Citrus Sinensis ID: 022867

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MYHLRRSAISSVRSGLSCALKSEKRLLFPVSSSASAVENSAKSFSTALRSDFARPASADSKQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHcccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccEEEEcccEEHHHHHHHHHHHHHHHHEEEEEEEcccccHHHHHHHHHHHHHcHHHHHHHcccEEEEEcccccHHHccccccEEEEcccccEEEEEEEEEEcccccEEEEEEEEEccccccEEEEEEEEEEccccEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcHHcHcccccEccccccHHHcccccccccHHccccccccccHHHHHccccccHHHccccccccEEEEccccccccccccccccHHHHccHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHccccEEcccccccccccccccEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEccccccEEEEEEEEEccccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
MYHLRRSAISSVRSGLSCALksekrllfpvsssasavENSAKSFSTALrsdfarpasadskqisngvsahfrgqcnrgyivnlrlpfqqmdsrvansktycsarsfasktskqgtetssepkkdistvedpfdaptynipekpvtftegASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIqddgqvrvrigspitgygqesrnraarqripnrvytdefgiEHVEVNfyirgphgagkVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Flexible Loop (DISEMBL)
myhlrrsaissvrsgLSCALKSEKRLLfpvsssasaveNSAKSFSTALRSDFARPASADSKQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSarsfasktskqgtetssepkkdistvedpfdaptyniPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKAlkriqddgqvrVRIGspitgygqesrnraarqripnrvytdefGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Low Complexity Region (SEG)
MYHLRRSAISSVRSGLSCALKSEKRLLFPVsssasavensaksFSTALRSDFARPASADSKQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSliilaglgvagaaayavFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Disordered region (IsUnstruct)
*******************************************************************SAHFRGQCNRGYIVNLRLPFQQM**********************************************YNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG**********RIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLML*********
Disordered Region (DISOPRED)
**************************************************************************************************TYC**************************************PEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG****************YTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYM*****
Disordered Region (DISEMBL)
***************LSCALKSEKRLLFPV*************FSTALRSDF***********SNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSAR*********************STVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGY*********RQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Disordered Region (DISPRO)
***************LS****SEKR************************SDFARPASADSKQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFA***************************PTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMP****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYHLRRSAISSVRSGLSCALKSEKRLLFPVSSSASAVENSAKSFSTALRSDFARPASADSKQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q1G3L1	269	Probable mitochondrial im	yes	no	0.680	0.736	0.752	1e-78
Q3SZV6	244	Mitochondrial import inne	yes	no	0.446	0.532	0.318	3e-13
Q5XKA2	232	Mitochondrial import inne	N/A	no	0.608	0.762	0.274	4e-13
Q9BVV7	248	Mitochondrial import inne	yes	no	0.450	0.528	0.296	4e-11
Q5U2X7	245	Mitochondrial import inne	yes	no	0.415	0.493	0.312	1e-10
Q4X1I8	237	Mitochondrial import inne	yes	no	0.450	0.552	0.294	2e-10
Q7S8S5	251	Mitochondrial import inne	N/A	no	0.391	0.454	0.303	1e-08
Q6CAQ9	269	Mitochondrial import inne	yes	no	0.439	0.475	0.285	3e-08
Q4HZ95	229	Mitochondrial import inne	yes	no	0.577	0.733	0.247	1e-07

>sp|Q1G3L1|TIM21_ARATH Probable mitochondrial import inner membrane translocase subunit TIM21 OS=Arabidopsis thaliana GN=TIM21 PE=1 SV=1

 Score =  293 bits (750), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 149/198 (75%), Positives = 175/198 (88%)

Query: 91  DSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGA 150
           ++R  N  +    RSFAS+TSK+     ++ KK+++TVEDPFD+PTY+IPEKPVTFTEGA
Sbjct: 72  EARPKNINSSYFTRSFASRTSKEPGNQQNKAKKEVTTVEDPFDSPTYHIPEKPVTFTEGA 131

Query: 151 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 210
           SYSL+ILAGLGVAGAA Y VFKELIF+PKEYK+F+KALKRIQDDGQVRVRIGSPI GYGQ
Sbjct: 132 SYSLVILAGLGVAGAAGYGVFKELIFQPKEYKVFDKALKRIQDDGQVRVRIGSPIKGYGQ 191

Query: 211 ESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIV 270
           E+RNRAARQRIPNRV+TDE G+EHVEVNFYIRGP GAGKV+TEMFKDK +K+WK+TYLIV
Sbjct: 192 ETRNRAARQRIPNRVFTDEDGVEHVEVNFYIRGPQGAGKVYTEMFKDKAEKEWKYTYLIV 251

Query: 271 EITSPYKAQLMLESYMPA 288
           EI +P  A+LMLESY+PA
Sbjct: 252 EILTPSPAKLMLESYLPA 269

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3SZV6|TIM21_BOVIN Mitochondrial import inner membrane translocase subunit Tim21 OS=Bos taurus GN=TIMM21 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 5/135 (3%)

Query: 151 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 210
           +Y +++L G+ + G   Y +F+EL       KI+ KAL++ +   +V    G P+ GYG+
Sbjct: 109 TYLIVVLIGISITGGLFYTIFRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGE 168

Query: 211 ESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYL 268
            +R R  RQ +    Y  + G++H+ V FYI+G  P   G V  E+ ++ E  +++F Y+
Sbjct: 169 VTR-RGRRQLVSFIEYKKD-GLKHMRVKFYIQGSEPGKQGTVHLEVKENPESGEYEFRYI 226

Query: 269 IVEITSPYKAQLMLE 283
            VE+  PY   +++E
Sbjct: 227 FVEL-EPYSRTIVVE 240

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Bos taurus (taxid: 9913)

>sp|Q5XKA2|TIM21_XENLA Mitochondrial import inner membrane translocase subunit Tim21 OS=Xenopus laevis GN=timm21 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 9/186 (4%)

Query: 100 YCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAG 159
           +C+ R  ++     G  +     K +S       AP  N   K        +Y +++L G
Sbjct: 51  FCAERPIST-----GCTSLQVKDKRVSVQSTSDGAPPQNASHKVKEAGRDFTYFIVVLIG 105

Query: 160 LGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQ 219
           +GV G   Y VF+EL       KI+ +AL++ +   +V    G PI GYG+ +R R  RQ
Sbjct: 106 IGVTGGLFYVVFEELFSSSSPSKIYGEALEKCRSHPEVIGAFGEPIKGYGETTR-RGRRQ 164

Query: 220 RIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYK 277
            + +  +  + GI+ + + FYI G  P   G V  E+ ++    +++F Y+ VEI +  +
Sbjct: 165 HVSHMEFVKD-GIKCMRLKFYIEGSEPRKQGTVHIEVKENPASGKYEFQYIFVEIDTYPR 223

