Citrus Sinensis ID: 022883

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MHAFNLSSINVSTEFNATRRRRCLSYNNSLDLEYGRRRRVGRGCKDLTRTYGIVACVGGGGGGSGGGGERLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGDDSDSF
Secondary Structure (PSIPRED)
cccccccccEEEEEEccccccEEEEccccccccccccccccccccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEEcccccccccEEEEEEEEEEEEccccccEEEEEEEEEEEccccEEEEEccccccccccccccccEEEccccccccccEEEEEEEEEEEEcccccEEEEEEEccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcHEEEEcccccccccccccccccccccccccEEEccccccccccccEEEEEEcccccccccccccccccccHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccEEEEEEEEEccccccccccEEEEEEEEEEEEccccEEEEEEEEEEEEccccEEEEEEcccEcccccEEcccccEEEEcccEcccccccEEEEEEEEccccccccEEEEEcccEEEcccccccccc
Coil and Loop (DISEMBL)
mhafnlssinvstefnatRRRRCLSYnnsldleygrrrrvgrgckdlTRTYGIVacvggggggsggggerlsSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLkeiapnsllKCLSDATTLGIRVQVRSVYiedrsqplkgqyFFAYRVRITNNSERPVQLLRRHWiitdangktenilgvgvigeqpvilpntsfeyssacplstpsgrmegdfemKHVDRVGSQTFnvaiapfslstmgddsdsf
Flexible Loop (DISEMBL)
mhafnlssinvstefnatrrrrclsynnsldleygrrrrvgrgckdltrTYGIVACVGGGGGGSGGGGERLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARirdslrsfeeeepifrlRRLMKEAVAEERFEDAARYRDKlkeiapnsllkclsdattlgirVQVRsvyiedrsqplkgqyfFAYRVRitnnserpvQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVaiapfslstmgddsdsf
Low Complexity Region (SEG)
MHAFNLSSINVSTEFNATRRRRCLSYNNSLDLEYGRRRRVGRGCKDLTRTYGIVACVggggggsggggErlsssarsflsrsQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGDDSDSF
Disordered region (IsUnstruct)
************TEFNATRRRRCLSYNNSLDLEYGRRRRVGRGCKDLTRTYGIVAC***************************************************************IFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSAC********************VGSQTFNVAIAP*************
Disordered Region (DISOPRED)
**************FNATRRRRCLSYNNSLDL**GRR**VGRGCKDLTRTY**********************S*RSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFS***********
Disordered Region (DISEMBL)
MHAFNLSSINVSTEFNATRRRRCLSYNNSLDLEYGRRRRVGRGCKDLTRTYGIVACVGGG*****************FLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLST********
Disordered Region (DISPRO)
**AFNLSSINVSTEFNATRRRRCLSYNNSLDLEYGRRRRVGRGCKDLTRTYGIVACVGG********************SRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTM*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHAFNLSSINVSTEFNATRRRRCLSYNNSLDLEYGRRRRVGRGCKDLTRTYGIVACVGGGGGGSGGGGERLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGDDSDSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
Q2VZE7	130	Protein ApaG OS=Magnetosp	yes	no	0.406	0.907	0.504	8e-28
Q0ASF3	130	Protein ApaG OS=Maricauli	yes	no	0.413	0.923	0.471	2e-27
Q2IGT4	125	Protein ApaG OS=Anaeromyx	yes	no	0.420	0.976	0.472	9e-27
Q8UI68	130	Protein ApaG OS=Agrobacte	yes	no	0.417	0.930	0.467	2e-26
C3MFB9	130	Protein ApaG OS=Rhizobium	yes	no	0.417	0.930	0.475	2e-26
A6U5R0	130	Protein ApaG OS=Sinorhizo	yes	no	0.417	0.930	0.467	3e-26
B4UHA8	125	Protein ApaG OS=Anaeromyx	yes	no	0.420	0.976	0.480	4e-26
Q98BB4	130	Protein ApaG OS=Rhizobium	yes	no	0.417	0.930	0.467	4e-26
Q8G2L5	130	Protein ApaG OS=Brucella	yes	no	0.413	0.923	0.487	7e-26
B0CJT2	130	Protein ApaG OS=Brucella	yes	no	0.413	0.923	0.487	9e-26

>sp|Q2VZE7|APAG_MAGSA Protein ApaG OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=apaG PE=3 SV=1

 Score =  124 bits (311), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 81/121 (66%), Gaps = 3/121 (2%)

Query: 162 TTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENI 221
           TT  I V V+  Y++D+S P    + +AYRVRI N   R VQLLRRHW+ITDA G+ + +
Sbjct: 5   TTRDIEVTVKPFYLDDQSSPGDNHFVWAYRVRIVNKGSRTVQLLRRHWVITDAIGRVQEV 64

Query: 222 LGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLS 281
            G GV+GEQPV+ P  ++EY+S  PL TPSG M G +EM+  D  GS  F++AI  FSL 
Sbjct: 65  KGPGVVGEQPVLRPGDAYEYTSGTPLPTPSGIMVGTYEME--DEDGS-AFDIAIPAFSLD 121

Query: 282 T 282
           +
Sbjct: 122 S 122

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

>sp|Q0ASF3|APAG_MARMM Protein ApaG OS=Maricaulis maris (strain MCS10) GN=apaG PE=3 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/123 (47%), Positives = 80/123 (65%), Gaps = 3/123 (2%)

Query: 163 TLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENIL 222
           + G+R+ V   Y+ED S P +G++ +AY + I N  ++PVQL+ R W+ITDANG+TE++ 
Sbjct: 6   SCGVRISVSPDYLEDESTPEEGRFVWAYTIEIENTGKQPVQLIARKWMITDANGRTEHVQ 65

Query: 223 GVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLST 282
           G+GVIGEQPVI P   F Y+S  PL TPSG M G +EM+  D    ++F   I  FSL  
Sbjct: 66  GMGVIGEQPVIEPGGRFRYTSGAPLPTPSGFMSGSYEMRRGD---GESFAATIPDFSLDR 122

Query: 283 MGD 285
             D
Sbjct: 123 PSD 125

Maricaulis maris (strain MCS10) (taxid: 394221)

>sp|Q2IGT4|APAG_ANADE Protein ApaG OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=apaG PE=3 SV=1

 Score =  120 bits (302), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 78/127 (61%), Gaps = 5/127 (3%)

Query: 158 LSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGK 217
           +S A T GI V VRS +  +RS+P  G++ F+Y VR+ N  E P QL+ RHWII DANG+
Sbjct: 1   MSTAVTEGIEVTVRSTFRPERSEP--GRFLFSYSVRVVNQGEAPAQLVSRHWIIVDANGE 58

Query: 218 TENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAP 277
            E ++G GV+G+QP + P   FEY+S C L TP G M G + M   D    Q F+  IAP
Sbjct: 59  REEVVGDGVVGQQPHLEPGEHFEYTSFCVLKTPHGSMRGTYRMVRDD---GQAFDATIAP 115

Query: 278 FSLSTMG 284
           F L   G
Sbjct: 116 FPLVVPG 122

Anaeromyxobacter dehalogenans (strain 2CP-C) (taxid: 290397)

>sp|Q8UI68|APAG_AGRT5 Protein ApaG OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=apaG PE=3 SV=2

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 78/124 (62%), Gaps = 3/124 (2%)

Query: 161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTEN 220
           A T  I V V   Y+E++S P   +Y + Y+V I NNS+ PV+L+ R+W ITD NG+ + 
Sbjct: 4   ALTRDIEVTVDPYYLEEQSDPDDDRYVWGYKVVIANNSDVPVKLVNRYWHITDQNGQVDE 63

Query: 221 ILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSL 280
           + G GV+GEQP + P  S+EYSS CPL TPSG M G +EM+       + FNV I  FSL
Sbjct: 64  VYGPGVVGEQPQLKPGDSYEYSSGCPLDTPSGLMFGHYEME---TENGEVFNVTIPAFSL 120

Query: 281 STMG 284
            + G
Sbjct: 121 DSPG 124

Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299)

>sp|C3MFB9|APAG_RHISN Protein ApaG OS=Rhizobium sp. (strain NGR234) GN=apaG PE=3 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 81/124 (65%), Gaps = 3/124 (2%)

Query: 161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTEN 220
           A T  I V V   Y+E++S P   +Y + YR+ I+N+SE  V+L+ R+W ITD NG+ + 
Sbjct: 4   ALTRDIEVTVEPYYLEEQSDPDDSRYVWGYRIVISNHSEIAVRLMTRYWHITDENGQVDE 63

Query: 221 ILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSL 280
           + G GVIGEQP++ P  ++EYSS CPL TPSG M G + M+  D    +TFNVAI  FSL
Sbjct: 64  VSGPGVIGEQPLLNPGDTYEYSSGCPLDTPSGVMFGHYSMEAED---GETFNVAIPAFSL 120

Query: 281 STMG 284
            + G
Sbjct: 121 DSPG 124

Rhizobium sp. (strain NGR234) (taxid: 394)

>sp|A6U5R0|APAG_SINMW Protein ApaG OS=Sinorhizobium medicae (strain WSM419) GN=apaG PE=3 SV=1

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 80/124 (64%), Gaps = 3/124 (2%)

Query: 161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTEN 220
           A T  I V V   Y+E++S P   +Y + YR+ I N+S+  V+L+ R+W ITD NG+ + 
Sbjct: 4   ALTHDIEVTVEPYYLEEQSDPDDSRYVWGYRIIIANHSDVAVRLMTRYWHITDENGQVDE 63

Query: 221 ILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSL 280
           + G GVIGEQP++ P  ++EYSS CPL TPSG M G + M+     G +TFNVAI  FSL
Sbjct: 64  VSGPGVIGEQPLLNPGDTYEYSSGCPLDTPSGVMFGHYSME---AEGGETFNVAIPAFSL 120

Query: 281 STMG 284
            + G
Sbjct: 121 DSPG 124

Sinorhizobium medicae (strain WSM419) (taxid: 366394)

>sp|B4UHA8|APAG_ANASK Protein ApaG OS=Anaeromyxobacter sp. (strain K) GN=apaG PE=3 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/127 (48%), Positives = 78/127 (61%), Gaps = 5/127 (3%)

Query: 158 LSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGK 217
           +S A T GI V VRS +  +RS+P  G++ F+Y VRI N  E P QL+ R WII DANG+
Sbjct: 1   MSTAVTEGIEVTVRSTFRPERSEP--GRFLFSYTVRIANQGEVPAQLVSRRWIILDANGE 58

Query: 218 TENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAP 277
            E ++G GV+G+QP + P   FEY+S C L TP G M G + M    R G Q F+  IAP
Sbjct: 59  REEVVGDGVVGQQPHLEPGEHFEYTSFCVLKTPHGSMRGTYRMV---RDGGQAFDATIAP 115

Query: 278 FSLSTMG 284
           F L   G
Sbjct: 116 FPLVVPG 122

Anaeromyxobacter sp. (strain K) (taxid: 447217)

>sp|Q98BB4|APAG_RHILO Protein ApaG OS=Rhizobium loti (strain MAFF303099) GN=apaG PE=3 SV=1

 Score =  118 bits (296), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 80/124 (64%), Gaps = 3/124 (2%)

Query: 161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTEN 220
           A T  I VQVR  Y+EDRS P + +Y + Y++ I N S+  VQLL R+W ITD  G+ E 
Sbjct: 4   AVTRNIEVQVRPFYLEDRSDPSENRYVWGYQITIDNQSDEFVQLLSRYWHITDGAGRVEE 63

Query: 221 ILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSL 280
           + G GV+G+QP + P  S++Y+S CPLSTPSG M G + M++      +TF++AI  FSL
Sbjct: 64  VRGPGVVGDQPELNPGDSYQYTSGCPLSTPSGIMVGHYTMRNKR---GETFDIAIPAFSL 120

Query: 281 STMG 284
              G
Sbjct: 121 DLPG 124

Rhizobium loti (strain MAFF303099) (taxid: 266835)

>sp|Q8G2L5|APAG_BRUSU Protein ApaG OS=Brucella suis biovar 1 (strain 1330) GN=apaG PE=3 SV=1

 Score =  117 bits (294), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 79/123 (64%), Gaps = 3/123 (2%)

Query: 158 LSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGK 217
           +  A T GI V V   Y+E +S+P + +Y + YRV I NNS   VQL  R+W ITDANG 
Sbjct: 1   MYSAVTRGIEVTVEPFYLEVQSEPEENRYVWGYRVTIVNNSSETVQLCSRYWQITDANGH 60

Query: 218 TENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAP 277
            + + G GV+GEQPV+ P  S++YSS CPL+T SG M G ++MK  D  G+Q F + I  
Sbjct: 61  VQEVRGSGVVGEQPVLDPGASYQYSSGCPLTTSSGVMVGRYQMKGED--GAQ-FEIEIPA 117

Query: 278 FSL 280
           FSL
Sbjct: 118 FSL 120

Brucella suis biovar 1 (strain 1330) (taxid: 204722)

>sp|B0CJT2|APAG_BRUSI Protein ApaG OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=apaG PE=3 SV=1

 Score =  117 bits (293), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 79/123 (64%), Gaps = 3/123 (2%)

Query: 158 LSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGK 217
           +  A T GI V V   Y+E +S+P + +Y + YRV I NNS   VQL  R+W ITDANG 
Sbjct: 1   MYSAVTRGIEVTVEPFYLEVQSEPEENRYVWGYRVTIVNNSSETVQLCSRYWQITDANGH 60

Query: 218 TENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAP 277
            + + G GV+GEQPV+ P  S++YSS CPL+T SG M G ++MK  D  G+Q F + I  
Sbjct: 61  VQEVRGSGVVGEQPVLDPGDSYQYSSGCPLTTSSGVMVGRYQMKGED--GAQ-FEIEIPA 117

Query: 278 FSL 280
           FSL
Sbjct: 118 FSL 120

Brucella suis (strain ATCC 23445 / NCTC 10510) (taxid: 470137)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
297733766	375	unnamed protein product [Vitis vinifera]	0.910	0.704	0.712	1e-111
225457005	277	PREDICTED: uncharacterized protein LOC10	0.893	0.935	0.721	1e-110
147841526	223	hypothetical protein VITISV_003764 [Viti	0.748	0.973	0.843	1e-106
224133570	285	predicted protein [Populus trichocarpa]	0.886	0.901	0.743	1e-105
224119374	283	predicted protein [Populus trichocarpa]	0.734	0.752	0.821	1e-101
449469699	261	PREDICTED: F-box protein SKIP16-like [Cu	0.862	0.957	0.711	1e-101
242089717	290	hypothetical protein SORBIDRAFT_09g00520	0.731	0.731	0.806	1e-100
222630358	300	hypothetical protein OsJ_17287 [Oryza sa	0.737	0.713	0.794	1e-100
115462343	300	Os05g0170800 [Oryza sativa Japonica Grou	0.737	0.713	0.794	1e-100
169730490	300	SKIP interacting protein 10 [Oryza sativ	0.737	0.713	0.789	5e-99

