Citrus Sinensis ID: 022881


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
MLGVEDMHATGMRLAPSNIASAFSGNTYKDLHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENKLRKQLDKPLLEETDENRGEEQRSYINFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYGDGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVGIALLCAIGVLPRKKNYKLDCRTF
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
cccccEcccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEEEHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccHccccccccccccccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccc
MLGVEDMHatgmrlapsniasafsgntykdlhqpafvIGGCFALAAVVLSLFLILQHLrsytnpaeQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENKLRKQldkplleetdenrgeEQRSYINfffrpcvlgkdllsieKFGLVQYMILKTVCAFLAFLLELFGvygdgefkwyygyPYLAVVLNFSQMWALYCLVKfynvtheglepikplakFISFKAIVFATWWQGVGIALLCAIgvlprkknykldcrtf
MLGVEDMHATGMRLAPSNIASAFSGNTYKDLHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENklrkqldkplleetdenrgeeqrsyiNFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYGDGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVGIALLCaigvlprkknykldcrtf
MLGVEDMHATGMRLAPSNIASAFSGNTYKDLHQPAFVIGGCfalaavvlslflilQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENKLRKQLDKPLLEETDENRGEEQRSYINFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYGDGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVGIALLCAIGVLPRKKNYKLDCRTF
*******************ASAFSGNTYKDLHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENKL*********************SYINFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYGDGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVGIALLCAIGVLPRKKNYKL*****
**************************TYKDLHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENKLRKQLDKPLLEETDENRGEEQRSYINFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYGDGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVGIALLCAIGVLPRKKNYK*DCRTF
MLGVEDMHATGMRLAPSNIASAFSGNTYKDLHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENKLRKQLDKPLLEETDENRGEEQRSYINFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYGDGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVGIALLCAIGVLPRKKNYKLDCRTF
********ATGMRLAPSNIASAFSGNTYKDLHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENKLRKQLDKPLLEETDENRGEEQRSYINFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYGDGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVGIALLCAIGVLPRKKNYKLD***F
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
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MLGVEDMHATGMRLAPSNIASAFSGNTYKDLHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENKLRKQLDKPLLEETDENRGEEQRSYINFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYGDGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVGIALLCAIGVLPRKKNYKLDCRTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query290 2.2.26 [Sep-21-2011]
Q9NVA4 438 Transmembrane protein 184 yes no 0.817 0.541 0.349 9e-39
Q5RET6 438 Transmembrane protein 184 yes no 0.817 0.541 0.349 1e-38
Q17QL9 438 Transmembrane protein 184 yes no 0.817 0.541 0.341 4e-38
Q6GQE1 444 Transmembrane protein 184 N/A no 0.820 0.536 0.358 7e-38
Q28CV2 443 Transmembrane protein 184 yes no 0.820 0.537 0.358 9e-38
Q5ZMP3 445 Transmembrane protein 184 yes no 0.813 0.530 0.351 2e-37
Q3TPR7 525 Transmembrane protein 184 no no 0.817 0.451 0.345 3e-36
Q810F5 503 Transmembrane protein 184 yes no 0.817 0.471 0.341 7e-36
Q54WM0 351 Transmembrane protein 184 yes no 0.796 0.658 0.361 2e-34
Q54PI4 493 Transmembrane protein 184 no no 0.772 0.454 0.329 3e-32
>sp|Q9NVA4|T184C_HUMAN Transmembrane protein 184C OS=Homo sapiens GN=TMEM184C PE=2 SV=2 Back     alignment and function desciption
 Score =  160 bits (405), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 145/255 (56%), Gaps = 18/255 (7%)

Query: 31  LHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWN 90
           +H  A+ I G F L  + +SL++ILQHL  YT P  QK I+ +L+MVP+Y+ +S ++L  
Sbjct: 44  IHTKAWFIAGIFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIALKY 103

Query: 91  PRLSLACDILRNCYEAFALYSFGSYLVACLGGE-RRVIELLENKLRKQLDKPLLEETDEN 149
           P +++  D  R CYEA+ +Y+F  +L   L      ++ +LE K +++   PL       
Sbjct: 104 PGIAIYVDTCRECYEAYVIYNFMGFLTNYLTNRYPNLVLILEAKDQQKHFPPLC------ 157

Query: 150 RGEEQRSYINFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYGDGEFKW 209
                         P  +G+ LL   K G++QY +++     +A + EL G+Y +G F +
Sbjct: 158 -----------CCPPWAMGEVLLFRCKLGVLQYTVVRPFTTIVALICELLGIYDEGNFSF 206