Query: 278 AQLMLE 283
             +++E
Sbjct: 224 RTIIIE 229

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Xenopus laevis (taxid: 8355)

>sp|Q9BVV7|TIM21_HUMAN Mitochondrial import inner membrane translocase subunit Tim21 OS=Homo sapiens GN=TIMM21 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 4/135 (2%)

Query: 151 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 210
           +Y +++L G+ + G   Y +FKEL       KI+ +AL++ +   +V    G  + GYG+
Sbjct: 109 TYLIVVLFGISITGGLFYTIFKELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGE 168

Query: 211 ESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYL 268
            +R R  RQ +    Y  + G++H  V FYI G  P   G V+ ++ ++    ++ F Y+
Sbjct: 169 VTR-RGRRQHVRFTEYVKD-GLKHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYI 226

Query: 269 IVEITSPYKAQLMLE 283
            VEI S  +  +++E
Sbjct: 227 FVEIESYPRRTIIIE 241

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Homo sapiens (taxid: 9606)

>sp|Q5U2X7|TIM21_RAT Mitochondrial import inner membrane translocase subunit Tim21 OS=Rattus norvegicus GN=Timm21 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 4/125 (3%)

Query: 150 ASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG 209
            +Y +++L G+ + G+  Y +FKEL        I+ KAL + +   +V    G P+ GYG
Sbjct: 107 VTYLIVVLFGVSITGSLLYTIFKELFSSSSPNIIYGKALGKCRTHPEVISVFGEPVKGYG 166

Query: 210 QESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTY 267
           + SR R  RQ +    Y +  G++ + V FYI G  P   G V  E+ ++    Q+ F Y
Sbjct: 167 EMSR-RGRRQHVSFTEYANN-GLKRIRVKFYIEGSEPGKQGTVHAEVEENPRSGQFDFRY 224

Query: 268 LIVEI 272
           + V++
Sbjct: 225 IFVDV 229

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q4X1I8|TIM21_ASPFU Mitochondrial import inner membrane translocase subunit tim21 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=tim21 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 5/136 (3%)

Query: 141 EKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKI-FNKALKRIQDDGQVRV 199
           EK    T+ +   L+I+AG  + G   Y ++ E +F P      F KA++RI+DD +   
Sbjct: 74  EKVARATQQSLNFLVIVAGAVLTGGVFYLLYTE-VFSPNSRTWQFEKAVQRIKDDPRCTD 132

Query: 200 RIGS--PITGYGQESRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFK 256
            +G    I  YG+ + +R  R R I   ++ D  G EH++++F++ GP  +G V   M K
Sbjct: 133 LLGDRREIKAYGESTGSRWERNRPIATSMFKDRQGREHMKMHFHVEGPLNSGIVIVHMMK 192

Query: 257 DKEDKQWKFTYLIVEI 272
             +  +W++  L +++
Sbjct: 193 PLDKDEWEYLLLALDV 208

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Required to keep the TOM and the TIM23 complexes in close contact. At some point, it is released from the TOM23 complex to allow protein translocation into the mitochondrial matrix.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q7S8S5|TIM21_NEUCR Mitochondrial import inner membrane translocase subunit tim-21 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-21 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 8/122 (6%)

Query: 151 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRI--GSP--IT 206
           ++ L+IL G+ + G  AY +F ++     +   FN+A+ RI+ D +    +  G P  I 
Sbjct: 92  NFGLVIL-GVVLTGGIAYLLFTDVFSPESKTAYFNRAVDRIRADPRCVALLSPGDPKKIA 150

Query: 207 GYGQESRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKF 265
            +G+E+ N+  R R I   V  D  G+EH++++F++ GP G+G V   +   K+   W+ 
Sbjct: 151 AHGEETHNKWRRARPIAATVEKDNRGVEHLKMHFHVEGPRGSGVVGLHL--TKQPGHWEH 208

Query: 266 TY 267
            Y
Sbjct: 209 EY 210

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Required to keep the TOM and the TIM23 complexes in close contact. At some point, it is released from the TOM23 complex to allow protein translocation into the mitochondrial matrix.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q6CAQ9|TIM21_YARLI Mitochondrial import inner membrane translocase subunit TIM21 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TIM21 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 5/133 (3%)

Query: 145 TFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSP 204
            F + + Y  IILA LG+ G   Y +  EL+    + +IFN+A K I+ +  V   +G  
Sbjct: 102 VFFQLSWYLGIILAALGLFGLVWYYLIMELVMPSGDVRIFNRAFKEIEKNEDVMRVLGGQ 161

Query: 205 ITGYGQESRNRAARQRIP-NRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDK-- 261
           ++  G+    R  R + P ++   D++G EH+ +NFY+ G    G+   E+ ++ + K  
Sbjct: 162 LSSMGEGGGGRWGRNQPPVSKRGIDKYGREHIWMNFYVSGDINEGRAKLELVQNTDSKLS 221

Query: 262 --QWKFTYLIVEI 272
             ++ + Y +V+I
Sbjct: 222 SERFVYRYFVVDI 234

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Required to keep the TOM and the TIM23 complexes in close contact. At some point, it is released from the TOM23 complex to allow protein translocation into the mitochondrial matrix.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q4HZ95|TIM21_GIBZE Mitochondrial import inner membrane translocase subunit TIM21 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=TIM21 PE=3 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 91/186 (48%), Gaps = 18/186 (9%)

Query: 98  KTYCSARSFASKTSKQGT-ETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSL-- 154
           + + ++R +A++   QG   T   PK+   T   PF+   + +P K ++  E A+ +   
Sbjct: 23  RPFLASRYYATQ---QGLGATPRGPKRRAVT---PFNDNGH-VPWKQLSVAEKAARATQQ 75

Query: 155 -----IILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGS--PITG 207
                +IL GL + G   Y ++ ++     +   FN+A+ +I+ D ++   +G    I  
Sbjct: 76  SFNFGMILVGLMLTGGVGYFLWTDVFSPDSKISNFNRAVDKIRSDPRIIDVMGDSKKIAA 135

Query: 208 YGQESRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFT 266
           +G E+ N+  R R + +   TD  G +H+ ++FY+ GP   G     M K +    +++ 
Sbjct: 136 HGDETFNKWRRARPVASSETTDARGDQHIMMHFYVEGPKNNGVARLHMIKYRGHSDFEYK 195