>gi|297733766|emb|CBI15013.3| unnamed protein product [Vitis vinifera]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/285 (71%), Positives = 228/285 (80%), Gaps = 21/285 (7%)

Query: 19  RRRRCLSYNNSLDLEYGRRR-------------RVGRGCKDLTRTYGIVACVGGGGGGSG 65
           R    LS+    DL  GR R             + G  C+D  R   I AC       SG
Sbjct: 97  REMHALSFKGFPDLNVGRERSWPGRLYHCTGTRKDGWNCRDFRRNCRIFAC------SSG 150

Query: 66  GGGERLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRR 125
             GE  S S  SFLSRSQ YALLKQQ++VAAK+EDYKEAAR+RDSLR FEEEEP+ RLRR
Sbjct: 151 ANGENQSPS--SFLSRSQTYALLKQQLQVAAKSEDYKEAARLRDSLRLFEEEEPVLRLRR 208

Query: 126 LMKEAVAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQ 185
           L+KEAVA+ERFEDAARYRD+LKEIAP+SLLKC SDATT+GIRVQVRSVYIE RSQP KGQ
Sbjct: 209 LIKEAVADERFEDAARYRDELKEIAPHSLLKCSSDATTVGIRVQVRSVYIEGRSQPSKGQ 268

Query: 186 YFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSAC 245
           +FFAYR+RITNNS+RPVQLLRRHWIITDANGK E++ G+GVIGEQPVILP T FEYSSAC
Sbjct: 269 FFFAYRIRITNNSDRPVQLLRRHWIITDANGKIEHVWGIGVIGEQPVILPRTGFEYSSAC 328

Query: 246 PLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGDDSDSF 290
           PLSTP+GRMEGDFEMKH+D+VGSQTFNVAIAPFSLST+GD+SD+F
Sbjct: 329 PLSTPNGRMEGDFEMKHIDKVGSQTFNVAIAPFSLSTLGDESDTF 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457005|ref|XP_002282383.1| PREDICTED: uncharacterized protein LOC100267315 [Vitis vinifera]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/280 (72%), Positives = 227/280 (81%), Gaps = 21/280 (7%)

Query: 24  LSYNNSLDLEYGRRR-------------RVGRGCKDLTRTYGIVACVGGGGGGSGGGGER 70
           LS+    DL  GR R             + G  C+D  R   I AC       SG  GE 
Sbjct: 4   LSFKGFPDLNVGRERSWPGRLYHCTGTRKDGWNCRDFRRNCRIFAC------SSGANGEN 57

Query: 71  LSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEA 130
            S S  SFLSRSQ YALLKQQ++VAAK+EDYKEAAR+RDSLR FEEEEP+ RLRRL+KEA
Sbjct: 58  QSPS--SFLSRSQTYALLKQQLQVAAKSEDYKEAARLRDSLRLFEEEEPVLRLRRLIKEA 115

Query: 131 VAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAY 190
           VA+ERFEDAARYRD+LKEIAP+SLLKC SDATT+GIRVQVRSVYIE RSQP KGQ+FFAY
Sbjct: 116 VADERFEDAARYRDELKEIAPHSLLKCSSDATTVGIRVQVRSVYIEGRSQPSKGQFFFAY 175

Query: 191 RVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTP 250
           R+RITNNS+RPVQLLRRHWIITDANGK E++ G+GVIGEQPVILP T FEYSSACPLSTP
Sbjct: 176 RIRITNNSDRPVQLLRRHWIITDANGKIEHVWGIGVIGEQPVILPRTGFEYSSACPLSTP 235

Query: 251 SGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGDDSDSF 290
           +GRMEGDFEMKH+D+VGSQTFNVAIAPFSLST+GD+SD+F
Sbjct: 236 NGRMEGDFEMKHIDKVGSQTFNVAIAPFSLSTLGDESDTF 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841526|emb|CAN75322.1| hypothetical protein VITISV_003764 [Vitis vinifera]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/217 (84%), Positives = 205/217 (94%)

Query: 74  SARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAE 133
           S  SFLSRSQ YALLKQQ++VAAK+EDYKEAAR+RDSLR FEEEEP+ RLRRL+KEAVA+
Sbjct: 5   SPSSFLSRSQTYALLKQQLQVAAKSEDYKEAARLRDSLRLFEEEEPVLRLRRLIKEAVAD 64

Query: 134 ERFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVR 193
           ERFEDAARYRD+LKEIAP+SLLKC SDATT+GIRVQVRSVYIE RSQP KGQ+FFAYR+R
Sbjct: 65  ERFEDAARYRDELKEIAPHSLLKCSSDATTVGIRVQVRSVYIEGRSQPSKGQFFFAYRIR 124

Query: 194 ITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGR 253
           ITNNS+RPVQLLRRHWIITDANGK E++ G+GVIGEQPVILP T FEYSSACPLSTP+GR
Sbjct: 125 ITNNSDRPVQLLRRHWIITDANGKIEHVWGIGVIGEQPVILPRTGFEYSSACPLSTPNGR 184

Query: 254 MEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGDDSDSF 290
           MEGDFEMKH+D+VGSQTFNVAIAPFSLST+GD+SD+F
Sbjct: 185 MEGDFEMKHIDKVGSQTFNVAIAPFSLSTLGDESDTF 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133570|ref|XP_002321607.1| predicted protein [Populus trichocarpa] gi|222868603|gb|EEF05734.1| predicted protein [Populus trichocarpa]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/261 (74%), Positives = 214/261 (81%), Gaps = 4/261 (1%)

Query: 34  YGRRRRVGRGCKDLTRTYGIVACV----GGGGGGSGGGGERLSSSARSFLSRSQAYALLK 89
           +G   R     ++ +R   IVAC     GGG G S         S  SFLSRSQ YA+LK
Sbjct: 25  FGTEWRQCLNLRNYSRNCRIVACSVERDGGGEGASSSSSSSSDPSPSSFLSRSQTYAMLK 84

Query: 90  QQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149
           QQMEVAA++EDY+EAAR+RDSLRSFEE EP+ RLRRL+KEAVA+ERFEDA RYRD+LKEI
Sbjct: 85  QQMEVAAQSEDYEEAARLRDSLRSFEEVEPVLRLRRLLKEAVADERFEDATRYRDELKEI 144

Query: 150 APNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHW 209
           AP SLLKC SDATTLGIRVQVRSVYIE RSQP KGQYFFAYR+RITNNS+RPVQLLRRHW
Sbjct: 145 APLSLLKCSSDATTLGIRVQVRSVYIEGRSQPSKGQYFFAYRIRITNNSDRPVQLLRRHW 204

Query: 210 IITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQ 269
           IITDANGKTEN  GVGVIGEQPVILP T FEYSSACPL TP+GRMEGDFEMKH+D+ GS 
Sbjct: 205 IITDANGKTENFWGVGVIGEQPVILPRTGFEYSSACPLCTPNGRMEGDFEMKHIDKAGSP 264

Query: 270 TFNVAIAPFSLSTMGDDSDSF 290
           TFNVAIAPFSLS +GD SD+F
Sbjct: 265 TFNVAIAPFSLSILGDGSDAF 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119374|ref|XP_002318056.1| predicted protein [Populus trichocarpa] gi|222858729|gb|EEE96276.1| predicted protein [Populus trichocarpa]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/213 (82%), Positives = 196/213 (92%)

Query: 78  FLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFE 137
           FLSRSQ YA+LKQQMEVAA++EDY+EAARIRDSL+SFEEEEP+ RL RL+KEAVA+E+FE
Sbjct: 71  FLSRSQTYAMLKQQMEVAAQSEDYEEAARIRDSLKSFEEEEPVLRLHRLLKEAVADEQFE 130

Query: 138 DAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNN 197
           DAARYRD+LKEI P+SLLKC SDATTLGIR QVRS+YIE RSQP KGQYFFAYR+RITNN
Sbjct: 131 DAARYRDELKEIVPHSLLKCSSDATTLGIRNQVRSLYIEGRSQPSKGQYFFAYRIRITNN 190

Query: 198 SERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGD 257
           S+RPVQLLRRHWIITDA GKTEN+ GVGVIGEQPVILP T+FEYSSACPL TP+GRMEGD
Sbjct: 191 SDRPVQLLRRHWIITDAKGKTENVWGVGVIGEQPVILPRTAFEYSSACPLCTPNGRMEGD 250

Query: 258 FEMKHVDRVGSQTFNVAIAPFSLSTMGDDSDSF 290
           FEMKH+D+ GS  FNVAIAPFSLS +GD SD+F
Sbjct: 251 FEMKHIDKAGSPAFNVAIAPFSLSILGDGSDAF 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469699|ref|XP_004152556.1| PREDICTED: F-box protein SKIP16-like [Cucumis sativus] gi|449487861|ref|XP_004157837.1| PREDICTED: F-box protein SKIP16-like [Cucumis sativus]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/260 (71%), Positives = 211/260 (81%), Gaps = 10/260 (3%)

Query: 34  YGRRRRVGRGCKDLTRTYGIVACVGGGGGGSGGGGERLSSSARSFLSRS---QAYALLKQ 90
           +G RR  GR C+       IVAC      G GG G+  S+S     S     + YALLKQ
Sbjct: 9   FGGRRAFGRSCR-------IVACASERNIGDGGEGQSQSASTSRSRSFLSRSETYALLKQ 61

Query: 91  QMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150
           Q+EVAAK+EDY+EAARIRDSL+ FEEEEP+ RLRRLMKEA++ ERFEDAA+YRD+L EIA
Sbjct: 62  QLEVAAKSEDYEEAARIRDSLKLFEEEEPVLRLRRLMKEAISSERFEDAAKYRDELNEIA 121

Query: 151 PNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWI 210
           P+ LLKC SDATTLGIRVQVRSVYIE RSQP K QYFFAYR+RITNNS RPVQLLRRHWI
Sbjct: 122 PHCLLKCASDATTLGIRVQVRSVYIEGRSQPSKNQYFFAYRIRITNNSNRPVQLLRRHWI 181

Query: 211 ITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQT 270
           ITDANGKTEN+ GVGVIGEQPVILP T FEYSSACPL+T +GRMEGDFEMK++DRVG Q+
Sbjct: 182 ITDANGKTENVWGVGVIGEQPVILPKTGFEYSSACPLTTANGRMEGDFEMKYIDRVGEQS 241

Query: 271 FNVAIAPFSLSTMGDDSDSF 290
           FNVAIAPFSLS +GD +++F
Sbjct: 242 FNVAIAPFSLSIIGDSTEAF 261

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242089717|ref|XP_002440691.1| hypothetical protein SORBIDRAFT_09g005200 [Sorghum bicolor] gi|241945976|gb|EES19121.1| hypothetical protein SORBIDRAFT_09g005200 [Sorghum bicolor]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/212 (80%), Positives = 193/212 (91%)

Query: 77  SFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERF 136
           S L RSQ YA+LKQQ+ VAA+ EDYKEAAR+RDSLRSFEEEEP+ RLRRLMK+A+ EERF
Sbjct: 76  SLLMRSQKYAMLKQQLAVAAQFEDYKEAARLRDSLRSFEEEEPVLRLRRLMKKAIDEERF 135

Query: 137 EDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITN 196
           EDAA+YRD+L  +AP+SLLKC SDATTLGIRVQVRSVYIE RSQPLKGQ+FFAYR+RITN
Sbjct: 136 EDAAKYRDELMILAPHSLLKCSSDATTLGIRVQVRSVYIESRSQPLKGQFFFAYRIRITN 195

Query: 197 NSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEG 256
           NS+RPVQLLRRHWI+TD NG+TENI GVGV+GEQPVI P T FEYSSACPLSTP+GRMEG
Sbjct: 196 NSQRPVQLLRRHWIVTDGNGRTENIWGVGVVGEQPVIFPKTGFEYSSACPLSTPNGRMEG 255

Query: 257 DFEMKHVDRVGSQTFNVAIAPFSLSTMGDDSD 288
           DFEMKH+D+ GS TFNVAIAPFSLS +GDD+D
Sbjct: 256 DFEMKHIDKAGSSTFNVAIAPFSLSILGDDND 287

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222630358|gb|EEE62490.1| hypothetical protein OsJ_17287 [Oryza sativa Japonica Group]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/214 (79%), Positives = 196/214 (91%)

Query: 75  ARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEE 134
           A +FL RSQ YA+LKQQ+ VAA+ EDYKEAAR+RDSL+SFEEEEP+ RLRR +K+AV EE
Sbjct: 83  AAAFLMRSQKYAMLKQQLAVAAQFEDYKEAARLRDSLKSFEEEEPVLRLRRSLKKAVEEE 142

Query: 135 RFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRI 194
           RFEDAA+YRD+LK +AP++LLKC SDATTLGIRVQVRSVYIE RSQPLKGQ+FFAYR+RI
Sbjct: 143 RFEDAAKYRDELKILAPHALLKCSSDATTLGIRVQVRSVYIESRSQPLKGQFFFAYRIRI 202

Query: 195 TNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRM 254
           TNNS+RPVQLLRRHWI+TDANG+TENI GVGV+GEQPVI P T FEYSSACPL+TP+GRM
Sbjct: 203 TNNSQRPVQLLRRHWIVTDANGRTENIWGVGVVGEQPVIFPRTGFEYSSACPLNTPNGRM 262

Query: 255 EGDFEMKHVDRVGSQTFNVAIAPFSLSTMGDDSD 288
           EGDFEMKH+D+ GS TFNVAIAPFSLS +GDD+D
Sbjct: 263 EGDFEMKHIDKAGSSTFNVAIAPFSLSILGDDND 296

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115462343|ref|NP_001054771.1| Os05g0170800 [Oryza sativa Japonica Group] gi|52353765|gb|AAU44331.1| unknown protein [Oryza sativa Japonica Group] gi|113578322|dbj|BAF16685.1| Os05g0170800 [Oryza sativa Japonica Group] gi|125550999|gb|EAY96708.1| hypothetical protein OsI_18629 [Oryza sativa Indica Group]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/214 (79%), Positives = 196/214 (91%)

Query: 75  ARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEE 134
           A +FL RSQ YA+LKQQ+ VAA+ EDYKEAAR+RDSL+SFEEEEP+ RLRR +K+AV EE
Sbjct: 83  AAAFLMRSQKYAMLKQQLAVAAQFEDYKEAARLRDSLKSFEEEEPVLRLRRSLKKAVEEE 142

