Citrus Sinensis ID: 022881
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 290 | ||||||
| 255550403 | 418 | conserved hypothetical protein [Ricinus | 0.948 | 0.657 | 0.747 | 1e-121 | |
| 224141569 | 412 | predicted protein [Populus trichocarpa] | 0.913 | 0.643 | 0.769 | 1e-120 | |
| 225444684 | 432 | PREDICTED: transmembrane protein 184C-li | 0.931 | 0.625 | 0.763 | 1e-119 | |
| 297738540 | 439 | unnamed protein product [Vitis vinifera] | 0.931 | 0.615 | 0.763 | 1e-119 | |
| 357450105 | 439 | Transmembrane protein 184C [Medicago tru | 0.941 | 0.621 | 0.705 | 1e-116 | |
| 356532790 | 396 | PREDICTED: transmembrane protein 184C-li | 0.941 | 0.689 | 0.740 | 1e-115 | |
| 449446843 | 418 | PREDICTED: transmembrane protein 184C-li | 0.910 | 0.631 | 0.724 | 1e-111 | |
| 357119668 | 461 | PREDICTED: transmembrane protein 184C-li | 0.941 | 0.592 | 0.660 | 1e-103 | |
| 145336041 | 403 | uncharacterized protein [Arabidopsis tha | 0.9 | 0.647 | 0.704 | 1e-103 | |
| 242040621 | 470 | hypothetical protein SORBIDRAFT_01g03285 | 0.872 | 0.538 | 0.695 | 1e-102 |
| >gi|255550403|ref|XP_002516252.1| conserved hypothetical protein [Ricinus communis] gi|223544738|gb|EEF46254.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/277 (74%), Positives = 239/277 (86%), Gaps = 2/277 (0%)
Query: 14 LAPSNIASAFSGNTYKDLHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAV 73
+AP+ I+ + Y DLHQPA +IGGCFAL AVVLS+FLI QHLRSYTNPAEQKWIVAV
Sbjct: 1 MAPTGIS--VYKDAYTDLHQPAVIIGGCFALVAVVLSIFLIFQHLRSYTNPAEQKWIVAV 58
Query: 74 LFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENK 133
LFMVPVYA+ESI+SLWN + SL CDILRNCYEAFALY+FGSYLVACLGGE+RVIELLEN+
Sbjct: 59 LFMVPVYATESIISLWNHKFSLVCDILRNCYEAFALYAFGSYLVACLGGEKRVIELLENE 118
Query: 134 LRKQLDKPLLEETDENRGEEQRSYINFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLA 193
+K+L + LLEE DEN+G QRS++NFF RP ++G+D +IEKFGLVQYMILKT+CAFLA
Sbjct: 119 AQKRLSQTLLEELDENQGVHQRSFMNFFCRPYIIGRDAFTIEKFGLVQYMILKTLCAFLA 178
Query: 194 FLLELFGVYGDGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFIS 253
FLLELFGVYGDGEFKWYYGYPY+AVVLNFSQMWALYCL+ FYN+ HE L PIKPL+KFIS
Sbjct: 179 FLLELFGVYGDGEFKWYYGYPYIAVVLNFSQMWALYCLLHFYNIMHERLRPIKPLSKFIS 238
Query: 254 FKAIVFATWWQGVGIALLCAIGVLPRKKNYKLDCRTF 290
FKAIVFATWWQGV IALLCA +LP + ++ + F
Sbjct: 239 FKAIVFATWWQGVDIALLCASDILPNEGKFRTGLQDF 275
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141569|ref|XP_002324140.1| predicted protein [Populus trichocarpa] gi|222865574|gb|EEF02705.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225444684|ref|XP_002277706.1| PREDICTED: transmembrane protein 184C-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297738540|emb|CBI27785.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357450105|ref|XP_003595329.1| Transmembrane protein 184C [Medicago truncatula] gi|355484377|gb|AES65580.1| Transmembrane protein 184C [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356532790|ref|XP_003534953.1| PREDICTED: transmembrane protein 184C-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449446843|ref|XP_004141180.1| PREDICTED: transmembrane protein 184C-like [Cucumis sativus] gi|449488211|ref|XP_004157969.1| PREDICTED: transmembrane protein 184C-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357119668|ref|XP_003561557.1| PREDICTED: transmembrane protein 184C-like [Brachypodium distachyon] | Back alignment and taxonomy information |
