Citrus Sinensis ID: 022861

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MRRITGMPLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDASLDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPIR
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHEEEEEEEcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHEEEEEcHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mrritgmplnssssefgTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIElrvpeygwtTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLdlpgllffSTYTLLVLFWAEIYHqarslptdklRIFYISVNGIIYFIQVCIWVYLwiddssaaEFIGKIFIAVVSFIAALGFLLYGGRLFFMLrrfpieskgrrkklhevGSVTAICFTCFLIRCFVVVLSafdkdasldvmdhpVLNLIYYMLVEILPSALVLYILRklppkrisaqyhpir
Flexible Loop (DISEMBL)
mrritgmplnssssefGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESkgrrkklhevgSVTAICFTCFLIRCFVVVLSAFDKDASLDVMDHPVLNLIYYMLVEILPSALVLYILRklppkrisaqyhpir
Low Complexity Region (SEG)
MRRITGMPLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKvltlvvldlpgllFFSTYTLLVLFWAEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIAAlgfllyggrlffmlrrfPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDASLDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPIR
Disordered region (IsUnstruct)
****************GTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDASLDVMDHPVLNLIYYMLVEILPSALVLYILRKLP************
Disordered Region (DISOPRED)
**************EFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIAALGFLLYGGRLFF*******************GSVTAICFTCFLIRCFVVVLSAFDKDASLDVMDHPVLNLIYYMLVEILPSALVLYIL****************
Disordered Region (DISEMBL)
MRRITGMPLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDASLDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPIR
Disordered Region (DISPRO)
*******PLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDASLDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISA******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRITGMPLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDASLDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
74038605	288	tobamovirus multiplication 1 [Nicotiana	0.986	0.996	0.860	1e-143
407728573	288	tobamovirus multiplication 1 [Solanum ha	0.975	0.986	0.848	1e-140
407728577	288	tobamovirus multiplication 1 [Solanum ha	0.975	0.986	0.852	1e-140
407728571	288	tobamovirus multiplication 1 [Solanum ha	0.975	0.986	0.848	1e-140
407728575	288	tobamovirus multiplication 1 [Solanum ha	0.975	0.986	0.848	1e-140
407728567	288	tobamovirus multiplication 1 [Solanum ha	0.975	0.986	0.848	1e-140
407728581	288	tobamovirus multiplication 1 [Solanum ha	0.975	0.986	0.848	1e-140
350537711	288	tobamovirus multiplication 1 homolog 3 [	0.975	0.986	0.845	1e-139
407728569	288	tobamovirus multiplication 1 [Solanum ha	0.975	0.986	0.845	1e-139
407728565	288	tobamovirus multiplication 1 [Solanum ha	0.975	0.986	0.845	1e-138

>gi|74038605|dbj|BAE43836.1| tobamovirus multiplication 1 [Nicotiana tabacum]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/287 (86%), Positives = 265/287 (92%)

Query: 4   ITGMPLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRV 63
           +T +PL SSS +     T+WW +INES QWQDGIFYSLCA+YALVS+VALIQLIRIELRV
Sbjct: 1   MTRLPLGSSSIDIAGPTTNWWDQINESVQWQDGIFYSLCASYALVSAVALIQLIRIELRV 60

Query: 64  PEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLV 123
           PEYGWTTQKVFHLMNF+VNGVRA+VFGFH QVFL HPKVL+L +LDLPGLLFFST+TLLV
Sbjct: 61  PEYGWTTQKVFHLMNFVVNGVRAIVFGFHKQVFLFHPKVLSLAILDLPGLLFFSTFTLLV 120

Query: 124 LFWAEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVS 183
           LFWAEIYHQARSLPTDKLRI YIS+NG IYFIQ CIWVYLW +D+S  EFIGKIFIAVVS
Sbjct: 121 LFWAEIYHQARSLPTDKLRISYISINGAIYFIQACIWVYLWSNDNSTVEFIGKIFIAVVS 180

Query: 184 FIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDK 243
           FIAALGFLLYGGRLF MLRRFPIESKGRRKKLHEVGSVTAICFTCFLI CFVVVLSAFD 
Sbjct: 181 FIAALGFLLYGGRLFLMLRRFPIESKGRRKKLHEVGSVTAICFTCFLISCFVVVLSAFDP 240

Query: 244 DASLDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPI 290
           DASLDV+DHPVLNLIYY+LVEILPSALVLYILRKLPPKR+SAQYHPI
Sbjct: 241 DASLDVLDHPVLNLIYYLLVEILPSALVLYILRKLPPKRVSAQYHPI 287

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407728573|dbj|BAM48557.1| tobamovirus multiplication 1 [Solanum habrochaites] gi|407728583|dbj|BAM48562.1| tobamovirus multiplication 1 [Solanum habrochaites]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/284 (84%), Positives = 263/284 (92%)

Query: 7   MPLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEY 66
           +PL SS  +    +T+WW  +N+S QWQDGIFYSLCA+YALVS+VALIQLIRI+LRVPEY
Sbjct: 4   LPLGSSPIDIAGPVTNWWDHVNQSVQWQDGIFYSLCASYALVSAVALIQLIRIDLRVPEY 63

