Citrus Sinensis ID: 022892
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | 2.2.26 [Sep-21-2011] | |||||||
| O50044 | 290 | 2-dehydro-3-deoxyphosphoo | N/A | no | 1.0 | 1.0 | 0.903 | 1e-152 | |
| Q9AV97 | 290 | 2-dehydro-3-deoxyphosphoo | yes | no | 1.0 | 1.0 | 0.896 | 1e-151 | |
| Q6NQL4 | 291 | 2-dehydro-3-deoxyphosphoo | no | no | 0.996 | 0.993 | 0.871 | 1e-147 | |
| B5EPM6 | 281 | 2-dehydro-3-deoxyphosphoo | yes | no | 0.893 | 0.921 | 0.522 | 2e-76 | |
| B7J6R3 | 281 | 2-dehydro-3-deoxyphosphoo | yes | no | 0.893 | 0.921 | 0.522 | 2e-76 | |
| B8GQ74 | 280 | 2-dehydro-3-deoxyphosphoo | yes | no | 0.893 | 0.925 | 0.526 | 3e-75 | |
| Q1H010 | 279 | 2-dehydro-3-deoxyphosphoo | yes | no | 0.886 | 0.921 | 0.530 | 9e-75 | |
| Q8RE91 | 278 | 2-dehydro-3-deoxyphosphoo | yes | no | 0.882 | 0.920 | 0.521 | 2e-74 | |
| Q604M5 | 283 | 2-dehydro-3-deoxyphosphoo | yes | no | 0.886 | 0.908 | 0.511 | 3e-74 | |
| A1VLH2 | 285 | 2-dehydro-3-deoxyphosphoo | yes | no | 0.886 | 0.901 | 0.503 | 4e-73 |
| >sp|O50044|KDSA_PEA 2-dehydro-3-deoxyphosphooctonate aldolase OS=Pisum sativum GN=KDSA PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 536 bits (1380), Expect = e-152, Method: Compositional matrix adjust.
Identities = 262/290 (90%), Positives = 280/290 (96%)
Query: 1 MDPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKAN 60
MDPS L+NQLKAA+PFFLLAGPNVIESEEHIMRMAKHIK+IS+K G+PL+FKSSFDKAN
Sbjct: 1 MDPSVLLYNQLKAADPFFLLAGPNVIESEEHIMRMAKHIKTISSKFGIPLIFKSSFDKAN 60
Query: 61 RTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQT 120
RTSSKSFRGPG+VEGLKILEKVKIAYDIPIVTDVHE QCE VG+VADIIQIPAFLCRQT
Sbjct: 61 RTSSKSFRGPGIVEGLKILEKVKIAYDIPIVTDVHEASQCEPVGRVADIIQIPAFLCRQT 120
Query: 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
DLLVAAAKTGKIINIKKGQFCA SVM NSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR
Sbjct: 121 DLLVAAAKTGKIINIKKGQFCAPSVMANSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
Query: 181 NLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240
NLEWMREANCPVVAD+THSLQQPAGKKLDGGGVASGGLRELIPCIART++AVGVDG+FME
Sbjct: 181 NLEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTSVAVGVDGIFME 240
Query: 241 VHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290
VHDDPLNAPVDGPTQWPLR+LEELLEEL+AI++VSKGK+ NIDLTPFR+
Sbjct: 241 VHDDPLNAPVDGPTQWPLRHLEELLEELIAISRVSKGKKPFNIDLTPFRE 290
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Pisum sativum (taxid: 3888) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 5 |
| >sp|Q9AV97|KDSA1_ARATH 2-dehydro-3-deoxyphosphooctonate aldolase 1 OS=Arabidopsis thaliana GN=KDSA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 535 bits (1378), Expect = e-151, Method: Compositional matrix adjust.