Query: 210 YYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVGIA 269
              + YL ++ N SQ++A+YCL+ FY V  E L PI+P+ KF+  K +VF ++WQ V IA
Sbjct: 207 SNAWTYLVIINNMSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVVIA 266

Query: 270 LLCAIGVLPRKKNYK 284
           LL  +GV+  K  ++
Sbjct: 267 LLVKVGVISEKHTWE 281




Possible tumor suppressor which may play a role in cell growth.
Homo sapiens (taxid: 9606)
>sp|Q5RET6|T184C_PONAB Transmembrane protein 184C OS=Pongo abelii GN=TMEM184C PE=2 SV=1 Back     alignment and function description
>sp|Q17QL9|T184C_BOVIN Transmembrane protein 184C OS=Bos taurus GN=TMEM184C PE=2 SV=1 Back     alignment and function description
>sp|Q6GQE1|T184C_XENLA Transmembrane protein 184C OS=Xenopus laevis GN=tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q28CV2|T184C_XENTR Transmembrane protein 184C OS=Xenopus tropicalis GN=tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q5ZMP3|T184C_CHICK Transmembrane protein 184C OS=Gallus gallus GN=TMEM184C PE=2 SV=1 Back     alignment and function description
>sp|Q3TPR7|T184C_MOUSE Transmembrane protein 184C OS=Mus musculus GN=Tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q810F5|T184C_RAT Transmembrane protein 184C OS=Rattus norvegicus GN=Tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q54WM0|T1843_DICDI Transmembrane protein 184 homolog DDB_G0279555 OS=Dictyostelium discoideum GN=tmem184C PE=3 SV=1 Back     alignment and function description
>sp|Q54PI4|T1841_DICDI Transmembrane protein 184 homolog DDB_G0284525 OS=Dictyostelium discoideum GN=tmem184A PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query290
255550403 418 conserved hypothetical protein [Ricinus 0.948 0.657 0.747 1e-121
224141569 412 predicted protein [Populus trichocarpa] 0.913 0.643 0.769 1e-120
225444684 432 PREDICTED: transmembrane protein 184C-li 0.931 0.625 0.763 1e-119
297738540 439 unnamed protein product [Vitis vinifera] 0.931 0.615 0.763 1e-119
357450105 439 Transmembrane protein 184C [Medicago tru 0.941 0.621 0.705 1e-116
356532790 396 PREDICTED: transmembrane protein 184C-li 0.941 0.689 0.740 1e-115
449446843 418 PREDICTED: transmembrane protein 184C-li 0.910 0.631 0.724 1e-111
357119668 461 PREDICTED: transmembrane protein 184C-li 0.941 0.592 0.660 1e-103
145336041 403 uncharacterized protein [Arabidopsis tha 0.9 0.647 0.704 1e-103
242040621 470 hypothetical protein SORBIDRAFT_01g03285 0.872 0.538 0.695 1e-102
>gi|255550403|ref|XP_002516252.1| conserved hypothetical protein [Ricinus communis] gi|223544738|gb|EEF46254.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/277 (74%), Positives = 239/277 (86%), Gaps = 2/277 (0%)

Query: 14  LAPSNIASAFSGNTYKDLHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAV 73
           +AP+ I+     + Y DLHQPA +IGGCFAL AVVLS+FLI QHLRSYTNPAEQKWIVAV
Sbjct: 1   MAPTGIS--VYKDAYTDLHQPAVIIGGCFALVAVVLSIFLIFQHLRSYTNPAEQKWIVAV 58

Query: 74  LFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENK 133
           LFMVPVYA+ESI+SLWN + SL CDILRNCYEAFALY+FGSYLVACLGGE+RVIELLEN+
Sbjct: 59  LFMVPVYATESIISLWNHKFSLVCDILRNCYEAFALYAFGSYLVACLGGEKRVIELLENE 118

Query: 134 LRKQLDKPLLEETDENRGEEQRSYINFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLA 193
            +K+L + LLEE DEN+G  QRS++NFF RP ++G+D  +IEKFGLVQYMILKT+CAFLA
Sbjct: 119 AQKRLSQTLLEELDENQGVHQRSFMNFFCRPYIIGRDAFTIEKFGLVQYMILKTLCAFLA 178

