH
Confidence            89888888888765

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>PLN02876 acyl-CoA dehydrogenase

Probab=100.00  E-value=2.4e-37  Score=310.12  Aligned_cols=238  Identities=19%  Similarity=0.220  Sum_probs=201.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccchHHHHHHhC-------CCC-hHHHHHHH-hCcccCC-cccC---------------
Q 022844           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP-FHVIPKLG-ALRVAGG-TIKG---------------  107 (291)
Q Consensus        53 ~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~-------~~p-~~~~~~l~-~~Gl~~~-~p~~---------------  107 (291)
                      +.+|++++++++++++|+++++.|...++++..       .+| .+.|+++. ++||+++ +|++               
T Consensus       400 ~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~  479 (822)
T PLN02876        400 FVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKH  479 (822)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccc
Confidence            558999999999999999999888766655322       377 58888885 9999999 9985               


Q ss_pred             ---------CCCCCccHHHHHHHHHHHHccCCcchhH-HHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCC
Q 022844          108 ---------YGCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP  177 (291)
Q Consensus       108 ---------~GG~g~~~~~~~~v~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp  177 (291)
                               +||.|+++.+++.++|++|+++.+...+ ..++...++..|..+|+++||++||+++++|++++|+++|||
T Consensus       480 ~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp  559 (822)
T PLN02876        480 MVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEP  559 (822)
T ss_pred             cccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCC
Confidence                     9999999999999999999987543221 112222334578899999999999999999999999999999


Q ss_pred             C-CCCCCCCCceEEEEeCCEEEEEeeeecccCC--CCCCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCc
Q 022844          178 A-YGSDASALNTTATKVEGGWILEGQKRWIGNS--TFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGL  250 (291)
Q Consensus       178 ~-~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~--~~a~~~lv~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~G~  250 (291)
                      + +|||...+.|+|++++|||+|||+|+|||++  ..||+++|+|++++    .+++++|+||.+.|||++.+.++++|+
T Consensus       560 ~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~  639 (822)
T PLN02876        560 QVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGF  639 (822)
T ss_pred             CccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccceecc
Confidence            7 7899999999999999999999999999999  46999999999742    246899999999999999999999999


Q ss_pred             ccc--ceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhccC
Q 022844          251 RIV--QNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSKF  290 (291)
Q Consensus       251 r~~--~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~~  290 (291)
                      +++  ++++|.|+||+||++++||+ ++|+..++..++.+|.+
T Consensus       640 r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~  682 (822)
T PLN02876        640 DDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLH  682 (822)
T ss_pred             CCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHH
Confidence            974  58899999999999999976 46898888888877653

>PLN02636 acyl-coenzyme A oxidase

Probab=100.00  E-value=2e-37  Score=302.33  Aligned_cols=236  Identities=20%  Similarity=0.291  Sum_probs=207.1

Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHhh--c-cchHHHHHHhCCCC-hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 022844           49 YQFDDLLTSEEQAVRMKVRECMEKE--I-APIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (291)
Q Consensus        49 ~~~~~~l~~~~~~l~~~~~~~~~~~--~-~p~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e  123 (291)
                      ..|...++++++++++.+++|+.+.  + .|....+++.+.++ .++++.+++.|++++ +|++      ++.++..+.|
T Consensus        55 ~~l~~~l~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e  128 (686)
T PLN02636         55 EKLSLYMRGKHRDIQEKIYEFFNSRPDLQTPVEISKDEHRELCMRQLTGLVREAGIRPMKYLVE------DPAKYFAITE  128 (686)
T ss_pred             HHHHhhcCCcHHHHHHHHHHHHHhCccccCCchhhHHHhhhhHHHHHHHHHHhcCccccccccC------CHHHHHHHHH
Confidence            3355567788889999999999877  3 56666667777888 889999999999998 7764      6778888999


Q ss_pred             HHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-
Q 022844          124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-  200 (291)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-  200 (291)
                      ++++.+.+++..+.+|..+....|..+||++||++|||++.+|+.++|||+|||++|||+..+.|+|+++  +|+|+|| 
T Consensus       129 ~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLnt  208 (686)
T PLN02636        129 AVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINT  208 (686)
T ss_pred             HHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECC
Confidence            9999998877767788777778899999999999999999999999999999999999999999999998  6789999 


Q ss_pred             ----eeeecccCCCC-CCEEEEEEEeC---------CCCCeEEEEEeCC-------CCCeEEeccCCccCccccceeeEE
Q 022844          201 ----GQKRWIGNSTF-ADVLVIFARNT---------TTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDIL  259 (291)
Q Consensus       201 ----G~K~~it~~~~-a~~~lv~a~~~---------~~~~~~~flV~~~-------~~Gv~~~~~~~~~G~r~~~~~~v~  259 (291)
                          |+|+||+|+.. ||+++|+|++.         .+.|+++|+||.+       .|||++.+...++|+++..++.|.
T Consensus       209 P~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~  288 (686)
T PLN02636        209 PNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALR  288 (686)
T ss_pred             CCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEE
Confidence                99999999975 99999999974         1358999999987       599999999999999999999999


Q ss_pred             EeeeEeCCCCCcCC-----------------CCcHHHHHHHHHhhccC
Q 022844          260 LKKVFVPDEDRLPG-----------------VNSFQDTSKVRLLCSKF  290 (291)
Q Consensus       260 f~~v~Vp~~~vlg~-----------------~~g~~~~~~~~~~~r~~  290 (291)
                      ||||+||.+++||+                 ++||+.++..|+.+|..
T Consensus       289 FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~  336 (686)
T PLN02636        289 FRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVG  336 (686)
T ss_pred             EeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHH
Confidence            99999999999952                 35899999999998864

>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C

Probab=100.00  E-value=1.4e-36  Score=280.46  Aligned_cols=204  Identities=21%  Similarity=0.288  Sum_probs=180.9

Q ss_pred             HHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHH
Q 022844           66 VRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM  144 (291)
Q Consensus        66 ~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~  144 (291)
                      ++++.. .+.+.+.++|+.+.+|.+.|+.|++.||+++ +|++|||.|+++.+.+.++|++++.|+++++.+..|.. +.
T Consensus         3 ~~~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~-~~   80 (377)
T cd01163           3 ARPLAA-RIAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFG-FV   80 (377)
T ss_pred             HHHHHH-HHhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-HH
Confidence            344343 4667778888999999999999999999999 99999999999999999999999999998877666643 34


Q ss_pred             HHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeCCC
Q 022844          145 LTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT  224 (291)
Q Consensus       145 ~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~~~  224 (291)
                      ..+..+|+++||++|++++++|++++ .++|||++|+ .....++++++++||+|||+|.|||++..||+++|.+++++ 
T Consensus        81 ~~l~~~g~~~~~~~~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~-  157 (377)
T cd01163          81 EALLLAGPEQFRKRWFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE-  157 (377)
T ss_pred             HHHHhcCcHHHHHHHHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC-
Confidence            68889999999999999999999655 5999999876 66777778888899999999999999999999999999754 


Q ss_pred             CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC
Q 022844          225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV  274 (291)
Q Consensus       225 ~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~  274 (291)
                      +++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||..
T Consensus       158 ~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~  207 (377)
T cd01163         158 GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRP  207 (377)
T ss_pred             CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCC
Confidence            46789999999999999999999999999999999999999999999874

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.

>PTZ00457 acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=7.1e-36  Score=281.77  Aligned_cols=233  Identities=23%  Similarity=0.289  Sum_probs=189.5

Q ss_pred             ccCCCCCccch-hccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHH
Q 022844            3 IHSSKHQDDVD-KNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEY   81 (291)
Q Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~   81 (291)
                      |.+++||-..+ .+.|++|.|+.+.++++++|...                  +++|+.+..+.   +++.    ...  
T Consensus         5 ~~~~~~~~~~~~sf~~~lF~g~~~~~~~~pyP~~~------------------~~~~~~~~~~~---~~~~----~~~--   57 (520)
T PTZ00457          5 FSSAPRQYVRHASYAAGLFNFKIVPEEMFPYPCRK------------------LDGDEAENLQS---LLEQ----IRS--   57 (520)
T ss_pred             cccCccccccCccHHHHhhCcccchhhcCCCCCCC------------------CCHHHHHHHHH---HHHH----HHh--
Confidence            56678876554 46788999999999999877221                  23344433332   2221    110  


Q ss_pred             HHhCCCChHHHHHHHhC-cccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHH
Q 022844           82 WEKAEFPFHVIPKLGAL-RVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKY  159 (291)
Q Consensus        82 d~~~~~p~~~~~~l~~~-Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~  159 (291)
                                  .++++ ||+++ +|++|||.|+++.+++.++|++++.+.+.+..+..|+.++...|..+|+++||++|
T Consensus        58 ------------~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~  125 (520)
T PTZ00457         58 ------------NDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKY  125 (520)
T ss_pred             ------------chHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence                        47799 99999 99999999999999999999999988776654445655666788899999999999


Q ss_pred             HHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeeeecccCCCCCCEEEEEEEeCC----------CCCeE
Q 022844          160 LPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTT----------TNQIN  228 (291)
Q Consensus       160 l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~it~~~~a~~~lv~a~~~~----------~~~~~  228 (291)
                      ||++++|+.++++|++| ++|||+..+.|+|+++ +|+|+|||+|.|+ |+..||+++|+|++++          .++++
T Consensus       126 Lp~lasGe~i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git  203 (520)
T PTZ00457        126 LTAMSDGTIMMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNS  203 (520)
T ss_pred             HHHHhCCCcEEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceE
Confidence            99999999999999988 8999999999999986 4579999999965 8999999999999741          13689


Q ss_pred             EEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhccC
Q 022844          229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSKF  290 (291)
Q Consensus       229 ~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~~  290 (291)
                      +|+||++.|||++..            ++|+||||  |.+++||+ ++||+.++..++.+|..
T Consensus       204 ~FlV~~dapGVtv~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~  252 (520)
T PTZ00457        204 FFICAKDAKGVSVNG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYL  252 (520)
T ss_pred             EEEEECCCCceEEec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHH
Confidence            999999999999863            69999997  99999997 47999999999988864

>PLN02312 acyl-CoA oxidase

Probab=100.00  E-value=3.8e-34  Score=278.88  Aligned_cols=207  Identities=22%  Similarity=0.299  Sum_probs=181.6

Q ss_pred             HHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHH
Q 022844           81 YWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKY  159 (291)
Q Consensus        81 ~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~  159 (291)
                      .++...++.+.++++.+.|+.++ +|++  |.+ ++...+.++|++++.+.+++..+.+|..+....|..+||++||++|
T Consensus       100 ~~~~~~~~~~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~  176 (680)
T PLN02312        100 MEQQREITMKRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKW  176 (680)
T ss_pred             HHHHHHhHHHHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHH
Confidence            34566788899999999999998 7874  333 5777889999999998887766777776777789999999999999


Q ss_pred             HHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eeeecccCC-CCCCEEEEEEEeCC---CCCeE
Q 022844          160 LPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS-TFADVLVIFARNTT---TNQIN  228 (291)
Q Consensus       160 l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~it~~-~~a~~~lv~a~~~~---~~~~~  228 (291)
                      ||++.+|+.++|+|+|||++|||+..+.|+|+++  +++|+||     |+|+||+|+ ..|++++|+||+..   +.|++
T Consensus       177 L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~  256 (680)
T PLN02312        177 LKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVH  256 (680)
T ss_pred             HHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeE
Confidence            9999999999999999999999999999999998  4679999     799999998 78999999999852   35799


Q ss_pred             EEEEe---CC---CCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-----------------CCcHHHHHHHHH
Q 022844          229 GYLVK---KD---APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-----------------VNSFQDTSKVRL  285 (291)
Q Consensus       229 ~flV~---~~---~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-----------------~~g~~~~~~~~~  285 (291)
                      +|+||   .+   .|||++.+...++|+++..++.|.||||+||.+++||+                 ++||..++..|+
T Consensus       257 ~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~  336 (680)
T PLN02312        257 AFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLT  336 (680)
T ss_pred             EEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHH
Confidence            99998   23   89999999999999999999999999999999999983                 458999899999


Q ss_pred             hhccC
Q 022844          286 LCSKF  290 (291)
Q Consensus       286 ~~r~~  290 (291)
                      .+|..
T Consensus       337 ~~R~~  341 (680)
T PLN02312        337 SGRVT  341 (680)
T ss_pred             HHHHH
Confidence            88864

>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product

Probab=100.00  E-value=2.5e-33  Score=261.91  Aligned_cols=215  Identities=19%  Similarity=0.203  Sum_probs=175.6

Q ss_pred             HHHHHhhccchHHHHHHhCC------CC---hHHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhHHH
Q 022844           67 RECMEKEIAPIMAEYWEKAE------FP---FHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFIL  137 (291)
Q Consensus        67 ~~~~~~~~~p~~~~~d~~~~------~p---~~~~~~l~~~Gl~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~  137 (291)
                      .++++++ .|...++|+.+.      +|   +++++++.+.||++++|+++|+.|  ......+.+.++..+......+.
T Consensus        38 ~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~~  114 (418)
T cd01154          38 ARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINIEDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPLT  114 (418)
T ss_pred             HHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccCCchhhCCCc--HHHHHHHHHHHHhcchhccCcHH
Confidence            3445555 677778887776      67   778999999999998555666544  22333455666666554444333


Q ss_pred             HhhHHHHHHHHhcCCHHHHHHHHHHHhcCC----ceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeeeecccCCCCC
Q 022844          138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLN----TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFA  212 (291)
Q Consensus       138 ~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~----~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~it~~~~a  212 (291)
                      .+. .++..|..+|+++|| +|||++++|+    +++|+++|||++|||+..++|+|+++ +|+|+|||+|+|+|++ .|
T Consensus       115 ~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~A  191 (418)
T cd01154         115 MTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LA  191 (418)
T ss_pred             HHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-cc
Confidence            443 566789999988865 6999999997    89999999999999999999999999 8899999999999999 99


Q ss_pred             CEEEEEEEeCC----CCCeEEEEEeCCCC-----CeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHH
Q 022844          213 DVLVIFARNTT----TNQINGYLVKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSK  282 (291)
Q Consensus       213 ~~~lv~a~~~~----~~~~~~flV~~~~~-----Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~  282 (291)
                      |+++|+||+++    .+++++|+||++.|     ||++.+.++++|+|++++++|.|+||   .+++||+ ++|++.++.
T Consensus       192 d~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~~g~G~~~~~~  268 (418)
T cd01154         192 DAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGDEGKGIYYILE  268 (418)
T ss_pred             CEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCc---CccccCCCCccHHHHHH
Confidence            99999999863    25799999999875     99999999999999999999999998   3789987 469999999


Q ss_pred             HHHhhccC
Q 022844          283 VRLLCSKF  290 (291)
Q Consensus       283 ~~~~~r~~  290 (291)
                      +++..|+.
T Consensus       269 ~l~~~R~~  276 (418)
T cd01154         269 MLNISRLD  276 (418)
T ss_pred             HHHHHHHH
Confidence            99998863

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.

>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]

Probab=99.97  E-value=7e-32  Score=227.02  Aligned_cols=193  Identities=21%  Similarity=0.252  Sum_probs=162.2

Q ss_pred             HHhCcccCC-cc---cCCCCCCccHHHHHHHHHHHHccCCcchhH-HHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCce
Q 022844           95 LGALRVAGG-TI---KGYGCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI  169 (291)
Q Consensus        95 l~~~Gl~~~-~p---~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~  169 (291)
                      .+..|++.+ +|   ..| |.|++.++++.++|.+|+.....-++ ........+.+|.+||+++||.+||-+++.|+..
T Consensus        36 aK~eGlWNLFlp~~~qky-g~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~ir  114 (392)
T KOG1469|consen   36 AKVEGLWNLFLPAVSQKY-GAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIR  114 (392)
T ss_pred             HHhcchHHhhhHHHHHhh-ccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCce
Confidence            346899999 77   345 56999999999999999965433322 2233446678999999999999999999999999


Q ss_pred             eEEEecCCC-CCCCCCCCceEEEEeCCEEEEEeeeecccCCC--CCCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEE
Q 022844          170 ACWALTEPA-YGSDASALNTTATKVEGGWILEGQKRWIGNST--FADVLVIFARNTTT-----NQINGYLVKKDAPGLTV  241 (291)
Q Consensus       170 ~~~a~tEp~-~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~--~a~~~lv~a~~~~~-----~~~~~flV~~~~~Gv~~  241 (291)
                      .|||+|||+ +.||+.++.+..+++++-|+|||.|||+||+.  .+.+.++..+++.+     ...|+.|||.++|||.+
T Consensus       115 ScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~TpGvki  194 (392)
T KOG1469|consen  115 SCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNTPGVKI  194 (392)
T ss_pred             eeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCCCCeeE
Confidence            999999999 69999999999999999999999999999985  46788888888643     45799999999999999


Q ss_pred             eccCCccCcccc--ceeeEEEeeeEeCCCCCc-CCCCcHHHHHHHHHhhc
Q 022844          242 TKIENKIGLRIV--QNGDILLKKVFVPDEDRL-PGVNSFQDTSKVRLLCS  288 (291)
Q Consensus       242 ~~~~~~~G~r~~--~~~~v~f~~v~Vp~~~vl-g~~~g~~~~~~~~~~~r  288 (291)
                      .++.+..|....  +..+|+|+||+||..|+| |++.||.+.+..+.-+|
T Consensus       195 iRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGR  244 (392)
T KOG1469|consen  195 IRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGR  244 (392)
T ss_pred             eeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcH
Confidence            999999998766  567999999999999877 77889987766555444

>cd01159 NcnH Naphthocyclinone hydroxylase

Probab=99.97  E-value=1.3e-30  Score=240.08  Aligned_cols=185  Identities=19%  Similarity=0.218  Sum_probs=157.7

Q ss_pred             hccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcC
Q 022844           73 EIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCG  151 (291)
Q Consensus        73 ~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~G  151 (291)
                      .+.+.+.++|+.+.+|.++|+.|++.||+++ +|++|||.|+++.+.+.++|+++++|++++++...++ .....+..++
T Consensus         9 ~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~~~~~   87 (370)
T cd01159           9 LIRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRMLAAFP   87 (370)
T ss_pred             HHHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHhCC
Confidence            4667888889999999999999999999999 9999999999999999999999999999887654443 4445777889


Q ss_pred             CHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeCC---CCCeE
Q 022844          152 SEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT---TNQIN  228 (291)
Q Consensus       152 t~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~~---~~~~~  228 (291)
                      +++|++.|++.. .+  ..+        |  ...+.|+|++++|||+|||+|.|||++..+|+++|.|++++   ..+++
T Consensus        88 ~~~~~~~~~~~~-~~--~~~--------g--~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~~~~~~~  154 (370)
T cd01159          88 PEAQEEVWGDGP-DT--LLA--------G--SYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPR  154 (370)
T ss_pred             HHHHHHHhCCCC-Cc--eEE--------e--eecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCCCCCcce
Confidence            999998887632 11  111        1  12356789999999999999999999999999999999753   34689


Q ss_pred             EEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC
Q 022844          229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG  273 (291)
Q Consensus       229 ~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~  273 (291)
                      +|+||++  ||++.+.|+++|+|++++++|.|+||+||++++|+.
T Consensus       155 ~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~  197 (370)
T cd01159         155 AFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTA  197 (370)
T ss_pred             EEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecc
Confidence            9999987  999999999999999999999999999999999974

Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.

>cd00567 ACAD Acyl-CoA dehydrogenase

Probab=99.97  E-value=7.5e-29  Score=224.35  Aligned_cols=189  Identities=34%  Similarity=0.517  Sum_probs=163.9

Q ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhHHH
Q 022844           58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFIL  137 (291)
Q Consensus        58 ~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~  137 (291)
                      +++++++.+++|+.+++.+.....++   .+...|+.+++.|++                                    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~------------------------------------   42 (327)
T cd00567           2 EQRELRDSAREFAAEELEPYARERRE---TPEEPWELLAELGLL------------------------------------   42 (327)
T ss_pred             hHHHHHHHHHHHHHHhccccHHhHHh---hCCCCHHHHHHHHHH------------------------------------
Confidence            57889999999999999887775444   444557777777776                                    


Q ss_pred             HhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEE
Q 022844          138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI  217 (291)
Q Consensus       138 ~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv  217 (291)
                          ++..+|..+|+++||++||+.+.+|+.++++++|||..|||...+.++++++++||+|||+|.|+|++..||+++|
T Consensus        43 ----~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv  118 (327)
T cd00567          43 ----LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIV  118 (327)
T ss_pred             ----hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEE
Confidence                2335677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhcc
Q 022844          218 FARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCSK  289 (291)
Q Consensus       218 ~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r~  289 (291)
                      .+++++    ..++.+|+||++.|||++.+.|.++|+++++++++.|+||+||.+++|+.. .|+......+...|+
T Consensus       119 ~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~  195 (327)
T cd00567         119 LARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRL  195 (327)
T ss_pred             EEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHH
Confidence            999753    246889999999999999999999999999999999999999999999874 577666666665553

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob

>PRK11561 isovaleryl CoA dehydrogenase; Provisional

Probab=99.96  E-value=1.5e-28  Score=233.48  Aligned_cols=192  Identities=17%  Similarity=0.148  Sum_probs=151.0

Q ss_pred             hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 022844           89 FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN  167 (291)
Q Consensus        89 ~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~  167 (291)
                      +++++.+.+.||.++ .++++| .+  ......+.+.+-..+-+...+.. ....++..+..+|+++||++|||++++|+
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~g~~cp~-~mT~~a~~~l~~~~~e~~~~~lp~l~sg~  164 (538)
T PRK11561         89 HLLMQGLCANRVHNLAWEEDAR-SG--AFVARAARFMLHAQVEAGTLCPI-TMTFAATPLLLQMLPAPFQDWLTPLLSDR  164 (538)
T ss_pred             HHHHHHHHHcCCccCCCCCccC-ch--HHHHHHHHHHHHhhhhHHhhchH-HHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence            356666778999887 555554 22  22223333444332222222222 11234456677789999999999999997


Q ss_pred             -------------ceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeeeecccCCCCCCEEEEEEEeCCCCCeEEEEEe
Q 022844          168 -------------TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVK  233 (291)
Q Consensus       168 -------------~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~it~~~~a~~~lv~a~~~~~~~~~~flV~  233 (291)
                                   +++++++|||++|||+..+.|+|++. +|+|+|||+|+||| +..||+++|+||++  +|+++|+||
T Consensus       165 ~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~--~Gls~FlVp  241 (538)
T PRK11561        165 YDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK--GGLSCFFVP  241 (538)
T ss_pred             cccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC--CceEEEEEE
Confidence                         45699999999999999999999994 66799999999999 68899999999986  589999999


Q ss_pred             CCCC-----CeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhccC
Q 022844          234 KDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSKF  290 (291)
Q Consensus       234 ~~~~-----Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~~  290 (291)
                      ++.|     ||++.+.++++|+|++++++|.|+||   .+++||+ ++|++.++.++|.+|+.
T Consensus       242 ~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~Rl~  301 (538)
T PRK11561        242 RFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMTRFD  301 (538)
T ss_pred             CCCCCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHHHHH
Confidence            9988     79999999999999999999999999   4789997 46999999999999864

>cd01150 AXO Peroxisomal acyl-CoA oxidase

Probab=99.96  E-value=7.7e-29  Score=240.57  Aligned_cols=177  Identities=26%  Similarity=0.330  Sum_probs=155.9

Q ss_pred             cHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe
Q 022844          114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV  193 (291)
Q Consensus       114 ~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~  193 (291)
                      ++.+...+.|++++.+++++..+.+|..+....|..+||++|+++|||++.+|+.++|+|+|||++|||+..+.|+|+++
T Consensus        80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d  159 (610)
T cd01150          80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD  159 (610)
T ss_pred             CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence            45677888999999888876656677667777899999999999999999999999999999999999999999999998


Q ss_pred             C--CEEEEE-----eeeecccCCC-CCCEEEEEEEeC---CCCCeEEEEEeCC-------CCCeEEeccCCccCccccce
Q 022844          194 E--GGWILE-----GQKRWIGNST-FADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQN  255 (291)
Q Consensus       194 ~--~g~~Ln-----G~K~~it~~~-~a~~~lv~a~~~---~~~~~~~flV~~~-------~~Gv~~~~~~~~~G~r~~~~  255 (291)
                      +  ++|+||     |+|+||+|+. .|++.+|+|++.   ++.|+++|+||..       .|||++.+...++|+++..+
T Consensus       160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn  239 (610)
T cd01150         160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN  239 (610)
T ss_pred             CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence            8  889999     9999999975 599999999973   2358999999963       39999999999999999999


Q ss_pred             eeEEEeeeEeCCCCCcCC-----------------CCcHHHHHHHHHhhccC
Q 022844          256 GDILLKKVFVPDEDRLPG-----------------VNSFQDTSKVRLLCSKF  290 (291)
Q Consensus       256 ~~v~f~~v~Vp~~~vlg~-----------------~~g~~~~~~~~~~~r~~  290 (291)
                      +.|.|+||+||.+++||+                 +.|+..++..++.+|+.
T Consensus       240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~  291 (610)
T cd01150         240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVG  291 (610)
T ss_pred             EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHH
Confidence            999999999999999985                 24788888888877753

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.

>PTZ00460 acyl-CoA dehydrogenase; Provisional

Probab=99.95  E-value=2.2e-27  Score=230.56  Aligned_cols=154  Identities=22%  Similarity=0.391  Sum_probs=133.6

Q ss_pred             HHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eeeecccC
Q 022844          136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGN  208 (291)
Q Consensus       136 ~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~it~  208 (291)
                      +.+|..+....|..+||++||++|||++.+|+.++|+|+|||++|||+..+.|+|+++  +++|+||     |+|+||+|
T Consensus        95 ~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~  174 (646)
T PTZ00460         95 STVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGE  174 (646)
T ss_pred             EEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCC
Confidence            3455555556788999999999999999999999999999999999999999999985  5779998     99999997


Q ss_pred             -CCCCCEEEEEEEeC---CCCCeEEEEEeC-------CCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC----
Q 022844          209 -STFADVLVIFARNT---TTNQINGYLVKK-------DAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG----  273 (291)
Q Consensus       209 -~~~a~~~lv~a~~~---~~~~~~~flV~~-------~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~----  273 (291)
                       +..|++++|+||+.   .+.|+++|+||.       ..|||++.+...++|+++..++.|.|+||+||.+++||+    
T Consensus       175 ~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~v  254 (646)
T PTZ00460        175 LGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIKV  254 (646)
T ss_pred             CCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhCCccccc
Confidence             68899999999984   235899999993       249999999999999999999999999999999999985    


Q ss_pred             ---CC----c-HHHHHHHHHhhcc
Q 022844          274 ---VN----S-FQDTSKVRLLCSK  289 (291)
Q Consensus       274 ---~~----g-~~~~~~~~~~~r~  289 (291)
                         +.    | ++..+..+...|.
T Consensus       255 ~~~G~~~~~g~~~~~~~~l~~~R~  278 (646)
T PTZ00460        255 SEDGQVERQGNPKVSYASMMYMRN  278 (646)
T ss_pred             CCCCccccCCcHHHHHHHHHHHHH
Confidence               21    4 6777777777664

>PLN02443 acyl-coenzyme A oxidase

Probab=99.93  E-value=3.1e-25  Score=216.04  Aligned_cols=136  Identities=31%  Similarity=0.502  Sum_probs=121.7

Q ss_pred             HhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eeeecccCC-
Q 022844          138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS-  209 (291)
Q Consensus       138 ~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~it~~-  209 (291)
                      +|..+....|..+||++||++|||++.+|+.++|+|+|||++|||+..+.|+|+++  +++|+||     |+|+||+|+ 
T Consensus       101 ~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~~  180 (664)
T PLN02443        101 LHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLG  180 (664)
T ss_pred             ehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCCc
Confidence            45445556788899999999999999999999999999999999999999999998  5779998     999999997 


Q ss_pred             CCCCEEEEEEEeC---CCCCeEEEEEeCC-------CCCeEEeccCCccC---ccccceeeEEEeeeEeCCCCCcCC
Q 022844          210 TFADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPG  273 (291)
Q Consensus       210 ~~a~~~lv~a~~~---~~~~~~~flV~~~-------~~Gv~~~~~~~~~G---~r~~~~~~v~f~~v~Vp~~~vlg~  273 (291)
                      ..|++++|+|++.   .+.|+++|+||.+       .|||++.+...++|   .++..++.|.|+||+||.+++||+
T Consensus       181 ~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~  257 (664)
T PLN02443        181 KVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMR  257 (664)
T ss_pred             ccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCc
Confidence            6899999999973   2358999999975       79999999999999   556889999999999999999975

>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1

Probab=99.84  E-value=8.1e-21  Score=145.54  Aligned_cols=112  Identities=45%  Similarity=0.525  Sum_probs=104.1

Q ss_pred             CHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchh
Q 022844           56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCST  134 (291)
Q Consensus        56 ~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~  134 (291)
                      |++++++++.+++|+++++.|...++|+.+.+|+++|+++++.||+++ +|+++||.|+++.+.+.+++++++++.++++
T Consensus         1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~   80 (113)
T PF02771_consen    1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAF   80 (113)
T ss_dssp             SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccc
Confidence            578999999999999999999999998888999999999999999999 9999999999999999999999999999888


Q ss_pred             HHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 022844          135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN  167 (291)
Q Consensus       135 ~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~  167 (291)
                      .+.+|+++++..|..+|+++||++|||++++|+
T Consensus        81 ~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge  113 (113)
T PF02771_consen   81 ALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE  113 (113)
T ss_dssp             HHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred             hhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence            777887677789999999999999999999996

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....