Query: 67  GWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFW 126
           GWTTQKVFHLMNF+VNGVRA+VFGFH QVFLLH KVLTL +LDLPGLLFFST+TLLVLFW
Sbjct: 64  GWTTQKVFHLMNFVVNGVRAIVFGFHKQVFLLHYKVLTLAILDLPGLLFFSTFTLLVLFW 123

Query: 127 AEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIA 186
           AEIYHQARSLPTDKLRI Y+++NG IYFIQ CIWVYLWI+D+S  EFIGKIF+AVVS IA
Sbjct: 124 AEIYHQARSLPTDKLRISYVAINGAIYFIQACIWVYLWINDNSTVEFIGKIFMAVVSVIA 183

Query: 187 ALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDAS 246
           ALGFLLYGGRLF MLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFD DAS
Sbjct: 184 ALGFLLYGGRLFLMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDSDAS 243

Query: 247 LDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPI 290
           LDV+DHPVLNLIYY+LVEILPSALVLYILRKLPPKR+SAQYHPI
Sbjct: 244 LDVLDHPVLNLIYYLLVEILPSALVLYILRKLPPKRVSAQYHPI 287

Source: Solanum habrochaites

Species: Solanum habrochaites

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407728577|dbj|BAM48559.1| tobamovirus multiplication 1 [Solanum habrochaites]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/284 (85%), Positives = 262/284 (92%)

Query: 7   MPLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEY 66
           +PL SS  +    +T+WW  +NES QWQDGIFYSLCA+YALVS+VALIQLIRI+LRVPEY
Sbjct: 4   LPLGSSPIDIAGPVTNWWDHVNESVQWQDGIFYSLCASYALVSAVALIQLIRIDLRVPEY 63

Query: 67  GWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFW 126
           GWTTQKVFHLMNF+VNGVRA+VFGFH QVFLLH KVLTL +LDLPGLLFFST+TLLVLFW
Sbjct: 64  GWTTQKVFHLMNFVVNGVRAIVFGFHKQVFLLHYKVLTLAILDLPGLLFFSTFTLLVLFW 123

Query: 127 AEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIA 186
           AEIYHQARSLPTDKLRI YI++N  IYFIQ CIWVYLWI+D+S  EFIGKIF+AVVS IA
Sbjct: 124 AEIYHQARSLPTDKLRISYIAINCAIYFIQACIWVYLWINDNSTVEFIGKIFMAVVSVIA 183

Query: 187 ALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDAS 246
           ALGFLLYGGRLF MLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFD DAS
Sbjct: 184 ALGFLLYGGRLFLMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDSDAS 243

Query: 247 LDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPI 290
           LDV+DHPVLNLIYY+LVEILPSALVLYILRKLPPKR+SAQYHPI
Sbjct: 244 LDVLDHPVLNLIYYLLVEILPSALVLYILRKLPPKRVSAQYHPI 287

Source: Solanum habrochaites

Species: Solanum habrochaites

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407728571|dbj|BAM48556.1| tobamovirus multiplication 1 [Solanum habrochaites]

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/284 (84%), Positives = 262/284 (92%)

Query: 7   MPLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEY 66
           +PL SS  +    +T+WW  +N+S QWQDGIFYSLCA+YALVS+VALIQLIRI+LRVPEY
Sbjct: 4   LPLESSPIDIAGPVTNWWDHVNQSVQWQDGIFYSLCASYALVSAVALIQLIRIDLRVPEY 63

Query: 67  GWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFW 126
           GWTTQKVFHLMNF+VNGVRA+VFGFH QVFLLH KVLTL +LDLPGLLFFST+TLLVLFW
Sbjct: 64  GWTTQKVFHLMNFVVNGVRAIVFGFHKQVFLLHYKVLTLAILDLPGLLFFSTFTLLVLFW 123

Query: 127 AEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIA 186
           AEIYHQARSLPTDKLRI YI++N  IYFIQ CIWVYLWI+D+S  EFIGKIF+AVVS IA
Sbjct: 124 AEIYHQARSLPTDKLRISYIAINCAIYFIQACIWVYLWINDNSTVEFIGKIFMAVVSVIA 183

Query: 187 ALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDAS 246
           ALGFLLYGGRLF MLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFD DAS
Sbjct: 184 ALGFLLYGGRLFLMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDSDAS 243

Query: 247 LDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPI 290
           LDV+DHPVLNLIYY+LVEILPSALVLYILRKLPPKR+SAQYHPI
Sbjct: 244 LDVLDHPVLNLIYYLLVEILPSALVLYILRKLPPKRVSAQYHPI 287

Source: Solanum habrochaites

Species: Solanum habrochaites

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407728575|dbj|BAM48558.1| tobamovirus multiplication 1 [Solanum habrochaites]

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/284 (84%), Positives = 261/284 (91%)

Query: 7   MPLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEY 66
           +PL SS  +    +T+WW  +NES QWQDGIFYSLCA+YALVS+VALIQLIRI+LRVPEY
Sbjct: 4   LPLESSPIDIAGPVTNWWDHVNESVQWQDGIFYSLCASYALVSAVALIQLIRIDLRVPEY 63