Query: 194 FLLELFGVYGDGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFIS 253
           FLLELFGVYGDGEFKWYYGYPY+AVVLNFSQMWALYCL+ FYN+ HE L PIKPL+KFIS
Sbjct: 179 FLLELFGVYGDGEFKWYYGYPYIAVVLNFSQMWALYCLLHFYNIMHERLRPIKPLSKFIS 238

Query: 254 FKAIVFATWWQGVGIALLCAIGVLPRKKNYKLDCRTF 290
           FKAIVFATWWQGV IALLCA  +LP +  ++   + F
Sbjct: 239 FKAIVFATWWQGVDIALLCASDILPNEGKFRTGLQDF 275




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141569|ref|XP_002324140.1| predicted protein [Populus trichocarpa] gi|222865574|gb|EEF02705.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225444684|ref|XP_002277706.1| PREDICTED: transmembrane protein 184C-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297738540|emb|CBI27785.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357450105|ref|XP_003595329.1| Transmembrane protein 184C [Medicago truncatula] gi|355484377|gb|AES65580.1| Transmembrane protein 184C [Medicago truncatula] Back     alignment and taxonomy information
>gi|356532790|ref|XP_003534953.1| PREDICTED: transmembrane protein 184C-like [Glycine max] Back     alignment and taxonomy information
>gi|449446843|ref|XP_004141180.1| PREDICTED: transmembrane protein 184C-like [Cucumis sativus] gi|449488211|ref|XP_004157969.1| PREDICTED: transmembrane protein 184C-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357119668|ref|XP_003561557.1| PREDICTED: transmembrane protein 184C-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|145336041|ref|NP_173720.3| uncharacterized protein [Arabidopsis thaliana] gi|60547589|gb|AAX23758.1| hypothetical protein At1g23070 [Arabidopsis thaliana] gi|71905419|gb|AAZ52687.1| hypothetical protein At1g23070 [Arabidopsis thaliana] gi|332192209|gb|AEE30330.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242040621|ref|XP_002467705.1| hypothetical protein SORBIDRAFT_01g032850 [Sorghum bicolor] gi|241921559|gb|EER94703.1| hypothetical protein SORBIDRAFT_01g032850 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query290
TAIR|locus:2201235 403 AT1G23070 "AT1G23070" [Arabido 0.9 0.647 0.677 6.8e-95
TAIR|locus:2121763 485 LAZ1 "AT4G38360" [Arabidopsis 0.8 0.478 0.534 3.7e-64
TAIR|locus:2196005 484 AT1G77220 "AT1G77220" [Arabido 0.765 0.458 0.549 2.6e-63
UNIPROTKB|Q9NVA4 438 TMEM184C "Transmembrane protei 0.820 0.543 0.322 2.5e-33
UNIPROTKB|Q5ZMP3 445 TMEM184C "Transmembrane protei 0.817 0.532 0.333 6.7e-33
UNIPROTKB|A5D9H3 470 TMEM34 "Transmembrane protein 0.820 0.506 0.314 1.8e-32
UNIPROTKB|Q17QL9 438 TMEM184C "Transmembrane protei 0.820 0.543 0.314 1.8e-32
ZFIN|ZDB-GENE-040426-2925 420 tmem184a "transmembrane protei 0.710 0.490 0.373 3.7e-32
DICTYBASE|DDB_G0279555 351 tmem184C "transmembrane protei 0.396 0.327 0.353 4.3e-32
RGD|727852 503 Tmem184c "transmembrane protei 0.820 0.473 0.318 7.7e-32
TAIR|locus:2201235 AT1G23070 "AT1G23070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
 Identities = 181/267 (67%), Positives = 212/267 (79%)

Query:    26 NTYKDLHQPAFVIGGCXXXXXXXXXXXXXXQHLRSYTNPAEQKWIVAVLFMVPVYASESI 85
             +TY+DLH P+ +IGG               QHLR YTNPAEQKWIV+VLFMVPVYA+ESI
Sbjct:     7 STYRDLHLPSLIIGGSFATVAICLSLYSILQHLRFYTNPAEQKWIVSVLFMVPVYATESI 66

Query:    86 LSLWNPRLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENKLRKQLDKPLLEE 145
             +SL N + SL CDILRNCYEAFALYSFGSYLVACLGGERRV+E LEN+ +K    PLLEE
Sbjct:    67 ISLSNSKFSLPCDILRNCYEAFALYSFGSYLVACLGGERRVVEYLENESKK----PLLEE 122