>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.79  E-value=4.8e-19  Score=162.34  Aligned_cols=187  Identities=25%  Similarity=0.362  Sum_probs=155.5

Q ss_pred             HhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHH
Q 022844           83 EKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP  161 (291)
Q Consensus        83 ~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~  161 (291)
                      +.+++-..-|..|.+.|.+.. ..+..   --...-...+.|.++..+.+++.-+++|..+....+..+||+..++ |+.
T Consensus        74 ~qRel~~~r~~~l~~~gv~~~~~~~~~---~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~  149 (661)
T KOG0135|consen   74 EQRELCMKRIKRLVELGVFKFWLVEDG---PEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQ  149 (661)
T ss_pred             HHHHHHHHHHHHHHHhccCcceeecCc---hHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHh
Confidence            333444455667777766644 22221   1123456778999999999999999999888888999999999998 999


Q ss_pred             HHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eeeecccCC-CCCCEEEEEEEe--C-CCCCeEEE
Q 022844          162 SLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS-TFADVLVIFARN--T-TTNQINGY  230 (291)
Q Consensus       162 ~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~it~~-~~a~~~lv~a~~--~-~~~~~~~f  230 (291)
                      .+-.-+.++|||+||-++||+...++|+|+.+  .+.|+||     ..|+||.|. ..|++.+|+|+.  + .+.|+..|
T Consensus       150 ~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~F  229 (661)
T KOG0135|consen  150 KTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGF  229 (661)
T ss_pred             hhhcceeeeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeE
Confidence            99999999999999999999999999999987  5669998     679999986 578999999986  2 35789999


Q ss_pred             EEeCC-------CCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC
Q 022844          231 LVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG  273 (291)
Q Consensus       231 lV~~~-------~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~  273 (291)
                      +|+..       -|||+|...-+|.|+.|..++-+.|+||+||.+++|.+
T Consensus       230 iiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr  279 (661)
T KOG0135|consen  230 IIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNR  279 (661)
T ss_pred             EEEeecccccCCCCCceecccccccccccccCceEEEecccCchHHHhhh
Confidence            99953       57999999999999999999999999999999999954

>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1

Probab=99.66  E-value=2.2e-16  Score=103.64  Aligned_cols=52  Identities=44%  Similarity=0.742  Sum_probs=47.3

Q ss_pred             EEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeC
Q 022844          171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT  222 (291)
Q Consensus       171 ~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~  222 (291)
                      |+|+|||++|+|+..++|+|++++++|+|||+|+||+++..||+++|+||++
T Consensus         1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d   52 (52)
T PF02770_consen    1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD   52 (52)
T ss_dssp             EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred             CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence            6899999999999999999999999999999999999999999999999973

3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....

>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=99.57  E-value=3.2e-14  Score=134.38  Aligned_cols=135  Identities=22%  Similarity=0.281  Sum_probs=104.1

Q ss_pred             HHHhcCCH--HHHHHHHHHHhcCCceeEEEecCCCC-CC-------CCCCCceEEEEeCCEEEEEeeeecccCCCCCCEE
Q 022844          146 TIALCGSE--EQKQKYLPSLAQLNTIACWALTEPAY-GS-------DASALNTTATKVEGGWILEGQKRWIGNSTFADVL  215 (291)
Q Consensus       146 ~l~~~Gt~--~qk~~~l~~l~~G~~~~~~a~tEp~~-Gs-------d~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~  215 (291)
                      .+..++++  +-..+|+..+....+..+.+++.|.. -|       |+...--..+++++||+|||.|.|+|++ .||++
T Consensus       117 ~~~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~  195 (477)
T TIGR02309       117 YFGKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEI  195 (477)
T ss_pred             HHhhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceE
Confidence            33445543  34568999999999999999999873 12       2221112334678899999999999997 99999


Q ss_pred             EEEEEeCCC----CC--eEEEEEeCCCCCeEEeccCCccCcccc-----------ceeeEEEeeeEeCCCCC--cCCC--
Q 022844          216 VIFARNTTT----NQ--INGYLVKKDAPGLTVTKIENKIGLRIV-----------QNGDILLKKVFVPDEDR--LPGV--  274 (291)
Q Consensus       216 lv~a~~~~~----~~--~~~flV~~~~~Gv~~~~~~~~~G~r~~-----------~~~~v~f~~v~Vp~~~v--lg~~--  274 (291)
                      +|+++++..    ++  .++|+||.++|||++.....++|.++.           ..+.|.||||+||.|+|  +|+.  
T Consensus       196 ~V~~~~~~~~~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~  275 (477)
T TIGR02309       196 LIFPSTVLKAGAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVEL  275 (477)
T ss_pred             EEeccCCCCCccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHH
Confidence            999987531    23  689999999999999999999999876           77999999999999999  8874  


Q ss_pred             --CcHHHHH
Q 022844          275 --NSFQDTS  281 (291)
Q Consensus       275 --~g~~~~~  281 (291)
                        .||....
T Consensus       276 a~~~f~~~~  284 (477)
T TIGR02309       276 CNNAYAATG  284 (477)
T ss_pred             HHHHHHHHH
Confidence              3554443

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]

Probab=99.55  E-value=6e-14  Score=131.71  Aligned_cols=137  Identities=27%  Similarity=0.405  Sum_probs=119.6

Q ss_pred             HHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCC--EEEEE-----eeeecccC
Q 022844          136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG--GWILE-----GQKRWIGN  208 (291)
Q Consensus       136 ~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~--g~~Ln-----G~K~~it~  208 (291)
                      +.+|..+-...|..-||+||.++||++....++++|+|-||-++|+++..+.|+|+.+..  .|+||     ..|||..+
T Consensus       111 l~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGg  190 (670)
T KOG0136|consen  111 LALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWWPGG  190 (670)
T ss_pred             hhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecccCCc
Confidence            345655666788889999999999999999999999999999999999999999998765  48876     89999976


Q ss_pred             -CCCCCEEEEEEEe---CCCCCeEEEEEeCC-------CCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcC
Q 022844          209 -STFADVLVIFARN---TTTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP  272 (291)
Q Consensus       209 -~~~a~~~lv~a~~---~~~~~~~~flV~~~-------~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg  272 (291)
                       |..+.+.+|.|+.   +..-|+..|+||..       -|||+++++-.|||..+..++-+.|+||+||.+++|-
T Consensus       191 LG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLm  265 (670)
T KOG0136|consen  191 LGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLM  265 (670)
T ss_pred             cccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhh
Confidence             4568899999986   23467889999963       5799999999999999999999999999999999884

>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []

Probab=98.67  E-value=2.1e-07  Score=81.11  Aligned_cols=118  Identities=19%  Similarity=0.329  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHhcCCceeEEEecCCCC--CCCC----CCCceEE-EEeCCEEEEEeeeecccCCCCCCEEEEEEEeC----
Q 022844          154 EQKQKYLPSLAQLNTIACWALTEPAY--GSDA----SALNTTA-TKVEGGWILEGQKRWIGNSTFADVLVIFARNT----  222 (291)
Q Consensus       154 ~qk~~~l~~l~~G~~~~~~a~tEp~~--Gsd~----~~~~t~a-~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~----  222 (291)
                      +-..+|+..+....+..+.+++.|..  +..+    ..+-.+. .++++|.+|+|.|...|+++.+|.++|+-...    
T Consensus       123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~  202 (264)
T PF11794_consen  123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG  202 (264)
T ss_dssp             HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred             HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence            44567889999999999999999973  2222    1123333 45789999999999999999999999875432    


Q ss_pred             CCCCeEEEEEeCCCCCeEEeccCCccCccc------------cceeeEEEeeeEeCCCCCc
Q 022844          223 TTNQINGYLVKKDAPGLTVTKIENKIGLRI------------VQNGDILLKKVFVPDEDRL  271 (291)
Q Consensus       223 ~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~------------~~~~~v~f~~v~Vp~~~vl  271 (291)
                      +.+--..|.||.++||+++.-.......+.            -.-+-|.||||+||.|+|+
T Consensus       203 d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF  263 (264)
T PF11794_consen  203 DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF  263 (264)
T ss_dssp             CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred             CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence            122256799999999999865443333221            1246899999999999874

The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.

>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.31  E-value=3.3e-06  Score=78.12  Aligned_cols=117  Identities=18%  Similarity=0.324  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhcCCceeEEEecCCCCC-CC-CCC-----CceEE-EEeCCEEEEEeeeecccCCCCCCEEEEE-EEe--CC
Q 022844          155 QKQKYLPSLAQLNTIACWALTEPAYG-SD-ASA-----LNTTA-TKVEGGWILEGQKRWIGNSTFADVLVIF-ARN--TT  223 (291)
Q Consensus       155 qk~~~l~~l~~G~~~~~~a~tEp~~G-sd-~~~-----~~t~a-~~~~~g~~LnG~K~~it~~~~a~~~lv~-a~~--~~  223 (291)
                      --.+|+..+....+..+-|+|.|... |- +..     +-.+. ..+++|.+|.|.|..+|++..+|.++|+ .+.  ++
T Consensus       132 n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~~  211 (493)
T COG2368         132 NAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQED  211 (493)
T ss_pred             HHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCCC
Confidence            44589999999999899999998731 11 111     22222 3568999999999999999999998887 333  22


Q ss_pred             CCC-eEEEEEeCCCCCeEEeccCC-ccCc--ccc------------ceeeEEEeeeEeCCCCCc
Q 022844          224 TNQ-INGYLVKKDAPGLTVTKIEN-KIGL--RIV------------QNGDILLKKVFVPDEDRL  271 (291)
Q Consensus       224 ~~~-~~~flV~~~~~Gv~~~~~~~-~~G~--r~~------------~~~~v~f~~v~Vp~~~vl  271 (291)
                      +.. -..|.+|.++|||.+.-... ..+.  .+.            ..+-|.||||+||-|+|+
T Consensus       212 d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf  275 (493)
T COG2368         212 DKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVF  275 (493)
T ss_pred             CCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhhee
Confidence            223 45799999999988754331 1111  111            234599999999999988

>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=98.30  E-value=3.3e-06  Score=80.35  Aligned_cols=118  Identities=15%  Similarity=0.249  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHhcCCceeEEEecCCCC-CC-CC---CCCc-eEEEEeCCEEEEEeeeecccCCCCCCEEEE-EEEe---CC
Q 022844          154 EQKQKYLPSLAQLNTIACWALTEPAY-GS-DA---SALN-TTATKVEGGWILEGQKRWIGNSTFADVLVI-FARN---TT  223 (291)
Q Consensus       154 ~qk~~~l~~l~~G~~~~~~a~tEp~~-Gs-d~---~~~~-t~a~~~~~g~~LnG~K~~it~~~~a~~~lv-~a~~---~~  223 (291)
                      +-..+|+..+....+..+.+++.|.. -| .+   ..+- -..+++++|.+|+|.|...|++..+|.++| ....   .+
T Consensus       136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~  215 (519)
T TIGR02310       136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD  215 (519)
T ss_pred             HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence            34568899999999999999999873 11 11   1112 233457889999999999999999998888 4332   12


Q ss_pred             CCC-eEEEEEeCCCCCeEEeccCCcc------C--cc-------ccceeeEEEeeeEeCCCCCc
Q 022844          224 TNQ-INGYLVKKDAPGLTVTKIENKI------G--LR-------IVQNGDILLKKVFVPDEDRL  271 (291)
Q Consensus       224 ~~~-~~~flV~~~~~Gv~~~~~~~~~------G--~r-------~~~~~~v~f~~v~Vp~~~vl  271 (291)
                      ++. -..|.||.++|||++.-.....      +  ..       .-.-+-|.||||+||.|+|+
T Consensus       216 d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF  279 (519)
T TIGR02310       216 NDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVL  279 (519)
T ss_pred             CCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHce
Confidence            233 4569999999999987433211      0  00       11346799999999999998

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A

Probab=91.40  E-value=0.2  Score=38.62  Aligned_cols=32  Identities=31%  Similarity=0.405  Sum_probs=26.0

Q ss_pred             HHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCc
Q 022844          137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNT  168 (291)
Q Consensus       137 ~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~  168 (291)
                      .+|.++-...|...||+||+++|||...+.+.
T Consensus        93 ~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I  124 (125)
T PF14749_consen   93 GLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI  124 (125)
T ss_dssp             HHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence            36766677899999999999999999887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	291
2ix5_A	436	Short Chain Specific Acyl-Coa Oxidase From Arabidop		1e-137
2ix6_A	449	Short Chain Specific Acyl-Coa Oxidase From Arabidop		1e-136
3sf6_A	403	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		2e-42
2eba_A	385	Crystal Structure Of The Putative Glutaryl-coa Dehy		1e-40
3swo_A	399	Crystal Structure Of A Glutaryl-Coa Dehydrogenase F		2e-37
1sir_A	394	The Crystal Structure And Mechanism Of Human Glutar		1e-35
2r0m_A	394	The Effect Of A Glu370asp Mutation In Glutaryl-Coa		1e-35
1siq_A	392	The Crystal Structure And Mechanism Of Human Glutar		1e-35
3eom_A	396	2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy		1e-35
3gqt_A	399	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		1e-35
3d6b_A	395	2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena		2e-35
1ws9_A	387	Crystal Structure Of Project Id Tt0172 From Thermus		6e-31
1jqi_A	388	Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd		9e-28
2dvl_A	372	Crystal Structure Of Project Tt0160 From Thermus Th		2e-27
3pfd_A	393	Crystal Structure Of An Acyl-Coa Dehydrogenase From		6e-26
2vig_A	391	Crystal Structure Of Human Short-Chain Acyl Coa Deh		8e-26
3owa_A	597	Crystal Structure Of Acyl-Coa Dehydrogenase Complex		3e-24
2jif_A	404	Structure Of Human Short-Branched Chain Acyl-Coa De		6e-24
1ukw_A	379	Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog		2e-23
3nf4_A	387	Crystal Structure Of Acyl-Coa Dehydrogenase From My		1e-22
2z1q_A	577	Crystal Structure Of Acyl Coa Dehydrogenase Length		4e-22
1ivh_A	394	Structure Of Human Isovaleryl-coa Dehydrogenase At		4e-20
3mpi_A	397	Structure Of The Glutaryl-Coenzyme A Dehydrogenase		6e-20
1rx0_A	393	Crystal Structure Of Isobutyryl-Coa Dehydrogenase C		2e-19
1udy_A	396	Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta		2e-19
2a1t_A	421	Structure Of The Human Mcad:etf E165betaa Complex L		7e-19
1ege_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		8e-19
2uxw_A	607	Crystal Structure Of Human Very Long Chain Acyl-coa		1e-18
3b96_A	587	Structural Basis For Substrate Fatty-Acyl Chain Spe		1e-18
1egd_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		1e-18
1buc_A	383	Three-Dimensional Structure Of Butyryl-Coa Dehydrog		1e-18
3mdd_A	385	Crystal Structures Of Medium Chain Acyl-Coa Dehydro		2e-18
2pg0_A	385	Crystal Structure Of Acyl-Coa Dehydrogenase From Ge		7e-16
3r7k_A	403	Crystal Structure Of A Probable Acyl Coa Dehydrogen		2e-11
3oib_A	403	Crystal Structure Of A Putative Acyl-Coa Dehydrogen		2e-08
1r2j_A	366	Fkbi For Biosynthesis Of Methoxymalonyl Extender Un		1e-07
2fon_A	683	X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid		2e-07
2wbi_A	428	Crystal Structure Of Human Acyl-Coa Dehydrogenase 1		7e-07
1w07_A	659	Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 65		5e-06
4doy_A	437	Crystal Structure Of Dibenzothiophene Desulfurizati		4e-05
4hr3_A	415	Structure Of A Putative Acyl-Coa Dehydrogenase From		5e-04

>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436

Iteration: 1
 Score =  483 bits (1242), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 225/283 (79%), Positives = 249/283 (87%)
Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60
Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120
Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180
Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240
Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
            TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKV
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKV 283

>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449

Iteration: 1
 Score =  482 bits (1240), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 225/283 (79%), Positives = 249/283 (87%)
Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60
Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120
Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180
Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240
Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
            TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKV
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKV 283

>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403

Iteration: 1
 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/234 (38%), Positives = 132/234 (56%), Gaps = 3/234 (1%)
Query: 45  ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIP-KLGALRVAGG 103
           A D    + +L++EE+ +R  VR  +++ I P +A ++E  E P   +  +LG L + G 
Sbjct: 20  ADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGM 79
Query: 104 TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL 163
            +KGYGC G S     +A  E+   D+   + + V  SLAM  I   GS+EQK ++LP +
Sbjct: 80  HLKGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDM 139
Query: 164 AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT 223
           A  + I C+ LTEP +GSD + + T AT+    WIL G K WI N + ADV V++AR  T
Sbjct: 140 ASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWAR--T 197
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
              I G++V  D PG T   I++K+ LR     +++L  V +PD  RLPG  S 
Sbjct: 198 DEGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATSL 251

>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385

Iteration: 1
 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 129/228 (56%), Gaps = 3/228 (1%)
Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
           D+Y  +DLLT EE+ V+   R  +EKE  P + ++WE+  FP H+IP+   L   G T+ 
Sbjct: 3   DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLP 62
Query: 107 -GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
             YG  G S     +   E+ RVD+   +F+ V SSL M  I   GSEEQK+++LP LA+
Sbjct: 63  PEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLAR 122
Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFARNTTT 224
              + C+ LTEP  GSD      T  + EG  W+L G K WI N   A + VI+A++   
Sbjct: 123 GEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKD-EG 181
Query: 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP 272
            ++ G+LV  D PG    +++ K+ LR     +++L++V VP+  RLP
Sbjct: 182 GEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLP 229

>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 126/236 (53%), Gaps = 2/236 (0%)
Query: 37  PASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLG 96
           P+ K      + +  D LL  +E+ +   VR+ ++  + P +  ++E A  P  +  + G
Sbjct: 8   PSKKSTYAPLELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFG 67
Query: 97  ALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQK 156
            L V G  ++GYGC G +     +A  E+   D+   +F+ V  SL+M +I   GSEEQK
Sbjct: 68  NLGVLGMHLQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQK 127
Query: 157 QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216
            ++LP LA  + I C+ LTEP +GS+ + + T A +    WIL G K WI N   ADV  
Sbjct: 128 NEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVAT 187
Query: 217 IFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP 272
           ++A+  T + I G+LV  D PG T  +I  K+ LR     +++L  V +P   +LP
Sbjct: 188 VWAQ--TDDGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLP 241

>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 3/229 (1%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 12  LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 71
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + 
Sbjct: 72  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 131
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
           C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR      I 
Sbjct: 132 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIR 190
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
           G+L++K   GL+  +I+ K  LR    G I++  V VP+E+ LPG +S 
Sbjct: 191 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 239

>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 3/229 (1%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 12  LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 71
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + 
Sbjct: 72  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 131
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
           C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR      I 
Sbjct: 132 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIR 190
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
           G+L++K   GL+  +I+ K  LR    G I++  V VP+E+ LPG +S 
Sbjct: 191 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 239

>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 3/229 (1%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 10  LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 69
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + 
Sbjct: 70  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 129
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
           C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR      I 
Sbjct: 130 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIR 188
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
           G+L++K   GL+  +I+ K  LR    G I++  V VP+E+ LPG +S 
Sbjct: 189 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 237

>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 126/231 (54%), Gaps = 3/231 (1%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
            D  L  +E+ VR       + ++AP + E +        +  ++G + + G TI + YG
Sbjct: 15  LDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYG 74
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
            PG       +   E+ RVD+   + + V SSL M+ I   GS+ QK+KYLP LA    I
Sbjct: 75  GPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWI 134
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NTTTNQI 227
            C+ LTEP +GSD  ++ T A KV GG+ L G K WI NS  ADV V++A+      ++I
Sbjct: 135 GCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDEI 194
Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
            G++++K   GL+   I  K+GLR    G+I+L + FVP+E+ LP V   +
Sbjct: 195 RGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLR 245

>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 126/231 (54%), Gaps = 3/231 (1%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
            D  L  +E+ VR       + ++AP + E +        +  ++G + + G TI + YG
Sbjct: 18  LDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYG 77
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
            PG       +   E+ RVD+   + + V SSL M+ I   GS+ QK+KYLP LA    I
Sbjct: 78  GPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWI 137
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NTTTNQI 227
            C+ LTEP +GSD  ++ T A KV GG+ L G K WI NS  ADV V++A+      ++I
Sbjct: 138 GCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDEI 197
Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
            G++++K   GL+   I  K+GLR    G+I+L + FVP+E+ LP V   +
Sbjct: 198 RGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLR 248

>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395

Iteration: 1
 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 126/231 (54%), Gaps = 3/231 (1%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
            D  L  +E+ VR       + ++AP + E +        +  ++G + + G TI + YG
Sbjct: 14  LDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYG 73
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
            PG       +   E+ RVD+   + + V SSL M+ I   GS+ QK+KYLP LA    I
Sbjct: 74  GPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWI 133
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NTTTNQI 227
            C+ LTEP +GSD  ++ T A KV GG+ L G K WI NS  ADV V++A+      ++I
Sbjct: 134 GCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDEI 193
Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
            G++++K   GL+   I  K+GLR    G+I+L + FVP+E+ LP V   +
Sbjct: 194 RGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLR 244

>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387

Iteration: 1
 Score =  130 bits (328), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 113/220 (51%), Gaps = 8/220 (3%)
Query: 57  SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSV 115
           +EE+ V    RE ++ E+AP  AE      FP+ ++ KL    V G  + + YG  G S 
Sbjct: 9   AEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLST 68
Query: 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175
              A  +  IA  D + +  +  H+SLA   I L GSE QK+ +LP LA    +  W LT
Sbjct: 69  RLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLT 128
Query: 176 EPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR-------NTTTNQIN 228
           EP  GSDA+AL T A KVEGGW L G K++I   + A V V+ AR             I+
Sbjct: 129 EPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGIS 188
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDE 268
            +   +   GL V + E K+GL       ++L+ +FVP+E
Sbjct: 189 AFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEE 228

>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388

Iteration: 1
 Score =  120 bits (301), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 6/227 (2%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L    Q +R   R+  EKE+ PI A+  ++  FP   + K+G L +    + +     G 
Sbjct: 10  LPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGL 69
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                +IA+ EI+R  AS    + V++SL +  I   GS +QKQ+++      + I C+A
Sbjct: 70  DYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFA 129
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ---INGY 230
           L+EP  GSDA A +TTA +    W+L G K WI NS  A   V+FA    + Q   I+ +
Sbjct: 130 LSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAF 189
Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL--PGVN 275
           LV    PGLT+ K E+K+G+R     +++ +   +P E+ L  PG+ 
Sbjct: 190 LVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMG 236

>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 121/218 (55%), Gaps = 3/218 (1%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT E++ V   VR    + + P+  EY  KAE+P+  +  L  L + G T  + +G  G 
Sbjct: 3   LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGL 62
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                A+A+ E+A  D S +  + V S L    +   GSE QK++YL  LA+   I  + 
Sbjct: 63  DSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFC 122
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVK 233
           LTEP  GSDA +L   A +V+GG++L G K WI ++  A + V+ AR  T   I+ +LV+
Sbjct: 123 LTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMAR--TEKGISAFLVE 180
Query: 234 KDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           K  PGL+  + E K+GL      ++ L++VFVP+E+ L
Sbjct: 181 KGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLL 218

>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393

Iteration: 1
 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 115/226 (50%), Gaps = 12/226 (5%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI----KGYGC 110
           L  E  A+R  +R   EKEIAP  AE  EKA FP      L AL  +G +     + YG 
Sbjct: 19  LPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEA---LAALNSSGFSAIHVPEEYGG 75
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G       I I E+ARVD S S    V+  L  + + L GSEE K++ LP++A    +A
Sbjct: 76  QGADSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMA 134
Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI---GNSTFADVLVIFARNTTTNQI 227
            +AL+E   GSDA+++ T A      WIL G K WI   G ST+  V+ +   +   N I
Sbjct: 135 SYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGI 194
Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
           + ++V KD  G TV   E K+G++     ++  +   +P  DR+ G
Sbjct: 195 SAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPG-DRIIG 239

>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391

Iteration: 1
 Score =  114 bits (284), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 6/227 (2%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L    Q +    R+  EKE+ PI A+  ++  FP   + K+G L +    + +  G  G 
Sbjct: 6   LPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGL 65
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                AIA+ EI+R  AS    + V++SL +  I   GS+EQKQ ++      + I C+A
Sbjct: 66  DYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFA 125
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQINGY 230
           L+EP  GSDA A +TTA      W+L G K WI N+  A   V+FA   R      I+ +
Sbjct: 126 LSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAF 185
Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL--PGVN 275
           LV    PGLT+ K E+K+G+R     +++ +   +P +  L  PG+ 
Sbjct: 186 LVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMG 232

>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 8/222 (3%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEF--PFHVIPKLGALRVAGGTI-KGYGCP 111
            +SE + +     + +  E+ P + EY E+ EF     ++ + G L + G  + + YG  
Sbjct: 33  FSSEHKXIAKTTEDFIVNEVLPEL-EYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGI 91
Query: 112 GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171
           G     +A+   + +R      T    H  +  L I L G+EEQK+KYLP LA    +A 
Sbjct: 92  GLDKVSSALIAEKFSRAGGFAITH-GAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAA 150
Query: 172 WALTEPAYGSDASALNTTAT-KVEG-GWILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
           +ALTEP  GSDA    TTA    EG  ++L G+K+WI NS FADV +++A+       + 
Sbjct: 151 YALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAK-IDGEHFSA 209
Query: 230 YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           ++V+KD  G++ +  E K G++      ++L+   VP E+ L
Sbjct: 210 FIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDALVPKENLL 251

>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404

Iteration: 1
 Score =  107 bits (268), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 5/221 (2%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK-GYGCPGH 113
            T EE  ++  V++  +++IAP+++   E ++    VI  L    + G  +   YG  G 
Sbjct: 29  FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGA 88
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S     + I E+A+VDAS + F  + ++L    I   G+EEQK  YLP L     +  + 
Sbjct: 89  SFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFC 147
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT---NQINGY 230
           L+E   GSD+ AL T A K    ++L G K WI ++  A + ++ A    T     I  +
Sbjct: 148 LSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSF 207
Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           LV +D PGL + K ENK+GLR      +  + V VP+ + L
Sbjct: 208 LVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANIL 248

>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 5/225 (2%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
            D  LT E++ ++   R   ++ I P+  EY EK E P+ VI KL  + +    I + YG
Sbjct: 1   IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYG 60
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
             G  +    I   E+A       T I + S L +  + L G+EEQK+++L  L +   +
Sbjct: 61  GMGLKMLDEVIVGEELAYACMGIYT-IPMASDLGITPVLLAGTEEQKERFLRPLTEKPAL 119
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
           A +AL+EP  GSDA+AL T A +    ++L G K WI N   A+ +V+FA      +  G
Sbjct: 120 AAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKG 179
Query: 230 ---YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
               +V++  PG    KI  K+G R     +++ + V VP E+RL
Sbjct: 180 VVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRL 224

>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 115/220 (52%), Gaps = 9/220 (4%)
Query: 37  PASKFPPCASDYYQFDDLLTSEEQAVRMKV-RECMEKEIAPIMAEYWEKAEFPFHVIPKL 95
           P S   P A      D LL S+E A  +++ RE  +K + PI+  + +   +P  V  +L
Sbjct: 2   PGSMIHPMA-----VDRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQL 56
Query: 96  GALRVAG-GTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEE 154
           GA  +      + +G  G         + EIA   AS +  + VHS L+   + + G+EE
Sbjct: 57  GAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEE 115
Query: 155 QKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADV 214
           QK+++LP +     I  ++L+EP  GSDA+AL   AT  +GG+++ G K WI +   AD 
Sbjct: 116 QKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADF 175
Query: 215 LVIFARNTTTNQ-INGYLVKKDAPGLTVTKIENKIGLRIV 253
             +FAR    ++ ++ +LV  D PGL+  K E K+GL  V
Sbjct: 176 YTLFARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAV 215

>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 3/135 (2%)
Query: 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-- 196
           H+S+  L +   G+EEQK+KYLP LA    IA + LTEP  GSDA A  T AT  E G  
Sbjct: 113 HTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKH 172
Query: 197 WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNG 256
           +IL G K+WI N+ FA +  +FA+         +LV++D PGL+    E K+G++     
Sbjct: 173 YILNGVKQWISNAGFAHLFTVFAK-VDGEHFTAFLVERDTPGLSFGPEEKKMGIKASSTR 231
Query: 257 DILLKKVFVPDEDRL 271
            ++L+ V VP E+ L
Sbjct: 232 QVILEDVKVPVENVL 246

>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 8/220 (3%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP--FHVIPKLGALRVAGGTIK-GYGCP 111
           L+ E++ +R  + + +++ +AP   E     EF        +LG L V G T    YG  
Sbjct: 13  LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72
Query: 112 GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171
           G       + + EI+R   +       HS+L +  +   G+E QK+KYLP L     I  
Sbjct: 73  GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132
Query: 172 WALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT-----TTNQ 226
            A++EP  GSD  ++   A K    +IL G K WI N   ADVL+++A+        +  
Sbjct: 133 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 192
Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
           I  ++V+K  PG + +K  +K+G+R     +++ +   +P
Sbjct: 193 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIP 232

>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 11/229 (4%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH-VIPKLGALRVAGGTI-KGYGCPG 112
           L+ E Q ++ +VR  + K+I P   ++  +  FP+   +  +G L   G  I + YG  G
Sbjct: 5   LSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEG 64
Query: 113 --HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
                  A I   EIAR  ++    + +       TI   GSE  K+KY+P L+    + 
Sbjct: 65  MDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLG 124
Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQI 227
            + +TEP  GSD  A+++TA      W+L G K WI N+  ADVL+ +A   +   +  +
Sbjct: 125 GFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGL 184
Query: 228 NGYLVK-KDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL--PG 273
           + ++++ ++ PG+  + +E K+G      G++ L  V VP E+ L  PG
Sbjct: 185 SAFVIEPRNFPGIKTSNLE-KLGSHASPTGELFLDNVKVPKENILGKPG 232

>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 109/219 (49%), Gaps = 5/219 (2%)
Query: 57  SEEQAVRMKVR-ECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK-GYGCPGHS 114
           +EEQ    KV  +   +E+AP MAE+ +K  FP  V+ K   L   G  I+   G  G S
Sbjct: 20  NEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLS 79
Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
               ++    +A    S + +I +H+  A +  +  G+EEQ+ K+ P L  +   A + L
Sbjct: 80  RLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSF-GNEEQRHKFCPPLCTMEKFASYCL 138
Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTN--QINGYLV 232
           TEP  GSDA++L T+A K    +IL G K +I  +  +D+ V+  R        I+  +V
Sbjct: 139 TEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGPKGISCIVV 198
Query: 233 KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +K  PGL+  K E K+G        ++ +   VP  +R+
Sbjct: 199 EKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRI 237

