Citrus Sinensis ID: 022859

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MEKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVDA
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHcccccccccEEEEccccccccHHHHHHHHHHccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHccccEEcccccccccccccccHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccEEcccHHHHHHHHHHHcccccEEEEEEccccccccccccccEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEccccccccHHHHHHHHHHcccccccEEEEEcccccEccccEEEEccccEccccccccccHHHHHHHHHccccccccHHccHHcccHHEHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHHHHccccEEEEEcccccccccccEEccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHHccccEEEEEEEEEccccccccccEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
mekirrashagswytdNSKRLAEELDGWLreaglpkspevrgviaphagysysgraaayafgnidptsISRVfllgpshhyytpkcalstatvyktpigdlplDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILvgavnaeneAMYGRLFAkyvddpsnffsvssdfchwgsrfnymhydkkhGVIHKSIEALDKMGMdiietgdpdAFKKYLLEYDNTICGRHPISVFLHMLGNCSTKIKIKFLRYEqssqcktkrdssvSYASAAAKVDA
Flexible Loop (DISEMBL)
mekirrashagswytdnskRLAEELDGWLREAglpkspevrgVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQssqcktkrdssvsyasaaakvda
Low Complexity Region (SEG)
MEKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHagysysgraaayaFGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDssvsyasaaaKVDA
Disordered region (IsUnstruct)
***********************ELDGWLREAGL***PEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTKIKIKFLRYE************************
Disordered Region (DISOPRED)
**KIRRASHAGSWYTDNSKRLAEELDGWLREAG****PEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVDA
Disordered Region (DISEMBL)
************WYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTKIKIKFLRYE************************
Disordered Region (DISPRO)
************WYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVDA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q6DJ03	297	Protein MEMO1 OS=Xenopus	yes	no	0.975	0.956	0.534	3e-87
Q6GNT9	297	Protein MEMO1 OS=Xenopus	N/A	no	0.975	0.956	0.531	5e-87
Q4QQR9	297	Protein MEMO1 OS=Rattus n	yes	no	0.975	0.956	0.524	1e-85
Q91VH6	297	Protein MEMO1 OS=Mus musc	yes	no	0.975	0.956	0.524	2e-85
Q4R6D9	297	Protein MEMO1 OS=Macaca f	N/A	no	0.975	0.956	0.524	4e-85
Q9Y316	297	Protein MEMO1 OS=Homo sap	yes	no	0.975	0.956	0.524	4e-85
Q803S3	297	Protein MEMO1 OS=Danio re	yes	no	0.975	0.956	0.527	9e-84
Q54NZ1	290	Protein MEMO1 homolog OS=	yes	no	0.958	0.962	0.521	6e-81
Q2HJH7	285	Protein MEMO1 OS=Bos taur	yes	no	0.910	0.929	0.505	4e-77
Q22915	350	MEMO1 family protein tag-	no	no	0.924	0.768	0.461	2e-68

>sp|Q6DJ03|MEMO1_XENTR Protein MEMO1 OS=Xenopus tropicalis GN=memo1 PE=2 SV=1

 Score =  322 bits (824), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/290 (53%), Positives = 197/290 (67%), Gaps = 6/290 (2%)

Query: 5   RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNI 64
           R ASHAGSWYT +  +L+ +LDGWL +A   K P  R +IAPHAGY+Y G  AA+A+  +
Sbjct: 8   REASHAGSWYTASGSQLSAQLDGWLSQAQTSKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 66

Query: 65  DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
           DP+   RVF+LGPSHH    +CALST  +Y+TP+ DL +D +V  +L  TG FE M +  
Sbjct: 67  DPSVTRRVFILGPSHHVALSRCALSTVDIYRTPLYDLHIDQKVYGDLWKTGMFERMSLQT 126

Query: 125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
           DE EHS+EMHLPY AK  E H   + IVP+LVGA++   E  +G+LF+KY+ DP+N F +
Sbjct: 127 DEDEHSIEMHLPYTAKTMESHKDDLTIVPVLVGALSESKEQEFGKLFSKYLADPTNLFVI 186

Query: 183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
           SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP  F  YL +Y NTICGR
Sbjct: 187 SSDFCHWGQRFRYTYYDESQGEIYRSIENLDKMGMGIIEQLDPVQFSNYLKKYHNTICGR 246

Query: 243 HPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKV 289
           HPI V L+    L      +   FL Y QSSQC++ +DSSVSYA+ A  V
Sbjct: 247 HPIGVLLNAATELQKNGVNMSFSFLNYAQSSQCRSWQDSSVSYAAGALVV 296

May control cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton. Mediator of ERBB2 signaling.
Xenopus tropicalis (taxid: 8364)

>sp|Q6GNT9|MEMO1_XENLA Protein MEMO1 OS=Xenopus laevis GN=memo1 PE=2 SV=1

 Score =  321 bits (822), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 154/290 (53%), Positives = 197/290 (67%), Gaps = 6/290 (2%)

Query: 5   RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNI 64
           R ASHAGSWY+ +  +L+ +LDGWL +A   K P  R +IAPHAGY+Y G  AA+A+  +
Sbjct: 8   REASHAGSWYSASGSQLSAQLDGWLSQAQTSKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 66

Query: 65  DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
           DP+   RVF+LGPSHH    +CALST  +Y+TP+ DL +D +V  EL  TG FE M +  
Sbjct: 67  DPSVTRRVFILGPSHHVALSRCALSTVDIYRTPLYDLHVDQKVYGELWKTGMFERMSLQT 126

Query: 125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
           DE EHS+EMHLPY AK  E H   + IVP+LVGA++   E  +G++F+KY+ DP+N F +
Sbjct: 127 DEDEHSIEMHLPYTAKAMESHKDDLTIVPVLVGALSESKEQEFGKVFSKYLADPTNLFVI 186

Query: 183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
           SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP  F  YL +Y NTICGR
Sbjct: 187 SSDFCHWGQRFRYTYYDESQGEIYRSIENLDKMGMSIIEQLDPVQFSNYLKKYHNTICGR 246

Query: 243 HPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKV 289
           HPI V L+    L      +   FL Y QSSQC++ +DSSVSYA+ A  V
Sbjct: 247 HPIGVLLNAATELQKNGVNMSFSFLNYAQSSQCRSWQDSSVSYAAGALVV 296

May control cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton. Mediator of ERBB2 signaling.

Xenopus laevis (taxid: 8355)

>sp|Q4QQR9|MEMO1_RAT Protein MEMO1 OS=Rattus norvegicus GN=Memo1 PE=2 SV=1

 Score =  316 bits (809), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 152/290 (52%), Positives = 195/290 (67%), Gaps = 6/290 (2%)

Query: 5   RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNI 64
           R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPHAGY+Y G  AA+A+  +
Sbjct: 8   REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 66

Query: 65  DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
           DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  
Sbjct: 67  DPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQT 126

Query: 125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
           DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F V
Sbjct: 127 DEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVV 186

Query: 183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
           SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGR
Sbjct: 187 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGR 246

Query: 243 HPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKV 289
           HPI V L+    L      +   FL Y QSSQC++ +DSSVSYA+ A  V
Sbjct: 247 HPIGVLLNAITELQKSGMNMSFSFLNYAQSSQCRSWQDSSVSYAAGALTV 296

May control cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton. Mediator of ERBB2 signaling. The MEMO1-RHOA-DIAPH1 signaling pathway plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. It controls the localization of APC and CLASP2 to the cell membrane, via the regulation of GSK3B activity. In turn, membrane-bound APC allows the localization of the MACF1 to the cell membrane, which is required for microtubule capture and stabilization.

Rattus norvegicus (taxid: 10116)

>sp|Q91VH6|MEMO1_MOUSE Protein MEMO1 OS=Mus musculus GN=Memo1 PE=1 SV=1

 Score =  315 bits (808), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 152/290 (52%), Positives = 195/290 (67%), Gaps = 6/290 (2%)

Query: 5   RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNI 64
           R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPHAGY+Y G  AA+A+  +
Sbjct: 8   REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 66

Query: 65  DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
           DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  
Sbjct: 67  DPSVTRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQT 126

Query: 125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
           DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F V
Sbjct: 127 DEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVV 186

Query: 183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
           SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGR
Sbjct: 187 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGR 246

Query: 243 HPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKV 289
           HPI V L+    L      +   FL Y QSSQC++ +DSSVSYA+ A  V
Sbjct: 247 HPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRSWQDSSVSYAAGALTV 296

May control cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton. Mediator of ERBB2 signaling. The MEMO1-RHOA-DIAPH1 signaling pathway plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. It controls the localization of APC and CLASP2 to the cell membrane, via the regulation of GSK3B activity. In turn, membrane-bound APC allows the localization of the MACF1 to the cell membrane, which is required for microtubule capture and stabilization.

Mus musculus (taxid: 10090)

>sp|Q4R6D9|MEMO1_MACFA Protein MEMO1 OS=Macaca fascicularis GN=MEMO1 PE=2 SV=1

 Score =  314 bits (805), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 152/290 (52%), Positives = 194/290 (66%), Gaps = 6/290 (2%)

Query: 5   RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNI 64
           R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPHAGY+Y G  AA+A+  +
Sbjct: 8   REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 66

Query: 65  DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
           DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  
Sbjct: 67  DPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQT 126

Query: 125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
           DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F V
Sbjct: 127 DEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVV 186

Query: 183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
           SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGR
Sbjct: 187 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGR 246

Query: 243 HPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKV 289
           HPI V L+    L      +   FL Y QSSQC+  +DSSVSYA+ A  V
Sbjct: 247 HPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQDSSVSYAAGALTV 296

May control cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton. Mediator of ERBB2 signaling. The MEMO1-RHOA-DIAPH1 signaling pathway plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. It controls the localization of APC and CLASP2 to the cell membrane, via the regulation of GSK3B activity. In turn, membrane-bound APC allows the localization of the MACF1 to the cell membrane, which is required for microtubule capture and stabilization.

Macaca fascicularis (taxid: 9541)

>sp|Q9Y316|MEMO1_HUMAN Protein MEMO1 OS=Homo sapiens GN=MEMO1 PE=1 SV=1

 Score =  314 bits (805), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 152/290 (52%), Positives = 194/290 (66%), Gaps = 6/290 (2%)

Query: 5   RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNI 64
           R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPHAGY+Y G  AA+A+  +
Sbjct: 8   REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 66

Query: 65  DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
           DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  
Sbjct: 67  DPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQT 126

Query: 125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
           DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F V
Sbjct: 127 DEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVV 186

Query: 183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
           SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGR
Sbjct: 187 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGR 246

Query: 243 HPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKV 289
           HPI V L+    L      +   FL Y QSSQC+  +DSSVSYA+ A  V
Sbjct: 247 HPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQDSSVSYAAGALTV 296

May control cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton. Mediator of ERBB2 signaling. The MEMO1-RHOA-DIAPH1 signaling pathway plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. It controls the localization of APC and CLASP2 to the cell membrane, via the regulation of GSK3B activity. In turn, membrane-bound APC allows the localization of the MACF1 to the cell membrane, which is required for microtubule capture and stabilization. Is required for breast carcinoma cell migration.

Homo sapiens (taxid: 9606)

>sp|Q803S3|MEMO1_DANRE Protein MEMO1 OS=Danio rerio GN=memo1 PE=2 SV=1

 Score =  310 bits (793), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 153/290 (52%), Positives = 191/290 (65%), Gaps = 6/290 (2%)

Query: 5   RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNI 64
           R ASHAGSWYT +  +L  +L+GWL +A     P  R +IAPHAGY+Y G  AA+A+  +
Sbjct: 8   REASHAGSWYTASGSQLNAQLEGWLSQAQSIAGP-ARAIIAPHAGYTYCGACAAHAYKQV 66

Query: 65  DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
           DP+   RVF+LGPSHH    +CALS A VY+TP+ DL +D +V  +L  TG FE M +  
Sbjct: 67  DPSITRRVFILGPSHHVPLSRCALSPAEVYRTPLYDLRIDQKVYADLWKTGMFERMSLQT 126

Query: 125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
           DE EHS+EMHLPY AK  E H     IVP+LVGA++   E  YG+L +KY+ DPSN F +
Sbjct: 127 DEDEHSIEMHLPYTAKAMENHKDEFSIVPVLVGALSGSKEQEYGKLLSKYLADPSNLFII 186

Query: 183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
           S DFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGR
Sbjct: 187 SPDFCHWGQRFRYTYYDESQGEIYRSIEHLDKMGMGIIEQLDPISFSNYLKKYHNTICGR 246

Query: 243 HPISVFLHMLGNCSTK---IKIKFLRYEQSSQCKTKRDSSVSYASAAAKV 289
           HPI V L+ +         +   FL Y QSSQC+   DSSVSYA+ A  V
Sbjct: 247 HPIGVLLNAVAELKKNGIDMNFSFLNYAQSSQCRNWSDSSVSYAAGALIV 296

May control cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton. Mediator of ERBB2 signaling.

Danio rerio (taxid: 7955)

>sp|Q54NZ1|MEMO1_DICDI Protein MEMO1 homolog OS=Dictyostelium discoideum GN=memo1 PE=3 SV=1

 Score =  300 bits (769), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 147/282 (52%), Positives = 190/282 (67%), Gaps = 3/282 (1%)

Query: 4   IRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGN 63
           IR  +HAGSWY DN+++L ++L  WL EA   ++  V+ +IAPHAGYSYSGRAAAYA+ N
Sbjct: 2   IRNCTHAGSWYLDNARKLEKQLSDWLSEAS-RQNQNVKSIIAPHAGYSYSGRAAAYAYIN 60

Query: 64  IDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDIC 123
           + P +  RVF+LGPSHH Y   C L+    ++TPIG+L +D +   +L  TG F      
Sbjct: 61  LIPENYKRVFILGPSHHVYMKTCGLTKLDTWETPIGNLKVDKDTTNKLFDTGSFIWNTKS 120

Query: 124 VDEAEHSMEMHLPYLAKVFEGHLIK--IVPILVGAVNAENEAMYGRLFAKYVDDPSNFFS 181
           VDE EHS+E+ LPY+AKV E  L++  IVPI+VG+++ + E +YG++ A Y DDP NFF 
Sbjct: 121 VDEDEHSLELQLPYIAKVAEKRLLELSIVPIMVGSLSIDLEELYGKILAPYFDDPENFFV 180

Query: 182 VSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICG 241
           +SSDFCHWG RF Y  Y+ K   I+K IE LD+ GM+IIE+GDP  F KYL E  NTICG
Sbjct: 181 ISSDFCHWGERFGYTRYENKEVPIYKYIEELDRKGMEIIESGDPVQFSKYLKETKNTICG 240

Query: 242 RHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYA 283
           R PI+V L +  N   K  I  L YEQSS+     DSSVSY 
Sbjct: 241 RCPIAVMLWITKNSQFKYNISSLYYEQSSKVIKSSDSSVSYG 282

Dictyostelium discoideum (taxid: 44689)

>sp|Q2HJH7|MEMO1_BOVIN Protein MEMO1 OS=Bos taurus GN=MEMO1 PE=2 SV=1

 Score =  288 bits (736), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 136/269 (50%), Positives = 181/269 (67%), Gaps = 4/269 (1%)

Query: 5   RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNI 64
           R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPHAGY+Y G  AA+A+  +
Sbjct: 8   REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 66

Query: 65  DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
           DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  
Sbjct: 67  DPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQT 126

Query: 125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
           DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ +PSN F V
Sbjct: 127 DEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLAEPSNLFVV 186

Query: 183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
           SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGR
Sbjct: 187 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGR 246

Query: 243 HPISVFLHMLGNCSTK-IKIKFLRYEQSS 270
           HPI V L+ +       + + F  ++Q+S
Sbjct: 247 HPIGVLLNAITELQKNGMNMSFSFFQQAS 275

May control cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton. Mediator of ERBB2 signaling. The MEMO1-RHOA-DIAPH1 signaling pathway plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. It controls the localization of APC and CLASP2 to the cell membrane, via the regulation of GSK3B activity. In turn, membrane-bound APC allows the localization of the MACF1 to the cell membrane, which is required for microtubule capture and stabilization.

Bos taurus (taxid: 9913)

>sp|Q22915|TG253_CAEEL MEMO1 family protein tag-253 OS=Caenorhabditis elegans GN=tag-253 PE=3 SV=3

 Score =  259 bits (661), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 127/275 (46%), Positives = 177/275 (64%), Gaps = 6/275 (2%)

Query: 2   EKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAF 61
           E  R ASHAGSWY  N + L  +L  WL  AG P+    R +I+PHAGYSY G  AAYAF
Sbjct: 56  EHTRSASHAGSWYNANQRDLDRQLTKWLDNAG-PRIGTARALISPHAGYSYCGETAAYAF 114

Query: 62  GNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMD 121
             +  +++ RVF+LGPSH      CA++T + Y+TP+GDL +D ++ EEL+AT  F+LMD
Sbjct: 115 KQVVSSAVERVFILGPSHVVALNGCAITTCSKYRTPLGDLIVDHKINEELRATRHFDLMD 174

Query: 122 ICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFS 181
              +E+EHS+EM LP++AKV       IVP+LVG++    +  YG +FA Y++DP N F 
Sbjct: 175 RRDEESEHSIEMQLPFIAKVMGSKRYTIVPVLVGSLPGSRQQTYGNIFAHYMEDPRNLFV 234

Query: 182 VSSDFCHWGSRFNYMHYDKKHGV-IHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTIC 240
           +SSDFCHWG RF++  YD+   + I++ I  +DK GM  IET +P AF  YL +  NTIC
Sbjct: 235 ISSDFCHWGERFSFSPYDRHSSIPIYEQITNMDKQGMSAIETLNPAAFNDYLKKTQNTIC 294

Query: 241 GRHPISVFL----HMLGNCSTKIKIKFLRYEQSSQ 271
           GR+PI + L    H   + +   + +FL Y QS++
Sbjct: 295 GRNPILIMLQAAEHFRISNNHTHEFRFLHYTQSNK 329

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
255548834	291	Protein C2orf4, putative [Ricinus commun	1.0	1.0	0.890	1e-149
359475871	291	PREDICTED: protein MEMO1-like [Vitis vin	1.0	1.0	0.879	1e-147
449441896	291	PREDICTED: protein MEMO1-like [Cucumis s	1.0	1.0	0.879	1e-146
356552504	296	PREDICTED: protein MEMO1-like [Glycine m	0.989	0.972	0.875	1e-145
224143207	291	predicted protein [Populus trichocarpa]	1.0	1.0	0.872	1e-144
255647372	296	unknown [Glycine max]	0.989	0.972	0.868	1e-144
224092526	291	predicted protein [Populus trichocarpa]	1.0	1.0	0.865	1e-141
326489895	298	predicted protein [Hordeum vulgare subsp	1.0	0.976	0.817	1e-138
258644468	298	unknown protein [Oryza sativa Indica Gro	1.0	0.976	0.800	1e-137
115475776	298	Os08g0299000 [Oryza sativa Japonica Grou	1.0	0.976	0.797	1e-136

>gi|255548834|ref|XP_002515473.1| Protein C2orf4, putative [Ricinus communis] gi|223545417|gb|EEF46922.1| Protein C2orf4, putative [Ricinus communis]

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/291 (89%), Positives = 276/291 (94%)

Query: 1   MEKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYA 60
           MEKIRRASHAGSWYTDN K+L EELDGWL+ A L KSP+VRGVIAPHAGYSYSGRAAAYA
Sbjct: 1   MEKIRRASHAGSWYTDNPKKLDEELDGWLKAAALEKSPDVRGVIAPHAGYSYSGRAAAYA 60

Query: 61  FGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELM 120
           FGNIDP +ISR+FLLGPSHHYYTPKCALSTATVYKTPIGDLP+DLEVIEELKATGKFELM
Sbjct: 61  FGNIDPANISRIFLLGPSHHYYTPKCALSTATVYKTPIGDLPIDLEVIEELKATGKFELM 120

Query: 121 DICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFF 180
           D+ VDEAEHSMEMHLPYLAKVFEGH +K+VPILVGA+NA+NEAMYG+L  KYVDDP+NFF
Sbjct: 121 DLRVDEAEHSMEMHLPYLAKVFEGHQVKVVPILVGALNADNEAMYGKLLGKYVDDPTNFF 180

Query: 181 SVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTIC 240
           SVSSDFCHWGSRFNYMHYDKK+G IHKSIEALDKMGMDIIETGDPDAFK+YL EYDNTIC
Sbjct: 181 SVSSDFCHWGSRFNYMHYDKKYGAIHKSIEALDKMGMDIIETGDPDAFKQYLQEYDNTIC 240

Query: 241 GRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVDA 291
           GRHPISVF+HML NC+T IKIKFLRYEQSSQCKT RDSSVSYASAAAKVDA
Sbjct: 241 GRHPISVFVHMLRNCATVIKIKFLRYEQSSQCKTTRDSSVSYASAAAKVDA 291

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475871|ref|XP_002285449.2| PREDICTED: protein MEMO1-like [Vitis vinifera] gi|296082111|emb|CBI21116.3| unnamed protein product [Vitis vinifera]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/291 (87%), Positives = 277/291 (95%)

Query: 1   MEKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYA 60
           ME IRRASHAGSWYTDN ++LAEELDGWLR +GL KSP+VRGVIAPHAGYSYSGRAAAYA
Sbjct: 1   MEMIRRASHAGSWYTDNPRKLAEELDGWLRASGLAKSPDVRGVIAPHAGYSYSGRAAAYA 60

Query: 61  FGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELM 120
           FGNIDP+SISRVFLLGPSHHYYTPKCALS ATVYKTP+GDL +DLEV+EELKATGKFELM
Sbjct: 61  FGNIDPSSISRVFLLGPSHHYYTPKCALSRATVYKTPVGDLQIDLEVVEELKATGKFELM 120

Query: 121 DICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFF 180
           D+ VDEAEHSMEMHLPYLAKVF+G+ +KI+PILVGA+NAENEAMYGR+ AKYVDDP+NFF
Sbjct: 121 DLDVDEAEHSMEMHLPYLAKVFDGYPVKIIPILVGALNAENEAMYGRMLAKYVDDPNNFF 180

Query: 181 SVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTIC 240
           SVSSDFCHWGSRFNY+HYDKK G IHKSIEALD+MGMDIIETGDPDAFK+YLLE+DNTIC
Sbjct: 181 SVSSDFCHWGSRFNYVHYDKKFGAIHKSIEALDRMGMDIIETGDPDAFKRYLLEFDNTIC 240

Query: 241 GRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVDA 291
           GRHPISVFLHML NCSTKIKI FLRYEQSSQCKT RDSSVSYASAAA+VDA
Sbjct: 241 GRHPISVFLHMLRNCSTKIKINFLRYEQSSQCKTMRDSSVSYASAAAQVDA 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441896|ref|XP_004138718.1| PREDICTED: protein MEMO1-like [Cucumis sativus] gi|449493342|ref|XP_004159261.1| PREDICTED: protein MEMO1-like [Cucumis sativus]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/291 (87%), Positives = 277/291 (95%)

Query: 1   MEKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYA 60
           M+KIRRASHAGSWYTDNSK+LAEELDGWL  +GL KSP+VRGVIAPHAGYSYSGRAAAYA
Sbjct: 1   MDKIRRASHAGSWYTDNSKKLAEELDGWLSASGLSKSPDVRGVIAPHAGYSYSGRAAAYA 60

Query: 61  FGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELM 120
           FGNIDPT+ISR+FLLGPSHHYYTPKCALSTAT+Y+TP+GDLP+DLEVIEELKATGKFELM
Sbjct: 61  FGNIDPTNISRIFLLGPSHHYYTPKCALSTATIYQTPVGDLPIDLEVIEELKATGKFELM 120

Query: 121 DICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFF 180
           D+ VDEAEHSMEMHLPYLAKVFEGH +K+VPILVGAV+AE+EA YGRL AKYVDDP NFF
Sbjct: 121 DMHVDEAEHSMEMHLPYLAKVFEGHPVKVVPILVGAVSAESEATYGRLLAKYVDDPKNFF 180

Query: 181 SVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTIC 240
           S+SSDFCHWGSRF+YMHYDKKHG I+KSIEALD+MGMDIIETGD +AFKKYL EYDNTIC
Sbjct: 181 SISSDFCHWGSRFSYMHYDKKHGPIYKSIEALDRMGMDIIETGDAEAFKKYLQEYDNTIC 240

Query: 241 GRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVDA 291
           GRHPISVFLHML + STKIKIKFLRYEQSSQCKT RDSSVSYASAAAKVDA
Sbjct: 241 GRHPISVFLHMLKHSSTKIKIKFLRYEQSSQCKTTRDSSVSYASAAAKVDA 291

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552504|ref|XP_003544607.1| PREDICTED: protein MEMO1-like [Glycine max]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 252/288 (87%), Positives = 273/288 (94%)

Query: 3   KIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFG 62
           K+RR SHAGSWYTDN K+L+EEL+GWL+  GL KS +VRGVIAPHAGYSYSGRAAAYAFG
Sbjct: 4   KVRRPSHAGSWYTDNPKQLSEELEGWLQSCGLTKSSDVRGVIAPHAGYSYSGRAAAYAFG 63

Query: 63  NIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDI 122
           NIDP++I+RVFLLGPSHHYYTPKCAL+TATVYKTPIGDLP+DLEV EELKATGKFELMDI
Sbjct: 64  NIDPSNITRVFLLGPSHHYYTPKCALTTATVYKTPIGDLPIDLEVTEELKATGKFELMDI 123

Query: 123 CVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
            VDEAEHSMEMHLPYLAKVFEGH +KIVPILVGAV+AENEAMYG++ AKYVDD +NFFS+
Sbjct: 124 RVDEAEHSMEMHLPYLAKVFEGHQVKIVPILVGAVSAENEAMYGQILAKYVDDSNNFFSI 183

Query: 183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
           SSDFCHWGSRFNYMHYDKKHG I+KSIEALDKMGMDIIETGDPD+FK+YLLEYDNTICGR
Sbjct: 184 SSDFCHWGSRFNYMHYDKKHGPIYKSIEALDKMGMDIIETGDPDSFKQYLLEYDNTICGR 243

Query: 243 HPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVD 290
           HPISVFLHML NCSTKIKIKFLRYEQSSQCK+ RDSSVSYASAAAK D
Sbjct: 244 HPISVFLHMLRNCSTKIKIKFLRYEQSSQCKSNRDSSVSYASAAAKTD 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143207|ref|XP_002324881.1| predicted protein [Populus trichocarpa] gi|118483368|gb|ABK93585.1| unknown [Populus trichocarpa] gi|222866315|gb|EEF03446.1| predicted protein [Populus trichocarpa]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 254/291 (87%), Positives = 271/291 (93%)

Query: 1   MEKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYA 60
           M+KIRR SHAGSWYTDN K+L EEL+GWL   GL KSP+VRGVIAPHAGYSYSGRAAAYA
Sbjct: 1   MDKIRRPSHAGSWYTDNPKKLEEELEGWLGATGLTKSPDVRGVIAPHAGYSYSGRAAAYA 60

Query: 61  FGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELM 120
           FGNIDPT+I+RVFLLGPSHHYYTPKCALSTATVYKTPIGDLP+DLEVIEELKATGKFELM
Sbjct: 61  FGNIDPTNITRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPIDLEVIEELKATGKFELM 120

Query: 121 DICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFF 180
           D+ VDEAEHSMEMHLPYL K+FEGH +K+VPILVGA+N +NEAMYGRL AKYVDDP+NFF
Sbjct: 121 DLQVDEAEHSMEMHLPYLVKIFEGHPVKVVPILVGALNTDNEAMYGRLLAKYVDDPTNFF 180

Query: 181 SVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTIC 240
           SVSSDFCHWGSRF+Y HYDKK G IHKSIEALDKMGMDIIETG+ DAFK+YL EYDNTIC
Sbjct: 181 SVSSDFCHWGSRFHYTHYDKKCGPIHKSIEALDKMGMDIIETGNADAFKQYLSEYDNTIC 240

Query: 241 GRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVDA 291
           GRHPISVFLHM  NCSTKIKIKFLRYEQSSQCKT RDSSVSYASAAAKVDA
Sbjct: 241 GRHPISVFLHMSSNCSTKIKIKFLRYEQSSQCKTMRDSSVSYASAAAKVDA 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647372|gb|ACU24152.1| unknown [Glycine max]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/288 (86%), Positives = 272/288 (94%)

Query: 3   KIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFG 62
           K+RR SHAGSWYTDN K+L+EEL+GWL+  GL KS +VRGVIAPHAGYSYSGRAAAYAFG
Sbjct: 4   KVRRPSHAGSWYTDNPKQLSEELEGWLQSCGLTKSSDVRGVIAPHAGYSYSGRAAAYAFG 63

Query: 63  NIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDI 122
           NIDP++I+RVFLLGPSHHYYTPKCAL+TATVYKTPIGDLP+DLEV EELKATGKFELMDI
Sbjct: 64  NIDPSNITRVFLLGPSHHYYTPKCALTTATVYKTPIGDLPIDLEVTEELKATGKFELMDI 123

Query: 123 CVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
            VDEAEHSME+HLPYLAKVFEGH +KIVPILVGAV+AENEAMYG++ AKYVDD +NFFS+
Sbjct: 124 RVDEAEHSMEVHLPYLAKVFEGHQVKIVPILVGAVSAENEAMYGQILAKYVDDSNNFFSI 183

Query: 183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
           SSDFCHWGSRFNYMHYDKKHG I+KSIEALDKMGMDIIETGDPD+FK+YLLEYDNTICGR
Sbjct: 184 SSDFCHWGSRFNYMHYDKKHGPIYKSIEALDKMGMDIIETGDPDSFKQYLLEYDNTICGR 243

Query: 243 HPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVD 290
           HPISVFLHML NCSTKIKIKF RYEQSSQCK+ RDSSVSYASAAAK D
Sbjct: 244 HPISVFLHMLRNCSTKIKIKFFRYEQSSQCKSNRDSSVSYASAAAKTD 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092526|ref|XP_002309646.1| predicted protein [Populus trichocarpa] gi|222855622|gb|EEE93169.1| predicted protein [Populus trichocarpa]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/291 (86%), Positives = 270/291 (92%)

Query: 1   MEKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYA 60
           MEKIRRASHAGSWYTD+ K+L EEL+GWL + GL KSP+VRGVIAPHAGYSYSGRAAAYA
Sbjct: 1   MEKIRRASHAGSWYTDDPKKLEEELEGWLSDTGLTKSPDVRGVIAPHAGYSYSGRAAAYA 60

Query: 61  FGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELM 120
           FGNIDPT+I+RVFLLGPSHHYYTPKCALSTA VYKTPIGDLP+DLEVIEELKATGKFELM
Sbjct: 61  FGNIDPTNITRVFLLGPSHHYYTPKCALSTAAVYKTPIGDLPIDLEVIEELKATGKFELM 120

Query: 121 DICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFF 180
           D+ VDE EHSMEMHLPYLAK+FEGH +K+VPILVGAV+A+NEAMYG L AKYVDDP+NFF
Sbjct: 121 DLQVDEHEHSMEMHLPYLAKIFEGHPVKVVPILVGAVSADNEAMYGCLLAKYVDDPTNFF 180

Query: 181 SVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTIC 240
           SVSSDFCHWGSRF+Y  YDKK G IHKSIEALDKMGMDIIETG+ DA K+YL EY NTIC
Sbjct: 181 SVSSDFCHWGSRFHYTRYDKKCGPIHKSIEALDKMGMDIIETGNADALKQYLSEYGNTIC 240

Query: 241 GRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVDA 291
           GRHPISVFLHML NCSTKIKIKFLRYEQSSQCKT RDSSVSYASAAAKVDA
Sbjct: 241 GRHPISVFLHMLRNCSTKIKIKFLRYEQSSQCKTMRDSSVSYASAAAKVDA 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326489895|dbj|BAJ94021.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326513924|dbj|BAJ92112.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/291 (81%), Positives = 267/291 (91%)

Query: 1   MEKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYA 60
           ME++RRASHAGSWYT+N+ +L EELDGWL  A L KSP+VR VIAPHAGYSYSGR AAYA
Sbjct: 1   MERVRRASHAGSWYTNNASKLEEELDGWLSAAALTKSPDVRAVIAPHAGYSYSGRCAAYA 60