Query: 267 YLIVEI 272
           YL V++
Sbjct: 196 YLFVDV 201

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Required to keep the TOM and the TIM23 complexes in close contact. At some point, it is released from the TOM23 complex to allow protein translocation into the mitochondrial matrix.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
225427488	314	PREDICTED: TIM21-like protein, mitochond	0.986	0.914	0.571	6e-90
224136346	304	predicted protein [Populus trichocarpa]	0.986	0.944	0.621	2e-89
224067574	238	predicted protein [Populus trichocarpa]	0.776	0.949	0.761	1e-88
255541104	312	Import inner membrane translocase subuni	0.975	0.910	0.593	4e-82
449446321	323	PREDICTED: uncharacterized protein LOC10	0.838	0.755	0.662	1e-79
449494116	323	PREDICTED: uncharacterized LOC101212713	0.646	0.582	0.824	2e-79
125543152	355	hypothetical protein OsI_10791 [Oryza sa	0.570	0.467	0.795	1e-78
297721981	265	Os03g0253800 [Oryza sativa Japonica Grou	0.635	0.698	0.724	2e-78
108707219	209	expressed protein [Oryza sativa Japonica	0.639	0.889	0.720	8e-78
222617352	355	hypothetical protein OsJ_36633 [Oryza sa	0.570	0.467	0.783	1e-77

>gi|225427488|ref|XP_002263208.1| PREDICTED: TIM21-like protein, mitochondrial [Vitis vinifera] gi|296088479|emb|CBI37470.3| unnamed protein product [Vitis vinifera]

 Score =  336 bits (862), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 180/315 (57%), Positives = 215/315 (68%), Gaps = 28/315 (8%)

Query: 1   MYHLRRSAISSVRSGLSCALKSEKRLLFPVSSSASAVENSA--KSFSTAL--RSDFARPA 56
           M+H+++ A+SS++   S  +KS   +   V    S   + A    FS+ +  R+ F  P 
Sbjct: 1   MHHMKKHAVSSLKRRWSGIIKSPNGVCSLVEHKPSMCVSDAGLSGFSSIVSERTAF-NPG 59

Query: 57  SADSKQI-------------SNGVSAHFRG----------QCNRGYIVNLRLPFQQMDSR 93
           + +  Q+             +N +    RG             R  IV    P++ +++ 
Sbjct: 60  TTNRLQVLIKSRNLRQSAVNANCIIKDVRGVDGTSVLSARWQTRERIVGFCSPYRPIETH 119

Query: 94  VANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYS 153
             ++   C ARS AS  SK   E  SE +KDISTVEDPFDAPTYNIPEKPVTF EGASYS
Sbjct: 120 GKSTVVPCFARSCASTASKSPEEKQSETRKDISTVEDPFDAPTYNIPEKPVTFAEGASYS 179

Query: 154 LIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESR 213
           +IIL GLG+A AA YAVFKELIFEPKEYKIF KALKR+Q+DGQVRVRIGSPITGYGQESR
Sbjct: 180 VIILVGLGIAAAAGYAVFKELIFEPKEYKIFGKALKRVQEDGQVRVRIGSPITGYGQESR 239

Query: 214 NRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEIT 273
           NRAARQRI NR++TDE G+EHVEVNFYIRGPHGAGKV+TEMFKDK DKQWKFTYLI EI 
Sbjct: 240 NRAARQRISNRIWTDEDGVEHVEVNFYIRGPHGAGKVYTEMFKDKVDKQWKFTYLIAEIK 299

Query: 274 SPYKAQLMLESYMPA 288
           SP  AQLMLESY+PA
Sbjct: 300 SPSPAQLMLESYVPA 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136346|ref|XP_002326838.1| predicted protein [Populus trichocarpa] gi|222835153|gb|EEE73588.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 187/301 (62%), Positives = 228/301 (75%), Gaps = 14/301 (4%)

Query: 1   MYHLRRSAISSVRSGLSCALKSEKRLLFPVS-------SSASAVENSA--KSFSTALRSD 51
           M H+RR +   +RS     L  E++++  VS       S++ A + SA   S +   +SD
Sbjct: 1   MQHIRRCS-GFLRSQNGLPLFLERKIVKGVSDVGLASFSTSMAAQRSALGNSATRLPKSD 59

Query: 52  FARPASADSKQISN----GVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFA 107
           + R  ++++  ++     G+ A + G+ NR  +V+L  PFQ M++   ++   C ARSFA
Sbjct: 60  YVRHFASNANHLTKVRWLGIPAMYGGKSNRECLVSLGSPFQIMENHGGSTINICVARSFA 119

Query: 108 SKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAA 167
           SK SK+ T   SE +KD+STVEDPFDAPTYNIPEKPVTFTEGASYS+IILAGLGVA AAA
Sbjct: 120 SKASKKETRNQSETRKDLSTVEDPFDAPTYNIPEKPVTFTEGASYSIIILAGLGVAAAAA 179

Query: 168 YAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYT 227
           YAVFKELIFEPKEYKIFNKALKRIQDD QVRVRIGSPITGYGQESRNRAARQRIPNR++T
Sbjct: 180 YAVFKELIFEPKEYKIFNKALKRIQDDSQVRVRIGSPITGYGQESRNRAARQRIPNRIFT 239

Query: 228 DEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMP 287
           DE G+EHV++NFYIRGPHGAGKV  EMFKDK DKQWK+TYLIVE   P ++QL+LESYMP
Sbjct: 240 DEDGVEHVQINFYIRGPHGAGKVSAEMFKDKVDKQWKYTYLIVETMQPSRSQLILESYMP 299

Query: 288 A 288
           A
Sbjct: 300 A 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067574|ref|XP_002302508.1| predicted protein [Populus trichocarpa] gi|222844234|gb|EEE81781.1| predicted protein [Populus trichocarpa]

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 172/226 (76%), Positives = 193/226 (85%)

Query: 66  GVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDI 125
           G+ A + GQ NR Y+V+LR  FQ M++   ++   C ARSFASK SK+ T   SE KKD+
Sbjct: 12  GIPAIYGGQPNREYLVSLRSSFQIMETHGESTINICFARSFASKASKKETHKQSETKKDV 71

Query: 126 STVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFN 185
           STVEDPFDAPTYNIPEKPVTFTEGASYS+IILAGL VA AAAYAVFKELIFEPKEYKIFN
Sbjct: 72  STVEDPFDAPTYNIPEKPVTFTEGASYSIIILAGLAVAAAAAYAVFKELIFEPKEYKIFN 131

Query: 186 KALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPH 245
           KALKRIQDD QVRVRIGSPITGYGQESRNRAARQRIPNR++TDE G+EHV++NFYIRGPH
Sbjct: 132 KALKRIQDDSQVRVRIGSPITGYGQESRNRAARQRIPNRIFTDEDGVEHVQINFYIRGPH 191

Query: 246 GAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA 291
           GAGKV  EMFKDK DKQWK+TYLIVE+  P ++QL+LESYMPA  A
Sbjct: 192 GAGKVSAEMFKDKVDKQWKYTYLIVEVMQPSRSQLILESYMPAPVA 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541104|ref|XP_002511616.1| Import inner membrane translocase subunit tim21, mitochondrial precursor, putative [Ricinus communis] gi|223548796|gb|EEF50285.1| Import inner membrane translocase subunit tim21, mitochondrial precursor, putative [Ricinus communis]