>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 18/250 (7%)
Query: 31  AFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH 90
           A PQ  P S F         F+  LT +++  +   R+   +EI P+ AEY    E+P  
Sbjct: 2   AVPQCEPGSGF--------SFE--LTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVP 51
Query: 91  VIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL 149
           ++ +   L +    I + +G  G  +  + +   E+A       T I  ++ L  + + +
Sbjct: 52  LLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEANT-LGQVPLII 110
Query: 150 CGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209
            G+ +Q++KYL  + +   +  + +TEP  GSD + + T A K    +I+ GQK WI N 
Sbjct: 111 GGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNG 170
Query: 210 TFADVLVIFARNT------TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKV 263
             A+   + AR+        +    G++V+ D PG+ + + E  +G R      I+ + V
Sbjct: 171 GKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDV 230
Query: 264 FVPDEDRLPG 273
            VP E+ L G
Sbjct: 231 RVPKENVLTG 240

>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421

Iteration: 1
 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 8/230 (3%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
           F    T +++  +   R+   +EI P+ AEY +  E+P  +I +   L +    I +  G
Sbjct: 37  FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 96
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
             G     A +   E+A       T I   +SL  + I + G+++QK+KYL  + +   +
Sbjct: 97  GLGLGTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 155
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
             + +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR+        
Sbjct: 156 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 215
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
                G++V+ D PG+ + + E  +G R      I+ + V VP E+ L G
Sbjct: 216 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIG 265

>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 8/230 (3%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
           F    T +++  +   R+   +EI P+ AEY +  E+P  +I +   L +    I +  G
Sbjct: 12  FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 71
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
             G     A +   E+A       T I   +SL  + I + G+++QK+KYL  + +   +
Sbjct: 72  GLGLGTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 130
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
             + +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR+        
Sbjct: 131 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 190
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
                G++V+ D PG+ + + E  +G R      I+ + V VP E+ L G
Sbjct: 191 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIG 240

>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-- 196
           H S+    I L G++ QK+KYLP LA   T+A + LTEP+ GSDA+++ T+A     G  
Sbjct: 133 HQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKY 192
Query: 197 WILEGQKRWIGNSTFADVLVIFARNTTTN--------QINGYLVKKDAPGLTVTKIENKI 248
           + L G K WI N   AD+  +FA+   T+        +I  ++V++   G+T    E K+
Sbjct: 193 YTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKM 252
Query: 249 GLRIVQNGDILLKKVFVPDEDRLPGVNS 276
           G++     ++    V VP E+ L  V S
Sbjct: 253 GIKASNTAEVFFDGVRVPSENVLGEVGS 280

>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-- 196
           H S+    I L G++ QK+KYLP LA   T+A + LTEP+ GSDA+++ T+A     G  
Sbjct: 113 HQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKY 172
Query: 197 WILEGQKRWIGNSTFADVLVIFARNTTTN--------QINGYLVKKDAPGLTVTKIENKI 248
           + L G K WI N   AD+  +FA+   T+        +I  ++V++   G+T    E K+
Sbjct: 173 YTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKM 232
Query: 249 GLRIVQNGDILLKKVFVPDEDRLPGVNS 276
           G++     ++    V VP E+ L  V S
Sbjct: 233 GIKASNTAEVFFDGVRVPSENVLGEVGS 260

>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 8/230 (3%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
           F    T +++  +   R+   +EI P+ AEY +  E+P  +I +   L +    I +  G
Sbjct: 12  FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 71
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
             G     A +   E+A       T I   +SL  + I + G+++QK+KYL  + +   +
Sbjct: 72  GLGLGTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 130
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
             + +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR+        
Sbjct: 131 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 190
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
                G++V+ D PG+ + + E  +G R      I+ + V VP E+ L G
Sbjct: 191 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIG 240

>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 8/225 (3%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK----GYGC 110
           LT  +Q       +  EK++AP + E   K  +   +I +L +L + G   +    G G 
Sbjct: 5   LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGD 64
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G  V    +A+ E+A+ DA  +  +    SL    I   G+E QK+K+L  L +   + 
Sbjct: 65  DGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLG 124
Query: 171 CWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFA---RNTTTNQ 226
            + LTEP  G+DAS   T ATK + G + L G K +I N   AD+ ++FA   ++   + 
Sbjct: 125 AFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHG 184
Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           I  ++++   PG T  K E+K+G+   Q  +++ + V VP E+ L
Sbjct: 185 ITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENML 229

>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 8/230 (3%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
           F   LT +++  +   R+   +EI P+ AEY    E+P  ++ +   L +    I + +G
Sbjct: 2   FSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFG 61
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
             G  +  + +   E+A       T I  ++ L  + + + G+ +Q++KYL  + +   +
Sbjct: 62  GLGLGIIDSCLITEELAYGCTGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLM 120
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
             + +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR+        
Sbjct: 121 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 180
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
           +    G++V+ D PG+ + + E  +G R      I+ + V VP E+ L G
Sbjct: 181 SKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTG 230

>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 21/225 (9%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCP--- 111
           L  E    R   R+ +EKE  P   ++ ++   P     K+G          G+ CP   
Sbjct: 10  LREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGE--------NGFLCPWVD 61
Query: 112 ----GHSVTGA-AIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
               G +   A ++ I E      S    I +H+ +    IA  G+EEQKQK+LP     
Sbjct: 62  EKYGGLNADFAYSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTG 121
Query: 167 NTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ 226
             I   A+TEP  GSD + ++TTA K    +I+ GQK +I N   AD++V+  +     +
Sbjct: 122 ELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAK 181
Query: 227 -----INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
                I+  +V++D PG T  +   K+GL      ++  +   VP
Sbjct: 182 PPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVP 226

>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 16/231 (6%)
Query: 56  TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCP---- 111
           T E +A+    R  +E+EIAP +AE+    E P  +   L A  V    + G G P    
Sbjct: 30  TPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDL--HLNAAEVG---LLGIGFPEEVG 84
Query: 112 ---GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL-PSLAQLN 167
              G+++  A +  A +A   ++     L    +A+  IA  GS+   ++Y+ P+LA   
Sbjct: 85  GSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAG-K 143
Query: 168 TIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT--TTN 225
            I    +TEP  GSD + L T A +    +++ G K +I +   AD +    R       
Sbjct: 144 MIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTGGPGYG 203
Query: 226 QINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS 276
            ++  ++ K++PG  V++  +K+G R     ++    V VP ++ +   NS
Sbjct: 204 GVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENS 254

>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 89/219 (40%), Gaps = 12/219 (5%)
Query: 56  TSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
           T+E +A+R  VR   E+E+ P  A  WE+A E P  +  K   L + G            
Sbjct: 27  TAEREALRKTVRAFAEREVLP-HAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGG 85
Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL-----CGSEEQKQKYLPSLAQLNTI 169
                + I E      S      V++SL    IA+      G +     Y+    +   I
Sbjct: 86  DGADPVVICEEMHYAGSPGG---VYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKI 142
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT--TTNQI 227
              A+TEP  GSD   L T A      +++ G K +I +   AD +V  AR        +
Sbjct: 143 GALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTGGPGAGGV 202
Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
           +  +V K  PG  VT+  +K+G R     ++    V VP
Sbjct: 203 SLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVP 241

>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 4/150 (2%)
Query: 126 ARVDASCSTF--ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA 183
           A V + CS+   ++    +A  T+   G   Q+  +L  L     +A    +E   GSD 
Sbjct: 62  AHVGSLCSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTS-GKLAAVGFSERQAGSDL 120
Query: 184 SALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTK 243
           SA+ T         +++G K W   + +AD LV+F      +     +V  D PG+ V +
Sbjct: 121 SAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSGAV-VVVPADTPGVRVER 179
Query: 244 IENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
           +    G R   + D+ L +V VP    L G
Sbjct: 180 VPKPSGCRAAGHADLHLDQVRVPAGAVLAG 209

>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 27/172 (15%)
Query: 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT--- 191
           F  +H  + +  I   G+++Q++K+LP   ++  I C+A TE  +GS+   L TTAT   
Sbjct: 117 FTDLHWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDP 176
Query: 192 ----KVEGGWILEGQKRWIGN----STFADVLVIFARNTTTNQ---INGYLVK------- 233
                V     L   K W G     ST A   V++AR  T  +   +NG++V+       
Sbjct: 177 QTDEFVIHSPTLTSSKWWPGGLGKVSTHA---VVYARLITDGKDYGVNGFIVQLRSLEDH 233
Query: 234 KDAPGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK 282
           K  PG+TV  I  K G      + NG +    V +P +  L  V+      K
Sbjct: 234 KPLPGVTVGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGK 285

>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 144 MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP-AYGSDASALNTTATKVEGGWILEGQ 202
           M  + L GSEEQK+++L  L Q N  +C+ +TEP    SDA+ +  +  + E  +++ G+
Sbjct: 124 MEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGK 183
Query: 203 KRW---IGNSTFADVLVIFARNTTTN-----QINGYLVKKDAPGLTVTKIENKIGLRIVQ 254
           K W    GN     + ++  R   T+     Q +  LV  + PG+ + +  +  G     
Sbjct: 184 KWWSSGAGNPK-CKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNF 242
Query: 255 NG---DILLKKVFVPDEDRLPGVNSFQDTSKVRL 285
           +G   +I   +V VP  + + G     + S+ RL
Sbjct: 243 HGGHFEIHFNQVRVPATNLILGEGRGFEISQGRL 276

>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 659

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 27/161 (16%)
Query: 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT--- 191
           ++ +H  + +  I   G+EEQ++K+L    ++  I C+A TE  +GS+   L TTAT   
Sbjct: 98  YVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDP 157
Query: 192 KVEGGWI----LEGQKRWIGN----STFADVLVIFARNTTTNQ---INGYLVKKDA---- 236
           K +   I        K W G     ST A   V++AR  T  +   I+G++V+  +    
Sbjct: 158 KTDEFVIHTPTQTASKWWPGGLGKVSTHA---VVYARLITNGKDYGIHGFIVQLRSLEDH 214
Query: 237 ---PGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRL 271
              P +TV  I  K+G      + NG ++   V +P +  L
Sbjct: 215 SPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQML 255

>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization Enzyme C Length = 437

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 12/177 (6%)
Query: 108 YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167
           YG  G     A   + EIA  D S       H + A + I L GS+EQ++     +AQ N
Sbjct: 86  YGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPM-IELIGSQEQEEHLYTQIAQNN 144
Query: 168 TIACWALTEPAYGSDASALN--TTATKVE-GGWILEGQKRWIGNSTFADVLVIFARNTTT 224
               W     +  +++  L+   +AT  E GG++L G K +   +  +D+L +F      
Sbjct: 145 ----WWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDD 200
Query: 225 NQINGYLVKKDAP----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
           +   G ++    P    G+T       IG+R   +G      V V  ++ L   N+F
Sbjct: 201 SPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAF 257

>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEP-AYGSDASALNTTATKVEGG-WILEGQKRWIGN 208
           GS+EQK+ +L  L + +  + + +TEP    SDA+ +  TA  VEG   ++ G+K W   
Sbjct: 125 GSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAV-VEGDEVVINGRKWWSTG 183
Query: 209 STFADVLVIFARNTTTNQINGY------LVKKDAPGLTVTKIENKIGL 250
               D  VI     T    + Y      LV  D PG+TV ++   +G 
Sbjct: 184 VGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGF 231

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	1e-145
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	1e-123
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	1e-122
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	1e-120
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	1e-120
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	1e-118
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	8e-69
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	1e-67
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	2e-67
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	5e-66
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	6e-66
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	2e-65
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	4e-65
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	6e-65
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	7e-64
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	2e-62
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	1e-61
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	2e-59
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	2e-59
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	3e-58
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	4e-57
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	6e-57
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	9e-55
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	4e-52
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	1e-50
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	3e-50
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	2e-49
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	2e-49
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	2e-49
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	2e-28
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	2e-27
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	2e-25
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	3e-18
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	1e-15
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	2e-12
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	1e-10
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	2e-09
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	3e-09
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	6e-09

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436

 Score =  413 bits (1065), Expect = e-145
 Identities = 225/283 (79%), Positives = 249/283 (87%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240

Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
            TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKV
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKV 283

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403

 Score =  356 bits (916), Expect = e-123
 Identities = 90/256 (35%), Positives = 135/256 (52%), Gaps = 3/256 (1%)

Query: 29  SVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP 88
           S+              A D    + +L++EE+ +R  VR  +++ I P +A ++E  E P
Sbjct: 4   SMTNSAVAQPRSQRRGADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELP 63

Query: 89  FH-VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTI 147
              +  +LG L + G  +KGYGC G S     +A  E+   D+   + + V  SLAM  I
Sbjct: 64  ARELAVELGELGLLGMHLKGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAI 123

Query: 148 ALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207
              GS+EQK ++LP +A  + I C+ LTEP +GSD + + T AT+    WIL G K WI 
Sbjct: 124 HAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWIT 183

Query: 208 NSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPD 267
           N + ADV V++AR  T   I G++V  D PG T   I++K+ LR     +++L  V +PD
Sbjct: 184 NGSVADVAVVWAR--TDEGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPD 241

Query: 268 EDRLPGVNSFQDTSKV 283
             RLPG  S     + 
Sbjct: 242 SARLPGATSLGAPLRC 257

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392

 Score =  353 bits (908), Expect = e-122
 Identities = 87/240 (36%), Positives = 125/240 (52%), Gaps = 3/240 (1%)

Query: 46  SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
            D    ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TI
Sbjct: 5   QDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTI 64

Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
           KGYGC G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+
Sbjct: 65  KGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAK 124

Query: 166 LNTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTT 223
              + C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR   
Sbjct: 125 GELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CE 183

Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
              I G+L++K   GL+  +I+ K  LR    G I++  V VP+E+ LPG +S       
Sbjct: 184 DGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC 243

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399

 Score =  350 bits (900), Expect = e-120
 Identities = 81/255 (31%), Positives = 129/255 (50%), Gaps = 4/255 (1%)

Query: 29  SVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP 88
           S+     +  S + P   + +  D LL  +E+ +   VR+ ++  + P +  ++E A  P
Sbjct: 2   SMTLTAPSKKSTYAP--LELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLP 59

Query: 89  FHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIA 148
             +  + G L V G  ++GYGC G +     +A  E+   D+   +F+ V  SL+M +I 
Sbjct: 60  SELAKEFGNLGVLGMHLQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIY 119

Query: 149 LCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208
             GSEEQK ++LP LA  + I C+ LTEP +GS+ + + T A +    WIL G K WI N
Sbjct: 120 RYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITN 179

Query: 209 STFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDE 268
              ADV  ++A+  T + I G+LV  D PG T  +I  K+ LR     +++L  V +P  
Sbjct: 180 GNLADVATVWAQ--TDDGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPAS 237

Query: 269 DRLPGVNSFQDTSKV 283
            +LP           
Sbjct: 238 AQLPLAEGLSAPLSC 252

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385

 Score =  349 bits (897), Expect = e-120
 Identities = 86/239 (35%), Positives = 129/239 (53%), Gaps = 3/239 (1%)

Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
           D+Y  +DLLT EE+ V+   R  +EKE  P + ++WE+  FP H+IP+   L   G T+ 
Sbjct: 3   DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLP 62

Query: 107 -GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
             YG  G S     +   E+ RVD+   +F+ V SSL M  I   GSEEQK+++LP LA+
Sbjct: 63  PEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLAR 122

Query: 166 LNTIACWALTEPAYGSDASA-LNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
              + C+ LTEP  GSD    + T A +    W+L G K WI N   A + VI+A+    
Sbjct: 123 GEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAK-DEG 181

Query: 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
            ++ G+LV  D PG    +++ K+ LR     +++L++V VP+  RLP     +     
Sbjct: 182 GEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAPLSC 240

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396

 Score =  344 bits (885), Expect = e-118
 Identities = 84/249 (33%), Positives = 128/249 (51%), Gaps = 3/249 (1%)

Query: 38  ASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGA 97
            +       D    D  L  +E+ VR       + ++AP + E +        +  ++G 
Sbjct: 2   MAAATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGE 61

Query: 98  LRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQK 156
           + + G TI + YG PG       +   E+ RVD+   + + V SSL M+ I   GS+ QK
Sbjct: 62  IGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQK 121

Query: 157 QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216
           +KYLP LA    I C+ LTEP +GSD  ++ T A KV GG+ L G K WI NS  ADV V
Sbjct: 122 EKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFV 181

Query: 217 IFAR--NTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV 274
           ++A+      ++I G++++K   GL+   I  K+GLR    G+I+L + FVP+E+ LP V
Sbjct: 182 VWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHV 241

Query: 275 NSFQDTSKV 283
              +     
Sbjct: 242 KGLRGPFTC 250

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372

 Score =  216 bits (554), Expect = 8e-69
 Identities = 79/219 (36%), Positives = 121/219 (55%), Gaps = 3/219 (1%)

Query: 54  LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPG 112
            LT E++ V   VR    + + P+  EY  KAE+P+  +  L  L + G T  + +G  G
Sbjct: 2   TLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVG 61

Query: 113 HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
                 A+A+ E+A  D S +  + V S L    +   GSE QK++YL  LA+   I  +
Sbjct: 62  LDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAF 121

Query: 173 ALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLV 232
            LTEP  GSDA +L   A +V+GG++L G K WI ++  A + V+ AR  T   I+ +LV
Sbjct: 122 CLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMAR--TEKGISAFLV 179

Query: 233 KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +K  PGL+  + E K+GL      ++ L++VFVP+E+ L
Sbjct: 180 EKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLL 218

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391

 Score =  214 bits (547), Expect = 1e-67
 Identities = 74/221 (33%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L    Q +    R+  EKE+ PI A+  ++  FP   + K+G L +    + +  G  G 
Sbjct: 6   LPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGL 65

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                AIA+ EI+R  AS    + V++SL +  I   GS+EQKQ ++      + I C+A
Sbjct: 66  DYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFA 125

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQINGY 230
           L+EP  GSDA A +TTA      W+L G K WI N+  A   V+FA   R      I+ +
Sbjct: 126 LSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAF 185

Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           LV    PGLT+ K E+K+G+R     +++ +   +P +  L
Sbjct: 186 LVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSIL 226

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387

 Score =  213 bits (546), Expect = 2e-67
 Identities = 81/225 (36%), Positives = 114/225 (50%), Gaps = 8/225 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
             +EE+ V    RE ++ E+AP  AE      FP+ ++ KL    V G  + + YG  G 
Sbjct: 7   EGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGL 66

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S    A  +  IA  D + +  +  H+SLA   I L GSE QK+ +LP LA    +  W 
Sbjct: 67  STRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWG 126

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ------- 226
           LTEP  GSDA+AL T A KVEGGW L G K++I   + A V V+ AR             
Sbjct: 127 LTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQG 186

Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           I+ +   +   GL V + E K+GL       ++L+ +FVP+E  L
Sbjct: 187 ISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALL 231

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379

 Score =  210 bits (536), Expect = 5e-66
 Identities = 72/221 (32%), Positives = 113/221 (51%), Gaps = 5/221 (2%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT E++ ++   R   ++ I P+  EY EK E P+ VI KL  + +    I + YG  G 
Sbjct: 5   LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGL 64

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
            +    I   E+A       T I + S L +  + L G+EEQK+++L  L +   +A +A
Sbjct: 65  KMLDEVIVGEELAYACMGIYT-IPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFA 123

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR---NTTTNQINGY 230
           L+EP  GSDA+AL T A +    ++L G K WI N   A+ +V+FA          +   
Sbjct: 124 LSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVAL 183

Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +V++  PG    KI  K+G R     +++ + V VP E+RL
Sbjct: 184 VVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRL 224

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score =  210 bits (537), Expect = 6e-66
 Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 5/221 (2%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T EE  ++  V++  +++IAP+++   E ++    VI  L    + G  +   YG  G 
Sbjct: 29  FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGA 88

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S     + I E+A+VDAS + F  + ++L    I   G+EEQK  YLP L     +  + 
Sbjct: 89  SFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFC 147

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQINGY 230
           L+E   GSD+ AL T A K    ++L G K WI ++  A + ++ A          I  +
Sbjct: 148 LSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSF 207

Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           LV +D PGL + K ENK+GLR      +  + V VP+ + L
Sbjct: 208 LVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANIL 248

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score =  208 bits (533), Expect = 2e-65
 Identities = 74/230 (32%), Positives = 111/230 (48%), Gaps = 7/230 (3%)

Query: 46  SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
             +  F   L  E  A+R  +R   EKEIAP  AE  EKA FP   +  L +   +   +
Sbjct: 12  PSFELFQ--LPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHV 69

Query: 106 -KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
            + YG  G       I I E+ARVD S S    V+  L  + + L GSEE K++ LP++A
Sbjct: 70  PEEYGGQGADSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVA 128

Query: 165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR---N 221
               +A +AL+E   GSDA+++ T A      WIL G K WI N   +    + A    +
Sbjct: 129 SGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPD 188

Query: 222 TTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
              N I+ ++V KD  G TV   E K+G++     ++  +   +P +  +
Sbjct: 189 KGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRII 238

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score =  207 bits (530), Expect = 4e-65
 Identities = 70/237 (29%), Positives = 112/237 (47%), Gaps = 7/237 (2%)

Query: 37  PASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLG 96
           P S   P A D        + E   +    RE  +K + PI+  + +   +P  V  +LG
Sbjct: 2   PGSMIHPMAVDRLL----PSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLG 57

Query: 97  ALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQ 155
           A  +      + +G  G         + EIA   AS +  + VHS L+   + + G+EEQ
Sbjct: 58  AAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQ 116

Query: 156 KQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVL 215
           K+++LP +     I  ++L+EP  GSDA+AL   AT  +GG+++ G K WI +   AD  
Sbjct: 117 KKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFY 176

Query: 216 VIFAR-NTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
            +FAR    +  ++ +LV  D PGL+  K E K+GL  V           +  + R+
Sbjct: 177 TLFARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRI 233

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383

 Score =  207 bits (529), Expect = 6e-65
 Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 8/225 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK----GYGC 110
           LT  +Q       +  EK++AP + E   K  +   +I +L +L + G   +    G G 
Sbjct: 5   LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGD 64

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G  V    +A+ E+A+ DA  +  +    SL    I   G+E QK+K+L  L +   + 
Sbjct: 65  DGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLG 124

Query: 171 CWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFAR---NTTTNQ 226
            + LTEP  G+DAS   T ATK + G + L G K +I N   AD+ ++FA    +   + 
Sbjct: 125 AFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHG 184

Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           I  ++++   PG T  K E+K+G+   Q  +++ + V VP E+ L
Sbjct: 185 ITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENML 229

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396

 Score =  205 bits (523), Expect = 7e-64
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 10/225 (4%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T +++  +   R+   +EI P+ AEY +  E+P  +I +   L +    I +  G  G 
Sbjct: 16  FTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGL 75

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
               A +   E+A       T I  +S L  + I + G+++QK+KYL  + +   +  + 
Sbjct: 76  GTFDACLISEELAYGCTGVQTAIEGNS-LGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYC 134

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ------- 226
           +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR +  +        
Sbjct: 135 VTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLAR-SDPDPKAPANKA 193

Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
             G++V+ D PG+ + + E  +G R      I+ + V VP E+ L
Sbjct: 194 FTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVL 238

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393

 Score =  200 bits (512), Expect = 2e-62
 Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 10/223 (4%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L  E++  +    +   +E+AP MAE+ +K  FP  V+ K   L   G  I    G  G 
Sbjct: 19  LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGL 78

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S    ++    +A    S + +I +H+ +    I   G+EEQ+ K+ P L  +   A + 
Sbjct: 79  SRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYC 137

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ-----IN 228
           LTEP  GSDA++L T+A K    +IL G K +I  +  +D+ V+  R   T       I+
Sbjct: 138 LTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCR---TGGPGPKGIS 194

Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
             +V+K  PGL+  K E K+G        ++ +   VP  +R+
Sbjct: 195 CIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRI 237

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394

 Score =  199 bits (508), Expect = 1e-61
 Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 11/239 (4%)

Query: 48  YYQFDDL---LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF--HVIPKLGALRVAG 102
               DD    L+ E++ +R  + + +++ +AP   E     EF        +LG L V G
Sbjct: 3   LLPVDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLG 62

Query: 103 GTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
            T    YG  G       + + EI+R   +       HS+L +  +   G+E QK+KYLP
Sbjct: 63  ITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLP 122

Query: 162 SLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 221
            L     I   A++EP  GSD  ++   A K    +IL G K WI N   ADVL+++A+ 
Sbjct: 123 KLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKT 182

Query: 222 TTTNQ-----INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN 275
                     I  ++V+K  PG + +K  +K+G+R     +++ +   +P  + L   N
Sbjct: 183 DLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHEN 241

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607

 Score =  198 bits (506), Expect = 2e-59
 Identities = 72/280 (25%), Positives = 113/280 (40%), Gaps = 19/280 (6%)

Query: 4   HSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFP-PCASDYYQFDDLLTSEEQAV 62
           H   H   VD    + YF   +  + +   Q T    FP P        ++  T   + +
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMSFAVGMFKGQLTTDQVFPYP-----SVLNEEQTQFLKEL 57

Query: 63  RMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIA 121
              V    E+   P  A+              L  L   G  +    G  G   T  A  
Sbjct: 58  VEPVSRFFEEVNDP--AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARL 115

Query: 122 IAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGS 181
           +  +   D      +  H S+    I L G++ QK+KYLP LA   T+A + LTEP+ GS
Sbjct: 116 VEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGS 175

Query: 182 DASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFAR--------NTTTNQINGYL 231
           DA+++ T+A     G  + L G K WI N   AD+  +FA+             +I  ++
Sbjct: 176 DAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFV 235

Query: 232 VKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           V++   G+T    E K+G++     ++    V VP E+ L
Sbjct: 236 VERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVL 275

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366

 Score =  192 bits (491), Expect = 2e-59
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 11/216 (5%)

Query: 57  SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSV 115
            E  A+       +   +    AE+    E P  ++ +LGA  +    +   +G  G   
Sbjct: 2   PERDAL-------LTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGS 54

Query: 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175
                  A +  + +S  + +     +A  T+   G   Q+  +L  L     +A    +
Sbjct: 55  RENGEFTAHVGSLCSSLRSVMTSQG-MAAWTVQRLGDAGQRATFLKELTS-GKLAAVGFS 112

Query: 176 EPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKD 235
           E   GSD SA+ T         +++G K W   + +AD LV+F            +V  D
Sbjct: 113 ERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGL-QEDGSGAVVVVPAD 171

Query: 236 APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
            PG+ V ++    G R   + D+ L +V VP    L
Sbjct: 172 TPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVL 207

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397

 Score =  190 bits (485), Expect = 3e-58
 Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 11/226 (4%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF-HVIPKLGALRVAGGTI-KGYGCPG 112
           L+ E Q ++ +VR  + K+I P   ++  +  FP+   +  +G L   G  I + YG  G
Sbjct: 5   LSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEG 64

Query: 113 --HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
                  A I   EIAR  ++    + +       TI   GSE  K+KY+P L+    + 
Sbjct: 65  MDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLG 124

Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ---- 226
            + +TEP  GSD  A+++TA      W+L G K WI N+  ADVL+ +A  T        
Sbjct: 125 GFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAY-TDKAAGSRG 183

Query: 227 INGYLV-KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           ++ +++  ++ PG+  + +E K+G      G++ L  V VP E+ L
Sbjct: 184 LSAFVIEPRNFPGIKTSNLE-KLGSHASPTGELFLDNVKVPKENIL 228

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577

 Score =  191 bits (488), Expect = 4e-57
 Identities = 69/222 (31%), Positives = 108/222 (48%), Gaps = 8/222 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAE--FPFHVIPKLGALRVAGGTI-KGYGCP 111
                + +    R  +E+E+ P++    E  E      ++ K G L +    + + YG  
Sbjct: 28  FDESVKEIARTTRTFVEREVLPLLER-MEHGELELNVPLMRKAGELGLLAIDVPEEYGGL 86

Query: 112 GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171
                 + +   E++      S     H+S+  L +   G+EEQK+KYLP LA    IA 
Sbjct: 87  DLPKVISTVVAEELSG-SGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAA 145

Query: 172 WALTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
           + LTEP  GSDA A  T AT  E G  +IL G K+WI N+ FA +  +FA+         
Sbjct: 146 YCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAK-VDGEHFTA 204

Query: 230 YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +LV++D PGL+    E K+G++      ++L+ V VP E+ L
Sbjct: 205 FLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVL 246

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597

 Score =  191 bits (488), Expect = 6e-57
 Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 17/245 (6%)

Query: 32  FPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF-- 89
             + T    F P         +  +SE + +     + +  E+ P +    E+ EF    
Sbjct: 19  VDEITIDQVFTP---------EDFSSEHKMIAKTTEDFIVNEVLPELEY-LEQHEFDRSV 68

Query: 90  HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIA 148
            ++ + G L + G  + + YG  G     +A+   + +R     +     H  +  L I 
Sbjct: 69  RLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GFAITHGAHVGIGSLPIV 127

Query: 149 LCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEGQKRWI 206
           L G+EEQK+KYLP LA    +A +ALTEP  GSDA    TTA     G  ++L G+K+WI
Sbjct: 128 LFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWI 187

Query: 207 GNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
            NS FADV +++A+       + ++V+KD  G++ +  E K+G++      ++L+   VP
Sbjct: 188 TNSAFADVFIVYAK-IDGEHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVP 246

Query: 267 DEDRL 271
            E+ L
Sbjct: 247 KENLL 251

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439

 Score =  182 bits (464), Expect = 9e-55
 Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 10/241 (4%)

Query: 37  PASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLG 96
           P       ++        +T   + +  ++   +   I    AE+     FP      L 
Sbjct: 4   PPWTARQDSTTGLYAP--VTPAGRVLLDRLAAHLP-RIRSTAAEHDRDGTFPTDTFDALR 60

Query: 97  ALRVAGGTI-KGYGCPGH-SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEE 154
              + G T+    G  G   +   A+A+  +AR DAS +  + +  S  +         +
Sbjct: 61  KDGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGD 120

Query: 155 QKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADV 214
           ++ + L        +A  A+         +A+ T      GGW+L G+K  +  +     
Sbjct: 121 ERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTH 180

Query: 215 LVIFARNTTTNQ----INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 270
            VI AR T        +   +V +D PG TV    + +G+R     DI+     +P +  
Sbjct: 181 FVINAR-TDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHV 239

Query: 271 L 271
           L
Sbjct: 240 L 240

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439

 Score =  175 bits (446), Expect = 4e-52
 Identities = 45/254 (17%), Positives = 84/254 (33%), Gaps = 38/254 (14%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEY------WEKAEFPFHVIPKLGALRVAGGTI-KG 107
           L+  +   R   +      +    AEY        + +       +     +    +   
Sbjct: 6   LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIP 65