Query: 61  FGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELM 120
           FGNIDPT+ISRVFLLGPSHHYYTPKCAL+ ATVY TPIGDLP+DLEVIEELKATGKFE M
Sbjct: 61  FGNIDPTNISRVFLLGPSHHYYTPKCALTRATVYSTPIGDLPVDLEVIEELKATGKFEFM 120

Query: 121 DICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFF 180
           D+ VDEAEHSMEMHLPYL+KVF+GH +K+VPILVGAVN+++EAMYG+L AKYVDDP NFF
Sbjct: 121 DLNVDEAEHSMEMHLPYLSKVFQGHNVKVVPILVGAVNSQSEAMYGQLLAKYVDDPKNFF 180

Query: 181 SVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTIC 240
           SVSSDFCHWGSRF+Y +YDK HG IHKSIEALD+MGM+IIETGDPDAFK+YL EY+NTIC
Sbjct: 181 SVSSDFCHWGSRFSYTYYDKNHGAIHKSIEALDRMGMEIIETGDPDAFKQYLQEYENTIC 240

Query: 241 GRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVDA 291
           GRHPISV LHML +C TKIK+ F+RYEQSSQCK+ RDSSVSYASAAAKVD+
Sbjct: 241 GRHPISVLLHMLKHCLTKIKVGFVRYEQSSQCKSMRDSSVSYASAAAKVDS 291

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|258644468|dbj|BAI39726.1| unknown protein [Oryza sativa Indica Group]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/291 (80%), Positives = 268/291 (92%)

Query: 1   MEKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYA 60
           ME++RRASHAGSWYT+N+++L EELDGWLR AGL KSP+VR VIAPHAGYSYSGR AAYA
Sbjct: 1   MERVRRASHAGSWYTNNARKLDEELDGWLRAAGLTKSPDVRAVIAPHAGYSYSGRCAAYA 60

Query: 61  FGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELM 120
           FGNIDPT+ISRVFLLGPSHHYYTPKCAL+ AT+Y TPIGDLP+D EVIEEL ATGKF+ M
Sbjct: 61  FGNIDPTNISRVFLLGPSHHYYTPKCALTRATIYSTPIGDLPVDHEVIEELNATGKFDFM 120

Query: 121 DICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFF 180
           D+ VDEAEHSMEMHLPYL+KVF+GH +K+VPILVGA+N++NEAMYG+L +KY+DDP NFF
Sbjct: 121 DLSVDEAEHSMEMHLPYLSKVFQGHNVKVVPILVGALNSQNEAMYGQLLSKYLDDPKNFF 180

Query: 181 SVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTIC 240
           S+SSDFCHWG+RF+Y +YDK HG IHKSIEALD+MGM+IIETG+PDAFK+YL EY+NTIC
Sbjct: 181 SISSDFCHWGTRFSYTYYDKSHGAIHKSIEALDRMGMEIIETGNPDAFKQYLQEYENTIC 240

Query: 241 GRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVDA 291
           GRHPISVFL ML +CSTKIKI F+RYEQSSQCK+ RDSSVSYASAAAKVD 
Sbjct: 241 GRHPISVFLSMLKHCSTKIKIGFVRYEQSSQCKSMRDSSVSYASAAAKVDT 291

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115475776|ref|NP_001061484.1| Os08g0299000 [Oryza sativa Japonica Group] gi|50508226|dbj|BAD31730.1| unknown protein [Oryza sativa Japonica Group] gi|113623453|dbj|BAF23398.1| Os08g0299000 [Oryza sativa Japonica Group] gi|215678729|dbj|BAG95166.1| unnamed protein product [Oryza sativa Japonica Group] gi|215692469|dbj|BAG87889.1| unnamed protein product [Oryza sativa Japonica Group] gi|215708833|dbj|BAG94102.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640303|gb|EEE68435.1| hypothetical protein OsJ_26808 [Oryza sativa Japonica Group]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/291 (79%), Positives = 267/291 (91%)

Query: 1   MEKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYA 60
           ME++RRASHAGSWYT+N+++L EELDGWLR AGL KSP+VR VIAPHAGYSYSGR AAYA
Sbjct: 1   MERVRRASHAGSWYTNNARKLDEELDGWLRAAGLTKSPDVRAVIAPHAGYSYSGRCAAYA 60

Query: 61  FGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELM 120
           FGNIDPT+ISRVFLLGPSHHYYTPKCAL+ AT+Y TPIGDLP+D EVIEEL ATGKF+ M
Sbjct: 61  FGNIDPTNISRVFLLGPSHHYYTPKCALTRATIYSTPIGDLPVDHEVIEELNATGKFDFM 120

Query: 121 DICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFF 180
           D+ VDEAEHSMEMHLPYL+KVF+GH +K+VPILVGA+N++NEAMYG+L +KY+DDP NFF
Sbjct: 121 DLSVDEAEHSMEMHLPYLSKVFQGHNVKVVPILVGALNSQNEAMYGQLLSKYLDDPKNFF 180

Query: 181 SVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTIC 240
           S+SSDFCHWG+RF+Y +YDK HG IHKSIEALD+MGM+IIETG+PDAFK+YL EY+NTIC
Sbjct: 181 SISSDFCHWGTRFSYTYYDKSHGAIHKSIEALDRMGMEIIETGNPDAFKQYLQEYENTIC 240

Query: 241 GRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVDA 291
           GRHPISVFL ML +C TKIKI F+RYEQSSQCK+ RDSSVSYASAAAKVD 
Sbjct: 241 GRHPISVFLSMLKHCLTKIKIGFVRYEQSSQCKSMRDSSVSYASAAAKVDT 291

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2059561	291	AT2G25280 "AT2G25280" [Arabido	0.996	0.996	0.724	6.9e-118
RGD|1309929	297	Memo1 "mediator of cell motili	0.934	0.915	0.489	3.3e-70
MGI|MGI:1924140	297	Memo1 "mediator of cell motili	0.934	0.915	0.485	5.5e-70
UNIPROTKB|Q9Y316	297	MEMO1 "Protein MEMO1" [Homo sa	0.934	0.915	0.485	7e-70
UNIPROTKB|F2Z5F8	297	MEMO1 "Uncharacterized protein	0.934	0.915	0.485	7e-70
UNIPROTKB|Q4R6D9	297	MEMO1 "Protein MEMO1" [Macaca	0.934	0.915	0.485	7e-70
UNIPROTKB|E1C6C0	297	MEMO1 "Uncharacterized protein	0.934	0.915	0.482	1.1e-69
ZFIN|ZDB-GENE-030131-5571	297	memo1 "mediator of cell motili	0.934	0.915	0.492	3e-69
UNIPROTKB|Q2HJH7	285	MEMO1 "Protein MEMO1" [Bos tau	0.910	0.929	0.475	1.7e-66
UNIPROTKB|F1LNE5	278	Memo1 "Protein MEMO1" [Rattus	0.883	0.924	0.479	2.9e-64

TAIR|locus:2059561 AT2G25280 "AT2G25280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
 Identities = 210/290 (72%), Positives = 241/290 (83%)

Query:     1 MEKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHXXXXXXXXXXXXX 60
             MEKIR+ +HAGSWYTDN  +L+ +L+ WL   GL KSP+VRGVIAPH             
Sbjct:     1 MEKIRQPTHAGSWYTDNPTKLSSDLEEWLNATGLTKSPDVRGVIAPHAGYSYSGRAAAYA 60

Query:    61 FGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELM 120
             F NIDPT+ISR+FLLGPSHH+YTPKCALSTATVYKTPIG+LP+D+E+I+E++A GKF +M
Sbjct:    61 FANIDPTNISRIFLLGPSHHFYTPKCALSTATVYKTPIGNLPVDVEMIKEIRAMGKFGMM 120

Query:   121 DICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFF 180
             D+ VDEAEHSMEMHLPYLAKVFEG+ +K+VPILVGAV+ ENEAMYG L AKYVDDP NFF
Sbjct:   121 DLRVDEAEHSMEMHLPYLAKVFEGNNVKVVPILVGAVSPENEAMYGELLAKYVDDPKNFF 180

Query:   181 SVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTIC 240
             SVSSDFCHWGSRFNYMHYD  HG IHKSIEALDK GMDIIETGDPDAFKKYLLE++NTIC
Sbjct:   181 SVSSDFCHWGSRFNYMHYDNTHGAIHKSIEALDKKGMDIIETGDPDAFKKYLLEFENTIC 240

Query:   241 GRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDXXXXXXXXXXKVD 290
             GRHPIS+FLHML + S+KIKI FLRYEQSSQC+T RD          K++
Sbjct:   241 GRHPISIFLHMLKHSSSKIKINFLRYEQSSQCQTMRDSSVSYASAAAKLE 290

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|1309929 Memo1 "mediator of cell motility 1" [Rattus norvegicus (taxid:10116)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 136/278 (48%), Positives = 176/278 (63%)

Query:     5 RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHXXXXXXXXXXXXXFGNI 64
             R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPH             +  +
Sbjct:     8 REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 66

Query:    65 DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
             DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  
Sbjct:    67 DPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQT 126

Query:   125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
             DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F V
Sbjct:   127 DEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVV 186

Query:   183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
             SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGR
Sbjct:   187 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGR 246

Query:   243 HPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKTKRD 277
             HPI V L+    L      +   FL Y QSSQC++ +D
Sbjct:   247 HPIGVLLNAITELQKSGMNMSFSFLNYAQSSQCRSWQD 284

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0032886 "regulation of microtubule-based process" evidence=IEA;ISO;ISS

MGI|MGI:1924140 Memo1 "mediator of cell motility 1" [Mus musculus (taxid:10090)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 135/278 (48%), Positives = 176/278 (63%)

Query:     5 RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHXXXXXXXXXXXXXFGNI 64
             R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPH             +  +
Sbjct:     8 REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 66

Query:    65 DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
             DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  
Sbjct:    67 DPSVTRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQT 126

Query:   125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
             DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F V
Sbjct:   127 DEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVV 186

Query:   183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
             SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGR
Sbjct:   187 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGR 246

Query:   243 HPISVFLHMLGNCSTK---IKIKFLRYEQSSQCKTKRD 277
             HPI V L+ +         +   FL Y QSSQC++ +D
Sbjct:   247 HPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRSWQD 284

GO:0005634 "nucleus" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0032886 "regulation of microtubule-based process" evidence=ISO

GO:0042277 "peptide binding" evidence=ISO

UNIPROTKB|Q9Y316 MEMO1 "Protein MEMO1" [Homo sapiens (taxid:9606)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 135/278 (48%), Positives = 175/278 (62%)

Query:     5 RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHXXXXXXXXXXXXXFGNI 64
             R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPH             +  +
Sbjct:     8 REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 66

Query:    65 DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
             DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  
Sbjct:    67 DPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQT 126

Query:   125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
             DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F V
Sbjct:   127 DEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVV 186

Query:   183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
             SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGR
Sbjct:   187 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGR 246

Query:   243 HPISVFLHMLGNCSTK---IKIKFLRYEQSSQCKTKRD 277
             HPI V L+ +         +   FL Y QSSQC+  +D
Sbjct:   247 HPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQD 284

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0032886 "regulation of microtubule-based process" evidence=IMP

UNIPROTKB|F2Z5F8 MEMO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 135/278 (48%), Positives = 175/278 (62%)

Query:     5 RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHXXXXXXXXXXXXXFGNI 64
             R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPH             +  +
Sbjct:     8 REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 66

Query:    65 DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
             DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  
Sbjct:    67 DPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQT 126

Query:   125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
             DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F V
Sbjct:   127 DEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVV 186

Query:   183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
             SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGR
Sbjct:   187 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGR 246

Query:   243 HPISVFLHMLGNCSTK---IKIKFLRYEQSSQCKTKRD 277
             HPI V L+ +         +   FL Y QSSQC+  +D
Sbjct:   247 HPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQD 284

GO:0032886 "regulation of microtubule-based process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q4R6D9 MEMO1 "Protein MEMO1" [Macaca fascicularis (taxid:9541)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 135/278 (48%), Positives = 175/278 (62%)

Query:     5 RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHXXXXXXXXXXXXXFGNI 64
             R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPH             +  +
Sbjct:     8 REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 66

Query:    65 DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
             DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  
Sbjct:    67 DPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQT 126

Query:   125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
             DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F V
Sbjct:   127 DEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVV 186

Query:   183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
             SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGR
Sbjct:   187 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGR 246

Query:   243 HPISVFLHMLGNCSTK---IKIKFLRYEQSSQCKTKRD 277
             HPI V L+ +         +   FL Y QSSQC+  +D
Sbjct:   247 HPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQD 284

GO:0032886 "regulation of microtubule-based process" evidence=ISS

UNIPROTKB|E1C6C0 MEMO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 134/278 (48%), Positives = 175/278 (62%)

Query:     5 RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHXXXXXXXXXXXXXFGNI 64
             R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPH             +  +
Sbjct:     8 REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 66

Query:    65 DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
             DP    ++F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  
Sbjct:    67 DPNITRKIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQT 126

Query:   125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
             DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F V
Sbjct:   127 DEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSEAKEQEFGKLFSKYLADPSNLFVV 186

Query:   183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
             SSDFCHWG RF Y +YD+  G I++SIE LDKMGM+IIE  DP +F  YL +Y NTICGR
Sbjct:   187 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMNIIEQLDPVSFSNYLKKYHNTICGR 246

Query:   243 HPISVFLHMLGNCSTK---IKIKFLRYEQSSQCKTKRD 277
             HPI V L+ +         +   FL Y QSSQC+  +D
Sbjct:   247 HPIGVLLNAINELQKNGMNMSFSFLNYAQSSQCRNWQD 284

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0032886 "regulation of microtubule-based process" evidence=IEA

ZFIN|ZDB-GENE-030131-5571 memo1 "mediator of cell motility 1" [Danio rerio (taxid:7955)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 137/278 (49%), Positives = 172/278 (61%)

Query:     5 RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHXXXXXXXXXXXXXFGNI 64
             R ASHAGSWYT +  +L  +L+GWL +A     P  R +IAPH             +  +
Sbjct:     8 REASHAGSWYTASGSQLNAQLEGWLSQAQSIAGP-ARAIIAPHAGYTYCGACAAHAYKQV 66

Query:    65 DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
             DP+   RVF+LGPSHH    +CALS A VY+TP+ DL +D +V  +L  TG FE M +  
Sbjct:    67 DPSITRRVFILGPSHHVPLSRCALSPAEVYRTPLYDLRIDQKVYADLWKTGMFERMSLQT 126

Query:   125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
             DE EHS+EMHLPY AK  E H     IVP+LVGA++   E  YG+L +KY+ DPSN F +
Sbjct:   127 DEDEHSIEMHLPYTAKAMENHKDEFSIVPVLVGALSGSKEQEYGKLLSKYLADPSNLFII 186

Query:   183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
             S DFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGR
Sbjct:   187 SPDFCHWGQRFRYTYYDESQGEIYRSIEHLDKMGMGIIEQLDPISFSNYLKKYHNTICGR 246

Query:   243 HPISVFLHMLGNCSTK---IKIKFLRYEQSSQCKTKRD 277
             HPI V L+ +         +   FL Y QSSQC+   D
Sbjct:   247 HPIGVLLNAVAELKKNGIDMNFSFLNYAQSSQCRNWSD 284

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2HJH7 MEMO1 "Protein MEMO1" [Bos taurus (taxid:9913)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 128/269 (47%), Positives = 171/269 (63%)

Query:     5 RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHXXXXXXXXXXXXXFGNI 64
             R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPH             +  +
Sbjct:     8 REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 66

Query:    65 DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
             DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  
Sbjct:    67 DPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQT 126

Query:   125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
             DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ +PSN F V
Sbjct:   127 DEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLAEPSNLFVV 186

Query:   183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
             SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGR
Sbjct:   187 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGR 246

Query:   243 HPISVFLHMLGNCSTK-IKIKFLRYEQSS 270
             HPI V L+ +       + + F  ++Q+S
Sbjct:   247 HPIGVLLNAITELQKNGMNMSFSFFQQAS 275

GO:0032886 "regulation of microtubule-based process" evidence=ISS

UNIPROTKB|F1LNE5 Memo1 "Protein MEMO1" [Rattus norvegicus (taxid:10116)]

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 126/263 (47%), Positives = 165/263 (62%)

Query:    20 RLAEELDGWLREAGLPKSPEVRGVIAPHXXXXXXXXXXXXXFGNIDPTSISRVFLLGPSH 79
             +L  +L+GWL +    K P  R +IAPH             +  +DP+   R+F+LGPSH
Sbjct:     4 QLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQVDPSITRRIFILGPSH 62

Query:    80 HYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLA 139
             H    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  DE EHS+EMHLPY A
Sbjct:    63 HVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTA 122

Query:   140 KVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMH 197
             K  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F VSSDFCHWG RF Y +
Sbjct:   123 KAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSY 182

Query:   198 YDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHM---LGN 254
             YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGRHPI V L+    L  
Sbjct:   183 YDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAITELQK 242

Query:   255 CSTKIKIKFLRYEQSSQCKTKRD 277
                 +   FL Y QSSQC++ +D
Sbjct:   243 SGMNMSFSFLNYAQSSQCRSWQD 265

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0032886 "regulation of microtubule-based process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P47085	YJX8_YEAST	No assigned EC number	0.3541	0.9793	0.8431	yes	no
Q803S3	MEMO1_DANRE	No assigned EC number	0.5275	0.9759	0.9562	yes	no
Q6DJ03	MEMO1_XENTR	No assigned EC number	0.5344	0.9759	0.9562	yes	no
Q9Y316	MEMO1_HUMAN	No assigned EC number	0.5241	0.9759	0.9562	yes	no
Q6GNT9	MEMO1_XENLA	No assigned EC number	0.5310	0.9759	0.9562	N/A	no
Q2HJH7	MEMO1_BOVIN	No assigned EC number	0.5055	0.9106	0.9298	yes	no
Q4QQR9	MEMO1_RAT	No assigned EC number	0.5241	0.9759	0.9562	yes	no
Q10212	YAY4_SCHPO	No assigned EC number	0.4115	0.9690	0.9126	yes	no
Q4R6D9	MEMO1_MACFA	No assigned EC number	0.5241	0.9759	0.9562	N/A	no
Q91VH6	MEMO1_MOUSE	No assigned EC number	0.5241	0.9759	0.9562	yes	no
Q54NZ1	MEMO1_DICDI	No assigned EC number	0.5212	0.9587	0.9620	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
cd07361	266	cd07361, MEMO_like, Memo (mediator of ErbB2-driven	1e-120
pfam01875	274	pfam01875, Memo, Memo-like protein	2e-76
COG1355	279	COG1355, COG1355, Predicted dioxygenase [General f	7e-66
TIGR04336	269	TIGR04336, AmmeMemoSam_B, AmmeMemoRadiSam system p	9e-56
cd07320	260	cd07320, Extradiol_Dioxygenase_3B_like, Subunit B	9e-33
PRK00782	267	PRK00782, PRK00782, hypothetical protein; Provisio	3e-28

>gnl|CDD|153373 cd07361, MEMO_like, Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility

 Score =  344 bits (886), Expect = e-120
 Identities = 111/283 (39%), Positives = 151/283 (53%), Gaps = 18/283 (6%)

Query: 6   RASHAGSWYTDNSKRLAEELDGWLREAGLPKSPE-VRGVIAPHAGYSYSGRAAAYAFGNI 64
             + AGS+Y  + + L  +L+ +L  A  P   E  + +I PHAGY YSG  AA+A+  +
Sbjct: 1   PPAVAGSFYPADPEELRRQLEAFLAAAPGPPPKEPPKAIIVPHAGYVYSGPVAAHAYAAL 60

Query: 65  DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
           DP    RV +LGPSH  Y   CALS+A  ++TP+GD+P+D E++EEL   G F + D   
Sbjct: 61  DPGKPKRVVILGPSHTGYGRGCALSSAGAWETPLGDVPVDRELVEELLKLGGFIVDDELA 120

Query: 125 DEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSS 184
            E EHS+E+ LP+L  +      KIVPILVG  + E         +KY+ DP     +SS
Sbjct: 121 HEEEHSLEVQLPFLQYLLPD--FKIVPILVGDQSPEAAEALAEALSKYLLDPDTLIVISS 178

Query: 185 DFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHP 244
           DF H+G R              +S E LD+  ++ I   DP+ F +YL E  NT CGR P
Sbjct: 179 DFSHYGPR--------------ESAERLDRKAIEAILALDPEGFYEYLRETGNTACGRGP 224

Query: 245 ISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAA 287
           I+V L         +K + L Y  S      RDS V YASAA 
Sbjct: 225 IAVLLEAAKE-LGALKAELLDYATSGDVSGDRDSVVGYASAAF 266

This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome. Length = 266

>gnl|CDD|216756 pfam01875, Memo, Memo-like protein

 Score =  233 bits (596), Expect = 2e-76
 Identities = 102/282 (36%), Positives = 147/282 (52%), Gaps = 11/282 (3%)

Query: 6   RASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNID 65
             + AGS+Y ++ + L  +L+ +  +   P     R +I PHAGY YSG  AA+A+  ++
Sbjct: 1   EPAVAGSFYPEDPEELRAQLEWFFLKNTGPGGITARKIICPHAGYVYSGPVAAHAYKALE 60

Query: 66  PTS-ISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
                 RV +LGP+H       ++S    ++TP+GD+ +D E++EEL      + +D   
Sbjct: 61  SDGEPERVVILGPNHTGLGSPVSVSPFGEWETPLGDVKVDEELVEELVKKSPIDDLDELA 120

Query: 125 DEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPS-NFFSVS 183
              EHS+E+ LP+L  +F+    KIVPILVG  + E     G   A+ + DP  N    S
Sbjct: 121 HLYEHSLEVQLPFLQYLFDEAEFKIVPILVGMQDPETAKELGEAIAEVIKDPGRNLVIAS 180

Query: 184 SDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRH 243
           SDF H+G RF   H       I +SI   D++G+  IE  + DAF +YL   +NTICG  
Sbjct: 181 SDFSHYGRRFGLPH------EIAESIR--DRIGIKRIEELNEDAFYEYLSGTNNTICGYG 232

Query: 244 PISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASA 285
           PI+V L  L     K + K L Y  S       DS V YASA
Sbjct: 233 PIAVILIALKKLGAK-EAKLLDYATSGDVTGDTDSVVGYASA 273

This family contains members from all branches of life. The molecular function of this protein is unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton. Length = 274

>gnl|CDD|224274 COG1355, COG1355, Predicted dioxygenase [General function prediction only]

 Score =  207 bits (528), Expect = 7e-66
 Identities = 84/291 (28%), Positives = 129/291 (44%), Gaps = 24/291 (8%)

Query: 3   KIRRASHAGSWYTDNSKRLAEELDGWLREAGLPK-------SPEVRGVIAPHAGYSYSGR 55
           KIR  + AG +Y  + + L ++++ +      P          +  G++ PHAGY YSG 
Sbjct: 2   KIREPAVAGQFYPSDPEELLKQIESFFGHNFGPGTLPETGFDRKAIGIVVPHAGYRYSGP 61

Query: 56  AAAYAFGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATG 115
            AA+ +  +D      V +LGP+H       ++S    ++TP+GD+ +D E+ EEL    
Sbjct: 62  TAAHVYSALDEGEPDTVVILGPNHTGLGSPVSVSPEGEWETPLGDVKVDSELAEELVKHS 121

Query: 116 KFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDD 175
               +D      EHS+E+ LP+L  +F     KIVPI +G  + E     GR  AK + +
Sbjct: 122 GIIDLDELAHLYEHSIEVQLPFLQYLFGDE-FKIVPICMGMQDKEVARDIGRAIAKVIKE 180

Query: 176 PSN-FFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLE 234
             +     SSDF H+                   +   D++ +  I   D D F + L  
Sbjct: 181 LGDALIIASSDFTHY--------------EPQDIVRRKDRILIKAILALDLDGFYELLER 226

Query: 235 YDNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASA 285
            + T+CG  PI+V L        K + K L Y  S       DS V YAS 
Sbjct: 227 TNATMCGYGPIAVLLEASKKLGAK-EAKLLDYATSGDVTGDTDSVVGYASI 276

Length = 279

>gnl|CDD|234551 TIGR04336, AmmeMemoSam_B, AmmeMemoRadiSam system protein B

 Score =  180 bits (460), Expect = 9e-56
 Identities = 85/289 (29%), Positives = 127/289 (43%), Gaps = 28/289 (9%)

Query: 5   RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPE-VRGVIAPHAGYSYSGRAAAYAFGN 63
           R  + AG +Y  + + L E+++ +L +A     P    G+I PHAGY YSG  AA+A+  
Sbjct: 1   RPPAVAGRFYPGDPEELREQIEEFLSDAPPEGGPGRAPGLIVPHAGYVYSGPVAAHAYAA 60

Query: 64  IDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDIC 123
           +       V LLGP+H  Y    AL     ++TP+GD+P+D E+ EEL          I 
Sbjct: 61  LAKGRPETVVLLGPNHTGYGSGIALPPEGSWETPLGDVPVDEELAEELLERSPV----IE 116

Query: 124 VDEA----EHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYV--DDPS 177
           +D+     EHS+E+ LP+L   F     KIVPI+VG  + E  A  G   A+ +      
Sbjct: 117 LDDLAHLREHSLEVQLPFLQYFFPD--FKIVPIVVGDQSPEVAAALGEALAEAIKELGRD 174

Query: 178 NFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDN 237
                SSD  H+                ++    LD+  ++ I   DP+     + E + 
Sbjct: 175 VLIVASSDLSHYEP--------------YEEARRLDRAAIEAILALDPEGLYDVVAEKNI 220

Query: 238 TICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAA 286
           ++CG  PI+  L          K + L Y  S          V YAS  
Sbjct: 221 SMCGVGPIAALLEAAKRLGAL-KAELLDYATSGDVSGDYSRVVGYASIV 268

Members of this protein family belong to the same domain family as the mammalian protein Memo (Mediator of ErbB2-driven cell MOtility). Members of the present family occur as part of a three gene system with an uncharacterized radical SAM enzyme and a homolog of the mammalian protein AMMECR1, a mammalian protein named for AMME - Alport syndrome, Mental Retardation, Midface hypoplasia, and Elliptocytosis. Memo in humans has protein-protein interaction activity with binding of phosphorylated Try, but members of this family may be active as enzymes, as suggested by homology to a class of nonheme iron dioxygenases. Length = 269

>gnl|CDD|153371 cd07320, Extradiol_Dioxygenase_3B_like, Subunit B of Class III Extradiol ring-cleavage dioxygenases

 Score =  120 bits (303), Expect = 9e-33
 Identities = 60/275 (21%), Positives = 94/275 (34%), Gaps = 45/275 (16%)

Query: 41  RGVIAPHAGYSYSGRAAAYAFGNIDPTSIS---------RVFLLGPSHHYYTPKCALSTA 91
             +I PH    Y+         +  P  IS          + ++ P H       A++ A
Sbjct: 1   LAIIIPHGPALYAAEDTGKTRNDYQPIEISKRIKEKRPDTIIVVSPHHLVIISATAITCA 60

Query: 92  TVYKTPI-------------GDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYL 138
             ++T               GD  L  E+ EEL       +++  +D  +H   + L Y+
Sbjct: 61  ETFETADSGQWGRRPVYDVKGDPDLAWEIAEELIKEIPVTIVNE-MDGLDHGTLVPLSYI 119

Query: 139 AKVFEGHLIKIVPILVGAVN--AENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWGSRFN 194
               +    K++P+ VG +         +G+     V+  D       S D  H      
Sbjct: 120 FG--DPWDFKVIPLSVGVLVPPFAKLFEFGKAIRAAVEPSDLRVHVVASGDLSHQLQGDR 177

Query: 195 YMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKK---YLLEYDNTICGRHPISVFLHM 251
                      +   E  DK  +D +E  DP  FK    YL   + T CG HP+ + L  
Sbjct: 178 P----SSQSGYYPIAEEFDKYVIDNLEELDPVEFKNMHQYLTISNATPCGFHPLLILLGA 233

Query: 252 LGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAA 286
           L     + K  F  Y   S       SS  YA+A 
Sbjct: 234 LD--GKERKDLFTVYGIPS-------SSTGYAAAI 259

Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class III enzymes. Enzymes belonging to this family include Protocatechuate 4,5-dioxygenase (LigAB), 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarB), 4,5-DOPA Dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase, and 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD). There are also some family members that do not show the typical dioxygenase activity. Length = 260

>gnl|CDD|234836 PRK00782, PRK00782, hypothetical protein; Provisional

 Score =  109 bits (274), Expect = 3e-28
 Identities = 76/289 (26%), Positives = 125/289 (43%), Gaps = 26/289 (8%)

Query: 4   IRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGN 63
           +R  + AG +Y  + + L + L  + R+ G     ++ G + PHAGY YSGR AA  +  
Sbjct: 2   MRYPAVAGQFYPLSPEELLKMLSEFFRDLGEESR-KIIGAVVPHAGYVYSGRTAARVYAA 60

Query: 64  IDPTSISRVF-LLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDI 122
           +     +  F ++GP+H       A+S    +KTP+GD+ +D E+ + L        +D 
Sbjct: 61  LPE---AETFVIIGPNHTGLGSPVAVSPEG-WKTPLGDVEVDEELAKAL--ASGIIDLDE 114

Query: 123 CVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVD--DPSNFF 180
              + EHS+E+ LP+L  +F G   KIVPI +G  + E     G   A+ ++        
Sbjct: 115 LAHKYEHSIEVQLPFLQYLF-GKDFKIVPICLGMQDEETAREVGEAIAEAIEELGKKVVV 173

Query: 181 SVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTIC 240
             SSDF H      Y   ++         +  D + ++ I   D D F   +   + T C
Sbjct: 174 IASSDFTH------YEPAER--------AKEKDMILIEAILDLDVDGFYDEIYRMNATAC 219

Query: 241 GRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKV 289
           G  PI+  +          K + L Y  S        + V YA+   + 
Sbjct: 220 GYGPIAAMMTYSKKLGAS-KAELLHYATSGDVSGDTSAVVGYAAIVFRR 267

Length = 267

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
PF01875	276	Memo: Memo-like protein; InterPro: IPR002737 This	100.0
COG1355	279	Predicted dioxygenase [General function prediction	100.0
PRK00782	267	hypothetical protein; Provisional	100.0
cd07361	266	MEMO_like Memo (mediator of ErbB2-driven cell moti	100.0
KOG3086	296	consensus Predicted dioxygenase [General function	100.0
cd07320	260	Extradiol_Dioxygenase_3B_like Subunit B of Class I	100.0
cd07951	256	ED_3B_N_AMMECR1 The N-terminal domain, an extradio	100.0
cd07952	256	ED_3B_like Uncharacterized class III extradiol dio	100.0
PRK03881	467	hypothetical protein; Provisional	99.98
PRK13358	269	protocatechuate 4,5-dioxygenase subunit beta; Prov	99.97
cd07365	310	MhpB_like Subunit B of the Class III Extradiol rin	99.97
cd07359	271	PCA_45_Doxase_B_like Subunit B of the Class III Ex	99.95
cd07372	294	2A5CPDO_B The beta subunit of the Class III extrad	99.94
cd07370	280	HPCD The Class III extradiol dioxygenase, homoprot	99.94
PRK13370	313	mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase	99.94
cd07362	272	HPCD_like Class III extradiol dioxygenases with si	99.92
PRK13363	335	protocatechuate 4,5-dioxygenase subunit beta; Prov	99.91
cd07373	271	2A5CPDO_A The alpha subunit of the Class III extra	99.91
TIGR02298	282	HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase	99.9
cd07371	268	2A5CPDO_AB The alpha and beta subunits of the Clas	99.9
cd07367	268	CarBb CarBb is the B subunit of the Class III Extr	99.89
PRK13364	278	protocatechuate 4,5-dioxygenase subunit beta; Prov	99.88
cd07366	328	3MGA_Dioxygenase Subunit B of the Class III Extrad	99.88
cd07368	277	PhnC_Bs_like PhnC is a Class III Extradiol ring-cl	99.88
cd07369	329	PydA_Rs_like PydA is a Class III Extradiol ring-cl	99.86
PRK13365	279	protocatechuate 4,5-dioxygenase subunit beta; Prov	99.84
cd07950	277	Gallate_Doxase_N The N-terminal domain of the Clas	99.84
cd07949	276	PCA_45_Doxase_B_like_1 The B subunit of unknown Cl	99.84
PRK13366	284	protocatechuate 4,5-dioxygenase subunit beta; Prov	99.82
PRK13367	420	protocatechuate 4,5-dioxygenase; Provisional	99.82
PF02900	272	LigB: Catalytic LigB subunit of aromatic ring-open	99.79
PRK13373	344	putative dioxygenase; Provisional	99.78
cd07364	277	PCA_45_Dioxygenase_B Subunit B of the Class III ex	99.78
cd07363	253	45_DOPA_Dioxygenase The Class III extradiol dioxyg	99.77
PRK13372	444	pcmA protocatechuate 4,5-dioxygenase; Provisional	99.67
COG3885	261	Uncharacterized conserved protein [Function unknow	99.6
COG3384	268	Aromatic ring-opening dioxygenase, catalytic LigB	99.34
PRK10628	246	LigB family dioxygenase; Provisional	98.98