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| >gi|145336041|ref|NP_173720.3| uncharacterized protein [Arabidopsis thaliana] gi|60547589|gb|AAX23758.1| hypothetical protein At1g23070 [Arabidopsis thaliana] gi|71905419|gb|AAZ52687.1| hypothetical protein At1g23070 [Arabidopsis thaliana] gi|332192209|gb|AEE30330.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|242040621|ref|XP_002467705.1| hypothetical protein SORBIDRAFT_01g032850 [Sorghum bicolor] gi|241921559|gb|EER94703.1| hypothetical protein SORBIDRAFT_01g032850 [Sorghum bicolor] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 290 | ||||||
| TAIR|locus:2201235 | 403 | AT1G23070 "AT1G23070" [Arabido | 0.9 | 0.647 | 0.677 | 6.8e-95 | |
| TAIR|locus:2121763 | 485 | LAZ1 "AT4G38360" [Arabidopsis | 0.8 | 0.478 | 0.534 | 3.7e-64 | |
| TAIR|locus:2196005 | 484 | AT1G77220 "AT1G77220" [Arabido | 0.765 | 0.458 | 0.549 | 2.6e-63 | |
| UNIPROTKB|Q9NVA4 | 438 | TMEM184C "Transmembrane protei | 0.820 | 0.543 | 0.322 | 2.5e-33 | |
| UNIPROTKB|Q5ZMP3 | 445 | TMEM184C "Transmembrane protei | 0.817 | 0.532 | 0.333 | 6.7e-33 | |
| UNIPROTKB|A5D9H3 | 470 | TMEM34 "Transmembrane protein | 0.820 | 0.506 | 0.314 | 1.8e-32 | |
| UNIPROTKB|Q17QL9 | 438 | TMEM184C "Transmembrane protei | 0.820 | 0.543 | 0.314 | 1.8e-32 | |
| ZFIN|ZDB-GENE-040426-2925 | 420 | tmem184a "transmembrane protei | 0.710 | 0.490 | 0.373 | 3.7e-32 | |
| DICTYBASE|DDB_G0279555 | 351 | tmem184C "transmembrane protei | 0.396 | 0.327 | 0.353 | 4.3e-32 | |
| RGD|727852 | 503 | Tmem184c "transmembrane protei | 0.820 | 0.473 | 0.318 | 7.7e-32 |
| TAIR|locus:2201235 AT1G23070 "AT1G23070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
Identities = 181/267 (67%), Positives = 212/267 (79%)
Query: 26 NTYKDLHQPAFVIGGCXXXXXXXXXXXXXXQHLRSYTNPAEQKWIVAVLFMVPVYASESI 85
+TY+DLH P+ +IGG QHLR YTNPAEQKWIV+VLFMVPVYA+ESI
Sbjct: 7 STYRDLHLPSLIIGGSFATVAICLSLYSILQHLRFYTNPAEQKWIVSVLFMVPVYATESI 66
Query: 86 LSLWNPRLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENKLRKQLDKPLLEE 145
+SL N + SL CDILRNCYEAFALYSFGSYLVACLGGERRV+E LEN+ +K PLLEE
Sbjct: 67 ISLSNSKFSLPCDILRNCYEAFALYSFGSYLVACLGGERRVVEYLENESKK----PLLEE 122
Query: 146 -TDENRGEEQR-SYINFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYG 203
+E++ ++++ S+ F P VLG++L IEKFGLVQYMILKT CAFL FLLEL GVYG
Sbjct: 123 GANESKKKKKKNSFWKFLCDPYVLGRELFVIEKFGLVQYMILKTFCAFLTFLLELLGVYG 182
Query: 204 DGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWW 263
DGEFKWYYGYPY+ VVLNFSQMWAL+CLV+FYNVTHE L+ IKPLAKFISFKAIVFATWW
Sbjct: 183 DGEFKWYYGYPYIVVVLNFSQMWALFCLVQFYNVTHERLKEIKPLAKFISFKAIVFATWW 242
Query: 264 QGVGIALLCAIGVLPRKKNYKLDCRTF 290
QG GIALLC G+LP++ ++ + F
Sbjct: 243 QGFGIALLCYYGILPKEGRFQNGLQDF 269