Query: 108 YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA--Q 165
            G    S+   +I + E+  V+ + S   +V ++L ++ + LC S   ++K+L      +
Sbjct: 66  LGGTMESLVHESIILEELFAVEPATSI-TIVATALGLMPVILCDSPSLQEKFLKPFISGE 124

Query: 166 LNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS-----TFADVL 215
              +A    +EP   ++        L TTA KV   W++ G+K W  NS       AD+ 
Sbjct: 125 GEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLA 184

Query: 216 VIFAR------------NTTTNQINGYLVKKDAPGLT------VTKIENKIGLRIVQNGD 257
            +  R                 QI   LV ++           +       G        
Sbjct: 185 CVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPH 244

Query: 258 ILLKKVFVPDEDRL 271
               +  VP E+ L
Sbjct: 245 TRFTEFHVPHENLL 258

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403

 Score =  170 bits (434), Expect = 1e-50
 Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T+E +A+R  VR   E+E+ P   E+    E P  +  K   L + G    +  G  G 
Sbjct: 26  TTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGG 85

Query: 114 SVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
                 +   E+    +    +  L    +A+  +   G +     Y+    +   I   
Sbjct: 86  DGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGAL 145

Query: 173 ALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ-----I 227
           A+TEP  GSD   L T A      +++ G K +I +   AD +V  AR   T       +
Sbjct: 146 AITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAAR---TGGPGAGGV 202

Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +  +V K  PG  VT+  +K+G R     ++    V VP  + +
Sbjct: 203 SLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLV 246

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385

 Score =  169 bits (430), Expect = 3e-50
 Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 9/225 (4%)

Query: 54  LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPG 112
            L  E    R   R+ +EKE  P   ++ ++   P     K+G        + + YG   
Sbjct: 9   YLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLN 68

Query: 113 HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
                + +   E+ +V +S    I +H+ +    IA  G+EEQKQK+LP       I   
Sbjct: 69  ADFAYSVVINEELEKVGSS-LVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAI 127

Query: 173 ALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ------ 226
           A+TEP  GSD + ++TTA K    +I+ GQK +I N   AD++V+  + T          
Sbjct: 128 AMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACK-TDPQAKPPHRG 186

Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           I+  +V++D PG T  +   K+GL      ++  +   VP  + L
Sbjct: 187 ISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLL 231

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438

 Score =  168 bits (428), Expect = 2e-49
 Identities = 42/252 (16%), Positives = 78/252 (30%), Gaps = 37/252 (14%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEY-------WEKAEFPFHVIPKLGALRVAGGTI-K 106
           L++ ++      R      + P    Y         + +          +  +  G I  
Sbjct: 7   LSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISP 66

Query: 107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA-- 164
            +G  G ++  +AI + E   V+ S +  I     L +  I L  +  Q  ++L      
Sbjct: 67  AHGGTGGTLIESAILVEECYSVEPSAALTIFATG-LGLTPINL-AAGPQHAEFLAPFLSG 124

Query: 165 QLNTIACWALTEPAYGSDA-----SALNTTATKVEGGWILEGQKRWIGNSTFAD------ 213
           + + +A    +EP   ++A         TTA      W++ G+K W  N    D      
Sbjct: 125 EGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDL 184

Query: 214 --VLVIFARNTTTNQING------------YLVKKDAPGLTVTKIENKIGLRIVQNGDIL 259
             V+   A        +              L +       V +     G   V    + 
Sbjct: 185 ACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVR 244

Query: 260 LKKVFVPDEDRL 271
              V VP ++ L
Sbjct: 245 YTNVRVPTKNVL 256

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395

 Score =  167 bits (426), Expect = 2e-49
 Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 20/230 (8%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT   + V   +   +   I+   A+      FP     +   L + G T+    G  G 
Sbjct: 9   LTPAGRTVVDLLAGVIP-RISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGL 67

Query: 114 -SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCG-----SEEQKQKYLPSLAQLN 167
             +   A A+  +A  DAS +    V  S  +                 ++ L ++A+  
Sbjct: 68  TRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGE 127

Query: 168 TIACWALTEPAYGSDASALNTTATK-VEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ 226
              C A        DA  + T       GGW+L G+K  +  +  A    + A+    + 
Sbjct: 128 AAVCGA------LKDAPGVVTELHSDGAGGWLLSGRKVLVSMAPIATHFFVHAQ-RRDDD 180

Query: 227 ----INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP 272
               +   +V +DAPGLTV    + +G+R     +++  +  V  ++ L 
Sbjct: 181 GSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLE 230

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403

 Score =  167 bits (426), Expect = 2e-49
 Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 6/225 (2%)

Query: 52  DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGC 110
           +   T E +A+    R  +E+EIAP +AE+    E P  +      + + G    +  G 
Sbjct: 26  EAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGG 85

Query: 111 PGHSVTGAAIAIAEIARVDASCS-TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
            G +   +A+    I     S      L    +A+  IA  GS+   ++Y+        I
Sbjct: 86  SGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMI 145

Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
               +TEP  GSD + L T A +    +++ G K +I +   AD +    R T      G
Sbjct: 146 GSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVR-TGGPGYGG 204

Query: 230 ---YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
               ++ K++PG  V++  +K+G R     ++    V VP ++ +
Sbjct: 205 VSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLV 249

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661

 Score =  113 bits (284), Expect = 2e-28
 Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 18/177 (10%)

Query: 113 HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
           + ++     +     V       + +H  + + T+    + EQ++++      L     +
Sbjct: 77  YGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTY 136

Query: 173 ALTEPAYGSDASALNTTATKVEGG--WILEG-----QKRWIGNS-TFADVLVIFARNTTT 224
           A TE  +G+    L TTAT       +IL        K W G     ++  ++ A+  T 
Sbjct: 137 AQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQ 196

Query: 225 NQ---INGYLV-------KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
            +   ++ ++V        K  PG+TV  I  K G   + NG + +    +P E+ L
Sbjct: 197 GECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENML 253

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659

 Score =  110 bits (276), Expect = 2e-27
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 23/171 (13%)

Query: 123 AEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSD 182
           A   R       ++ +H  + +  I   G+EEQ++K+L    ++  I C+A TE  +GS+
Sbjct: 86  AGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSN 145

Query: 183 ASALNTTATKVEGG--WILEG-----QKRWIGNS-TFADVLVIFARNTTTN--------- 225
              L TTAT       +++        K W G     +   V++AR   TN         
Sbjct: 146 VQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYAR-LITNGKDYGIHGF 204

Query: 226 --QINGYLVKKDAPGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRL 271
             Q+         P +TV  I  K+G      + NG ++   V +P +  L
Sbjct: 205 IVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQML 255

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422

 Score =  103 bits (259), Expect = 2e-25
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 17/225 (7%)

Query: 56  TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHS 114
                ++  K+++ +  +IA       +    P   I  L  + +      K YG    S
Sbjct: 34  DVSGVSMLEKIQQ-ILPQIAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMS 92

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
           +   A  I  +A   A  +    +  + +   IA+   + Q +              W  
Sbjct: 93  LPDFANCIVTLAGACAGTAWAFSLLCTHSHQ-IAMFSKQLQDEI-------------WLK 138

Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY-LVK 233
              A  S + A      +VEGG IL G   W      A+  ++       +    Y    
Sbjct: 139 DPDATASSSIAPFGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGFNRFDADGNKIYSFGV 198

Query: 234 KDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
                  +        ++   +  + L  VF+P+       +  +
Sbjct: 199 IPRSDYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMME 243

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 32/222 (14%)

Query: 72  KEIAPIMAEYWEKAE----FPFHVIPKLGALRVAG-GTI---KGYGCPGHSVTGAAIAIA 123
             + P + E  ++ E     P   +    AL+  G   +   + +G           A+ 
Sbjct: 17  DALLPTLRERAQETEDLRRIPDDSM---KALQETGFFRLLQPEQWGGYQADPVLFYSAVR 73

Query: 124 EIARVDAS---CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           +IA    S    S+ I VH+      +AL   + Q+               W        
Sbjct: 74  KIASACGSTGWVSSIIGVHN----WHLALFSQQAQEDV-------------WGNDTDVRI 116

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYL-VKKDAPGL 239
           S + A       V+GG+ + G   W      A   V+        +   ++         
Sbjct: 117 SSSYAPMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPREDY 176

Query: 240 TVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTS 281
            +  + N +GLR   +  ++++ VFVP    L        T+
Sbjct: 177 RIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTA 218

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 59/283 (20%), Positives = 106/283 (37%), Gaps = 57/283 (20%)

Query: 31  AFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE------K 84
           +  + T ++  P   +    F    T + Q V +KV+  M++ I P   E  E       
Sbjct: 1   SMSKRTFSTVLPQIDTTGQLFV--QTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNEN 58

Query: 85  AEFPFHVIPKLGALRVAGGTIKGYGC--------PGHSVTGAAIAIAEIARVDASCSTFI 136
           +   +     +  L+      K  G          G S    A+ IAE            
Sbjct: 59  SVDKWGKPLVIDKLKEM---AKVEGLWNLFLPAVSGLSHVDYAL-IAEE----------- 103

Query: 137 LVHSSLA-------------MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAY-GSD 182
                 A             M  + L GSEEQK+++L  L Q N  +C+ +TEP    SD
Sbjct: 104 TGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSD 163

Query: 183 ASALNTTATKVEGGWILEGQKRWIGNSTFAD--VLVIFARNTTTNQINGY------LVKK 234
           A+ +  +  + E  +++ G+K W   +      + ++  R T    ++ +      LV  
Sbjct: 164 ATNIECSIQRDEDSYVINGKKWWSSGAGNPKCKIAIVLGR-TQNTSLSRHKQHSMILVPM 222

Query: 235 DAPGLTVTKIENKIGLRIVQNG---DILLKKVFVPDEDRLPGV 274
           + PG+ + +  +  G     +G   +I   +V VP  + + G 
Sbjct: 223 NTPGVKIIRPLSVFGYTDNFHGGHFEIHFNQVRVPATNLILGE 265

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 30/223 (13%)

Query: 72  KEIAPIMAEYWEKAE----FPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126
           + +A  +     ++E            L           + YG         A  +  +A
Sbjct: 30  EVVAEEIRGQAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVA 89

Query: 127 RVDAS---CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA 183
            +D +    +  + VH       +A    + Q++              W      + +  
Sbjct: 90  ALDGASGWVTGIVGVHP----WELAFADPQVQEE-------------IWGEDNDTWMASP 132

Query: 184 SALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQING-----YLVKKDAPG 238
            A    AT V+GG++L+G+  +   +       + A               +++      
Sbjct: 133 YAPMGVATPVDGGYVLKGRWSFSSGTDHCQWAFLGAMVGDGEGGIATPSSLHVILPRTDY 192

Query: 239 LTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTS 281
             V    + IGLR   + D+++   FVP    L         +
Sbjct: 193 QIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRA 235

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 30/155 (19%)

Query: 107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
           G  CP  ++T AA  +              L+             +     +Y   L   
Sbjct: 130 GSLCPI-TMTFAATPL--------------LLQM--LPAPFQDWTTPLLSDRYDSHLLPG 172

Query: 167 NTIACW----ALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFARN 221
                      +TE   GSD  +  T A ++E G + L G K W  +   +D  ++ A+ 
Sbjct: 173 GQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WFFSVPQSDAHLVLAQ- 230

Query: 222 TTTNQINGYLVKKDAP-----GLTVTKIENKIGLR 251
            T   ++ + V +  P      + + ++++K+G R
Sbjct: 231 -TAGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNR 264

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 28/186 (15%), Positives = 54/186 (29%), Gaps = 35/186 (18%)

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQK--------QKYLPSLAQLNTIACW 172
               + +  ASC    +   +   +       +++          +YL  + + + I   
Sbjct: 88  MQRLLGQKTASCFQRCVGMDAFNAVFSTTYEIDQKYGTNYHKNFTEYLKYIQENDLIVDG 147

Query: 173 ALTEPAYG--------SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
           A+T+P            D         K E G ++ G K     S  +   +I      T
Sbjct: 148 AMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMT 207

Query: 225 NQINGY----LVKKDAPGLTVTKIENKIGLRIVQNGD---------------ILLKKVFV 265
                Y        DA GL +         R ++ G                ++   VF+
Sbjct: 208 EADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFI 267

Query: 266 PDEDRL 271
           P++   
Sbjct: 268 PNDRIF 273

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481

 Score = 56.3 bits (135), Expect = 3e-09
 Identities = 22/140 (15%), Positives = 37/140 (26%), Gaps = 22/140 (15%)

Query: 154 EQKQKYLPSLAQLNTIACWALTEPAYG--------SDASALNTTATKVEGGWILEGQKRW 205
           E  + Y   L   +     ALT P            D         + E G ++ G +  
Sbjct: 124 ENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPYIPVGVVKQTEKGIVVRGARMT 183

Query: 206 IGNSTFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIV--------- 253
                  +VL+  +             + +    PGL     E  +G             
Sbjct: 184 ATFPLADEVLIFPSILLQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRV 243

Query: 254 --QNGDILLKKVFVPDEDRL 271
              +  ++   V VP E   
Sbjct: 244 EEMDCLVIFDDVLVPWERVF 263

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515

 Score = 55.6 bits (133), Expect = 6e-09
 Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 19/137 (13%)

Query: 154 EQKQKYLPSLAQLNTIACWALTEP------AYGSDASALNTTATKVEGGWILEGQKRWIG 207
           +    +L  L + +        +P            S       K + G I+ G K    
Sbjct: 133 QNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGIIVNGVKAVGT 192

Query: 208 NSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGD------- 257
              F D + I           Q+    +  + PG+TV   E+ +     ++         
Sbjct: 193 GIAFGDYMHIGCLYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDEL 252

Query: 258 ---ILLKKVFVPDEDRL 271
               +   VF+P E   
Sbjct: 253 DSTTVFDNVFIPWEQVF 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	100.0
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	100.0
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	100.0
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	100.0
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	100.0
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	100.0
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	100.0
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	100.0
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	100.0
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	100.0
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	100.0
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	100.0
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	100.0
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	100.0
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	100.0
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	100.0
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	100.0
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	100.0
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	100.0
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	100.0
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	100.0
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	100.0
4hr3_A	415	Putative acyl-COA dehydrogenase; ssgcid, seattle s	100.0
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	100.0
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	100.0
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	100.0
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	100.0
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	100.0
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	100.0
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	100.0
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	100.0
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	100.0
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	100.0
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	100.0
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	100.0
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	99.97
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	99.96
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	99.94
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	99.92
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	99.89
4g5e_A	517	2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct	99.66

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*

Probab=100.00  E-value=2.9e-51  Score=383.53  Aligned_cols=287  Identities=77%  Similarity=1.232  Sum_probs=251.6

Q ss_pred             cccCCCCCccchhccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHH
Q 022844            2 TIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEY   81 (291)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~   81 (291)
                      ..+++..|.-.-.+.++.+++.++.+....++..++...+|+...|++.|++.+++|++++++.+++|+++++.|...+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~r~f~~~~~~p~~~~~   81 (436)
T 2ix5_A            2 AVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTEY   81 (436)
T ss_dssp             ---------------CCSSSSSCCCCHHHHCCSSCCTTSCCCCCSCTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             cchhhhhhhccccccchhhcCCChhhhhhhccccCCCCCCCCcccchhhcCCCCCHHHHHHHHHHHHHHHhhCChhhHHH
Confidence            34444444444556778888888888876677777778899998899999999999999999999999999999988877


Q ss_pred             HHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHH
Q 022844           82 WEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL  160 (291)
Q Consensus        82 d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l  160 (291)
                      ++.+.+|.++|++|++.||+++ +| +|||.|+++.+.+.++|++++++++++.++.+|+.++...|..+|+++||++||
T Consensus        82 ~~~~~~p~~~~~~l~e~Gl~~l~~p-e~GG~G~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l  160 (436)
T 2ix5_A           82 WEKAEFPFHITPKLGAMGVAGGSIK-GYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYL  160 (436)
T ss_dssp             HHHTCCCGGGHHHHHTTTCTTTTCC-STTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHcCCCcCcCC-CCCCCCCCHHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHH
Confidence            7888999999999999999999 88 999999999999999999999999888766666556667889999999999999


Q ss_pred             HHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeE
Q 022844          161 PSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT  240 (291)
Q Consensus       161 ~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~  240 (291)
                      |++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+..||+++|+|++++++++++|+||++.|||+
T Consensus       161 ~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a~~Ad~~lv~Ar~~~~~~~~~flV~~~~pGv~  240 (436)
T 2ix5_A          161 PSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK  240 (436)
T ss_dssp             HHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEEETTTSSEEEEEEETTCTTEE
T ss_pred             HHHhCCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCCCCCcccCEEEEEEEECCCCcEEEEEEECCCCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999987546799999999999999


Q ss_pred             EeccCCccCccccceeeEEEeeeEeCCCCCcCCCCcHHHHHHHHHhhcc
Q 022844          241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVRLLCSK  289 (291)
Q Consensus       241 ~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~g~~~~~~~~~~~r~  289 (291)
                      +.+.++++|++++++++|.|+||+||++++||+.+|+..++..++..|.
T Consensus       241 v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~g~~~~~~~l~~~r~  289 (436)
T 2ix5_A          241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRV  289 (436)
T ss_dssp             EEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTCSSHHHHHHHHHHHHH
T ss_pred             eeccccccCCCcCCceeEEeccEEECHHHcCCccccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988889888888888775

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.7e-48  Score=361.53  Aligned_cols=244  Identities=36%  Similarity=0.631  Sum_probs=229.8

Q ss_pred             CCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCC-hHHHHHHHhCcccCC-cccCCCCCCccHHHHHH
Q 022844           43 PCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAI  120 (291)
Q Consensus        43 ~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~  120 (291)
                      ...+||+.|++.++++++++++.+++|+.+++.|.+.+.++.+.+| .++|++|++.||+++ + ++|||.|+++.+++.
T Consensus        18 ~~~~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~   96 (403)
T 3sf6_A           18 RGADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHL-KGYGCAGMSAVAYGL   96 (403)
T ss_dssp             CCHHHHHTCGGGSCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTCSSTTS-CSTTCCCCCHHHHHH
T ss_pred             CCCcchhccCCCCCHHHHHHHHHHHHHHHHhcChhHHHHHhcCCCCHHHHHHHHHHCCCCcccc-hhhCCCCCCHHHHHH
Confidence            3455888999999999999999999999999999988889999999 999999999999999 9 999999999999999


Q ss_pred             HHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEE
Q 022844          121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILE  200 (291)
Q Consensus       121 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~Ln  200 (291)
                      ++|++++++++++..+.+|..++...|..+|+++||++|||++++|++++|+++|||++|||+..++|+|++++|||+||
T Consensus        97 v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~ln  176 (403)
T 3sf6_A           97 ACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILT  176 (403)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEE
T ss_pred             HHHHHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEE
Confidence            99999999998887776776566778999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCCcHHHH
Q 022844          201 GQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDT  280 (291)
Q Consensus       201 G~K~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~g~~~~  280 (291)
                      |+|.||||+..||+++|+|+++  +|+++|+||++.|||++.+.|+++|+|++++++|.|+||+||++++||+++|+...
T Consensus       177 G~K~~is~a~~Ad~~~v~ar~~--~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~  254 (403)
T 3sf6_A          177 GTKMWITNGSVADVAVVWARTD--EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATSLGAP  254 (403)
T ss_dssp             EEEEEEETGGGCSEEEEEEEET--TEEEEEEEETTSTTEEEEECCSCSSCTTSCEEEEEEEEEEEEGGGBCTTCCSTHHH
T ss_pred             EEEEeecCCcccCEEEEEEEeC--CceEEEEEECCCCCeEecCCCCccCCCCCceeEEEEccEEEcHHHccCCChhHHHH
Confidence            9999999999999999999986  47999999999999999999999999999999999999999999999987799999


Q ss_pred             HHHHHhhcc
Q 022844          281 SKVRLLCSK  289 (291)
Q Consensus       281 ~~~~~~~r~  289 (291)
                      +..++..|+
T Consensus       255 ~~~l~~~r~  263 (403)
T 3sf6_A          255 LRCLNEARF  263 (403)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888775

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*

Probab=100.00  E-value=4.3e-48  Score=357.00  Aligned_cols=240  Identities=35%  Similarity=0.495  Sum_probs=222.5

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 022844           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (291)
Q Consensus        50 ~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~  128 (291)
                      .|++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++
T Consensus         2 ~m~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~   81 (387)
T 2d29_A            2 GLWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYY   81 (387)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence            478889999999999999999999999888888899999999999999999999 9999999999999999999999999


Q ss_pred             CCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccC
Q 022844          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN  208 (291)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~  208 (291)
                      ++++++.+..|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  161 (387)
T 2d29_A           82 DGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQ  161 (387)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCC
Confidence            99888766666445667889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC-------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHH
Q 022844          209 STFADVLVIFARNTTT-------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT  280 (291)
Q Consensus       209 ~~~a~~~lv~a~~~~~-------~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~  280 (291)
                      +..||+++|+|+++++       .++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||+. +|+..+
T Consensus       162 ~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~  241 (387)
T 2d29_A          162 GSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDV  241 (387)
T ss_dssp             TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHH
T ss_pred             CCcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHH
Confidence            9999999999998632       26999999999999999999999999999999999999999999999974 689888


Q ss_pred             HHHHHhhcc
Q 022844          281 SKVRLLCSK  289 (291)
Q Consensus       281 ~~~~~~~r~  289 (291)
                      +..++..|+
T Consensus       242 ~~~l~~~r~  250 (387)
T 2d29_A          242 LRVLDGGRI  250 (387)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887775

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A

Probab=100.00  E-value=5.8e-49  Score=363.89  Aligned_cols=244  Identities=34%  Similarity=0.567  Sum_probs=221.6

Q ss_pred             CCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHH
Q 022844           46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAE  124 (291)
Q Consensus        46 ~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~  124 (291)
                      +|++.|++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+
T Consensus        10 ~~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~ee   89 (396)
T 3ii9_A           10 DDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIARE   89 (396)
T ss_dssp             TSTTCGGGGSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHH
T ss_pred             CcccccCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHH
Confidence            4778899999999999999999999999999988889999999999999999999999 999999999999999999999


Q ss_pred             HHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeee
Q 022844          125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKR  204 (291)
Q Consensus       125 l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~  204 (291)
                      +++++++++..+.+|+.++...|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.
T Consensus        90 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~  169 (396)
T 3ii9_A           90 VERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKM  169 (396)
T ss_dssp             HHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEE
T ss_pred             HHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEE
Confidence            99999988776666655555678999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCEEEEEEEeC--CCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCCcHHHHHH
Q 022844          205 WIGNSTFADVLVIFARNT--TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK  282 (291)
Q Consensus       205 ~it~~~~a~~~lv~a~~~--~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~g~~~~~~  282 (291)
                      ||||+..||+++|.|+++  +.+++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||+++|+...+.
T Consensus       170 ~vs~a~~Ad~~~v~a~~~~~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~~~g~~~~~~  249 (396)
T 3ii9_A          170 WITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFT  249 (396)
T ss_dssp             EEETGGGCSEEEEEEEEEETTEEEEEEEEEETTCTTEECCBCCCCSSCTTSCEEEEEEEEEEEEGGGBCTTCCSTHHHHH
T ss_pred             eECCCccCCEEEEEEEecCCCCCceEEEEEecCCCCeEeccccccccCCcCCeeEEEEccEEECHHHccCCChHHHHHHH
Confidence            999999999999999985  223589999999999999999999999999999999999999999999988889999988


Q ss_pred             HHHhhcc
Q 022844          283 VRLLCSK  289 (291)
Q Consensus       283 ~~~~~r~  289 (291)
                      .++..|.
T Consensus       250 ~l~~~r~  256 (396)
T 3ii9_A          250 CLNSARY  256 (396)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888774

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}

Probab=100.00  E-value=3.7e-48  Score=358.84  Aligned_cols=242  Identities=32%  Similarity=0.602  Sum_probs=228.1

Q ss_pred             CCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 022844           45 ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (291)
Q Consensus        45 ~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e  123 (291)
                      .+|+++|++.++++++++++.+++|+.+++.|.+.+.++.+.+|.++|++|++.||+++ + ++|||.|+++.+++.++|
T Consensus        16 ~~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~e   94 (399)
T 3swo_A           16 PLELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHL-QGYGCAGTNAVSYGLACM   94 (399)
T ss_dssp             HHHHHTGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTTHHHHHHHHTCTTTTS-CSTTCCCCCHHHHHHHHH
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHHCCCCcCCh-hhhCCCCCCHHHHHHHHH
Confidence            35888999999999999999999999999999988888999999999999999999999 9 999999999999999999


Q ss_pred             HHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeee
Q 022844          124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQK  203 (291)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K  203 (291)
                      ++++++++++..+.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|
T Consensus        95 el~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K  174 (399)
T 3swo_A           95 ELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTK  174 (399)
T ss_dssp             HHHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEE
T ss_pred             HHHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEE
Confidence            99999998877676675566788999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCCcHHHHHHH
Q 022844          204 RWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV  283 (291)
Q Consensus       204 ~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~g~~~~~~~  283 (291)
                      .||||+..||+++|+|+++  +|+++|+||++.|||++.+.|+++|+|++++++|.|+||+||++++||+++|+..++..
T Consensus       175 ~~vs~a~~Ad~~~v~a~~~--~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~  252 (399)
T 3swo_A          175 MWITNGNLADVATVWAQTD--DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPLAEGLSAPLSC  252 (399)
T ss_dssp             EEEETTTTCSEEEEEEBCT--TSCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTTCCSTHHHHHH
T ss_pred             EeECCCCccCEEEEEEEeC--CceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCCChhHHHHHHH
Confidence            9999999999999999986  46999999999999999999999999999999999999999999999987799988888


Q ss_pred             HHhhcc
Q 022844          284 RLLCSK  289 (291)
Q Consensus       284 ~~~~r~  289 (291)
                      ++..|.
T Consensus       253 l~~~r~  258 (399)
T 3swo_A          253 LNEARF  258 (399)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887774

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}

Probab=100.00  E-value=8.7e-48  Score=356.89  Aligned_cols=260  Identities=29%  Similarity=0.432  Sum_probs=218.8

Q ss_pred             cCCCCCccchhccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHH
Q 022844            4 HSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE   83 (291)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~   83 (291)
                      |...|..++...-.++|++.+                         .|++.+++|++++++.+++|+++++.|...+.|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~e~~~l~~~~r~~~~~~~~p~~~~~d~   57 (404)
T 2jif_A            3 HHHHHSSGVDLGTENLYFQSM-------------------------APLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDE   57 (404)
T ss_dssp             ----------------------------------------------CCTTCCCHHHHHHHHHHHHHHHHHTGGGHHHHHH
T ss_pred             ccccccchhhhhhhHHhcccc-------------------------cccCCCCHHHHHHHHHHHHHHHHhCcccHHHHhh
Confidence            444566777777777777733                         1334478999999999999999999998888888


Q ss_pred             hCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHH
Q 022844           84 KAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPS  162 (291)
Q Consensus        84 ~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~  162 (291)
                      .+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++++++++.+.+|..++..+|..+|+++||++|||+
T Consensus        58 ~~~~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~  137 (404)
T 2jif_A           58 NSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQ  137 (404)
T ss_dssp             HTCCCHHHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            89999999999999999999 99999999999999999999999999988877666655566788999999999999999


Q ss_pred             HhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeCC---CCCeEEEEEeCCCCCe
Q 022844          163 LAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT---TNQINGYLVKKDAPGL  239 (291)
Q Consensus       163 l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~~---~~~~~~flV~~~~~Gv  239 (291)
                      +++|. ++++++|||++|||+..++|+|++++|||+|||+|.||||+..||+++|+|++++   ..++++|+||++.|||
T Consensus       138 ~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~~is~a~~Ad~~~v~ar~~~~~~~~g~~~flV~~~~pGv  216 (404)
T 2jif_A          138 LTTEK-VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGL  216 (404)
T ss_dssp             HHHTC-CEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEESCGGGGGGGEEEEEEETTCTTE
T ss_pred             HhCCC-cceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEEeecCCcccCEEEEEEEeCCCCCCCceEEEEEecCCCCe
Confidence            99986 7899999999999999999999999999999999999999999999999999853   2468999999999999


Q ss_pred             EEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844          240 TVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK  289 (291)
Q Consensus       240 ~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~  289 (291)
                      ++.+.++++|++++++++|.||||+||++++||+ ++|+..++..++.+|+
T Consensus       217 ~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~  267 (404)
T 2jif_A          217 HIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRI  267 (404)
T ss_dssp             EECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHH
T ss_pred             EeccCcccccCCCCceEEEEEccEEECHHHcCCCCCchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987 4689888888887774

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}

Probab=100.00  E-value=9e-48  Score=354.65  Aligned_cols=242  Identities=35%  Similarity=0.634  Sum_probs=220.6

Q ss_pred             CcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHH
Q 022844           47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI  125 (291)
Q Consensus        47 d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l  125 (291)
                      |.+.|++.++++++++++.+++|+++++.|...+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++
T Consensus         3 ~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel   82 (385)
T 2eba_A            3 DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYEL   82 (385)
T ss_dssp             CTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCGGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHhCCccHHHHHHhCCCCHHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHH
Confidence            455678889999999999999999999999888888889999999999999999999 9999999999999999999999


Q ss_pred             HccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCC-CCCceEEEEeCCEEEEEeeee
Q 022844          126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA-SALNTTATKVEGGWILEGQKR  204 (291)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~-~~~~t~a~~~~~g~~LnG~K~  204 (291)
                      ++++++++..+.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+ ..++|+|++++|||+|||+|.
T Consensus        83 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~  162 (385)
T 2eba_A           83 ERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKM  162 (385)
T ss_dssp             HHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEE
T ss_pred             HHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeee
Confidence            9999998877766655556788899999999999999999999999999999999999 899999999999999999999


Q ss_pred             cccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCCcHHHHHHHH
Q 022844          205 WIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVR  284 (291)
Q Consensus       205 ~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~g~~~~~~~~  284 (291)
                      ||||+..||+++|.|++++. .+++|+||++.|||++.+.|+++|++++++++|.|+||+||++++|..++|+..++..+
T Consensus       163 ~~s~~~~Ad~~~v~a~~~~g-~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~l~~~~g~~~~~~~l  241 (385)
T 2eba_A          163 WITNGNLAHLAVIWAKDEGG-EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAPLSCL  241 (385)
T ss_dssp             EEETTTTCSEEEEEEECC----EEEEEEETTSTTEEEEECCSBSSSCSSCEEEEEEEEEEEEGGGBCTTCCSTHHHHHHH
T ss_pred             ccCCCcccCEEEEEEEeCCC-cEEEEEEeCCCCCeEecccccccccccCceeEEEEccEEEcHHHccCCCchHHHHHHHH
Confidence            99999999999999998632 38999999999999999999999999999999999999999999995567998888888