>PF01875 Memo: Memo-like protein; InterPro: IPR002737 This entry contains proteins from all branches of life

Probab=100.00  E-value=3.5e-79  Score=556.21  Aligned_cols=275  Identities=38%  Similarity=0.611  Sum_probs=206.8

Q ss_pred             ccCccccccCCCHHHHHHHHHHHHHhcCCCCCCCcceeeecCCchhchHHHHHHHHHhcCCCCCCEEEEECCCCCCCCCc
Q 022859            6 RASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYTPK   85 (291)
Q Consensus         6 ~~~~AG~~YP~~~~~L~~~l~~~~~~~~~~~~~~~~a~I~PHag~~ysg~~aa~ay~~l~~~~~~~VvIlGp~H~~~~~~   85 (291)
                      +|+|||+|||+|+++|+++|+.||.......  +++++|+|||||.|||++|+++|+.|+..+++|||||||||++.+++
T Consensus         1 ~pa~AG~fYp~~~~~L~~~l~~~~~~~~~~~--~~~~iI~PHAGy~ySG~~aa~ay~~l~~~~~~~vvilGpsH~~~~~~   78 (276)
T PF01875_consen    1 EPAVAGSFYPADPEELRAQLEAFLEKAPGPG--PARAIIVPHAGYVYSGPTAAHAYAALKESKPKRVVILGPSHTGYGDG   78 (276)
T ss_dssp             --TTTTTSS-S-HHHHHHHHH-HHHHTS-----S-SEEEE--S-HHHHHHHHHHHHTT--TTT--EEEEEEE-SSS--SS
T ss_pred             CCCcccCCCCCCHHHHHHHHHHHHhcCCCCC--CCCEEECCCccHHhHHHHHHHHHHHHhhcCCCEEEEECCCccCCCCC
Confidence            5899999999999999999999998765322  38999999999999999999999999988899999999999999999


Q ss_pred             eeEeCCCccccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchHHHHHHhcC-CCeeEEEEEeCCCCHHHHHH
Q 022859           86 CALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEG-HLIKIVPILVGAVNAENEAM  164 (291)
Q Consensus        86 ~~~~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlPfL~~~~~~-~~~~IVPi~vg~~~~~~~~~  164 (291)
                      +++++.+.|+||||+++||++++++|.+..++...++..|..|||||||||||||+||+ ++++||||+||..+.+.+++
T Consensus        79 ~~~~~~~~~~TPlG~v~vD~e~~~~L~~~~~~~~~~~~~h~~EHSlEvqlPFLq~~~~~~~~~~IVPI~vg~~~~~~~~~  158 (276)
T PF01875_consen   79 IAVSPFDSWETPLGEVPVDSELAEELAKNFPFFEFDDEAHEEEHSLEVQLPFLQYLFPDRRDFKIVPILVGDQSPETAKE  158 (276)
T ss_dssp             EEE-SSSEE--SS--EEB-HHHHHHHHHTT-E-EE--HHHHH--TTGGGHHHHHHHTGGGTS-EEEEEEE-S--HHHHHH
T ss_pred             eEeccCCeEECCCcccccCHHHHHHHHhcCCCcccchhhccccCcEEEHHHHHHHHhccCCceEEEEEEecCCCHHHHHH
Confidence            99999999999999999999999999998776666778899999999999999999973 24999999999999999999


Q ss_pred             HHHHHHHhhCCCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCChhH
Q 022859          165 YGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHP  244 (291)
Q Consensus       165 l~~~L~~~~~~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~  244 (291)
                      ++++|.+++++++++||+||||||||++||+.|.   ..++.+..+++|+++|++|+++|+++|++.+.++++++||.+|
T Consensus       159 ~a~~L~~~~~~~~~liV~SsD~sHyg~rfg~~~~---~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~t~CG~~p  235 (276)
T PF01875_consen  159 LAEALAEYLKDEGTLIVASSDFSHYGPRFGDAPK---PEEIAEKIEALDREAIEAIEALDPEGFYEYLKETNNTACGRGP  235 (276)
T ss_dssp             HHHHHHHHHTSTTEEEEEE----EEBGGGT--GG---GSSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH----TTHHH
T ss_pred             HHHHHHHHHcCCCEEEEEeCccccccccccCCCC---CHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHcCCceechHH
Confidence            9999999999888999999999999999998764   2344566677899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEE
Q 022859          245 ISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAA  286 (291)
Q Consensus       245 i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~  286 (291)
                      |+++|.+++.++. .++++|+|+||+|+++++++||||+|++
T Consensus       236 i~~~l~~~~~~~~-~~~~ll~Y~~S~d~~~~~~svVgYas~v  276 (276)
T PF01875_consen  236 IAVLLEAAKALGA-WKGELLDYATSGDVSGDYDSVVGYASIV  276 (276)
T ss_dssp             HHHHHHHHHHHHC-EEEEEEEEEESS---STT--EEEEEEE-
T ss_pred             HHHHHHHHHHcCC-CeEEEeeeccccCCCCCCCCEEeccccC
Confidence            9999999999885 4899999999999999999999999985

The molecular function of these proteins are unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family []. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton [].; PDB: 3BD0_C 3BCZ_C.

>COG1355 Predicted dioxygenase [General function prediction only]

Probab=100.00  E-value=3.6e-78  Score=533.49  Aligned_cols=270  Identities=31%  Similarity=0.500  Sum_probs=248.8

Q ss_pred             CCcccCccccccCCCHHHHHHHHHHHHHh-cC----CCC--CCCcceeeecCCchhchHHHHHHHHHhcCCCCCCEEEEE
Q 022859            3 KIRRASHAGSWYTDNSKRLAEELDGWLRE-AG----LPK--SPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLL   75 (291)
Q Consensus         3 ~~R~~~~AG~~YP~~~~~L~~~l~~~~~~-~~----~~~--~~~~~a~I~PHag~~ysg~~aa~ay~~l~~~~~~~VvIl   75 (291)
                      ++|+|+|||+|||+++++|.++|+.|+-. -.    +.+  ..+++|+|+|||||.|||++|++.|+.|...+|+|||||
T Consensus         2 ~iR~pavAG~fYp~~~eeL~~~i~~~~~~~~~p~~l~~~~~~~~~~~~v~PHAGy~ySG~taa~~y~~l~~~~~~~vVIl   81 (279)
T COG1355           2 KIREPAVAGQFYPSDPEELLKQIESFFGHNFGPGTLPETGFDRKAIGIVVPHAGYRYSGPTAAHVYSALDEGEPDTVVIL   81 (279)
T ss_pred             CccccceeeeeccCCHHHHHHHHHhhhcccCCCCCCCcccccccceEEEcCCCCcEecchhHHHHHHHhhcCCCCEEEEE
Confidence            58999999999999999999999999732 11    111  246999999999999999999999999988899999999


Q ss_pred             CCCCCCCCCceeEeCCCccccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchHHHHHHhcCCCeeEEEEEeC
Q 022859           76 GPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVG  155 (291)
Q Consensus        76 Gp~H~~~~~~~~~~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg  155 (291)
                      ||||++...++++++.++|+||||+++||.|+++.|.+..++...|...|..|||||||||||||+|+ .+||||||+++
T Consensus        82 GPnHtg~g~~vsv~~~g~w~TPLG~v~vD~e~~~~l~~~~~~~~~D~~ah~~EHSiEvQlPFLqy~f~-~~fKIVPi~m~  160 (279)
T COG1355          82 GPNHTGLGSPVSVSPEGEWETPLGDVKVDSELAEELVKHSGIIDLDELAHLYEHSIEVQLPFLQYLFG-DEFKIVPICMG  160 (279)
T ss_pred             CCCCCCCCCceEEecCCccccCCCCeeeCHHHHHHHHHhcCCCCchhhhhhhhceEEeehHHHHHHcc-CCcEEEeEEEe
Confidence            99999999999999999999999999999999999999877766788899999999999999999996 48999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhCCC-CeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHh
Q 022859          156 AVNAENEAMYGRLFAKYVDDP-SNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLE  234 (291)
Q Consensus       156 ~~~~~~~~~l~~~L~~~~~~~-~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~  234 (291)
                      .++.+.++++|++|.+++++. +++||+|||||||.      |        ++.++++|+.+|++|+++|.++|++.+.+
T Consensus       161 ~q~~~~a~~ig~~i~k~i~e~~~~liIaSSDf~HYe------p--------~~~~~~~D~~~I~~I~~~d~~g~~~~~~~  226 (279)
T COG1355         161 MQDKEVARDIGRAIAKVIKELGDALIIASSDFTHYE------P--------QDIVRRKDRILIKAILALDLDGFYELLER  226 (279)
T ss_pred             cccHHHHHHHHHHHHHHHhhcCCeEEEEecCccccC------c--------hhhhhhhHHHHHHHHHhcCHHHHHHHHHh
Confidence            999999999999999999864 69999999999993      3        37788999999999999999999999999


Q ss_pred             cCCCcCChhHHHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEEE
Q 022859          235 YDNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAK  288 (291)
Q Consensus       235 ~~~~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~  288 (291)
                      +++++||.+||.++|.+++.+|. .++++|+|+||+|++++++++||||+++|+
T Consensus       227 ~n~t~CG~gpi~~~l~~~k~~g~-~~~~ll~ya~Sgdvtg~~~~vVgYAs~~~~  279 (279)
T COG1355         227 TNATMCGYGPIAVLLEASKKLGA-KEAKLLDYATSGDVTGDTDSVVGYASIVFY  279 (279)
T ss_pred             cCCccccccHHHHHHHHHHHcCc-ccceeecccccccccCCcccEEeeeeEEeC
Confidence            99999999999999999999986 479999999999999999999999999873

>PRK00782 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-75  Score=529.90  Aligned_cols=263  Identities=29%  Similarity=0.496  Sum_probs=241.0

Q ss_pred             CcccCccccccCCCHHHHHHHHHHHHHhcCCCCCCCcceeeecCCchhchHHHHHHHHHhcCCCCCCEEEEECCCCCCCC
Q 022859            4 IRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYT   83 (291)
Q Consensus         4 ~R~~~~AG~~YP~~~~~L~~~l~~~~~~~~~~~~~~~~a~I~PHag~~ysg~~aa~ay~~l~~~~~~~VvIlGp~H~~~~   83 (291)
                      +|+|+|||+|||+|+++|+++|+.||...+ ....+++|+|+|||||.|||++||++|+.+..  |++||||||||+..+
T Consensus         2 ~R~~~~AG~fYp~~~~~L~~~i~~~~~~~~-~~~~~~~~ii~PHAGy~ySG~~aa~ay~~l~~--p~~vvilGp~H~~~~   78 (267)
T PRK00782          2 MRYPAVAGQFYPLSPEELLKMLSEFFRDLG-EESRKIIGAVVPHAGYVYSGRTAARVYAALPE--AETFVIIGPNHTGLG   78 (267)
T ss_pred             ccCccccCCCCCCCHHHHHHHHHHHHhhCC-CCCCCceEEEeCCCCCcccHHHHHHHHHhcCC--CCEEEEECCCCCCCC
Confidence            799999999999999999999999997654 23356899999999999999999999999954  899999999999999


Q ss_pred             CceeEeCCCccccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCCCHHHHH
Q 022859           84 PKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEA  163 (291)
Q Consensus        84 ~~~~~~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~~~~~~~  163 (291)
                      +++++++.+ |+||||++++|.+++++|..  .+...++.+|..|||+||||||||+++ .++++||||++|.++.+++.
T Consensus        79 ~~~av~~~~-~~TPlG~v~vD~~l~~~L~~--~~~~~~~~ah~~EHSiEvqlPFLq~~~-~~~~~iVPI~vg~~~~~~~~  154 (267)
T PRK00782         79 SPVAVSPEG-WKTPLGDVEVDEELAKALAS--GIIDLDELAHKYEHSIEVQLPFLQYLF-GKDFKIVPICLGMQDEETAR  154 (267)
T ss_pred             CCeEEecCc-ccCCCcCCcCCHHHHHHHHH--hhhccchhhhhhhceEEecHHHhhHhh-cCCCeEEEEEcCCCCHHHHH
Confidence            999998777 99999999999999999982  233446678999999999999999996 24899999999999999999


Q ss_pred             HHHHHHHHhhC--CCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCC
Q 022859          164 MYGRLFAKYVD--DPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICG  241 (291)
Q Consensus       164 ~l~~~L~~~~~--~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG  241 (291)
                      ++|++|.++++  +++++||+|||||||++              ++.++++|+++|+.|+++|+++|++.+.++++++||
T Consensus       155 ~lg~~L~~~~~~~~~~vliIaSsDlSH~~~--------------~~~a~~~D~~~i~~I~~~d~~~l~~~~~~~~~~~CG  220 (267)
T PRK00782        155 EVGEAIAEAIEELGKKVVVIASSDFTHYEP--------------AERAKEKDMILIEAILDLDVDGFYDEIYRMNATACG  220 (267)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeCCCcCcCC--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCceEC
Confidence            99999999886  67899999999999964              277899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEEE
Q 022859          242 RHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAK  288 (291)
Q Consensus       242 ~~~i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~  288 (291)
                      .+||.++|.+++.+++ .++++|+|+||+|+++++++||||++++|+
T Consensus       221 ~~pi~~~l~~~~~~g~-~~~~ll~Y~~S~d~~~~~~~vVgYa~~~~~  266 (267)
T PRK00782        221 YGPIAAMMTYSKKLGA-SKAELLHYATSGDVSGDTSAVVGYAAIVFR  266 (267)
T ss_pred             HHHHHHHHHHHHhcCC-CeEEEeeecCccCCCCCCCccEEeeEEEEE
Confidence            9999999999999885 479999999999999999999999999985

>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility

Probab=100.00  E-value=5.3e-74  Score=520.36  Aligned_cols=265  Identities=41%  Similarity=0.689  Sum_probs=248.3

Q ss_pred             ccCccccccCCCHHHHHHHHHHHHHhcCC-CCCCCcceeeecCCchhchHHHHHHHHHhcCCCCCCEEEEECCCCCCCCC
Q 022859            6 RASHAGSWYTDNSKRLAEELDGWLREAGL-PKSPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYTP   84 (291)
Q Consensus         6 ~~~~AG~~YP~~~~~L~~~l~~~~~~~~~-~~~~~~~a~I~PHag~~ysg~~aa~ay~~l~~~~~~~VvIlGp~H~~~~~   84 (291)
                      +|+|||+|||+|+++|+++|+.|+...+. ....+++|+|+|||||.|||++|+++|+.|+..+||+||||||+|+..+.
T Consensus         1 ~~~~AG~fYp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~PHagy~ysG~~aa~ay~~l~~~~p~~vvilgP~H~~~~~   80 (266)
T cd07361           1 PPAVAGSFYPADPEELRRQLEAFLAAAPGPPPKEPPKAIIVPHAGYVYSGPVAAHAYAALDPGKPKRVVILGPSHTGYGR   80 (266)
T ss_pred             CCCccCCCCCCCHHHHHHHHHHHHHhCcccCCCCCceEEEeCCCCccccHHHHHHHHHHhccCCCCEEEEECCCCCCCCC
Confidence            58999999999999999999999987653 34568999999999999999999999999998899999999999999999


Q ss_pred             ceeEeCCCccccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCCCHHHHHH
Q 022859           85 KCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAM  164 (291)
Q Consensus        85 ~~~~~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~~~~~~~~  164 (291)
                      ++++++.+.|+||||++++|++++++|.+..++...+...|..|||+||||||||++++  +++||||+||.++.+.+.+
T Consensus        81 ~~~~~~~~~~~TPlG~v~vd~~l~~~L~~~~~~~~~~~~~~~~EHs~EvqLpfLq~~~~--~~~iVPi~vg~~~~~~~~~  158 (266)
T cd07361          81 GCALSSAGAWETPLGDVPVDRELVEELLKLGGFIVDDELAHEEEHSLEVQLPFLQYLLP--DFKIVPILVGDQSPEAAEA  158 (266)
T ss_pred             ceeeCCCCCeeCCCcCCccCHHHHHHHHhcCCccccCcchhhhhceeeeHHHHHHHHcC--CCeEEEEEeCCCCHHHHHH
Confidence            99999999999999999999999999999887776666789999999999999999996  8999999999999999999


Q ss_pred             HHHHHHHhhCCCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCChhH
Q 022859          165 YGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHP  244 (291)
Q Consensus       165 l~~~L~~~~~~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~  244 (291)
                      +|++|+++..+++++||+|||||||++              .+.++++|+++|+.|+++|+++|++.+.++++++||.+|
T Consensus       159 ~g~~l~~~~~~~~~~iV~SsDlSH~~~--------------~~~a~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~  224 (266)
T cd07361         159 LAEALSKYLLDPDTLIVISSDFSHYGP--------------RESAERLDRKAIEAILALDPEGFYEYLRETGNTACGRGP  224 (266)
T ss_pred             HHHHHHHHhcCCCeEEEEeCCCCCcCC--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCceECHHH
Confidence            999999987788999999999999965              278899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEE
Q 022859          245 ISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAA  287 (291)
Q Consensus       245 i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~  287 (291)
                      |.++|.+++.++. .++++|+|+||+++++++++||||++++|
T Consensus       225 i~~~l~~~~~~~~-~~~~ll~Y~~S~~~~~~~~~vVgYas~~~  266 (266)
T cd07361         225 IAVLLEAAKELGA-LKAELLDYATSGDVSGDRDSVVGYASAAF  266 (266)
T ss_pred             HHHHHHHHHhcCC-CEEEEeeecCcCCCCCCCCCeEeccEEeC
Confidence            9999999999884 48999999999999999999999999975

This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia

>KOG3086 consensus Predicted dioxygenase [General function prediction only]

Probab=100.00  E-value=3.9e-74  Score=494.66  Aligned_cols=285  Identities=59%  Similarity=1.008  Sum_probs=265.5

Q ss_pred             CcccCccccccCCCHHHHHHHHHHHHHhcCCCCCCCcceeeecCCchhchHHHHHHHHHhcCCCCCCEEEEECCCCCCCC
Q 022859            4 IRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYT   83 (291)
Q Consensus         4 ~R~~~~AG~~YP~~~~~L~~~l~~~~~~~~~~~~~~~~a~I~PHag~~ysg~~aa~ay~~l~~~~~~~VvIlGp~H~~~~   83 (291)
                      +|+|+|||+||-++.++|.+||+.||.++.... ..+|+||+|||||.|+|++||+||+.+..+..+||+||||+|+.++
T Consensus         5 ~~~AtHAGSWYt~~~~~Ls~QL~~wL~~~~~~~-~paRaiIaPHAGY~YcG~~Aa~ay~qvdps~v~RIFILGPSHHv~l   83 (296)
T KOG3086|consen    5 VVEATHAGSWYTASGPQLSAQLEGWLSQVTLTK-GPARAIIAPHAGYTYCGSCAAYAYKQVDPSNVQRIFILGPSHHVYL   83 (296)
T ss_pred             ccccccccccccCCHHHHHHHHHHHHhccCCCC-CCceEEEcCCCCcccchHHHHHHHhhcChhHeeEEEEecCcceeee
Confidence            459999999999999999999999998876433 3489999999999999999999999999999999999999999999


Q ss_pred             CceeEeCCCccccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchHHHHHHhcCCC--eeEEEEEeCCCCHHH
Q 022859           84 PKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAEN  161 (291)
Q Consensus        84 ~~~~~~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~--~~IVPi~vg~~~~~~  161 (291)
                      ++|++++.+.++||||+++||.++.++|.+...|..+|-...+.|||+|||||||.+.+...+  ++||||+||.++.++
T Consensus        84 ~~CalS~~s~yrTPLgdLkVD~~i~~eL~~tg~F~~Mdl~tde~EHSiEM~lP~lak~l~~~~~~~kivPilvg~ls~~~  163 (296)
T KOG3086|consen   84 SKCALSSASIYRTPLGDLKVDQKICKELWATGMFERMDLDTDEAEHSIEMQLPYLAKVLESRKDTVKIVPILVGALSPSV  163 (296)
T ss_pred             cchhhhhhhhhcCccccccccHHHHHHHHHcCCccccccccccchhhhhhhhHHHHHHHhhcCceEEEEeeEecccChHH
Confidence            999999999999999999999999999999988888888888999999999999998886555  999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCC
Q 022859          162 EAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICG  241 (291)
Q Consensus       162 ~~~l~~~L~~~~~~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG  241 (291)
                      ...+|+.|.++++|++++||+||||||||.||+|++|.....+|++.++.+|+..++.|+.+|++.|-+++++++|++||
T Consensus       164 e~~~g~lls~Yi~Dp~NlFvvSSDFCHWG~RF~yt~Yd~s~~~I~~sIe~lDk~gM~iiet~~pdaf~~YLk~~~NTICG  243 (296)
T KOG3086|consen  164 EQCYGKLLSKYIKDPSNLFVVSSDFCHWGRRFSYTYYDHSQGPIYESIENLDKQGMKIIETLDPDAFSEYLKKTQNTICG  243 (296)
T ss_pred             HHHHHHHHHHHhcCccceEEEeccccccccccccccccCCCchHHHHHHHHHHhhhhhhhcCChHHHHHHHHHhCCcccc
Confidence            99999999999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhC---CC-CCceEEEeecCCCCCCCCCCCeeEeeEEEEEe
Q 022859          242 RHPISVFLHMLGNC---ST-KIKIKFLRYEQSSQCKTKRDSSVSYASAAAKV  289 (291)
Q Consensus       242 ~~~i~~~l~~~~~~---~~-~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~~  289 (291)
                      +.||.++|.++..+   +. +.++++|.|+||..+..-.||+|+||+....+
T Consensus       244 r~PI~v~l~a~~~~~~~~~s~~~f~fl~YaQSs~~~~~~DSSVSYAsg~~~~  295 (296)
T KOG3086|consen  244 RHPISVILSALSHMRKAGPSKIKFKFLNYAQSSQVRSIDDSSVSYASGALTV  295 (296)
T ss_pred             CccHHHHHHHHHHHHhcCCCcceEeecccccccceeeccccceeeeeeeEec
Confidence            99999999866543   22 35799999999999999999999999988754

>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases

Probab=100.00  E-value=2.2e-39  Score=292.58  Aligned_cols=232  Identities=24%  Similarity=0.295  Sum_probs=191.2

Q ss_pred             ceeeecCCchhchHHHHHH---------HHHhcCCCCCCEEEEECCCCCCCCCceeEeCCCcccc---------CCCCCC
Q 022859           41 RGVIAPHAGYSYSGRAAAY---------AFGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKT---------PIGDLP  102 (291)
Q Consensus        41 ~a~I~PHag~~ysg~~aa~---------ay~~l~~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~T---------PlG~~~  102 (291)
                      .++++||+||.|++..+++         .++.+...+||+||||||+|....+.+++...+.|+|         |+|+++
T Consensus         1 ~~~~v~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~iviis~hh~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   80 (260)
T cd07320           1 LAIIIPHGPALYAAEDTGKTRNDYQPIEISKRIKEKRPDTIIVVSPHHLVIISATAITCAETFETADSGQWGRRPVYDVK   80 (260)
T ss_pred             CCCcccCCCcchhhcccccccCchHHHHHHHHHHHhCCCEEEEEeCCccccCCCEEEeecceeccccccccCCCCCcCCC
Confidence            3689999999999998766         4455655689999999999998888899988899999         999999


Q ss_pred             CcHHHHHHHHhcC--Ccee-cccccCccccccccchHHHHHHhcCCCeeEEEEEeCCC--CHHHHHHHHHHHHHhhC--C
Q 022859          103 LDLEVIEELKATG--KFEL-MDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAV--NAENEAMYGRLFAKYVD--D  175 (291)
Q Consensus       103 vD~~~~~~L~~~~--~~~~-~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~--~~~~~~~l~~~L~~~~~--~  175 (291)
                      +|++++++|.+..  ++.. .....|..|||+|||||||+..+  .+++||||.++..  +.+++.++|++|+++++  +
T Consensus        81 ~d~ela~~l~~~~~~~~~~~~~~~~~~~DHg~~vpl~~l~~~~--~~~piVpi~i~~~~~~~~~~~~lG~aL~~~~~~~~  158 (260)
T cd07320          81 GDPDLAWEIAEELIKEIPVTIVNEMDGLDHGTLVPLSYIFGDP--WDFKVIPLSVGVLVPPFAKLFEFGKAIRAAVEPSD  158 (260)
T ss_pred             CCHHHHHHHHHHHHhcCCEEEEcccccCCeeecccHHHHhCCC--CCCcEEEEEeeccCCCHHHHHHHHHHHHHHHHhcC
Confidence            9999999998754  2211 12222789999999999998754  3899999999998  89999999999999983  5


Q ss_pred             CCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHH---HHHhcCCCcCChhHHHHHHHHH
Q 022859          176 PSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKK---YLLEYDNTICGRHPISVFLHML  252 (291)
Q Consensus       176 ~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~---~~~~~~~~~CG~~~i~~~l~~~  252 (291)
                      ++++||+||||||++++|++...    ......++++|+++++.|+++|.+++++   ...+.+++.||..|+.++++++
T Consensus       159 ~~vliI~SGdlsH~~~~~~~~~~----~~~~~~~~efD~~~~~~l~~~d~~~l~~~~~~~~~~~~~~~g~~~~~~~~ga~  234 (260)
T cd07320         159 LRVHVVASGDLSHQLQGDRPSSQ----SGYYPIAEEFDKYVIDNLEELDPVEFKNMHQYLTISNATPCGFHPLLILLGAL  234 (260)
T ss_pred             CcEEEEEeCccccCCCCCCcccc----cCcCcchHHHHHHHHHHHHcCCHHHHhhcChHHHhcCCCccCHHHHHHHHHhc
Confidence            78999999999999998876311    0112567899999999999999999987   4556688999999999999998


Q ss_pred             hhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEE
Q 022859          253 GNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAA  287 (291)
Q Consensus       253 ~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~  287 (291)
                      +....  +.+++.|..+.       ++|||+++.|
T Consensus       235 ~~~~~--~~~~~~~~~~~-------~~vg~~~~~~  260 (260)
T cd07320         235 DGKER--KDLFTVYGIPS-------SSTGYAAAIL  260 (260)
T ss_pred             CCCcc--ceEEeecCCCC-------CCceEEEEEC
Confidence            77542  36677777763       8899999875

Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class

>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain

Probab=100.00  E-value=3.8e-32  Score=245.03  Aligned_cols=203  Identities=22%  Similarity=0.258  Sum_probs=168.8

Q ss_pred             CCCCCEEEEECCCCCCCCCceeEeCCCccccCCC---------CCCCcHHHHHHHHhcC---Cc--eecccccCcccccc
Q 022859           66 PTSISRVFLLGPSHHYYTPKCALSTATVYKTPIG---------DLPLDLEVIEELKATG---KF--ELMDICVDEAEHSM  131 (291)
Q Consensus        66 ~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~TPlG---------~~~vD~~~~~~L~~~~---~~--~~~d~~~~~~EHsl  131 (291)
                      ..+||+|||+||+|...+..+++.....|.||||         .+++|.+++++|.+..   ++  ...+...|..|||+
T Consensus        36 ~~~pd~ivvvg~h~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~d~~la~~l~~~l~~~g~~~~~~~~~~~~~DHg~  115 (256)
T cd07951          36 AARPDTIVVVSPHAPVFRDAFAISTGGTLRGDFSRFGAPEVSFGVDLDLELVEEIAGEADKEGLPVGALGERIPELDHGT  115 (256)
T ss_pred             HcCCCEEEEECCCcccccceeEeccCCceecchhhcCCCcceEeeeCCHHHHHHHHHHhhhcCCCcccccCCCCCCCchh
Confidence            3689999999999988788889988899999999         7999999999998753   22  22233447899999


Q ss_pred             ccchHHHHHHhcCCCeeEEEEEeCCCCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCCCCCCCccCCccccchhHHH
Q 022859          132 EMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSI  209 (291)
Q Consensus       132 EvqlPfL~~~~~~~~~~IVPi~vg~~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~  209 (291)
                      |||||||++.+.  +++||||.++..+.+++.+||++|+++++  +++++||+||||||+....  .|++     ..+.+
T Consensus       116 ~vpl~~l~~~~~--~~pvVpi~~~~~~~~~~~~lG~aL~~~~~~~~~~vlii~SgdlsH~l~~~--~p~~-----~~~~a  186 (256)
T cd07951         116 LVPLYFLRKAGS--DGKLVRIGLSGLSPEELYAFGRALAAAAEELGRRVALIASGDLSHRLTED--APGG-----YDPRG  186 (256)
T ss_pred             hhhHHhhcccCC--cCCeEEEecCCCCHHHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCC--CCCC-----CCcch
Confidence            999999998753  79999999999999999999999999884  5689999999999985321  1111     12456


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHhc--CCCcCChhHHHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEE
Q 022859          210 EALDKMGMDIIETGDPDAFKKYLLEY--DNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAA  287 (291)
Q Consensus       210 ~~~D~~~i~~i~~~d~~~~~~~~~~~--~~~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~  287 (291)
                      +++|+++++.|.++|.++|+++..+.  .++.||..|+.+++++++..+.  +++++.|..+        +.|||+.+.+
T Consensus       187 ~~~D~~~~~~l~~~D~~~L~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~--~~~~l~y~~~--------~g~g~~v~~~  256 (256)
T cd07951         187 PEFDAAIAEALAKGDVDALLALDPELAEEAGECGRRSWQVLAGALDGASV--KGEVLSYEGP--------FGVGYLVAVW  256 (256)
T ss_pred             HHHHHHHHHHHHcCCHHHHHhcCHHHHHHHHhcChHHHHHHHHhccCCCc--cceeeeccCC--------cccCeEEEeC
Confidence            89999999999999999999875533  5688999999999999988763  7999999997        7899998753

This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome.