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 184/310 (59%), Positives = 217/310 (70%), Gaps = 26/310 (8%)

Query: 1   MYHLRRSAIS---------SVRSGLSCALKSE--KRL----LFPVSSSAS----AVENSA 41
           M H RRSA+S           ++GLS  L+ +  KR+    L   SSSA+    AV NS 
Sbjct: 1   MEHFRRSAMSLRSRCSDLFECQNGLSSVLERKLIKRVTDVGLATFSSSATSERAAVNNST 60

Query: 42  KSFSTALRSDFARPASADSKQISNGV---SAHFRGQCNRGYIVNLRLPFQQMDSRVANSK 98
           K      +  + R    ++      +   + ++  QC    I  L   FQ +     ++ 
Sbjct: 61  KKLPRDFKLGYVRRPVGEANHGPKDILCANGNYDKQC----IAGLGSQFQLVKLLGGSTT 116

Query: 99  TYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILA 158
               ARSFASK SK+  E +SE +K++STVEDPFDAPTYNIPEKPVTFTEGASYS+IILA
Sbjct: 117 NSWFARSFASKASKKTGEATSETRKEVSTVEDPFDAPTYNIPEKPVTFTEGASYSIIILA 176

Query: 159 GLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAAR 218
           GLGVA AA YAVFKELIFEPKEYKIFNKALKRIQDD QVRVRIGSPITGYGQESRNRAAR
Sbjct: 177 GLGVAAAAGYAVFKELIFEPKEYKIFNKALKRIQDDAQVRVRIGSPITGYGQESRNRAAR 236

Query: 219 QRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKA 278
           QRIPN++YTDE G+EHV VNFYIRGPHGAGKV  EMFKDK DK+WK+TYLIV+   P ++
Sbjct: 237 QRIPNKIYTDEDGVEHVLVNFYIRGPHGAGKVSAEMFKDKVDKEWKYTYLIVQFLQPNQS 296

Query: 279 QLMLESYMPA 288
           QL+LESYMPA
Sbjct: 297 QLILESYMPA 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446321|ref|XP_004140920.1| PREDICTED: uncharacterized protein LOC101212713 [Cucumis sativus]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 171/258 (66%), Positives = 196/258 (75%), Gaps = 14/258 (5%)

Query: 43  SFSTALRSDFARPASADSKQIS-----------NGVSAHFRGQCNRGYIVNLRLPFQQMD 91
           +++T++R   A   S  SKQ +            G+    R Q  R  +VN       + 
Sbjct: 68  TYATSVRELLAPLKSGISKQSAVYVCDIPKAALGGMPVLSRWQDARASVVNFST--LGVT 125

Query: 92  SRVANS-KTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGA 150
           SR   S +  C AR  +SK+S++  +T SE KK+ISTVEDPFDAPTYNIPEKPVTF EGA
Sbjct: 126 SRCDTSARGPCFARFMSSKSSEKRGQTESESKKEISTVEDPFDAPTYNIPEKPVTFAEGA 185

Query: 151 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 210
           SYS IILAGLGVA AA YAVFKELIF+PKEYKIF+KALKRIQDD QVRVRIGSPITGYGQ
Sbjct: 186 SYSFIILAGLGVAAAAGYAVFKELIFQPKEYKIFDKALKRIQDDSQVRVRIGSPITGYGQ 245

Query: 211 ESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIV 270
           E+RNRAARQRIPNRV+TDE G+E VEVNFYIRGPHGAGKV+TEMFKD+ DKQWKFTYLIV
Sbjct: 246 ETRNRAARQRIPNRVWTDEDGVERVEVNFYIRGPHGAGKVYTEMFKDQVDKQWKFTYLIV 305

Query: 271 EITSPYKAQLMLESYMPA 288
           E+ SP  AQL+LESYMPA
Sbjct: 306 EVKSPSPAQLILESYMPA 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494116|ref|XP_004159453.1| PREDICTED: uncharacterized LOC101212713 [Cucumis sativus]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/188 (82%), Positives = 170/188 (90%)

Query: 101 CSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGL 160
           C AR  +SK+S++  +T SE KK+ISTVEDPFDAPTYNIPEKPVTF EGASYS IILAGL
Sbjct: 136 CFARFMSSKSSEKRGQTESESKKEISTVEDPFDAPTYNIPEKPVTFAEGASYSFIILAGL 195

Query: 161 GVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQR 220
           GVA AA YAVFKELIF+PKEYKIF+KALKRIQDD QVRVRIGSPITGYGQE+RNRAARQR
Sbjct: 196 GVAAAAGYAVFKELIFQPKEYKIFDKALKRIQDDSQVRVRIGSPITGYGQETRNRAARQR 255

Query: 221 IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQL 280
           IPNRV+TDE G+E VEVNFYIRGPHGAGKV+TEMFKD+ DKQWKFTYLIVE+ SP  AQL
Sbjct: 256 IPNRVWTDEDGVERVEVNFYIRGPHGAGKVYTEMFKDQVDKQWKFTYLIVEVKSPSPAQL 315

Query: 281 MLESYMPA 288
           +LESYMPA
Sbjct: 316 ILESYMPA 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125543152|gb|EAY89291.1| hypothetical protein OsI_10791 [Oryza sativa Indica Group]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 132/166 (79%), Positives = 150/166 (90%)

Query: 123 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 182
           KD+ TVEDPFD+PTYNIPEKPVTF EGASYSL+I+AGLG+A  A YAVFKELIFEPKEYK
Sbjct: 190 KDLKTVEDPFDSPTYNIPEKPVTFAEGASYSLVIVAGLGIAAVAGYAVFKELIFEPKEYK 249

Query: 183 IFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIR 242
           IF KAL R+Q+D QV  +IG P+TGYG ESRNRAARQRIPN+V+TDE G+EHVEVNFYIR
Sbjct: 250 IFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPNKVWTDEDGVEHVEVNFYIR 309

Query: 243 GPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPA 288
           GPHGAGKV++EMFKDK D+ WKFTYLIVEI SP++AQLMLESY+PA
Sbjct: 310 GPHGAGKVYSEMFKDKNDRSWKFTYLIVEIVSPHRAQLMLESYVPA 355

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297721981|ref|NP_001173354.1| Os03g0253800 [Oryza sativa Japonica Group] gi|108707218|gb|ABF95013.1| expressed protein [Oryza sativa Japonica Group] gi|255674378|dbj|BAH92082.1| Os03g0253800 [Oryza sativa Japonica Group]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 156/185 (84%)