Query: 67  GWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFW 126
           GWTTQKVFHLMNF+VNG RA+VFGFH QVFLLH KVLTL +LDLPGLLFFST+TLLVLFW
Sbjct: 64  GWTTQKVFHLMNFVVNGARAIVFGFHKQVFLLHYKVLTLAILDLPGLLFFSTFTLLVLFW 123

Query: 127 AEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIA 186
           AEIYHQARSLPTDKLRI YI++N  IYFIQ CIWVYLWI+D+S  EFIGKIF+AVVS IA
Sbjct: 124 AEIYHQARSLPTDKLRISYIAINCAIYFIQACIWVYLWINDNSTVEFIGKIFMAVVSVIA 183

Query: 187 ALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDAS 246
           ALGFLLYGGRLF MLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFD DAS
Sbjct: 184 ALGFLLYGGRLFLMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDSDAS 243

Query: 247 LDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPI 290
           LDV+DHPVLNLIYY+LVEILPSALVLYILRKLPPKR+SAQYHPI
Sbjct: 244 LDVLDHPVLNLIYYLLVEILPSALVLYILRKLPPKRVSAQYHPI 287

Source: Solanum habrochaites

Species: Solanum habrochaites

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407728567|dbj|BAM48554.1| tobamovirus multiplication 1 [Solanum habrochaites]

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/284 (84%), Positives = 262/284 (92%)

Query: 7   MPLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEY 66
           +PL SS  +    +T+WW  +N+S QWQDGIFYSLCA+YALVS+VALIQLIRI+LRVPEY
Sbjct: 4   LPLGSSPIDIAGPVTNWWDHVNQSVQWQDGIFYSLCASYALVSAVALIQLIRIDLRVPEY 63

Query: 67  GWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFW 126
           GWTTQKVFHLMNF+VNGVRA+VFGFH QVFLLH KVLTL +LDLPGLLFFST+TLLVLFW
Sbjct: 64  GWTTQKVFHLMNFVVNGVRAIVFGFHKQVFLLHYKVLTLAILDLPGLLFFSTFTLLVLFW 123

Query: 127 AEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIA 186
           AEIYHQARSLPTDKLRI YI++N  IYFIQ CIWVYLWI+D+S  EFIGKIF+AVVS IA
Sbjct: 124 AEIYHQARSLPTDKLRISYIAINCAIYFIQACIWVYLWINDNSTVEFIGKIFMAVVSVIA 183

Query: 187 ALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDAS 246
           ALGFLLYGGRLF MLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFD DAS
Sbjct: 184 ALGFLLYGGRLFLMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDSDAS 243

Query: 247 LDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPI 290
           LDV+DHPVLNLIYY+LVEILPSALVLYILRKLPPKR+SAQYHPI
Sbjct: 244 LDVLDHPVLNLIYYLLVEILPSALVLYILRKLPPKRVSAQYHPI 287

Source: Solanum habrochaites

Species: Solanum habrochaites

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407728581|dbj|BAM48561.1| tobamovirus multiplication 1 [Solanum habrochaites]

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/284 (84%), Positives = 261/284 (91%)

Query: 7   MPLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEY 66
           +PL SS       +T+WW  +NES QWQDGIFYSLCA+YALVS+VALIQLIRI+LRVPEY
Sbjct: 4   LPLESSPMNIAGPVTNWWDHVNESVQWQDGIFYSLCASYALVSAVALIQLIRIDLRVPEY 63

Query: 67  GWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFW 126
           GWTTQKVFHLMNF+VNGVRA+VFGFH QVFLLH KVLTL +L+LPGLLFFST+TLLVLFW
Sbjct: 64  GWTTQKVFHLMNFVVNGVRAIVFGFHKQVFLLHYKVLTLAILNLPGLLFFSTFTLLVLFW 123

Query: 127 AEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIA 186
           AEIYHQARSLPTDKLRI YI++N  IYFIQ CIWVYLWI+D+S  EFIGKIF+AVVS IA
Sbjct: 124 AEIYHQARSLPTDKLRISYIAINCAIYFIQACIWVYLWINDNSTVEFIGKIFMAVVSVIA 183

Query: 187 ALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDAS 246
           ALGFLLYGGRLF MLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFD DAS
Sbjct: 184 ALGFLLYGGRLFLMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDSDAS 243

Query: 247 LDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPI 290
           LDV+DHPVLNLIYY+LVEILPSALVLYILRKLPPKR+SAQYHPI
Sbjct: 244 LDVLDHPVLNLIYYLLVEILPSALVLYILRKLPPKRVSAQYHPI 287

Source: Solanum habrochaites

Species: Solanum habrochaites

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537711|ref|NP_001234306.1| tobamovirus multiplication 1 homolog 3 [Solanum lycopersicum] gi|74038613|dbj|BAE43840.1| tobamovirus multiplication 1 homolog 3 [Solanum lycopersicum]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/284 (84%), Positives = 260/284 (91%)