Query: 135 RFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRI 194
           RFEDAA+YRD+LK +AP++LLKC SDATTLGIRVQVRSVYIE RSQPLKGQ+FFAYR+RI
Sbjct: 143 RFEDAAKYRDELKILAPHALLKCSSDATTLGIRVQVRSVYIESRSQPLKGQFFFAYRIRI 202

Query: 195 TNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRM 254
           TNNS+RPVQLLRRHWI+TDANG+TENI GVGV+GEQPVI P T FEYSSACPL+TP+GRM
Sbjct: 203 TNNSQRPVQLLRRHWIVTDANGRTENIWGVGVVGEQPVIFPRTGFEYSSACPLNTPNGRM 262

Query: 255 EGDFEMKHVDRVGSQTFNVAIAPFSLSTMGDDSD 288
           EGDFEMKH+D+ GS TFNVAIAPFSLS +GDD+D
Sbjct: 263 EGDFEMKHIDKAGSSTFNVAIAPFSLSILGDDND 296

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|169730490|gb|ACA64811.1| SKIP interacting protein 10 [Oryza sativa]

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 169/214 (78%), Positives = 195/214 (91%)

Query: 75  ARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEE 134
           A +FL RSQ YA+LKQQ+ VAA+ EDYKEAAR+RDSL+SFEEEEP+ RLRR +K+AV EE
Sbjct: 83  AAAFLMRSQKYAMLKQQLAVAAQFEDYKEAARLRDSLKSFEEEEPVLRLRRSLKKAVEEE 142

Query: 135 RFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRI 194
           RFEDAA+YRD+LK +AP++LLKC SDATTLGIRVQVRSVYIE RSQPLKGQ+FFAYR+RI
Sbjct: 143 RFEDAAKYRDELKILAPHALLKCSSDATTLGIRVQVRSVYIESRSQPLKGQFFFAYRIRI 202

Query: 195 TNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRM 254
           TNNS+RPVQLLRRHWI+TDANG+TENI GVGV+GEQPVI P T FEYSSACPL+TP+GRM
Sbjct: 203 TNNSQRPVQLLRRHWIVTDANGRTENIWGVGVVGEQPVIFPRTGFEYSSACPLNTPNGRM 262

Query: 255 EGDFEMKHVDRVGSQTFNVAIAPFSLSTMGDDSD 288
           EGD EMKH+D+ GS TFNVAIAPFSLS +GDD+D
Sbjct: 263 EGDXEMKHIDKAGSSTFNVAIAPFSLSILGDDND 296

Source: Oryza sativa

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
UNIPROTKB|Q8EB92	126	apaG "Protein ApaG" [Shewanell	0.4	0.920	0.478	4.2e-24
TIGR_CMR|SO_3640	126	SO_3640 "apaG protein" [Shewan	0.4	0.920	0.478	4.2e-24
UNIPROTKB|Q60C69	126	apaG "Protein ApaG" [Methyloco	0.389	0.896	0.439	2.6e-22
UNIPROTKB|Q0BYU0	138	apaG "ApaG protein" [Hyphomona	0.427	0.898	0.387	3e-21
UNIPROTKB|Q2GFG4	134	apaG "Protein ApaG" [Ehrlichia	0.396	0.858	0.435	3e-21
TIGR_CMR|ECH_1033	134	ECH_1033 "apaG protein" [Ehrli	0.396	0.858	0.435	3e-21
UNIPROTKB|Q9KUS3	126	apaG "Protein ApaG" [Vibrio ch	0.389	0.896	0.448	8e-21
TIGR_CMR|VC_0442	126	VC_0442 "apaG protein" [Vibrio	0.389	0.896	0.448	8e-21
UNIPROTKB|Q2GIY5	135	apaG "ApaG protein" [Anaplasma	0.444	0.955	0.413	7.2e-20
TIGR_CMR|APH_1120	135	APH_1120 "apaG protein" [Anapl	0.444	0.955	0.413	7.2e-20

UNIPROTKB|Q8EB92 apaG "Protein ApaG" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 57/119 (47%), Positives = 74/119 (62%)

Query:   166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVG 225
             IRV+V++ YIE +S P   +Y F+Y + I N  E+  +L  RHWIITDANGKT  + G G
Sbjct:     8 IRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAG 67

Query:   226 VIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMG 284
             V+GE P I PNT+++Y+S   L TP G M G + M  V   G   FN  I PF L+T G
Sbjct:    68 VVGETPTIPPNTAYQYTSGTVLDTPFGIMYGTYGM--VSESGEH-FNAIIKPFRLATPG 123

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_3640 SO_3640 "apaG protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 57/119 (47%), Positives = 74/119 (62%)

Query:   166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVG 225
             IRV+V++ YIE +S P   +Y F+Y + I N  E+  +L  RHWIITDANGKT  + G G
Sbjct:     8 IRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAG 67

Query:   226 VIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMG 284
             V+GE P I PNT+++Y+S   L TP G M G + M  V   G   FN  I PF L+T G
Sbjct:    68 VVGETPTIPPNTAYQYTSGTVLDTPFGIMYGTYGM--VSESGEH-FNAIIKPFRLATPG 123

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q60C69 apaG "Protein ApaG" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 51/116 (43%), Positives = 73/116 (62%)

Query:   166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVG 225
             ++V+V++VY+ + S+P   QY FAY V + N    P +LL R WIITDANGKT  ++G G
Sbjct:     8 LKVEVKAVYLREHSRPDAHQYTFAYTVTMENTGTVPAKLLGRRWIITDANGKTVEVVGEG 67

Query:   226 VIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLS 281
             V+GE P + P  +FEY+SA  ++TP G M G +++   D      F   IA FSL+
Sbjct:    68 VVGEHPYLRPGEAFEYTSAATIATPVGSMHGSYQLIADD---GMPFEAPIAAFSLA 120

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q0BYU0 apaG "ApaG protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 50/129 (38%), Positives = 79/129 (61%)

Query:   160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTE 219
             +A T G+R++VR  ++ D S+P + ++ + Y V + N S+R   ++RRHW I D+ G+ +
Sbjct:    11 EAITDGVRIRVRPKFLHDESEPTRAKFMWQYTVEVENESDRTWTIIRRHWRIVDSAGRLQ 70

Query:   220 NILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAP-F 278
              + G GVIG+ P + P   F Y+S  PL+TPSG M G +++  VD  G +   VA+ P F
Sbjct:    71 AVDGEGVIGQTPTVGPGQRFSYTSGAPLATPSGMMTGTYDL--VDDAGEEM--VAMIPAF 126

Query:   279 SLSTMGDDS 287
             SL +  D S
Sbjct:   127 SLDSPYDTS 135

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GFG4 apaG "Protein ApaG" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 51/117 (43%), Positives = 72/117 (61%)

Query:   166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVG 225
             I V+V   Y+E++S P +  Y + Y +R+ N S   VQLLRR W I D+ G    + G+G
Sbjct:    12 IEVKVVPSYLEEQSAPHENCYIWLYNIRVKNKSNSTVQLLRRSWKIIDSTGVINEVTGLG 71

Query:   226 VIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLST 282
             VIG+QPV+ P   FEY+S   LSTPSG M G+++   +D   +Q F V+I  FSL +
Sbjct:    72 VIGKQPVLKPGEFFEYTSGAYLSTPSGMMHGEYQF--MDEDAAQVFYVSIPMFSLDS 126

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|ECH_1033 ECH_1033 "apaG protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 51/117 (43%), Positives = 72/117 (61%)

Query:   166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVG 225
             I V+V   Y+E++S P +  Y + Y +R+ N S   VQLLRR W I D+ G    + G+G
Sbjct:    12 IEVKVVPSYLEEQSAPHENCYIWLYNIRVKNKSNSTVQLLRRSWKIIDSTGVINEVTGLG 71

Query:   226 VIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLST 282
             VIG+QPV+ P   FEY+S   LSTPSG M G+++   +D   +Q F V+I  FSL +
Sbjct:    72 VIGKQPVLKPGEFFEYTSGAYLSTPSGMMHGEYQF--MDEDAAQVFYVSIPMFSLDS 126

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KUS3 apaG "Protein ApaG" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 52/116 (44%), Positives = 74/116 (63%)

Query:   166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVG 225
             I++QV++ YIE++S P   ++ FAY + I N S + VQL+ R W+ITDA+GK   + G G
Sbjct:     8 IKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDG 67

Query:   226 VIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLS 281
             V+GEQP I  N  + YSS   L TP G M+G + M  +D  G ++F V I PF L+
Sbjct:    68 VVGEQPRIKANDEYTYSSGTALDTPVGVMQGQYLM--IDEQG-ESFTVEIEPFRLA 120

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0442 VC_0442 "apaG protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 52/116 (44%), Positives = 74/116 (63%)

Query:   166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVG 225
             I++QV++ YIE++S P   ++ FAY + I N S + VQL+ R W+ITDA+GK   + G G
Sbjct:     8 IKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDG 67

Query:   226 VIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLS 281
             V+GEQP I  N  + YSS   L TP G M+G + M  +D  G ++F V I PF L+
Sbjct:    68 VVGEQPRIKANDEYTYSSGTALDTPVGVMQGQYLM--IDEQG-ESFTVEIEPFRLA 120

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GIY5 apaG "ApaG protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 55/133 (41%), Positives = 75/133 (56%)

Query:   153 SLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIIT 212
             ++L+C  +A    I V+V   Y+E+ S P +  Y + Y VRI N S+  VQLL+R W I 
Sbjct:     2 TVLECGKEAGL--IEVEVTPSYLEEHSIPHENCYIWLYSVRINNRSDSTVQLLKRSWKII 59

Query:   213 DANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFN 272
             D+ G    + G GV G QPV+ P   FEY+S   LSTPSG M G ++   VD   +Q F 
Sbjct:    60 DSKGVVNEVSGSGVAGSQPVLKPGAFFEYTSGTCLSTPSGVMNGWYQF--VDEDKAQVFY 117

Query:   273 VAIAPFSLSTMGD 285
             V +  FSL +  D
Sbjct:   118 VDVPAFSLDSPYD 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|APH_1120 APH_1120 "apaG protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 55/133 (41%), Positives = 75/133 (56%)

Query:   153 SLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIIT 212
             ++L+C  +A    I V+V   Y+E+ S P +  Y + Y VRI N S+  VQLL+R W I 
Sbjct:     2 TVLECGKEAGL--IEVEVTPSYLEEHSIPHENCYIWLYSVRINNRSDSTVQLLKRSWKII 59

Query:   213 DANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFN 272
             D+ G    + G GV G QPV+ P   FEY+S   LSTPSG M G ++   VD   +Q F 
Sbjct:    60 DSKGVVNEVSGSGVAGSQPVLKPGAFFEYTSGTCLSTPSGVMNGWYQF--VDEDKAQVFY 117

Query:   273 VAIAPFSLSTMGD 285
             V +  FSL +  D
Sbjct:   118 VDVPAFSLDSPYD 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	290
PRK05461	127	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Rev	8e-62
COG2967	126	COG2967, ApaG, Uncharacterized protein affecting M	3e-50
pfam04379	90	pfam04379, DUF525, Protein of unknown function (DU	3e-44
pfam02151	36	pfam02151, UVR, UvrB/uvrC motif	2e-07
TIGR00631	655	TIGR00631, uvrb, excinuclease ABC, B subunit	6e-06
PRK05298	652	PRK05298, PRK05298, excinuclease ABC subunit B; Pr	1e-05
PRK00558	598	PRK00558, uvrC, excinuclease ABC subunit C; Valida	7e-05
pfam02151	36	pfam02151, UVR, UvrB/uvrC motif	9e-05
COG0556	663	COG0556, UvrB, Helicase subunit of the DNA excisio	9e-05
PRK00558	598	PRK00558, uvrC, excinuclease ABC subunit C; Valida	1e-04
PRK07883	557	PRK07883, PRK07883, hypothetical protein; Validate	1e-04
COG0322	581	COG0322, UvrC, Nuclease subunit of the excinucleas	9e-04
COG0556	663	COG0556, UvrB, Helicase subunit of the DNA excisio	0.004

>gnl|CDD|180098 PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed

 Score =  191 bits (487), Expect = 8e-62
 Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 3/123 (2%)

Query: 159 SDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKT 218
             A T GI V V+  Y+E++S P +G+Y FAY + I N    PVQLL RHW+ITDANG+ 
Sbjct: 2   YSAVTYGIEVSVQPRYLEEQSDPEEGRYVFAYTITIENLGRVPVQLLSRHWLITDANGRV 61

Query: 219 ENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPF 278
           + + G GV+GEQPV+ P  SFEY+S   L TPSG M+G ++M  VD  G + F V I PF
Sbjct: 62  QEVRGEGVVGEQPVLAPGESFEYTSGAVLETPSGTMQGHYQM--VDEDG-ERFEVPIPPF 118

Query: 279 SLS 281
            L+
Sbjct: 119 RLA 121

Length = 127

>gnl|CDD|225515 COG2967, ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]

 Score =  161 bits (410), Expect = 3e-50
 Identities = 59/122 (48%), Positives = 83/122 (68%), Gaps = 3/122 (2%)

Query: 160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTE 219
            A++  I VQV+  Y+E++S P + +Y FAY V I N  E PVQLL R+W+ITD NG+  
Sbjct: 2   MASSPDIEVQVQPRYLEEQSSPEEERYVFAYTVTIRNLGEVPVQLLSRYWLITDGNGRVT 61

Query: 220 NILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFS 279
            + G GV+GEQP++ P   ++Y+S CPL TPSG M+G +EM  +D  G +TF+VAI  F 
Sbjct: 62  EVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGTMQGHYEM--IDEDG-ETFDVAIPVFR 118

Query: 280 LS 281
           L+
Sbjct: 119 LA 120

Length = 126

>gnl|CDD|202989 pfam04379, DUF525, Protein of unknown function (DUF525)

 Score =  144 bits (367), Expect = 3e-44
 Identities = 48/86 (55%), Positives = 60/86 (69%)

Query: 175 IEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVIL 234
           + ++S P +G+Y FAY + I N     VQLL RHWIITDANGK E + G GV+GEQP++ 
Sbjct: 1   LPEQSSPEEGRYVFAYTITIENLGPETVQLLSRHWIITDANGKVEEVRGEGVVGEQPLLA 60