>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases

Probab=100.00  E-value=7.6e-32  Score=243.12  Aligned_cols=220  Identities=17%  Similarity=0.182  Sum_probs=172.3

Q ss_pred             eeeecCCchhc---hH--HHHHHHHHhc--CCCCCCEEEEECCCCCCCCCceeEeCC----CccccCC----CCCCCcHH
Q 022859           42 GVIAPHAGYSY---SG--RAAAYAFGNI--DPTSISRVFLLGPSHHYYTPKCALSTA----TVYKTPI----GDLPLDLE  106 (291)
Q Consensus        42 a~I~PHag~~y---sg--~~aa~ay~~l--~~~~~~~VvIlGp~H~~~~~~~~~~~~----~~~~TPl----G~~~vD~~  106 (291)
                      ++++||-+..+   ..  .-+.+.++..  ...+||+|||+||+|......+++...    +.|.||.    +.+++|.+
T Consensus         2 ~~fi~HG~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~IvvispH~~~~~~~~~i~~~~~~~g~~~~p~~~~~~~~~~d~e   81 (256)
T cd07952           2 IAVIPHGDEIIDPLDEESRKLNEAIKEEGAKNDDPDVLVVITPHGIRLSGHVAVILTEYLEGTLRTNKVLIRSKYPNDRE   81 (256)
T ss_pred             eEEcCCCCccCCCCCcchHHHHHHHHHHHHHhcCCCEEEEECCCcccccCceEEeecCeeeeecccCCCceEEecCCCHH
Confidence            57788866222   21  2223344433  245799999999999988888888766    8999999    99999999


Q ss_pred             HHHHHHhcC-----CceecccccCc-------cccccccchHHHHHHhcCCCeeEEEEEeCCC-CHHHHHHHHHHHHHhh
Q 022859          107 VIEELKATG-----KFELMDICVDE-------AEHSMEMHLPYLAKVFEGHLIKIVPILVGAV-NAENEAMYGRLFAKYV  173 (291)
Q Consensus       107 ~~~~L~~~~-----~~~~~d~~~~~-------~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~-~~~~~~~l~~~L~~~~  173 (291)
                      ++++|.+..     +....+...|.       .||+.-||||||++      .|||+|.++.. +.+++.++|++|++++
T Consensus        82 la~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~lDHG~~VPL~fl~~------~pvV~is~~~~~~~~~~~~lG~aL~~~~  155 (256)
T cd07952          82 LANEIYKSARADGIPVLGINFATSSGDNSDFPLDWGELIPLSFLKK------RPIVLITPPRLLPREELVEFGRALGKAL  155 (256)
T ss_pred             HHHHHHHHHHHcCCceeeccchhhccccCCCCCCccccccHhhCCC------CCeEEEccccCCCHHHHHHHHHHHHHHH
Confidence            999997753     22222322343       45555599999875      27999999887 9999999999999987


Q ss_pred             C--CCCeEEEEeCCCCCCCC---CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHH--HhcCCCcCChhHHH
Q 022859          174 D--DPSNFFSVSSDFCHWGS---RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYL--LEYDNTICGRHPIS  246 (291)
Q Consensus       174 ~--~~~~liv~SsDlsH~g~---~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~--~~~~~~~CG~~~i~  246 (291)
                      +  +++++||+||||||+.+   ++++.          +.+++||+++++.|+++|.++++++.  ...+++.||..|+.
T Consensus       156 ~~~~~~vliIaSGdlSH~l~~~~p~~~~----------~~a~~fD~~~~~~l~~~d~~~l~~~~~~~~~~a~~cg~~pl~  225 (256)
T cd07952         156 EGYEKRVAVIISADHAHTHDPDGPYGYS----------PDAAEYDAAIVEAIENNDFEALLELDDELIEKAKPDSYWQLL  225 (256)
T ss_pred             HhcCCcEEEEEecCccccCCCCCCCCCC----------cchHHHHHHHHHHHHcCCHHHHHhCCHHHHHHhhhcCHHHHH
Confidence            5  46899999999999975   23322          45789999999999999999999873  34467889999999


Q ss_pred             HHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEE
Q 022859          247 VFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAA  287 (291)
Q Consensus       247 ~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~  287 (291)
                      ++|++++..+.  ++++++|+.+        +.|||+.+.|
T Consensus       226 ~~lga~~~~~~--~~~vl~Y~~p--------~~~g~~~a~~  256 (256)
T cd07952         226 ILAGILESSPR--KSKVLYYEVP--------TYFGMMVALF  256 (256)
T ss_pred             HHHhhccCCCc--cceEEEccCC--------CceeEEEEeC
Confidence            99999998873  7999999998        8899998764

This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.

>PRK03881 hypothetical protein; Provisional

Probab=99.98  E-value=1.8e-31  Score=259.07  Aligned_cols=210  Identities=20%  Similarity=0.305  Sum_probs=172.4

Q ss_pred             HHHHHhcC----CCCCCEEEEECCCCCCCCCceeEeCCCccccCCC---------CCCCcHHHHHHHHhcC---Cc--ee
Q 022859           58 AYAFGNID----PTSISRVFLLGPSHHYYTPKCALSTATVYKTPIG---------DLPLDLEVIEELKATG---KF--EL  119 (291)
Q Consensus        58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~TPlG---------~~~vD~~~~~~L~~~~---~~--~~  119 (291)
                      ..+|+.+.    ..+||+|||+||+|......+++.....|.||||         ++++|.+++++|.+..   ++  ..
T Consensus        31 ~~a~~~~~~~l~~~~Pd~IVVispH~~~~~~~~~i~~~~~~~gdf~~fg~~~v~~~~~~d~eLA~~i~~~~~~~g~~~~~  110 (467)
T PRK03881         31 IDALRELARRIAEKKPDTIIIISPHGPVFRDAVAISDGPRLKGDLGRFGAPEVSFSFKNDLELVEEIAEEAKKEGIPVVE  110 (467)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCcccccCcEEEecCcceeeehhccCCCCccccCCCCHHHHHHHHHHHHHcCCceEe
Confidence            45555553    3489999999996665667788888889999998         8999999999997654   32  22


Q ss_pred             cc-------cccCccccccccchHHHHHHhcCCCeeEEEEEeCCCCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCC
Q 022859          120 MD-------ICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWG  190 (291)
Q Consensus       120 ~d-------~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g  190 (291)
                      .+       ...+..|||+|||||||++.++  +++||||.++..+.+++.++|++|+++++  +++++||+|||||||.
T Consensus       111 ~~~~~~~~~~~~~~lDHg~~VpL~fl~~~~~--d~pVVpis~~~~~~~~~~~lG~aL~~~~~~~~~rvliIaSGdLSH~l  188 (467)
T PRK03881        111 VDEELARKYEVSGELDHGTMVPLYFLRKAGS--DFKLVHISYGGLSPEELYKFGMAIREAAEELGRKVVLIASGDLSHRL  188 (467)
T ss_pred             ecccccccccCCCCCCceEEeehhhhccccC--CCCEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeCcccccC
Confidence            22       4567899999999999998753  79999999999999999999999999885  5689999999999997


Q ss_pred             CC---CCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHh--cCCCcCChhHHHHHHHHHhhCCCCCceEEEe
Q 022859          191 SR---FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLE--YDNTICGRHPISVFLHMLGNCSTKIKIKFLR  265 (291)
Q Consensus       191 ~~---~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~--~~~~~CG~~~i~~~l~~~~~~~~~~~~~ll~  265 (291)
                      ..   +|+.          +.++++|+++++.|.++|.++|+++..+  .+.+.||..|+.+++++++..+.  ++++++
T Consensus       189 ~~~~p~g~~----------~~a~~fD~~ii~~i~~gD~~~L~~~~~~~~~~a~~cG~~p~~~~lga~~~~~~--~~~~l~  256 (467)
T PRK03881        189 TPDGPYGYA----------PEGPEFDRAIVELLSKGDVEGLLSIDEELIEEAGECGLRSVLIMLGALDGYSV--KSEVLS  256 (467)
T ss_pred             CCCCCCCCC----------cchHHHHHHHHHHHHcCCHHHHHhcCHHHHHhhhhcCHHHHHHHHHhccccCC--CceEEE
Confidence            32   3332          3457999999999999999999887543  35578999999999999987763  789999


Q ss_pred             ecCCCCCCCCCCCeeEeeEEEEEe
Q 022859          266 YEQSSQCKTKRDSSVSYASAAAKV  289 (291)
Q Consensus       266 Y~~S~~~~~~~~~~VgYas~~~~~  289 (291)
                      |+++        ++|||+++.|..
T Consensus       257 Y~~~--------~gVGYa~~~f~~  272 (467)
T PRK03881        257 YEGP--------FGVGYGVARFEP  272 (467)
T ss_pred             EeCC--------cccceEEEEEec
Confidence            9964        579999999964

>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=99.97  E-value=1.8e-31  Score=242.33  Aligned_cols=227  Identities=18%  Similarity=0.214  Sum_probs=164.4

Q ss_pred             eeeecCCch-----hchHHHHHHHHHhcC----CCCCCEEEEECCCCCCC-----CCceeEeCCCccccCCCC-------
Q 022859           42 GVIAPHAGY-----SYSGRAAAYAFGNID----PTSISRVFLLGPSHHYY-----TPKCALSTATVYKTPIGD-------  100 (291)
Q Consensus        42 a~I~PHag~-----~ysg~~aa~ay~~l~----~~~~~~VvIlGp~H~~~-----~~~~~~~~~~~~~TPlG~-------  100 (291)
                      ++++||.-.     .-..+....+++.+.    ..+||+|||+||+|+..     ..++++ ..++|.||+|+       
T Consensus         7 ~~~~pH~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~iViis~~h~~~~~~~~~~~~~i-~~~~~~~p~gd~g~~~~~   85 (269)
T PRK13358          7 AFATSHVLMSSKGGEEQAKRVVEGMREIGRRLRELRPDVLVVIGSDHLFNFNTGCQPPFLV-GTGDSDTPYGDMDIPREL   85 (269)
T ss_pred             ehcccccccCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCCeEE-EecCCCCCccccCCCccc
Confidence            567777311     122333455666654    34899999999999844     445676 46789999998       


Q ss_pred             CCCcHHHHHHHHhcC---CceecccccCccccccccchHHHHHHhcCCCeeEEEEEeC-----CCCHHHHHHHHHHHHHh
Q 022859          101 LPLDLEVIEELKATG---KFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVG-----AVNAENEAMYGRLFAKY  172 (291)
Q Consensus       101 ~~vD~~~~~~L~~~~---~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg-----~~~~~~~~~l~~~L~~~  172 (291)
                      ++.|.+++++|.+..   ++.......|..|||  +++||++ ++|+.++|||||.++     .++.+++.++|++|+++
T Consensus        86 ~~g~~~LA~~l~~~~~~~~~~~a~~~~~~~DHg--~~vPl~~-l~~~~~~pvVpisv~~~~~p~~~~~~~~~lG~al~~~  162 (269)
T PRK13358         86 VPGHRAFAQAIALHRAADGFDLAQAEELRPDHG--VMIPLLF-MDPGRRIPVVPVYVNINTDPFPSAKRCAALGEVIRQA  162 (269)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCeeeccccCCCcc--hhhhHHH-hcCCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHH
Confidence            777777799997643   222212234889999  5777766 666558999999998     56679999999999998


Q ss_pred             hC-----CCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCChhHHHH
Q 022859          173 VD-----DPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISV  247 (291)
Q Consensus       173 ~~-----~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~i~~  247 (291)
                      ++     ++|++||+||||||+.+..++.          ..++++|+++++.++++|.++|.++..+.-.+.||.+++.+
T Consensus       163 ~~~~~~~~~rvlvIaSGdlSH~l~~~~~~----------~~~~~fD~~~~~~i~~~D~~~l~~~~~~~~~~~~G~g~~~~  232 (269)
T PRK13358        163 VEKDRPADERVAVIGTGGLSHWLGVPEHG----------EVNEDFDRMVMDALVSGDLEALVALGNEEILEQGGNGGLEI  232 (269)
T ss_pred             HHhhCCCCCcEEEEecCCccCCCCCcccc----------ccHHHHHHHHHHHHHcCCHHHHHhcCHHHHHHhcCcccHHH
Confidence            74     4789999999999996532222          34589999999999999999997754433336788877743


Q ss_pred             H--HHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEEEe
Q 022859          248 F--LHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKV  289 (291)
Q Consensus       248 ~--l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~~  289 (291)
                      .  +.++..++. .++++|+|++      +++.+|||++++|.+
T Consensus       233 ~~~~~~~ga~~g-~~~~~l~Y~~------~~~~vvG~~~~~~~~  269 (269)
T PRK13358        233 RNWIMAAAAVPG-RRGEKIYYEA------MPQWVTGMGGVQFHV  269 (269)
T ss_pred             HHHHHHHhhcCC-CccceEEEEe------cHHHhhhheEEEEeC
Confidence            3  222233333 3799999999      567999999999863

>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate

Probab=99.97  E-value=1.2e-29  Score=233.57  Aligned_cols=190  Identities=16%  Similarity=0.171  Sum_probs=153.7

Q ss_pred             CCCCCCEEEEECCCCCCC-CC----cee----EeCCCccccCCCCCCCcHHHHHHHHhcCCceecccccC----cccccc
Q 022859           65 DPTSISRVFLLGPSHHYY-TP----KCA----LSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVD----EAEHSM  131 (291)
Q Consensus        65 ~~~~~~~VvIlGp~H~~~-~~----~~~----~~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~----~~EHsl  131 (291)
                      .+.+||+||||||+|+.. +.    .++    ....++|+||.|.+++|.+++++|.+......++ ..+    ..|||+
T Consensus        39 ~~~~PD~iVIigphH~~~f~~~~~p~f~i~~a~~~~gd~~~p~g~~~~d~eLA~~L~~~~~~~g~d-~a~~~~~~lDHg~  117 (310)
T cd07365          39 AAFDPELVVLFAPDHYNGFFYDLMPPFCIGTAATAVGDYGTLAGPLNVPRDLAEDLARHVLDSGID-VAISHRMQVDHGF  117 (310)
T ss_pred             HHcCCCEEEEEcCCcccccccccCCceEeeccCccccccccCCCCCCCCHHHHHHHHHhhhhcCCC-hhhccCCCCCcch
Confidence            356799999999999985 44    233    3346899999999999999999998765322222 233    389999


Q ss_pred             ccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCC--------------
Q 022859          132 EMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWG--------------  190 (291)
Q Consensus       132 EvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g--------------  190 (291)
                      |||||||++.++  +++||||.++.     .+.++|.+||++|+++++  ++|++||+|||||||.              
T Consensus       118 ~VPL~fL~~~~~--~~pVVPI~vn~~~~P~~s~~r~~~lG~al~~ai~~~d~rV~VIaSGdLSH~~~~~~~~~~d~~~~~  195 (310)
T cd07365         118 TQPLEELFGGLD--RYPVIPIFVNSVAPPLAPMRRARALGEAVGRFLAKLDKRVLFLGSGGLSHDPPVPQLATAPPEVAE  195 (310)
T ss_pred             HhhHHHHhCCCC--CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcccCCCchhhhhcccHHHHH
Confidence            999999998763  68999999999     899999999999999886  5689999999999993              


Q ss_pred             -----------------------------CCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCC
Q 022859          191 -----------------------------SRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNT  238 (291)
Q Consensus       191 -----------------------------~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~  238 (291)
                                                   .++||.|          .+++||+++++.+.++|++++.++..+.   +..
T Consensus       196 ~l~~~d~~~~~~~~~~~~~i~~~~~~~~~gp~~~~p----------~~~~fD~~~l~~~~~gd~~~l~~~~~~~~~~~aG  265 (310)
T cd07365         196 RLIAGRNPTPEARAARQQRVIAAAKAFAAGDSTLMP----------LNPEWDRAFLDLLASGDLAALDAMTNDEIAAQAG  265 (310)
T ss_pred             HHHhcccchHHHHHHHHhhhhhhhhhcccCcccCCC----------CCHHHHHHHHHHHHcCCHHHHHcCCHHHHHHHhc
Confidence                                         2344443          3479999999999999999999886653   567


Q ss_pred             cCCh--hHHHHHHHHHhhCCCCCceEEEeecC
Q 022859          239 ICGR--HPISVFLHMLGNCSTKIKIKFLRYEQ  268 (291)
Q Consensus       239 ~CG~--~~i~~~l~~~~~~~~~~~~~ll~Y~~  268 (291)
                      .||.  ....++++++...+. .+.+.+.|+.
T Consensus       266 ~~g~Ei~~w~~~~gal~~~~~-~~~~~~~y~p  296 (310)
T cd07365         266 NSAHEVRTWVAAFAALAAAGR-YRAESRYYRP  296 (310)
T ss_pred             cccHHHHHHHHHHHHhhhccC-ceeeeEEEeE
Confidence            8999  888888888876654 4788999885

2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca

>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes

Probab=99.95  E-value=1.4e-27  Score=217.14  Aligned_cols=207  Identities=20%  Similarity=0.213  Sum_probs=154.8

Q ss_pred             HHHHHhcC----CCCCCEEEEECCCCCCCCC-----ceeEeC--------CCccccCCCCCCCcHHHHHHHHhcC---Cc
Q 022859           58 AYAFGNID----PTSISRVFLLGPSHHYYTP-----KCALST--------ATVYKTPIGDLPLDLEVIEELKATG---KF  117 (291)
Q Consensus        58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~-----~~~~~~--------~~~~~TPlG~~~vD~~~~~~L~~~~---~~  117 (291)
                      ..+|+.+.    ..+||+||||||+|+..+.     .+++..        ...|.||.+++++|.+++++|.+..   ++
T Consensus        30 ~~~l~~~~~~l~~~~Pd~ivvis~~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~elA~~i~~~~~~~g~  109 (271)
T cd07359          30 FAAFARIRDRLEAARPDVVVVVGNDHFTNFFLDNMPAFAIGIADSYEGPDEGWLGIPRAPVPGDADLARHLLAGLVEDGF  109 (271)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCcHHhhcCcccCCceEEeecccccCCccccccCcCCCCCCCHHHHHHHHHHHHHcCC
Confidence            45555553    3589999999999988753     233322        1116999999999999999998753   33


Q ss_pred             eecccccCccccccccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCC
Q 022859          118 ELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCH  188 (291)
Q Consensus       118 ~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH  188 (291)
                      ..........|||++|||+||+...   +++||||.|+.     .+.+++.+||++|+++++    +++++||+||||||
T Consensus       110 ~~a~~~~~~lDHg~~vpL~~l~~~~---~~pvVpvsv~~~~~~~~~~~~~~~lG~aL~~~i~~~~~d~rV~iIaSGdlSH  186 (271)
T cd07359         110 DVAFSYELRLDHGITVPLHFLDPDN---DVPVVPVLVNCVTPPLPSLRRCYALGRALRRAIESFPGDLRVAVLGTGGLSH  186 (271)
T ss_pred             CeeccCCCCCCcchhhHHHHhcCCC---CCCEEEEEecccCCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccC
Confidence            2211122448999999999988654   79999999977     367899999999999875    56899999999999


Q ss_pred             CCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCC--hhHHHHHHHHHhhCCCCCceEE
Q 022859          189 WGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICG--RHPISVFLHMLGNCSTKIKIKF  263 (291)
Q Consensus       189 ~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG--~~~i~~~l~~~~~~~~~~~~~l  263 (291)
                      +.+.   .+++       ..+++||+++++.|.++|.++|++...+.   +...||  ..+..++++++...    ++++
T Consensus       187 ~l~~---~~~g-------~~~~~fD~~~~~~l~~~d~~~l~~~~~~~~~~~ag~~~~e~~~~~~~~GA~~~~----~~~~  252 (271)
T cd07359         187 WPGG---PRHG-------EINEEFDREFLDLLERGDLEALLKATTEETLEEAGNGGHEILNWIAAAGALGEA----PGEV  252 (271)
T ss_pred             CCCC---cccc-------ccCHHHHHHHHHHHHhCCHHHHHhcCHHHHHHHcCCCcHHHHHHHHHHHhhccC----ccce
Confidence            9642   1111       23579999999999999999987664332   446799  66777777776543    4789


Q ss_pred             EeecCCCCCCCCCCCeeEeeEEEE
Q 022859          264 LRYEQSSQCKTKRDSSVSYASAAA  287 (291)
Q Consensus       264 l~Y~~S~~~~~~~~~~VgYas~~~  287 (291)
                      ++|+...      ++.|||+.+.+
T Consensus       253 ~~ye~~~------~~~~G~~~~~~  270 (271)
T cd07359         253 LYYEPVP------EWNTGMGFAVL  270 (271)
T ss_pred             eEEEEch------hhhhhheeeee
Confidence            9999963      27899998765

This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres

>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol

Probab=99.94  E-value=1.4e-25  Score=205.46  Aligned_cols=213  Identities=9%  Similarity=0.069  Sum_probs=159.4

Q ss_pred             HHHHhcC----CCCCCEEEEECCCCCCCCCceeEeCCCccccCCC------------CCCCcHHHHHHHHhcC---Ccee
Q 022859           59 YAFGNID----PTSISRVFLLGPSHHYYTPKCALSTATVYKTPIG------------DLPLDLEVIEELKATG---KFEL  119 (291)
Q Consensus        59 ~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~TPlG------------~~~vD~~~~~~L~~~~---~~~~  119 (291)
                      .+|+.+.    +.+||+|||++|+|..... ..+.....++..+.            +++.|.+++++|.+..   ++..
T Consensus        37 ~a~~~~~~~i~~~~Pd~IVViSpHw~~~~~-~~~~~~p~~~G~~~~~~~p~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~~  115 (294)
T cd07372          37 WAYERARESIEALKPDVLLVHSPHWITSVG-HHFLGVPELSGRSVDPIFPNLFRYDFSMNVDVELAEACCEEGRKAGLVT  115 (294)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCCcccccC-eeeecCCcccccccccccccceeeccCCCCCHHHHHHHHHHHHHCCCCe
Confidence            5565553    5689999999997665543 32232222221111            2578999999997643   3322


Q ss_pred             --cccccCccccccccchHHHHHHhcCCCeeEEEEEeCCCC--------HHHHHHHHHHHHHhhC--CCCeEEEEeCCCC
Q 022859          120 --MDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVN--------AENEAMYGRLFAKYVD--DPSNFFSVSSDFC  187 (291)
Q Consensus       120 --~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~~--------~~~~~~l~~~L~~~~~--~~~~liv~SsDls  187 (291)
                        .+......||+.-|+|-||+   |+.++|||+|.++.++        .+++++||++|+++++  ++|++||+|+|||
T Consensus       116 ~~~~~~~~~LDHGt~vPL~fl~---p~~~~pvV~is~~~l~~~~~~~~~~~~~~~lG~ai~~al~~~~~RV~vIaSG~LS  192 (294)
T cd07372         116 KMMRNPRFRVDYGTITTLHMIR---PQWDIPVVGISANNTPYYLNTKEGLGEMDVLGKATREAIRKTGRRAVLLASNTLS  192 (294)
T ss_pred             eeccCCCCCCCchHHHHHHHhC---CCCCCcEEEEecCcccccccccCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCccc
Confidence              23445679999999999975   4358999999987644        6889999999999886  5789999999999


Q ss_pred             CCC----C--CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc--CC-CcCChhHHHHHHHHHhhCCCC
Q 022859          188 HWG----S--RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY--DN-TICGRHPISVFLHMLGNCSTK  258 (291)
Q Consensus       188 H~g----~--~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~--~~-~~CG~~~i~~~l~~~~~~~~~  258 (291)
                      |+.    +  ++|+.++.+   + ...++++|+++++.+.++|.++|+++..+.  ++ ..||..++..++.++...+  
T Consensus       193 H~l~~~~~~~p~~~~~~~~---~-~~~~~~fD~~vl~~l~~gd~~~l~~~~~~~~~~A~ge~g~~~~~~~~ga~~~~~--  266 (294)
T cd07372         193 HWHFHEEPAPPEDMSKEHP---E-TYAGYQWDMRMIELMRQGRMKEVFRLLPQFIEEAFAEVKSGAFTWMHAAMQYPE--  266 (294)
T ss_pred             ccCccCCCCCccccccccc---c-chhHHHHHHHHHHHHHcCCHHHHHhcCHHHHHHhccccchHHHHHHHHhhcCCC--
Confidence            994    2  344443211   0 016789999999999999999999987766  44 6899999999999997766  


Q ss_pred             CceEEEeecCCCCCCCCCCCeeEeeEEEEEe
Q 022859          259 IKIKFLRYEQSSQCKTKRDSSVSYASAAAKV  289 (291)
Q Consensus       259 ~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~~  289 (291)
                      .++++++|+.+        +.|||+.+.|.+
T Consensus       267 ~~~~vlsYegp--------fGvGy~va~~~~  289 (294)
T cd07372         267 LAAELHGYGTV--------IGTGNAVMEWNL  289 (294)
T ss_pred             cCceEeeccCC--------cccCcEEEEEEE
Confidence            47999999998        899999998854

2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin

>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate

Probab=99.94  E-value=2e-25  Score=203.80  Aligned_cols=219  Identities=12%  Similarity=0.111  Sum_probs=153.8

Q ss_pred             HHHHHhcC----CCCCCEEEEECCCCCCCCCceeEeCCCcccc-------CC------CCCCCcHHHHHHHHhcCCceec
Q 022859           58 AYAFGNID----PTSISRVFLLGPSHHYYTPKCALSTATVYKT-------PI------GDLPLDLEVIEELKATGKFELM  120 (291)
Q Consensus        58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~T-------Pl------G~~~vD~~~~~~L~~~~~~~~~  120 (291)
                      ..+++.+.    ..+||+|||++|+|... ..+.+......++       |.      -+.+.|.+++++|.+...-..+
T Consensus        31 ~~~~~~~~~~l~~~~Pd~ivviS~H~~~~-~~~~i~~~~~~~g~~~~~g~p~~~~~i~~~~~gd~ela~~i~~~~~~~g~  109 (280)
T cd07370          31 IDGLKEIGRRARELGVDTIVVFDTHWLVN-AGYHINANARFSGLFTSNELPHFIADMPYDYAGDPELAHLIAEEATEHGV  109 (280)
T ss_pred             HHHHHHHHHHhhHcCCCEEEEECCCcccc-cceeEeccCCCCceecCCCCCchhcCCCCCCCCCHHHHHHHHHHHHHCCC
Confidence            34555553    34899999999854343 2233332222222       21      1488999999999875532223


Q ss_pred             ccccCccccccccchHHH---HHHhcCCCeeEEEEEeCC-CCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCCC---
Q 022859          121 DICVDEAEHSMEMHLPYL---AKVFEGHLIKIVPILVGA-VNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWGS---  191 (291)
Q Consensus       121 d~~~~~~EHslEvqlPfL---~~~~~~~~~~IVPi~vg~-~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g~---  191 (291)
                      +...| .||++|++++|+   ++++|+.+++||||.++. .+.+++.+||++|+++++  +++++||+||||||+..   
T Consensus       110 ~~~~~-~~~~~~lDhg~~vPL~~l~p~~~~pvV~is~~~~~~~~~~~~lG~al~~~~~~~~~~v~iIaSG~lsH~l~~~~  188 (280)
T cd07370         110 KTLAH-EDPSLPLEYGTLVPMRFMNEDDHFKVVSVAVWCTHDIEESRRLGEAIRRAIAASDRRVALLASGSLSHRFWPNR  188 (280)
T ss_pred             Ceeee-cCCCCCCCeeHhhHHHHhCCCCCceEEEEeecCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeccccccCccCC
Confidence            43345 789999999997   888875589999999954 789999999999999875  56899999999999853   


Q ss_pred             CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCChhHHHHHHHHHhhCCC---CCceEEEe-ec
Q 022859          192 RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCST---KIKIKFLR-YE  267 (291)
Q Consensus       192 ~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~i~~~l~~~~~~~~---~~~~~ll~-Y~  267 (291)
                      ++++...  +.......+++||+++++.|+++|.++++++..+.....||..++..+|.++..+|.   ..+.++++ |+
T Consensus       189 ~~~~~~~--~~~~~~p~~~~fD~~~~~~i~~gD~~~L~~~~~~~~~~~~g~~g~~~~l~l~~alG~~~~~~~~~~~~~ye  266 (280)
T cd07370         189 ELEAHED--PFTISSPFNRQVDLRVLELWKEGRHAEFLDMLPDYARRCAGEGGMHDTAMLFGALGWDDYDGKAEVVTEYF  266 (280)
T ss_pred             Ccccccc--ccccCChhHHHHHHHHHHHHHcCCHHHHHHhCHHHHHHhCccCChHHHHHHHhhhCccccccceeEecccC
Confidence            2233200  000113578999999999999999999998866554466777666666666655543   23467766 98


Q ss_pred             CCCCCCCCCCCeeEeeEEEEE
Q 022859          268 QSSQCKTKRDSSVSYASAAAK  288 (291)
Q Consensus       268 ~S~~~~~~~~~~VgYas~~~~  288 (291)
                      ++        ++|||+.+.|.
T Consensus       267 ~~--------~g~g~~v~~~~  279 (280)
T cd07370         267 PS--------SGTGQVNVWFP  279 (280)
T ss_pred             CC--------CccceEEEEec
Confidence            87        88999998773

3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.