Query: 7   MPLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEY 66
           +PL SS  +    +T+WW  +NES QWQDGIFYSLCA+Y LVS+VALIQLIRI+LRVPEY
Sbjct: 4   LPLGSSPIDIAGPVTNWWDHVNESVQWQDGIFYSLCASYGLVSAVALIQLIRIDLRVPEY 63

Query: 67  GWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFW 126
           GWTTQKVFHLMNF+VNGVRA+VFGFH  VFLLH KVLTL +LDLPGLLFFST+TLLVLFW
Sbjct: 64  GWTTQKVFHLMNFVVNGVRAIVFGFHKHVFLLHYKVLTLAILDLPGLLFFSTFTLLVLFW 123

Query: 127 AEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIA 186
           AEIYHQARSLPTDKLRI YI++N  IYFIQ CIWVYLWI+D+S  EFIGKIF+AVVS IA
Sbjct: 124 AEIYHQARSLPTDKLRISYIAINDAIYFIQACIWVYLWINDNSTVEFIGKIFMAVVSVIA 183

Query: 187 ALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDAS 246
           ALGFLLYGGRLF MLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFD DAS
Sbjct: 184 ALGFLLYGGRLFLMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDSDAS 243

Query: 247 LDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPI 290
           LDV+DHPVLNLIYY+LVEILPSALVLYILRKLPPKR+SAQYHPI
Sbjct: 244 LDVLDHPVLNLIYYLLVEILPSALVLYILRKLPPKRVSAQYHPI 287

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407728569|dbj|BAM48555.1| tobamovirus multiplication 1 [Solanum habrochaites]

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/284 (84%), Positives = 261/284 (91%)

Query: 7   MPLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEY 66
           +PL SS  +    +T WW  +N+S QWQDGIFYSLCA+YALVS+VALIQLIRI+LRVPEY
Sbjct: 4   LPLGSSPIDIAGPVTYWWDHVNQSVQWQDGIFYSLCASYALVSAVALIQLIRIDLRVPEY 63

Query: 67  GWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFW 126
           GWTTQKVFHLMNF+VNGVRA+VFGFH QVFLLH KVLTL +LDLPGLLFFST+TLLVLFW
Sbjct: 64  GWTTQKVFHLMNFVVNGVRAIVFGFHKQVFLLHYKVLTLAILDLPGLLFFSTFTLLVLFW 123

Query: 127 AEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIA 186
           AEIYHQARSLPTDKLRI YI++N  IYFIQ CIWVYLWI+D+S  EFIGKIF+AVVS IA
Sbjct: 124 AEIYHQARSLPTDKLRISYIAINCAIYFIQACIWVYLWINDNSTVEFIGKIFMAVVSVIA 183

Query: 187 ALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDAS 246
           ALGFLLYGGRLF MLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFD DAS
Sbjct: 184 ALGFLLYGGRLFLMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDSDAS 243

Query: 247 LDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPI 290
           LDV+DHPVLNLIYY+LVEILPSALVLYILRKLPP+R+SAQYHPI
Sbjct: 244 LDVLDHPVLNLIYYLLVEILPSALVLYILRKLPPRRVSAQYHPI 287

Source: Solanum habrochaites

Species: Solanum habrochaites

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407728565|dbj|BAM48553.1| tobamovirus multiplication 1 [Solanum habrochaites]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/284 (84%), Positives = 261/284 (91%)

Query: 7   MPLNSSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEY 66
           +PL SS  +    +T+WW  +NES QWQDGIFYSLCA+YALVS+VALIQLIRI+LRVPEY
Sbjct: 4   LPLESSPIDIAGPVTNWWDHVNESVQWQDGIFYSLCASYALVSAVALIQLIRIDLRVPEY 63

Query: 67  GWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFW 126
           GWTTQKVFHLMNF+VNGVRA+VFGFH QVFLLH KVLTL +L+LPGLLFFST+TLLVLFW
Sbjct: 64  GWTTQKVFHLMNFVVNGVRAIVFGFHKQVFLLHYKVLTLAILNLPGLLFFSTFTLLVLFW 123

Query: 127 AEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIA 186
           AEIYHQARSLPTDKLRI YI++N  IYFIQ  IWVYLWI+D+S  EFIGKIF+AVVS IA
Sbjct: 124 AEIYHQARSLPTDKLRISYIAINCAIYFIQAYIWVYLWINDNSTVEFIGKIFMAVVSVIA 183

Query: 187 ALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDAS 246
           ALGFLLYGGRLF MLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFD DAS
Sbjct: 184 ALGFLLYGGRLFLMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDSDAS 243

Query: 247 LDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPI 290
           LDV+DHPVLNLIYY+LVEILPSALVLYILRKLPPKR+SAQYHPI
Sbjct: 244 LDVLDHPVLNLIYYLLVEILPSALVLYILRKLPPKRVSAQYHPI 287