Query: 235 PNTSFEYSSACPLSTPSGRMEGDFEM 260
           P  SFEY+S  PL TPSG MEG + M
Sbjct: 61  PGESFEYTSGTPLETPSGSMEGSYTM 86

Members of this family include the bacterial protein ApaG and the C termini of some F-box proteins (pfam00646). F-box proteins contain a carboxyl-terminal domain that interacts with protein substrates, so this family may be involved in protein-protein interaction. The function of ApaG proteins is unknown, but mutations in the Salmonella typhimurium ApaG homologue corD gives a phenotype of low-level cobalt resistance and decreased magnesium efflux by effects on the CorA magnesium transport system. Length = 90

>gnl|CDD|145355 pfam02151, UVR, UvrB/uvrC motif

 Score = 45.9 bits (110), Expect = 2e-07
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149
           ++ I  L   M+EA  EE FE AA+ RD++K +
Sbjct: 1   KKLIKELEEEMEEAAEEEDFEKAAKLRDQIKAL 33

Length = 36

>gnl|CDD|233063 TIGR00631, uvrb, excinuclease ABC, B subunit

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 86  ALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDK 145
            +L  +++        K+       L   E ++ I +L + MK+A     FE+AAR RD+
Sbjct: 591 DILDIELKEKEDAAKKKKKGEDLSDLSKKELKKLIKQLEKEMKQAARNLEFEEAARLRDE 650

Query: 146 LKEI 149
           + E+
Sbjct: 651 ILEL 654

All proteins in this family for wich functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 655

>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional

 Score = 46.2 bits (111), Expect = 1e-05
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 9/53 (16%)

Query: 106 RIRDSLRSFEEEEP---------IFRLRRLMKEAVAEERFEDAARYRDKLKEI 149
           +IRD L S  +++          I  L + MKEA     FE+AAR RD++KE+
Sbjct: 592 KIRDILDSVYKKDKLSKKELEKLIKELEKQMKEAAKNLEFEEAARLRDEIKEL 644

Length = 652

>gnl|CDD|234792 PRK00558, uvrC, excinuclease ABC subunit C; Validated

 Score = 44.0 bits (105), Expect = 7e-05
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 15/77 (19%)

Query: 75  ARSFLS-RSQAY-ALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLM-KEAV 131
           A+ FLS ++      L+++ME A++  +++ AAR RD +++         LRR+  K+ V
Sbjct: 192 AKLFLSGKTDEVLKELEEKMEEASENLEFERAARYRDQIQA---------LRRVQEKQKV 242

Query: 132 AEERFEDA---ARYRDK 145
           + +  EDA   A   D 
Sbjct: 243 SLKDGEDADVIAIAVDG 259

Length = 598

>gnl|CDD|145355 pfam02151, UVR, UvrB/uvrC motif

 Score = 38.5 bits (91), Expect = 9e-05
 Identities = 12/30 (40%), Positives = 26/30 (86%)

Query: 88  LKQQMEVAAKTEDYKEAARIRDSLRSFEEE 117
           L+++ME AA+ ED+++AA++RD +++ E++
Sbjct: 7   LEEEMEEAAEEEDFEKAAKLRDQIKALEKQ 36

Length = 36

>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

 Score = 43.3 bits (103), Expect = 9e-05
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 99  EDYKEAARIRDSLRSFEE-EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149
           ++YK     + S  S +E E+ I +L + MKEA     FE+AAR RD++KE+
Sbjct: 604 DEYKAKIEKKASKMSKKELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKEL 655

Length = 663

>gnl|CDD|234792 PRK00558, uvrC, excinuclease ABC subunit C; Validated

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 99  EDYKEAAR-IRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLK 147
           E+Y E     +  L   + +E +  L   M+EA     FE AARYRD+++
Sbjct: 183 EEYAELVDEAKLFLSG-KTDEVLKELEEKMEEASENLEFERAARYRDQIQ 231

Length = 598

>gnl|CDD|236123 PRK07883, PRK07883, hypothetical protein; Validated

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 99  EDY-KEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146
            +Y +  AR R +L   +++  +  LR  +    A ERFE+AAR RD+L
Sbjct: 387 AEYAEAVARARAALTG-DDDAVLAALRARIDRLAAAERFEEAARLRDRL 434

Length = 557

>gnl|CDD|223399 COG0322, UvrC, Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 93  EVAAKTEDYKEAARIRDSLRSF---EEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149
                 E+Y+E     + ++ F   +++  +  L   M+EA     FE AAR RD++K +
Sbjct: 177 VGLISEEEYREIV---EEVKGFLKGKDDAVLQELEEKMEEASENLDFERAARLRDQIKAL 233

Length = 581

>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 13/30 (43%), Positives = 24/30 (80%)

Query: 88  LKQQMEVAAKTEDYKEAARIRDSLRSFEEE 117
           L+++M+ AAK  +++EAAR+RD ++  +EE
Sbjct: 629 LEKEMKEAAKNLEFEEAARLRDEIKELKEE 658

Length = 663

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
COG2967	126	ApaG Uncharacterized protein affecting Mg2+/Co2+ t	100.0
PRK05461	127	apaG CO2+/MG2+ efflux protein ApaG; Reviewed	100.0
PF04379	90	DUF525: Protein of unknown function (DUF525); Inte	100.0
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	100.0
COG3880	176	Modulator of heat shock repressor CtsR, McsA [Sign	99.03
COG3880	176	Modulator of heat shock repressor CtsR, McsA [Sign	98.03
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	97.79
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	97.72
PRK05298	652	excinuclease ABC subunit B; Provisional	94.09
PRK07883	557	hypothetical protein; Validated	93.47
PRK00558	598	uvrC excinuclease ABC subunit C; Validated	93.42
TIGR00631	655	uvrb excinuclease ABC, B subunit. This family is b	93.3
TIGR00631	655	uvrb excinuclease ABC, B subunit. This family is b	92.95
PRK14666	694	uvrC excinuclease ABC subunit C; Provisional	92.95
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	92.91
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	92.91
PRK12306	519	uvrC excinuclease ABC subunit C; Reviewed	92.8
PRK07883	557	hypothetical protein; Validated	92.39
PF11611	123	DUF4352: Domain of unknown function (DUF4352); Int	92.36
TIGR00194	574	uvrC excinuclease ABC, C subunit. This family cons	92.35
PRK14667	567	uvrC excinuclease ABC subunit C; Provisional	92.3
PRK14669	624	uvrC excinuclease ABC subunit C; Provisional	92.29
PF14263	124	DUF4354: Domain of unknown function (DUF4354); PDB	92.29
PRK14670	574	uvrC excinuclease ABC subunit C; Provisional	92.27
PRK00558	598	uvrC excinuclease ABC subunit C; Validated	92.09
PRK14672	691	uvrC excinuclease ABC subunit C; Provisional	92.08
PRK14671	621	uvrC excinuclease ABC subunit C; Provisional	91.95
PRK14668	577	uvrC excinuclease ABC subunit C; Provisional	91.93
PRK05298	652	excinuclease ABC subunit B; Provisional	91.92
PRK12306	519	uvrC excinuclease ABC subunit C; Reviewed	90.79
PRK14666	694	uvrC excinuclease ABC subunit C; Provisional	90.7
PHA02571	109	a-gt.4 hypothetical protein; Provisional	90.14
PRK14668	577	uvrC excinuclease ABC subunit C; Provisional	90.05
PRK14671	621	uvrC excinuclease ABC subunit C; Provisional	90.0
PRK14667	567	uvrC excinuclease ABC subunit C; Provisional	89.99
COG0322	581	UvrC Nuclease subunit of the excinuclease complex	89.78
PRK14670	574	uvrC excinuclease ABC subunit C; Provisional	89.65
PRK14669	624	uvrC excinuclease ABC subunit C; Provisional	89.61
PRK14672	691	uvrC excinuclease ABC subunit C; Provisional	89.53
TIGR00194	574	uvrC excinuclease ABC, C subunit. This family cons	89.43
COG0322	581	UvrC Nuclease subunit of the excinuclease complex	87.62
PF15469	182	Sec5: Exocyst complex component Sec5	86.73
KOG4825	666	consensus Component of synaptic membrane glycine-,	86.25
PF06476	115	DUF1090: Protein of unknown function (DUF1090); In	85.05
PF07743	78	HSCB_C: HSCB C-terminal oligomerisation domain; In	80.74

>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.5e-50  Score=332.59  Aligned_cols=123  Identities=47%  Similarity=0.842  Sum_probs=118.0

Q ss_pred             ecccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCce
Q 022883          160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSF  239 (290)
Q Consensus       160 ~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F  239 (290)
                      .+.|..|.|+|.|.|++++|+|.+++|+|+|+|+|+|+++.+|||++|||.|||+||++++|+|+||||+||+|+||++|
T Consensus         2 ~~~~~~I~V~V~~~yleeQS~P~~~RyvfaYtitI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y   81 (126)
T COG2967           2 MASSPDIEVQVQPRYLEEQSSPEEERYVFAYTVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEY   81 (126)
T ss_pred             CcccCceEEEEeeEEccccCCcccceEEEEEEEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCce
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCCC
Q 022883          240 EYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGD  285 (290)
Q Consensus       240 ~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~~  285 (290)
                      +|+|+|+|+||.|.|+|+|+|+..   +|+.|+|.||+|+|++|.-
T Consensus        82 ~YtSg~~l~Tp~G~M~GhY~M~~e---~G~~F~v~Ip~F~L~vP~~  124 (126)
T COG2967          82 QYTSGCPLDTPSGTMQGHYEMIDE---DGETFDVAIPVFRLAVPGL  124 (126)
T ss_pred             EEcCCcCccCCcceEEEEEEEecC---CCcEEEeecCceEecCccc
Confidence            999999999999999999999963   3799999999999999963

>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed

Probab=100.00  E-value=1.7e-49  Score=333.44  Aligned_cols=123  Identities=48%  Similarity=0.874  Sum_probs=118.5

Q ss_pred             eecccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCc
Q 022883          159 SDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTS  238 (290)
Q Consensus       159 s~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~  238 (290)
                      +.++|+||+|+|.|.|+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||++
T Consensus         2 ~~~~t~gI~V~V~~~y~~e~S~p~~~~y~f~Y~ItI~N~~~~~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~   81 (127)
T PRK05461          2 YSAVTYGIEVSVQPRYLEEQSDPEEGRYVFAYTITIENLGRVPVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGES   81 (127)
T ss_pred             cccccCCEEEEEEEEECcccCCCcCCEEEEEEEEEEEECCCCCEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCC
Q 022883          239 FEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMG  284 (290)
Q Consensus       239 F~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~  284 (290)
                      |+|+|+|+|+||.|+|+|+|+|+.  + .|+.|+|.||+|+|.+|.
T Consensus        82 F~Y~S~~~l~tp~G~M~G~y~~~~--~-~G~~F~v~Ip~F~L~~P~  124 (127)
T PRK05461         82 FEYTSGAVLETPSGTMQGHYQMVD--E-DGERFEVPIPPFRLAVPR  124 (127)
T ss_pred             eEEeCCCCccCCCEEEEEEEEEEe--C-CCCEEEEEccCEEcCCCc
Confidence            999999999999999999999996  3 369999999999999996

>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO)

Probab=100.00  E-value=1.2e-38  Score=253.52  Aligned_cols=88  Identities=57%  Similarity=1.070  Sum_probs=79.1

Q ss_pred             ecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceEEccccccccCceee
Q 022883          175 IEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRM  254 (290)
Q Consensus       175 ~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~Y~S~~~L~Tp~G~M  254 (290)
                      +|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||++|+|+|+|+|+||.|+|
T Consensus         1 ~~e~S~p~~~~y~f~Y~I~I~N~~~~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~S~~~l~t~~G~M   80 (90)
T PF04379_consen    1 VPEQSDPSQNRYVFAYRIRIENHSDESVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYTSGCPLSTPSGSM   80 (90)
T ss_dssp             -GGG-BGGGTBEEEEEEEEEEE-SSS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEEEEEEESSSEEEE
T ss_pred             CccccCCCCCeEEEEEEEEEEECCCCCEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEcCCCCcCCCCEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEE
Q 022883          255 EGDFEMKH  262 (290)
Q Consensus       255 ~G~y~m~~  262 (290)
                      +|+|+|++
T Consensus        81 ~G~y~~~~   88 (90)
T PF04379_consen   81 EGSYTMVD   88 (90)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999986

F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-36  Score=286.68  Aligned_cols=165  Identities=32%  Similarity=0.489  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhhh-cC----CCccCccceecccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEE
Q 022883          121 FRLRRLMKEAVAEERFEDAARYRDKLKE-IA----PNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRIT  195 (290)
Q Consensus       121 ~~L~~~L~~AI~eEryE~AA~lRDei~e-L~----P~~~~~~~s~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~  195 (290)
                      ++|+++.-.+..+..--....++|.+.+ ++    |+.....+..++|+||+|+|+|+|+|+.|.+..+.|+|+|.|||+
T Consensus       207 heLf~~~pdl~r~~~~~~~f~~q~tl~~W~e~kn~gwl~~~dVh~etTenI~Vtvstfylge~s~~~pp~YwwrY~IRie  286 (386)
T KOG4408|consen  207 HELFDQFPDLARDPAAIPPFVIQDTLTAWQESKNHGWLPIRDVHRETTENIRVTVSTFYLGERSSVHPPVYWWRYCIRIE  286 (386)
T ss_pred             hhhhhhhhhhhcCcccCCchhhhHHHHHHHhcCCCCCcChhhCChhhcCCeEEEEEEeeecccccCCCCceEEEEEEEee
Confidence            4555555444444332233344444433 11    333335677899999999999999999999999999999999999


Q ss_pred             E-CCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCC-ceEEccccccccCceeeEEEEEEEEeCCCCCeeEEE
Q 022883          196 N-NSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNT-SFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNV  273 (290)
Q Consensus       196 N-~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe-~F~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V  273 (290)
                      | .....|||..|||+|+..+|.+++|+|+||||++|+|.||+ .|+|+||++|.|+.|+|+|.|.|...+   |..|+|
T Consensus       287 n~l~e~svQLreRhWrI~slng~le~V~G~gVVGk~PiLs~g~paFqYsSc~sl~ttsGhMwGtF~fer~~---G~lfDv  363 (386)
T KOG4408|consen  287 NALPEKSVQLRERHWRIFSLNGTLETVRGRGVVGKEPILSAGRPAFQYSSCVSLQTTSGHMWGTFRFERED---GSLFDV  363 (386)
T ss_pred             cCCCCcceEEeEeeEEEEecccchhhccccceeccccccCCCCcceEEeeeeeeccCCccceeeEEEEecC---Cccccc
Confidence            9 78899999999999999999999999999999999999998 999999999999999999999998754   699999