Q ss_pred             Hhhcc
Q 022844          285 LLCSK  289 (291)
Q Consensus       285 ~~~r~  289 (291)
                      +..|+
T Consensus       242 ~~~r~  246 (385)
T 2eba_A          242 TQARF  246 (385)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*

Probab=100.00  E-value=1e-47  Score=356.32  Aligned_cols=243  Identities=22%  Similarity=0.285  Sum_probs=223.0

Q ss_pred             CcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHH
Q 022844           47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI  125 (291)
Q Consensus        47 d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l  125 (291)
                      +.-.|++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|++
T Consensus        18 ~~~~M~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel   97 (403)
T 3p4t_A           18 GPGSMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICEEM   97 (403)
T ss_dssp             -----CTTSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHH
Confidence            344588889999999999999999999999999899999999999999999999999 9999999999999999999999


Q ss_pred             HccCCcc-hhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeee
Q 022844          126 ARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKR  204 (291)
Q Consensus       126 ~~~~~~~-~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~  204 (291)
                      +++++++ ++.+..+..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~  177 (403)
T 3p4t_A           98 HYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKT  177 (403)
T ss_dssp             HHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEE
T ss_pred             HHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEEEEE
Confidence            9999988 665666655667789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCEEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHH
Q 022844          205 WIGNSTFADVLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS  281 (291)
Q Consensus       205 ~it~~~~a~~~lv~a~~~~--~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~  281 (291)
                      ||||+..||+++|+|++++  .+++++|+||++.|||++.+.++++|++++++++|.||||+||++++||+. +|+..++
T Consensus       178 ~vs~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~  257 (403)
T 3p4t_A          178 YITSGVRADYVVTAARTGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIA  257 (403)
T ss_dssp             EEETTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHH
T ss_pred             EecCCcccCEEEEEEEeCCCCCCceEEEEEeCCCCCeEecCCCCcccCCCCCeeEEEEcceEecHHHcCCCCCchHHHHH
Confidence            9999999999999999864  257999999999999999999999999999999999999999999999874 6899888


Q ss_pred             HHHHhhcc
Q 022844          282 KVRLLCSK  289 (291)
Q Consensus       282 ~~~~~~r~  289 (291)
                      ..++..|+
T Consensus       258 ~~l~~~r~  265 (403)
T 3p4t_A          258 AAFVAERV  265 (403)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887775

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=8e-48  Score=355.95  Aligned_cols=238  Identities=31%  Similarity=0.426  Sum_probs=216.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~  129 (291)
                      |++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|++++++
T Consensus        15 m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~~   94 (393)
T 3pfd_A           15 ELFQLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVD   94 (393)
T ss_dssp             -------CHHHHHHHHHHHHHHHTGGGHHHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHhCchHHHHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHHHhhC
Confidence            67789999999999999999999999998899999999999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~  209 (291)
                      +++++++..+ .++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus        95 ~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~  173 (393)
T 3pfd_A           95 CSASLIPAVN-KLGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNG  173 (393)
T ss_dssp             HHHHHHHHHH-HHTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             chHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEEecCC
Confidence            9988755554 355567889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHH
Q 022844          210 TFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRL  285 (291)
Q Consensus       210 ~~a~~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~  285 (291)
                      ..||+++|+|+++++   +++++|+||++.|||++.+.++++|++++++++|.||||+||++++||+ ++|+..++..++
T Consensus       174 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~g~~~~~~~l~  253 (393)
T 3pfd_A          174 GKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLD  253 (393)
T ss_dssp             TTCSEEEEEEESCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHH
T ss_pred             cccCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCCCCcccCCCCCceEEEEccEEEcHHHcCCCCCchHHHHHHHHH
Confidence            999999999998632   5799999999999999999999999999999999999999999999997 469999998888


Q ss_pred             hhcc
Q 022844          286 LCSK  289 (291)
Q Consensus       286 ~~r~  289 (291)
                      ..|.
T Consensus       254 ~~r~  257 (393)
T 3pfd_A          254 HTRP  257 (393)
T ss_dssp             TTHH
T ss_pred             HHHH
Confidence            8775

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=1.6e-47  Score=352.35  Aligned_cols=238  Identities=30%  Similarity=0.449  Sum_probs=221.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~  129 (291)
                      |++.++++++++++.+++|+++.+.|...+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++++
T Consensus         1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~   80 (379)
T 1ukw_A            1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC   80 (379)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence            56778999999999999999999999888888889999999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~  209 (291)
                      ++++..+..| .++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus        81 ~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~  159 (379)
T 1ukw_A           81 MGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNG  159 (379)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             chHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCC
Confidence            9888766666 466778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHH
Q 022844          210 TFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRL  285 (291)
Q Consensus       210 ~~a~~~lv~a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~  285 (291)
                      ..||+++|+|++++   .+++++|+||++.|||++.+.++++|++++++++|.||||+||++++||+. +|+..++..++
T Consensus       160 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~  239 (379)
T 1ukw_A          160 GEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLN  239 (379)
T ss_dssp             TTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHH
T ss_pred             CcCCEEEEEEEcCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHHHHHH
Confidence            99999999999853   247899999999999999999999999999999999999999999999874 68988888888


Q ss_pred             hhcc
Q 022844          286 LCSK  289 (291)
Q Consensus       286 ~~r~  289 (291)
                      ..|+
T Consensus       240 ~~r~  243 (379)
T 1ukw_A          240 KTRI  243 (379)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7774

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=1.8e-47  Score=352.41  Aligned_cols=239  Identities=29%  Similarity=0.400  Sum_probs=221.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCC---ccHHHHHHHHHHHH
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG---HSVTGAAIAIAEIA  126 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g---~~~~~~~~v~e~l~  126 (291)
                      |++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|   +++.+.+.++|+++
T Consensus         1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~   80 (383)
T 1buc_A            1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELA   80 (383)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHH
Confidence            56779999999999999999999999888888999999999999999999999 999999999   99999999999999


Q ss_pred             ccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeeeec
Q 022844          127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRW  205 (291)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~  205 (291)
                      ++|+++++.+..|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|+++ +|||+|||+|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~  160 (383)
T 1buc_A           81 KYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIF  160 (383)
T ss_dssp             HHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEE
T ss_pred             hhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEec
Confidence            9999888766666556677899999999999999999999999999999999999999999999999 999999999999


Q ss_pred             ccCCCCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHH
Q 022844          206 IGNSTFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTS  281 (291)
Q Consensus       206 it~~~~a~~~lv~a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~  281 (291)
                      |||+..||+++|+|++++   .+++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||+ ++|+..++
T Consensus       161 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~  240 (383)
T 1buc_A          161 ITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAM  240 (383)
T ss_dssp             EETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCTTBHHHHHH
T ss_pred             cCCCCcCCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCccccccccCCceeEEEEccEEeCHHHcCCCCCchHHHHH
Confidence            999999999999999863   24699999999999999999999999999999999999999999999997 46899888


Q ss_pred             HHHHhhcc
Q 022844          282 KVRLLCSK  289 (291)
Q Consensus       282 ~~~~~~r~  289 (291)
                      ..++..|+
T Consensus       241 ~~l~~~r~  248 (383)
T 1buc_A          241 MTLDGGRI  248 (383)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887764

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=4.5e-47  Score=350.18  Aligned_cols=237  Identities=28%  Similarity=0.409  Sum_probs=221.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 022844           52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (291)
Q Consensus        52 ~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~  130 (291)
                      ++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|+++++++
T Consensus        13 ~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~   92 (387)
T 3nf4_A           13 RLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWA   92 (387)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTTCH
T ss_pred             cccCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHhCc
Confidence            5668999999999999999999999998899999999999999999999999 999999999999999999999999999


Q ss_pred             cchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCC
Q 022844          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (291)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~  210 (291)
                      ++++.+..|. ++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+.
T Consensus        93 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~  171 (387)
T 3nf4_A           93 SVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGG  171 (387)
T ss_dssp             HHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred             hHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecccCCc
Confidence            9887776664 666789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeC-CCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhc
Q 022844          211 FADVLVIFARNT-TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCS  288 (291)
Q Consensus       211 ~a~~~lv~a~~~-~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r  288 (291)
                      .||+++|+|+++ +.+++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||+. .|+...+..++..|
T Consensus       172 ~Ad~~~v~a~~~~~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r  251 (387)
T 3nf4_A          172 KADFYTLFARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGR  251 (387)
T ss_dssp             TCSEEEEEEECC--CCCEEEEEEETTCTTEEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHHH
T ss_pred             ccCEEEEEEEeCCCCCceEEEEEECCCCCeEecCcccccccCCCCeeEEEEeeEEecHHHcCCCCCchHHHHHHHHHHHH
Confidence            999999999985 3467999999999999999999999999999999999999999999999974 68998888888777


Q ss_pred             c
Q 022844          289 K  289 (291)
Q Consensus       289 ~  289 (291)
                      +
T Consensus       252 ~  252 (387)
T 3nf4_A          252 L  252 (387)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*

Probab=100.00  E-value=1.8e-47  Score=353.30  Aligned_cols=239  Identities=31%  Similarity=0.440  Sum_probs=218.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~  129 (291)
                      |++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++++
T Consensus         2 ~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~   81 (391)
T 2vig_A            2 QSVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGC   81 (391)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCcccHHHHHhcCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhc
Confidence            45678999999999999999999999888888899999999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~  209 (291)
                      ++++..+..|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~  161 (391)
T 2vig_A           82 ASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNA  161 (391)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecCC
Confidence            98887666664355678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHH
Q 022844          210 TFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRL  285 (291)
Q Consensus       210 ~~a~~~lv~a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~  285 (291)
                      ..||+++|+|++++   ..++++|+||++.|||++.+.++++|+|++++++|.||||+||++++||+. +|+..++..++
T Consensus       162 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~  241 (391)
T 2vig_A          162 WEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLD  241 (391)
T ss_dssp             TTCSEEEEEEECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHH
T ss_pred             CcCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEECcEEECHHHcCCCCCchHHHHHHHHH
Confidence            99999999999853   237999999999999999999999999999999999999999999999974 68988888888


Q ss_pred             hhcc
Q 022844          286 LCSK  289 (291)
Q Consensus       286 ~~r~  289 (291)
                      ..|+
T Consensus       242 ~~r~  245 (391)
T 2vig_A          242 MGRI  245 (391)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7775

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=4.1e-47  Score=348.73  Aligned_cols=234  Identities=33%  Similarity=0.506  Sum_probs=218.1

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcc
Q 022844           54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC  132 (291)
Q Consensus        54 ~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~  132 (291)
                      .+++|++++++.+++|+.+++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++++++
T Consensus         2 ~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~   81 (372)
T 2dvl_A            2 TLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSV   81 (372)
T ss_dssp             -CCHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcHH
Confidence            37899999999999999999988888888889999999999999999999 99999999999999999999999999988


Q ss_pred             hhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCC
Q 022844          133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFA  212 (291)
Q Consensus       133 ~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a  212 (291)
                      +..+..|+.++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+..|
T Consensus        82 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~A  161 (372)
T 2dvl_A           82 AVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHA  161 (372)
T ss_dssp             HHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTC
T ss_pred             HHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCCCcC
Confidence            77666664466678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844          213 DVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK  289 (291)
Q Consensus       213 ~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~  289 (291)
                      |+++|+|++++  ++++|+||++.|||++.+.++++|++++++++|.||||+||++++||+ ++|+..++..++..|+
T Consensus       162 d~~~v~a~~~~--g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~  237 (372)
T 2dvl_A          162 HLYVVMARTEK--GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRV  237 (372)
T ss_dssp             SEEEEEEEETT--EEEEEEEETTCTTEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEeCC--CcEEEEEeCCCCCeEecCcccccccCcCCeeEEEECcEEeCHHHcCCCCCchHHHHHHHHHHHHH
Confidence            99999999864  799999999999999999999999999999999999999999999987 4689888888887775

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*

Probab=100.00  E-value=3.6e-47  Score=351.89  Aligned_cols=239  Identities=27%  Similarity=0.420  Sum_probs=221.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 022844           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (291)
Q Consensus        50 ~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~  128 (291)
                      .|++.++++++++++.+++|+++++.|...+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++
T Consensus        11 ~m~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~   90 (396)
T 1egd_A           11 GFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYG   90 (396)
T ss_dssp             EEECCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHhh
Confidence            477889999999999999999999999888888899999999999999999999 9999999999999999999999999


Q ss_pred             CCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccC
Q 022844          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN  208 (291)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~  208 (291)
                      ++++++.+ .|+.++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||
T Consensus        91 ~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  169 (396)
T 1egd_A           91 CTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITN  169 (396)
T ss_dssp             CHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred             CccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccC
Confidence            99888765 56556666788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHH
Q 022844          209 STFADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS  281 (291)
Q Consensus       209 ~~~a~~~lv~a~~~~~------~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~  281 (291)
                      +..||+++|+|+++++      .++++|+||++.|||++.+.++++|++++++++|.||||+||++++||+. +|+..++
T Consensus       170 ~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~  249 (396)
T 1egd_A          170 GGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAM  249 (396)
T ss_dssp             TTTCSEEEEEEECCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHHH
T ss_pred             CcccCEEEEEEEeCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHHHHH
Confidence            9999999999998642      46899999999999999999999999999999999999999999999874 6898888


Q ss_pred             HHHHhhcc
Q 022844          282 KVRLLCSK  289 (291)
Q Consensus       282 ~~~~~~r~  289 (291)
                      ..++..|+
T Consensus       250 ~~l~~~r~  257 (396)
T 1egd_A          250 GAFDKERP  257 (396)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887774

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=1.2e-46  Score=347.95  Aligned_cols=238  Identities=27%  Similarity=0.395  Sum_probs=219.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~  129 (291)
                      |++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++++
T Consensus        15 ~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~   94 (393)
T 1rx0_A           15 PSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGC   94 (393)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence            45568999999999999999999999888888889999999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~  209 (291)
                      ++++..+..|. ++...|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+
T Consensus        95 ~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~a  173 (393)
T 1rx0_A           95 TSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGA  173 (393)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             cchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecCC
Confidence            88877666664 56678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHh
Q 022844          210 TFADVLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLL  286 (291)
Q Consensus       210 ~~a~~~lv~a~~~~--~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~  286 (291)
                      ..||+++|+|++++  .+++++|+||++.|||++.+.+.++|++++++++|.||||+||++++||+ ++|+..++..++.
T Consensus       174 ~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~  253 (393)
T 1rx0_A          174 GESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNG  253 (393)
T ss_dssp             TTCSEEEEEEESSSSSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHH
T ss_pred             ccCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCchHHHHHHHHHH
Confidence            99999999999853  23689999999999999999999999999999999999999999999987 4689888888877


Q ss_pred             hcc
Q 022844          287 CSK  289 (291)
Q Consensus       287 ~r~  289 (291)
                      +|+
T Consensus       254 ~r~  256 (393)
T 1rx0_A          254 GRI  256 (393)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}

Probab=100.00  E-value=4.5e-47  Score=352.00  Aligned_cols=240  Identities=22%  Similarity=0.305  Sum_probs=221.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 022844           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (291)
Q Consensus        50 ~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~  128 (291)
                      .+++.++++++++++.+++|+++++.|...+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++
T Consensus        24 ~~~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~  103 (403)
T 3r7k_A           24 APEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAA  103 (403)
T ss_dssp             -CGGGGCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence            345568999999999999999999999988889999999999999999999999 9999999999999999999999998


Q ss_pred             -CCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeeccc
Q 022844          129 -DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG  207 (291)
Q Consensus       129 -~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it  207 (291)
                       +++++..+..++.++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|||
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs  183 (403)
T 3r7k_A          104 GGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFIT  183 (403)
T ss_dssp             TCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEE
T ss_pred             CCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEEccc
Confidence             7777655554555677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHH
Q 022844          208 NSTFADVLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVR  284 (291)
Q Consensus       208 ~~~~a~~~lv~a~~~~--~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~  284 (291)
                      |+..||+++|.|++++  .+++++|+||+++|||++.+.++++|++++++++|.||||+||++++||+ ++|+..++..+
T Consensus       184 ~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l  263 (403)
T 3r7k_A          184 SGVRADFVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQF  263 (403)
T ss_dssp             TTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTH
T ss_pred             CCccCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEecCcccccCCCCCCceEEEEeeEEECHHHcCCCCCchHHHHHHHH
Confidence            9999999999999864  24799999999999999999999999999999999999999999999997 46899888888


Q ss_pred             Hhhcc
Q 022844          285 LLCSK  289 (291)
Q Consensus       285 ~~~r~  289 (291)
                      +..|+
T Consensus       264 ~~~r~  268 (403)
T 3r7k_A          264 QAERL  268 (403)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87775

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.2e-46  Score=347.07  Aligned_cols=237  Identities=26%  Similarity=0.350  Sum_probs=217.8

Q ss_pred             CC-CCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 022844           51 FD-DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (291)
Q Consensus        51 ~~-~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~  128 (291)
                      |+ +.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++
T Consensus         5 m~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~   84 (385)
T 2pg0_A            5 MTARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKV   84 (385)
T ss_dssp             -CCTTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence            44 668999999999999999999999888888999999999999999999999 9999999999999999999999999


Q ss_pred             C-CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeeccc
Q 022844          129 D-ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG  207 (291)
Q Consensus       129 ~-~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it  207 (291)
                      + +++++.+  |..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|||
T Consensus        85 ~~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s  162 (385)
T 2pg0_A           85 GSSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFIT  162 (385)
T ss_dssp             CGGGHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEET
T ss_pred             CCchHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEeccc
Confidence            9 7776544  544556788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHH
Q 022844          208 NSTFADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTS  281 (291)
Q Consensus       208 ~~~~a~~~lv~a~~~~~-----~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~  281 (291)
                      |+..||+++|.|+++++     .++++|+||++.|||++.+.++++|++++++++|.||||+||++++||+ ++|+..++
T Consensus       163 ~~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~  242 (385)
T 2pg0_A          163 NGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLM  242 (385)
T ss_dssp             TTTTCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTCHHHHHH
T ss_pred             CCcccCEEEEEEEeCCccCCCCCceEEEEEeCCCCCeEecCCccccccCCCceEEEEEcceEEcHHHcCCCCCchHHHHH
Confidence            99999999999998632     2689999999999999999999999999999999999999999999997 46899888


Q ss_pred             HHHHhhcc
Q 022844          282 KVRLLCSK  289 (291)
Q Consensus       282 ~~~~~~r~  289 (291)
                      ..++..|+
T Consensus       243 ~~l~~~r~  250 (385)
T 2pg0_A          243 EKLQQERL  250 (385)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887775

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=9e-47  Score=349.02  Aligned_cols=237  Identities=27%  Similarity=0.406  Sum_probs=220.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCCh--HHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF--HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (291)
Q Consensus        53 ~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~--~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~  129 (291)
                      +.++++++++++.+++|+++++.|.+.+.|+.+.+|.  ++|++|++.||+++ +|++|||.|+++.+.+.++|++++++
T Consensus        11 ~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~   90 (394)
T 1ivh_A           11 NGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRAS   90 (394)
T ss_dssp             GTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhc
Confidence            4589999999999999999999998888888999999  99999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~  209 (291)
                      +++++.+..|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus        91 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~  170 (394)
T 1ivh_A           91 GAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNG  170 (394)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETG
T ss_pred             hhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCCC
Confidence            99887776665456678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHH
Q 022844          210 TFADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKV  283 (291)
Q Consensus       210 ~~a~~~lv~a~~~~~-----~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~  283 (291)
                      ..||+++|.|+++++     .++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||+ ++|+..++..
T Consensus       171 ~~Ad~~~v~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~  250 (394)
T 1ivh_A          171 PDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSG  250 (394)
T ss_dssp             GGCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHH
T ss_pred             CcCCEEEEEEEeCCcccCCCCCeEEEEEeCCCCCeEeccccccccCCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHHH
Confidence            999999999998633     3689999999999999999999999999999999999999999999987 4689888888


Q ss_pred             HHhhcc
Q 022844          284 RLLCSK  289 (291)
Q Consensus       284 ~~~~r~  289 (291)
                      ++..|+
T Consensus       251 l~~~r~  256 (394)
T 1ivh_A          251 LDLERL  256 (394)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887774

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=8.2e-47  Score=364.51  Aligned_cols=252  Identities=27%  Similarity=0.391  Sum_probs=224.3

Q ss_pred             ccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHh-CCCChHHHH
Q 022844           15 NARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK-AEFPFHVIP   93 (291)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~-~~~p~~~~~   93 (291)
                      .++++|+|+ +++.++++|.                    +++|++++++.+++|+++++.|...+.+.. ..+|+++|+
T Consensus         9 ~~~~~f~~~-~~~~~~~~~~--------------------~~~e~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~   67 (577)
T 2z1q_A            9 QKGGGWLLE-VPERVYTPED--------------------FDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMR   67 (577)
T ss_dssp             TSTTGGGTS-CCSCCCCGGG--------------------CCHHHHHHHHHHHHHHHTTTHHHHHHHHTTCGGGHHHHHH
T ss_pred             cccCccccC-CHHHcCCCCC--------------------CCHHHHHHHHHHHHHHhccCchhHHhhhcccCCCCHHHHH
Confidence            568899998 7776654221                    578999999999999999888875443322 378999999


Q ss_pred             HHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEE
Q 022844           94 KLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW  172 (291)
Q Consensus        94 ~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~  172 (291)
                      +|++.||+++ +|++|||.|++..+.+.++|++ +.+++++..+.+|++++..+|..+|+++||++|||++++|++++|+
T Consensus        68 ~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel-~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~  146 (577)
T 2z1q_A           68 KAGELGLLAIDVPEEYGGLDLPKVISTVVAEEL-SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAY  146 (577)
T ss_dssp             HHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHH-TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEE
T ss_pred             HHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH-hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEE
Confidence            9999999999 9999999999999999999999 7788888777777655566899999999999999999999999999


Q ss_pred             EecCCCCCCCCCCCceEEEEe--CCEEEEEeeeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCc
Q 022844          173 ALTEPAYGSDASALNTTATKV--EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGL  250 (291)
Q Consensus       173 a~tEp~~Gsd~~~~~t~a~~~--~~g~~LnG~K~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~  250 (291)
                      |+|||++|||+..++|+|+++  +++|+|||+|+||||+..||+++|+|++++ +++++|+||++.|||++.+.++++|+
T Consensus       147 alTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~it~a~~Ad~~~V~Ar~~g-~gis~flVp~~~pGv~v~~~~~~~G~  225 (577)
T 2z1q_A          147 CLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDG-EHFTAFLVERDTPGLSFGPEEKKMGI  225 (577)
T ss_dssp             ECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEETT-TEEEEEEEETTCTTEEECCCCCBSSC
T ss_pred             EecCCCCCCCcccCeeEEEEeCCCCEEEEEEEeeCCCCCCccCEEEEEEEeCC-CeeEEEEEeCCCCCeEecCCCCCCCC
Confidence            999999999999999999984  457999999999999999999999999864 67999999999999999999999999


Q ss_pred             cccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844          251 RIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK  289 (291)
Q Consensus       251 r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~  289 (291)
                      +++++++|.|+||+||.+++||+ ++|++.++..++.+|.
T Consensus       226 ~~~~~~~v~fddv~VP~~~llg~~g~g~~~~~~~l~~~R~  265 (577)
T 2z1q_A          226 KASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRY  265 (577)
T ss_dssp             TTSCEEEEEEEEEEEEGGGEESCTTCTHHHHHHHHHHHHH
T ss_pred             CCCceeEEEecceeccHHHccCCCCchHHHHHHHHHHHHH
Confidence            99999999999999999999987 5799999999998874

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*

Probab=100.00  E-value=3e-46  Score=345.23  Aligned_cols=241  Identities=35%  Similarity=0.558  Sum_probs=221.0

Q ss_pred             CcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHH
Q 022844           47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI  125 (291)
Q Consensus        47 d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l  125 (291)
                      |.+.|++.+++|++++++.+++|+++.+.|...+.++.+.+|.++|++|++.||+++ + ++|||.|+++.+.+.++|++
T Consensus         6 ~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~~~GG~g~~~~~~~~~~eel   84 (392)
T 1siq_A            6 DPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTI-KGYGCAGVSSVAYGLLAREL   84 (392)
T ss_dssp             STTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTC-EETTEECCCHHHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccH-HhhCCCCCCHHHHHHHHHHH
Confidence            455688889999999999999999999999888888888999999999999999999 9 99999999999999999999


Q ss_pred             HccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEEeee
Q 022844          126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEGQK  203 (291)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~LnG~K  203 (291)
                      ++++++++..+.++..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|+++  +|||+|||+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K  164 (392)
T 1siq_A           85 ERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTK  164 (392)
T ss_dssp             HTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEE
T ss_pred             HHhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEE
Confidence            99998877655555444456788999999999999999999999999999999999999999999999  9999999999


Q ss_pred             ecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCCcHHHHHHH
Q 022844          204 RWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV  283 (291)
Q Consensus       204 ~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~g~~~~~~~  283 (291)
                      .||||+..||+++|.|++++ +++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||+.+|+..++..
T Consensus       165 ~~vs~~~~Ad~~~v~a~~~~-g~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~  243 (392)
T 1siq_A          165 TWITNSPMADLFVVWARCED-GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC  243 (392)
T ss_dssp             EEEETGGGCSEEEEEEEETT-SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTCCSSHHHHHH
T ss_pred             EeecCCcccCEEEEEEEECC-CCEEEEEEeCCCCCeEeccccccccccCCceEEEEEccEEECHHHcCCcccCHHHHHHH
Confidence            99999999999999999864 35899999999999999999999999999999999999999999999887788888888


Q ss_pred             HHhhcc
Q 022844          284 RLLCSK  289 (291)
Q Consensus       284 ~~~~r~  289 (291)
                      ++..|+
T Consensus       244 l~~~r~  249 (392)
T 1siq_A          244 LNNARY  249 (392)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877764

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*

Probab=100.00  E-value=3.2e-46  Score=345.54  Aligned_cols=237  Identities=28%  Similarity=0.442  Sum_probs=220.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCC-hHHHHHHHhCcccCC-cccCCCCCCc--cHHHHHHHHHHHH
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGH--SVTGAAIAIAEIA  126 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~--~~~~~~~v~e~l~  126 (291)
                      |++.++++++++++.+++|+++.+.|.+.+.|+.+.+| .++|++|++.||+++ +|++|||.|+  +..+.+.++|+++
T Consensus         1 M~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela   80 (397)
T 3mpi_A            1 MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIA   80 (397)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHHH
Confidence            67789999999999999999999999999999999999 999999999999999 9999999999  9999999999999


Q ss_pred             ccCCcchhHHHHhhHHHHH-HHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeec
Q 022844          127 RVDASCSTFILVHSSLAML-TIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW  205 (291)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~-~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~  205 (291)
                      ++++++++.+..|. ++.. .|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|
T Consensus        81 ~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~  159 (397)
T 3mpi_A           81 RGSSALRVQLNMEV-LGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTW  159 (397)
T ss_dssp             HHCHHHHHHHHHHT-TTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEE
T ss_pred             hhCchHHHHHHHHH-HhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEEe
Confidence            99999888776663 4445 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCEEEEEEEeCC---CCCeEEEEE-eCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHH
Q 022844          206 IGNSTFADVLVIFARNTT---TNQINGYLV-KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT  280 (291)
Q Consensus       206 it~~~~a~~~lv~a~~~~---~~~~~~flV-~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~  280 (291)
                      |||+..||+++|.|++++   ..++++|+| |++.|||++ +.++++|++++++++|.|+||+||++++||.. +|+..+
T Consensus       160 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~~Gv~v-~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~  238 (397)
T 3mpi_A          160 ISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKT-SNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIV  238 (397)
T ss_dssp             EETTTTCSSEEEEEESCGGGGGGSEEEEEECTTTSTTEEE-EECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHH
T ss_pred             eCCCcccCEEEEEEEcCCCCCCCceEEEEEEcCCCCCeEe-ccCccccCcCCceeEEEEeeEEECHHHcCCCCCchHHHH
Confidence            999999999999999853   246999999 999999999 89999999999999999999999999999974 689988


Q ss_pred             HHHHHhhcc
Q 022844          281 SKVRLLCSK  289 (291)
Q Consensus       281 ~~~~~~~r~  289 (291)
                      +..++..|+
T Consensus       239 ~~~~~~~r~  247 (397)
T 3mpi_A          239 FGSLNHTRL  247 (397)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887775

>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=4.9e-46  Score=346.27  Aligned_cols=239  Identities=20%  Similarity=0.203  Sum_probs=209.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhC------------------CCChHHHHHHHhCcccCC-cccCCCCC
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA------------------EFPFHVIPKLGALRVAGG-TIKGYGCP  111 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~------------------~~p~~~~~~l~~~Gl~~~-~p~~~GG~  111 (291)
                      |++.++++++++++.+++|+++++.|...+.++..                  .+|.++|++|++.||+++ +|++|||.
T Consensus         5 M~~~~~~~~~~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~G~~~~~~P~~~GG~   84 (415)
T 4hr3_A            5 MDFAPSARAAELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELDSLKAKARAAGLWNLFLPDPELGG   84 (415)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHHHHTTCSSTTCCCTTTSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHHHHHHHHHhCCCcCcCCCHHHCCC
Confidence            78889999999999999999999888877665443                  266899999999999999 99999999


Q ss_pred             CccHHHHHHHHHHHHccCCcchhHHH-HhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCC-CCCCCCCCceE
Q 022844          112 GHSVTGAAIAIAEIARVDASCSTFIL-VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTT  189 (291)
Q Consensus       112 g~~~~~~~~v~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~-~Gsd~~~~~t~  189 (291)
                      |+++.+++.++|++++++.+...+.. .+...+...|..+|+++||++|||++++|+.++|+++|||+ +|||+..++|+
T Consensus        85 g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~~t~  164 (415)
T 4hr3_A           85 GLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAAT  164 (415)
T ss_dssp             CCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGCCCE
T ss_pred             CCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhCeeE
Confidence            99999999999999998754332211 12223346889999999999999999999999999999999 99999999999