>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional

Probab=99.94  E-value=1.2e-25  Score=207.30  Aligned_cols=189  Identities=15%  Similarity=0.192  Sum_probs=148.1

Q ss_pred             CCCCCEEEEECCCCCCC-CC----ceeE----eCCCccccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchH
Q 022859           66 PTSISRVFLLGPSHHYY-TP----KCAL----STATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLP  136 (291)
Q Consensus        66 ~~~~~~VvIlGp~H~~~-~~----~~~~----~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlP  136 (291)
                      +.+||+||||||+|+.. +.    .+++    ...++|.||.|.+++|.+++++|.+......+| ..+  .|++|++++
T Consensus        40 ~~~PD~iVIigpdH~~~f~~d~~P~f~i~~~~~~~gd~~~~~g~~~~d~eLA~~i~~~~~~~g~d-~a~--~~~~~lDHG  116 (313)
T PRK13370         40 AFDPELVVLFAPDHYNGFFYDVMPPFCIGVSATAVGDYGTAAGPLPVPSDLAEALAEAVLDSGID-VAV--SYRMQVDHG  116 (313)
T ss_pred             HhCCCEEEEEcCCcccccccccCCceEeccCCCcCcccccCCCCCCCCHHHHHHHHHHhHhcCCC-hhh--cCCcCCCEe
Confidence            46799999999999988 44    2333    335899999999999999999998765333333 233  489999999


Q ss_pred             HHH---HHhcC-CCeeEEEEEeC-----CCCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCCC--------------
Q 022859          137 YLA---KVFEG-HLIKIVPILVG-----AVNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWGS--------------  191 (291)
Q Consensus       137 fL~---~~~~~-~~~~IVPi~vg-----~~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g~--------------  191 (291)
                      |++   +++++ .+++||||.++     ..+.+++.+||++|+++++  ++|++||+|||||||.+              
T Consensus       117 ~~vPL~~l~~~~~~~pVVpI~vn~~~~p~~s~~r~~~lG~aI~~ai~~~d~rVlvIaSGdLSH~~~~~~~~~~d~~~~er  196 (313)
T PRK13370        117 FAQPLEFLLGGLDAYPVIPVFINSVAAPLPPFRRVRLLGEAVGRFLATLDKRVLFLGSGGLSHDPPVPELATADPEVRER  196 (313)
T ss_pred             HHHHHHHhcCCCCCceEEEEeecCCCCCcCCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcCCCchHhHhhccHHHHHH
Confidence            988   77763 24899999999     6788999999999999886  67899999999999832              


Q ss_pred             -----------------------------CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCc
Q 022859          192 -----------------------------RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTI  239 (291)
Q Consensus       192 -----------------------------~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~  239 (291)
                                                   ++||.          ..+++||+++++.+.++|.+++.++..+.   ....
T Consensus       197 l~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~----------p~~~~~D~~~l~~l~~gd~~~l~~~~~~~~~~~aG~  266 (313)
T PRK13370        197 LIAGRNPTPEERAARQQRVIAAARIFAAGQSALH----------PLNPEWDRAFLDLLESGDLAALDAWTNEEITREAGK  266 (313)
T ss_pred             HHccCCccHHHHHHHHhhHHhhhhhcccCcccCC----------CCCHHHHHHHHHHHHcCCHHHHhcCCHHHHHHHhcc
Confidence                                         22333          34579999999999999999999876544   3678


Q ss_pred             CC--hhHHHHHHHHHhhCCCCCceEEEeecC
Q 022859          240 CG--RHPISVFLHMLGNCSTKIKIKFLRYEQ  268 (291)
Q Consensus       240 CG--~~~i~~~l~~~~~~~~~~~~~ll~Y~~  268 (291)
                      ||  ..+..++++++...+. .+.+...|+-
T Consensus       267 ~g~E~r~w~~~~gal~~~~~-~~~~~~~y~p  296 (313)
T PRK13370        267 SAHEIRTWVAAFAALSAFGP-YRAEGRYYRP  296 (313)
T ss_pred             chHHHHHHHHHHHHHhhcCC-ceeeeeeeeE
Confidence            99  8888888888855443 3677888874

>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate

Probab=99.92  E-value=9.6e-24  Score=191.85  Aligned_cols=214  Identities=16%  Similarity=0.130  Sum_probs=157.8

Q ss_pred             HHHHhcC----CCCCCEEEEECCCCCCCCCce--eEeC----CCc-------cccCCCCCCCcHHHHHHHHhcC---Cce
Q 022859           59 YAFGNID----PTSISRVFLLGPSHHYYTPKC--ALST----ATV-------YKTPIGDLPLDLEVIEELKATG---KFE  118 (291)
Q Consensus        59 ~ay~~l~----~~~~~~VvIlGp~H~~~~~~~--~~~~----~~~-------~~TPlG~~~vD~~~~~~L~~~~---~~~  118 (291)
                      .+|+.+.    ..+||+|||++|+|.......  ..+.    .+.       ++-++ +++.|.+++++|.+..   ++.
T Consensus        30 ~a~~~l~~~l~~~~Pd~IvvvS~Hw~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~y-~~~g~~~LA~~i~~~l~~~Gi~  108 (272)
T cd07362          30 KGMKEIRKRIEELKPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDLISDVPY-DYPGDPELGRLLVEEGQEAGLR  108 (272)
T ss_pred             HHHHHHHHHhhHcCCCEEEEECCCcccccceeeeccCccccccccCcCCchhhcccc-CCCCCHHHHHHHHHHHHHcCCc
Confidence            5666653    358999999999776654111  1111    111       11122 6889999999997753   333


Q ss_pred             e--cccccCccccccccchHHHHHHhcCCCeeEEEEEeCC--CCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCCCC
Q 022859          119 L--MDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA--VNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWGSR  192 (291)
Q Consensus       119 ~--~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~--~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g~~  192 (291)
                      .  ..+.....||+.-|+|-||.   |+.+++||||.++.  .+.+++.+||++|+++++  +++++||+|+|+||....
T Consensus       109 ~~~~~~~~~~lDHG~~vPL~~l~---p~~~iPVV~vs~~~~~~~~~~~~~lG~ai~~al~~~~~rv~ii~SG~lsH~l~~  185 (272)
T cd07362         109 VKAVNDPTYIWDYGTVVPLRYLN---PNKDIPVVSISACWTAASLEESYTWGEVIGKALLESDKRVVFLASGSLSHNLVR  185 (272)
T ss_pred             eeeccCCCCCCCcchHHHHHHhC---CCCCCcEEEEeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEEEeCcccccCCC
Confidence            2  12334679999999999865   44589999999986  789999999988888776  589999999999999853


Q ss_pred             CCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc--CCC-cCChhHHHHHHHHHhhCCCCCceEEEeecCC
Q 022859          193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY--DNT-ICGRHPISVFLHMLGNCSTKIKIKFLRYEQS  269 (291)
Q Consensus       193 ~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~--~~~-~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~S  269 (291)
                      .+..+.+. ..--...+++||+++++.++++|.++++++..+.  +.. .||..++.+|+.+++..+  .+.++++|+++
T Consensus       186 ~~~~~~g~-~~~~~~~~~~fD~~i~~~l~~gd~~~l~~~~~~~~~~A~~e~g~~~~~~~~g~~~g~~--~~~~v~sYe~~  262 (272)
T cd07362         186 GPEAEEGM-NHYPSLAEQQMDRRFIQLLREGQFQEACNMLPQYARAAGVESGGRHLTVMLGVMQGWG--KVAELHGYGPS  262 (272)
T ss_pred             CCCCcccc-cCCCChhHHHHHHHHHHHHHcCCHHHHHHhCHHHHHHhcCCcccHHHHHHHHHhcCCc--ccceeccCCCC
Confidence            32211010 0000257889999999999999999999987765  445 999999999999998765  47899999998


Q ss_pred             CCCCCCCCCeeEeeEEEE
Q 022859          270 SQCKTKRDSSVSYASAAA  287 (291)
Q Consensus       270 ~~~~~~~~~~VgYas~~~  287 (291)
                              +.|||+.+.|
T Consensus       263 --------~G~G~~va~~  272 (272)
T cd07362         263 --------SGTGNAVMTF  272 (272)
T ss_pred             --------CCcCeeEEEC
Confidence                    8899998765

This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame

>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=99.91  E-value=6.5e-23  Score=190.29  Aligned_cols=226  Identities=15%  Similarity=0.206  Sum_probs=164.7

Q ss_pred             cceeeecCCchhchHHHHHHHHHhc----CCCCCCEEEEECCCCCCCC-----CceeEeCCCccccC-------------
Q 022859           40 VRGVIAPHAGYSYSGRAAAYAFGNI----DPTSISRVFLLGPSHHYYT-----PKCALSTATVYKTP-------------   97 (291)
Q Consensus        40 ~~a~I~PHag~~ysg~~aa~ay~~l----~~~~~~~VvIlGp~H~~~~-----~~~~~~~~~~~~TP-------------   97 (291)
                      ...-|.|..+=....++. .+|..+    .+.+||+|||+||+|...|     +.+++.....+..+             
T Consensus        57 ~~~~~~~e~~~~~~~~~~-~a~~~~~~~i~~~~PDvlViispdh~~~F~~~~~p~f~I~~~~~~~g~~~~~~~~~~~~~~  135 (335)
T PRK13363         57 LEEQITPEERTERHAACE-AAIERMRDAIEAARIDVAVIVGNDQMELFTTDNNPAFAIYYGETIRNNPASREKLPSLPPG  135 (335)
T ss_pred             hhcccCcccccchHHHHH-HHHHHHHHHHHHhCCCEEEEEcCCchhhcccccCCceEEeecceeccchhhcccccccccc
Confidence            334455555444444443 355444    3578999999999995553     45666655444432             


Q ss_pred             ------------CCCCCCcHHHHHHHHhcC---Cceec--ccc--cCccccccccchHHHHHHhcCCCeeEEEEEeCC--
Q 022859           98 ------------IGDLPLDLEVIEELKATG---KFELM--DIC--VDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA--  156 (291)
Q Consensus        98 ------------lG~~~vD~~~~~~L~~~~---~~~~~--d~~--~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~--  156 (291)
                                  -+.++.|.+++++|.+..   ++...  +..  .+..||++-+++   ++++|+.+++||||.++.  
T Consensus       136 ~~~~~~~~~p~~~~~~~gd~eLA~~I~~~l~~~G~d~~~~~~~~~~~glDHG~~~pl---~~l~p~~dipVVpIsl~~~~  212 (335)
T PRK13363        136 VKAAMPGYMPDAETTYPVVPELARHMIRRLVDDGFDITALDRLPDGEGEGHAFGFVH---RQLMKDNVLPTVPVLVNTFY  212 (335)
T ss_pred             ccccccccCCCCCcCCCCCHHHHHHHHHHHHHcCCCeeeecccccccCCCccchhhH---HHhcCCCCCcEEEEEeccCC
Confidence                        255788999999998754   33221  111  123799954443   345666689999999983  


Q ss_pred             ----CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHH
Q 022859          157 ----VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAF  228 (291)
Q Consensus       157 ----~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~  228 (291)
                          ++.+++.+||++|+++++    +++++||+||||||+..                 +++||+++++.|+++|.+++
T Consensus       213 ~P~~~s~~~~~~lG~aL~~~i~~~~~d~rVlIIaSGdLSH~l~-----------------~~efD~~~l~~l~~~D~~~L  275 (335)
T PRK13363        213 PPNQPTPRRCIALGRSLRRAIRSWPEDARVAVIASGGLSHFVI-----------------DEELDRLIIDAIRAKDFAAL  275 (335)
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCc-----------------HHHHHHHHHHHHHcCCHHHH
Confidence                677899999999999875    37899999999999942                 37999999999999999999


Q ss_pred             HHHHHhc-CCCcCChhHHHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEEEec
Q 022859          229 KKYLLEY-DNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVD  290 (291)
Q Consensus       229 ~~~~~~~-~~~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~~~  290 (291)
                      +++..+. ++..||..+..++++++..++  .++++++|.-.....+.  ..|||+.+.+.-+
T Consensus       276 ~~~~~~~~~aG~~eir~wi~~~GAl~~~~--~~~evlsY~p~~r~e~~--tg~g~~~a~~~~~  334 (335)
T PRK13363        276 ASLDEAILQSGTSEIKNWIAVAGALDDAG--LDMTWVDYVPCYRTEAG--TGTGMGFAAWRTD  334 (335)
T ss_pred             HccCHHHHHhCchhHHHHHHHHHhhccCC--CCceEEEEEeeccCCCC--cceEEEEEEEecC
Confidence            9886544 677899999999999998875  47999999877544444  7899999888654

>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol

Probab=99.91  E-value=7.7e-23  Score=185.95  Aligned_cols=214  Identities=14%  Similarity=0.059  Sum_probs=158.1

Q ss_pred             HHHHHhcC----CCCCCEEEEECCCCCCCCCceeEeCC--C---cccc--CCC----CCCCcHHHHHHHHhcC---Ccee
Q 022859           58 AYAFGNID----PTSISRVFLLGPSHHYYTPKCALSTA--T---VYKT--PIG----DLPLDLEVIEELKATG---KFEL  119 (291)
Q Consensus        58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~~~~--~---~~~T--PlG----~~~vD~~~~~~L~~~~---~~~~  119 (291)
                      ..+|+.+.    +.+||+|||++|+|.......++...  .   ..+|  +||    .++.|++++++|.+..   ++..
T Consensus        28 ~~a~~~lg~~l~~~~Pd~IvviS~Hw~~~~~~~~v~~~~~~g~~~~~~~~df~g~p~~~~g~~eLA~~i~~~~~~~gi~~  107 (271)
T cd07373          28 AAATRQAGKALAASRPDVVLVYSTQWFAVLDQQWLTRPRSEGVHVDENWHEFGELPYDIRSDTALAEACVTACPEHGVHA  107 (271)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCCcccccceeEeeccccccccccChhHhcCcccccCCCHHHHHHHHHHHHHCCCcE
Confidence            45666654    35899999999977764444444320  0   1111  222    4788999999997643   3322


Q ss_pred             --cccccCccccccccchHHHHHHhcCCCeeEEEEEeCC-CCHHHHHHHHHHHHHhhCC--CCeEEEEeCCCCCCCCCCC
Q 022859          120 --MDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-VNAENEAMYGRLFAKYVDD--PSNFFSVSSDFCHWGSRFN  194 (291)
Q Consensus       120 --~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-~~~~~~~~l~~~L~~~~~~--~~~liv~SsDlsH~g~~~g  194 (291)
                        .+......||+.-|+|-||++-.  .++||||+.++. .+.+++.+||++|++++++  +|++||+|+|+||+..+-+
T Consensus       108 ~~~~~~~~~lDHG~~vPL~~l~~~~--~~iPvV~~s~~~~~~~~~~~~lG~al~~~l~~~~~rV~iIgSG~lSH~L~~~~  185 (271)
T cd07373         108 RGVDYDGFPIDTGTITACTLMGIGT--EALPLVVASNNLYHSGEITEKLGAIAADAAKDQNKRVAVVGVGGLSGSLFREE  185 (271)
T ss_pred             EEecCCCCCCcchhHHHHHHHcccC--CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecccccCcCcCC
Confidence              33323478999999999986643  489999999977 7889999999999987775  8999999999999974322


Q ss_pred             Cc---cCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCChhHHHHHHHHHhhCCCCCceEEEeecC
Q 022859          195 YM---HYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQ  268 (291)
Q Consensus       195 ~~---p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~  268 (291)
                      +.   |.+     ..+.+++||+++++.+.++|.++++++..+.   .-+.||..|+.++++++.....  ++++++|+.
T Consensus       186 ~~~~~~~~-----~~p~~~~FD~~~~~~l~~gd~~~ll~~~~~~~~~~~~~~g~~pl~~~~Ga~~~~~~--~~~~l~ye~  258 (271)
T cd07373         186 IDPREDHI-----ANEEDDKWNRRVLKLIEAGDLPALREAMPVYAKAARVDMGFKHLHWILGALGGKFS--GANVLGYGP  258 (271)
T ss_pred             CcCCCCCc-----cCccHHHHHHHHHHHHHcCCHHHHHhcCHHHHHHhcccCChHHHHHHHHhcCCCcc--CcceeeccC
Confidence            11   111     1256789999999999999999999864332   3468999999999999977552  478999998


Q ss_pred             CCCCCCCCCCeeEeeEEEEE
Q 022859          269 SSQCKTKRDSSVSYASAAAK  288 (291)
Q Consensus       269 S~~~~~~~~~~VgYas~~~~  288 (291)
                      +        +.|||+.+.|.
T Consensus       259 ~--------~G~G~~va~f~  270 (271)
T cd07373         259 S--------YGSGAAVVEFR  270 (271)
T ss_pred             C--------cccCeEEEEEe
Confidence            7        88999999885

2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.

>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase

Probab=99.90  E-value=2e-22  Score=184.00  Aligned_cols=202  Identities=13%  Similarity=0.123  Sum_probs=148.5

Q ss_pred             HHHHHhcC----CCCCCEEEEECCCCCCCCCceeEeCCCcccc---CCC----------CCCCcHHHHHHHHhcC---Cc
Q 022859           58 AYAFGNID----PTSISRVFLLGPSHHYYTPKCALSTATVYKT---PIG----------DLPLDLEVIEELKATG---KF  117 (291)
Q Consensus        58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~T---PlG----------~~~vD~~~~~~L~~~~---~~  117 (291)
                      ..+++.+.    ..+||+|||++|+|..... +.++.....+|   .+|          +.+.|.+++++|.+..   ++
T Consensus        33 ~~al~~l~~~l~~~~Pd~IVViS~H~~~~~~-~~i~~~~~~~g~~~~~g~p~~l~~~~y~~~gd~eLA~~i~~~~~~~gi  111 (282)
T TIGR02298        33 IDGHKEISRRAKEMGVDTIVVFDTHWLVNSG-YHINCNDQFSGSYTSHELPHFIQDLRYDYPGNPALGQLIADEAQEHGV  111 (282)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCCCcCCC-eEEecCCCCcceecCCCCChhhhCceeeCCCCHHHHHHHHHHHHHCCC
Confidence            45565553    3589999999997766533 33333222222   222          2778999999997743   33


Q ss_pred             eec--ccccCccccccccchHHHHHHhcCCCeeEEEEEeC--CCCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCCC
Q 022859          118 ELM--DICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVG--AVNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWGS  191 (291)
Q Consensus       118 ~~~--d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg--~~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g~  191 (291)
                      ...  +......||+.-|+|-||.   |+.++|||||.++  ..+.+++.+||++|+++++  +++++||+|+|+||...
T Consensus       112 ~~~~~~~~~~~lDHG~~vPL~~l~---p~~~ipvV~is~~~~~~~~~~~~~lG~al~~~i~~~~~rV~iIaSG~lSH~L~  188 (282)
T TIGR02298       112 KTLAHQVPSLGLEYGTLVPMRYMN---EDGHFKVVSIAAWCTVHDIEESRALGEAIRKAIEQSDGRVAVLASGSLSHRFW  188 (282)
T ss_pred             ceeeccCCCCCCCeehHhHHHHhC---CCCCCcEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEecccceecC
Confidence            321  3445679999999999965   4457999999987  5688999999999999975  57999999999999986


Q ss_pred             C------CCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCChhHHHHHHHHHhhCCCCCceE
Q 022859          192 R------FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICGRHPISVFLHMLGNCSTKIKIK  262 (291)
Q Consensus       192 ~------~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG~~~i~~~l~~~~~~~~~~~~~  262 (291)
                      .      +|+.|..      .+-.+++|+++++.++++|.++++++..++   ....||.+++.+|+++++.-+.+.+.+
T Consensus       189 ~~~~~~p~g~~~~a------~~f~~~~D~~v~~~l~~gd~~~l~~~~~~~~~~~age~g~~~~~~l~Gal~~~~~~~~~~  262 (282)
T TIGR02298       189 DNKDLAPEGMTTIA------SEFNRQVDLRVLELWRERDYREFCAMLPDYAVKCNGEGGMHDTVMLFGALGWDDYDGEVE  262 (282)
T ss_pred             cccCCCcccCCchh------hHHHHHHHHHHHHHHHcCCHHHHHHhCHHHHHhcCcccChHHHHHHHhccCCCCccccce
Confidence            3      3343321      133567899999999999999999987755   368999999999999995433223455


Q ss_pred             -EEeecCC
Q 022859          263 -FLRYEQS  269 (291)
Q Consensus       263 -ll~Y~~S  269 (291)
                       +..|.+|
T Consensus       263 ~l~~y~~~  270 (282)
T TIGR02298       263 VITEYFPS  270 (282)
T ss_pred             EeccccCC
Confidence             6678888

This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.

>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol

Probab=99.90  E-value=8.1e-23  Score=185.50  Aligned_cols=211  Identities=15%  Similarity=0.118  Sum_probs=156.6

Q ss_pred             HHHHHhcC----CCCCCEEEEECCCCCCCCCceeEeC--CCcccc-----CCCC----CCCcHHHHHHHHhcC---Ccee
Q 022859           58 AYAFGNID----PTSISRVFLLGPSHHYYTPKCALST--ATVYKT-----PIGD----LPLDLEVIEELKATG---KFEL  119 (291)
Q Consensus        58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~~~--~~~~~T-----PlG~----~~vD~~~~~~L~~~~---~~~~  119 (291)
                      ..+++.+.    ..+||+|||++|+|....+.+.+..  .....+     .+|.    ++.|.+++++|.+..   ++..
T Consensus        25 ~~al~~l~~~l~~~~Pd~IvviS~Hw~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~y~~~g~~eLA~~i~~~~~~~gi~~  104 (268)
T cd07371          25 SWAYERAGASLAASRPDVVLVYSTQWIAVLDHHWLTRPRSEGRHVDENWPEFGRLDYSINVDVELAEACVEEGRKAGLVT  104 (268)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCCccccCcEEecccccceeecCcccchhceeeecCCCCHHHHHHHHHHHHHCCCcE
Confidence            45565553    3589999999996666554344432  111111     2333    778999999997643   3322


Q ss_pred             --cccccCccccccccchHHHHHHhcCCCeeEEEEEeCC--CCHHHHHHHHHHHHHhhCC--CCeEEEEeCCCCCCCCC-
Q 022859          120 --MDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA--VNAENEAMYGRLFAKYVDD--PSNFFSVSSDFCHWGSR-  192 (291)
Q Consensus       120 --~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~--~~~~~~~~l~~~L~~~~~~--~~~liv~SsDlsH~g~~-  192 (291)
                        .+......||+.-|+|-||.   |+.+.++||+.++.  .+.+++.+||++|++++++  +|++||+|+|+||+..+ 
T Consensus       105 ~~~~~~~~~lDHG~~vPL~~l~---p~~~ipvV~vs~~~~~~~~~~~~~lG~al~~~l~~~~~rv~iIgSG~lsH~l~~~  181 (268)
T cd07371         105 RMMRYPRFPIDTGTITALTLMR---PGTDIPPVVISANNLYLSGEETEGEMDLAGKATRDAGKRVAVLGSGGLSHSHFHE  181 (268)
T ss_pred             EEecCCCCCCCchhHHHHHHhc---CCCCCCeEEEEecCcCCCHHHHHHHHHHHHHHHHHcCCcEEEEEecCccccccCC
Confidence              13445678999999999965   44478999999864  6889999999999988775  89999999999999631 


Q ss_pred             ----CCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc--C-CCcCChhHHHHHHHHHhhCCCCCceEEEe
Q 022859          193 ----FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY--D-NTICGRHPISVFLHMLGNCSTKIKIKFLR  265 (291)
Q Consensus       193 ----~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~--~-~~~CG~~~i~~~l~~~~~~~~~~~~~ll~  265 (291)
                          ++|.-       ....+++||+++++.+.++|.++++++..+.  . ...||...+..++.++...+  .++++++
T Consensus       182 ~~~~~~~~~-------~~~~~~~fD~~~~~~~~~gd~~~l~~~~~~~~~~a~~~~g~~~~~~l~gal~~~~--~~~~v~~  252 (268)
T cd07371         182 EIDPPKDHI-------ESEEGDKWNRRMLELMEQGDMSALFELLPQYIKEARADMGSKAFTWMLGAMGYPE--LAAEVHG  252 (268)
T ss_pred             CCCcccccc-------cchhhHHHHHHHHHHHHcCCHHHHHhcCHHHHHHhcccccHHHHHHHHHhcCCcc--cCccEee
Confidence                11111       1256789999999999999999999965333  3 37899999999999988765  4789999


Q ss_pred             ecCCCCCCCCCCCeeEeeEEEEE
Q 022859          266 YEQSSQCKTKRDSSVSYASAAAK  288 (291)
Q Consensus       266 Y~~S~~~~~~~~~~VgYas~~~~  288 (291)
                      |+.+        +.|||+.+.|.
T Consensus       253 Ye~~--------~G~G~~va~~~  267 (268)
T cd07371         253 YGTV--------YGSGNAVIEFN  267 (268)
T ss_pred             ccCC--------CccceEEEEEe
Confidence            9998        88999999885

This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.

>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol

Probab=99.89  E-value=2e-22  Score=182.86  Aligned_cols=224  Identities=17%  Similarity=0.217  Sum_probs=158.6

Q ss_pred             ceeeecCCchhchHHH--H---HHHHHhcC----CCCCCEEEEECCCCCCCC-----CceeEeCCCcc------ccCCCC
Q 022859           41 RGVIAPHAGYSYSGRA--A---AYAFGNID----PTSISRVFLLGPSHHYYT-----PKCALSTATVY------KTPIGD  100 (291)
Q Consensus        41 ~a~I~PHag~~ysg~~--a---a~ay~~l~----~~~~~~VvIlGp~H~~~~-----~~~~~~~~~~~------~TPlG~  100 (291)
                      -++++||.-....|.-  .   ..+|+.+.    +.+||+|||++|+|...+     +.+++...+.+      ..|-..
T Consensus         6 ~~~~~~H~~~~~~~~~~~~~~~~~al~~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~~~~~~~~~g~p~~~   85 (268)
T cd07367           6 GAAATSHILMSPKGVEDQAARVVQGMAEIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTADSYTPFGDMDIPREL   85 (268)
T ss_pred             EEEecCCcCcCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeeccccccCCcCCCCccc
Confidence            3678888532221211  1   33444442    358999999999997653     23455433333      334446


Q ss_pred             CCCcHHHHHHHHhcC---CceecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCC-----CHHHHHHHHHHHHHh
Q 022859          101 LPLDLEVIEELKATG---KFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAV-----NAENEAMYGRLFAKY  172 (291)
Q Consensus       101 ~~vD~~~~~~L~~~~---~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~-----~~~~~~~l~~~L~~~  172 (291)
                      ++.|.+++++|.+..   ++..........||+.-|+|-||.   |+.++|||||.++..     +.+++.+||++|+++
T Consensus        86 ~~gd~~LA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~---p~~~iPvV~isin~~~~p~~~~~~~~~lG~al~~~  162 (268)
T cd07367          86 FPGHREFARAFVRQAAEDGFDLAQAEELRPDHGVMVPLLFMG---PKLDIPVVPLIVNINTDPAPSPRRCWALGKVLAQY  162 (268)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCeeeecCccCCcchhchHHHhC---CCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHH
Confidence            889999999997643   443222233468999999999965   335899999999553     678999999999998


Q ss_pred             hC-----CCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCChh-
Q 022859          173 VD-----DPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICGRH-  243 (291)
Q Consensus       173 ~~-----~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG~~-  243 (291)
                      ++     ++|++||+|+||||..   ++.+.+       ..+++||+++++.+.++|.+.+.++..++   ....||.. 
T Consensus       163 i~~~~~~d~rV~iiaSGgLSH~l---~~~~~~-------~~~~efD~~i~~~l~~gd~~~L~~~~~~~~~~~ag~~g~e~  232 (268)
T cd07367         163 VEKRRPAGERVAVIAAGGLSHWL---GVPRHG-------EVNEAFDRMFLDLLEGGNGERLAGMGNDEILDQAGNGGLEI  232 (268)
T ss_pred             HHhcCCCCCcEEEEEcccccCCC---CCCccc-------ccCHHHHHHHHHHHHcCCHHHHHhCCHHHHHHhCcccchHH
Confidence            64     4789999999999996   233221       34689999999999999999999987533   56789999 


Q ss_pred             -HHHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEE
Q 022859          244 -PISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAA  287 (291)
Q Consensus       244 -~i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~  287 (291)
                       +..++++++...    ++++++|+...+      -..|++.+-|
T Consensus       233 ~~w~~~~GAl~~~----~~~v~~Ye~~~~------w~~g~~~~~~  267 (268)
T cd07367         233 VNWIMAAAAVEAQ----SGEKVYYEPMPQ------WMTGMGGMEF  267 (268)
T ss_pred             HHHHHHHhhcCCC----CccEEEEEEhHH------hhhhheeeec
Confidence             877777776543    479999999743      4566666543

CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.

>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=99.88  E-value=1.4e-21  Score=177.51  Aligned_cols=189  Identities=14%  Similarity=0.140  Sum_probs=141.8

Q ss_pred             cCCCCCCEEEEECCCCCCCC--C---ceeEeCCCccccC---CC-----CCCCcHHHHHHHHhcC---CceecccccCcc
Q 022859           64 IDPTSISRVFLLGPSHHYYT--P---KCALSTATVYKTP---IG-----DLPLDLEVIEELKATG---KFELMDICVDEA  127 (291)
Q Consensus        64 l~~~~~~~VvIlGp~H~~~~--~---~~~~~~~~~~~TP---lG-----~~~vD~~~~~~L~~~~---~~~~~d~~~~~~  127 (291)
                      +.+.+||+|||+|++|...+  +   .+++.........   +|     .++.|.+++++|.+..   ++..........
T Consensus        44 v~~~~PDvvVvis~dH~~~ff~d~~p~f~i~~~~~~~g~~~~~g~~~~~~~~~~~~lA~~i~~~l~~~gid~~~~~~~~l  123 (278)
T PRK13364         44 LEKVKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPEYSNADEGWGIPTLAPFKGDTELSWHIIESLVEEEFDITTCQEMLV  123 (278)
T ss_pred             HHHhCCCEEEEECCchHhhhccccCCeEEEeeCceecCChhhcCCCCCCCCCCCHHHHHHHHHHHHHcCCCeecccCCCC
Confidence            34678999999999998764  3   4666665555555   44     7899999999998754   333222234568


Q ss_pred             ccccccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCC--CCCCc
Q 022859          128 EHSMEMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGS--RFNYM  196 (291)
Q Consensus       128 EHslEvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~--~~g~~  196 (291)
                      ||+.-|+|.||..-. +.++|||||.++.     .+.+++.+||++|+++++    ++|++||+|+||||+..  ++||.
T Consensus       124 DHG~~vPL~~l~~~~-d~~~pvVpv~ln~~~~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH~l~~~p~G~~  202 (278)
T PRK13364        124 DHAFTLPLELFWPGR-DYPVKVVPVCINTVQHPLPSARRCYKLGQAIGRAIASWPSDERVVVIGTGGLSHQLDGERAGFI  202 (278)
T ss_pred             CcchhhhHHHhCccc-CCCCCEEEEEeeccCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCCCCCcccC
Confidence            999999999976532 1248899999944     468999999999999984    57999999999999963  44443


Q ss_pred             cCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCCh--hHHHHHHHHHhhCCCCCceEEEeecC
Q 022859          197 HYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICGR--HPISVFLHMLGNCSTKIKIKFLRYEQ  268 (291)
Q Consensus       197 p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG~--~~i~~~l~~~~~~~~~~~~~ll~Y~~  268 (291)
                                  +++||+++++.+.+ |.+++.++..+.   +...||.  .+..++++++.. +. .+.....|..
T Consensus       203 ------------~~~fD~~~l~~l~~-d~~~l~~~~~~e~~~~AG~~g~Eir~wi~~~gAl~~-~~-~~~~~~~y~p  264 (278)
T PRK13364        203 ------------NKDFDLQCMDSLVS-DPEWLTQYSNHELVELAGTQGVELLNWLAMRGALGG-KV-REVHRNYHIP  264 (278)
T ss_pred             ------------CHHHHHHHHHHHHh-CHHHHHcCCHHHHHHHcccccHHHHHHHHHHHhhcC-Cc-eEEEEeeeec
Confidence                        27999999999999 999999876332   5678999  888888888876 32 3445555543

>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate

Probab=99.88  E-value=1.8e-21  Score=180.39  Aligned_cols=220  Identities=14%  Similarity=0.197  Sum_probs=157.4

Q ss_pred             eeeecCCchhchHHHHHHHHHhc----CCCCCCEEEEECCCCCCCCC-----ceeEeCCCcccc----------------
Q 022859           42 GVIAPHAGYSYSGRAAAYAFGNI----DPTSISRVFLLGPSHHYYTP-----KCALSTATVYKT----------------   96 (291)
Q Consensus        42 a~I~PHag~~ysg~~aa~ay~~l----~~~~~~~VvIlGp~H~~~~~-----~~~~~~~~~~~T----------------   96 (291)
                      .-|.|-.+=....++. .+|..+    .+.+||+|||+||+|...+.     .+++...+.+..                
T Consensus        57 ~~i~~e~~~~~~~~~~-~a~~~~~~~i~~~~PDvlVIispDH~~~f~~~~~P~f~I~~~~~~~g~~~~~~~~~~~~~~~~  135 (328)
T cd07366          57 NQITPEEMAARYARCQ-AALDRLADFIRAARIDVAVIVGDDQKELFDEALLPAFAIYYGDTITNGPRTREQLDRMPPHEA  135 (328)
T ss_pred             cccCccccccchHHHH-HHHHHHHHHHHHhCCCEEEEEcCccHhhhccccCCceEEeecceeecChhhcccccccccccc
Confidence            3445554433333433 345444    35789999999999986543     466654333332                


Q ss_pred             -------CCCCCCCcHHHHHHHHhcC---Cceec--cc--ccCccccccccchHHHHHHhcCCCeeEEEEEeCC------
Q 022859           97 -------PIGDLPLDLEVIEELKATG---KFELM--DI--CVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA------  156 (291)
Q Consensus        97 -------PlG~~~vD~~~~~~L~~~~---~~~~~--d~--~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~------  156 (291)
                             +-..++.|.+++++|.+..   ++...  +.  .....+|++-+.   +++++|+.++|||||.++.      
T Consensus       136 ~~~~~~~~~~~~~gd~eLA~~I~~~l~~~G~dv~~~~~~~~~~~lDHG~~~~---l~~~~p~~~iPVVpisin~~~~p~~  212 (328)
T cd07366         136 AAGYAPDEARTYPCHPELARHLIKHTVADGFDVAALDHLPDTVGIPHAFGFI---YRRIMGDLVIPVVPVLINTFYPPNQ  212 (328)
T ss_pred             ccccCCCCCcCCCCCHHHHHHHHHHHHHcCCCeeeecccCcccCCCcchhhH---HHHhcCCCCCcEEEEeecCCCCCCC
Confidence                   3455889999999998754   33221  11  112468995444   3446665689999999977      


Q ss_pred             CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHH
Q 022859          157 VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYL  232 (291)
Q Consensus       157 ~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~  232 (291)
                      .+.+++.+||++|+++++    ++|++||+|+||||..                 .+++||+++++.+.++|.+.|+++.
T Consensus       213 ps~~r~y~lG~aL~~ai~~~~~d~rV~IIaSGgLSH~l-----------------~~~eFD~~~l~~l~~gD~~~L~~~~  275 (328)
T cd07366         213 PSARRCFEFGRAVARAIRSWPGDARVGVIASGGLSHFV-----------------IDEEFDRRILDALRNRDAEFLSSLP  275 (328)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCC-----------------ChHHHHHHHHHHHHcCCHHHHHcCC
Confidence            367899999999999985    6799999999999994                 2379999999999999999999876


Q ss_pred             Hhc-CCCcCChhHHHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeE
Q 022859          233 LEY-DNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYAS  284 (291)
Q Consensus       233 ~~~-~~~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas  284 (291)
                      .+. ++..||.....++++++...+  .++++++|+.+....--+..++|++.
T Consensus       276 ~~~~~aG~~elr~wi~~~GAl~~~~--~~~~vl~Ye~~~r~~~~TG~~~~f~~  326 (328)
T cd07366         276 EAHLQSGTSELKNWIAAAGALDDLG--LKMTSVDYVPCYRTEAGTGTAMGFVA  326 (328)
T ss_pred             HHHHhccchhHHHHHHHHHhhcCCC--cceeEEEeeCCccccccccceeeEEe
Confidence            544 567899999999999998765  47899999998622222335566654

3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway

Probab=99.88  E-value=1.3e-21  Score=178.32  Aligned_cols=209  Identities=14%  Similarity=0.175  Sum_probs=152.3