Query:   146 -TDENRGEEQR-SYINFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYG 203
               +E++ ++++ S+  F   P VLG++L  IEKFGLVQYMILKT CAFL FLLEL GVYG
Sbjct:   123 GANESKKKKKKNSFWKFLCDPYVLGRELFVIEKFGLVQYMILKTFCAFLTFLLELLGVYG 182

Query:   204 DGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWW 263
             DGEFKWYYGYPY+ VVLNFSQMWAL+CLV+FYNVTHE L+ IKPLAKFISFKAIVFATWW
Sbjct:   183 DGEFKWYYGYPYIVVVLNFSQMWALFCLVQFYNVTHERLKEIKPLAKFISFKAIVFATWW 242

Query:   264 QGVGIALLCAIGVLPRKKNYKLDCRTF 290
             QG GIALLC  G+LP++  ++   + F
Sbjct:   243 QGFGIALLCYYGILPKEGRFQNGLQDF 269




GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0009062 "fatty acid catabolic process" evidence=RCA
TAIR|locus:2121763 LAZ1 "AT4G38360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196005 AT1G77220 "AT1G77220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NVA4 TMEM184C "Transmembrane protein 184C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMP3 TMEM184C "Transmembrane protein 184C" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A5D9H3 TMEM34 "Transmembrane protein 34" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QL9 TMEM184C "Transmembrane protein 184C" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2925 tmem184a "transmembrane protein 184a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279555 tmem184C "transmembrane protein 184C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|727852 Tmem184c "transmembrane protein 184C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
pfam03619272 pfam03619, Solute_trans_a, Organic solute transpor 1e-96
>gnl|CDD|217643 pfam03619, Solute_trans_a, Organic solute transporter Ostalpha Back     alignment and domain information
 Score =  285 bits (731), Expect = 1e-96
 Identities = 106/247 (42%), Positives = 148/247 (59%), Gaps = 14/247 (5%)

Query: 32  HQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNP 91
              A +I G F L A+++SLFLILQHL +YT P EQ+ I+ +L MVP+YA  S LSL  P
Sbjct: 1   PTWAILIAGLFVLLALLISLFLILQHLTNYTKPEEQRLIIRILLMVPIYAVISFLSLLFP 60

Query: 92  RLSLACDILRNCYEAFALYSFGSYLVACLGGERRVIELLENKLRKQLDKPLLEETDENRG 151
           + ++  D++R+CYEAF +Y+F S L+A LGGER +I LLE K   +   PLL        
Sbjct: 61  KAAIYFDLIRDCYEAFVIYTFFSLLIAYLGGERNIIRLLEGKPPIRHPFPLLT------- 113

Query: 152 EEQRSYINFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYGDGEFKWYY 211
                      R            K G++QY+++K +CA LA +L+ FGVYG+G F    
Sbjct: 114 -------KCLLRTDRSDPTFFLRCKRGVLQYVVVKPLCAILAIILQAFGVYGEGSFSPDS 166

Query: 212 GYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVGIALL 271
           GY YL ++ N S   ALYCLV FY    + L P KPL KF+  K I+F ++WQGV I++L
Sbjct: 167 GYLYLTIIYNISVSLALYCLVLFYKALKDELAPFKPLLKFLCIKLIIFFSFWQGVLISIL 226

Query: 272 CAIGVLP 278
            ++G++ 
Sbjct: 227 VSLGLIK 233


This family is a transmembrane organic solute transport protein. In vertebrates these proteins form a complex with Ostbeta, and function as bile transporters. In plants they may transport brassinosteroid-like compounds and act as regulators of cell death. Length = 272