Source: Solanum habrochaites

Species: Solanum habrochaites

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2119088	291	TOM1 "AT4G21790" [Arabidopsis	0.941	0.941	0.726	3e-108
TAIR|locus:2051663	303	TOM3 "tobamovirus multiplicati	0.972	0.933	0.531	4.2e-79
TAIR|locus:2012552	293	THH1 "TOM THREE HOMOLOG 1" [Ar	0.993	0.986	0.520	1.5e-76
TAIR|locus:2077705	373	Cand3 "candidate G-protein Cou	0.347	0.270	0.288	3.1e-09
DICTYBASE|DDB_G0280247	298	DDB_G0280247 "Integral membran	0.426	0.416	0.282	1.9e-07
DICTYBASE|DDB_G0284443	287	DDB_G0284443 [Dictyostelium di	0.841	0.853	0.245	0.00098

TAIR|locus:2119088 TOM1 "AT4G21790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
 Identities = 199/274 (72%), Positives = 226/274 (82%)

Query:    18 TVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEYGWTTQKVFHLM 77
             T +TSWW ++NES+QWQDGIF++LC AYALVS+VAL+QLIRI++RVPEYGWTTQKVFHLM
Sbjct:    18 TAITSWWDDVNESTQWQDGIFFALCGAYALVSAVALVQLIRIQMRVPEYGWTTQKVFHLM 77

Query:    78 NFIVNGVRAVVFGFHMQVFLLHPKXXXXXXXXXXXXXFFSTYTLLVLFWAEIYHQARSLP 137
             NF+VNGVRAV+FGFHMQVFL+HPK             FFS YTLLVLFWAEIYHQARSLP
Sbjct:    78 NFVVNGVRAVLFGFHMQVFLVHPKALCWVLLDLPGLLFFSAYTLLVLFWAEIYHQARSLP 137

Query:   138 TDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIAAXXXXXXXXXX 197
             TDKLRI YISVN  +Y  Q+ IW Y+W+ D+S  E +GKIFIAVVSFIAA          
Sbjct:   138 TDKLRITYISVNVAVYLAQIGIWAYIWVHDNSTVELVGKIFIAVVSFIAALGFLLYGGRL 197

Query:   198 XXXXXXXPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDASLDVMDHPVLNL 257
                    PIESKGRRKKLHEVGSVTAICFTCFLIRC VV +SAFDKD +LDV+DHPVLNL
Sbjct:   198 FFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCVVVAVSAFDKDLTLDVLDHPVLNL 257

Query:   258 IYYMLVEILPSALVLYILRKLPPKRISAQYHPIR 291
             IYYM+VE+LPSALVL+ILRKLPPKR+SAQYHPI+
Sbjct:   258 IYYMVVEVLPSALVLFILRKLPPKRVSAQYHPIQ 291

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006914 "autophagy" evidence=RCA

GO:0046786 "viral replication complex formation and maintenance" evidence=IMP

TAIR|locus:2051663 TOM3 "tobamovirus multiplication protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 153/288 (53%), Positives = 196/288 (68%)

Query:     9 LNSSSSEFGTVL-----TSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRV 63
             ++SSSS    +L     ++WW+++NES  WQD IF+ L   Y +VS VA+IQL+RI+LRV
Sbjct:    16 MSSSSSSAVEMLNLKEASNWWSDVNESPIWQDRIFHVLAVLYGIVSLVAVIQLVRIQLRV 75

Query:    64 PEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKXXXXXXXXXXXXXFFSTYTLLV 123
             PEYGWTTQKVFH +NF+VNGVRAVVF F   V  + P+             FF+TY LLV
Sbjct:    76 PEYGWTTQKVFHFLNFVVNGVRAVVFVFRRNVQFMQPEILQHILLDIPSLAFFTTYALLV 135

Query:   124 LFWAEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVS 183
             LFWAEIY+QAR++ TD LR  + ++N ++Y +Q+ +W+ LW         + K+F A VS
Sbjct:   136 LFWAEIYYQARAVSTDGLRPSFFTINAVVYVVQIALWLVLWWKPVRVMVILSKMFFAGVS 195

Query:   184 FIAAXXXXXXXXXXXXXXXXXPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDK 243
               AA                 P+ESKGRRKKL EVG VT ICFTCFLIRC ++  +AFD+
Sbjct:   196 LFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFAAFDE 255

Query:   244 DASLDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPIR 291
              A+LDV+DHP+LN IYY+LVEILPS+LVL+ILRKLPPKR   QYH IR
Sbjct:   256 GANLDVLDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIR 303

GO:0005739 "mitochondrion" evidence=ISM

GO:0046786 "viral replication complex formation and maintenance" evidence=IMP

TAIR|locus:2012552 THH1 "TOM THREE HOMOLOG 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 152/292 (52%), Positives = 191/292 (65%)

Query:     3 RITGMPLNSSSSEFGTVLT---SWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRI 59
             R  G+ + SSS+     L    +WW ++NES  WQD IF+ L   Y +VS +A+IQL+RI
Sbjct:     2 RSGGLEMMSSSAIVAFNLKEGKNWWWDVNESPVWQDRIFHVLAVLYGIVSVIAVIQLVRI 61

Query:    60 ELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHPKXXXXXXXXXXXXXFFSTY 119
             +LRVPEYGWTTQKVFH +NF+VNGVRA+VF F      + P+             FF+TY
Sbjct:    62 QLRVPEYGWTTQKVFHFLNFMVNGVRALVFLFRRDAQNMQPEILQHILLDIPSLAFFTTY 121