Query: 104 RSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVA 163
           R  AS +++   +   E  KD+ TVEDPFD+PTYNIPEKPVTF EGASYSL+I+AGLG+A
Sbjct: 81  RPSASYSTQASEQNPKEGTKDLKTVEDPFDSPTYNIPEKPVTFAEGASYSLVIVAGLGIA 140

Query: 164 GAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPN 223
             A YAVFKELIFEPKEYKIF KAL R+Q+D QV  +IG P+TGYG ESRNRAARQRIPN
Sbjct: 141 AVAGYAVFKELIFEPKEYKIFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPN 200

Query: 224 RVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 283
           +V+TDE G+EHVEVNFYIRGPHGAGKV++EMFKD  D+ WKFTYLIVEI SP++ QLMLE
Sbjct: 201 KVWTDEDGVEHVEVNFYIRGPHGAGKVYSEMFKDNNDRSWKFTYLIVEIVSPHRVQLMLE 260

Query: 284 SYMPA 288
           SY+PA
Sbjct: 261 SYVPA 265

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108707219|gb|ABF95014.1| expressed protein [Oryza sativa Japonica Group]

 Score =  296 bits (757), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 156/186 (83%)

Query: 103 ARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGV 162
            R  AS +++   +   E  KD+ TVEDPFD+PTYNIPEKPVTF EGASYSL+I+AGLG+
Sbjct: 24  VRPSASYSTQASEQNPKEGTKDLKTVEDPFDSPTYNIPEKPVTFAEGASYSLVIVAGLGI 83

Query: 163 AGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIP 222
           A  A YAVFKELIFEPKEYKIF KAL R+Q+D QV  +IG P+TGYG ESRNRAARQRIP
Sbjct: 84  AAVAGYAVFKELIFEPKEYKIFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIP 143

Query: 223 NRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLML 282
           N+V+TDE G+EHVEVNFYIRGPHGAGKV++EMFKD  D+ WKFTYLIVEI SP++ QLML
Sbjct: 144 NKVWTDEDGVEHVEVNFYIRGPHGAGKVYSEMFKDNNDRSWKFTYLIVEIVSPHRVQLML 203

Query: 283 ESYMPA 288
           ESY+PA
Sbjct: 204 ESYVPA 209

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222617352|gb|EEE53484.1| hypothetical protein OsJ_36633 [Oryza sativa Japonica Group]

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 130/166 (78%), Positives = 148/166 (89%)

Query: 123 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 182
           KD+ TVEDPFD+PTYNIPEKPVTF EGASYSL+I+AGLG+A  A YAVFKELIFEPKEYK
Sbjct: 190 KDLKTVEDPFDSPTYNIPEKPVTFAEGASYSLVIVAGLGIAAVAGYAVFKELIFEPKEYK 249

Query: 183 IFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIR 242
           IF KAL R+Q+D QV  +IG P+TGYG ESRNRAARQRIPN+V+TDE G+EHVEVNFYIR
Sbjct: 250 IFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPNKVWTDEDGVEHVEVNFYIR 309

Query: 243 GPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPA 288
           GPHGAGKV++EMFKD  D+ WKFTYLIVEI SP++ QLMLESY+PA
Sbjct: 310 GPHGAGKVYSEMFKDNNDRSWKFTYLIVEIVSPHRVQLMLESYVPA 355

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:1009023383	269	SD3 "AT4G00026" [Arabidopsis t	0.831	0.899	0.596	4.8e-71
UNIPROTKB|F1SNL5	243	LOC100622200 "Uncharacterized	0.378	0.452	0.330	2.4e-11
UNIPROTKB|E2R117	244	TIMM21 "Uncharacterized protei	0.381	0.454	0.321	2.9e-11
UNIPROTKB|F1MRI2	244	TIMM21 "Mitochondrial import i	0.378	0.450	0.330	7.4e-11
UNIPROTKB|Q3SZV6	244	TIMM21 "Mitochondrial import i	0.378	0.450	0.330	1.5e-10
ZFIN|ZDB-GENE-120709-89	238	si:dkey-118j18.1 "si:dkey-118j	0.381	0.466	0.313	5.5e-09
FB|FBgn0031708	236	CG7382 [Drosophila melanogaste	0.487	0.601	0.282	9.6e-09
WB|WBGene00018934	213	F56B3.11 [Caenorhabditis elega	0.323	0.441	0.312	9.8e-09
UNIPROTKB|E1BTY5	231	C2H18orf55 "Uncharacterized pr	0.381	0.480	0.304	9.4e-08
UNIPROTKB|Q9BVV7	248	TIMM21 "Mitochondrial import i	0.381	0.447	0.304	9.8e-08

TAIR|locus:1009023383 SD3 "AT4G00026" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 148/248 (59%), Positives = 180/248 (72%)

Query:    44 FSTALRSDFARPASADSKQI-SNGVSAHFRGQCNRGYIVNLRLPFQQM--DSRVANSKTY 100
             FS+A +     P S  SK++ SN   +      N G +   R P   +  ++R  N  + 
Sbjct:    25 FSSATQPCSGIPKS--SKRVFSNSFLSKDSTGAN-GLLFRFRNPQASICTEARPKNINSS 81

Query:   101 CSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSXXXXXXX 160
                RSFAS+TSK+     ++ KK+++TVEDPFD+PTY+IPEKPVTFTEGASYS       
Sbjct:    82 YFTRSFASRTSKEPGNQQNKAKKEVTTVEDPFDSPTYHIPEKPVTFTEGASYSLVILAGL 141

Query:   161 XXXXXXXXXXFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQR 220
                       FKELIF+PKEYK+F+KALKRIQDDGQVRVRIGSPI GYGQE+RNRAARQR
Sbjct:   142 GVAGAAGYGVFKELIFQPKEYKVFDKALKRIQDDGQVRVRIGSPIKGYGQETRNRAARQR 201

Query:   221 IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQL 280
             IPNRV+TDE G+EHVEVNFYIRGP GAGKV+TEMFKDK +K+WK+TYLIVEI +P  A+L
Sbjct:   202 IPNRVFTDEDGVEHVEVNFYIRGPQGAGKVYTEMFKDKAEKEWKYTYLIVEILTPSPAKL 261

Query:   281 MLESYMPA 288
             MLESY+PA
Sbjct:   262 MLESYLPA 269

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0090351 "seedling development" evidence=IMP

UNIPROTKB|F1SNL5 LOC100622200 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 167 (63.8 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 38/115 (33%), Positives = 64/115 (55%)

Query:   171 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 230
             F+EL       KI+ KAL++ +   +V    G P+ GYG+ +R R  RQ +    Y  + 
Sbjct:   128 FRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGETTR-RGRRQHVSFIEYVKD- 185

Query:   231 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 283
             G++H+ V FYI+G  P   G V  E+ ++ E  +++F Y+ VE+  PY   +++E
Sbjct:   186 GLKHMRVKFYIQGSEPGKQGTVHLEVKENPESGEYEFRYIFVEL-EPYSRTIVIE 239