Q ss_pred             EEEeCCEEEEEeeeecccCCCC--CCEEEEEEEeCCC----CCeEEEEEeCCCCCeEEeccCCccCccccc--eeeEEEe
Q 022844          190 ATKVEGGWILEGQKRWIGNSTF--ADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQ--NGDILLK  261 (291)
Q Consensus       190 a~~~~~g~~LnG~K~~it~~~~--a~~~lv~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~--~~~v~f~  261 (291)
                      |++++|||+|||+|.||||+..  ||+++|+|+++++    +++++|+||++.|||++.+.++++|+++++  +++|.|+
T Consensus       165 A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~~~v~fd  244 (415)
T 4hr3_A          165 AVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSFD  244 (415)
T ss_dssp             EEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEEEETTSTTEEEEEECCBTTBCCTTTCEEEEEEE
T ss_pred             EEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEEEEcCCCceEecCCCCccccCCCCCCeeEEEEc
Confidence            9999999999999999999966  9999999998632    579999999999999999999999999987  9999999


Q ss_pred             eeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844          262 KVFVPDEDRLPG-VNSFQDTSKVRLLCSK  289 (291)
Q Consensus       262 ~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~  289 (291)
                      ||+||++++||+ ++|+...+..++..|+
T Consensus       245 dv~Vp~~~~lg~~~~g~~~~~~~l~~~r~  273 (415)
T 4hr3_A          245 NVRLPADAFIAGPGKGFEIAQGRLGPGRV  273 (415)
T ss_dssp             EEEEEGGGBSSCTTCHHHHHHHHCSHHHH
T ss_pred             cEEECHHHcCCCCCchHHHHHHHHhHHHH
Confidence            999999999998 4689888888777664

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*

Probab=100.00  E-value=9.7e-46  Score=358.27  Aligned_cols=256  Identities=25%  Similarity=0.333  Sum_probs=226.1

Q ss_pred             hhccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHH----HHHHHHHHHHHhhccchHHHHHHhCCCC
Q 022844           13 DKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ----AVRMKVRECMEKEIAPIMAEYWEKAEFP   88 (291)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~----~l~~~~~~~~~~~~~p~~~~~d~~~~~p   88 (291)
                      ...++++|.|+++++.++++|..                   ++++++    ++++.+++|+.+.+.|.  +.|+...+|
T Consensus        23 ~~~~~~lf~g~~~~~~~~~~p~~-------------------l~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~p   81 (607)
T 2uxw_A           23 MSFAVGMFKGQLTTDQVFPYPSV-------------------LNEEQTQFLKELVEPVSRFFEEVNDPA--KNDALEMVE   81 (607)
T ss_dssp             CCHHHHHTTTCCCCTTTSSCCCC-------------------CCHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHTSCC
T ss_pred             ccHHHHhcCCCCCHHHhCCCCCC-------------------CCHHHHHHHHHHHHHHHHHHHhhcCHH--HhccccCCC
Confidence            34567888888888888765421                   345554    48899999999987653  346778999


Q ss_pred             hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 022844           89 FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN  167 (291)
Q Consensus        89 ~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~  167 (291)
                      +++|+++++.||+++ +|++|||.|++..+.+.+.|+++++++++++++..|.+++..+|..+|+++||++|||++++|+
T Consensus        82 ~~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~  161 (607)
T 2uxw_A           82 ETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGE  161 (607)
T ss_dssp             HHHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence            999999999999999 9999999999999999999999999998888777665555678899999999999999999999


Q ss_pred             ceeEEEecCCCCCCCCCCCceEEEEeC--CEEEEEeeeecccCCCCCCEEEEEEEeCC--------CCCeEEEEEeCCCC
Q 022844          168 TIACWALTEPAYGSDASALNTTATKVE--GGWILEGQKRWIGNSTFADVLVIFARNTT--------TNQINGYLVKKDAP  237 (291)
Q Consensus       168 ~~~~~a~tEp~~Gsd~~~~~t~a~~~~--~g~~LnG~K~~it~~~~a~~~lv~a~~~~--------~~~~~~flV~~~~~  237 (291)
                      +++|+++|||++|||+..++|+|++++  ++|+|||+|+||||+..||+++|+|++++        .+++++|+||++.|
T Consensus       162 ~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K~~is~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~~~  241 (607)
T 2uxw_A          162 TVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFG  241 (607)
T ss_dssp             SCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEEGGGS
T ss_pred             eEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEEeEEEeecCCcccCEEEEEEEecCCCcccCCCCCceEEEEEeCCCC
Confidence            999999999999999999999999974  47999999999999999999999999842        24689999999999


Q ss_pred             CeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844          238 GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK  289 (291)
Q Consensus       238 Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~  289 (291)
                      ||++.+.++++|++++++++|.|+||+||.+++||+ ++|++.++.+++.+|+
T Consensus       242 Gv~v~~~~~~~G~rg~~t~~v~fddv~VP~~~llG~~g~G~~~~~~~l~~~Rl  294 (607)
T 2uxw_A          242 GITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRF  294 (607)
T ss_dssp             SEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHH
T ss_pred             CeEEecCccccCCCCCCeeEEEeccEEecHHHhcCCCCchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999997 4699999999998885

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}

Probab=100.00  E-value=1.4e-45  Score=356.29  Aligned_cols=233  Identities=27%  Similarity=0.455  Sum_probs=211.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhccchHHHHHHhC-CCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcc
Q 022844           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC  132 (291)
Q Consensus        55 l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~-~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~  132 (291)
                      ++++++++++.+++|+++++.|...+.++.+ .+|.++|+++++.||+++ +|++|||.|+++.+.+.++|++++++ +.
T Consensus        33 lt~eq~~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel~~~~-~~  111 (597)
T 3owa_A           33 FSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GF  111 (597)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTGGGHHHHTTTCHHHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHHGGGT-HH
T ss_pred             CCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCcCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHccc-hH
Confidence            7899999999999999999999887777655 678999999999999999 99999999999999999999999986 33


Q ss_pred             hhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeC--CEEEEEeeeecccCCC
Q 022844          133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILEGQKRWIGNST  210 (291)
Q Consensus       133 ~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~--~g~~LnG~K~~it~~~  210 (291)
                      +..+..|..++...|..+|+++||++|||++++|++++|+|+|||++|||+..++|+|++++  ++|+|||+|.||||+.
T Consensus       112 ~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K~~is~a~  191 (597)
T 3owa_A          112 AITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSA  191 (597)
T ss_dssp             HHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEEEEeCCCc
Confidence            44444555555567889999999999999999999999999999999999999999999864  4599999999999999


Q ss_pred             CCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844          211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK  289 (291)
Q Consensus       211 ~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~  289 (291)
                      .||+++|+|++++ +++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||+ ++|+..++..++.+|.
T Consensus       192 ~Ad~~lV~Art~~-~g~s~flV~~~~pGv~v~~~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~R~  270 (597)
T 3owa_A          192 FADVFIVYAKIDG-EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGRY  270 (597)
T ss_dssp             TCSEEEEEEEETT-TEEEEEEEETTSTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEEeCC-CceEEEEEeCCCCCeEEecccccccCCCCCceEEEEeceeecHHHhcCcccchHHHHHHhhHhHHH
Confidence            9999999999864 5799999999999999999999999999999999999999999999997 4699999999998875

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=3e-45  Score=335.64  Aligned_cols=223  Identities=22%  Similarity=0.271  Sum_probs=204.0

Q ss_pred             HHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHH
Q 022844           64 MKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSL  142 (291)
Q Consensus        64 ~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~  142 (291)
                      +.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++++++++.+.+|..+
T Consensus         2 ~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~   81 (366)
T 1r2j_A            2 PERDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMA   81 (366)
T ss_dssp             -CCHHHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhccccHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence            4578899999999888888899999999999999999999 999999999999999999999999999988766666445


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeC
Q 022844          143 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT  222 (291)
Q Consensus       143 ~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~  222 (291)
                      +...|. +|+++||++|||++++|+ +.|+++|||++|||+..++|+|++++|||+|||+|.||||+..||+++|+|+++
T Consensus        82 ~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~  159 (366)
T 1r2j_A           82 AWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQE  159 (366)
T ss_dssp             HHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCS
T ss_pred             HHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEEeC
Confidence            667788 999999999999999999 999999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHH-HHHHHhhcc
Q 022844          223 TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT-SKVRLLCSK  289 (291)
Q Consensus       223 ~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~-~~~~~~~r~  289 (291)
                      + +++++|+||++.|||++.+.|+++|+|++++++|.|+||+||++++||+. +|+..+ +..++..|+
T Consensus       160 ~-~g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~l~~~r~  227 (366)
T 1r2j_A          160 D-GSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRK  227 (366)
T ss_dssp             S-SCCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTSCTTTTTHHHHHHHHH
T ss_pred             C-CceEEEEEECCCCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCccHHHHHHHHhhHHHH
Confidence            4 37899999999999999999999999999999999999999999999874 688877 777777664

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*

Probab=100.00  E-value=2.4e-43  Score=330.41  Aligned_cols=238  Identities=20%  Similarity=0.259  Sum_probs=212.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHh----CCCC--hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK----AEFP--FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~----~~~p--~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e  123 (291)
                      |++.++++++++++.+++|+++++.|...+.++.    +.+|  .++|++|++.||+++ +|++|||.|+++.+.+.++|
T Consensus         2 M~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~e   81 (439)
T 2c12_A            2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE   81 (439)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence            6677999999999999999999999987665542    3455  899999999999999 99999999999999999999


Q ss_pred             HHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHh--cCCceeEEEecCCCCCC-----CCCCCceEEEEeCCE
Q 022844          124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA--QLNTIACWALTEPAYGS-----DASALNTTATKVEGG  196 (291)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~--~G~~~~~~a~tEp~~Gs-----d~~~~~t~a~~~~~g  196 (291)
                      ++++.+++++..+..|. ++...|..+|+++||++|||+++  +|+.++|+++|||++||     |+..++|+|++++||
T Consensus        82 ela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g  160 (439)
T 2c12_A           82 ELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNE  160 (439)
T ss_dssp             HHHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTE
T ss_pred             HHHhhChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCE
Confidence            99999999887666653 55567899999999999999999  69999999999999997     588889999999999


Q ss_pred             EEEEeeeecccCCC-----CCCEEEEEEEe-C----C-------CCCeEEEEEeCCCC------CeEEeccCCccCcccc
Q 022844          197 WILEGQKRWIGNST-----FADVLVIFARN-T----T-------TNQINGYLVKKDAP------GLTVTKIENKIGLRIV  253 (291)
Q Consensus       197 ~~LnG~K~~it~~~-----~a~~~lv~a~~-~----~-------~~~~~~flV~~~~~------Gv~~~~~~~~~G~r~~  253 (291)
                      |+|||+|.||||+.     .||+++|+|++ +    +       ..++++|+||++.|      ||++.+.++++|+|++
T Consensus       161 ~~lnG~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~pGv~~~~Gv~v~~~~~~~G~r~~  240 (439)
T 2c12_A          161 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITT  240 (439)
T ss_dssp             EEEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTC
T ss_pred             EEEEeEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCCCcccCCCceEeCCcccccccCCC
Confidence            99999999999997     89999999998 5    2       13689999999988      8889999999999999


Q ss_pred             ceeeEEEeeeEeCCCCCcCCC-CcHH-HHHHHHHhhcc
Q 022844          254 QNGDILLKKVFVPDEDRLPGV-NSFQ-DTSKVRLLCSK  289 (291)
Q Consensus       254 ~~~~v~f~~v~Vp~~~vlg~~-~g~~-~~~~~~~~~r~  289 (291)
                      ++++|.|+||+||++++||+. +|+. .++..++..|+
T Consensus       241 ~~~~v~fddv~VP~~~~lg~~~~g~~~~~~~~l~~~r~  278 (439)
T 2c12_A          241 SGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAA  278 (439)
T ss_dssp             CCCEEEEEEEEEEGGGBCSCTTHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEccEEecHHHcCCCCCccHHHHHHHHHHHHHH
Confidence            999999999999999999874 5888 88888887764

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}

Probab=100.00  E-value=7.3e-44  Score=333.78  Aligned_cols=238  Identities=19%  Similarity=0.255  Sum_probs=210.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHH----hC-CCC--hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHH
Q 022844           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE----KA-EFP--FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIA  121 (291)
Q Consensus        50 ~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~----~~-~~p--~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v  121 (291)
                      -|++.+++|++++++.+++|+++++.|...++++    .+ .+|  .++|++|++.||+++ +|++|||.|+++.+++.+
T Consensus         2 ~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v   81 (438)
T 3mkh_A            2 AIDFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAIL   81 (438)
T ss_dssp             CCBCCCCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHH
Confidence            3788899999999999999999999988766543    22 454  899999999999999 999999999999999999


Q ss_pred             HHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcC--CceeEEEecCCCCCC-----CCCCCceEEEEeC
Q 022844          122 IAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL--NTIACWALTEPAYGS-----DASALNTTATKVE  194 (291)
Q Consensus       122 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G--~~~~~~a~tEp~~Gs-----d~~~~~t~a~~~~  194 (291)
                      +|++++.++++++.+..+ .++...|..+|+++ |++|||++++|  +.++|+++|||++||     |+..++|+|++++
T Consensus        82 ~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g  159 (438)
T 3mkh_A           82 VEECYSVEPSAALTIFAT-GLGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEG  159 (438)
T ss_dssp             HHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEET
T ss_pred             HHHHHhhChhHHHHHHHh-hHHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeC
Confidence            999999998887655444 35556788899999 99999999997  589999999999998     6889999999999


Q ss_pred             CEEEEEeeeecccCCC-----CCCEEEEEEEeCC---------CCCeEEEEEeCCC-----CC-eEEeccCCccCccccc
Q 022844          195 GGWILEGQKRWIGNST-----FADVLVIFARNTT---------TNQINGYLVKKDA-----PG-LTVTKIENKIGLRIVQ  254 (291)
Q Consensus       195 ~g~~LnG~K~~it~~~-----~a~~~lv~a~~~~---------~~~~~~flV~~~~-----~G-v~~~~~~~~~G~r~~~  254 (291)
                      |||+|||+|.||||+.     .||+++|+|++++         .+++++|+||++.     || |++.+.++++|+|+++
T Consensus       160 ~g~~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~~~~pG~v~v~~~~~~~G~r~~~  239 (438)
T 3mkh_A          160 DEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVS  239 (438)
T ss_dssp             TEEEEEEEECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHHHHCTTSEEEEECCCCSSCTTCC
T ss_pred             CEEEEEeEEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccccCCCCcEEecCcCCCcCCcCCC
Confidence            9999999999999997     7999999999842         1469999999875     88 9999999999999999


Q ss_pred             eeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844          255 NGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK  289 (291)
Q Consensus       255 ~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~  289 (291)
                      +++|.|+||+||++++||+ ++|+..++..++..|+
T Consensus       240 ~~~v~fddv~VP~~~~lg~~~~g~~~~~~~l~~~r~  275 (438)
T 3mkh_A          240 GPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAV  275 (438)
T ss_dssp             CCEEEEEEEEEEGGGEEECTTTHHHHHHHHHHHHHH
T ss_pred             ceEEEECcEEECHHHcCCCCCchHHHHHHHHHHHHH
Confidence            9999999999999999987 4689988888888775

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.6e-43  Score=326.87  Aligned_cols=239  Identities=21%  Similarity=0.241  Sum_probs=200.3

Q ss_pred             cccCCCCCCHHHHHHHHHHHHHHHhhccchHH---HHHHh-----CC-----CChHHHHHHHhCcccCC-cccCCCCCCc
Q 022844           48 YYQFDDLLTSEEQAVRMKVRECMEKEIAPIMA---EYWEK-----AE-----FPFHVIPKLGALRVAGG-TIKGYGCPGH  113 (291)
Q Consensus        48 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~---~~d~~-----~~-----~p~~~~~~l~~~Gl~~~-~p~~~GG~g~  113 (291)
                      ...|++.++++++++++.+++|+++++.|...   +.++.     ..     ++.++|+++++.||+++ +|+   |.|+
T Consensus        16 ~~~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~---G~g~   92 (428)
T 2wbi_A           16 TTGQLFVQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLWNLFLPA---VSGL   92 (428)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHHHHHHHHHHTTCCSTTCHH---HHCC
T ss_pred             CccCCCCCCHHHHHHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCCCCeecCCC---CCCC
Confidence            33478889999999999999999999877665   44432     22     34789999999999999 888   7789


Q ss_pred             cHHHHHHHHHHHHccCCcc-hhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCC-CCCCCCCCceEEE
Q 022844          114 SVTGAAIAIAEIARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTAT  191 (291)
Q Consensus       114 ~~~~~~~v~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~-~Gsd~~~~~t~a~  191 (291)
                      ++.+.+.++|++++++.+. ++....++.++...|..+|+++||++|||++++|+.++|+++|||+ +|||+..+.|+|+
T Consensus        93 ~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~  172 (428)
T 2wbi_A           93 SHVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQ  172 (428)
T ss_dssp             CHHHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEEE
T ss_pred             CHHHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEEE
Confidence            9999999999999987532 2211122234566888999999999999999999999999999999 9999999999999


Q ss_pred             EeCCEEEEEeeeecccCCCC--CCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccccc---eeeEEEe
Q 022844          192 KVEGGWILEGQKRWIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQ---NGDILLK  261 (291)
Q Consensus       192 ~~~~g~~LnG~K~~it~~~~--a~~~lv~a~~~~~-----~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~---~~~v~f~  261 (291)
                      +++|||+|||+|.||||+..  ||+++|+|+++++     +++++|+||++.|||++.+.++++|+++++   +++|.|+
T Consensus       173 ~~~~g~~lnG~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd  252 (428)
T 2wbi_A          173 RDEDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHFN  252 (428)
T ss_dssp             EETTEEEEEEEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETTSTTEEEEEECCBTTBCCGGGCCEEEEEEE
T ss_pred             EeCCEEEEEeEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECCCCcEEecCCCCccccCCCCCCCeEEEEeC
Confidence            99999999999999999987  9999999998643     368999999999999999999999999984   9999999


Q ss_pred             eeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844          262 KVFVPDEDRLPG-VNSFQDTSKVRLLCSK  289 (291)
Q Consensus       262 ~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~  289 (291)
                      ||+||++++||+ ++|+...+..++..|+
T Consensus       253 dv~VP~~~~lg~~g~g~~~~~~~l~~~r~  281 (428)
T 2wbi_A          253 QVRVPATNLILGEGRGFEISQGRLGPGRI  281 (428)
T ss_dssp             EEEEEGGGBCSCTTCHHHHHHHHHHHHHH
T ss_pred             ceEECHHHhcCCccchHHHHHHHHHhHHH
Confidence            999999999987 4689888888887775

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}

Probab=100.00  E-value=3e-41  Score=316.17  Aligned_cols=226  Identities=20%  Similarity=0.290  Sum_probs=196.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCC-ccHHHHHHHHHHHHc
Q 022844           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG-HSVTGAAIAIAEIAR  127 (291)
Q Consensus        50 ~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g-~~~~~~~~v~e~l~~  127 (291)
                      .|++.++++++++++.+++|+. .+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.| .++.+++.++|++++
T Consensus        15 ~m~~~lt~e~~~l~~~~r~~~~-~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~~   93 (439)
T 3m9v_A           15 GLYAPVTPAGRVLLDRLAAHLP-RIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVAR   93 (439)
T ss_dssp             TTSSCSSHHHHHHHHHHHTTHH-HHHHHHHHHHHHTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH-HHhhhHHHHHhcCCCCHHHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHHHHh
Confidence            3888899999999999999997 4788888889999999999999999999999 999999999 899999999999999


Q ss_pred             cCCcchhHHHHhhHHHHHH--HHhcCCHHH---HHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEee
Q 022844          128 VDASCSTFILVHSSLAMLT--IALCGSEEQ---KQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQ  202 (291)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~--l~~~Gt~~q---k~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~  202 (291)
                      ++++++..+.+|......+  +..+|+++|   |++||+++++|+.++|+++|||++  |...+.|   +++|||+|||+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~--~~~~~~t---~~~~g~vlnG~  168 (439)
T 3m9v_A           94 ADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHT--AVTTLRP---DGAGGWLLSGR  168 (439)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTT--CCCEEEE---CSSSCEEEEEE
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCC--CCCceee---ccCCEEEEEeE
Confidence            9998887666664433333  446799999   999999999999999999999975  4333332   26788999999


Q ss_pred             eecccCCCCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcC--C-CCc
Q 022844          203 KRWIGNSTFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP--G-VNS  276 (291)
Q Consensus       203 K~~it~~~~a~~~lv~a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg--~-~~g  276 (291)
                      |+||||+..||+++|.|++++   ..++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||  + +.|
T Consensus       169 K~~~s~a~~Ad~~~v~art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~~~~~~~~v~fddv~VP~~~~lg~~~~g~g  248 (439)
T 3m9v_A          169 KTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGAR  248 (439)
T ss_dssp             EEEETTGGGCSEEEECEEECC--CCCCEEEEEEETTCTTEEECCCCCCSSCTTSCCEEEEEEEEEECGGGEEECCC--CC
T ss_pred             EEeecCccccCEEEEEEEecCCCCCceeEEEEEECCCCCeEECCCcccCCcCCCCceeEEEeeeEcCHHHccCCCCCCch
Confidence            999999999999999999863   2469999999999999999999999999999999999999999999998  4 345


Q ss_pred             HHHHH
Q 022844          277 FQDTS  281 (291)
Q Consensus       277 ~~~~~  281 (291)
                      +...+
T Consensus       249 ~~~~~  253 (439)
T 3m9v_A          249 NDAVL  253 (439)
T ss_dssp             CGGGH
T ss_pred             HHHHh
Confidence            54333

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}

Probab=100.00  E-value=1.1e-41  Score=314.87  Aligned_cols=232  Identities=20%  Similarity=0.274  Sum_probs=199.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCC-ccHHHHHHHHHHHHcc
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG-HSVTGAAIAIAEIARV  128 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g-~~~~~~~~v~e~l~~~  128 (291)
                      |...++++++++++.+++|+.+ +.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.| .++.+++.++|+++++
T Consensus         5 ~~~~lt~e~~~~~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~~   83 (395)
T 3mxl_A            5 LRAPLTPAGRTVVDLLAGVIPR-ISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEA   83 (395)
T ss_dssp             SSSCCSHHHHHHHHHHTTTHHH-HHHHHHHHHHHTCCCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHTT
T ss_pred             cccCCCHHHHHHHHHHHHHHHH-HhhchHHHhhhCCCCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHhh
Confidence            5567899999999999999974 788888899999999999999999999999 999999999 8999999999999999


Q ss_pred             CCcchhHHHHhhHHHHHHH--HhcCCHHHH---HHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeee
Q 022844          129 DASCSTFILVHSSLAMLTI--ALCGSEEQK---QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQK  203 (291)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l--~~~Gt~~qk---~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K  203 (291)
                      ++++++.+.+|...+..++  ..+|+++||   ++|||++++|+.++|+++|||++|+  ..++|   +++|||+|||+|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~t---~~~~g~~lnG~K  158 (395)
T 3mxl_A           84 DASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELHS---DGAGGWLLSGRK  158 (395)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEEE---CSSSCEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceEE---ecCCEEEEeeEE
Confidence            9998877666654444333  367999999   9999999999999999999998653  22222   267889999999


Q ss_pred             ecccCCCCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcC--C-CCcH
Q 022844          204 RWIGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP--G-VNSF  277 (291)
Q Consensus       204 ~~it~~~~a~~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg--~-~~g~  277 (291)
                      .||||+..||+++|.|+++++   .++++|+||++.|||++.+.|+++|+|++++++|.|+||+||++++||  . +.|+
T Consensus       159 ~~is~a~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~g~  238 (395)
T 3mxl_A          159 VLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARR  238 (395)
T ss_dssp             EEETTGGGCSEECCCEEEECTTSCEEEECCCEETTCTTEEEECCCCBSSCTTSCCEEEEEEEEEECGGGCCEEEESSCCC
T ss_pred             EEecCccccCEEEEEEEeCCCCCCCceEEEEEECCCCceEeCCCchhcCCCCCCcceEEEcceEcCHHHhcCCCCCCccH
Confidence            999999999999999998642   358999999999999999999999999999999999999999999998  3 4466


Q ss_pred             HHHHHHHHhhc
Q 022844          278 QDTSKVRLLCS  288 (291)
Q Consensus       278 ~~~~~~~~~~r  288 (291)
                      ...+..++..|
T Consensus       239 ~~~~~~~~~~r  249 (395)
T 3mxl_A          239 DAVLAGQTVSS  249 (395)
T ss_dssp             TTHHHHHHHHH
T ss_pred             HHHHhhhHHHH
Confidence            54443333333

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}

Probab=100.00  E-value=2e-38  Score=294.83  Aligned_cols=205  Identities=15%  Similarity=0.138  Sum_probs=179.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 022844           52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (291)
Q Consensus        52 ~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~  130 (291)
                      ++.++++++++++.+++|+.+ +.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++++
T Consensus        15 ~~~~~~~~~~l~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~   93 (414)
T 2or0_A           15 ENLYFQGMGRVLDRIEVVAEE-IRGQAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDG   93 (414)
T ss_dssp             --------CHHHHHHHHTHHH-HHHHHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHHCH
T ss_pred             cCCCCccHHHHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHhhCh
Confidence            445788999999999999986 888888888899999999999999999999 999999999999999999999999999


Q ss_pred             cchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCC
Q 022844          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (291)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~  210 (291)
                      ++++.+..+. ++...|..+|+++||++|+|   +|+.++|+++| |         .|+|++++|||+|||+|.||||+.
T Consensus        94 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~  159 (414)
T 2or0_A           94 ASGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVDGGYVLKGRWSFSSGTD  159 (414)
T ss_dssp             HHHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEETTEEEEEEEEEEETTGG
T ss_pred             HHHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEECCeEEEEeeEeccCCCc
Confidence            8887665553 56678889999999999998   79989999987 4         589999999999999999999999


Q ss_pred             CCCEEEEEEEeCC---CC---CeEEEEEeCCCCCeEEe-ccCCccCccccceeeEEEeeeEeCCCCCcCC
Q 022844          211 FADVLVIFARNTT---TN---QINGYLVKKDAPGLTVT-KIENKIGLRIVQNGDILLKKVFVPDEDRLPG  273 (291)
Q Consensus       211 ~a~~~lv~a~~~~---~~---~~~~flV~~~~~Gv~~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~  273 (291)
                      .||+++|+|++++   ..   ++++|+||++  ||++. +.|+++|++++++++|.||||+||++++||.
T Consensus       160 ~Ad~~~v~a~~~~~~g~~~~~g~~~flV~~~--gv~v~~~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~  227 (414)
T 2or0_A          160 HCQWAFLGAMVGDGEGGIATPSSLHVILPRT--DYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNA  227 (414)
T ss_dssp             GCSEEEEEEEECC-----CCCSEEEEEEEGG--GCEEETTCCCBSSCGGGCCEEEEEEEEEEEGGGEEEH
T ss_pred             hhhEEEEEEEecCCCCCcccceeEEEEEEhh--hcEEecCCCccccCcccCCCcEEEccEEecHHHeecc
Confidence            9999999999852   22   7899999987  89999 8999999999999999999999999999974

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A

Probab=100.00  E-value=1.4e-36  Score=280.50  Aligned_cols=196  Identities=15%  Similarity=0.185  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHh
Q 022844           61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVH  139 (291)
Q Consensus        61 ~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~  139 (291)
                      ++++.+++|+.+ +.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++|+++++.+..+
T Consensus        11 ~l~~~~~~~~~~-~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~   89 (394)
T 2rfq_A           11 EVMQRLDALLPT-LRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSII   89 (394)
T ss_dssp             HHHHHHHHHHHH-HHHTHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHHHH
Confidence            588999999975 888888888899999999999999999999 999999999999999999999999999888765555


Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEE
Q 022844          140 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA  219 (291)
Q Consensus       140 ~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a  219 (291)
                       .++...|..+|+++||++|+|   +|+.+.|+++| |         .|+|++++|||+|||+|.||||+..||+++|+|
T Consensus        90 -~~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a  155 (394)
T 2rfq_A           90 -GVHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGG  155 (394)
T ss_dssp             -HHHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEETTEEEEEEEEEEETTGGGCSEEEEEE
T ss_pred             -HHHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeCCeEEEeeeEeccCCCcccceEEEee
Confidence             356678889999999999998   79989999987 4         589999999999999999999999999999999


Q ss_pred             EeCCCC---CeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC
Q 022844          220 RNTTTN---QINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG  273 (291)
Q Consensus       220 ~~~~~~---~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~  273 (291)
                      ++++++   ++++|+||++  ||++.+.|+++|++++++++|.||||+||++++||.
T Consensus       156 ~~~~~g~~~~~~~flV~~~--gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~  210 (394)
T 2rfq_A          156 PVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSF  210 (394)
T ss_dssp             EEEETTEEEEEEEEEEEGG--GCEEECCCCBSSCGGGCCEEEEEEEEEEEGGGEEEH
T ss_pred             eecCCCCCCceeEEEEEhh--hcEEeCCccccccccCCCCceEEcceEcChHHhccc
Confidence            983222   6899999987  899999999999999999999999999999999974

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*

Probab=100.00  E-value=1.4e-36  Score=283.01  Aligned_cols=197  Identities=17%  Similarity=0.167  Sum_probs=178.0

Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHH
Q 022844           60 QAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILV  138 (291)
Q Consensus        60 ~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~  138 (291)
                      +++++.+++|+. .+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++++++++.+..
T Consensus        38 ~~l~~~~r~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~  116 (422)
T 2jbr_A           38 VSMLEKIQQILP-QIAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSL  116 (422)
T ss_dssp             CCHHHHHHHHHH-HHHHTHHHHHHHTSCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHhhHHHHHcCCCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence            358899999987 5788888888899999999999999999999 99999999999999999999999999988876555


Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEE
Q 022844          139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIF  218 (291)
Q Consensus       139 ~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~  218 (291)
                      + .++..+|..+|+++||++|+|+   |+.+.|+++| |         .|+|++++|||+|||+|.||||+..||+++|.
T Consensus       117 ~-~~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~  182 (422)
T 2jbr_A          117 L-CTHSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVEGGIILNGDYGWSSGCDHAEYAIVG  182 (422)
T ss_dssp             H-HHHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEETTEEEEEEEEEEETTGGGCSEEEEE
T ss_pred             H-HHHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeCCEEEEeeeEeeecCCccccEEEEE
Confidence            4 4566788999999999999986   8889999987 4         57899999999999999999999999999999