Query:   120 TLLVLFWAEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFI 179
              LLVLFWAEIY+QAR++ TD LR  + ++N ++Y IQ+ +W+ LW         I K+F 
Sbjct:   122 ALLVLFWAEIYYQARAVSTDGLRPSFFTINAVVYVIQIALWLVLWWKPVHLMVIISKMFF 181

Query:   180 AVVSFIAAXXXXXXXXXXXXXXXXXPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLS 239
             A VS  AA                 P+ESKGRRKKL EVG VT ICFTCFLIRC ++   
Sbjct:   182 AGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFD 241

Query:   240 AFDKDASLDVMDHPVLNLIYYMLVEILPSALVLYILRKLPPKRISAQYHPIR 291
             AFD  A LDV+DHP+LN IYY+LVEILPS+LVL+ILRKLPPKR   QYH I+
Sbjct:   242 AFDDAADLDVLDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 293

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0046790 "virion binding" evidence=IPI

TAIR|locus:2077705 Cand3 "candidate G-protein Coupled Receptor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
 Identities = 32/111 (28%), Positives = 48/111 (43%)

Query:    37 IFYSLCAAY--ALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQ 94
             I  +LC A+  A ++ +A +QL R   R  + GWT QKV HLM    +   +V++ F   
Sbjct:    21 IAVNLCLAFIDAALAFIAFLQLSRFHRRNKQVGWTRQKVLHLM-IASSNTGSVIY-FVAA 78

Query:    95 VFLL-----H-PKXXXXXXXXXXXXXFFSTYTLLVLFWAEIYHQARSLPTD 139
             V        H                F +T+ LL+ FW ++ HQ      D
Sbjct:    79 VIATCTRWHHWSNALGFLLMAFPKILFLATFLLLLSFWVDVCHQGNGEEDD 129

GO:0009507 "chloroplast" evidence=ISM

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

DICTYBASE|DDB_G0280247 DDB_G0280247 "Integral membrane protein GPR137B" [Dictyostelium discoideum (taxid:44689)]

 Score = 105 (42.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 37/131 (28%), Positives = 64/131 (48%)

Query:    36 GIFYSLCAAYALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQV 95
             GI + L   Y+ ++ +   Q++RI L      ++ +  F L+ FI   +RA+ +GF   +
Sbjct:     7 GIPFPLLILYSSLTLIVSFQIVRI-LYNKHNIFSFRFGFLLLGFIWGLLRAIFWGF-FDI 64

Query:    96 FLLHPKXXXXXXXXXXXXXFFSTYTLLVLFWAEIYHQARSLPTDKLR--IFYISVNGIIY 153
             F  + K              F+T++LLVLF+A + H+       ++R  I Y SVN I+ 
Sbjct:    65 FSSN-KAVLTTFFLIPINIQFATFSLLVLFYAHVVHRTTWERFTRMRFTIVYSSVNIILL 123

Query:   154 FIQVCIWVYLW 164
              +Q+    Y W
Sbjct:   124 VLQIAF--YGW 132

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0284443 DDB_G0284443 [Dictyostelium discoideum (taxid:44689)]

 Score = 109 (43.4 bits), Expect = 0.00098, P = 0.00098
 Identities = 68/277 (24%), Positives = 120/277 (43%)

Query:    35 DGIFYSLCAAYALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQ 94
             D I   L   Y LVS   +   I+   R  +   T Q +F+ + F+   VR+V F F +Q
Sbjct:     9 DVIHLVLSFLYFLVSIFCVFSFIK---RPKKQQNTQQFIFYPLLFLGVIVRSV-FMF-LQ 63

Query:    95 VF-----LLHPKXXXXXXXXXXXXXFFSTYTLLVLFWAEIY-----HQARSLPTDKLRIF 144
              F     ++ P              FFSTY +++  W EIY        RS+ +  + IF
Sbjct:    64 PFVREKSIVIPNQANVLLNTLPSFTFFSTYLIVLFIWVEIYMISYGSMMRSIKSLPI-IF 122

Query:   145 YISVNGIIYFIQVCIWVY---LW-IDDSSAAEF--IGKIFIA---VVSFIAAXXXXXXXX 195
              IS   I+Y + + +++    L+ +D S+ + F  + +I I    V  FI A        
Sbjct:   123 NISTC-IMYIVLIILYILDFTLYKLDYSTVSTFTTLPEIIIGYYDVGCFILASFLFLFFG 181

Query:   196 XXXXXXXXXPIES--KGRRKK-LHEVGSVTAICFTCFLIRCFVVVLSAFDKDASLDVMDH 252
                        ++  + +RK  L  +  +T +   CFL+R  +   +  D          
Sbjct:   182 ISLVVKFRHQQKNFAEDKRKVILRRITFLTGLICCCFLLRAAITCFALIDLHLISGYWWW 241