Q ss_pred             EecceeeccCCCCCC
Q 022883          274 AIAPFSLSTMGDDSD  288 (290)
Q Consensus       274 ~Ip~F~L~~P~~~~~  288 (290)
                      +||||.|++|+++..
T Consensus       364 kip~F~~es~ef~~e  378 (386)
T KOG4408|consen  364 KIPPFSLESPEFRLE  378 (386)
T ss_pred             cCCceEeeccccccC
Confidence            999999999988753

>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]

Probab=99.03  E-value=3.3e-10  Score=99.53  Aligned_cols=67  Identities=15%  Similarity=0.345  Sum_probs=60.5

Q ss_pred             ccccChHHHHHHHHHHHHHHHhc-------------cchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHH
Q 022883           76 RSFLSRSQAYALLKQQMEVAAKT-------------EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARY  142 (290)
Q Consensus        76 ~~~~gc~~cye~Lk~qL~~aV~~-------------E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~l  142 (290)
                      ...|||+.||.+|+.+|.+.|.+             .+-+.+..+|++|.         .|++.|+.+|+.|+||+||.+
T Consensus        90 ~g~fGCaeCY~tf~~~i~pi~~rvq~g~~~H~GK~P~~~~~~i~~~~~I~---------~L~e~Lq~~i~~EefEeAA~i  160 (176)
T COG3880          90 SGLFGCAECYKTFESQISPIITRVQGGYVEHVGKVPKRIGRKINPKRKII---------ALKEALQDLIEREEFEEAAVI  160 (176)
T ss_pred             hcccchHHHHHHHHHHhhHHHHHhhCCceeecCcCcccccccccHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999988             34556777899999         999999999999999999999


Q ss_pred             HHHhhhcCC
Q 022883          143 RDKLKEIAP  151 (290)
Q Consensus       143 RDei~eL~P  151 (290)
                      ||+|+.|+.
T Consensus       161 RDqIr~Lk~  169 (176)
T COG3880         161 RDQIRALKA  169 (176)
T ss_pred             HHHHHHHHh
Confidence            999999974

>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]

Probab=98.03  E-value=5.3e-06  Score=73.27  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=40.0

Q ss_pred             CCccccChHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhcc
Q 022883           74 SARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEE  117 (290)
Q Consensus        74 ~~~~~~gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~  117 (290)
                      ..+.-+.-...+..|++.|+++|++||||+||.+||||++|+++
T Consensus       127 ~~~~~i~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k  170 (176)
T COG3880         127 RIGRKINPKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAK  170 (176)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46677788899999999999999999999999999999988854

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=97.79  E-value=3.2e-05  Score=51.80  Aligned_cols=30  Identities=37%  Similarity=0.678  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHhhh
Q 022883           85 YALLKQQMEVAAKTEDYKEAARIRDSLRSF  114 (290)
Q Consensus        85 ye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l  114 (290)
                      +..|+.+|..|++.++||+|+.|||+|..|
T Consensus         4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l   33 (36)
T PF02151_consen    4 IKELEEKMEEAVENEDFEKAARLRDQIKAL   33 (36)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            455555566666666666666666665533

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=97.72  E-value=4.2e-05  Score=51.21  Aligned_cols=30  Identities=47%  Similarity=0.654  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883          121 FRLRRLMKEAVAEERFEDAARYRDKLKEIA  150 (290)
Q Consensus       121 ~~L~~~L~~AI~eEryE~AA~lRDei~eL~  150 (290)
                      ..|...|..|+.+++||+||.|||+|..|+
T Consensus         5 ~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~   34 (36)
T PF02151_consen    5 KELEEKMEEAVENEDFEKAARLRDQIKALK   34 (36)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999874

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>PRK05298 excinuclease ABC subunit B; Provisional

Probab=94.09  E-value=0.093  Score=55.00  Aligned_cols=33  Identities=45%  Similarity=0.633  Sum_probs=30.2

Q ss_pred             CcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883          118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA  150 (290)
Q Consensus       118 d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~  150 (290)
                      +-+..|+.+|++|.++.+||+||++||+|..|+
T Consensus       613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~  645 (652)
T PRK05298        613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELK  645 (652)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            455789999999999999999999999999986

>PRK07883 hypothetical protein; Validated

Probab=93.47  E-value=0.078  Score=54.72  Aligned_cols=45  Identities=29%  Similarity=0.457  Sum_probs=35.0

Q ss_pred             HHHHHhhhhc--cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883          107 IRDSLRSFEE--EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP  151 (290)
Q Consensus       107 LRdeIk~l~~--~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P  151 (290)
                      +++-+.-|++  .+.+..|..+|++|.++.+||+||++||+|..|+-
T Consensus       393 v~~~~~fL~G~~~~~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~  439 (557)
T PRK07883        393 VARARAALTGDDDAVLAALRARIDRLAAAERFEEAARLRDRLAALLR  439 (557)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            3444444543  33457899999999999999999999999999863

>PRK00558 uvrC excinuclease ABC subunit C; Validated

Probab=93.42  E-value=0.088  Score=54.88  Aligned_cols=44  Identities=30%  Similarity=0.440  Sum_probs=34.3

Q ss_pred             HHHHhhhhc--cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883          108 RDSLRSFEE--EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP  151 (290)
Q Consensus       108 RdeIk~l~~--~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P  151 (290)
                      +.-+.-|++  .+.+..|..+|++|.++.+||+||.+||+|..|+-
T Consensus       190 ~~~~~fL~G~~~~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~  235 (598)
T PRK00558        190 DEAKLFLSGKTDEVLKELEEKMEEASENLEFERAARYRDQIQALRR  235 (598)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            333444443  34557899999999999999999999999999863

>TIGR00631 uvrb excinuclease ABC, B subunit

Probab=93.30  E-value=0.11  Score=54.64  Aligned_cols=32  Identities=41%  Similarity=0.562  Sum_probs=29.2

Q ss_pred             cHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883          119 PIFRLRRLMKEAVAEERFEDAARYRDKLKEIA  150 (290)
Q Consensus       119 ~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~  150 (290)
                      .+..|..+|++|.++.+||+||.+||+|..|+
T Consensus       624 ~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~  655 (655)
T TIGR00631       624 LIKQLEKEMKQAARNLEFEEAARLRDEILELK  655 (655)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            44689999999999999999999999999874

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

>TIGR00631 uvrb excinuclease ABC, B subunit

Probab=92.95  E-value=0.12  Score=54.46  Aligned_cols=33  Identities=30%  Similarity=0.543  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      +-++.|+.+|++|.++.+||+||++||+|++|+
T Consensus       623 ~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~  655 (655)
T TIGR00631       623 KLIKQLEKEMKQAARNLEFEEAARLRDEILELK  655 (655)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            457899999999999999999999999999664

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

>PRK14666 uvrC excinuclease ABC subunit C; Provisional

Probab=92.95  E-value=0.12  Score=54.92  Aligned_cols=34  Identities=32%  Similarity=0.406  Sum_probs=30.6

Q ss_pred             cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883          117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA  150 (290)
Q Consensus       117 ~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~  150 (290)
                      .+-+..|..+|++|.++.+||+||++||.|..|+
T Consensus       200 ~~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~  233 (694)
T PRK14666        200 GELVDALRTEMEAASEALEFERAAVLRDQIRAVE  233 (694)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            4556899999999999999999999999999976

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=92.91  E-value=0.12  Score=53.55  Aligned_cols=32  Identities=47%  Similarity=0.670  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883          120 IFRLRRLMKEAVAEERFEDAARYRDKLKEIAP  151 (290)
Q Consensus       120 v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P  151 (290)
                      +.+|..+|++|-++-+||+||+|||+|.+|+.
T Consensus       626 I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~  657 (663)
T COG0556         626 IKKLEKEMKEAAKNLEFEEAARLRDEIKELKE  657 (663)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            45888899999999999999999999998864

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=92.91  E-value=0.16  Score=52.70  Aligned_cols=37  Identities=30%  Similarity=0.490  Sum_probs=32.5

Q ss_pred             cChHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           79 LSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        79 ~gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      -.....++.|+.+|.+|.+.-+||+||+|||+|.+|+
T Consensus       620 ~e~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~  656 (663)
T COG0556         620 KELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELK  656 (663)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3445679999999999999999999999999999544

>PRK12306 uvrC excinuclease ABC subunit C; Reviewed

Probab=92.80  E-value=0.13  Score=52.83  Aligned_cols=43  Identities=26%  Similarity=0.389  Sum_probs=34.4

Q ss_pred             HHHHhhhhc--cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883          108 RDSLRSFEE--EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA  150 (290)
Q Consensus       108 RdeIk~l~~--~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~  150 (290)
                      +.-++-|++  .+.+..|..+|++|.++.+||+||.+||.|..|+
T Consensus       180 ~~~~~fL~G~~~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~  224 (519)
T PRK12306        180 KKAEEVLKGKIDELIEKLEEEMAEKAKNQQFERALVIRDEINAIE  224 (519)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            344444444  4556789999999999999999999999999986

>PRK07883 hypothetical protein; Validated

Probab=92.39  E-value=0.14  Score=52.95  Aligned_cols=34  Identities=32%  Similarity=0.516  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        82 ~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      ..-++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus       405 ~~~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~  438 (557)
T PRK07883        405 DAVLAALRARIDRLAAAERFEEAARLRDRLAALL  438 (557)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999433

>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32

Probab=92.36  E-value=0.92  Score=36.16  Aligned_cols=60  Identities=27%  Similarity=0.473  Sum_probs=40.1

Q ss_pred             cccCCcEEEEEeE-EecC---cccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEe
Q 022883          161 ATTLGIRVQVRSV-YIED---RSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTEN  220 (290)
Q Consensus       161 ~~T~GI~V~V~~~-y~~e---~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~e  220 (290)
                      ..+.+++|+|..+ +...   ...|.....+..=.++|+|.++.++.+-.-++.+.|.+|+.-.
T Consensus         7 ~~~~~~~vtV~~v~~~~~~~~~~~~~~g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~   70 (123)
T PF11611_consen    7 VSVGGIEVTVNSVEKTDGSNEYSKPKEGNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYD   70 (123)
T ss_dssp             EEETTEEEEEEEE-EEE-SS-BEES---SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--
T ss_pred             EEECCEEEEEEEEEeecCCccccccCCCCEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEc
Confidence            3468999999988 3322   2345566777889999999999999998889999999988654

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.

>TIGR00194 uvrC excinuclease ABC, C subunit

Probab=92.35  E-value=0.16  Score=52.82  Aligned_cols=43  Identities=30%  Similarity=0.399  Sum_probs=34.4

Q ss_pred             HHHHhhhhc--cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883          108 RDSLRSFEE--EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA  150 (290)
Q Consensus       108 RdeIk~l~~--~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~  150 (290)
                      ..-+.-|++  .+.+..|..+|++|.++.+||+||++||.|..|+
T Consensus       182 ~~~~~fL~g~~~~~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~  226 (574)
T TIGR00194       182 EKIELFFNGRPQEVIKELEQKMEKASENLEFEEAARIRDQIAAVR  226 (574)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            334444443  4556889999999999999999999999999986

This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.

>PRK14667 uvrC excinuclease ABC subunit C; Provisional

Probab=92.30  E-value=0.16  Score=52.76  Aligned_cols=42  Identities=21%  Similarity=0.223  Sum_probs=33.3

Q ss_pred             HHHhhhhc--cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883          109 DSLRSFEE--EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA  150 (290)
Q Consensus       109 deIk~l~~--~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~  150 (290)
                      .-+.-|++  .+-+..|..+|++|-++.+||+||++||.|..|+
T Consensus       188 ~~~~fL~G~~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~  231 (567)
T PRK14667        188 SAKAFLSGNVKEVLPELYDKIEEYSQKLMFEKAAVIRDQILALE  231 (567)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            33444443  3455789999999999999999999999999975

>PRK14669 uvrC excinuclease ABC subunit C; Provisional

Probab=92.29  E-value=0.14  Score=53.81  Aligned_cols=35  Identities=34%  Similarity=0.447  Sum_probs=30.8

Q ss_pred             cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883          117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP  151 (290)
Q Consensus       117 ~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P  151 (290)
                      .+.+..|..+|+.|.++.+||+||++||.|..|+-
T Consensus       202 ~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~  236 (624)
T PRK14669        202 SDLARSLRARMEAAALEMQFELAAKYRDLITTVEE  236 (624)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            45567899999999999999999999999999863

>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A

Probab=92.29  E-value=0.82  Score=38.94  Aligned_cols=75  Identities=19%  Similarity=0.129  Sum_probs=53.6

Q ss_pred             cccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCC-c-eeecCCC
Q 022883          161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGE-Q-PVILPNT  237 (290)
Q Consensus       161 ~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~-q-PvL~PGe  237 (290)
                      .++++|.|-....=.+.-|...+..|-=+|.|.+.|.++.++.|-.=..+-.+.+|+.-.  ..+|=.+ + =.|+||+
T Consensus        22 ~~~d~i~V~At~~~~Gs~sv~~k~~ytktF~V~vaN~s~~~idLsk~Cf~a~~~~gk~f~--ldTVd~~L~~g~lK~g~   98 (124)
T PF14263_consen   22 SAPDNIAVYATEKSQGSVSVGGKSFYTKTFDVTVANLSDKDIDLSKMCFKAYSPDGKEFK--LDTVDEELTSGTLKPGE   98 (124)
T ss_dssp             ---SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE-SSS-EE-TT-EEEEEETTS-EEE--EEEE-GGGG-SEE-TT-
T ss_pred             ccCCCeEEEEEecCCccEeecCccceEEEEEEEEecCCCCccccccchhhhccccCCEEE--ecccchhhhhccccCCC
Confidence            456889999999998888988899999999999999999999999999999999988543  3333222 2 2688887

>PRK14670 uvrC excinuclease ABC subunit C; Provisional

Probab=92.27  E-value=0.14  Score=53.33  Aligned_cols=35  Identities=23%  Similarity=0.407  Sum_probs=31.3

Q ss_pred             cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883          117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP  151 (290)
Q Consensus       117 ~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P  151 (290)
                      .+.+..|...|+.|.++.+||+||++||.|..|+-
T Consensus       176 ~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~  210 (574)
T PRK14670        176 SKLLSQIEIKMKEAIQKEDFEAAIKLKETKRSLIE  210 (574)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            45668999999999999999999999999999863

>PRK00558 uvrC excinuclease ABC subunit C; Validated

Probab=92.09  E-value=0.17  Score=52.76  Aligned_cols=34  Identities=26%  Similarity=0.506  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        82 ~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      .+-++.|+++|+.|.++.+||+||++||+|++|+
T Consensus       201 ~~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~  234 (598)
T PRK00558        201 DEVLKELEEKMEEASENLEFERAARYRDQIQALR  234 (598)
T ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999776