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| TAIR|locus:2121763 LAZ1 "AT4G38360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2196005 AT1G77220 "AT1G77220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9NVA4 TMEM184C "Transmembrane protein 184C" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5ZMP3 TMEM184C "Transmembrane protein 184C" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A5D9H3 TMEM34 "Transmembrane protein 34" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q17QL9 TMEM184C "Transmembrane protein 184C" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040426-2925 tmem184a "transmembrane protein 184a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0279555 tmem184C "transmembrane protein 184C" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| RGD|727852 Tmem184c "transmembrane protein 184C" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 290 | |||
| pfam03619 | 272 | pfam03619, Solute_trans_a, Organic solute transpor | 1e-96 |
| >gnl|CDD|217643 pfam03619, Solute_trans_a, Organic solute transporter Ostalpha | Back alignment and domain information |
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Score = 285 bits (731), Expect = 1e-96
Identities = 106/247 (42%), Positives = 148/247 (59%), Gaps = 14/247 (5%)
Query: 32 HQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNP 91
A +I G F L A+++SLFLILQHL +YT P EQ+ I+ +L MVP+YA S LSL P
Sbjct: 1 PTWAILIAGLFVLLALLISLFLILQHLTNYTKPEEQRLIIRILLMVPIYAVISFLSLLFP 60
Query: 92 RLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENKLRKQLDKPLLEETDENRG 151
+ ++ D++R+CYEAF +Y+F S L+A LGGER +I LLE K + PLL
Sbjct: 61 KAAIYFDLIRDCYEAFVIYTFFSLLIAYLGGERNIIRLLEGKPPIRHPFPLLT------- 113
Query: 152 EEQRSYINFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYGDGEFKWYY 211
R K G++QY+++K +CA LA +L+ FGVYG+G F
Sbjct: 114 -------KCLLRTDRSDPTFFLRCKRGVLQYVVVKPLCAILAIILQAFGVYGEGSFSPDS 166
Query: 212 GYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVGIALL 271
GY YL ++ N S ALYCLV FY + L P KPL KF+ K I+F ++WQGV I++L
Sbjct: 167 GYLYLTIIYNISVSLALYCLVLFYKALKDELAPFKPLLKFLCIKLIIFFSFWQGVLISIL 226
Query: 272 CAIGVLP 278
++G++
Sbjct: 227 VSLGLIK 233
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This family is a transmembrane organic solute transport protein. In vertebrates these proteins form a complex with Ostbeta, and function as bile transporters. In plants they may transport brassinosteroid-like compounds and act as regulators of cell death. Length = 272 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 290 | |||
| PF03619 | 274 | Solute_trans_a: Organic solute transporter Ostalph | 100.0 | |
| KOG2641 | 386 | consensus Predicted seven transmembrane receptor - | 100.0 | |
| KOG3979 | 296 | consensus FGF receptor activating protein 1 [Signa | 88.2 |
| >PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function | Back alignment and domain information |
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Probab=100.00 E-value=7.8e-71 Score=508.01 Aligned_cols=238 Identities=42% Similarity=0.751 Sum_probs=226.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHHhhHhhHHHHHHHhHhHhhccchHHHHHHHHHHHHHHHHHH
Q 022881 32 HQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYS 111 (290)
Q Consensus 32 ~~~~~~iag~f~~~a~~is~~~I~~Hl~~y~~P~~Qr~IirIl~mvPiyai~S~lsl~~p~~~~y~~~ird~YeA~~ly~ 111 (290)
|+++|++||+|+++|+++|+++|++|++||++|++||+|+||++|+|+||++||+|+++||+++|+|++||+|||+++|+