Query:   253 PVLNLIYYMLVEILPSALVLYILRKLPPK-RISAQYH 288
                +  Y+ ++EI+P +++LY+L+    K RI ++Y+
Sbjct:   242 --FDGAYFTVLEIVPLSIMLYLLQMDRNKTRIPSEYN 276


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.142   0.448    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      291       261   0.00090  114 3  11 21  0.47    32
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  208 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.65u 0.09s 18.74t   Elapsed:  00:00:01
  Total cpu time:  18.65u 0.09s 18.74t   Elapsed:  00:00:01
  Start:  Fri May 10 23:14:44 2013   End:  Fri May 10 23:14:45 2013

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
pfam06454	280	pfam06454, DUF1084, Protein of unknown function (D	1e-170

>gnl|CDD|191530 pfam06454, DUF1084, Protein of unknown function (DUF1084)

 Score =  473 bits (1218), Expect = e-170
 Identities = 204/271 (75%), Positives = 233/271 (85%)

Query: 21  TSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFI 80
             WW ++NES +WQDGIFY L A Y LVS VALIQLIRI+LRVPEYGWTTQKVFHL+NFI
Sbjct: 10  PDWWDDVNESPEWQDGIFYVLAALYGLVSFVALIQLIRIQLRVPEYGWTTQKVFHLLNFI 69

Query: 81  VNGVRAVVFGFHMQVFLLHPKVLTLVVLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDK 140
           VNGVRA+VFGF  QVF LHPK+L  ++LDLPGL FF+TY LLVLFWAEIY+QAR+LPTDK
Sbjct: 70  VNGVRAIVFGFRKQVFNLHPKILQHILLDLPGLAFFTTYALLVLFWAEIYYQARNLPTDK 129

Query: 141 LRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIAALGFLLYGGRLFFM 200
           LR  + ++NG++Y IQ+ IW+ +W   +SA E   KIF AV+SF AALGFLLYGGRLF M
Sbjct: 130 LRPAFYTINGVVYAIQIIIWILIWAGPNSAMEITSKIFFAVISFSAALGFLLYGGRLFLM 189

Query: 201 LRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDASLDVMDHPVLNLIYY 260
           LRRFPIESKGRRKKLHEVGSVTAICFTCFLIRC + ++SAFDK A LDV+DHP+LNLIYY
Sbjct: 190 LRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCVMFLVSAFDKKADLDVLDHPILNLIYY 249

Query: 261 MLVEILPSALVLYILRKLPPKRISAQYHPIR 291
           +LVEILPSALVL+ILRKLPPKR SAQYHPI 
Sbjct: 250 LLVEILPSALVLFILRKLPPKRASAQYHPIS 280

This family consists of several hypothetical plant specific proteins of unknown function. Length = 280

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
PF06454	281	DUF1084: Protein of unknown function (DUF1084); In	100.0
PF04479	226	RTA1: RTA1 like protein; InterPro: IPR007568 This	84.48

>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function

Probab=100.00  E-value=3.1e-73  Score=524.19  Aligned_cols=271  Identities=66%  Similarity=1.147  Sum_probs=263.7

Q ss_pred             ccccccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHhhhheeeeeehhhhhhch
Q 022861           21 TSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHP  100 (291)
Q Consensus        21 ~~~~~~~~~~~~~~~~l~~~La~ly~ll~~~~~~QL~ri~~r~~~~~~t~qkvf~lL~~l~~~~R~i~F~~~~~~~~~~~  100 (291)
                      .|||+|.|++++||+|++|+||++|++++++|++|++|+++|.|+++||+||+||+++++++++|++||++.+++...++
T Consensus        11 ~~w~~~~~~~~~~~~~~~~~La~iy~~v~~~aliQl~ri~~r~~~~~~t~qkvf~ll~~l~~~~R~iyF~~~~~~~~~~~   90 (281)
T PF06454_consen   11 NDWWNDVNESDKWQDGLFYALAAIYLLVALVALIQLIRIQYRVPKYGWTTQKVFHLLIFLANLVRAIYFFLLPSVFLIDP   90 (281)
T ss_pred             cchHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeccccCccHHHHHHHHHHHHHHHHeEEEEEhHhhHhcCh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEEehhHHHHHHHHHhhheeeccccchHHHHHHHHHH
Q 022861          101 KVLTLVVLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIA  180 (291)
Q Consensus       101 ~~~~~iL~~lP~~lfFstf~LLvlfWa~i~~~a~~~~~~~l~~~f~~iN~iiy~~~i~i~i~~~~~~~~~~~i~~~~~~a  180 (291)
                      +..+++|+++|+++|||+|+++++||+|+||++++..++|+|+.|.++|+++|++++++|++.+.++.+.++++++.++|
T Consensus        91 ~~~~~iL~~lP~~lfFSty~llvlfWaeIy~~ar~~~~~~l~~~~~~iN~~iY~~~i~i~i~~~~~~~~~v~~i~~~~~A  170 (281)
T PF06454_consen   91 NVLDYILNDLPTFLFFSTYTLLVLFWAEIYYQARSVSTDKLRPIFIVINVVIYLFQIIIWILLFFSPSSTVSIIYAIFIA  170 (281)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhheecccchHHHHHHHHHHH
Confidence            89999999999999999999999999999999999889999999999999999999999999988888889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhccccccccccceeeeeeeeehhHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHH
Q 022861          181 VVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDASLDVMDHPVLNLIYY  260 (291)
Q Consensus       181 ~isll~a~~F~~yG~kL~~~lr~~~~es~~~~~kl~~v~~vt~ic~~~F~~R~i~~l~~~~~~~~~~~~~~~~~~~~i~y  260 (291)
                      ++++++|+||++||+|++.|||++|.|+++|++|++|++.+|.+|++||++||+++++++++++.|+|..++++++++||
T Consensus       171 ~isli~a~~Fl~YG~~L~~~Lr~~p~~s~~r~kkl~~V~~vt~ic~~cF~ir~i~~~~~~~~~~~~~d~~~~~i~~~iyy  250 (281)
T PF06454_consen  171 VISLIAALGFLYYGGKLFFKLRRFPIESKGRSKKLRKVGFVTIICSVCFLIRCIMVLFSAFDKPANLDVLSHPILNFIYY  250 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888899889999999999