Q ss_pred             HHHHHhcC----CCCCCEEEEECCCCCCCCCc-----eeEeCCCccccCCCC--------CCCcHHHHHHHHhcC---Cc
Q 022859           58 AYAFGNID----PTSISRVFLLGPSHHYYTPK-----CALSTATVYKTPIGD--------LPLDLEVIEELKATG---KF  117 (291)
Q Consensus        58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~~-----~~~~~~~~~~TPlG~--------~~vD~~~~~~L~~~~---~~  117 (291)
                      ..+|+.+.    +.+||+|||+||+|...+..     +++... +..+|+|.        ++.|++++++|.+..   ++
T Consensus        32 ~~a~~~~~~~v~~~~pD~ivvi~~dH~~~f~~~~~P~f~i~~~-~~~g~~~~~~~~~~~~~~g~~eLA~~i~~~l~~~g~  110 (277)
T cd07368          32 WHAYAICAERLAALQVTSVVVIGDDHYTLFGTYCLPMYLIGTG-DVDGPYDPLPGLPRAVIENNEPLAHHIMQHGLEYGI  110 (277)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEcCchHhhhhhccCCceEEecc-cccCCccccCCCCcccCcCCHHHHHHHHHHHHHcCC
Confidence            44555543    57899999999999887543     244433 36777764        889999999998754   34


Q ss_pred             eecccccCccccccccchHHHHHH--hcCCCeeEEEEEeC-----CCCHHHHHHHHHHHHHhhC----CCCeEEEEeCCC
Q 022859          118 ELMDICVDEAEHSMEMHLPYLAKV--FEGHLIKIVPILVG-----AVNAENEAMYGRLFAKYVD----DPSNFFSVSSDF  186 (291)
Q Consensus       118 ~~~d~~~~~~EHslEvqlPfL~~~--~~~~~~~IVPi~vg-----~~~~~~~~~l~~~L~~~~~----~~~~liv~SsDl  186 (291)
                      ..........||+.-++|-||..-  +-+.++++|||.++     ..+.+++.+||++|+++++    +++++||+|+|+
T Consensus       111 ~~~~~~~~~lDHG~~vPL~~l~~~~~~~~~~~p~VPV~~n~~~~p~~~~~~~~~lG~al~~ai~~~~~d~rVliIaSG~L  190 (277)
T cd07368         111 DWAVARSFTVDHAATIPIHLAVRPVRAKGKGMRAIPVYLATGVDPFITSWRAHELGRVIGAAVEAWQGDERVAIIGSGGI  190 (277)
T ss_pred             CEeeecCcCCCcchhccHHHHhCcccccCCCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCcc
Confidence            222223445799999999998420  00137889999985     4677999999999999775    679999999999


Q ss_pred             CCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCC--hhHHHHHHHHHhhCCCCCce
Q 022859          187 CHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICG--RHPISVFLHMLGNCSTKIKI  261 (291)
Q Consensus       187 sH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG--~~~i~~~l~~~~~~~~~~~~  261 (291)
                      ||.....   +.+       ..+++||+++++.+.++|.++|+++..++   ....||  ..+..++++++..+    ++
T Consensus       191 SH~l~~~---~~~-------~~~~~fD~~~~~~l~~gd~~~L~~~~~~~~~~~aG~gg~e~~~~~~~~Gal~~~----~~  256 (277)
T cd07368         191 SHWVGTA---EMG-------AVNEGFDREIMKLVAQGDLAALIALSDEEILEDGGNGGMEIRNWACAMGALPAA----RG  256 (277)
T ss_pred             cCCCCCc---ccc-------ccCHHHHHHHHHHHHcCCHHHHHhCCHHHHHHHcccccHHHHHHHHHHHhcCCC----Cc
Confidence            9997322   221       34589999999999999999999986544   345677  56777777777543    68


Q ss_pred             EEEeecCCCCCCCCCCCeeEeeEEEE
Q 022859          262 KFLRYEQSSQCKTKRDSSVSYASAAA  287 (291)
Q Consensus       262 ~ll~Y~~S~~~~~~~~~~VgYas~~~  287 (291)
                      ++++|+...+      -.+|++.+-|
T Consensus       257 ~vl~Ye~~~~------w~~G~~~~~~  276 (277)
T cd07368         257 EVIAYEPVAE------WVTGLGFMQL  276 (277)
T ss_pred             cEEEEechHH------HHhhhheeec
Confidence            9999998632      4566666543

This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP)

Probab=99.86  E-value=1e-20  Score=175.21  Aligned_cols=198  Identities=17%  Similarity=0.190  Sum_probs=139.4

Q ss_pred             CCCCCEEEEECCCCCCCC-C----ceeEeCCCccccCCC----CCCC--------cHHHHHHHHhcC---CceecccccC
Q 022859           66 PTSISRVFLLGPSHHYYT-P----KCALSTATVYKTPIG----DLPL--------DLEVIEELKATG---KFELMDICVD  125 (291)
Q Consensus        66 ~~~~~~VvIlGp~H~~~~-~----~~~~~~~~~~~TPlG----~~~v--------D~~~~~~L~~~~---~~~~~d~~~~  125 (291)
                      +.+||+|||++++|...+ .    .+++.....+++++|    .+.+        |++++++|.+..   ++...-....
T Consensus        44 ~~~PD~iVV~~sdH~~~~f~d~~P~f~I~~~~~~~G~~~~~~~~~~~~~~~~~~gd~eLA~~I~~~l~~~G~dva~~~~~  123 (329)
T cd07369          44 AARPDVIIAFLDDHFENHFRTNMPTIAIGVAESHSGPADQLMEALRVPKKHYFPGNPEVAEQLLRALVHDSFDCARMGEI  123 (329)
T ss_pred             HhCCCEEEEEcCCchhhhccccCccEEEeecceeeccchhccccCCCCcccCCCCCHHHHHHHHHHHHHCCCCeeecCCc
Confidence            568999999999998733 2    477777667776743    4444        999999997644   3322111123


Q ss_pred             ccccccccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCC-----
Q 022859          126 EAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGS-----  191 (291)
Q Consensus       126 ~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~-----  191 (291)
                      ..+|++-|+|-||...   .++++|||.++.     .+.+++.+||++|+++++    |+|++||+|+||||+.+     
T Consensus       124 ~~DHG~~vPL~~l~p~---~~ipvVpI~in~~~~p~~~~~r~~~lG~AI~~aie~~~~d~rVaiIaSG~LSH~p~~~~~~  200 (329)
T cd07369         124 EYGNNLLVPWKLMKPD---LDVSVIPIYTNVFSPPLMKYSRAYALGAAVRKAIEDLPDDLRVAFMATGGLSHWPPYWNPN  200 (329)
T ss_pred             CCCccceeeHHHhcCC---CCCcEEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCcccccc
Confidence            4699999999996643   378999996644     567899999999999995    47999999999999531     


Q ss_pred             ---------------CCCCccCCc---------------------cccchhH-HHHHHHHHHHHHHHcCChHHHHHHHHh
Q 022859          192 ---------------RFNYMHYDK---------------------KHGVIHK-SIEALDKMGMDIIETGDPDAFKKYLLE  234 (291)
Q Consensus       192 ---------------~~g~~p~~~---------------------~~~~~~~-~~~~~D~~~i~~i~~~d~~~~~~~~~~  234 (291)
                                     +|||.|-..                     +....+. .+++||+++++.+.++|.+.+.++..+
T Consensus       201 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~fD~~~l~~l~~gd~~~l~~~~~~  280 (329)
T cd07369         201 QPETDPFLQRMKEYQTYGKPVLEKDPNLFVDLAAYEIEMAKKNQWPLNSKHPLVNAAWDRKFLKAYCRGDSEWLKNLTYE  280 (329)
T ss_pred             chhhhhhhhhccccCcCCcCcchhhhhhhhhhhhhhhhhhhhhcccccccCCccCHHHHHHHHHHHHcCCHHHHHcCCHH
Confidence                           466633100                     0001122 478999999999999999999987643


Q ss_pred             c---CCCcCChhH--HHHHHHHHhhCCCCCceEEEeecCCC
Q 022859          235 Y---DNTICGRHP--ISVFLHMLGNCSTKIKIKFLRYEQSS  270 (291)
Q Consensus       235 ~---~~~~CG~~~--i~~~l~~~~~~~~~~~~~ll~Y~~S~  270 (291)
                      .   ....||...  ..++++++   +. .+.++++|+...
T Consensus       281 ~~~~~aG~~g~e~~~wi~~~gAl---~~-~~~~~~~Ye~~~  317 (329)
T cd07369         281 EVEEEGGHGGHEILNWVAVMGAM---DG-KKAKLLLYEPVL  317 (329)
T ss_pred             HHHHHcccchHHHHHHHHHHHhc---CC-CCcceEEEechH
Confidence            3   345677766  34444544   33 368999999864

This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=99.84  E-value=5e-20  Score=167.80  Aligned_cols=207  Identities=13%  Similarity=0.105  Sum_probs=140.5

Q ss_pred             HHHHHhc----CCCCCCEEEEECCCCCCCC--Cc---eeEeCCCcc-----ccCCC---CCCCcHHHHHHHHhcC---Cc
Q 022859           58 AYAFGNI----DPTSISRVFLLGPSHHYYT--PK---CALSTATVY-----KTPIG---DLPLDLEVIEELKATG---KF  117 (291)
Q Consensus        58 a~ay~~l----~~~~~~~VvIlGp~H~~~~--~~---~~~~~~~~~-----~TPlG---~~~vD~~~~~~L~~~~---~~  117 (291)
                      -.+|+.+    ++.+||+|||+|++|...+  +.   +++.....+     ..|..   .++.|.+++++|.+..   ++
T Consensus        34 ~~a~~~i~~~v~~~~PDviVvi~sdH~~~f~~d~~p~f~Ig~~~~~~~~~~g~~~~~~~~~~g~~eLA~~i~~~~~~~g~  113 (279)
T PRK13365         34 FDGYEPVAAWLAEQKADVLVFFYNDHCTTFFFDLYPTFALGVGERFPVADEGAGLRPLPPIRGDVQLQAHIAECLVNDEF  113 (279)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEcCchHHHhccccCCceEEEecccccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            3445544    3578999999999998765  33   554443333     22223   3888999999998754   33


Q ss_pred             eecccccCccccccccchHHHHHHhcCCCeeEEEEEeC-----CCCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCC
Q 022859          118 ELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVG-----AVNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCH  188 (291)
Q Consensus       118 ~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg-----~~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH  188 (291)
                      ...-......||+.-|+|.||..-..+.++|||||.++     ..+.+++.+||++|+++++    ++|++||+|+||||
T Consensus       114 ~~~~~~~~~lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~~p~~~~~~~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH  193 (279)
T PRK13365        114 DLTVFQDKPIDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQYPLPTARRCYRLGQALRRAIESYPEDLRVVVVGTGGLSH  193 (279)
T ss_pred             CeeeccCCCCCchhhhHHHHhCCccccCCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCcccc
Confidence            22212245689999999999764211124889999987     3467999999999999984    56999999999999


Q ss_pred             CCC--CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcC---CCcCChhHH--HHHHHHHhhCCCCCce
Q 022859          189 WGS--RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYD---NTICGRHPI--SVFLHMLGNCSTKIKI  261 (291)
Q Consensus       189 ~g~--~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~---~~~CG~~~i--~~~l~~~~~~~~~~~~  261 (291)
                      +..  ++||.|            ++||+++++.+. +|.+.+.++..+.-   ...||...+  .++++++....  .+.
T Consensus       194 ~l~~~~~g~~~------------~~~D~~f~~~l~-~d~~~l~~~~~~~~~~~aG~~g~ei~~wi~~~gal~~~~--~~~  258 (279)
T PRK13365        194 QIHGERSGFNN------------TEWDMEFLDRFQ-HAPETLTDLTHTDYVRLGGAESVEQIMWLAMRGALGGPI--RKL  258 (279)
T ss_pred             CCCCCCccCCC------------HHHHHHHHHHHh-hCHHHHHcCCHHHHHHHcCcccHHHHHHHHHHHhhcCCC--eEE
Confidence            974  444432            689999999997 59999998766443   344555443  22334443211  234


Q ss_pred             EEEeecCCCCCCCCCCCeeEeeEEEEE
Q 022859          262 KFLRYEQSSQCKTKRDSSVSYASAAAK  288 (291)
Q Consensus       262 ~ll~Y~~S~~~~~~~~~~VgYas~~~~  288 (291)
                      ++..|..+         .+||+.+.|+
T Consensus       259 ~~~yy~p~---------~~G~~~~~~~  276 (279)
T PRK13365        259 HQNYYLMT---------TTAMTVVLYE  276 (279)
T ss_pred             EEEEEEEe---------cccEEEEEec
Confidence            44555543         3899988875

>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate

Probab=99.84  E-value=4.9e-20  Score=167.74  Aligned_cols=209  Identities=17%  Similarity=0.214  Sum_probs=142.1

Q ss_pred             HHHHHhcC----CCCCCEEEEECCCCCCCC-C----ceeEeCCCccccC--------CCCCCCcHHHHHHHHhcC---Cc
Q 022859           58 AYAFGNID----PTSISRVFLLGPSHHYYT-P----KCALSTATVYKTP--------IGDLPLDLEVIEELKATG---KF  117 (291)
Q Consensus        58 a~ay~~l~----~~~~~~VvIlGp~H~~~~-~----~~~~~~~~~~~TP--------lG~~~vD~~~~~~L~~~~---~~  117 (291)
                      ..+|+.++    +.+||+|||++++|...+ .    .+++......+..        ...++.|++++++|.+..   ++
T Consensus        34 ~~a~~~~~~~i~~~~PD~iVvi~~dH~~~f~~d~~p~f~Ig~~~~~~~~d~~~~~~~~~~~~g~~~LA~~i~~~~~~~g~  113 (277)
T cd07950          34 FDGYEPVKQWLAEQKPDVLFMVYNDHVTSFFFDHYSAFALGVGDSYEVADEGGGPRDLPPIRGHAALAQHIAESLVADEF  113 (277)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEcCcHHHHhccccCCcEEEEecccccccccccCCccCCCCCCCHHHHHHHHHHHHhcCC
Confidence            45555553    568999999998897654 2    3555444444321        257899999999998753   33


Q ss_pred             eecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCC-----CHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCC
Q 022859          118 ELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAV-----NAENEAMYGRLFAKYVD----DPSNFFSVSSDFCH  188 (291)
Q Consensus       118 ~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~-----~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH  188 (291)
                      ..........||+.-|+|-||..-..+.+++||||.++..     +.+++.+||++|+++++    ++|++||+|+||||
T Consensus       114 ~~~~~~~~~lDHG~~vPL~~l~p~~~~~~~~vVpi~~~~~~~~l~~~~~~~~lG~al~~~i~~~~~d~rv~iIaSG~lSH  193 (277)
T cd07950         114 DLTFFQDKPLDHGCFSPLSLLLPHEDGWPVKVVPLQVGVLQFPLPTARRCYKLGQALRRAIESYPEDLKVAVVGTGGLSH  193 (277)
T ss_pred             CeeeccCCCCCceeeeeHHHhCcccccCCCceEEEEEEeEecCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEcCcccc
Confidence            2222234568999999999976421012478999988775     78999999999999975    45899999999999


Q ss_pred             CCC--CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCChhH--HHHHHHHHhhCCCC-CceEE
Q 022859          189 WGS--RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHP--ISVFLHMLGNCSTK-IKIKF  263 (291)
Q Consensus       189 ~g~--~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~--i~~~l~~~~~~~~~-~~~~l  263 (291)
                      +..  ++|+.|            ++||+++++.+.+ |.+++.++..+.-...+|++.  +..-+.++..++.+ .+.++
T Consensus       194 ~l~~~~~g~~~------------~~~D~~f~~~l~~-d~~~l~~~~~~~~~~~aG~~~~E~~~wi~~~gal~~~~~~~~~  260 (277)
T cd07950         194 QVHGERAGFNN------------TEWDMEFLDLIEN-DPESLAAMTHADYATLGGAEGAEVIMWLIMRGALSDRVRELHR  260 (277)
T ss_pred             CCCCCCCCCCC------------HHHHHHHHHHHHh-CHHHHHcCCHHHHHHHcCcchHHHHHHHHHHHhhcCCCeEeee
Confidence            974  333322            6899999999997 999998876555445565433  33333333444321 12333


Q ss_pred             EeecCCCCCCCCCCCeeEeeEEEEE
Q 022859          264 LRYEQSSQCKTKRDSSVSYASAAAK  288 (291)
Q Consensus       264 l~Y~~S~~~~~~~~~~VgYas~~~~  288 (291)
                       .|+.+        +.+||+.+.|+
T Consensus       261 -~yy~p--------~~tg~~~~~~~  276 (277)
T cd07950         261 -NYYLP--------SMTGIATLVFE  276 (277)
T ss_pred             -eEEee--------eecceeEEEec
Confidence             44443        46999998874

Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en

>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase

Probab=99.84  E-value=9.4e-20  Score=165.75  Aligned_cols=196  Identities=14%  Similarity=0.123  Sum_probs=142.9

Q ss_pred             HHHHhc----CCCCCCEEEEECCCCCCCC--C---ceeEeCCCccccC---C-----CCCCCcHHHHHHHHhcC---Cce
Q 022859           59 YAFGNI----DPTSISRVFLLGPSHHYYT--P---KCALSTATVYKTP---I-----GDLPLDLEVIEELKATG---KFE  118 (291)
Q Consensus        59 ~ay~~l----~~~~~~~VvIlGp~H~~~~--~---~~~~~~~~~~~TP---l-----G~~~vD~~~~~~L~~~~---~~~  118 (291)
                      .+|+.+    .+.+||+|||++++|...+  +   .+++.....+.+.   +     ..++.|++++++|.+..   ++.
T Consensus        35 ~a~~~~~~~v~~~~PD~iVvis~dH~~~f~~~~~p~f~i~~~~~~~g~~~~~g~~~~~~~~g~~~LA~~i~~~~~~~g~d  114 (276)
T cd07949          35 DGFPPVHDWLEKAKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPSYRNADEGWGIPALAPFKGDPELSWHLIESLVEDEFD  114 (276)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCcHHhhhccccCCcEEEecCccccCcccccCCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence            455544    3578999999998896654  2   4666644433322   2     56889999999998754   343


Q ss_pred             ecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCC-----CHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCC
Q 022859          119 LMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAV-----NAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHW  189 (291)
Q Consensus       119 ~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~-----~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~  189 (291)
                      .........||+.-|+|.||..-. +.++|||||.++..     +.+++.+||++|+++++    ++|++||+|+||||+
T Consensus       115 ~~~~~~~~lDHG~~vPL~~l~~~~-d~~~pvV~i~~n~~~~p~~~~~~~~~lG~al~~~i~~~~~d~rv~iiaSG~lSH~  193 (276)
T cd07949         115 ITTCQEMLVDHACTLPMQLFWPGA-EWPIKVVPVSINTVQHPLPSPKRCFKLGQAIGRAIESYPEDLRVVVLGTGGLSHQ  193 (276)
T ss_pred             eeccCCCCCCcchhhHHHHhcCcc-CCCCCEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccC
Confidence            322234678999999999977532 12589999999854     77899999999999886    368999999999999


Q ss_pred             CCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHH-h--cCCCcCChh--HHHHHHHHHhhCCCCCceEEE
Q 022859          190 GSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLL-E--YDNTICGRH--PISVFLHMLGNCSTKIKIKFL  264 (291)
Q Consensus       190 g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~-~--~~~~~CG~~--~i~~~l~~~~~~~~~~~~~ll  264 (291)
                      ...   .+++       ..+++||+++++.+. +|.+.+.++.. +  .+...||..  +..++++++....  .+...+
T Consensus       194 l~~---~~~g-------~~~~~fD~~~~~~l~-~d~~~L~~~~~~~~~~~AG~~g~e~~~wi~~~GAl~~~~--~~~~~~  260 (276)
T cd07949         194 LDG---ERAG-------FINKDFDRYCLDKMV-DNPEWLTKYSIEELVELAGTQGVEFLMWIAMRGALGDEV--REVHRN  260 (276)
T ss_pred             CCC---CCcc-------cchHHHHHHHHHHHh-cCHHHHHcCCHHHHHHHcccccHHHHHHHHHHHhhccCC--eeeeee
Confidence            631   1121       134899999999999 59999988763 3  256789999  5777788876633  367777


Q ss_pred             eecC
Q 022859          265 RYEQ  268 (291)
Q Consensus       265 ~Y~~  268 (291)
                      .|..
T Consensus       261 ~y~~  264 (276)
T cd07949         261 YHIP  264 (276)
T ss_pred             eEee
Confidence            7775

This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=99.82  E-value=5.6e-19  Score=160.96  Aligned_cols=185  Identities=14%  Similarity=0.145  Sum_probs=132.7

Q ss_pred             HHHHHhcC----CCCCCEEEEECCCCCCCCC-----ceeEeCC---CccccCCCCCC-----CcHHHHHHHHhcC---Cc
Q 022859           58 AYAFGNID----PTSISRVFLLGPSHHYYTP-----KCALSTA---TVYKTPIGDLP-----LDLEVIEELKATG---KF  117 (291)
Q Consensus        58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~-----~~~~~~~---~~~~TPlG~~~-----vD~~~~~~L~~~~---~~  117 (291)
                      ..+|+.++    +.+||+|||+|++|...+.     .+++...   ..+..++|..+     .|++++++|.+..   ++
T Consensus        34 ~~a~~~i~~~i~~~~PDvvVii~~dH~~~f~~d~~P~f~Ig~~~~~~~~~~~~g~~~v~~~~g~~eLA~~i~~~l~~~g~  113 (284)
T PRK13366         34 FKGYEFSKQWEKEEKPDVIFLVYNDHATAFSLDIIPTFAIGTAAEYQPADEGWGPRPVPKVIGHPDLAAHIAQSVIQDDF  113 (284)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEcCCcHHhhcccCCCceEEeeCceecCcccccCCCCCCCCCCCHHHHHHHHHHHHHCCC
Confidence            44555553    5689999999999987653     3554432   34556677544     4599999987654   34


Q ss_pred             eecccccCccccccccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCC
Q 022859          118 ELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCH  188 (291)
Q Consensus       118 ~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH  188 (291)
                      ..........||+.-|+|-||.--....++|||||.++.     .+.+++.+||++|+++++    +++++||+|+||||
T Consensus       114 ~~~~~~~~~lDHG~~vPL~~l~p~~~~~~ipvVpisvn~~~~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSGgLSH  193 (284)
T PRK13366        114 DLTIVNKMDVDHGLTVPLSLMCGQPDAWPCPVIPFAVNVVQYPVPSGRRCFALGQAIRRAVESYDEDLNVQIWGTGGMSH  193 (284)
T ss_pred             CEeecCCCCCCccHHHHHHHhCccccCCCCceEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCcccc
Confidence            322222356899999998886531101148999997655     367899999999999984    46799999999999


Q ss_pred             CCC--CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCChhHH--HHHHHHHhhC
Q 022859          189 WGS--RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICGRHPI--SVFLHMLGNC  255 (291)
Q Consensus       189 ~g~--~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG~~~i--~~~l~~~~~~  255 (291)
                      +..  ++|+.            +++||+++++.+.+ |.+++.++..++   +...||...+  .++++++...
T Consensus       194 ~l~~p~~g~~------------~~~fD~~~l~~l~~-d~~~l~~l~~~~~~~~AG~~G~e~~~Wi~~~gAl~~~  254 (284)
T PRK13366        194 QLQGPRAGLI------------NREWDNAFLDRLIA-DPDGLSKMPHIDYVREAGSEGIELVMWLIARGAMSDV  254 (284)
T ss_pred             CCCCCCCCCC------------cHHHHHHHHHHHhc-CHHHHHcCCHHHHHHHcccchHHHHHHHHHHHhhhcc
Confidence            953  23332            47999999999987 999998876522   6678999888  6667777663

>PRK13367 protocatechuate 4,5-dioxygenase; Provisional

Probab=99.82  E-value=5.7e-19  Score=167.01  Aligned_cols=203  Identities=17%  Similarity=0.196  Sum_probs=142.5

Q ss_pred             cCCCCCCEEEEECCCCCCCC-----CceeEeCCCccccCCC---------CCCCcHHHHHHHHhcC---CceecccccCc
Q 022859           64 IDPTSISRVFLLGPSHHYYT-----PKCALSTATVYKTPIG---------DLPLDLEVIEELKATG---KFELMDICVDE  126 (291)
Q Consensus        64 l~~~~~~~VvIlGp~H~~~~-----~~~~~~~~~~~~TPlG---------~~~vD~~~~~~L~~~~---~~~~~d~~~~~  126 (291)
                      |++.+||.|||+|++|...|     +.+++-....+. |.+         +++-+++++++|.+..   ++.........
T Consensus        44 l~~~~PDvvVv~~nDH~~~Ff~d~~P~F~IG~~~~~~-~~D~~g~P~~ly~~~G~peLA~~I~~~L~~~gfD~a~~~~~~  122 (420)
T PRK13367         44 LEEKKPDVLLYIFNDHVTSFFFDHYSAFALGIDEQYA-VADEGGGPRDLPPVRGHAALSRHIGASLMADEFDMSFFQDKP  122 (420)
T ss_pred             HHHhCCCEEEEEccchhhhcCcccCCCeEEEeccccc-ccccCCCccccCCCCCCHHHHHHHHHHHHhcCCCeecccCCC
Confidence            34578999999999999865     235554322222 433         4555999999998754   44332234567


Q ss_pred             cccccccchHHHHHHhcCCCeeEEEEEeCCC-----CHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCC--CCCC
Q 022859          127 AEHSMEMHLPYLAKVFEGHLIKIVPILVGAV-----NAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGS--RFNY  195 (291)
Q Consensus       127 ~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~-----~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~--~~g~  195 (291)
                      .||++-|+|-||.---.+.++++|||.|+..     +.+++.+||++|+++++    +++|+||+|+|+||...  ++|+
T Consensus       123 lDHG~~VPL~~l~p~ad~~P~~VVPi~invvq~Plps~~r~~~LG~AL~~aie~~~~d~rVlIIgSGgLSH~L~~~~~g~  202 (420)
T PRK13367        123 LDHGLFSPLSALLPHDDGWPVQVVPLQVGVLQFPIPSARRCYKLGQALRRAIESYPEDLKVAIVATGGLSHQVHGERCGF  202 (420)
T ss_pred             CCcchhhhHHHhCCccccCCCceeeeeeceeecCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCCCCC
Confidence            8999999999863211012478999988764     68999999999999984    46899999999999963  2333


Q ss_pred             ccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCChhHHHHH--HHHHhhCCCCCceEEEeecCCCCCC
Q 022859          196 MHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVF--LHMLGNCSTKIKIKFLRYEQSSQCK  273 (291)
Q Consensus       196 ~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~i~~~--l~~~~~~~~~~~~~ll~Y~~S~~~~  273 (291)
                      .            .++||+++++.+.+ |++.+.++...+-...||.+...+.  +.+...++.+.+.....|+.+    
T Consensus       203 ~------------n~~wD~~Fld~L~~-d~e~L~~~~~~e~~~~aG~~g~Ei~~Wl~a~GAL~~~~~~~~~~Yy~P----  265 (420)
T PRK13367        203 N------------NPEWDAQFLDLLVN-DPERLTEMTLAEYATLGGMEGAEVIMWLIMRGALSANVECLHRDYYLP----  265 (420)
T ss_pred             C------------CHHHHHHHHHHHHh-CHHHHHcCCHHHHHHHcCCchHHHHHHHHHHhhhccCCeeeeeeeeec----
Confidence            2            26899999999997 9999998877667789997776554  333344432222223455554    


Q ss_pred             CCCCCeeEeeEEEEE
Q 022859          274 TKRDSSVSYASAAAK  288 (291)
Q Consensus       274 ~~~~~~VgYas~~~~  288 (291)
                          +.+||+.+.|.
T Consensus       266 ----s~tG~~~~~~e  276 (420)
T PRK13367        266 ----SMTGIATLILE  276 (420)
T ss_pred             ----chhceEEEEEe
Confidence                56889988875

>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms

Probab=99.79  E-value=6.1e-20  Score=166.94  Aligned_cols=195  Identities=21%  Similarity=0.202  Sum_probs=132.3

Q ss_pred             cCCCCCCEEEEECCCCCCCC----C-ceeEeCCC------ccc-------cCCCCCCCcHHHHHHHHhcC---Cceeccc
Q 022859           64 IDPTSISRVFLLGPSHHYYT----P-KCALSTAT------VYK-------TPIGDLPLDLEVIEELKATG---KFELMDI  122 (291)
Q Consensus        64 l~~~~~~~VvIlGp~H~~~~----~-~~~~~~~~------~~~-------TPlG~~~vD~~~~~~L~~~~---~~~~~d~  122 (291)
                      |...+||+|||+||+|...+    . .+++....      ++.       .+-..++.|.+++++|.+..   ++.....
T Consensus        37 l~~~~pd~ivvis~h~~~~f~~~~~p~~~v~~~~~~~~~~d~~gfp~~~~~~~~~~~g~~~la~~i~~~l~~~g~~~~~~  116 (272)
T PF02900_consen   37 LREAKPDVIVVISPHWFTNFFEDNMPAFAVGSGEEPEGIYDFYGFPPELYEIKYPAPGDPELAERIAEHLRKAGFDVAAS  116 (272)
T ss_dssp             CHSTS-SEEEEEEEEECCS--TTCEECBEEE-SSEE-B-BS-----SSSBSSS--EEB-HHHHHHHHHHHHHTTS-EEEC
T ss_pred             HHHcCCCEEEEEeCCcchhhcccCCccEEEecCCCcccccccccccccccccCCCCCCCHHHHHHHHHHHHhcCCCEEec
Confidence            34568999999999888732    1 23343322      222       23345889999999997643   4442224


Q ss_pred             ccCccccccccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCCCCCCC
Q 022859          123 CVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWGSRFNY  195 (291)
Q Consensus       123 ~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g~~~g~  195 (291)
                      .....||++-|+|-||   +|+.++++|||.++.     .+.+++.+||++|+++++  ++|++||+|+|+||.....+.
T Consensus       117 ~~~~lDHG~~vPL~~l---~p~~~~Pvv~is~~~~~~p~~~~~~~~~lG~aL~~~~~~~~~rv~vi~SG~lsH~l~~~~~  193 (272)
T PF02900_consen  117 PERGLDHGVWVPLYFL---FPDADIPVVPISINSFAPPSPSPERHYRLGRALRKARESSDERVAVIASGGLSHNLRDPRP  193 (272)
T ss_dssp             SS--B-HHHHHHHHHH---CTT-SSEEEEEEEETSSS-TS-HHHHHHHHHHHHHHHHTSGGCEEEEEEE-SS--TTSTTT
T ss_pred             cCcCCccccceeeeec---ccccCcceeeeEeecccccCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCcccCCCcccc
Confidence            5678999999988886   444589999999975     688999999999999986  679999999999999864332


Q ss_pred             ccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc-C----CCcCChhHHHHHHHHHhhCCCCCceEEEeecCC
Q 022859          196 MHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY-D----NTICGRHPISVFLHMLGNCSTKIKIKFLRYEQS  269 (291)
Q Consensus       196 ~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~-~----~~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~S  269 (291)
                      ..+..      ..+++||+++++.|.++|.++++++..+. .    +..|+..|+.+++++++..+  .+.+++.|+..
T Consensus       194 ~~~~~------~~~~~fD~~i~~~l~~gd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GA~~~~~--~~~~~~~y~~~  264 (272)
T PF02900_consen  194 GGYDP------PWAEEFDEWILDALESGDLEALLDLDDEEPEAAAAHPEEHFRPWLVAAGAAGGAE--IKAEVLSYEPP  264 (272)
T ss_dssp             TS---------CHHHHHHHHHHCCCCH-HHHTCTTGGHCCHCHHHHGCCCCCHHHHHHHHTS-SEC--SCEEEEECCCE
T ss_pred             cchhh------HhHHHHHHHHHHHHHcCChHHHhhcChhhHHHHhCCChhHHHHHHHHHHhcCCCc--cceeeEEEeCc
Confidence            21110      26789999999999999999988876533 1    23999999999999998733  47899999986

Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.