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|E2R117 TIMM21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
 Identities = 37/115 (32%), Positives = 62/115 (53%)

Query:   171 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 230
             FKEL       KI+ KAL++ +   +V    G P+ GYG+ +R R  RQ +    Y  + 
Sbjct:   128 FKELFSSSSPNKIYGKALEKCRSHPEVISIFGEPVKGYGEATR-RGRRQHVSFIEYVKD- 185

Query:   231 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 283
             G++H+ V FYI G  P   G V  E+ ++ E  +++F Y+ VE+    +  +++E
Sbjct:   186 GLKHMRVKFYIEGSEPGKQGTVHLEVKENPESGEYEFRYIFVELEPHPRRTIIIE 240

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|F1MRI2 TIMM21 "Mitochondrial import inner membrane translocase subunit Tim21" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 38/115 (33%), Positives = 64/115 (55%)

Query:   171 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 230
             F+EL       KI+ KAL++ +   +V    G P+ GYG+ +R R  RQ +    Y  + 
Sbjct:   129 FRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGEVTR-RGRRQHVSFIEYKKD- 186

Query:   231 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 283
             G++H+ V FYI+G  P   G V  E+ ++ E  +++F Y+ VE+  PY   +++E
Sbjct:   187 GLKHMRVKFYIQGSEPGKQGTVHLEVKENPESGEYEFRYIFVEL-EPYSRTIVVE 240

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|Q3SZV6 TIMM21 "Mitochondrial import inner membrane translocase subunit Tim21" [Bos taurus (taxid:9913)]

 Score = 162 (62.1 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 38/115 (33%), Positives = 64/115 (55%)

Query:   171 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 230
             F+EL       KI+ KAL++ +   +V    G P+ GYG+ +R R  RQ +    Y  + 
Sbjct:   129 FRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGEVTR-RGRRQLVSFIEYKKD- 186

Query:   231 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 283
             G++H+ V FYI+G  P   G V  E+ ++ E  +++F Y+ VE+  PY   +++E
Sbjct:   187 GLKHMRVKFYIQGSEPGKQGTVHLEVKENPESGEYEFRYIFVEL-EPYSRTIVVE 240

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0033617 "mitochondrial respiratory chain complex IV assembly" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0030150 "protein import into mitochondrial matrix" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-120709-89 si:dkey-118j18.1 "si:dkey-118j18.1" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 5.5e-09, P = 5.5e-09
 Identities = 36/115 (31%), Positives = 64/115 (55%)

Query:   171 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 230
             F+EL       KI+ KA +R +   +V    G PI G+G+ SR R  RQ++ +  Y  + 
Sbjct:   123 FQELFSSSSPSKIYGKAFERCRSHPEVIGAFGEPIKGFGETSR-RGRRQQVSHLEYMKD- 180

Query:   231 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 283
             G++++ + FYI G  P   G V +E  ++ E  +++F Y+ VEI +  +  +++E
Sbjct:   181 GLKYMRLKFYIEGSEPGLRGTVHSESKENPETGKYEFRYIFVEIDTYPRRTIVIE 235

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

FB|FBgn0031708 CG7382 [Drosophila melanogaster (taxid:7227)]

 Score = 148 (57.2 bits), Expect = 9.6e-09, P = 9.6e-09
 Identities = 41/145 (28%), Positives = 68/145 (46%)

Query:   139 IPEKPVTFTEGASYSXXXXXXXXXXXXXXXXXFKELIFEPKEYKIFNKALKRIQDDGQVR 198
             I EK    T+ ASY+                 F+EL        I+  AL+R+ +D +V+
Sbjct:    65 IGEKIKENTKTASYTAIIIAGLGVTCVMFFAIFRELFSSESPNNIYADALRRVVEDPRVQ 124

Query:   199 VRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDK 258
               IG+PI G+G+ SR R  RQ + +  Y +  G  H+ + FY++G      V  E  +  
Sbjct:   125 DAIGAPIKGFGETSR-RGRRQHVAHSSY-ERNGKPHMRMQFYVQGLRNKATVQLESRRSD 182

Query:   259 EDKQWKFTYLIVEITSPYKAQLMLE 283
               K  ++ YL V++    +  ++LE
Sbjct:   183 SGKL-EYRYLFVQLDHYPRTTIILE 206

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

WB|WBGene00018934 F56B3.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 145 (56.1 bits), Expect = 9.8e-09, P = 9.8e-09
 Identities = 30/96 (31%), Positives = 53/96 (55%)

Query:   173 ELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGI 232
             E   +     IFNKAL  ++DDG+ +   G+ I G+G+E+ +R  R+ + +  Y  + G+
Sbjct:   104 EFFAQDSPQTIFNKALALVRDDGRCQEIFGASIAGFGEET-SRGRRRHVAHHKYEKD-GM 161

Query:   233 EHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYL 268
             + + V F+++G    G    EM +   D QW+F Y+
Sbjct:   162 QRIRVLFHVKGDRDEGIAQAEMEQRDGDWQWRFLYV 197

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BTY5 C2H18orf55 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 140 (54.3 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 35/115 (30%), Positives = 61/115 (53%)

Query:   171 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 230
             FKEL       KI+  AL++ +   +V    G PI GYG+ +R R  RQ + +  Y  + 
Sbjct:   116 FKELFSSSSPSKIYGDALEKCRSHPEVIGVFGEPIKGYGEATR-RGRRQFVSHIEYVKD- 173

Query:   231 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 283
             G++H+ + FYI G  P   G V  E+ ++ E  ++   Y+ V++ S  +  +++E
Sbjct:   174 GLKHMRLKFYIEGSEPGKQGTVHVEVKENPERGRFDVRYIFVDVDSYPRRTIVVE 228

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

UNIPROTKB|Q9BVV7 TIMM21 "Mitochondrial import inner membrane translocase subunit Tim21" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 9.8e-08, P = 9.8e-08
 Identities = 35/115 (30%), Positives = 60/115 (52%)

Query:   171 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 230
             FKEL       KI+ +AL++ +   +V    G  + GYG+ +R R  RQ +    Y  + 
Sbjct:   129 FKELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGEVTR-RGRRQHVRFTEYVKD- 186

Query:   231 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 283
             G++H  V FYI G  P   G V+ ++ ++    ++ F Y+ VEI S  +  +++E
Sbjct:   187 GLKHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYIFVEIESYPRRTIIIE 241

GO:0016021 "integral to membrane" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IMP

GO:0033617 "mitochondrial respiratory chain complex IV assembly" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1G3L1	TIM21_ARATH	No assigned EC number	0.7525	0.6804	0.7360	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
pfam08294	145	pfam08294, TIM21, TIM21	4e-24
pfam08695	117	pfam08695, Coa1, Cytochrome oxidase complex assemb	8e-04