>PRK14672 uvrC excinuclease ABC subunit C; Provisional

Probab=92.08  E-value=0.17  Score=53.65  Aligned_cols=34  Identities=44%  Similarity=0.664  Sum_probs=30.5

Q ss_pred             cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883          117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA  150 (290)
Q Consensus       117 ~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~  150 (290)
                      .+.+..|..+|++|.++.+||+||++||.|..|+
T Consensus       204 ~~ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~  237 (691)
T PRK14672        204 DATVARLEKRMKRAVRQEAFEAAARIRDDIQAIR  237 (691)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            4455789999999999999999999999999985

>PRK14671 uvrC excinuclease ABC subunit C; Provisional

Probab=91.95  E-value=0.18  Score=52.84  Aligned_cols=34  Identities=32%  Similarity=0.476  Sum_probs=30.6

Q ss_pred             cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883          117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA  150 (290)
Q Consensus       117 ~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~  150 (290)
                      .+.+..|..+|++|.++.+||+||++||.|..|+
T Consensus       214 ~~l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~  247 (621)
T PRK14671        214 SALIRSLTEEMQRAAAELKFEEAAELKDQIESLK  247 (621)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            4556899999999999999999999999999975

>PRK14668 uvrC excinuclease ABC subunit C; Provisional

Probab=91.93  E-value=0.19  Score=52.26  Aligned_cols=34  Identities=35%  Similarity=0.454  Sum_probs=30.3

Q ss_pred             CcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883          118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP  151 (290)
Q Consensus       118 d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P  151 (290)
                      +.+..|+..|++|.++.+||+||++||.|..|+-
T Consensus       199 ~~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~  232 (577)
T PRK14668        199 VLADPLRREMEAAAQAQEFERAANLRDRLEAVEA  232 (577)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            4457899999999999999999999999999863

>PRK05298 excinuclease ABC subunit B; Provisional

Probab=91.92  E-value=0.18  Score=52.88  Aligned_cols=33  Identities=36%  Similarity=0.591  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      .-++.|+.+|+.|.+..+||+||++||+|++|+
T Consensus       613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~  645 (652)
T PRK05298        613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELK  645 (652)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999655

>PRK12306 uvrC excinuclease ABC subunit C; Reviewed

Probab=90.79  E-value=0.25  Score=50.84  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      .=++.|+.+|+.|.++.+||+||++||+|.+|+
T Consensus       192 ~~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~  224 (519)
T PRK12306        192 ELIEKLEEEMAEKAKNQQFERALVIRDEINAIE  224 (519)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999887

>PRK14666 uvrC excinuclease ABC subunit C; Provisional

Probab=90.70  E-value=0.26  Score=52.40  Aligned_cols=33  Identities=30%  Similarity=0.543  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      .=++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus       201 ~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~  233 (694)
T PRK14666        201 ELVDALRTEMEAASEALEFERAAVLRDQIRAVE  233 (694)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            568899999999999999999999999999443

>PHA02571 a-gt

Probab=90.14  E-value=1.6  Score=36.45  Aligned_cols=57  Identities=26%  Similarity=0.426  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHH----HHHHhhhhccCcHHHHHHHHHHHHhhhh---hHHHH-HHHHHhhh
Q 022883           83 QAYALLKQQMEVAAKTEDYKEAARI----RDSLRSFEEEEPIFRLRRLMKEAVAEER---FEDAA-RYRDKLKE  148 (290)
Q Consensus        83 ~cye~Lk~qL~~aV~~E~ye~AA~L----RdeIk~l~~~d~v~~L~~~L~~AI~eEr---yE~AA-~lRDei~e  148 (290)
                      ..++.+...|+..++.+--.+|+++    |.||+         +|+.+-++|+.+..   |..|. +|||.+++
T Consensus        14 ~~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIk---------RL~~HAe~al~~~Nk~~Y~YAI~KLR~i~kQ   78 (109)
T PHA02571         14 EEVEELLSELQARNEAEAEKKAAKILKKNRREIK---------RLKKHAEEALFDNNKEQYVYAIKKLRDIYKQ   78 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHcC
Confidence            3488899999999999988999988    88999         99999999999876   56665 77777765

4 hypothetical protein; Provisional

>PRK14668 uvrC excinuclease ABC subunit C; Provisional

Probab=90.05  E-value=0.3  Score=50.91  Aligned_cols=33  Identities=33%  Similarity=0.553  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      .-++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus       199 ~~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~  231 (577)
T PRK14668        199 VLADPLRREMEAAAQAQEFERAANLRDRLEAVE  231 (577)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            568899999999999999999999999999665

>PRK14671 uvrC excinuclease ABC subunit C; Provisional

Probab=90.00  E-value=0.31  Score=51.19  Aligned_cols=34  Identities=29%  Similarity=0.442  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        82 ~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      ..-++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus       214 ~~l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~  247 (621)
T PRK14671        214 SALIRSLTEEMQRAAAELKFEEAAELKDQIESLK  247 (621)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999876

>PRK14667 uvrC excinuclease ABC subunit C; Provisional

Probab=89.99  E-value=0.31  Score=50.67  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      .=++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus       199 ~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~  231 (567)
T PRK14667        199 EVLPELYDKIEEYSQKLMFEKAAVIRDQILALE  231 (567)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            458899999999999999999999999999776

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]

Probab=89.78  E-value=0.31  Score=50.88  Aligned_cols=32  Identities=38%  Similarity=0.527  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883          120 IFRLRRLMKEAVAEERFEDAARYRDKLKEIAP  151 (290)
Q Consensus       120 v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P  151 (290)
                      +..|...|++|-.+.+||.||+|||.|..|+.
T Consensus       204 ~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~  235 (581)
T COG0322         204 LQELEEKMEEASENLDFERAARLRDQIKALEK  235 (581)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence            46888889999999999999999999998764

>PRK14670 uvrC excinuclease ABC subunit C; Provisional

Probab=89.65  E-value=0.35  Score=50.43  Aligned_cols=33  Identities=21%  Similarity=0.434  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      .=++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus       177 ~~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~  209 (574)
T PRK14670        177 KLLSQIEIKMKEAIQKEDFEAAIKLKETKRSLI  209 (574)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            558899999999999999999999999999777

>PRK14669 uvrC excinuclease ABC subunit C; Provisional

Probab=89.61  E-value=0.36  Score=50.75  Aligned_cols=33  Identities=30%  Similarity=0.382  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      .=++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus       203 ~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~  235 (624)
T PRK14669        203 DLARSLRARMEAAALEMQFELAAKYRDLITTVE  235 (624)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            557899999999999999999999999999776

>PRK14672 uvrC excinuclease ABC subunit C; Provisional

Probab=89.53  E-value=0.43  Score=50.74  Aligned_cols=33  Identities=33%  Similarity=0.568  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      .-++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus       205 ~ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~  237 (691)
T PRK14672        205 ATVARLEKRMKRAVRQEAFEAAARIRDDIQAIR  237 (691)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            568899999999999999999999999999666

>TIGR00194 uvrC excinuclease ABC, C subunit

Probab=89.43  E-value=0.37  Score=50.14  Aligned_cols=33  Identities=36%  Similarity=0.560  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      .=++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus       194 ~~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~  226 (574)
T TIGR00194       194 EVIKELEQKMEKASENLEFEEAARIRDQIAAVR  226 (574)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999877

This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]

Probab=87.62  E-value=0.58  Score=48.88  Aligned_cols=33  Identities=33%  Similarity=0.599  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883           83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE  115 (290)
Q Consensus        83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~  115 (290)
                      .-+..|+++|+.|-++.+||.||++||+|.+|+
T Consensus       202 ~v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~  234 (581)
T COG0322         202 AVLQELEEKMEEASENLDFERAARLRDQIKALE  234 (581)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            558899999999999999999999999999665

>PF15469 Sec5: Exocyst complex component Sec5

Probab=86.73  E-value=2.3  Score=37.05  Aligned_cols=51  Identities=20%  Similarity=0.392  Sum_probs=45.5

Q ss_pred             cchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhc
Q 022883           99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI  149 (290)
Q Consensus        99 E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL  149 (290)
                      +.-+++.++|..+.-|+....+..|=..|+++|+.++|+.|...-..++.+
T Consensus        65 ~~~~k~~~l~~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l  115 (182)
T PF15469_consen   65 ERREKADKLRNALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSL  115 (182)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999999998666555554

>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]

Probab=86.25  E-value=0.84  Score=46.74  Aligned_cols=64  Identities=20%  Similarity=0.292  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHhhhhc-cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhh
Q 022883           85 YALLKQQMEVAAKTEDYKEAARIRDSLRSFEE-EEPIFRLRRLMKEAVAEERFEDAARYRDKLKE  148 (290)
Q Consensus        85 ye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~-~d~v~~L~~~L~~AI~eEryE~AA~lRDei~e  148 (290)
                      +-.+.+.=+.||++|+|.-|-+++-.|+.|+. .+.+.+|...=..||++|+|..|--+.|+|.+
T Consensus       173 IgaidenKqeAVakEdfdlAKkaklAiaDLkKsgeeleelEndKgcAVadEDfdlAkdkkdeiea  237 (666)
T KOG4825|consen  173 IGAIDENKQEAVAKEDFDLAKKAKLAIADLKKSGEELEELENDKGCAVADEDFDLAKDKKDEIEA  237 (666)
T ss_pred             HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHH
Confidence            55677777899999999999999999998874 44556777777789999999999988888776

>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli

Probab=85.05  E-value=3.6  Score=34.39  Aligned_cols=74  Identities=19%  Similarity=0.240  Sum_probs=62.0

Q ss_pred             CccccChHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh------------------ccCcHHHHHHHHHHHHhhhhh
Q 022883           75 ARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE------------------EEEPIFRLRRLMKEAVAEERF  136 (290)
Q Consensus        75 ~~~~~gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~------------------~~d~v~~L~~~L~~AI~eEry  136 (290)
                      ....-||......+..||+-|=+.++-...+.|...+.+++                  .+..|.+....|++|...++.
T Consensus        16 ~~~~~gC~~K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~   95 (115)
T PF06476_consen   16 AAALTGCEAKEQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS   95 (115)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            34588999999999999999999988888888877666664                  345677888899999999999


Q ss_pred             HHHHHHHHHhhh
Q 022883          137 EDAARYRDKLKE  148 (290)
Q Consensus       137 E~AA~lRDei~e  148 (290)
                      ++.++.++.|.+
T Consensus        96 ~KI~K~~~KL~e  107 (115)
T PF06476_consen   96 DKIAKRQKKLAE  107 (115)
T ss_pred             HHHHHHHHHHHH
Confidence            999988888765

>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein)

Probab=80.74  E-value=9.2  Score=28.87  Aligned_cols=59  Identities=25%  Similarity=0.356  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 022883           84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLK  147 (290)
Q Consensus        84 cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~  147 (290)
                      ..-.++++|+.+...++-.+-..|+.+|+     ..+..+...|..++...+|+.|+.+-.+++
T Consensus         9 e~mE~rE~le~~~~~~~~~~L~~l~~~~~-----~~~~~~~~~l~~~f~~~d~~~A~~~~~kLk   67 (78)
T PF07743_consen    9 EQMELREELEEAQNSDDEAELEELKKEIE-----ERIKELIKELAEAFDAKDWEEAKEALRKLK   67 (78)
T ss_dssp             HHHHHHHHHHHHCCCTSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence            45567788887776555566666666666     345588889999999999999997665554

HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	290
1tza_A	134	X-Ray Structure Of Northeast Structural Genomics Co		3e-24
1xq4_A	139	Crystal Structure Of The Putative Apaa Protein From		7e-23
2f1e_A	127	Solution Structure Of Apag Protein Length = 127		1e-20
1xvs_A	126	Crystal Structure Of Apag Protein From Vibrio Chole		9e-20

>pdb|1TZA|A Chain A, X-Ray Structure Of Northeast Structural Genomics Consortium Target Sor45 Length = 134

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVG 225
           IRV+V++ YIE +S P   +Y F+Y + I N  E+  +L  RHWIITDANGKT  + G G
Sbjct: 8   IRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAG 67
Query: 226 VIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMG 284
           V+GE P I PNT+++Y+S   L TP G   G +    V   G   FN  I PF L+T G
Sbjct: 68  VVGETPTIPPNTAYQYTSGTVLDTPFGIXYGTY--GXVSESGEH-FNAIIKPFRLATPG 123

>pdb|1XQ4|A Chain A, Crystal Structure Of The Putative Apaa Protein From Bordetella Pertussis, Northeast Structural Genomics Target Ber40 Length = 139

Iteration: 1
 Score =  104 bits (259), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVG 225
           + V V   Y+ ++S P + QY FAY VRITN    P Q++ RHWIITD   + + + G+G
Sbjct: 13  LTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLG 72
Query: 226 VIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLS 281
           V+G+QP++ P  +FEY+S CPL TP G   G +   H        F V IA F L+
Sbjct: 73  VVGQQPLLAPGETFEYTSGCPLPTPIGTXRGTY---HCVGENGIPFEVPIAEFLLA 125

>pdb|2F1E|A Chain A, Solution Structure Of Apag Protein Length = 127

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVG 225
           + V+V   ++  +S P +G+Y FAY +RI N    P +L+ RHW ITD NG+TE + G G
Sbjct: 9   VEVEVSPRFLAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEG 68
Query: 226 VIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLST 282
           V+GEQP + P  +F Y+S   L T  G+M+G ++M   D      F   IA F LS 
Sbjct: 69  VVGEQPWLRPGEAFHYTSGVLLETEQGQMQGHYDMVADD---GTEFIAPIAAFVLSV 122

>pdb|1XVS|A Chain A, Crystal Structure Of Apag Protein From Vibrio Cholerae Length = 126

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Query: 160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTE 219
           D +   I++QV++ YIE++S P   ++ FAY + I N S + VQL  R W+ITDA+GK  
Sbjct: 2   DVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLXSRRWLITDADGKQT 61
Query: 220 NILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFS 279
            + G GV+GEQP I  N  + YSS   L TP G  +G +    +D  G ++F V I PF 
Sbjct: 62  VVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGVXQGQY--LXIDEQG-ESFTVEIEPFR 118
Query: 280 LS 281
           L+
Sbjct: 119 LA 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
1tza_A	134	APAG protein, SOR45; structural genomics, PSI, pro	6e-55
1xvs_A	126	Protein APAG; MCSG APC26324, midwest center for st	2e-52
2f1e_A	127	Protein APAG; APAG protein, xanthomonas axonopodis	2e-52
1xq4_A	139	Protein APAG; all beta protein, structural genomic	3e-52
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2d7d_A	661	Uvrabc system protein B; helicase, protein-DNA-ADP	9e-06
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	1e-05
1c4o_A	664	DNA nucleotide excision repair enzyme UVRB; uvrabc	3e-04