Q ss_pred             EEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC
Q 022844          219 ARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG  273 (291)
Q Consensus       219 a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~  273 (291)
                      |++++   ..++++|+||++  ||++.+.|+++|++++++++|.|+||+||++++||.
T Consensus       183 a~~~~~~g~~g~~~flV~~~--gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~  238 (422)
T 2jbr_A          183 FNRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKA  238 (422)
T ss_dssp             EEEECTTSCEEEEEEEEEGG--GCEEECCCCBSSSGGGCCEEEEEEEEEEEGGGEEEH
T ss_pred             EEecCCCCCceeEEEEEEcC--ceEEeCCccccCcCCCCCCcEEEeeEEecHHHeecc
Confidence            99853   236899999987  899999999999999999999999999999999975

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*

Probab=100.00  E-value=9.8e-34  Score=276.74  Aligned_cols=208  Identities=23%  Similarity=0.285  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhHH
Q 022844           57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI  136 (291)
Q Consensus        57 ~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~  136 (291)
                      +|+.++++.+++|+++..... ...+....++++.|+.+++.|+++.+|+++|+   +..+...+.|+++   .+++  +
T Consensus        29 ~e~~~lr~~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~l~~~p~e~G~---~~~~~~~v~e~~~---~~~~--~   99 (659)
T 1w07_A           29 RHAFEVSDRIARLVASDPVFE-KSNRARLSRKELFKSTLRKCAHAFKRIIELRL---NEEEAGRLRHFID---QPAY--V   99 (659)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGC-CTTTTSSCHHHHHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHC---CCCH--H
T ss_pred             hHHHHHHHHHHHHHhcCcccc-cCCccCCChHHHHHHHHHHHHHHHHhHHHhCC---CchHHHHHHHHhc---cchh--h
Confidence            789999999999998763221 11112235678899999998888778888873   4566666666664   3333  4


Q ss_pred             HHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eeeecccC-
Q 022844          137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGN-  208 (291)
Q Consensus       137 ~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~it~-  208 (291)
                      .+|..++...|..+|+++||++|||++++|++++|+|+|||++|||+..++|+|+++  +|||+||     |+|+||+| 
T Consensus       100 ~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K~~is~~  179 (659)
T 1w07_A          100 DLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGL  179 (659)
T ss_dssp             HHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECCTTT
T ss_pred             hhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEEEeecCC
Confidence            456545667888999999999999999999999999999999999999999999998  6889999     99999999 


Q ss_pred             CCCCCEEEEEEEeCCC---CCeEEEEEeC-C------CCCeEEeccCCccC---ccccceeeEEEeeeEeCCCCCcCC
Q 022844          209 STFADVLVIFARNTTT---NQINGYLVKK-D------APGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPG  273 (291)
Q Consensus       209 ~~~a~~~lv~a~~~~~---~~~~~flV~~-~------~~Gv~~~~~~~~~G---~r~~~~~~v~f~~v~Vp~~~vlg~  273 (291)
                      +..||+++|+|+++.+   .|+++|+||. +      .|||++.+.++++|   +++++++.|.|+||+||.+++||+
T Consensus       180 a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~~v~fd~VrVP~~~lLg~  257 (659)
T 1w07_A          180 GKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMR  257 (659)
T ss_dssp             TTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGBCCS
T ss_pred             CCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCceEEEeccEEECHHHhcCC
Confidence            8999999999998532   3689999995 5      69999999999999   999999999999999999999984

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*

Probab=99.97  E-value=5e-31  Score=251.87  Aligned_cols=189  Identities=16%  Similarity=0.148  Sum_probs=158.8

Q ss_pred             hHHHHHHHhCcccCC-c--ccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhc
Q 022844           89 FHVIPKLGALRVAGG-T--IKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ  165 (291)
Q Consensus        89 ~~~~~~l~~~Gl~~~-~--p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~  165 (291)
                      +++++.+.+.||+++ .  |+++||.+.........    +..+........++. .+...|..+| ++||++|+|++++
T Consensus        89 ~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~~~~----~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~s  162 (541)
T 3djl_A           89 HLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLH----AQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLLS  162 (541)
T ss_dssp             HHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHHHHH----HHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHTC
T ss_pred             HHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHHHHH----HHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHhC
Confidence            678889999999999 7  68999654443333322    222332222222333 4556788899 9999999999999


Q ss_pred             CCc-------------eeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeeeecccCCCCCCEEEEEEEeCCCCCeEEEE
Q 022844          166 LNT-------------IACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYL  231 (291)
Q Consensus       166 G~~-------------~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~it~~~~a~~~lv~a~~~~~~~~~~fl  231 (291)
                      |++             +.|+++|||++|||+..++|+|+++ +|+|+|||+|+|+| +..||+++|+|+++  +|+++|+
T Consensus       163 ge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~--~Gis~fl  239 (541)
T 3djl_A          163 DRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA--GGLSCFF  239 (541)
T ss_dssp             SCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET--TEEEEEE
T ss_pred             CCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC--CceEEEE
Confidence            998             7899999999999999999999999 78899999999999 89999999999986  5899999


Q ss_pred             EeCCCC-----CeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844          232 VKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK  289 (291)
Q Consensus       232 V~~~~~-----Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~  289 (291)
                      ||++.|     ||++.+.|+++|+|++++++|.|+||+   +++||+ +.|+..++.+++.+|+
T Consensus       240 Vp~~~p~~~~~Gv~i~~~~~~~G~rgt~s~~v~fddv~---~~llG~~g~G~~~~~~~l~~~Rl  300 (541)
T 3djl_A          240 VPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAI---GWLLGLEGEGIRLILKMGGMTRF  300 (541)
T ss_dssp             EESBCTTSCBCSEEEEEECCCSSCTTSCEEEEEEEEEE---EEEESSTTCHHHHTHHHHHHHHH
T ss_pred             EecCCCCCCcCCeEEeeccccCCCcCCceeEEEEccce---eeeeecCCchHHHHHHHHHHHHH
Confidence            999988     999999999999999999999999995   789987 4699999999998885

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*

Probab=99.96  E-value=2.5e-29  Score=245.46  Aligned_cols=204  Identities=19%  Similarity=0.284  Sum_probs=156.6

Q ss_pred             CHHHHHHHHHHHHHHHhhccchHHHHHHhCCCCh-H-------HHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHc
Q 022844           56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF-H-------VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIAR  127 (291)
Q Consensus        56 ~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~-~-------~~~~l~~~Gl~~~~p~~~GG~g~~~~~~~~v~e~l~~  127 (291)
                      +++..++++.+++|+.+.  |..... .....+. +       ..+.|.+. +     +++||.+  .... .+++++..
T Consensus        26 ~~~~~~~r~~~~~~l~~~--p~~~~~-~~~~~~~~e~~~~~~~~~~~l~~~-~-----~~~~~~~--~~~~-~~~~~~~~   93 (661)
T 2ddh_A           26 SPENTRRRREIENLILND--PDFQHE-DYNFLTRSQRYEVAVKKSATMVKK-M-----REYGISD--PEEI-MWFKNSVH   93 (661)
T ss_dssp             SHHHHHHHHHHHHHHHTC--GGGCCS-CGGGSCHHHHHHHHHHHHHHHHHH-H-----HHTTCCC--HHHH-HHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHhcC--cccccC-CcCCCCHHHHHHHHHHHHHHHHHH-H-----HHcCCCC--chHH-HHHHHHhc
Confidence            467788899999998765  321100 0001111 1       12222232 1     5677765  2222 33666665


Q ss_pred             cCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----
Q 022844          128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----  200 (291)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----  200 (291)
                      ...+.+  +.+|..++...|..+||++||++|||++++|+.++|+|+|||++|||+..++|+|+++  +|||+||     
T Consensus        94 ~~~~~~--~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~~~  171 (661)
T 2ddh_A           94 RGHPEP--LDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVT  171 (661)
T ss_dssp             TTCCCT--THHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSST
T ss_pred             cchhhH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCCCC
Confidence            443333  3456556677899999999999999999999999999999999999999999999998  7899999     


Q ss_pred             eeeecccC-CCCCCEEEEEEEeCC---CCCeEEEEEeC-C------CCCeEEeccCCccCccccceeeEEEeeeEeCCCC
Q 022844          201 GQKRWIGN-STFADVLVIFARNTT---TNQINGYLVKK-D------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDED  269 (291)
Q Consensus       201 G~K~~it~-~~~a~~~lv~a~~~~---~~~~~~flV~~-~------~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~  269 (291)
                      |+|+||+| +..||+++|+|+++.   ..|+++|+||. +      .|||++.+.++++|++++.+++|.|+||+||.++
T Consensus       172 G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~Gl~g~~~~~v~Fd~VrVP~~~  251 (661)
T 2ddh_A          172 SIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPREN  251 (661)
T ss_dssp             TSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEGGG
T ss_pred             eEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCcccccCCCCcceEEEeccEEECHHH
Confidence            99999999 889999999999852   23689999994 4      7999999999999999999999999999999999


Q ss_pred             CcCC
Q 022844          270 RLPG  273 (291)
Q Consensus       270 vlg~  273 (291)
                      +||+
T Consensus       252 lLg~  255 (661)
T 2ddh_A          252 MLMK  255 (661)
T ss_dssp             BCCS
T ss_pred             hcCc
Confidence            9986

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1

Probab=99.94  E-value=2.4e-26  Score=217.08  Aligned_cols=143  Identities=17%  Similarity=0.194  Sum_probs=117.2

Q ss_pred             HHHHhcCC--HHHHHHHHHHHhcCCceeEEEecCCCCC--------CCC-CCCceEEEEeCCEEEEEeeeecccCCCCCC
Q 022844          145 LTIALCGS--EEQKQKYLPSLAQLNTIACWALTEPAYG--------SDA-SALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (291)
Q Consensus       145 ~~l~~~Gt--~~qk~~~l~~l~~G~~~~~~a~tEp~~G--------sd~-~~~~t~a~~~~~g~~LnG~K~~it~~~~a~  213 (291)
                      .++..+|+  ++||++|||++++|+++.|+|+|||++|        ||+ ..++ ++++++|||+|||+|+||||+..||
T Consensus       118 ~~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad  196 (490)
T 1u8v_A          118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSH  196 (490)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCS
T ss_pred             hHHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccC
Confidence            35668999  9999999999999999999999999874        775 3444 8889999999999999999999999


Q ss_pred             EEEEEEEeCC----CCCeEEEEEeCCCCCeEEec---cCCc----------cCc-cc-cceeeEEEeeeEeCCCCCc--C
Q 022844          214 VLVIFARNTT----TNQINGYLVKKDAPGLTVTK---IENK----------IGL-RI-VQNGDILLKKVFVPDEDRL--P  272 (291)
Q Consensus       214 ~~lv~a~~~~----~~~~~~flV~~~~~Gv~~~~---~~~~----------~G~-r~-~~~~~v~f~~v~Vp~~~vl--g  272 (291)
                      +++|+++++.    .+++++|+||+++|||++.+   .+.+          +|+ |. .++++|.||||+||.+++|  |
T Consensus       197 ~~iV~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~FddV~VP~e~vl~~g  276 (490)
T 1u8v_A          197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQ  276 (490)
T ss_dssp             EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEES
T ss_pred             EEEEEEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCccccccCCceEEEEECceEeCHHHccCCC
Confidence            9999998741    23489999999999999953   3433          666 63 5789999999999999998  5


Q ss_pred             CC-CcHHHHHHHHHhhc
Q 022844          273 GV-NSFQDTSKVRLLCS  288 (291)
Q Consensus       273 ~~-~g~~~~~~~~~~~r  288 (291)
                      +. .|+..++..+++.|
T Consensus       277 ~~~~g~~~~~~~~~~~r  293 (490)
T 1u8v_A          277 EYDFAGMMVERFAGYHR  293 (490)
T ss_dssp             CGGGHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHH
Confidence            53 46766665555544

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*

Probab=99.92  E-value=5.7e-25  Score=207.35  Aligned_cols=118  Identities=19%  Similarity=0.273  Sum_probs=100.8

Q ss_pred             CHHHHHHHHHHHhcCCceeEEEecCCCCC--------CCCCCCceEEE-EeCCEEEEEeeeecccCCCCCCEEEEEEEeC
Q 022844          152 SEEQKQKYLPSLAQLNTIACWALTEPAYG--------SDASALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIFARNT  222 (291)
Q Consensus       152 t~~qk~~~l~~l~~G~~~~~~a~tEp~~G--------sd~~~~~t~a~-~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~  222 (291)
                      .++||++|||++++|+++.|+|+|||++|        ||+. +.++++ +++|||+|||+|+|||| ..||+++|+|+++
T Consensus       122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~  199 (481)
T 2yyk_A          122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSIL  199 (481)
T ss_dssp             GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSC
T ss_pred             HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecC
Confidence            47999999999999999999999999976        6765 566664 78999999999999999 9999999999985


Q ss_pred             C----CCCeEEEEEeCCCCCeEEec--cCC--------ccCccc-cceeeEEEeeeEeCCCCCc
Q 022844          223 T----TNQINGYLVKKDAPGLTVTK--IEN--------KIGLRI-VQNGDILLKKVFVPDEDRL  271 (291)
Q Consensus       223 ~----~~~~~~flV~~~~~Gv~~~~--~~~--------~~G~r~-~~~~~v~f~~v~Vp~~~vl  271 (291)
                      .    .+++++|+||+++|||++..  .+.        ++|.|. .++++|.||||+||.+++|
T Consensus       200 ~~~~~~~~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl  263 (481)
T 2yyk_A          200 LQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVF  263 (481)
T ss_dssp             CCTTCGGGCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEE
T ss_pred             CCCCCCCeEEEEEEECCCCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHcc
Confidence            1    13489999999999999953  332        256664 6889999999999999998

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}

Probab=99.89  E-value=1.9e-23  Score=197.40  Aligned_cols=132  Identities=17%  Similarity=0.225  Sum_probs=107.1

Q ss_pred             cCC--HHHHHHHHHHHhcCCceeEEEecCCCC--------CCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEE
Q 022844          150 CGS--EEQKQKYLPSLAQLNTIACWALTEPAY--------GSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA  219 (291)
Q Consensus       150 ~Gt--~~qk~~~l~~l~~G~~~~~~a~tEp~~--------Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a  219 (291)
                      +|+  .+||++|||++++|+++.++|+|||++        |||+ .++++ .+++|||+|||+|.||||+..||+++|+|
T Consensus       127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~-~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a  204 (515)
T 3hwc_A          127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIV-EKTDDGIIVNGVKAVGTGIAFGDYMHIGC  204 (515)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEE-EECSSEEEEEEEEEEEESGGGCSEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEE-EEECCEEEEEEEEEEECCccccCEEEEEE
Confidence            565  678899999999999999999999986        5787 55443 45688999999999999999999999999


Q ss_pred             Ee-CC--CCCeEEEEEeCCCCCeEEeccCCccCc-----cc-----cceeeEEEeeeEeCCCCCc--CCC-CcHHHHHHH
Q 022844          220 RN-TT--TNQINGYLVKKDAPGLTVTKIENKIGL-----RI-----VQNGDILLKKVFVPDEDRL--PGV-NSFQDTSKV  283 (291)
Q Consensus       220 ~~-~~--~~~~~~flV~~~~~Gv~~~~~~~~~G~-----r~-----~~~~~v~f~~v~Vp~~~vl--g~~-~g~~~~~~~  283 (291)
                      ++ ++  .+.+++|+||+++|||++...+.++|.     +.     ..+++|.||||+||.+++|  |+. .|+..++..
T Consensus       205 ~t~~~~~~~~~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~~Ge~g~g~~~~~~~  284 (515)
T 3hwc_A          205 LYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRI  284 (515)
T ss_dssp             CCCTTCCGGGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEEESCTTGGGTHHHHH
T ss_pred             EecCCCCCCeEEEEEEECCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccCCCCccHHHHHHHHH
Confidence            97 32  123899999999999999876766662     22     2388999999999999999  664 477655433

>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}

Probab=99.66  E-value=3.7e-16  Score=147.78  Aligned_cols=135  Identities=15%  Similarity=0.110  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHhcCCceeEEEecCCCCCCC-----CCCCce-EEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeCC---C
Q 022844          154 EQKQKYLPSLAQLNTIACWALTEPAYGSD-----ASALNT-TATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT---T  224 (291)
Q Consensus       154 ~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd-----~~~~~t-~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~~---~  224 (291)
                      +...+|+..+..+.+..+.++|+|...-.     ...+-. ..+++++||+|||.|.|+||+..||+++|++++..   .
T Consensus       134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~~  213 (517)
T 4g5e_A          134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIPG  213 (517)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCG
T ss_pred             HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCCc
Confidence            55678999999999999999999973111     111112 34567899999999999999999999999998742   2


Q ss_pred             CCeEEEEEeCCCCCeEEeccCCccC---------cccc-ceeeEEEeeeEeCCCCCc--CCCC-cHHHHHHHHHhhc
Q 022844          225 NQINGYLVKKDAPGLTVTKIENKIG---------LRIV-QNGDILLKKVFVPDEDRL--PGVN-SFQDTSKVRLLCS  288 (291)
Q Consensus       225 ~~~~~flV~~~~~Gv~~~~~~~~~G---------~r~~-~~~~v~f~~v~Vp~~~vl--g~~~-g~~~~~~~~~~~r  288 (291)
                      ++.++|+||.++|||++...+..++         .++. ..+.|.||||+||.++|+  |+.+ ++...+..++..|
T Consensus       214 d~~~~F~VP~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~Ge~~~~~~~~~~~~~~~~  290 (517)
T 4g5e_A          214 DQIIFAATPVNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHLGNPEHAKLYPQRVFDWLH  290 (517)
T ss_dssp             GGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEESCTTHHHHHHHHHHHHHH
T ss_pred             cceEEEEEecCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHccccCChhHHHHHHHHHHHHHH
Confidence            4578999999999999854433333         3332 347899999999999987  6643 5566666565544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	291
d1ivha2	236	e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM	1e-47
d1ukwa2	227	e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge	2e-41
d1rx0a2	231	e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H	2e-41
d3mdea2	231	e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge	2e-40
d1siqa2	236	e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH	5e-40
d2d29a2	233	e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus	1e-39
d1jqia2	231	e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do	2e-37
d1buca2	232	e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do	2e-31
d1w07a3	271	e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai	2e-21
d2ddha3	267	e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II,	7e-21
d1r2ja2	210	e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro	8e-18
d1u8va2	275	e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase	1e-15
d2c12a2	259	e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox	3e-15

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (396), Expect = 1e-47
 Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 11/235 (4%)

Query: 52  DDL---LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGGTIK 106
           DD    L+ E++ +R  + + +++ +AP   E     EF        +LG L V G T  
Sbjct: 2   DDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAP 61

Query: 107 GYGCP-GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
                 G       + + EI+R   +       HS+L +  +   G+E QK+KYLP L  
Sbjct: 62  VQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLIS 121

Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT--- 222
              I   A++EP  GSD  ++   A K    +IL G K WI N   ADVL+++A+     
Sbjct: 122 GEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAA 181

Query: 223 --TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN 275
              +  I  ++V+K  PG + +K  +K+G+R     +++ +   +P  + L   N
Sbjct: 182 VPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHEN 236

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

 Score =  141 bits (355), Expect = 2e-41
 Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 3/220 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
           LT E++ ++   R   ++ I P+  EY EK E P+ VI KL  + +    I         
Sbjct: 5   LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGL 64

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
                + + E           I + S L +  + L G+EEQK+++L  L +   +A +AL
Sbjct: 65  KMLDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFAL 124

Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY---L 231
           +EP  GSDA+AL T A +    ++L G K WI N   A+ +V+FA      +  G    +
Sbjct: 125 SEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVALV 184

Query: 232 VKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           V++  PG    KI  K+G R     +++ + V VP E+RL
Sbjct: 185 VERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRL 224

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (354), Expect = 2e-41
 Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 2/219 (0%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
           L  E++  +    +   +E+AP MAE+ +K  FP  V+ K   L   G  I+        
Sbjct: 10  LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGL 69

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
                  I E      + +T  +   ++    I   G+EEQ+ K+ P L  +   A + L
Sbjct: 70  SRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCL 129

Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT--TNQINGYLV 232
           TEP  GSDA++L T+A K    +IL G K +I  +  +D+ V+  R        I+  +V
Sbjct: 130 TEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGPKGISCIVV 189

Query: 233 KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +K  PGL+  K E K+G        ++ +   VP  +R+
Sbjct: 190 EKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRI 228

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  138 bits (347), Expect = 2e-40
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 6/225 (2%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
           LT +++  +   R+   +EI P+ AEY    E+P  ++ +   L +    I         
Sbjct: 6   LTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGL 65

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
               +  I E      +     +  ++L  + + + G+ +Q++KYL  + +   +  + +
Sbjct: 66  GIIDSCLITEELAYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCV 125

Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADV------LVIFARNTTTNQIN 228
           TEP  GSD + + T A K    +I+ GQK WI N   A+            +   +    
Sbjct: 126 TEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFT 185

Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
           G++V+ D PG+ + + E  +G R      I+ + V VP E+ L G
Sbjct: 186 GFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTG 230

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 5e-40
 Identities = 85/233 (36%), Positives = 123/233 (52%), Gaps = 3/233 (1%)

Query: 46  SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
            D    ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TI
Sbjct: 5   QDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTI 64

Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
           KGYGC G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+
Sbjct: 65  KGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAK 124

Query: 166 LNTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTT 223
              + C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++     
Sbjct: 125 GELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVW-ARCE 183

Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS 276
              I G+L++K   GL+  +I+ K  LR    G I++  V VP+E+ LPG +S
Sbjct: 184 DGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASS 236

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  136 bits (342), Expect = 1e-39
 Identities = 73/225 (32%), Positives = 103/225 (45%), Gaps = 8/225 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
             +EE+ V    RE ++ E+AP  AE      FP+ ++ KL    V G  +         
Sbjct: 6   EGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGL 65

Query: 115 VTGAAIAIAEIARVDASCSTFI-LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
            T     + E               H+SLA   I L GSE QK+ +LP LA    +  W 
Sbjct: 66  STRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWG 125

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI-------FARNTTTNQ 226
           LTEP  GSDA+AL T A KVEGGW L G K++I   + A V V+        +       
Sbjct: 126 LTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQG 185

Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           I+ +   +   GL V + E K+GL       ++L+ +FVP+E  L
Sbjct: 186 ISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALL 230

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  130 bits (328), Expect = 2e-37
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 51  FDDL-LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKG-Y 108
           +  + L    Q +R   R+  EKE+ PI A+  ++  FP   + K+G L +    +    
Sbjct: 2   YQSVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEEL 61

Query: 109 GCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNT 168
              G      +IA+ EI+R  AS    + V++SL +  I   GS +QKQ+++      + 
Sbjct: 62  SGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDK 121

Query: 169 IACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
           I C+AL+EP  GSDA A +TTA +    W+L G K WI NS  A   V+FA    + Q  
Sbjct: 122 IGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNK 181

Query: 229 G---YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           G   +LV    PGLT+ K E+K+G+R     +++ +   +P E+ L
Sbjct: 182 GISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLL 227

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

 Score =  115 bits (287), Expect = 2e-31
 Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 8/225 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
           LT  +Q       +  EK++AP + E   K  +   +I +L +L + G   +        
Sbjct: 5   LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGD 64

Query: 115 VTG----AAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
             G      +A+ E+A+ DA  +  +    SL    I   G+E QK+K+L  L +   + 
Sbjct: 65  DGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLG 124

Query: 171 CWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
            + LTEP  G+DAS   T ATK + G + L G K +I N   AD+ ++FA    +   +G
Sbjct: 125 AFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHG 184

Query: 230 ---YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
              ++++   PG T  K E+K+G+   Q  +++ + V VP E+ L
Sbjct: 185 ITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENML 229

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.0 bits (220), Expect = 2e-21
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 21/172 (12%)

Query: 125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDAS 184
             R       ++ +H  + +  I   G+EEQ++K+L    ++  I C+A TE  +GS+  
Sbjct: 87  RLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQ 146

Query: 185 ALNTTATKVEGG-------WILEGQKRWIGNST-FADVLVIFARNTTTNQ---INGYLV- 232
            L TTAT                  K W G     +   V++AR  T  +   I+G++V 
Sbjct: 147 GLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQ 206

Query: 233 ------KKDAPGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPGVN 275
                     P +TV  I  K+G      + NG ++   V +P +  L  ++
Sbjct: 207 LRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLS 258

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.5 bits (216), Expect = 7e-21
 Identities = 43/244 (17%), Positives = 86/244 (35%), Gaps = 33/244 (13%)

Query: 54  LLTSEEQA-VRMKVRECMEKEIAPIMA----EYWEKAEFPFHVIPKLGALRVAGGTIKGY 108
           L  S E    R ++   +  +  P        +  +++     + K   +      +K  
Sbjct: 23  LDGSPENTRRRREIENLILND--PDFQHEDYNFLTRSQRYEVAVKKSATM------VKKM 74

Query: 109 GCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNT 168
              G S     +       V       + +H  + + T+    + EQ++++      L  
Sbjct: 75  REYGISDPEEIMWFKN--SVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEI 132

Query: 169 IACWALTEPAYGSDASALNTTATK-------VEGGWILEGQKRWIGN-STFADVLVIFAR 220
              +A TE  +G+    L TTAT        +     +   K W G     ++  ++ A+
Sbjct: 133 TGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQ 192

Query: 221 NTTTNQ---INGYLV-------KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 270
             T  +   ++ ++V        K  PG+TV  I  K G   + NG + +    +P E+ 
Sbjct: 193 LITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENM 252

Query: 271 LPGV 274
           L   
Sbjct: 253 LMKY 256

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

 Score = 77.9 bits (190), Expect = 8e-18
 Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 4/208 (1%)

Query: 70  MEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128
           +   +    AE+    E P  ++ +LGA  +    +   +G  G          A +  +
Sbjct: 6   LTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSL 65

Query: 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNT 188
            +S  + +      A     L  + ++        +       +  +E   GSD SA+ T
Sbjct: 66  CSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTSGKLAAVGF--SERQAGSDLSAMRT 123

Query: 189 TATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKI 248
                    +++G K W   + +AD LV+F            +V  D PG+ V ++    
Sbjct: 124 RVRLDGDTAVVDGHKVWTTAAAYADHLVVFGL-QEDGSGAVVVVPADTPGVRVERVPKPS 182

Query: 249 GLRIVQNGDILLKKVFVPDEDRLPGVNS 276
           G R   + D+ L +V VP    L G  +
Sbjct: 183 GCRAAGHADLHLDQVRVPAGAVLAGSGA 210

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

 Score = 72.7 bits (178), Expect = 1e-15
 Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 35/183 (19%)

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTI------ALCGSE--EQKQKYLPSLAQLNTIACW 172
               + +  ASC    +   +   +           G+   +   +YL  + + + I   
Sbjct: 88  MQRLLGQKTASCFQRCVGMDAFNAVFSTTYEIDQKYGTNYHKNFTEYLKYIQENDLIVDG 147

Query: 173 ALTEPAYGSDASA--------LNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
           A+T+P      +               K E G ++ G K     S  +   +I      T
Sbjct: 148 AMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMT 207

Query: 225 ----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNG---------------DILLKKVFV 265
               +    +    DA GL +         R ++ G                ++   VF+
Sbjct: 208 EADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFI 267

Query: 266 PDE 268
           P++
Sbjct: 268 PND 270

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

 Score = 71.8 bits (174), Expect = 3e-15
 Identities = 40/253 (15%), Positives = 75/253 (29%), Gaps = 36/253 (14%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYW------EKAEFPFHVIPKLGALRVAGGTI-KG 107
           L+  +   R   +      +    AEY        + +       +     +    +   
Sbjct: 5   LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIP 64

Query: 108 YGCPGHSVTGAAIAIAEIARVDA-SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
            G    S+   +I + E+  V+  +  T +     L  + +    S ++K        + 
Sbjct: 65  LGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEG 124

Query: 167 NTIACWALTEPAYGS-----DASALNTTATKVEGGWILEGQKRWIGNSTFAD-----VLV 216
             +A    +EP   +         L TTA KV   W++ G+K W  NS   D     +  
Sbjct: 125 EPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLAC 184

Query: 217 IFARNTTT------------NQINGYLVKKDAPGLT------VTKIENKIGLRIVQNGDI 258
           +  R +               QI   LV ++           +       G         
Sbjct: 185 VVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHT 244

Query: 259 LLKKVFVPDEDRL 271
              +  VP E+ L
Sbjct: 245 RFTEFHVPHENLL 257

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	291
d3mdea2	231	Medium chain acyl-CoA dehydrogenase, NM domains {P	100.0
d2d29a2	233	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	100.0
d1ukwa2	227	Medium chain acyl-CoA dehydrogenase, NM domains {T	100.0
d1jqia2	231	Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus	100.0
d1siqa2	236	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	100.0
d1ivha2	236	Isovaleryl-coa dehydrogenase, NM domains {Human (H	100.0
d1rx0a2	231	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	100.0
d1buca2	232	Butyryl-CoA dehydrogenase, NM domains {Megasphaera	100.0
d2c12a2	259	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	100.0
d1r2ja2	210	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	100.0
d2ddha3	267	Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {	100.0
d1w07a3	271	Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale	99.97
d1u8va2	275	4-hydroxybutyryl-CoA dehydratase AbfD, NM domains	99.89

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=5.1e-51  Score=348.62  Aligned_cols=222  Identities=27%  Similarity=0.473  Sum_probs=209.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~  129 (291)
                      |||.||+||+++++.+++|+++++.|.+.++|+++.+|+++|+++++.||+++ +|+++||.|++....+.+.|++++++
T Consensus         2 mdf~lseeq~~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l~~~~   81 (231)
T d3mdea2           2 FSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGC   81 (231)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHHcCCCCHHHHHHHHHhhhccccccccccCccccccccccchhhhcccc
Confidence            88999999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~  209 (291)
                      .+.+..+..+. .+...|..+|+++||++|||++++|++++|+|+|||++|||+..++|+|++++|||+|||+|+||||+
T Consensus        82 ~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~K~~vt~~  160 (231)
T d3mdea2          82 TGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNG  160 (231)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHTTSCCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             ccccccccccc-ccchhhhhcCcccccccccchhcCCceEEEEEecCCCCCCCccCCEEEEEEECCEEEEEEEEEEeCCc
Confidence            88887665543 56678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC
Q 022844          210 TFADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG  273 (291)
Q Consensus       210 ~~a~~~lv~a~~~~~------~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~  273 (291)
                      ..|++++|+|+++.+      .++++|+||+++|||++.+.++++|+|++++++|.|+||+||++++||+
T Consensus       161 ~~a~~~~~~a~t~~~~~~~~~~~~~~~lv~~d~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lG~  230 (231)
T d3mdea2         161 GKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTG  230 (231)
T ss_dssp             TTEEEEEEEEECCCCTTSCHHHHEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGBSSC
T ss_pred             hhccccceecccccccccccccceEEEEEeCCCCCeEEccCcccccCCCCCeEEEEEeeEEEcHHhEecC
Confidence            999999999998532      2589999999999999999999999999999999999999999999985