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 290
PF03619274 Solute_trans_a: Organic solute transporter Ostalph 100.0
KOG2641 386 consensus Predicted seven transmembrane receptor - 100.0
KOG3979296 consensus FGF receptor activating protein 1 [Signa 88.2
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function Back     alignment and domain information
Probab=100.00  E-value=7.8e-71  Score=508.01  Aligned_cols=238  Identities=42%  Similarity=0.751  Sum_probs=226.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHHhhHhhHHHHHHHhHhHhhccchHHHHHHHHHHHHHHHHHH
Q 022881           32 HQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYS  111 (290)
Q Consensus        32 ~~~~~~iag~f~~~a~~is~~~I~~Hl~~y~~P~~Qr~IirIl~mvPiyai~S~lsl~~p~~~~y~~~ird~YeA~~ly~  111 (290)
                      |+++|++||+|+++|+++|+++|++|++||++|++||+|+||++|+|+||++||+|+++||+++|+|++||+|||+++|+
T Consensus         1 ~~~~~~ia~~~~~~~~~is~~~i~~hl~~y~~P~~Qr~iirIl~m~Piyai~S~~sl~~p~~~~~~~~ir~~Yea~~ly~   80 (274)
T PF03619_consen    1 HTWAWIIAGIFALLTILISLFLIYQHLRNYSKPEEQRYIIRILLMVPIYAICSLLSLLFPRAAIYLDFIRDCYEAFVLYS   80 (274)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCChHHHHHHHHHhhhhccCCccchhhccccCcCCcccc---cccccccccChhhhHHHhhhhhhHhHHHHH
Q 022881          112 FGSYLVACLGGERRVIELLENKLRKQLDKPLLEETDENRGEEQRSYI---NFFFRPCVLGKDLLSIEKFGLVQYMILKTV  188 (290)
Q Consensus       112 F~~Lli~ylGGe~~~i~~l~~~~~~~~~~p~~~~~~~~~~~~~~~p~---~~c~~~~~~~~~~l~~~k~~VlQ~~ivkpl  188 (290)
                      |++|+++|+|||+++++.+++++                +.+|++||   |||+|++++|++++|+||+||+||+++||+
T Consensus        81 F~~Ll~~y~gg~~~~~~~l~~~~----------------~~~~~~P~~~~~~c~~~~~~~~~~l~~~k~~VlQ~~vvrpl  144 (274)
T PF03619_consen   81 FFSLLLNYLGGEEALVEVLSGKP----------------PIKHPWPCCCCCCCLPPWPMTKRFLRRCKWGVLQYVVVRPL  144 (274)
T ss_pred             HHHHHHHHhCCHHHHHHHhhcCC----------------CCCCCCcccccccCCCccccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998887542                22455665   457799999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCccccccccchhhHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 022881          189 CAFLAFLLELFGVYGDGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVGI  268 (290)
Q Consensus       189 ~~ii~iil~~~g~Y~~g~~~~~~~~~yl~ii~~iS~~lAly~L~~fy~~~~~~L~~~~P~~KFl~iKlvvflsfwQ~~ii  268 (290)
                      +++++++++++|+|+||+++++.+++|+++++|+|+++|+|||.+||+++|++|+|+||++||+|+|+|+|++|||++++
T Consensus       145 ~~~i~iil~~~g~y~~~~~~~~~~~~~l~ii~~iS~~~Aly~L~~fy~~~~~~L~~~~p~~KF~~iK~vvfl~f~Q~~ii  224 (274)
T PF03619_consen  145 LSIISIILEAFGVYCEGSFSPHSAYLYLTIINNISVTLALYGLVIFYRATKEELKPYRPLLKFLCIKLVVFLSFWQGFII  224 (274)
T ss_pred             HHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCcc
Q 022881          269 ALLCAIGVLPRKKNYKL  285 (290)
Q Consensus       269 ~iL~~~gvi~~~~~~~~  285 (290)
                      ++|.+.|++|++++.++
T Consensus       225 ~iL~~~g~i~~~~~~~~  241 (274)
T PF03619_consen  225 SILASFGVIPCTPPWSS  241 (274)
T ss_pred             HHHHHCCCcCCCccccc
Confidence            99999999999876553



>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms] Back     alignment and domain information
>KOG3979 consensus FGF receptor activating protein 1 [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.2 bits (124), Expect = 1e-07
 Identities = 35/198 (17%), Positives = 75/198 (37%), Gaps = 38/198 (19%)

Query: 94  SLACDILRNCYEAFALYSFGSYL---VACL---GGERRVIELLENKLRKQLDKPLLEETD 147
            L     R  ++  +++   +++   +  L      +  + ++ NKL K     L+E+  
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK---YSLVEK-- 419

Query: 148 ENRGEEQRSYI-NFFFRPCVLGKDLLSIEKFGLVQYMILKTVCAFLAFLLELFGVYGDGE 206
             + +E    I + +    V  ++  ++ +  +  Y I KT  +      +L   Y D  
Sbjct: 420 --QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-----DLIPPYLDQY 472

Query: 207 FKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGV 266
           F  + G+ +L  + +  +   L+ +V F +             +F+  K    +T W   
Sbjct: 473 FYSHIGH-HLKNIEH-PERMTLFRMV-FLDF------------RFLEQKIRHDSTAWNAS 517

Query: 267 GIALLCAIGVLPRKKNYK 284
           G  L      L + K YK
Sbjct: 518 GSIL----NTLQQLKFYK 531


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00