Q ss_pred             HHHHHhhHHhhHhhhccCCCCCCCCCcccCC
Q 022861          261 MLVEILPSALVLYILRKLPPKRISAQYHPIR  291 (291)
Q Consensus       261 ~i~EilPs~lvL~~~r~~p~~~~~~~~~~~~  291 (291)
                      +++|++|++++||++||+|||++++|||||+
T Consensus       251 ~i~EivPs~lvL~~~r~lPp~~~~~~~~~~~  281 (281)
T PF06454_consen  251 FITEIVPSALVLYILRKLPPKRASAQYHPIR  281 (281)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCcccccCCCCC
Confidence            9999999999999999999999999999996

>PF04479 RTA1: RTA1 like protein; InterPro: IPR007568 This family is comprised of fungal proteins with multiple transmembrane regions

Probab=84.48  E-value=9.6  Score=34.14  Aligned_cols=133  Identities=19%  Similarity=0.181  Sum_probs=67.5

Q ss_pred             ceeEEEehhHHHHHHHHHhhheeec-ccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccccccccc----cc
Q 022861          141 LRIFYISVNGIIYFIQVCIWVYLWI-DDS---SAAEFIGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKG----RR  212 (291)
Q Consensus       141 l~~~f~~iN~iiy~~~i~i~i~~~~-~~~---~~~~i~~~~~~a~isll~a~~F~~yG~kL~~~lr~~~~es~~----~~  212 (291)
                      ....|+..+++..++|.+--.+... +..   +.+.+.--.+|.+...+..+....+-.|+    ++.+.+.+.    .+
T Consensus        72 ~~~iFv~~Dv~s~~lQ~~Gg~l~~~~~s~~~G~~i~iaGl~~Ql~~~~~F~~~~~~f~~r~----~~~~~~~~~~~~~~~  147 (226)
T PF04479_consen   72 YTKIFVTLDVISLVLQAAGGGLAASANSRKTGRNIVIAGLALQLAFFGIFLILALRFHYRL----RRRPRKAVHRNRPKS  147 (226)
T ss_pred             hhHHHHHHHHHHHHHhhcCcceeeecccccCCCEEEEehHHHHHHHHHHHHHHHHHHHHHH----hcccccccccccccc
Confidence            3457788888888888765443322 111   11111111222222211122222333333    333322221    12


Q ss_pred             eeeeeeeeehhHHHHHHHHHHHHHHHH-hccCCCCCCccchhHHHHHHHHHHHHhhHHhhHhhhcc-CCCCCC
Q 022861          213 KKLHEVGSVTAICFTCFLIRCFVVVLS-AFDKDASLDVMDHPVLNLIYYMLVEILPSALVLYILRK-LPPKRI  283 (291)
Q Consensus       213 ~kl~~v~~vt~ic~~~F~~R~i~~l~~-~~~~~~~~~~~~~~~~~~i~y~i~EilPs~lvL~~~r~-~p~~~~  283 (291)
                      ++.+.....-.+.+++-.+||++=+.- +.+.+.  ....|.    .++.+.|-+|..+....+.- -||+..
T Consensus       148 ~~~~~~~~~L~~a~~li~iR~iyR~vE~~~G~~g--~l~~~E----~~fyvlDa~~m~l~~~~~~v~~hpg~~  214 (226)
T PF04479_consen  148 WRWRIFLIALYVASLLILIRSIYRLVEFAQGWDG--YLMTHE----WYFYVLDALPMLLAMVILNVWFHPGYI  214 (226)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhheecCCCCC--CchHhH----HHHHHHHHHHHHHHHHHHHhhcCchhh
Confidence            222344455556777888999986542 211111  112344    45778999999999988887 777764

RTA1 (P53047 from SWISSPROT) is involved in resistance to 7-aminocholesterol [], while RTM1 (P40113 from SWISSPROT) confers resistance to an unknown toxic chemical in molasses []. These proteins may bind to the toxic substance, and thus prevent toxicity. They are not thought to be involved in the efflux of xenobiotics [].; GO: 0006950 response to stress, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00