>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1 Length = 134

 Score =  173 bits (440), Expect = 6e-55
 Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 3/121 (2%)

Query: 161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTEN 220
           A    IRV+V++ YIE +S P   +Y F+Y + I N  E+  +L  RHWIITDANGKT  
Sbjct: 3   ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSE 62

Query: 221 ILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSL 280
           + G GV+GE P I PNT+++Y+S   L TP G M G + M        + FN  I PF L
Sbjct: 63  VQGAGVVGETPTIPPNTAYQYTSGTVLDTPFGIMYGTYGMVSES---GEHFNAIIKPFRL 119

Query: 281 S 281
           +
Sbjct: 120 A 120

>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1 Length = 126

 Score =  166 bits (422), Expect = 2e-52
 Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 3/122 (2%)

Query: 160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTE 219
           D +   I++QV++ YIE++S P   ++ FAY + I N S + VQL+ R W+ITDA+GK  
Sbjct: 2   DVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQT 61

Query: 220 NILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFS 279
            + G GV+GEQP I  N  + YSS   L TP G M+G + M        ++F V I PF 
Sbjct: 62  VVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGVMQGQYLMIDEQ---GESFTVEIEPFR 118

Query: 280 LS 281
           L+
Sbjct: 119 LA 120

>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV} Length = 127

 Score =  166 bits (422), Expect = 2e-52
 Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 159 SDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKT 218
            D     + V+V   ++  +S P +G+Y FAY +RI N    P +L+ RHW ITD NG+T
Sbjct: 2   QDDPRYRVEVEVSPRFLAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRT 61

Query: 219 ENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPF 278
           E + G GV+GEQP + P  +F Y+S   L T  G+M+G ++M   D      F   IA F
Sbjct: 62  EQVDGEGVVGEQPWLRPGEAFHYTSGVLLETEQGQMQGHYDMVADD---GTEFIAPIAAF 118

Query: 279 SLS 281
            LS
Sbjct: 119 VLS 121

>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1 Length = 139

 Score =  166 bits (422), Expect = 3e-52
 Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 159 SDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKT 218
                  + V V   Y+ ++S P + QY FAY VRITN    P Q++ RHWIITD   + 
Sbjct: 6   RPVKPYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERV 65

Query: 219 ENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPF 278
           + + G+GV+G+QP++ P  +FEY+S CPL TP G M G +     +      F V IA F
Sbjct: 66  QEVRGLGVVGQQPLLAPGETFEYTSGCPLPTPIGTMRGTYHCVGEN---GIPFEVPIAEF 122

Query: 279 SLS 281
            L+
Sbjct: 123 LLA 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 6e-07
 Identities = 42/303 (13%), Positives = 83/303 (27%), Gaps = 115/303 (37%)

Query: 5   NLSSINVSTEFNATRRRRCLS---YNNSL----DLEYGRRRRVGR----GCKDL--TRTY 51
           + S+I +         RR L    Y N L    ++   +  +        CK L  TR  
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAKAWNAFNLSCKILLTTRFK 275

Query: 52  GIVACVGGGGGGSGGGGERLSSSARSFLSRSQAYALLKQQMEVAAKTEDYKE-------- 103
            +   +                     L+  +  +LL + ++   + +D           
Sbjct: 276 QVTDFLSAATTT-----HISLDHHSMTLTPDEVKSLLLKYLDC--RPQDLPREVLTTNPR 328

Query: 104 -----AARIRD----------------------SLRSFEEEEP--------IFR------ 122
                A  IRD                      SL   E  E         +F       
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 123 ---LRRLMKEAVAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLGI-------RVQVRS 172
              L  +  + +  +      +           SL++     +T+ I       +V++ +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKY-------SLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 173 VY------IE-----------DRSQPLKGQYFF---AYRVRITNNSERPVQLLRR----- 207
            Y      ++           D   P   QYF+    + ++   + ER + L R      
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-MTLFRMVFLDF 500

Query: 208 HWI 210
            ++
Sbjct: 501 RFL 503

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 37/281 (13%), Positives = 78/281 (27%), Gaps = 66/281 (23%)

Query: 2   HAFNLSSINVSTEFNATRRRRCLSYNNSL--DLEYGRRRRVGR---------GCKDLTRT 50
           + F +S I       +   R  +   + L  D +   +  V R            +L   
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 51  YGIVACVGGGGGGSGG---GGERLSSSAR-----------SFLSRSQAYALLKQQMEVAA 96
             ++     G  GSG      +   S              +  + +    +L+   ++  
Sbjct: 151 KNVLID---GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 97  K-TEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLL 155
           +   ++   +    +++          LRRL+K             Y         N LL
Sbjct: 208 QIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKS----------KPY--------ENCLL 248

Query: 156 --------KCLSDATTLGIRVQV--RSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLL 205
                   K   +A  L  ++ +  R   + D        +       +T   +    LL
Sbjct: 249 VLLNVQNAKAW-NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 206 RRHWIITDANG-----KTENILGVGVIGEQPVILPNTSFEY 241
            + ++            T N   + +I E       T ++ 
Sbjct: 308 LK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDN 346

>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Length = 661

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 17/63 (26%), Positives = 29/63 (46%)

Query: 87  LLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146
           +++  +    K E   +AA     +   E ++ + ++   MKEA     FE AA  RD L
Sbjct: 595 VIRATVAAEDKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLL 654

Query: 147 KEI 149
            E+
Sbjct: 655 LEL 657

>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Length = 664

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 101 YKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149
             E A +   L   +  E I  L   M +A     FE AAR RD+++ +
Sbjct: 594 GYEEAPLEADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRAL 642

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
2f1e_A	127	Protein APAG; APAG protein, xanthomonas axonopodis	100.0
1xvs_A	126	Protein APAG; MCSG APC26324, midwest center for st	100.0
1tza_A	134	APAG protein, SOR45; structural genomics, PSI, pro	100.0
1xq4_A	139	Protein APAG; all beta protein, structural genomic	100.0
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	97.42
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	97.38
2d7d_A	661	Uvrabc system protein B; helicase, protein-DNA-ADP	95.23
2d7d_A	661	Uvrabc system protein B; helicase, protein-DNA-ADP	95.12
3nrf_A	106	APAG protein; structural genomics, joint center fo	93.74
1c4o_A	664	DNA nucleotide excision repair enzyme UVRB; uvrabc	93.54
1c4o_A	664	DNA nucleotide excision repair enzyme UVRB; uvrabc	93.48
3cfu_A	159	Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR56	81.1

>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}

Probab=100.00  E-value=2.1e-51  Score=343.65  Aligned_cols=123  Identities=39%  Similarity=0.697  Sum_probs=113.4

Q ss_pred             eecccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCc
Q 022883          159 SDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTS  238 (290)
Q Consensus       159 s~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~  238 (290)
                      ++++|+||+|+|+|.|+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||++
T Consensus         2 ~~~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe~   81 (127)
T 2f1e_A            2 QDDPRYRVEVEVSPRFLAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEGVVGEQPWLRPGEA   81 (127)
T ss_dssp             ----CCCEEEEEEEEECSTTCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEESSBTTBCCEECTTCE
T ss_pred             ccceECCEEEEEEEEEchhhCCCcCCEEEEEEEEEEEeCCCCCEEEEeceEEEEeCCCCEEEEECCCeecCCCcCCCCCc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCC
Q 022883          239 FEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMG  284 (290)
Q Consensus       239 F~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~  284 (290)
                      |+|+|+|+|+||.|+|+|+|+|+..  + |+.|+|.||+|+|++|.
T Consensus        82 f~YtSg~~L~tp~G~M~G~y~m~~~--~-G~~F~v~Ip~F~L~~P~  124 (127)
T 2f1e_A           82 FHYTSGVLLETEQGQMQGHYDMVAD--D-GTEFIAPIAAFVLSVPR  124 (127)
T ss_dssp             EEEEEEEEESSSCEEEEEEEEEEET--T-CCEEEEEEEEEEEC---
T ss_pred             eEEeCCcCcCCCcEEEEEEEEEEEC--C-CCEEEEECCceEcCCCc
Confidence            9999999999999999999999863  3 68999999999999996

>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1

Probab=100.00  E-value=3.7e-51  Score=341.81  Aligned_cols=123  Identities=41%  Similarity=0.704  Sum_probs=118.2

Q ss_pred             ecccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCce
Q 022883          160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSF  239 (290)
Q Consensus       160 ~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F  239 (290)
                      +++|+||+|+|.|.|+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||++|
T Consensus         2 ~~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe~f   81 (126)
T 1xvs_A            2 DVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEY   81 (126)
T ss_dssp             BCSCCCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTTCEE
T ss_pred             CcccCCEEEEEEEEEchhcCCCcCCEEEEEEEEEEEECCCCCEEEEecEEEEEeCCCCEEEEECCceEcCCCcCCCCCce
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCCC
Q 022883          240 EYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGD  285 (290)
Q Consensus       240 ~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~~  285 (290)
                      +|+|+|+|+||.|+|+|+|+|+.  ++ |+.|+|.||+|+|++|.-
T Consensus        82 ~YtSg~~L~tp~G~M~G~y~m~~--~~-G~~F~v~Ip~F~L~~P~~  124 (126)
T 1xvs_A           82 TYSSGTALDTPVGVMQGQYLMID--EQ-GESFTVEIEPFRLAVPHV  124 (126)
T ss_dssp             EEEEEEEESSSEEEEEEEEEEEC--TT-SCEEEEEEEEEEEECCCC
T ss_pred             EEeCCcCcCCCcEEEEEEEEEEE--CC-CCEEEEECCceEcCCccc
Confidence            99999999999999999999985  33 699999999999999973

>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1

Probab=100.00  E-value=8.3e-51  Score=342.84  Aligned_cols=123  Identities=46%  Similarity=0.756  Sum_probs=118.7

Q ss_pred             cccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceE
Q 022883          161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFE  240 (290)
Q Consensus       161 ~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~  240 (290)
                      ++|+||+|+|+|.|+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||++|+
T Consensus         3 ~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~ItI~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVGeqP~L~PGe~F~   82 (134)
T 1tza_A            3 ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAYQ   82 (134)
T ss_dssp             CGGGTEEEEEEEEEEEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTEEEE
T ss_pred             CccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEEcCceEcCCCcCCCCCceE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCCCC
Q 022883          241 YSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGDD  286 (290)
Q Consensus       241 Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~~~  286 (290)
                      |+|+|+|.||.|+|+|+|+|+..  + |+.|+|.||+|+|++|..+
T Consensus        83 YtSg~~L~Tp~G~M~G~y~m~~~--~-G~~F~v~Ip~F~L~~P~~~  125 (134)
T 1tza_A           83 YTSGTVLDTPFGIMYGTYGMVSE--S-GEHFNAIIKPFRLATPGLL  125 (134)
T ss_dssp             EEEEEEESSSEEEEEEEEEEEET--T-CCEEEEEEEEEEEECTTSS
T ss_pred             EcCCcCcCCCceEEEEEEEEEEC--C-CCEEEEECCCeEccCCChh
Confidence            99999999999999999999863  3 6899999999999999875

>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1

Probab=100.00  E-value=2.5e-50  Score=341.69  Aligned_cols=123  Identities=40%  Similarity=0.773  Sum_probs=118.5

Q ss_pred             ecccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCce
Q 022883          160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSF  239 (290)
Q Consensus       160 ~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F  239 (290)
                      ..+|+||+|+|.|.|+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||++|
T Consensus         7 ~~tT~gI~V~V~~~y~~e~S~p~~~~y~FaY~ItI~N~~~~~vQL~sRhW~ItD~~G~~~eV~G~GVVGeqPvL~PGe~F   86 (139)
T 1xq4_A            7 PVKPYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGETF   86 (139)
T ss_dssp             CCCSSCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEECTTSCEEEEEEESSSSCCCEECTTCEE
T ss_pred             ccccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEECCCeecCCCcCCCCCce
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCCC
Q 022883          240 EYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGD  285 (290)
Q Consensus       240 ~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~~  285 (290)
                      +|+|+|+|+||.|+|+|+|+|+..  + |+.|+|.||+|+|++|..
T Consensus        87 ~YtSg~~L~Tp~G~M~G~y~m~~~--~-G~~F~v~Ip~F~L~~P~~  129 (139)
T 1xq4_A           87 EYTSGCPLPTPIGTMRGTYHCVGE--N-GIPFEVPIAEFLLAMPRT  129 (139)
T ss_dssp             EEEEEEEESSSEEEEEEEEEEEET--T-SCEEEEEEEEEEEECTTC
T ss_pred             EEcCCcCcCCCceEEEEEEEEEeC--C-CCEEEEECCCeEcCCCCh
Confidence            999999999999999999999863  3 699999999999999975

>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*

Probab=95.23  E-value=0.013  Score=59.49  Aligned_cols=33  Identities=36%  Similarity=0.415  Sum_probs=26.0

Q ss_pred             cHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883          119 PIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP  151 (290)
Q Consensus       119 ~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P  151 (290)
                      .+.+|..+|++|.++++||+||+|||+|++|+.
T Consensus       627 ~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~  659 (661)
T 2d7d_A          627 VVEQMEHEMKEAAKALDFERAAELRDLLLELKA  659 (661)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Confidence            346899999999999999999999999999963

>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*

Probab=95.12  E-value=0.013  Score=59.37  Aligned_cols=34  Identities=29%  Similarity=0.463  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhc
Q 022883           83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE  116 (290)
Q Consensus        83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~  116 (290)
                      +-++.|+.+|++|.+..+||+||+|||+|++|+.
T Consensus       626 ~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~  659 (661)
T 2d7d_A          626 KVVEQMEHEMKEAAKALDFERAAELRDLLLELKA  659 (661)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Confidence            4588999999999999999999999999997764

>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A

Probab=93.74  E-value=0.28  Score=39.52  Aligned_cols=77  Identities=18%  Similarity=0.110  Sum_probs=61.9

Q ss_pred             cccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCC
Q 022883          161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNT  237 (290)
Q Consensus       161 ~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe  237 (290)
                      +++++|.|-....=.+.-|...+..|-=+|.|.|.|.++.++.|-.=..+-.+.+|+.-..++-.-.=..=.|.||+
T Consensus         2 ~~~d~v~V~At~k~~GS~s~~~k~~ytktFdV~vaNl~~~~idLsk~C~~a~~~~gkef~ldTVde~L~~g~lk~g~   78 (106)
T 3nrf_A            2 AAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGA   78 (106)
T ss_dssp             ---CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEECCSSSCEECTTCEEEEEETTSCEEEEEEECGGGGCSEECTTC
T ss_pred             CCcCcEEEEeeccccccEEeCCeeEEEEEEEEEEecCCCCccccchhhheeeCcCCCEEEecccchhhhhccccCCC
Confidence            46899999999999999998888899999999999999999999999999999999876555522111244788886