T Consensus 1 ~~~~~~ia~~~~~~~~~is~~~i~~hl~~y~~P~~Qr~iirIl~m~Piyai~S~~sl~~p~~~~~~~~ir~~Yea~~ly~ 80 (274)
T PF03619_consen 1 HTWAWIIAGIFALLTILISLFLIYQHLRNYSKPEEQRYIIRILLMVPIYAICSLLSLLFPRAAIYLDFIRDCYEAFVLYS 80 (274)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCChHHHHHHHHHhhhhccCCccchhhccccCcCCcccc---cccccccccChhhhHHHhhhhhhHhHHHHH
Q 022881 112 FGSYLVACLGGERRVIELLENKLRKQLDKPLLEETDENRGEEQRSYI---NFFFRPCVLGKDLLSIEKFGLVQYMILKTV 188 (290)
Q Consensus 112 F~~Lli~ylGGe~~~i~~l~~~~~~~~~~p~~~~~~~~~~~~~~~p~---~~c~~~~~~~~~~l~~~k~~VlQ~~ivkpl 188 (290)
|++|+++|+|||+++++.+++++ +.+|++|| |||+|++++|++++|+||+||+||+++||+
T Consensus 81 F~~Ll~~y~gg~~~~~~~l~~~~----------------~~~~~~P~~~~~~c~~~~~~~~~~l~~~k~~VlQ~~vvrpl 144 (274)
T PF03619_consen 81 FFSLLLNYLGGEEALVEVLSGKP----------------PIKHPWPCCCCCCCLPPWPMTKRFLRRCKWGVLQYVVVRPL 144 (274)
T ss_pred HHHHHHHHhCCHHHHHHHhhcCC----------------CCCCCCcccccccCCCccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887542 22455665 457799999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCccccccccchhhHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 022881 189 CAFLAFLLELFGVYGDGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVGI 268 (290)
Q Consensus 189 ~~ii~iil~~~g~Y~~g~~~~~~~~~yl~ii~~iS~~lAly~L~~fy~~~~~~L~~~~P~~KFl~iKlvvflsfwQ~~ii 268 (290)
+++++++++++|+|+||+++++.+++|+++++|+|+++|+|||.+||+++|++|+|+||++||+|+|+|+|++|||++++
T Consensus 145 ~~~i~iil~~~g~y~~~~~~~~~~~~~l~ii~~iS~~~Aly~L~~fy~~~~~~L~~~~p~~KF~~iK~vvfl~f~Q~~ii 224 (274)
T PF03619_consen 145 LSIISIILEAFGVYCEGSFSPHSAYLYLTIINNISVTLALYGLVIFYRATKEELKPYRPLLKFLCIKLVVFLSFWQGFII 224 (274)
T ss_pred HHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCcc
Q 022881 269 ALLCAIGVLPRKKNYKL 285 (290)
Q Consensus 269 ~iL~~~gvi~~~~~~~~ 285 (290)
++|.+.|++|++++.++
T Consensus 225 ~iL~~~g~i~~~~~~~~ 241 (274)
T PF03619_consen 225 SILASFGVIPCTPPWSS 241 (274)
T ss_pred HHHHHCCCcCCCccccc
Confidence 99999999999876553
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|
| >KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms] | Back alignment and domain information |
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| >KOG3979 consensus FGF receptor activating protein 1 [Signal transduction mechanisms] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 290 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 1e-07
Identities = 35/198 (17%), Positives = 75/198 (37%), Gaps = 38/198 (19%)
Query: 94 SLACDILRNCYEAFALYSFGSYL---VACL---GGERRVIELLENKLRKQLDKPLLEETD 147
L R ++ +++ +++ + L + + ++ NKL K L+E+
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK---YSLVEK-- 419
Query: 148 ENRGEEQRSYI-NFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYGDGE 206
+ +E I + + V ++ ++ + + Y I KT + +L Y D
Sbjct: 420 --QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-----DLIPPYLDQY 472
Query: 207 FKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGV 266
F + G+ +L + + + L+ +V F + +F+ K +T W
Sbjct: 473 FYSHIGH-HLKNIEH-PERMTLFRMV-FLDF------------RFLEQKIRHDSTAWNAS 517
Query: 267 GIALLCAIGVLPRKKNYK 284
G L L + K YK
Sbjct: 518 GSIL----NTLQQLKFYK 531
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00