>gnl|CDD|116878 pfam08294, TIM21, TIM21

 Score = 94.7 bits (236), Expect = 4e-24
 Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 6/131 (4%)

Query: 146 FTEGASYSLIILAGLGVAGAAAYAVFKELIFEPK-EYKIFNKALKRIQDDGQVRVRIGSP 204
            T    Y +I+L G+GV G   Y +F EL F P  + +IFN+A++ ++++ +VR  +G  
Sbjct: 5   ATTFTFYFIIVLGGVGVTGLVIYLIFSEL-FSPSGDTQIFNRAVELVEENERVRDLLGER 63

Query: 205 ITGYGQESRN---RAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDK 261
           I  YG+E+R       R  +  R Y D+ G EH+ + F++ GP   G V  E+ +  +  
Sbjct: 64  IKAYGEETRRGRWTRNRPIVSTREY-DKDGKEHIRMQFHVEGPRKKGTVHLELVESDDSG 122

Query: 262 QWKFTYLIVEI 272
           Q++F YL V++
Sbjct: 123 QYEFRYLYVDV 133

TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane. Length = 145

>gnl|CDD|219973 pfam08695, Coa1, Cytochrome oxidase complex assembly protein 1

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 28/126 (22%)

Query: 154 LIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPIT---GY-- 208
              +  +GV  A AY    E         I+   L +++   +VR  +G  I    G+  
Sbjct: 3   TFAVFAVGVGAALAYIFNYEK----TSSPIYRSTLYQLRRSPEVRELLGENIPFKSGWPW 58

Query: 209 --GQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFT 266
             G  +  +                   ++++F ++G  G G V+    ++ +   W   
Sbjct: 59  ISGSINTVQG-----------------RIDLSFPVKGSKGEGTVYLTASRESKRGPWHIH 101

Query: 267 YLIVEI 272
              + +
Sbjct: 102 EWSLTV 107

Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N-terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
PF08294	145	TIM21: TIM21; InterPro: IPR013261 TIM21 interacts	100.0
KOG4836	215	consensus Uncharacterized conserved protein [Funct	100.0
PF08695	116	Coa1: Cytochrome oxidase complex assembly protein	99.61

>PF08294 TIM21: TIM21; InterPro: IPR013261 TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane []

Probab=100.00  E-value=1.9e-49  Score=339.68  Aligned_cols=142  Identities=39%  Similarity=0.653  Sum_probs=78.4

Q ss_pred             CceeeeecceeeeehhhHHHHHhhhhheeeehhccCCcchHHHHHHHHHHhhchhHHHhhCCCcccccccCc-ccccccc
Q 022867          142 KPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESR-NRAARQR  220 (291)
Q Consensus       142 Kv~rat~~s~y~~VIl~Glgltg~v~Y~l~sELf~s~spt~iYn~Al~rIk~DprV~~~LGePIkayGe~s~-nrwrRnr  220 (291)
                      |++|++++++|++|||+|+||+|+++|+|++|||++++|+.+||+|+++|++||+|+++||+||++||++++ +||+|||
T Consensus         1 Kv~~~~~~~~~~~vil~G~gl~g~v~Y~l~sELFs~~s~~~ifn~A~~~i~~d~~v~~~LG~~ikayGe~~~~~Rw~R~R   80 (145)
T PF08294_consen    1 KVKRATKQTSYFGVILAGLGLTGLVIYALFSELFSPSSPTRIFNRAVDRIKKDPRVQDLLGEPIKAYGEETGRNRWRRNR   80 (145)
T ss_dssp             -------------------------------------HHHHHHHHHHHHHHH-HHHHHHT----EEEE-EEE-SS-EEE-
T ss_pred             ChheehcceeeeEeeeehHHHHHHhHHHHhHHHhCCCCchHHHHHHHHHHhcCHHHHHHhCCCeEEecCCCCCCcccccC
Confidence            799999999999999999999999999999999998899999999999999999999999999999999998 8999998


Q ss_pred             -ccceEEecCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEecCC
Q 022867          221 -IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESY  285 (291)
Q Consensus       221 -I~~~~y~D~dG~eHm~m~F~VeGpkg~G~V~lEm~K~~~~g~weYryL~VdV~g~~r~~IiLEd~  285 (291)
                       +.++.+.|+||++||+|+|||+||+|+|+||+||+|++.+++|||+||+||++|++  +|||||+
T Consensus        81 ~~~s~~~~d~~G~eh~~m~F~V~G~~~~G~V~~e~~k~~~~~~~e~~yL~vdv~g~~--ri~l~dn  144 (145)
T PF08294_consen   81 PIVSHREYDKDGREHMRMKFYVEGPRGKGVVHLEMVKDDGSGEYEYRYLYVDVPGHK--RIYLEDN  144 (145)
T ss_dssp             ---EEEEE-TTS-EEEEEEEEEE-SS-EEEEEEEEE--SS-SS-EEEEEEEE-TTS----EEEE--
T ss_pred             CccceEEEcCCCCEEEEEEEEEEeCCCeEEEEEEEEECCCCCCeeEEEEEEecCCCe--EEEEEcC
Confidence             66666679999999999999999999999999999997679999999999999976  9999985

; PDB: 2CIU_A.

>KOG4836 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7.3e-40  Score=293.20  Aligned_cols=146  Identities=30%  Similarity=0.580  Sum_probs=138.0

Q ss_pred             CCCCceeeeecceeeeehhhHHHHHhhhhheeeehhccCCcchHHHHHHHHHHhhchhHHHhhCCCcccccccCcccccc
Q 022867          139 IPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAAR  218 (291)
Q Consensus       139 i~eKv~rat~~s~y~~VIl~Glgltg~v~Y~l~sELf~s~spt~iYn~Al~rIk~DprV~~~LGePIkayGe~s~nrwrR  218 (291)
                      .+.||++++.+++|+.+||+|+||+|+++|+|++|||++.+|+.+||+||++|++||+|+.++|++||||||+++ |+||
T Consensus        68 ~~gkVke~s~nt~~~~iVI~GiGv~g~~iY~i~~ElFs~~sp~~ifn~Al~~v~~~~~~~~ifG~~iKgfGE~t~-rgRR  146 (215)
T KOG4836|consen   68 FGGKVKEASSNTFYYIIVIAGIGVTGAFIYAIFGELFSSSSPQTIFNRALELVRANPEVQGIFGESIKGFGEETR-RGRR  146 (215)
T ss_pred             CccchhhccccceeeeeeeeeccHHHHhHHHHHHHHhcCCCcHHHHHHHHHHHhcChHHhhHhhhhhhhhhhhhc-Cccc
Confidence            345999999999999999999999999999999999998899999999999999999999999999999999998 6789