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.8e-50  Score=346.12  Aligned_cols=223  Identities=36%  Similarity=0.536  Sum_probs=212.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~  129 (291)
                      |-|.|++|++++++++|+|+++++.|.+.++|+.+.+|+++|+++++.||+++ +|+++||.|++..+++.+++++++.+
T Consensus         2 ~~F~l~~e~~~l~~~~r~f~~~~i~p~a~e~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~~~~~~~~   81 (233)
T d2d29a2           2 LWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYD   81 (233)
T ss_dssp             CTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHhCCCCHHHHHHHHHhccccccccccccccccchhhhccccccccccc
Confidence            56779999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~  209 (291)
                      .+.+..+.+|...+...+..+|+++||++|||++++|++++|+|+|||++|||+..++|+|++++|+|+|||+|+|||++
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vs~~  161 (233)
T d2d29a2          82 GALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQG  161 (233)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             cccccccccccccchHHHHHhChHHHHHhhCccccCCCEEEEEEecCCCCCCcccceeEEEEEECCEEEEecceeccccc
Confidence            98888877776666778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC-------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC
Q 022844          210 TFADVLVIFARNTTT-------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG  273 (291)
Q Consensus       210 ~~a~~~lv~a~~~~~-------~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~  273 (291)
                      ..||+++|+|++.+.       .++++|+||+++|||++.+.++++|+|++++++|.|+||+||++++||+
T Consensus       162 ~~a~~~~v~a~~~~~~~~~~~~~g~~~~lv~~~~~Gv~i~~~~~~~G~r~~~~~~v~f~~v~VP~~~llGe  232 (233)
T d2d29a2         162 SVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGE  232 (233)
T ss_dssp             TTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESS
T ss_pred             cccccccccccccCCccccccccCceEEEEEcCCCCcEECCcccccccCCCCeEEEEEeeEEECHHHcCcC
Confidence            999999999998532       3699999999999999999999999999999999999999999999986

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-50  Score=345.54  Aligned_cols=223  Identities=31%  Similarity=0.484  Sum_probs=209.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~  129 (291)
                      |||.||+||+++++.+++|+++++.|.+.++|+.+.+|+++|++|+++||+++ +|+++||.|.+..+.+.++|++++++
T Consensus         1 Mdf~Lteeq~~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~e~~~~~~   80 (227)
T d1ukwa2           1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC   80 (227)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHhcCCCCHHHHHHHHhhhhhhhccccccCcccccccccccchhhhcccc
Confidence            77889999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~  209 (291)
                      .+.+.+...+ ..+...|..+|+++||++||+++++|++++|+++|||++|+|+..++|+|++++|||+|||+|+||||+
T Consensus        81 ~~~~~~~~~~-~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~  159 (227)
T d1ukwa2          81 MGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNG  159 (227)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             cccccccccc-ccchhhhhccCCHHHHHHhccccccccccccccccCCCcCcCCcCceEEEEEECCEEEEEeEEeccCcc
Confidence            8777665544 456678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC
Q 022844          210 TFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV  274 (291)
Q Consensus       210 ~~a~~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~  274 (291)
                      ..||+++|.|++++.   .++++|+||+++|||++.+.++++|+|++++++|+|+||+||++++||+.
T Consensus       160 ~~Ad~~~v~a~~~~~~~~~g~~~f~V~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~llGeE  227 (227)
T d1ukwa2         160 GEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEE  227 (227)
T ss_dssp             TTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCT
T ss_pred             ccchhhccccccCCccCcCCcEEEEEeCCCCceEeccccCcccCCCCceEEEEEeeEEEcHHHccCCC
Confidence            999999999998642   46899999999999999999999999999999999999999999999863

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.8e-50  Score=345.78  Aligned_cols=224  Identities=33%  Similarity=0.493  Sum_probs=211.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~  129 (291)
                      |++.||+|++++++++|+|+++++.|.+.++|+.+.+|.++|++|+++||+++ +|++|||.|++..+.+.++|++++.+
T Consensus         3 ~~~~L~ee~~~l~~~~r~f~~~~i~p~a~~~d~~~~~p~e~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~   82 (231)
T d1jqia2           3 QSVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGC   82 (231)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSSSSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhChHHHHHHHhcCCCCHHHHHHHHHhCCcccccccccCCCchhHHHHHHHHHHHHhhc
Confidence            56679999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~  209 (291)
                      .+.+.....++..+...|..+|+++||++|||++++|++++|+++|||++|||+..++|+|++++++|+|||+|+||||+
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vt~~  162 (231)
T d1jqia2          83 ASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNS  162 (231)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSTTCCCCEEEECSSEEEEEEEEEEEETT
T ss_pred             cccccceeeeccchhhhhhhcCCHHHHHHHhCcccCCCccccceeccCCCCccCcccceEEEEECCEEEEeeeeeeEeec
Confidence            88887776676666789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC
Q 022844          210 TFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV  274 (291)
Q Consensus       210 ~~a~~~lv~a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~  274 (291)
                      ..++++++.|++++   ..++++|+||++.|||++.+.|+++|+|++++++|.|+||+||++++||++
T Consensus       163 ~~a~~~~v~a~~~~~~~~~g~~~~~Vp~~~~Gv~i~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lG~~  230 (231)
T d1jqia2         163 WEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEP  230 (231)
T ss_dssp             TTCSEEEEEEESCGGGGGGSEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESST
T ss_pred             ccccccccccccccccccCCceEEEEeCCCCCeEECCccCccccCCCceEEEEEeeEEEcHHHCCCCC
Confidence            99999999999753   356899999999999999999999999999999999999999999999875

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-50  Score=346.09  Aligned_cols=229  Identities=38%  Similarity=0.619  Sum_probs=212.3

Q ss_pred             CCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHH
Q 022844           46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEI  125 (291)
Q Consensus        46 ~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~~p~~~GG~g~~~~~~~~v~e~l  125 (291)
                      +|.+.||+.||+||+++++++|+|+++++.|.+.+.|+.+.+|.++|+++.+.|++++.++++||.|.+....+.+++++
T Consensus         5 ~d~~~~d~~Lteeq~~l~d~~r~f~~~~i~p~~~~~d~~~~~p~~~~~~~~~~g~~~~~i~~~gg~g~~~~~~~~~~e~~   84 (236)
T d1siqa2           5 QDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLAREL   84 (236)
T ss_dssp             TSTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTCEETTEECCCHHHHHHHHHHH
T ss_pred             CCcccccccCCHHHHHHHHHHHHHHHhhCChhHHHHHhcCCCCHHHHHHhhhhhcccccccccccCCcCHHHHHHHHHhh
Confidence            36778999999999999999999999999999999999999999999999999999994468899999999999999999


Q ss_pred             HccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEE--EEeCCEEEEEeee
Q 022844          126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQK  203 (291)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a--~~~~~g~~LnG~K  203 (291)
                      ++.+.+.+..+..++.++...+..+|+++||++|||++++|++++|+|+|||++|||...+.|++  ++++++|+|||+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~~vlnG~K  164 (236)
T d1siqa2          85 ERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTK  164 (236)
T ss_dssp             HTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEE
T ss_pred             hccccccccccccccccchhhhhhhcCHHHHHHhcCccCCCCEEecccCcCCCcccccccccccccccccccceEecccc
Confidence            99998887776666666778899999999999999999999999999999999999999888877  6678889999999


Q ss_pred             ecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCC
Q 022844          204 RWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN  275 (291)
Q Consensus       204 ~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~  275 (291)
                      +||||+..||+++|+||+++ +++++|+||++.|||++.+.+.++|+|++++++|.||||+||++++||+.+
T Consensus       165 ~~vt~a~~Ad~~~V~art~~-~~~~~flV~~~~~Gv~v~~~~~~~g~r~~~~~~l~fd~V~VP~~~llGg~~  235 (236)
T d1siqa2         165 TWITNSPMADLFVVWARCED-GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGAS  235 (236)
T ss_dssp             EEEETGGGCSEEEEEEEETT-SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTCC
T ss_pred             ccEecCCCceEEEEEecccC-CcceEEeecCCCCCeEeCCcccccccccCceEEEEEeeEEECHHHCcCCCC
Confidence            99999999999999999964 579999999999999999999999999999999999999999999998753

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-49  Score=338.25  Aligned_cols=222  Identities=29%  Similarity=0.462  Sum_probs=209.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCC--hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 022844           54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP--FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (291)
Q Consensus        54 ~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p--~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~  130 (291)
                      .||+||+++++.+++|+++++.|.+.+.|+.+.+|  +++|+++.++||+++ +|+++||.|++..+.+.++|+++++++
T Consensus         7 ~Lseeq~~l~d~~~~f~~~~~~p~~~~~d~~~~~~~~~e~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~   86 (236)
T d1ivha2           7 GLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASG   86 (236)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCccHHHHHHHHHHhhhccccccccccccCcccchhhhhhhhhhhhhh
Confidence            59999999999999999999999999999988887  589999999999999 999999999999999999999999999


Q ss_pred             cchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCC
Q 022844          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (291)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~  210 (291)
                      +++..+.+++.+++..|..+|+++||++||+++++|++++|+|+|||++|||+..+.|+|++++|||+|||+|+||||+.
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~gs~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~~  166 (236)
T d1ivha2          87 AVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGP  166 (236)
T ss_dssp             HHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETGG
T ss_pred             ccceeeeehhhhhHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCccccCeEEEEEECCEEEEEEEEEEEeCCc
Confidence            98888777766667789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCC-----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCC
Q 022844          211 FADVLVIFARNTT-----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN  275 (291)
Q Consensus       211 ~a~~~lv~a~~~~-----~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~  275 (291)
                      .|++++|+|+++.     .+++++|+||++.||+++.+.++++|+|++++++|+|+||+||++++||+.+
T Consensus       167 ~a~~~~v~a~~~~~~~~~~~g~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~fd~v~Vp~~~llGeen  236 (236)
T d1ivha2         167 DADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHEN  236 (236)
T ss_dssp             GCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTT
T ss_pred             cccccccccccccccccccCccEEEEEeCCCCceEeCCCcCcccCCCCceEEEEEeeEEEcHHHcCCCCC
Confidence            9999999999742     2469999999999999999999999999999999999999999999999864

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-48  Score=329.66  Aligned_cols=221  Identities=29%  Similarity=0.450  Sum_probs=208.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCc
Q 022844           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS  131 (291)
Q Consensus        53 ~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~  131 (291)
                      ..|++||+++++++++|+++++.|.+.++|+++.+|+++|++++++||+++ +|++|||.|.+..+.+.++|++++++.+
T Consensus         8 ~~Lt~e~~~l~~~~r~F~~~~i~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vp~~~GG~g~~~~~~~~~~e~l~~~~~~   87 (231)
T d1rx0a2           8 MGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTS   87 (231)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHcCCcccccchhhccccccchhhhhhHHHHhhhccc
Confidence            348999999999999999999999999999999999999999999999999 9999999999999999999999999998


Q ss_pred             chhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCC
Q 022844          132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTF  211 (291)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~  211 (291)
                      .+.++..++ .++..+..+|+++||++|++++.+|+..+++++|||+.|||+..++|+|++++|||+|||+|+||||+..
T Consensus        88 ~~~~~~~~~-~~~~~l~~~~~~e~~~~~l~~~~~g~~~~~~~~te~~~gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~  166 (231)
T d1rx0a2          88 TTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGE  166 (231)
T ss_dssp             HHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTT
T ss_pred             ccccccccc-chhhhhhhhcchhhhhhhcchhhcccccccccccccccCCCCCCceEEEEEECCEEEEEeEEccccCCCc
Confidence            888776664 6667899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEEeCCC--CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC
Q 022844          212 ADVLVIFARNTTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV  274 (291)
Q Consensus       212 a~~~lv~a~~~~~--~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~  274 (291)
                      ||+++|.|++++.  +++++|+||++.|||++.+.++++|+|++++++|.|+||+||++++||++
T Consensus       167 Ad~~~v~a~~~~~~~~~~~~~lv~~d~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~llG~E  231 (231)
T d1rx0a2         167 SDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSE  231 (231)
T ss_dssp             CSEEEEEEESSSSSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESST
T ss_pred             CCEEEEEEeecCCCCCceEEEEEeCCCCceEecCccCccccCCCceEEEEEccEEEcHHHEeCCC
Confidence            9999999998643  46999999999999999999999999999999999999999999999863

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

Probab=100.00  E-value=1.6e-46  Score=321.14  Aligned_cols=224  Identities=31%  Similarity=0.448  Sum_probs=203.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCC---CccHHHHHHHHHHHH
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCP---GHSVTGAAIAIAEIA  126 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~---g~~~~~~~~v~e~l~  126 (291)
                      |||.||++++++++.+++|+++++.|.+.++|+.+.+|+++|++++++|++++ +|++|||.   +........+.+.++
T Consensus         1 Mdf~lt~~~~~l~~~~r~f~~~~l~p~~~e~D~~~~~p~e~~~~l~~~G~~~~~vP~~~Gg~~~~~~~~~~~~~~~~~~~   80 (232)
T d1buca2           1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELA   80 (232)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHhhhcccccccccccccccccccchheehhhhhhh
Confidence            78899999999999999999999999999999999999999999999999999 99999955   456777888888888


Q ss_pred             ccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCE-EEEEeeeec
Q 022844          127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQKRW  205 (291)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g-~~LnG~K~~  205 (291)
                      ............+..++...+..+|+++||.+|++++++|++++++|+|||.+|+|...+.|+|++++|| |+|||+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~~~~G~~~~~~a~te~~~gs~~~~~~t~a~~~~dg~~~lnG~K~~  160 (232)
T d1buca2          81 KYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIF  160 (232)
T ss_dssp             HHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEE
T ss_pred             hccccccccccchhhhhhhHHHHhhhhhhhhhhhhhhhCCCEEecccccccccccccccceEEEEEcCCCEEEEEEEEee
Confidence            7666555544444556677899999999999999999999999999999999999999999999999885 999999999


Q ss_pred             ccCCCCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC
Q 022844          206 IGNSTFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV  274 (291)
Q Consensus       206 it~~~~a~~~lv~a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~  274 (291)
                      |||+..||+++|.|++++   ..++++|+||+++|||++.+.++++|+|++++++|+|+||+||++++||+.
T Consensus       161 vt~a~~ad~~~v~a~~~~~~~~~g~~~~lv~~~~~Gv~i~~~~~~~G~r~~~~~~l~f~~v~vp~~~llGee  232 (232)
T d1buca2         161 ITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEE  232 (232)
T ss_dssp             EETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCT
T ss_pred             ecccccceEEEEEEEecCCCCCceeEEEEEeCCCCceEeCCccCcccCCCCceEEEEEeeEEEcHHHccCCC
Confidence            999999999999999854   347899999999999999999999999999999999999999999999873

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=100.00  E-value=1.7e-46  Score=326.18  Aligned_cols=221  Identities=21%  Similarity=0.274  Sum_probs=196.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHh----C--CCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 022844           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK----A--EFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (291)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~----~--~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e  123 (291)
                      |||.|+++|+++++.+++|+++++.|...++++.    +  ..++++|+++++.||+++ +|++|||.|+++.+.+.++|
T Consensus         1 mdf~lt~eq~~l~~~~r~f~~~~~~p~~~~~~~~~d~~~~~~~~~e~~~~~~~~G~~~~~vPee~GG~g~~~~~~~~~~e   80 (259)
T d2c12a2           1 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE   80 (259)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCcchHHHhhhccccccccchHHHHHHHHHcCCCCcCCChHHhhccchhhhhhhhhh
Confidence            7888999999999999999999999977665432    2  347899999999999999 99999999999999999999


Q ss_pred             HHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhc--CCceeEEEecCCCCCCCCC-----CCceEEEEeCCE
Q 022844          124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ--LNTIACWALTEPAYGSDAS-----ALNTTATKVEGG  196 (291)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~--G~~~~~~a~tEp~~Gsd~~-----~~~t~a~~~~~g  196 (291)
                      ++++++++++..+..+ .++...+..+|+++||++||+++++  |++++|+++|||++|||+.     .++|+|++++++
T Consensus        81 el~~~~~~~~~~~~~~-~~~~~~i~~~g~~eq~~~~l~~~~~~~g~~~~a~a~TEp~~Gsd~~~~~~~~~~t~a~~~g~~  159 (259)
T d2c12a2          81 ELFAVEPATSITIVAT-ALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNE  159 (259)
T ss_dssp             HHHTTCCTTHHHHHHH-HHHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTE
T ss_pred             hccccccccccccccc-cchHHHHHHhhhccccccccccccccceeeeeeccccCCccccccccccccccccccccccch
Confidence            9999999998877665 4667788899999999999999997  7789999999999999974     588999999999


Q ss_pred             EEEEeeeecccCCC-----CCCEEEEEEEeCCC------------CCeEEEEEeCCCCC------eEEeccCCccCcccc
Q 022844          197 WILEGQKRWIGNST-----FADVLVIFARNTTT------------NQINGYLVKKDAPG------LTVTKIENKIGLRIV  253 (291)
Q Consensus       197 ~~LnG~K~~it~~~-----~a~~~lv~a~~~~~------------~~~~~flV~~~~~G------v~~~~~~~~~G~r~~  253 (291)
                      |+|||+|+||||+.     .||+++|+||++++            +++++|+||+++||      +.+...++++|+|++
T Consensus       160 ~vlnG~K~~vt~a~~~~~~~ad~~~v~ar~~~~~~~~~~~~~~~~~g~s~~lVp~~~~g~~~~~~~~~~~~~~~~G~~~~  239 (259)
T d2c12a2         160 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITT  239 (259)
T ss_dssp             EEEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTC
T ss_pred             hccceeeeeecCCcccccccceEEEEEEEecCCCccccccccCCCCceEEEEEeCCCCCcccCCCeeecCcccccccccC
Confidence            99999999999984     58899999998532            35899999987665      555567899999999


Q ss_pred             ceeeEEEeeeEeCCCCCcC
Q 022844          254 QNGDILLKKVFVPDEDRLP  272 (291)
Q Consensus       254 ~~~~v~f~~v~Vp~~~vlg  272 (291)
                      .+++|.|+||+||++++||
T Consensus       240 ~~~~v~f~dv~Vp~~~llG  258 (259)
T d2c12a2         240 SGPHTRFTEFHVPHENLLC  258 (259)
T ss_dssp             CCCEEEEEEEEEEGGGBCS
T ss_pred             ceEEEEEeeEEECHHHeeC
Confidence            9999999999999999997

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=100.00  E-value=8.5e-46  Score=312.21  Aligned_cols=205  Identities=23%  Similarity=0.319  Sum_probs=190.5

Q ss_pred             HHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHH
Q 022844           68 ECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLT  146 (291)
Q Consensus        68 ~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~  146 (291)
                      .++.+.+.|.+.++|+++.+|+++|+++++.||+++ +|++|||.|+++.+.+.++|+++++|++++..+..|. ++..+
T Consensus         4 a~~~~~i~~~Aae~d~~~~~p~~~~~~l~~~Gl~~~~iP~e~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~-~~~~~   82 (210)
T d1r2ja2           4 ALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG-MAAWT   82 (210)
T ss_dssp             HHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHH
T ss_pred             HHHHhhhhHhHHHHHHhCCCCHHHHHHHHHcCCCcccCChhHccccccHHHHhhhhcccccccccccccccccc-ccchh
Confidence            467788999999999999999999999999999999 9999999999999999999999999998887766664 66778


Q ss_pred             HHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeCCCCC
Q 022844          147 IALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ  226 (291)
Q Consensus       147 l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~~~~~  226 (291)
                      |..+|+++||++|||++++|+. .++++|||..|+|...++|++++++++|+|||+|+||||+..||+++|+|+.++ ++
T Consensus        83 l~~~gs~~qk~~~l~~~~~g~~-~~~~~te~~~gs~~~~~~t~a~~~~~g~~l~G~K~~vs~a~~Ad~~~v~a~~~~-~~  160 (210)
T d1r2ja2          83 VQRLGDAGQRATFLKELTSGKL-AAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQED-GS  160 (210)
T ss_dssp             HHHHSCHHHHHHHHHHTTCC-C-EEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCSS-SC
T ss_pred             hhhccccccccccccccccccc-ccccccccccccccccccceEEEeccceEEEEeecccccccccccccceeeecC-CC
Confidence            9999999999999999999975 679999999999999999999999999999999999999999999999999764 45


Q ss_pred             eEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCC
Q 022844          227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN  275 (291)
Q Consensus       227 ~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~  275 (291)
                      .++|+||++.|||++.+.+.++|+|++++++|+|+||+||++++||+.+
T Consensus       161 ~~~~lv~~~~~Gv~v~~~~~~~G~r~~~~~~v~f~~v~VP~~~~lG~~G  209 (210)
T d1r2ja2         161 GAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSG  209 (210)
T ss_dssp             CEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTT
T ss_pred             ceEEeecCCCCCeEeccCCCcccCCCCCeEEEEEeeEEECHHHCcCCCC
Confidence            6899999999999999999999999999999999999999999999754

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.5e-34  Score=247.65  Aligned_cols=211  Identities=18%  Similarity=0.226  Sum_probs=155.5

Q ss_pred             CHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchh
Q 022844           56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCST  134 (291)
Q Consensus        56 ~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~  134 (291)
                      ++++.++++.+++++.+.  |.....+.......+.++...+.++... .++++|+..  +.....+.+.. ..+.+.+ 
T Consensus        26 ~~e~~~~r~~v~~~i~~d--p~f~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~G~~~--~~~~~~~~~~~-~~~~~~~-   99 (267)
T d2ddha3          26 SPENTRRRREIENLILND--PDFQHEDYNFLTRSQRYEVAVKKSATMVKKMREYGISD--PEEIMWFKNSV-HRGHPEP-   99 (267)
T ss_dssp             SHHHHHHHHHHHHHHHTC--GGGCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCC--HHHHHHHHHHH-HTTCCCT-
T ss_pred             CHHHHHHHHHHHHHHhcC--cccCCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHhhh-ccCCCce-
Confidence            356777778888887663  2111101111111345554444444333 345555432  33333333333 3333333 


Q ss_pred             HHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeC--CEEEEEe-----eeeccc
Q 022844          135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILEG-----QKRWIG  207 (291)
Q Consensus       135 ~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~--~g~~LnG-----~K~~it  207 (291)
                       +.+|.++....|..+||++||++|||++++|+.++|+|+|||++|||+..++|+|++++  +.|+|||     +|+|||
T Consensus       100 -~~v~~~l~~~~i~~~Gt~eqk~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~T~A~~~~~~~~~vlnG~k~~~~K~wit  178 (267)
T d2ddha3         100 -LDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPG  178 (267)
T ss_dssp             -THHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTTSEECCT
T ss_pred             -ehhhhhhhhhHHHhhCCHHHHHHHHHHHhcCCeeeeehhcccCccccccccccceeecccCceeecCccccceeeecCC
Confidence             34566666778999999999999999999999999999999999999999999999877  5599999     799999


Q ss_pred             C-CCCCCEEEEEEEeCC---CCCeEEEEEeC-------CCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC
Q 022844          208 N-STFADVLVIFARNTT---TNQINGYLVKK-------DAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG  273 (291)
Q Consensus       208 ~-~~~a~~~lv~a~~~~---~~~~~~flV~~-------~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~  273 (291)
                      | +..|++++|+|++..   ..|+++|+||.       +.|||++.+.+.++|+|++.++.|.|+||+||.+++|++
T Consensus       179 ~~~~~a~~~iv~a~~~~~~~~~G~s~F~V~~~~~~~~~~~pGv~v~~~~~~~G~~~~~~~~i~fd~V~VP~~~lL~~  255 (267)
T d2ddha3         179 GLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMK  255 (267)
T ss_dssp             TTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEGGGBCCS
T ss_pred             CCcccCCEEEEeeeccCCCCCCccEEEEEEecCcCccCCCCCeEeccCCCccccCCCceEEEEEeeEEECHHHhCCC
Confidence            8 678999999999853   24699999994       568999999999999999999999999999999999975

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=4.2e-32  Score=235.50  Aligned_cols=208  Identities=23%  Similarity=0.349  Sum_probs=153.9

Q ss_pred             CHHHHHHHHHHHHHHHhhccchHHHHHHhCCCC-hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 022844           56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (291)
Q Consensus        56 ~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~  133 (291)
                      ++++.++++.+++|+.+.  |.... +...... .+.++...+.+.... ...++|.   +......+...+..   +  
T Consensus        27 ~ee~~~~r~~v~~~~~~d--p~f~~-~~~~~~sr~e~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~---~--   95 (271)
T d1w07a3          27 SRHAFEVSDRIARLVASD--PVFEK-SNRARLSRKELFKSTLRKCAHAFKRIIELRL---NEEEAGRLRHFIDQ---P--   95 (271)
T ss_dssp             SHHHHHHHHHHHHHHHTC--GGGCC-TTTTSSCHHHHHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHCC---C--
T ss_pred             CHHHHHHHHHHHHHHhcC--cccCC-CCcCCCCHHHHHHHHHHHHHHHHHHHHHcCC---ChhhhHHHHHHhcc---c--
Confidence            567888889999988764  32111 1111122 244443333222222 2233333   33333333333322   2  


Q ss_pred             hHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEEe-----eeecc
Q 022844          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEG-----QKRWI  206 (291)
Q Consensus       134 ~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~LnG-----~K~~i  206 (291)
                      ..+.+|..+....|..+||++||++|||++++|+.++|+|+|||++|||+..++|+|+++  ++.|+|||     +|+||
T Consensus        96 ~~~~vh~~~~~~~i~~~Gt~eQk~~~Lp~l~~G~~~~~~a~TEp~~GSd~~~l~T~A~~d~~gd~~vlng~k~~~~K~wi  175 (271)
T d1w07a3          96 AYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWP  175 (271)
T ss_dssp             CHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECC
T ss_pred             hHHHHHHHhhHHHHHhhCCHHHHHHhhHHHhCCCeEEEecccCCccccCcccccceeeecCCCceeeecccccceeeecc
Confidence            234567777778899999999999999999999999999999999999999999999987  56699999     89999


Q ss_pred             cC-CCCCCEEEEEEEeCC---CCCeEEEEEe-------CCCCCeEEeccCCccC---ccccceeeEEEeeeEeCCCCCcC
Q 022844          207 GN-STFADVLVIFARNTT---TNQINGYLVK-------KDAPGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLP  272 (291)
Q Consensus       207 t~-~~~a~~~lv~a~~~~---~~~~~~flV~-------~~~~Gv~~~~~~~~~G---~r~~~~~~v~f~~v~Vp~~~vlg  272 (291)
                      +| +..|++++|+|++..   +.++++|+||       .+.|||++.+...++|   ++++.++.|.|+||+||.+++||
T Consensus       176 ~~~g~~a~~~vv~a~~~~~~~~~g~~~flV~~~~~~~~~~~pGv~v~~~~~k~G~~~~~~~~~~~i~Fd~VrVP~~~lLg  255 (271)
T d1w07a3         176 GGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLM  255 (271)
T ss_dssp             TTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGBCC
T ss_pred             CCchhhhhhhheeeeecCCCCCCCEEEEEEeccccCCCCCCCceEEcccccccCccccCCCceEEEEEeeEEECHHHcCC
Confidence            98 678999999999842   3468999999       4568999999999998   68889999999999999999998


Q ss_pred             CC
Q 022844          273 GV  274 (291)
Q Consensus       273 ~~  274 (291)
                      +.
T Consensus       256 ~~  257 (271)
T d1w07a3         256 RL  257 (271)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

Probab=99.89  E-value=4.7e-23  Score=178.50  Aligned_cols=128  Identities=17%  Similarity=0.231  Sum_probs=111.4

Q ss_pred             HHHHHhcCCH--HHHHHHHHHHhcCCceeEEEecCCCCCCCCCC--------CceEEEEeCCEEEEEeeeecccCCCCCC
Q 022844          144 MLTIALCGSE--EQKQKYLPSLAQLNTIACWALTEPAYGSDASA--------LNTTATKVEGGWILEGQKRWIGNSTFAD  213 (291)
Q Consensus       144 ~~~l~~~Gt~--~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~--------~~t~a~~~~~g~~LnG~K~~it~~~~a~  213 (291)
                      ...+..+|++  +|+++|++.+.++++..|.|+|||+.|++...        ..+.++++++||+|||.|.|+|++..||
T Consensus       117 ~~~~~~~g~~~~e~~~~yl~~~~~~dl~~t~altePq~dr~~~~~~q~~~~~~~~v~~~~~~g~vvnG~K~~~T~a~~ad  196 (275)
T d1u8va2         117 YEIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSH  196 (275)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCEEEEECSSEEEEEEEECSCTTCTTCS
T ss_pred             HHHhhhhCcHHHHHHHHHHHHHHhCCeEEEEeeecCCCCCccChhhccCccceEEEEEecCCEEEEeeEEEEecCCCccc
Confidence            3466788987  78899999999999999999999999998753        3466778899999999999999999999


Q ss_pred             EEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccce---------------eeEEEeeeEeCCCCCc
Q 022844          214 VLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQN---------------GDILLKKVFVPDEDRL  271 (291)
Q Consensus       214 ~~lv~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~---------------~~v~f~~v~Vp~~~vl  271 (291)
                      +++|+++++.    .++.++|+||.++|||++...++++|+|++.+               +.|.||||+||.|+|+
T Consensus       197 ~~~v~~~~~~~~~~~~~~~~f~Vp~~tpGv~~~~~~~~~~~r~~~~~~~~~~~s~~f~e~da~vvFddV~VP~e~Vf  273 (275)
T d1u8va2         197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIF  273 (275)
T ss_dssp             EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEE
T ss_pred             eEEEEeccCCCCCCCCcEEEEEEeCCCCCeEEecccCCcCCcccCCCCCccccccccCCceeEEEeceEECcHHHee
Confidence            9999998742    24688999999999999998889999887654               4599999999999875