>PRK13373 putative dioxygenase; Provisional

Probab=99.78  E-value=2.8e-18  Score=157.32  Aligned_cols=199  Identities=14%  Similarity=0.154  Sum_probs=139.8

Q ss_pred             CCCCCEEEEECCCCCCCCC-----ceeEeCC----Cccc--------cCCCCCCCcHHHHHHHHhcC---CceecccccC
Q 022859           66 PTSISRVFLLGPSHHYYTP-----KCALSTA----TVYK--------TPIGDLPLDLEVIEELKATG---KFELMDICVD  125 (291)
Q Consensus        66 ~~~~~~VvIlGp~H~~~~~-----~~~~~~~----~~~~--------TPlG~~~vD~~~~~~L~~~~---~~~~~d~~~~  125 (291)
                      +.+||.|||+|++|+..|.     .+++-..    +.|+        ++.|.++++.+++++|++..   +|+..-....
T Consensus        44 e~kPDVvVv~~nDH~~~Ff~d~mP~F~IG~a~~~~g~~~~~g~~~~~~~~~~~~g~~elA~~l~~~l~~~gfDva~s~~m  123 (344)
T PRK13373         44 AARPDVIIAFLDDHFENHFRSLMPTVGIGVADSHPGPATQWLEALRLTRQERFGGAPEIAERLLRSLVADGYDVARMGEI  123 (344)
T ss_pred             HhCCCEEEEEccchhhhhccccCCceEEEecccccCCccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeeece
Confidence            5789999999999997652     3454322    2333        66788999999999998865   4433222345


Q ss_pred             ccccccccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCCCCCCc
Q 022859          126 EAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGSRFNYM  196 (291)
Q Consensus       126 ~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~~~g~~  196 (291)
                      ..+|++.++|-||   +|+...+||||.+|.     .+.++|.+||++|+++++    ++||+||+|+.|||+.+-.+..
T Consensus       124 ~vDHg~~vPl~~l---~~~~~~pvVPV~vN~~~~P~p~~~R~~~lG~ai~~ai~~~~~d~rV~~~~sGgLSH~p~~~~~~  200 (344)
T PRK13373        124 EYGNNLMVPWKLM---APRSAPAIIPVFTNVFSPPVMPYRRAYAFGAALRNAAEALDADLRVAFMATGGMSHWPPFWNDS  200 (344)
T ss_pred             eCCcceeeeHHHh---CCCCCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCcccCCCcccccC
Confidence            7799998887764   544456899999998     356899999999999996    4799999999999984311110


Q ss_pred             -c--------------CC--------------------------ccccchh-HHHHHHHHHHHHHHHcCChHHHHHHHHh
Q 022859          197 -H--------------YD--------------------------KKHGVIH-KSIEALDKMGMDIIETGDPDAFKKYLLE  234 (291)
Q Consensus       197 -p--------------~~--------------------------~~~~~~~-~~~~~~D~~~i~~i~~~d~~~~~~~~~~  234 (291)
                       |              .|                          .+....+ ..+++||+++|+.+.++|.+.+.++..+
T Consensus       201 ~p~~~~~l~~~~~~q~~G~~~~~r~~~~~r~~~~~~i~~~~r~~~~~~~~~~~iN~ewD~~fLd~l~~gD~e~L~~~t~~  280 (344)
T PRK13373        201 SPEADAFLARMKAFQTHGKSVLEKDPHLLRDLAAYEIEMAERNQWPLNSPHPLVNEAWDRQMLDALARGDVEFLCGLQYE  280 (344)
T ss_pred             chhhhhhhhccccccccCCCchhhhhhhhhhhhhhhhhHHHHhhccccccccccCHHHHHHHHHHHHcCCHHHHHcCCHH
Confidence             0              00                          0001111 2677999999999999999999887665


Q ss_pred             cCCCcCChhHHHHH--HHHHhhCCCCCceEEEeecC
Q 022859          235 YDNTICGRHPISVF--LHMLGNCSTKIKIKFLRYEQ  268 (291)
Q Consensus       235 ~~~~~CG~~~i~~~--l~~~~~~~~~~~~~ll~Y~~  268 (291)
                      .-...-|.+...+.  +.+...++. .+.+++.|+-
T Consensus       281 e~~~~~G~gg~Ei~~Wiaa~gAlg~-~~~~~~~Yep  315 (344)
T PRK13373        281 DVKRDGGHGGQEIINWIELMGAMKG-APATLLEYEA  315 (344)
T ss_pred             HHHHHcCcccHHHHHHHHHHHhccC-CCcceEEEEE
Confidence            54455666554443  455555554 4678888875

>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate

Probab=99.78  E-value=6.1e-18  Score=153.97  Aligned_cols=190  Identities=13%  Similarity=0.122  Sum_probs=134.2

Q ss_pred             CCCCCEEEEECCCCCCCCC-----ceeEeCCCccccC---CC-----CCCCcHHHHHHHHhcC---CceecccccCcccc
Q 022859           66 PTSISRVFLLGPSHHYYTP-----KCALSTATVYKTP---IG-----DLPLDLEVIEELKATG---KFELMDICVDEAEH  129 (291)
Q Consensus        66 ~~~~~~VvIlGp~H~~~~~-----~~~~~~~~~~~TP---lG-----~~~vD~~~~~~L~~~~---~~~~~d~~~~~~EH  129 (291)
                      +.+||+|||+|++|...+.     .+++.....+..-   +|     .++.|++++++|.+..   ++..........||
T Consensus        46 ~~~pD~vVvi~~dH~~~f~~~~~P~f~i~~~~~~~~~~~~~g~~~~~~~~g~~~LA~~i~~~~~~~g~~~~~~~~~~lDH  125 (277)
T cd07364          46 KNKPDVAIIVYNDHASAFDLDIIPTFAIGTAEEFQPADEGYGPRPVPDVQGHPDLAWHIAQSLILDDFDMTIVNEMDVDH  125 (277)
T ss_pred             HhCCCEEEEEcCchHHhhcccCCCceEEeeccccccCccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCc
Confidence            5789999999999987653     3565544433311   12     5889999999998753   34332222357899


Q ss_pred             ccccchHHHHHHhcCCCeeEEEEEeCCC-----CHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCCCCCCccCCc
Q 022859          130 SMEMHLPYLAKVFEGHLIKIVPILVGAV-----NAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGSRFNYMHYDK  200 (291)
Q Consensus       130 slEvqlPfL~~~~~~~~~~IVPi~vg~~-----~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~~~g~~p~~~  200 (291)
                      +.-|+|.||..-....+++||||.++..     +.+++.+||++|+++++    ++|++||+|+|+||......   ++ 
T Consensus       126 G~~vPL~~l~p~~~~~p~pVV~vsvn~~~~p~~~~~~~~~lG~al~~~i~~~~rd~rV~iIaSG~lSH~L~~~~---~g-  201 (277)
T cd07364         126 GLTVPLSIMYGQPEAWPCKVIPLCVNVVQYPQPTGKRCFALGKAIRRAVESYDEDLKVAIWGTGGMSHQLQGER---AG-  201 (277)
T ss_pred             chhhhHHHhCCccccCCCCeEEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCC---cc-
Confidence            9999999975421012478999988764     67899999999999875    46799999999999964321   11 


Q ss_pred             cccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCChhHH--HHHHHHHhhCCCCCceEEEeecC
Q 022859          201 KHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICGRHPI--SVFLHMLGNCSTKIKIKFLRYEQ  268 (291)
Q Consensus       201 ~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG~~~i--~~~l~~~~~~~~~~~~~ll~Y~~  268 (291)
                            ..+++||+++++.+.+ |.+.+.++..+.   +..-||...+  .++++++....  .+.....|..
T Consensus       202 ------~~~~eFD~~i~~~l~~-d~~~l~~~~~~~~~~~ag~~g~e~~~wi~~~GAl~~~~--~~~~~~~~~p  265 (277)
T cd07364         202 ------LINKEFDNRFLDKLIS-DPEGLAKMPHIEYLREAGSEGIELVMWLIMRGALDEQV--RELHRFYHVP  265 (277)
T ss_pred             ------CchHHHHHHHHHHHHh-CHHHHHcCCchHHHHHcCccchhHHHHHHHHhhhccCC--eEEEEeeeec
Confidence                  1268999999999998 999998876422   4566888877  66777776532  2444455443

Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.

>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine

Probab=99.77  E-value=1.6e-17  Score=149.75  Aligned_cols=189  Identities=16%  Similarity=0.091  Sum_probs=133.8

Q ss_pred             HHHHhcCC--CCCCEEEEECCCCCCCCCceeEeCCCc-----cccCC------CCCCCcHHHHHHHHhcC---Cceeccc
Q 022859           59 YAFGNIDP--TSISRVFLLGPSHHYYTPKCALSTATV-----YKTPI------GDLPLDLEVIEELKATG---KFELMDI  122 (291)
Q Consensus        59 ~ay~~l~~--~~~~~VvIlGp~H~~~~~~~~~~~~~~-----~~TPl------G~~~vD~~~~~~L~~~~---~~~~~d~  122 (291)
                      .+++.+.+  .+||+|||++|+|......+.+.....     +.-|-      =+.+.|.+++++|.+..   ++.....
T Consensus        21 ~~l~~~~~~l~~p~~IiviSaHw~~~~~~i~~~~~~~~~~df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~gi~~~~~  100 (253)
T cd07363          21 AFLRELGKELPKPKAILVISAHWETRGPTVTASARPETIYDFYGFPPELYEIQYPAPGSPELAERVAELLKAAGIPARLD  100 (253)
T ss_pred             HHHHHHHHhcCCCCEEEEEcCCcccCCCeEEecCCCCceeCCCCCCHHHeeccCCCCCCHHHHHHHHHHHHhcCCCcccc
Confidence            66666642  289999999997766644444432211     12121      14688999999998754   3322222


Q ss_pred             ccCccccccccchHHHHHHhcCCCeeEEEEEeCCC-CHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCCCCCCCCccCCcc
Q 022859          123 CVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAV-NAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKK  201 (291)
Q Consensus       123 ~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~-~~~~~~~l~~~L~~~~~~~~~liv~SsDlsH~g~~~g~~p~~~~  201 (291)
                      .....||++-|+|-|+   +|+.+++||||.++.. +.+++.+||++|+++. +++++||+|+|+||.....+....   
T Consensus       101 ~~~~lDHG~~vPL~~~---~p~~~iPvV~isi~~~~~~~~~~~lG~aL~~l~-~~~v~ii~SG~lsH~l~~~~~~~~---  173 (253)
T cd07363         101 PERGLDHGAWVPLKLM---YPDADIPVVQLSLPASLDPAEHYALGRALAPLR-DEGVLIIGSGSSVHNLRALRWGGP---  173 (253)
T ss_pred             CCcCCcccHHHHHHHH---cCCCCCcEEEEEecCCCCHHHHHHHHHHHHhhh-hCCEEEEecCcceechhhhccccC---
Confidence            2466899999999885   4555899999999876 8899999999999865 569999999999999853222100   


Q ss_pred             ccchhHHHHHHHHHHHHHHHcCChHHHHHHHH------hcCCCcCChhHHHHHHHHHhhC
Q 022859          202 HGVIHKSIEALDKMGMDIIETGDPDAFKKYLL------EYDNTICGRHPISVFLHMLGNC  255 (291)
Q Consensus       202 ~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~------~~~~~~CG~~~i~~~l~~~~~~  255 (291)
                       ......+++||+++++.|.++|.++++....      +-+.+.|+..|+.+++++++..
T Consensus       174 -~~~~~~~~~Fd~~i~~~l~~~d~~~l~~~~~~~~~~~~ahp~~~h~~pll~~lGa~~~~  232 (253)
T cd07363         174 -APPPPWALEFDDWLKDALTAGDLDALLDYWEKAPHARRAHPTEEHLLPLLVALGAAGGD  232 (253)
T ss_pred             -CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHhCccHHHcCCChHHHHHHHHHhcCCCCC
Confidence             0012567999999999999999999664322      1234669999999999887653

This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca

>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional

Probab=99.67  E-value=1.3e-15  Score=144.59  Aligned_cols=169  Identities=17%  Similarity=0.202  Sum_probs=125.8

Q ss_pred             CCCCCCEEEEECCCCCCCC-----CceeEeCCCccc-cC--CCCCCC-----cHHHHHHHHhcC---CceecccccCccc
Q 022859           65 DPTSISRVFLLGPSHHYYT-----PKCALSTATVYK-TP--IGDLPL-----DLEVIEELKATG---KFELMDICVDEAE  128 (291)
Q Consensus        65 ~~~~~~~VvIlGp~H~~~~-----~~~~~~~~~~~~-TP--lG~~~v-----D~~~~~~L~~~~---~~~~~d~~~~~~E  128 (291)
                      .+.+||.|||+|++|...|     +.+++-....+. .+  .|.+++     +++++++|++..   ++..........|
T Consensus       192 ~~~~PDVvVi~~nDH~~~Ff~d~mP~FaIG~~~~~~p~d~g~G~~~v~~~pG~peLA~~I~~~L~~~GfD~a~~~erglD  271 (444)
T PRK13372        192 KEHLPDVIILVYNDHATAFDLEIIPTFAIGTAAEFPPADEGWGPRPVPDVIGHPELAAHIAQSVIQDDFDLTIVNEMDVD  271 (444)
T ss_pred             HHhCCCEEEEEccchhhhcCcccCCCeEEEEccccCCCcccCCCCCCCCCCCCHHHHHHHHHHHHhcCCChhhccCCCCC
Confidence            4578999999999999865     235554333322 11  455555     999999998754   4433333456789


Q ss_pred             cccccchHHHHHHhcCC---CeeEEEEEeCCC-----CHHHHHHHHHHHHHhhC----C-CCeEEEEeCCCCCCCCCCCC
Q 022859          129 HSMEMHLPYLAKVFEGH---LIKIVPILVGAV-----NAENEAMYGRLFAKYVD----D-PSNFFSVSSDFCHWGSRFNY  195 (291)
Q Consensus       129 HslEvqlPfL~~~~~~~---~~~IVPi~vg~~-----~~~~~~~l~~~L~~~~~----~-~~~liv~SsDlsH~g~~~g~  195 (291)
                      |++-|+|-+   ++|+.   ++|||||.|+..     +.++|.+||++|+++.+    | ++|+||+|+.+||+...   
T Consensus       272 HG~~vPL~l---m~P~ad~~~IPVVPvsvN~~~~Plps~~R~~~LG~AL~~lres~~~D~erVlIIGSGGLSHnL~~---  345 (444)
T PRK13372        272 HGLTVPLSL---MCGDPEAWPCPVIPFAVNVVQYPVPSGRRCYELGQAIRRAIDKWDADPLNVQIWGTGGMSHQLQG---  345 (444)
T ss_pred             chhhhhHHH---hCCcccCCCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHhhcccccCCEEEEecCcccCCCCC---
Confidence            999999887   45532   489999999886     88999999999999987    2 68999999999999531   


Q ss_pred             ccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCChhHHHH
Q 022859          196 MHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISV  247 (291)
Q Consensus       196 ~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~i~~  247 (291)
                       +   ...   ..+++||+++++.|.+ |++.+.++........||.+..-+
T Consensus       346 -~---~~g---~in~eFD~~~ld~L~~-D~e~L~~~~~~~~~~~aG~~g~El  389 (444)
T PRK13372        346 -P---RAG---LINEEFDNAFLDHLIA-DPEAAAEIPHIDYVDEAGSEGIEL  389 (444)
T ss_pred             -C---CCc---cchHHHHHHHHHHHHh-CHHHHHcCcccHHHHHcCCchHHH
Confidence             1   111   3568999999999998 999988876655667899875443

>COG3885 Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=2e-14  Score=123.95  Aligned_cols=209  Identities=16%  Similarity=0.210  Sum_probs=154.4

Q ss_pred             eeeecCCchh-----chHHHHHHHHHhcCC-C-CCCEEEEECCCCCCCCCceeEeCCCccccC--C--------CCCCCc
Q 022859           42 GVIAPHAGYS-----YSGRAAAYAFGNIDP-T-SISRVFLLGPSHHYYTPKCALSTATVYKTP--I--------GDLPLD  104 (291)
Q Consensus        42 a~I~PHag~~-----ysg~~aa~ay~~l~~-~-~~~~VvIlGp~H~~~~~~~~~~~~~~~~TP--l--------G~~~vD  104 (291)
                      -.|.||-+=.     ---+..-.|++.+.. . .++|+|||+|+-....+-+++- ..++-+|  +        +...+|
T Consensus         5 iyv~PHgdEii~~~~~e~~~l~kA~k~i~~~~~~seT~VvIsPHgi~ldd~iavi-ys~~l~g~~~~~k~~~i~~ey~~d   83 (261)
T COG3885           5 IYVIPHGDEIIDPEDEESRKLNKAIKEIASDDKGSETYVVISPHGIRLDDYIAVI-YSEYLSGLPYRTKHHPIRKEYKND   83 (261)
T ss_pred             EEeccCCccccCCchhHHHHHHHHHHHHHcccCCCceEEEEcCCceeeechhhHH-hHHhhcccccccccCcchhhhhcc
Confidence            4577885322     223444667777753 2 3899999999443333334432 1223332  2        458899


Q ss_pred             HHHHHHHHhcC--Ccee----cc-----cccCccccccccchHHHHHHhcCCCeeEEEEEeCCCCHHHHHHHHHHHHHhh
Q 022859          105 LEVIEELKATG--KFEL----MD-----ICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYV  173 (291)
Q Consensus       105 ~~~~~~L~~~~--~~~~----~d-----~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~~~~~~~~l~~~L~~~~  173 (291)
                      ++++++|.+..  .+-.    ++     .....++|+--++|.||+.      -+||-+.-..++.+...++|..|.+++
T Consensus        84 reLa~~I~~~a~g~~p~v~it~~~lkg~~s~~~Ld~G~~IPL~Flk~------rrIV~lt~arl~~~~l~~Fg~~l~~~l  157 (261)
T COG3885          84 RELADKIYEEAKGQFPLVCITFSILKGNYSRCPLDWGSLIPLYFLKR------RRIVLLTPARLSREILVKFGDNLGKAL  157 (261)
T ss_pred             HHHHHHHHHHhccCCceEEEechhhcCcCCccccccccccchhhccc------eeEEEechhhccHHHHHHHHHHHHHHH
Confidence            99999997743  1111    11     2336789999999999743      479999988889999999999999999


Q ss_pred             C--CCCeEEEEeCCCCCCCC---CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc--CCCcCChhHHH
Q 022859          174 D--DPSNFFSVSSDFCHWGS---RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY--DNTICGRHPIS  246 (291)
Q Consensus       174 ~--~~~~liv~SsDlsH~g~---~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~--~~~~CG~~~i~  246 (291)
                      +  ++++.+|+|.|.+|-..   +|||+++          .++.|+.+++.+.++|.+++++...+.  ++.-|++..+.
T Consensus       158 e~~~~ki~lIiSaD~aHth~edGPYGYs~~----------se~yDk~iv~~lks~n~e~l~~iD~~~I~~Akpdsy~sll  227 (261)
T COG3885         158 EEYERKISLIISADHAHTHDEDGPYGYSEE----------SEEYDKIIVDSLKSGNFEALLSIDDEVIAEAKPDSYWSLL  227 (261)
T ss_pred             HHhhcceEEEEecccccccCCCCCCCCChh----------HHHHHHHHHHHhcccCHHHHHhccHHHHHhcCCchHHHHH
Confidence            7  47999999999999985   7888754          479999999999999999999987766  67889999999


Q ss_pred             HHHHHHhhCCCCCceEEEeecCC
Q 022859          247 VFLHMLGNCSTKIKIKFLRYEQS  269 (291)
Q Consensus       247 ~~l~~~~~~~~~~~~~ll~Y~~S  269 (291)
                      ++++.++....  |+++..|+-.
T Consensus       228 i~lgiLe~~~~--K~~~~~y~~~  248 (261)
T COG3885         228 ILLGILEESPR--KMSLVEYYVP  248 (261)
T ss_pred             HHHHHHhcccc--cceEEEEecc
Confidence            99999998764  6776666543

>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]

Probab=99.34  E-value=1.2e-10  Score=103.69  Aligned_cols=210  Identities=13%  Similarity=0.095  Sum_probs=147.1

Q ss_pred             HHHHHhcC----CCCCCEEEEECCCCCCCCCceeEeC---CCccccCCCC----------CCCcHHHHHHHHhcCC---c
Q 022859           58 AYAFGNID----PTSISRVFLLGPSHHYYTPKCALST---ATVYKTPIGD----------LPLDLEVIEELKATGK---F  117 (291)
Q Consensus        58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~~~---~~~~~TPlG~----------~~vD~~~~~~L~~~~~---~  117 (291)
                      -++.+.|.    +.+||+||+++| |+.......++.   .+.|.+=.|-          -+-+++++++|.+...   +
T Consensus        29 ~~~l~~lG~~~~e~rp~tIiV~Sa-Hw~t~~~~~v~~~e~~~~i~DfygFP~~ly~~~Y~a~G~peLa~~i~~~l~~~~v  107 (268)
T COG3384          29 TRGLRELGRELPELRPDTIIVFSA-HWETRGAYHVTASEHPETIHDFYGFPDELYDVKYPAPGSPELAQRIVELLAKLGV  107 (268)
T ss_pred             HHHHHHHHHhhhhcCCCEEEEEec-eEEecCceeEEcccCcceeeccCCCCHHHHhccCCCCCCHHHHHHHHHHhcccCc
Confidence            34444443    347999999999 776544444433   3444444443          6778899988877542   2


Q ss_pred             eecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCC-CHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCCCCCCCCc
Q 022859          118 ELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAV-NAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYM  196 (291)
Q Consensus       118 ~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~-~~~~~~~l~~~L~~~~~~~~~liv~SsDlsH~g~~~g~~  196 (291)
                      .. +...-..||+.=++|   ++.||+.++|||.|.+... +.+..+++|++|+++.++ .++||+|+.++|....+.+.
T Consensus       108 ~a-~~~~~gLDHGtwvpL---~~M~PdadipVV~iSi~~~~~~~~h~~lG~al~~lree-~vlilaSGs~~H~l~~~~~~  182 (268)
T COG3384         108 PA-DAPSWGLDHGTWVPL---RYMFPDADIPVVQISIDCTLSPADHYELGRALRKLREE-GVLILASGSLVHNLRLLKWA  182 (268)
T ss_pred             cc-cCCccCCCccceeee---hhhCCccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhC-CEEEEecCcceeehhhhhhc
Confidence            21 224567899997775   4578888999999999886 688889999999998764 69999999999998765554


Q ss_pred             cCCccccchhHHHHHHHHHHHHHHH--cCChHHHHHHHHhcCC------CcCChhHHHHHHHHHhhCCCCCceEEEeecC
Q 022859          197 HYDKKHGVIHKSIEALDKMGMDIIE--TGDPDAFKKYLLEYDN------TICGRHPISVFLHMLGNCSTKIKIKFLRYEQ  268 (291)
Q Consensus       197 p~~~~~~~~~~~~~~~D~~~i~~i~--~~d~~~~~~~~~~~~~------~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~  268 (291)
                      ..+     .+..+++||..+.+.|.  .+|.+.|.++.+....      +.=...|+..+|++... +  .+.+++-+..
T Consensus       183 ~~~-----~~~~a~~F~~~~~~~v~~~~~d~~~~~~~~~~~p~~~~~~~~~eH~~pL~~~lG~~~~-~--~~~ei~~d~~  254 (268)
T COG3384         183 GDG-----PYPWAREFDEWMKKNVVLWGGDFAPLCNYLPLYPDALIAEPGEEHLLPLLYALGAWDG-D--EKVEIVTDLF  254 (268)
T ss_pred             CCC-----CChhHHHHHHHHHHHHHHhccchHHHhHhhhhchHhhhCCCCccchHHHHHHhhccCC-C--CCeeEEeccc
Confidence            221     34788999999999996  3588999998776632      34445566666665544 1  3677776444


Q ss_pred             CCCCCCCCCCeeEeeEEEEE
Q 022859          269 SSQCKTKRDSSVSYASAAAK  288 (291)
Q Consensus       269 S~~~~~~~~~~VgYas~~~~  288 (291)
                      -       ..+||+.++.|.
T Consensus       255 ~-------~~s~sm~~~~F~  267 (268)
T COG3384         255 E-------SGSLSMLNAQFP  267 (268)
T ss_pred             c-------cccceeEEEecC
Confidence            2       256888887764

>PRK10628 LigB family dioxygenase; Provisional

Probab=98.98  E-value=1.4e-07  Score=84.46  Aligned_cols=145  Identities=14%  Similarity=0.046  Sum_probs=102.5

Q ss_pred             CCCcHHHHHHHHhcC---CceecccccCccccccccchHHHHHHhcCCCeeEEEEEeCC-CCHHHHHHHHHHHHHhhCCC
Q 022859          101 LPLDLEVIEELKATG---KFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-VNAENEAMYGRLFAKYVDDP  176 (291)
Q Consensus       101 ~~vD~~~~~~L~~~~---~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-~~~~~~~~l~~~L~~~~~~~  176 (291)
                      .+-++++++++.+..   +. ..++.....||++=|+|-.   .+|+.++|||.|.+.. .+.+...++|++|+++ +++
T Consensus        66 a~G~p~LA~~i~~ll~~~~~-~~~~~~rGlDHG~WvpL~~---m~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~L-R~~  140 (246)
T PRK10628         66 APGSPALAQRLVELLAPVPV-TLDKEAWGFDHGSWGVLIK---MYPDADIPMVQLSIDSTKPAAWHFEMGRKLAAL-RDE  140 (246)
T ss_pred             CCCCHHHHHHHHHHhhhcCc-ccCCcccCcccchhhhhhh---hCCCCCCCeEEeecCCCCCHHHHHHHHHHHHhh-ccC
Confidence            566777777776643   33 2233347789999887654   7888899999999955 5777889999999986 667


Q ss_pred             CeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcC-C--hHHHHHHHHhcCC-----CcCChhHHHHH
Q 022859          177 SNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETG-D--PDAFKKYLLEYDN-----TICGRHPISVF  248 (291)
Q Consensus       177 ~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~-d--~~~~~~~~~~~~~-----~~CG~~~i~~~  248 (291)
                      .++||+|+..+|=+..+.+...    ......+.+||..+.+.|.+. |  .+.++++.+..+.     +.-=.-|+.++
T Consensus       141 gvLIigSG~~~HNL~~~~~~~~----~~~~~wa~~F~~wl~~~l~~~~~~r~~~L~~~~~~p~a~~ahPt~EH~lPL~~a  216 (246)
T PRK10628        141 GIMLVASGNVVHNLRTVKWHGD----SSPYPWAESFNQFVKANLTWQGPVEQHPLVNYLQHEGGALSNPTPEHYLPLLYV  216 (246)
T ss_pred             CEEEEecCccccchhhhcccCC----CCCchHHHHHHHHHHHHHhcCccchHHHHHHHHhCcChhhcCCChHHHHHHHHH
Confidence            8999999999999865544211    112356789999999999954 5  8888887443322     33445566666


Q ss_pred             HHHHhh
Q 022859          249 LHMLGN  254 (291)
Q Consensus       249 l~~~~~  254 (291)
                      +++++.
T Consensus       217 lGAa~~  222 (246)
T PRK10628        217 LGAWDG  222 (246)
T ss_pred             hcCCCC
Confidence            666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	291
3bd0_A	293	Crystal Structure Of Memo, Form Ii Length = 293		1e-75
3bcz_A	293	Crystal Structure Of Memo Length = 293		2e-72

>pdb|3BD0|A Chain A, Crystal Structure Of Memo, Form Ii Length = 293

Iteration: 1
 Score =  280 bits (715), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 136/278 (48%), Positives = 175/278 (62%), Gaps = 6/278 (2%)
Query: 5   RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHXXXXXXXXXXXXXFGNI 64
           R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPH             +  +
Sbjct: 4   REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 62
Query: 65  DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
           DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +  
Sbjct: 63  DPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQT 122
Query: 125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
           DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F V
Sbjct: 123 DEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVV 182
Query: 183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
           SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGR
Sbjct: 183 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGR 242
Query: 243 HPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKTKRD 277
           HPI V L+    L      +   FL Y QSSQC+  +D
Sbjct: 243 HPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQD 280

>pdb|3BCZ|A Chain A, Crystal Structure Of Memo Length = 293

Iteration: 1
 Score =  268 bits (685), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 132/278 (47%), Positives = 170/278 (61%), Gaps = 6/278 (2%)
Query: 5   RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHXXXXXXXXXXXXXFGNI 64
           R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPH             +  +
Sbjct: 4   REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 62
Query: 65  DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
           DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE   +  
Sbjct: 63  DPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGXFERXSLQT 122
Query: 125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
           DE EHS+E HLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F V
Sbjct: 123 DEDEHSIEXHLPYTAKAXESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVV 182
Query: 183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
           SSDFCHWG RF Y +YD+  G I++SIE LDK G  IIE  DP +F  YL +Y NTICGR
Sbjct: 183 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKXGXSIIEQLDPVSFSNYLKKYHNTICGR 242
Query: 243 HPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKTKRD 277
           HPI V L+    L          FL Y QSSQC+  +D
Sbjct: 243 HPIGVLLNAITELQKNGXNXSFSFLNYAQSSQCRNWQD 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
3bcz_A	293	Protein MEMO1; alpha/beta structure, peptide bindi	1e-111
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A Length = 293

 Score =  322 bits (827), Expect = e-111
 Identities = 152/292 (52%), Positives = 194/292 (66%), Gaps = 6/292 (2%)

Query: 3   KIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFG 62
             R ASHAGSWYT +  +L  +L+GWL +    K P  R +IAPHAGY+Y G  AA+A+ 
Sbjct: 2   VCREASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYK 60

Query: 63  NIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDI 122
            +DP+   R+F+LGPSHH    +CALS+  +Y+TP+ DL +D ++  EL  TG FE M +
Sbjct: 61  QVDPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSL 120

Query: 123 CVDEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFF 180
             DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F
Sbjct: 121 QTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLF 180

Query: 181 SVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTIC 240
            VSSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTIC
Sbjct: 181 VVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTIC 240

Query: 241 GRHPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKV 289
           GRHPI V L+    L      +   FL Y QSSQC+  +DSSVSYA+ A  V
Sbjct: 241 GRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQDSSVSYAAGALTV 292

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 21/161 (13%), Positives = 43/161 (26%), Gaps = 56/161 (34%)

Query: 104 DLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEA 163
            + +          E+  + +   +   +  LP              P  +         
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVL-------TTNPRRLS-------- 331

Query: 164 MYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETG 223
               + A+ + D             W   + +++ DK   +I  S+  L           
Sbjct: 332 ----IIAESIRD---------GLATW-DNWKHVNCDKLTTIIESSLNVL----------- 366

Query: 224 DPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTKIKIKFL 264
           +P  ++K    +D        +SVF       S  I    L
Sbjct: 367 EPAEYRKM---FDR-------LSVF-----PPSAHIPTILL 392

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
3bcz_A	293	Protein MEMO1; alpha/beta structure, peptide bindi	100.0
3vsj_A	271	2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU;	100.0
3vsj_B	312	2-amino-5-chlorophenol 1,6-dioxygenase beta subun;	99.97
1b4u_B	302	LIGA, LIGB, protocatechuate 4,5-dioxygenase; extra	99.95
2pw6_A	271	Uncharacterized protein YGID; JW3007, escherichia	99.66

>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A

Probab=100.00  E-value=4e-80  Score=566.00  Aligned_cols=286  Identities=52%  Similarity=0.927  Sum_probs=263.2

Q ss_pred             CCcccCccccccCCCHHHHHHHHHHHHHhcCCCCCCCcceeeecCCchhchHHHHHHHHHhcCCCCCCEEEEECCCCCCC
Q 022859            3 KIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYY   82 (291)
Q Consensus         3 ~~R~~~~AG~~YP~~~~~L~~~l~~~~~~~~~~~~~~~~a~I~PHag~~ysg~~aa~ay~~l~~~~~~~VvIlGp~H~~~   82 (291)
                      .+|+|+|||+|||+|+++|+++|+.||...+..+. .++|+|+|||||.|||++||++|+.|+..+|||||||||||+..
T Consensus         2 ~~R~~~~AG~~Yp~~~~~L~~~l~~~l~~~~~~~~-~~~~iI~PHAGy~ysG~~aa~ay~~l~~~~p~~VvilGP~H~~~   80 (293)
T 3bcz_A            2 VCREASHAGSWYTASGPQLNAQLEGWLSQVQSTKR-PARAIIAPHAGYTYCGSCAAHAYKQVDPSITRRIFILGPSHHVP   80 (293)
T ss_dssp             CEECCTTBTTTBCSCHHHHHHHHHHHHTTSCCCSC-SCSEEEECCSCHHHHHHHHHHHHTTCCTTTCCEEEEEEECSSSC
T ss_pred             CccCCccccCCCCCCHHHHHHHHHHHHhhCCCCCC-CceEEEECCCCccccHHHHHHHHHHhccCCCCEEEEECCCCCCC
Confidence            47999999999999999999999999976543232 37999999999999999999999999878899999999999999