Q ss_pred             ccccceEEecCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEecCCCCC
Q 022867          219 QRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPA  288 (291)
Q Consensus       219 nrI~~~~y~D~dG~eHm~m~F~VeGpkg~G~V~lEm~K~~~~g~weYryL~VdV~g~~r~~IiLEd~~p~  288 (291)
                      +||+|..| |+||.+|++|+|||+|.+.+|+|+++++.+  +|+|+|+||||||+++++..|++||+-|.
T Consensus       147 ~hVa~~~y-dk~G~~h~~m~Fhv~g~~~~g~v~~~~k~~--~g~~~~~flfVdv~~ypr~tii~~dnr~~  213 (215)
T KOG4836|consen  147 QHVAHHKY-DKDGMEHLRMQFHVEGSEPQGHVFARLKEV--DGDYEWDFLFVDVARYPRTTIILEDNRVR  213 (215)
T ss_pred             ceeeeeee-ecCCceEEEEEEEEEcCCcccchhhhhhcc--CCCCceeEEEEecCCCceeEEEccCCccc
Confidence            99999999 899999999999999999999999999876  78888888999999999999999999664

>PF08695 Coa1: Cytochrome oxidase complex assembly protein 1; InterPro: IPR014807 Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly

Probab=99.61  E-value=6.6e-15  Score=120.06  Aligned_cols=106  Identities=25%  Similarity=0.394  Sum_probs=79.9

Q ss_pred             HHHHhhhhheeeehhccCCcchHHHHHHHHHHhhchhHHHhhCC--Ccccccc-cCccccccccccceEEecCCCceEEE
Q 022867          160 LGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGS--PITGYGQ-ESRNRAARQRIPNRVYTDEFGIEHVE  236 (291)
Q Consensus       160 lgltg~v~Y~l~sELf~s~spt~iYn~Al~rIk~DprV~~~LGe--PIkayGe-~s~nrwrRnrI~~~~y~D~dG~eHm~  236 (291)
                      +++++.++|.+..++    ..+.+|+.|++.+++||+|+++||+  ||+.... .+++          ....   ..++.
T Consensus         8 ~~~~~~~~~~~~~~~----~~s~~y~~al~~l~~~~~v~~~LGe~ipi~~~~~~i~G~----------~~~~---~g~a~   70 (116)
T PF08695_consen    8 IGWGVFLFYAINSEK----KSSEYYKEALEQLRSNPEVVEALGENIPIKDGWPWISGS----------INTS---KGRAD   70 (116)
T ss_pred             HHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhCHHHHHHcCCCCCcccCcccccce----------eecc---CcEEE
Confidence            333345666666665    3567899999999999999999999  8886542 2331          2222   44688


Q ss_pred             EEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEecC
Q 022867          237 VNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLES  284 (291)
Q Consensus       237 m~F~VeGpkg~G~V~lEm~K~~~~g~weYryL~VdV~g~~r~~IiLEd  284 (291)
                      ++|+|+||+++|+||+++.++...+.|+|..|.|.++  ..++|.|.|
T Consensus        71 ~~~pV~G~k~~G~v~~~a~r~~~~~~W~~~~~~v~~~--~g~~I~L~~  116 (116)
T PF08695_consen   71 LSFPVKGPKGKGTVYVEATRSGGKDPWEILRLEVEID--DGQVIDLLD  116 (116)
T ss_pred             EEEEEEcCCCcEEEEEEEEecCCCCceEEEEEEEEeC--CCCEEeCcC
Confidence            9999999999999999999985555699999999999  345777654

It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence []. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
2ciu_A	127	TIM21P, import inner membrane translocase subunit	4e-26

>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae} Length = 127

 Score = 98.9 bits (246), Expect = 4e-26
 Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 182 KIFNKALKRIQDDGQVRVRI--------GSPITGYGQE-SRNRAARQR-IPNRVYTDEFG 231
           ++FN+A+  ++ +  +R  +           +  YG+  + ++  R R I +    D+ G
Sbjct: 9   QLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWTRNRPIVSTKKLDKEG 68

Query: 232 IEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSP 275
             H  + F++        V  E  + K++ Q  F  + V++   
Sbjct: 69  RTHHYMRFHVESKKKIALVHLEAKESKQNYQPDFINMYVDVPGE 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
2ciu_A	127	TIM21P, import inner membrane translocase subunit	100.0

>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-39  Score=270.98  Aligned_cols=109  Identities=19%  Similarity=0.320  Sum_probs=101.8

Q ss_pred             ccCCcchHHHHHHHHHHhhchhHHHhh----C----CCccccccc-Ccccccccc-ccceEEecCCCceEEEEEEEEEcC
Q 022867          175 IFEPKEYKIFNKALKRIQDDGQVRVRI----G----SPITGYGQE-SRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGP  244 (291)
Q Consensus       175 f~s~spt~iYn~Al~rIk~DprV~~~L----G----ePIkayGe~-s~nrwrRnr-I~~~~y~D~dG~eHm~m~F~VeGp  244 (291)
                      |++++++.+||+||++|++||+|+++|    |    +||+|||++ +++||+||| |+|++++|+||+|||+|+|||+||
T Consensus         2 ~spss~t~~FnrAv~rIk~Dp~v~~~L~~~~G~~~~~~IkayGe~~t~~rw~R~Rpi~s~~~~d~dG~eH~rm~F~VeG~   81 (127)
T 2ciu_A            2 AMGSGDTQLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWTRNRPIVSTKKLDKEGRTHHYMRFHVESK   81 (127)
T ss_dssp             ---CHHHHHHHHHHHHHHHCHHHHHHTTCCCBTTBCCCCEEEECEEECSSCEEECCCCEEEEECTTSCEEEEEEEEEECS
T ss_pred             cCCCCchhHHHHHHHHHhcCHHHHHHhcccCCCCCCcceEEecccCCCChhhhccccceEEEECCCCCEEEEEEEEEEcC
Confidence            456679999999999999999999999    6    899999999 889999999 999999999999999999999999


Q ss_pred             CCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEecCC
Q 022867          245 HGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESY  285 (291)
Q Consensus       245 kg~G~V~lEm~K~~~~g~weYryL~VdV~g~~r~~IiLEd~  285 (291)
                      +++|+||+||+|+++.++|+|+||+|||+|++  +||||+.
T Consensus        82 ~~~G~V~le~~k~~~~~~~ef~Yl~vDV~g~~--Ri~Le~p  120 (127)
T 2ciu_A           82 KKIALVHLEAKESKQNYQPDFINMYVDVPGEK--RYYLIKP  120 (127)
T ss_dssp             SCEEEEEEEEECCSSCSSCEEEEEEEECTTSC--CEEEECC
T ss_pred             CCcEEEEEEEEecCCCCceEEEEEEEEeCCCc--eEEEECC
Confidence            99999999999988899999999999999987  8999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00