>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*

Probab=93.54  E-value=0.013  Score=59.46  Aligned_cols=34  Identities=35%  Similarity=0.459  Sum_probs=0.0

Q ss_pred             CcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883          118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP  151 (290)
Q Consensus       118 d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P  151 (290)
                      ..+.+|..+|++|.++++||+||+|||+|++|+.
T Consensus       611 ~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~  644 (664)
T 1c4o_A          611 ERIAELELAMWQAAEALDFERAARLRDEIRALEA  644 (664)
T ss_dssp             ----------------------------------
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            3456899999999999999999999999999975

>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*

Probab=93.48  E-value=0.014  Score=59.34  Aligned_cols=35  Identities=37%  Similarity=0.506  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhc
Q 022883           82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE  116 (290)
Q Consensus        82 ~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~  116 (290)
                      .+.++.|+.+|++|++..+||+||+|||+|++|+.
T Consensus       610 ~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~  644 (664)
T 1c4o_A          610 RERIAELELAMWQAAEALDFERAARLRDEIRALEA  644 (664)
T ss_dssp             -----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999996654

>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}

Probab=81.10  E-value=8.7  Score=32.22  Aligned_cols=104  Identities=12%  Similarity=0.110  Sum_probs=63.9

Q ss_pred             ccCCcEEEEEeEEecC---c--------ccC---CCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCccc
Q 022883          162 TTLGIRVQVRSVYIED---R--------SQP---LKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVI  227 (290)
Q Consensus       162 ~T~GI~V~V~~~y~~e---~--------S~p---~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVV  227 (290)
                      ...+++|+|..+-...   .        ..|   .++.-+..-.|+|+|.++.++..-.=.|.+.|++|+.-.... ...
T Consensus         9 ~~~~~evTVnsv~~~~~~e~~~~~~~~~~~p~~~~~G~~fviV~VTIeN~g~e~~~~s~~~F~L~d~dG~~~~~~~-~~~   87 (159)
T 3cfu_A            9 KAGHTNFTVNKVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTMENIGEDSISYNFIGFDLRDKNDQSVRPVF-SIE   87 (159)
T ss_dssp             EETTEEEEEEEEEEECSSCBEESSCC------CBCCCSEEEEEEEEEEECSSSCEEEEGGGEEEECTTCCBCCCEE-CST
T ss_pred             EECCEEEEEEEEEEcCCCceeecccccccCccccCCCCEEEEEEEEEEECCCCceeeCcccEEEEeCCCCEEecee-eec
Confidence            4467999987765432   1        334   566567899999999999999887778999999998543221 111


Q ss_pred             CCceeecCCCceEEccccccccCceeeEEEEEEEEeCCCCC-eeEEEEecce
Q 022883          228 GEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGS-QTFNVAIAPF  278 (290)
Q Consensus       228 G~qPvL~PGe~F~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg-~~F~V~Ip~F  278 (290)
                      +.      +..|.+.   .|. |...|+|...|....  +. ..+.+..-|.
T Consensus        88 ~~------~~~l~~g---~L~-pG~kvtG~ivFeVP~--~~~k~~~L~y~p~  127 (159)
T 3cfu_A           88 EK------GRILMGG---TLV-SGKKVTGVLSYVIPK--GEQKHYTLVYNPF  127 (159)
T ss_dssp             TT------TTBCCEE---EEC-TTCEEEEEEEEEEST--TCGGGCEEEECHH
T ss_pred             cc------CCccccc---ccC-CCCEEEEEEEEEECC--CCCccEEEEEecC
Confidence            11      1122211   222 667899999987522  22 2455555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	290
d1tzaa_	132	b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId:	5e-55
d1xvsa_	124	b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}	3e-54
d1xq4a_	123	b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 5	1e-52
d1e52a_	56	a.2.9.1 (A:) C-terminal UvrC-binding domain of Uvr	8e-06
d1e52a_	56	a.2.9.1 (A:) C-terminal UvrC-binding domain of Uvr	3e-05

>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]} Length = 132

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Shewanella oneidensis [TaxId: 70863]

 Score =  172 bits (438), Expect = 5e-55
 Identities = 55/122 (45%), Positives = 73/122 (59%), Gaps = 3/122 (2%)

Query: 161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTEN 220
           A    IRV+V++ YIE +S P   +Y F+Y + I N  E+  +L  RHWIITDANGKT  
Sbjct: 1   ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSE 60

Query: 221 ILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSL 280
           + G GV+GE P I PNT+++Y+S   L TP G M G + M        + FN  I PF L
Sbjct: 61  VQGAGVVGETPTIPPNTAYQYTSGTVLDTPFGIMYGTYGMVSES---GEHFNAIIKPFRL 117

Query: 281 ST 282
           +T
Sbjct: 118 AT 119

>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Vibrio cholerae [TaxId: 666]

 Score =  170 bits (432), Expect = 3e-54
 Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 3/122 (2%)

Query: 160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTE 219
           D +   I++QV++ YIE++S P   ++ FAY + I N S + VQL+ R W+ITDA+GK  
Sbjct: 2   DVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQT 61

Query: 220 NILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFS 279
            + G GV+GEQP I  N  + YSS   L TP G M+G + M        ++F V I PF 
Sbjct: 62  VVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGVMQGQYLMIDEQ---GESFTVEIEPFR 118

Query: 280 LS 281
           L+
Sbjct: 119 LA 120

>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Bordetella pertussis [TaxId: 520]

 Score =  166 bits (421), Expect = 1e-52
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 3/116 (2%)

Query: 166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVG 225
           + V V   Y+ ++S P + QY FAY VRITN    P Q++ RHWIITD   + + + G+G
Sbjct: 7   LTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLG 66

Query: 226 VIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLS 281
           V+G+QP++ P  +FEY+S CPL TP G M G +     +      F V IA F L+
Sbjct: 67  VVGQQPLLAPGETFEYTSGCPLPTPIGTMRGTYHCVGEN---GIPFEVPIAEFLLA 119

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]} Length = 56

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (94), Expect = 8e-06
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 103 EAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149
           E   +   +     ++ I  L  LM +      FE+AA+ RD+L ++
Sbjct: 2   EPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 48

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]} Length = 56

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 88  LKQQMEVAAKTEDYKEAARIRDSLRSFEEE 117
           L+  M   A+  +++EAA+IRD L    E 
Sbjct: 22  LEGLMMQHAQNLEFEEAAQIRDQLHQLREL 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d1tzaa_	132	ApaG {Shewanella oneidensis [TaxId: 70863]}	100.0
d1xvsa_	124	ApaG {Vibrio cholerae [TaxId: 666]}	100.0
d1xq4a_	123	ApaG {Bordetella pertussis [TaxId: 520]}	100.0
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	97.53
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	97.35
d1fpoa2	95	HSC20 (HSCB), C-terminal oligomerisation domain {E	85.53

>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Shewanella oneidensis [TaxId: 70863]

Probab=100.00  E-value=1.5e-49  Score=332.36  Aligned_cols=122  Identities=46%  Similarity=0.779  Sum_probs=117.8

Q ss_pred             cccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceE
Q 022883          161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFE  240 (290)
Q Consensus       161 ~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~  240 (290)
                      |+|+||+|+|.|.|+|++|+|.+.+|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||++|+
T Consensus         1 a~t~gI~V~V~t~y~~e~S~p~~~~y~F~Y~ItI~N~~~~~vQLlsR~W~I~d~~G~~~eV~G~GVVG~qPvl~PGe~f~   80 (132)
T d1tzaa_           1 ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAYQ   80 (132)
T ss_dssp             CGGGTEEEEEEEEEEEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTEEEE
T ss_pred             CccCCEEEEEEEEEchhcCCCCCCeEEEEEEEEEEeCCCCCEEEEeeEEEEECCCCCEEEEeCCCccCCcCccCCCCCEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCCC
Q 022883          241 YSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGD  285 (290)
Q Consensus       241 Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~~  285 (290)
                      |+|+|+|+||.|+|+|+|+|++  ++ |+.|+|.||+|.|.+|.-
T Consensus        81 Y~S~~~l~t~~G~M~G~y~m~~--~~-g~~F~v~Ip~F~L~~P~~  122 (132)
T d1tzaa_          81 YTSGTVLDTPFGIMYGTYGMVS--ES-GEHFNAIIKPFRLATPGL  122 (132)
T ss_dssp             EEEEEEESSSEEEEEEEEEEEE--TT-CCEEEEEEEEEEEECTTS
T ss_pred             EeCCCCccCCceEEEEEEEEEE--CC-CCEEEEECCCEECCCCch
Confidence            9999999999999999999997  33 689999999999999974

>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Vibrio cholerae [TaxId: 666]

Probab=100.00  E-value=6.1e-49  Score=325.62  Aligned_cols=122  Identities=42%  Similarity=0.719  Sum_probs=117.6

Q ss_pred             ecccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCce
Q 022883          160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSF  239 (290)
Q Consensus       160 ~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F  239 (290)
                      +++|.||+|+|.|.|+|++|+|.+.+|+|+|+|+|+|.++.+|||++|||+|+|++|+.++|+|+||||+||+|.||+.|
T Consensus         2 d~~~~~I~V~V~~~y~~e~S~p~~~~y~f~Y~I~I~N~~~~~vQLlsR~W~I~d~~g~~~~V~G~GVVG~qPvl~PGe~f   81 (124)
T d1xvsa_           2 DVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEY   81 (124)
T ss_dssp             BCSCCCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTTCEE
T ss_pred             CcccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEeeEEEEEeCCCCEEEeccCcccCCCCCcCCCCCE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCC
Q 022883          240 EYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMG  284 (290)
Q Consensus       240 ~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~  284 (290)
                      +|+|+|+|+||.|.|+|+|+|+.  + .|+.|+|.||+|.|.+|+
T Consensus        82 ~Y~S~~~l~tp~G~M~G~y~m~~--~-~g~~F~v~Ip~F~L~~P~  123 (124)
T d1xvsa_          82 TYSSGTALDTPVGVMQGQYLMID--E-QGESFTVEIEPFRLAVPH  123 (124)
T ss_dssp             EEEEEEEESSSEEEEEEEEEEEC--T-TSCEEEEEEEEEEEECCC
T ss_pred             EEeCCCCccCCCeEEEEEEEEEc--C-CCCEEEEECCCEEccCCC
Confidence            99999999999999999999985  3 369999999999999996

>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Bordetella pertussis [TaxId: 520]

Probab=100.00  E-value=6.6e-48  Score=319.01  Aligned_cols=120  Identities=41%  Similarity=0.807  Sum_probs=115.9

Q ss_pred             ccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceEE
Q 022883          162 TTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEY  241 (290)
Q Consensus       162 ~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~Y  241 (290)
                      .++.|+|+|.|.|+|++|+|.+++|+|+|+|+|+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||++|+|
T Consensus         3 ~~~~I~V~V~~~y~~e~S~~~~~~y~F~Y~I~I~N~~~~~vQL~sR~W~I~d~~g~~~eV~G~GVVG~qPvl~PGe~f~Y   82 (123)
T d1xq4a_           3 KPYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGETFEY   82 (123)
T ss_dssp             CSSCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEECTTSCEEEEEEESSSSCCCEECTTCEEEE
T ss_pred             CCCcEEEEEEEEEchhcCCCCCCeEEEEEEEEEEECCCCcEEEEeeeEEEEeCCCCEEEccCCCEeCCcccCCCCCCEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCC
Q 022883          242 SSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMG  284 (290)
Q Consensus       242 ~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~  284 (290)
                      +|+|+|+||.|+|+|+|+|+.  + +|+.|+|.||+|.|.+|+
T Consensus        83 ~S~~~l~tp~G~M~G~y~m~~--~-~g~~f~v~Ip~F~L~~P~  122 (123)
T d1xq4a_          83 TSGCPLPTPIGTMRGTYHCVG--E-NGIPFEVPIAEFLLAMPR  122 (123)
T ss_dssp             EEEEEESSSEEEEEEEEEEEE--T-TSCEEEEEEEEEEEECTT
T ss_pred             eCCCCcCCCCeEEEEEEEEEE--C-CCCEEEEECCCeEcCCCC
Confidence            999999999999999999996  3 369999999999999996

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=5.5e-05  Score=53.02  Aligned_cols=31  Identities=35%  Similarity=0.426  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Q 022883           82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLR  112 (290)
Q Consensus        82 ~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk  112 (290)
                      .+.++.|+.+|..|.++.+||+||++||+|.
T Consensus        16 ~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~   46 (56)
T d1e52a_          16 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLH   46 (56)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            4678888889999999999999999999988

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=5.1e-05  Score=53.20  Aligned_cols=29  Identities=34%  Similarity=0.556  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883          122 RLRRLMKEAVAEERFEDAARYRDKLKEIA  150 (290)
Q Consensus       122 ~L~~~L~~AI~eEryE~AA~lRDei~eL~  150 (290)
                      .|...|++|.++.+||+||++||+|..|+
T Consensus        21 ~Le~~M~~aa~~l~FE~AA~~RD~I~~l~   49 (56)
T d1e52a_          21 ELEGLMMQHAQNLEFEEAAQIRDQLHQLR   49 (56)
T ss_dssp             HHHHHHHHHHHTTCHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999985

>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: HSC20 (HSCB), C-terminal oligomerisation domain
family: HSC20 (HSCB), C-terminal oligomerisation domain
domain: HSC20 (HSCB), C-terminal oligomerisation domain
species: Escherichia coli [TaxId: 562]

Probab=85.53  E-value=1.5  Score=31.98  Aligned_cols=59  Identities=17%  Similarity=0.214  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 022883           83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL  146 (290)
Q Consensus        83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei  146 (290)
                      .+...++++|+.+-..++.+.-..+..+|+     ..+..+...|+.++...+|+.|+..-.++
T Consensus        17 MeqME~RE~lee~~~~~d~~~l~~l~~ei~-----~~~~~~~~~l~~~~~~~d~~~A~~~~~kL   75 (95)
T d1fpoa2          17 MEQLELREELDEIEQAKDEARLESFIKRVK-----KMFDTRHQLMVEQLDNETWDAAADTCRKL   75 (95)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhccHHHHHHHHHHh
Confidence            356788999999988888777677777766     34457888999999999999998554443