Q ss_pred             CCceeEeCCCccccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchHHHHHHhcC--CCeeEEEEEeCCCCHH
Q 022859           83 TPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEG--HLIKIVPILVGAVNAE  160 (291)
Q Consensus        83 ~~~~~~~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlPfL~~~~~~--~~~~IVPi~vg~~~~~  160 (291)
                      +.++++++.+.|+||||++++|++++++|.+...+..+|...|..|||+||||||||+++++  ++++||||+||.++.+
T Consensus        81 ~~~~a~~~~~~~~TPlG~l~vD~el~~~L~~~~~~~~~d~~~~~~EHSlEv~LPfL~~~~~~~~~~~~IVPI~vg~~~~~  160 (293)
T 3bcz_A           81 LSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSES  160 (293)
T ss_dssp             CSSEEECSCSEECCSSCCEEBCHHHHHHHHHTSCEEECCHHHHHHCCTTGGGHHHHHHHTGGGTTSCEEEEEEECCCCHH
T ss_pred             CCceEEccCCceECCCccCCCCHHHHHHHHhcCCcccccccccchheEEEeeHHHHHHHhCCCCCCceEEEEEcCCCCHH
Confidence            99999999999999999999999999999998777777878899999999999999999852  3799999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcC
Q 022859          161 NEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTIC  240 (291)
Q Consensus       161 ~~~~l~~~L~~~~~~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~C  240 (291)
                      +++++|++|.+++++.+++||+||||||||+||||.|+..+.+++++.++++|+++|+.|+++|+++|++++.++++++|
T Consensus       161 ~~~~~g~~l~~~~~~~~~l~V~SsDlsH~g~~fgy~~~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~t~C  240 (293)
T 3bcz_A          161 KEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTIC  240 (293)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEEECCCCEEBGGGTBCCCCGGGCSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEeCCccCCCCCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCcCcC
Confidence            99999999999998889999999999999999999988655556789999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHhhCCC---CCceEEEeecCCCCCCCCCCCeeEeeEEEEEe
Q 022859          241 GRHPISVFLHMLGNCST---KIKIKFLRYEQSSQCKTKRDSSVSYASAAAKV  289 (291)
Q Consensus       241 G~~~i~~~l~~~~~~~~---~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~~  289 (291)
                      |.+||.++|.+++.++.   ..++++|+|++|++++++++++|||++++|.+
T Consensus       241 G~~pi~~~l~a~~~~~~~~~~~~~~~l~Y~~S~~~~~~~~~~VgYas~~~~~  292 (293)
T 3bcz_A          241 GRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQDSSVSYAAGALTV  292 (293)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCEEEEEEEEEESSCCCSTTCCEEEEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHcCcccccceEEEEEecCccCCCCCCCCEEEeeEEEEEe
Confidence            99999999999988751   14799999999999999999999999999875

>3vsj_A 2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_A 3vsi_A* 3vsg_A*

Probab=100.00  E-value=1.9e-32  Score=247.68  Aligned_cols=233  Identities=12%  Similarity=0.027  Sum_probs=176.1

Q ss_pred             ceeeecCCc--hh--ch--HHHHHHHHHhcC----CCCCCEEEEECCCCCCCCCceeE--------eCCCccccCCCCCC
Q 022859           41 RGVIAPHAG--YS--YS--GRAAAYAFGNID----PTSISRVFLLGPSHHYYTPKCAL--------STATVYKTPIGDLP  102 (291)
Q Consensus        41 ~a~I~PHag--~~--ys--g~~aa~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~--------~~~~~~~TPlG~~~  102 (291)
                      .++++||.-  -.  -.  -.-...+|+.+.    ..+||+|||+||+|......+++        .+..+|. +||+++
T Consensus         5 ~a~~~pH~P~~~l~pe~~~~~~~~~a~~~~~~~l~~~~Pd~ivvis~h~~~~~~~~~i~~~~~~~~~~~~~f~-~~g~~~   83 (271)
T 3vsj_A            5 SAFLVPGTPLPQLKPEVPSWGQLAAATERAGKALAASRPDVVLVYSTQWLAVLDQQWLTRPRSEGVHVDENWY-EFGDLA   83 (271)
T ss_dssp             EEEEECCCSHHHHCTTSHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEESSSEEEECCSEEEEEECCTTTG-GGCCEE
T ss_pred             EEEEcCCCCccCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccCcEEEeccCCCcccccCCch-hhcccc
Confidence            467777764  00  01  112234454443    35899999999988777666554        2356777 899865


Q ss_pred             ----CcHHHHHHHHhcC---Ccee--cccccCccccccccchHHHHHHhcCCCeeEEEEEeC-CCCHHHHHHHHHHHHHh
Q 022859          103 ----LDLEVIEELKATG---KFEL--MDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVG-AVNAENEAMYGRLFAKY  172 (291)
Q Consensus       103 ----vD~~~~~~L~~~~---~~~~--~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg-~~~~~~~~~l~~~L~~~  172 (291)
                          .|.+++++|.+..   ++..  .++..+..|||++|||+||+...+  ++|||||.++ ..+.+++.++|++|+++
T Consensus        84 y~~~gd~~la~~i~~~~~~~g~~~~~~~~~~~~lDHg~~vpl~~l~~~~~--~~pvv~i~~~~~~~~~~~~~lG~al~~~  161 (271)
T 3vsj_A           84 YDIRADTALAEACVTSSPLHGVHARGVNYDGFPIDTGTITACTLMGIGTD--AFPLVVGSNNLYHSGEITEKLAALAVDC  161 (271)
T ss_dssp             EEEEBCHHHHHHHHHHHHHTTCCEEEECCTTCCCCHHHHHHHHHHTCSSS--SSCEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred             ccCcCCHHHHHHHHHHHHHCCCcEEeecCCCCCcchhHHHHHHHHhccCC--CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence                9999999997743   3432  244578999999999999987642  5999999999 78999999999999998


Q ss_pred             hC--CCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCC---CcCChhHHHH
Q 022859          173 VD--DPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDN---TICGRHPISV  247 (291)
Q Consensus       173 ~~--~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~---~~CG~~~i~~  247 (291)
                      ++  +++++||+|||+||+..+.+..+  ..+....+.+++||+++++.|.++|.++|+++..+...   ..||..++.+
T Consensus       162 ~~~~~~~vlii~SGdlsH~l~~~~~~~--~~~~~~~~~a~~fD~~~~~~l~~~D~~~L~~~~~~~~~~a~g~~G~~~~~~  239 (271)
T 3vsj_A          162 AKDQNKRVAVVGVGGLSGSLFREEIDP--REDRIANEEDDKWNRRVLKLIEAGDVSALREAMPVYAKEARVDMGFKHLHW  239 (271)
T ss_dssp             HHHTTCCEEEEEECCSCCCCCSSCCCG--GGCCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred             HHHcCCCEEEEEECccccCCcccCCCC--CCCCCCCcchHHHHHHHHHHHHCCCHHHHHhcCHHHHHHhccCCcHHHHHH
Confidence            75  78999999999999974222110  00011126789999999999999999999998776533   5699999999


Q ss_pred             HHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEEE
Q 022859          248 FLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAK  288 (291)
Q Consensus       248 ~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~  288 (291)
                      ++++++..+  .++++++|++|        +.|||+.+.|.
T Consensus       240 l~gal~~~~--~~~~ll~Y~~p--------~gvGy~v~~~~  270 (271)
T 3vsj_A          240 ILGALKGKF--SGANVLGYGPS--------YGSGAAVIEFR  270 (271)
T ss_dssp             HHHHTTTCC--SEEEEEEEEEE--------TTEEEEEEEEE
T ss_pred             HHHhcCCCC--CCcceeeeecC--------cccceEEEEEe
Confidence            988877544  47999999998        88999999886

>3vsj_B 2-amino-5-chlorophenol 1,6-dioxygenase beta subun; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_B 3vsi_B* 3vsg_B*

Probab=99.97  E-value=7.3e-31  Score=241.65  Aligned_cols=220  Identities=11%  Similarity=0.063  Sum_probs=169.4

Q ss_pred             HHHHHHhcC----CCCCCEEEEECCCCCCCCCceeE-----------eCCCccccCCCCCCCcHHHHHHHHhcC---Cce
Q 022859           57 AAYAFGNID----PTSISRVFLLGPSHHYYTPKCAL-----------STATVYKTPIGDLPLDLEVIEELKATG---KFE  118 (291)
Q Consensus        57 aa~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~-----------~~~~~~~TPlG~~~vD~~~~~~L~~~~---~~~  118 (291)
                      ...+|+.+.    +.+||.|||++|+|...++.+.+           ..+..|.++-++++.|.+++++|.+..   ++.
T Consensus        37 ~~~~~~~~~~~l~~~~PdaIvviS~Hw~~~~~~~~~~~~~~~~~~~~~~f~~f~~~~y~~~gd~eLA~~i~~~l~~~g~~  116 (312)
T 3vsj_B           37 LRWAYERARERLDAMKPDVLLVHSPHWITSVGHHFLGVPELSGKSVDPIFPNVFRYDFSLNVDVELAEACAEEGRKAGLV  116 (312)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEEEEEEEESSSEEEECCSEEEEEEECSSCTTTCEEEEEEEBCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEEcCCCCccCCeEEeccCCCCccccccCCCccCcccCCCCCCHHHHHHHHHHHHHcCCc
Confidence            345666553    34899999999977665543332           113344456677999999999998743   443


Q ss_pred             e--cccccCccccccccchHHHHHHhcCCCeeEEEEEeC----CCCHH----HHHHHHHHHHHhhC--CCCeEEEEeCCC
Q 022859          119 L--MDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVG----AVNAE----NEAMYGRLFAKYVD--DPSNFFSVSSDF  186 (291)
Q Consensus       119 ~--~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg----~~~~~----~~~~l~~~L~~~~~--~~~~liv~SsDl  186 (291)
                      .  .++..+..|||++|||+||+   |+.++|||||.++    ..+.+    ++.+||++|+++++  +++++||+||||
T Consensus       117 ~~~~~~~~~~lDHG~~vpL~~l~---p~~~~pVVpis~~~~p~~~~~~~~~~~~~~lG~aL~~~~~~~d~~Vlii~SG~l  193 (312)
T 3vsj_B          117 TKMMRNPKFRVDYGTITTLHLIR---PQWDIPVVGISANNSPYYLNTKEGMSEMDVLGKATREAIRKTGRKAVLLASNTL  193 (312)
T ss_dssp             EEEECCTTCCCCHHHHHHHHHHC---TTCCSCEEEEEEESHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCS
T ss_pred             eeeccCccccCCcchHhHHHHhC---CCCCCCEEEEeecCCCCCCChhhhHHHHHHHHHHHHHHHHhcCCCEEEEEECcc
Confidence            2  23557899999999999998   4468999999998    47888    99999999999886  789999999999


Q ss_pred             CCCCCCCCCccCCc-c-ccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCC---CcCChhHHHHHHHHHhhCCCCCce
Q 022859          187 CHWGSRFNYMHYDK-K-HGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDN---TICGRHPISVFLHMLGNCSTKIKI  261 (291)
Q Consensus       187 sH~g~~~g~~p~~~-~-~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~---~~CG~~~i~~~l~~~~~~~~~~~~  261 (291)
                      ||+++.++...... . .....+.+++||+++++.|.++|.++|+++..++..   ++||..++.+|+.+++...  .++
T Consensus       194 sH~l~~~~~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~gD~~~L~~~~~e~~~~a~g~cG~~~~~~l~gAl~~~~--~~~  271 (312)
T 3vsj_B          194 SHWHFHEEPTIPEDMSKEYPATMAGYQWDIRMIELMRQGKTSEVFKLLPQFIDEAFAEVKSGAFTWMHAAMQYPE--LAA  271 (312)
T ss_dssp             CCCCCCSCCSSTTCGGGCCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTCGGGGSHHHHHHHHTTCCC--CCC
T ss_pred             cccCCcccccccccccccCCCCHHHHHHHHHHHHHHHcCCHHHHHhCCHHHHHHhccccCHHHHHHHHHHhcCCC--Ccc
Confidence            99997543311000 0 011237789999999999999999999999887643   8899999999988876633  468


Q ss_pred             EEEeecCCCCCCCCCCCeeEeeEEEEEe
Q 022859          262 KFLRYEQSSQCKTKRDSSVSYASAAAKV  289 (291)
Q Consensus       262 ~ll~Y~~S~~~~~~~~~~VgYas~~~~~  289 (291)
                      ++++|++|        ++|||+.+.|..
T Consensus       272 ~ll~Y~~s--------~gvGy~~~~~~~  291 (312)
T 3vsj_B          272 ELFGYGTV--------IGTGNAVMEWDL  291 (312)
T ss_dssp             EEEEEEEE--------TTEEEEEEEEEH
T ss_pred             eEEeeECC--------ccceEEEEEEEc
Confidence            99999998        889999999863

>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B

Probab=99.95  E-value=7e-28  Score=220.89  Aligned_cols=231  Identities=14%  Similarity=0.113  Sum_probs=169.2

Q ss_pred             cceeeecCCchhch--H---------HHHHHHHHhcC----C--CCCCEEEEECCCCCCCCCc-----eeEeCCCc---c
Q 022859           40 VRGVIAPHAGYSYS--G---------RAAAYAFGNID----P--TSISRVFLLGPSHHYYTPK-----CALSTATV---Y   94 (291)
Q Consensus        40 ~~a~I~PHag~~ys--g---------~~aa~ay~~l~----~--~~~~~VvIlGp~H~~~~~~-----~~~~~~~~---~   94 (291)
                      +.|+++||.--...  +         +-...+|+.+.    .  .+||+|||+||+|+..+..     +++.....   |
T Consensus         5 v~~~~~sH~P~i~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~~~Pd~Ivvis~~H~~~~~~~~~~~~~I~~~~~~~~~   84 (302)
T 1b4u_B            5 TTGITSSHIPALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDHASAFDMNIIPTFAIGCAETFKPA   84 (302)
T ss_dssp             EEEEEECCCHHHHHHHHHTCTTSTTTHHHHHHHHHHHHHHTSTTTSCSEEEEEECCCSSSCCTTEEESBEEECSSEECBC
T ss_pred             hEEeECCCCCcccCccccCCcchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCcccccccccCCceEEecCCCCccC
Confidence            34678888543221  0         13455666663    4  6899999999999977532     67766555   9


Q ss_pred             ccCCCCCCCc-----HHHHHHHHhcC---CceecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCCC-----HHH
Q 022859           95 KTPIGDLPLD-----LEVIEELKATG---KFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVN-----AEN  161 (291)
Q Consensus        95 ~TPlG~~~vD-----~~~~~~L~~~~---~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~~-----~~~  161 (291)
                      .+|+|.+++|     .+++++|.+..   ++.......+..|||++|||+||+....+..+|||||.++...     .++
T Consensus        85 d~~~G~~~~~~~~G~peLA~~i~~~l~~~g~~~~~~~~~~lDHG~~vpL~~l~p~~d~~~ipVVpisv~~~~~p~~~~~~  164 (302)
T 1b4u_B           85 DEGWGPRPVPDVKGHPDLAWHIAQSLILDEFDMTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVVTYPPPSGKR  164 (302)
T ss_dssp             BCSSSBCSSCCEECCHHHHHHHHHHHHHTTCCCEEESSCCBCHHHHHHHHHHHCSCSSCSSEEEEEEBCCSSSCCCCHHH
T ss_pred             cccCCCcCCCCCCCCHHHHHHHHHHHHhcCCCeeccCCcCCCceeeehHHHhcCcccCCcCcEEEEeecCCCCCCCCHHH
Confidence            9999999998     99999997753   3332211347899999999999886541001999999999754     688


Q ss_pred             HHHHHHHHHHhh----CCCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCC
Q 022859          162 EAMYGRLFAKYV----DDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDN  237 (291)
Q Consensus       162 ~~~l~~~L~~~~----~~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~  237 (291)
                      +.+||++|++++    ++++|+||+||||||+.+.-   +.+       ..+++||+++++.| ++|.++|+++..+...
T Consensus       165 ~~~lG~aL~~~~~~~~~d~~VlIIgSG~lSH~l~~~---~~g-------~~~~~fD~~~~~~l-~~d~~~L~~~~~~~~a  233 (302)
T 1b4u_B          165 CFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGP---RAG-------LINKEFDLNFIDKL-ISDPEELSKMPHIQYL  233 (302)
T ss_dssp             HHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSST---TTT-------BCCHHHHHHHHHHH-HHCHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCCCC---cCc-------cchHHHHHHHHHHH-ccCHHHHHhcccchHH
Confidence            999999999987    46789999999999997521   111       13489999999999 9999999888776667


Q ss_pred             CcCChhH--HHHHHHHHhhCCCCCceEEEeec--CCCCCCCCCCCeeEeeEEEEEec
Q 022859          238 TICGRHP--ISVFLHMLGNCSTKIKIKFLRYE--QSSQCKTKRDSSVSYASAAAKVD  290 (291)
Q Consensus       238 ~~CG~~~--i~~~l~~~~~~~~~~~~~ll~Y~--~S~~~~~~~~~~VgYas~~~~~~  290 (291)
                      +.||..+  +..++.++..++. .+.+++.|+  .+        +.|||+.+.|...
T Consensus       234 ~~ag~~~~~~~~~~~~~GA~~~-~~~~~~~y~~~p~--------~~tG~~~~~~~~~  281 (302)
T 1b4u_B          234 RESGSEGVELVMWLIMRGALPE-KVRDLYTFYHIPA--------SNTALGAMILQPE  281 (302)
T ss_dssp             HHHCTTGGGGHHHHHHHHTSCS-CEEEEEEEEEEEE--------TTEEEEEEEEEEG
T ss_pred             HHcCCChhHHHHHHHHHHcCCC-CCCcEEEEeccCC--------cceeeEEEEEecC
Confidence            7888765  3444555555554 368888888  43        6799999998653

>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1

Probab=99.66  E-value=5.9e-17  Score=146.00  Aligned_cols=202  Identities=12%  Similarity=0.082  Sum_probs=139.3

Q ss_pred             eeeecCCchhc--hHHHHHHHHHhcCC--CCCCEEEEECCCCCCCCCceeEeCCCcccc-------C--C----CCCCCc
Q 022859           42 GVIAPHAGYSY--SGRAAAYAFGNIDP--TSISRVFLLGPSHHYYTPKCALSTATVYKT-------P--I----GDLPLD  104 (291)
Q Consensus        42 a~I~PHag~~y--sg~~aa~ay~~l~~--~~~~~VvIlGp~H~~~~~~~~~~~~~~~~T-------P--l----G~~~vD  104 (291)
                      .+.++|-+...  ....+..+++.+..  .+||.|||+++++....  .++......+|       |  +    ...+.|
T Consensus        17 ~~flsHGsP~~~~~~~~~~~~l~~l~~~l~~P~aIvviSaHw~~~~--~~V~~~~~~~~i~Df~gfp~~ly~~~y~~~g~   94 (271)
T 2pw6_A           17 ALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRG--TGVTAMETPPTIHDFGGFPQALYDTHYPAPGS   94 (271)
T ss_dssp             EEEEECC-CCCCSSCCHHHHHHHHHHHHSCCCSEEEEEEEEEEESS--EEEECCCC-------------CCSCCCCCCBC
T ss_pred             EEEECCCCCccCCCchHHHHHHHHHHHhCCCCCEEEEEcCCCCCCc--eEEEeCCCCCCcCCcCcCCCcCcccccCCCCC
Confidence            55567754421  11235566776642  28999999999433333  44444333332       3  2    367899


Q ss_pred             HHHHHHHHhcC---CceecccccCccccccccchHHHHHHhcCCCeeEEEEEeC-CCCHHHHHHHHHHHHHhhCCCCeEE
Q 022859          105 LEVIEELKATG---KFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVG-AVNAENEAMYGRLFAKYVDDPSNFF  180 (291)
Q Consensus       105 ~~~~~~L~~~~---~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg-~~~~~~~~~l~~~L~~~~~~~~~li  180 (291)
                      .++++++.+..   ++.. +......||+.-|+|-|   ++|+.++|||||.++ ..+++++.+||++|+++ ++++|+|
T Consensus        95 peLA~~i~~~l~~~g~~~-~~~~~glDHG~~vPL~~---m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~l-rd~~VlI  169 (271)
T 2pw6_A           95 PALAQRLVELLAPIPVTL-DKEAWGFDHGSWGVLIK---MYPDADIPMVQLSIDSSKPAAWHFEMGRKLAAL-RDEGIML  169 (271)
T ss_dssp             HHHHHHHHHHHTTSCEEE-ESSCCCCCHHHHHHHHH---HSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGG-GGGTEEE
T ss_pred             HHHHHHHHHHHHhcCCcc-cccccCCCcchhhhHHH---hcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHH-HHcCcEE
Confidence            99999987754   4432 22456789999988776   567678999999998 47889999999999884 5678999


Q ss_pred             EEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHH-cC--ChHHHHHHHHhcCCCcC-----ChhHHHHHHHHH
Q 022859          181 SVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIE-TG--DPDAFKKYLLEYDNTIC-----GRHPISVFLHML  252 (291)
Q Consensus       181 v~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~-~~--d~~~~~~~~~~~~~~~C-----G~~~i~~~l~~~  252 (291)
                      |+|+++||.....++..  .  ......+++||+++++.|. ++  |.+++.++..+.....|     +..|+.++++++
T Consensus       170 igSG~lsHnL~~~~~~~--~--~~~~~~~~eFD~~~~~~l~~~g~~d~~~L~~~~~~~~a~~a~p~~eh~~pl~~alGa~  245 (271)
T 2pw6_A          170 VASGNVVHNLRTVKWHG--D--SSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAW  245 (271)
T ss_dssp             EEEECSSCCTTSCCSSS--C--CCCCHHHHHHHHHHHTTTTCCSCGGGCTTTSGGGSTTHHHHCSSSTTTHHHHHHHHTC
T ss_pred             EEeCccccCCCcccccC--c--CCCCchHHHHHHHHHHHHHhcCCcCHHHHhCcccChhHHHhCCchHhHHHHHHHHhCC
Confidence            99999999987654420  0  0113678999999999999 89  99999887654444445     888877777776


Q ss_pred             hh
Q 022859          253 GN  254 (291)
Q Consensus       253 ~~  254 (291)
                      ..
T Consensus       246 ~~  247 (271)
T 2pw6_A          246 DG  247 (271)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	291
d1b4ub_	298	LigB subunit of an aromatic-ring-opening dioxygena	99.81
d2pw6a1	258	Uncharacterized protein YgiD {Escherichia coli [Ta	99.3

>d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening dioxygenase LigAB {Pseudomonas paucimobilis [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: LigB subunit of an aromatic-ring-opening dioxygenase LigAB
species: Pseudomonas paucimobilis [TaxId: 13689]

Probab=99.81  E-value=2.4e-19  Score=161.16  Aligned_cols=203  Identities=14%  Similarity=0.133  Sum_probs=133.4

Q ss_pred             CCCCEEEEECCCCCCCCC-----ceeEeCCCccccC--------CCCCCCcHHHHHHHHhcC---CceecccccCccccc
Q 022859           67 TSISRVFLLGPSHHYYTP-----KCALSTATVYKTP--------IGDLPLDLEVIEELKATG---KFELMDICVDEAEHS  130 (291)
Q Consensus        67 ~~~~~VvIlGp~H~~~~~-----~~~~~~~~~~~TP--------lG~~~vD~~~~~~L~~~~---~~~~~d~~~~~~EHs  130 (291)
                      .+||+|||+||+|+..+.     .+++...+.+..+        .-+++.|.+++++|.+..   +|..........||+
T Consensus        48 ~kPDviVVvs~DH~~~f~~~~~p~f~ig~~~~~~~~~~~~~~~~~~~~~g~~eLA~~i~~~~~~~g~d~~~~~~~~lDHg  127 (298)
T d1b4ub_          48 NMPDVVILVYNDHASAFDMNIIPTFAIGCAETFKPADEGWGPRPVPDVKGHPDLAWHIAQSLILDEFDMTIMNQMDVDHG  127 (298)
T ss_dssp             TSCSEEEEEECCCSSSCCTTEEESBEEECSSEECBCBCSSSBCSSCCEECCHHHHHHHHHHHHHTTCCCEEESSCCBCHH
T ss_pred             cCcCEEEEEeccHHHHhccccCCcccccccccccCCccccCccCCCCCCCCHHHHHHHHHHHHHCCCCcccccCcCcccc
Confidence            479999999999998753     3444433333321        234678999999997753   443332334578999


Q ss_pred             cccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCCCCCCccCCcc
Q 022859          131 MEMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGSRFNYMHYDKK  201 (291)
Q Consensus       131 lEvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~~~g~~p~~~~  201 (291)
                      .-++|-||..-..+..+++|||.++.     .+.++|++||++|+++++    |+||+||+|+||||+.+.    |   .
T Consensus       128 ~~vPl~~l~~~~~~~~ipvVpi~~n~~~~p~~s~~r~~~lG~ai~~ai~~~~~d~rV~viaSGgLSH~l~~----~---~  200 (298)
T d1b4ub_         128 CTVPLSMIFGEPEEWPCKVIPFPVNVVTYPPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQG----P---R  200 (298)
T ss_dssp             HHHHHHHHHCSCSSCSSEEEEEEBCCSSSCCCCHHHHHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSS----T---T
T ss_pred             cceeHHHhcCccccCCCceEEEeeeccCCCCCCHHHHHHHHHHHHHHHHhcccCCCEEEEEeCcccccCCC----C---C
Confidence            99999987554422348999999976     367999999999999884    578999999999999641    1   0


Q ss_pred             ccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCChhHHHHHHHHHhhCCCCCceEEEeec-CCCCCCCCCC
Q 022859          202 HGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICGRHPISVFLHMLGNCSTKIKIKFLRYE-QSSQCKTKRD  277 (291)
Q Consensus       202 ~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~-~S~~~~~~~~  277 (291)
                      .   ....++||+++++.+.+ |...++....+.   ....||.. +...+.++..++.+ ..+...|+ -+       .
T Consensus       201 ~---~~~~~efD~~~l~~l~~-~~~~~~~~~~~e~~~~aG~~g~E-lr~wi~~~gAl~~~-~~~~~~~~~~p-------~  267 (298)
T d1b4ub_         201 A---GLINKEFDLNFIDKLIS-DPEELSKMPHIQYLRESGSEGVE-LVMWLIMRGALPEK-VRDLYTFYHIP-------A  267 (298)
T ss_dssp             T---TBCCHHHHHHHHHHHHH-CHHHHTTCCHHHHHHHHCTTGGG-GHHHHHHHHTSCSC-EEEEEEEEEEE-------E
T ss_pred             C---CCCCHHHHHHHHHHHhc-ChHhhhhCCcHHHHHHhccCHHH-HHHHHHHHHhcCCC-cceEEEEEecc-------c
Confidence            0   12237899999999986 555555443322   23457742 23333344444432 33444333 22       1


Q ss_pred             CeeEeeEEEEEe
Q 022859          278 SSVSYASAAAKV  289 (291)
Q Consensus       278 ~~VgYas~~~~~  289 (291)
                      ..+||+.+.|.-
T Consensus       268 ~~tG~g~~~~~p  279 (298)
T d1b4ub_         268 SNTALGAMILQP  279 (298)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             eeecEEEEEEec
Confidence            668999888753

>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: Uncharacterized protein YgiD
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=1.3e-12  Score=114.46  Aligned_cols=185  Identities=12%  Similarity=0.073  Sum_probs=122.4

Q ss_pred             HHHHhcC--CCCCCEEEEECCCCCCCCCceeEeCC---------CccccCCCC----CCCcHHHHHHHHhcC---Cceec
Q 022859           59 YAFGNID--PTSISRVFLLGPSHHYYTPKCALSTA---------TVYKTPIGD----LPLDLEVIEELKATG---KFELM  120 (291)
Q Consensus        59 ~ay~~l~--~~~~~~VvIlGp~H~~~~~~~~~~~~---------~~~~TPlG~----~~vD~~~~~~L~~~~---~~~~~  120 (291)
                      ++++.+.  -.+||+|||++| |.... +..+...         ..+--++-.    .+.|.++++++.+..   ++.. 
T Consensus        23 ~~l~~lg~~l~kP~aIvviSa-Hw~~~-~~~v~~~~~~~~~~Df~gFp~~ly~~~y~~~g~~~La~~i~~~l~~~gi~~-   99 (258)
T d2pw6a1          23 RSWQKLGMTLPRPQAIVVVSA-HWFTR-GTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTL-   99 (258)
T ss_dssp             HHHHHHHHHSCCCSEEEEEEE-EEEES-SEEEECCCC-------------CCSCCCCCCBCHHHHHHHHHHHTTSCEEE-
T ss_pred             HHHHHHHHhcCCCCEEEEECC-CcCCC-CceEEecCCCCccccccccchhhccccCcCCCCHHHHHHHHHHhccCCccc-
Confidence            3445443  247999999999 76432 2223221         122123323    558888888887632   4432 


Q ss_pred             ccccCccccccccchHHHHHHhcCCCeeEEEEEeCC-CCHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCCCCCCCCccCC
Q 022859          121 DICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-VNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYD  199 (291)
Q Consensus       121 d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-~~~~~~~~l~~~L~~~~~~~~~liv~SsDlsH~g~~~g~~p~~  199 (291)
                      ++.....||+.-|+|-++   +|+.++++|+|.+.. .+.++..+||++|+++. +++++||+|+|+||-+..+.+..  
T Consensus       100 ~~~~~glDHG~~vPL~~m---~p~~~~pvv~iS~~~~~~~~~~~~lG~aL~~lr-~e~vliIgSG~lsHnL~~~~~~~--  173 (258)
T d2pw6a1         100 DKEAWGFDHGSWGVLIKM---YPDADIPMVQLSIDSSKPAAWHFEMGRKLAALR-DEGIMLVASGNVVHNLRTVKWHG--  173 (258)
T ss_dssp             ESSCCCCCHHHHHHHHHH---STTCCSCEEEEEEETTSCHHHHHHHHHHHGGGG-GGTEEEEEEECSSCCTTSCCSSS--
T ss_pred             cCCCccccccceeeeeEe---cCcccceEEEEecCCCCCHHHHHHHHHHHHHHH-HCCEEEEEecccccccccccccC--
Confidence            334467999999888774   566689999999864 68888899999999874 56899999999999886544321  


Q ss_pred             ccccchhHHHHHHHHHHHHHHHcCC---hHHHHHHHHhc-----CCCcCChhHHHHHHHHHhh
Q 022859          200 KKHGVIHKSIEALDKMGMDIIETGD---PDAFKKYLLEY-----DNTICGRHPISVFLHMLGN  254 (291)
Q Consensus       200 ~~~~~~~~~~~~~D~~~i~~i~~~d---~~~~~~~~~~~-----~~~~CG~~~i~~~l~~~~~  254 (291)
                        .......+.+||+.+.+.|.+.+   .+.+.++.+..     +-+.-..-|+.++++++..
T Consensus       174 --~~~~~~~a~~Fd~w~~~~l~~~~~~~~~~l~~~~~~p~a~~ahPt~EH~~Pl~~alGa~~~  234 (258)
T d2pw6a1         174 --DSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDG  234 (258)
T ss_dssp             --CCCCCHHHHHHHHHHHTTTTCCSCGGGCTTTSGGGSTTHHHHCSSSTTTHHHHHHHHTCCS
T ss_pred             --CCCCCcHHHHHHHHHHHHHhcCCchhhHHHHHHHhChhHhhcCCchhHHHHHHHHhhCCCC
Confidence              11113667899999999998874   33454432211     2345588899998888754