Identities = 260/290 (89%), Positives = 279/290 (96%)
Query: 1 MDPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKAN 60
M ++ L+NQLKAAEPFFLLAGPNVIESEEHI+RMAKHIK ISTKVGLPLVFKSSFDKAN
Sbjct: 1 MAATSLLYNQLKAAEPFFLLAGPNVIESEEHILRMAKHIKDISTKVGLPLVFKSSFDKAN 60
Query: 61 RTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQT 120
RTSSKSFRGPGM EGLKILEKVK+AYD+PIVTDVHE+ QCE VGKVADIIQIPAFLCRQT
Sbjct: 61 RTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKVADIIQIPAFLCRQT 120
Query: 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
DLLVAAA+TGKIINIKKGQFCA SVM NSAEK+RLAGNPNVMVCERGTMFGYNDLIVDPR
Sbjct: 121 DLLVAAAQTGKIINIKKGQFCAPSVMENSAEKIRLAGNPNVMVCERGTMFGYNDLIVDPR 180
Query: 181 NLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240
N EWMREANCPVVAD+THSLQQPAGKKLDGGGVASGGLRELIPCIARTA+AVGVDG+FME
Sbjct: 181 NFEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFME 240
Query: 241 VHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290
VHDDPL+APVDGPTQWPLR+LEELLEEL+AIA+V+KGKQR+ IDLTP+RD
Sbjct: 241 VHDDPLSAPVDGPTQWPLRHLEELLEELIAIARVTKGKQRLQIDLTPYRD 290
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 5 |
| >sp|Q6NQL4|KDSA2_ARATH 2-dehydro-3-deoxyphosphooctonate aldolase 2 OS=Arabidopsis thaliana GN=KDSA2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 519 bits (1337), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/289 (87%), Positives = 275/289 (95%)
Query: 2 DPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANR 61
+ ++ L++QLK AEPFFLLAGPNVIESEEH++RMAK IK ISTK+GLPLVFKSSFDKANR
Sbjct: 3 NSASLLYDQLKVAEPFFLLAGPNVIESEEHVLRMAKSIKDISTKLGLPLVFKSSFDKANR 62
Query: 62 TSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTD 121
TSSKSFRGPGM EGLKILEKVK+A+D+PIVTDVHE+ QCE VGKVADIIQIPAFLCRQTD
Sbjct: 63 TSSKSFRGPGMAEGLKILEKVKVAFDLPIVTDVHESSQCEAVGKVADIIQIPAFLCRQTD 122
Query: 122 LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRN 181
LLVAAA++GKIINIKKGQFC SVM NSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRN
Sbjct: 123 LLVAAAQSGKIINIKKGQFCGHSVMRNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRN 182
Query: 182 LEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241
LEWMREA+CPVVAD+THSLQQPAGKKLDGGGVASGGLRELIPCIARTA+AVGVDG+FMEV
Sbjct: 183 LEWMREADCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEV 242
Query: 242 HDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290
HDDPLNAPVDGPTQWPLR+LEELLEEL+AIA V+KGKQ+ IDLTP+RD
Sbjct: 243 HDDPLNAPVDGPTQWPLRHLEELLEELIAIASVTKGKQQFQIDLTPYRD 291
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Catalyzes the stereospecific condensation of D-arabinose 5-phosphate and phosphoenolpyruvate to form 3-deoxy-D-manno-octulosonate 8-phosphate (KDO-8-phosphate) and inorganic phosphate. Involved in the biosynthesis of 3-deoxy-D-manno-octulosonate (KDO) which is an indispensable component of rhamnogalacturonan II (RG-II), a structurally complex pectic polysaccharide of the primary cell wall. RG-II is essential for the cell wall integrity of rapidly growing tissues and pollen tube growth and elongation. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 5 |
| >sp|B5EPM6|KDSA_ACIF5 2-dehydro-3-deoxyphosphooctonate aldolase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=kdsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (730), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/264 (52%), Positives = 178/264 (67%), Gaps = 5/264 (1%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
PFFL+AGP IESE +R A+ ++ I ++G+P ++KSS+DKANR+S +SFRGPGM E
Sbjct: 12 HPFFLMAGPCAIESESLALRTAEDLRDICARLGIPFIYKSSYDKANRSSGQSFRGPGMDE 71
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GL+ILEKV+ +P+VTDVHE V +V D++Q PAFLCRQTD + A A GK +N
Sbjct: 72 GLRILEKVRREVGVPVVTDVHEKEDVSAVAEVVDVLQTPAFLCRQTDFIQAVAAAGKPVN 131
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 194
IKKGQF A M++ A K + GN +MVCERG FGYN+L+ D R+L MR+ CPVV
Sbjct: 132 IKKGQFLAPWDMLHVASKAKATGNEQIMVCERGASFGYNNLVSDMRSLAVMRQTGCPVVF 191
Query: 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254
D THS+Q P G+ G SGG RE IP +AR A+A GV G+FME H +P +A DGP
Sbjct: 192 DATHSVQLPGGQ-----GDRSGGQREFIPVLARAAVAAGVSGLFMETHPNPADALSDGPN 246
Query: 255 QWPLRNLEELLEELVAIAKVSKGK 278
WPL +E+LL L I V K +
Sbjct: 247 AWPLGRMEDLLRILQHIDHVVKNQ 270
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Acidithiobacillus ferrooxidans (strain ATCC 53993) (taxid: 380394) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 5 |
| >sp|B7J6R3|KDSA_ACIF2 2-dehydro-3-deoxyphosphooctonate aldolase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=kdsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (730), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/264 (52%), Positives = 178/264 (67%), Gaps = 5/264 (1%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
PFFL+AGP IESE +R A+ ++ I ++G+P ++KSS+DKANR+S +SFRGPGM E
Sbjct: 12 HPFFLMAGPCAIESESLALRTAEDLRDICARLGIPFIYKSSYDKANRSSGQSFRGPGMDE 71
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GL+ILEKV+ +P+VTDVHE V +V D++Q PAFLCRQTD + A A GK +N
Sbjct: 72 GLRILEKVRREVGVPVVTDVHEKEDVSAVAEVVDVLQTPAFLCRQTDFIQAVAAAGKPVN 131
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 194
IKKGQF A M++ A K + GN +MVCERG FGYN+L+ D R+L MR+ CPVV
Sbjct: 132 IKKGQFLAPWDMLHVASKAKATGNEQIMVCERGASFGYNNLVSDMRSLAVMRQTGCPVVF 191
Query: 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254
D THS+Q P G+ G SGG RE IP +AR A+A GV G+FME H +P +A DGP
Sbjct: 192 DATHSVQLPGGQ-----GDRSGGQREFIPVLARAAVAAGVSGLFMETHPNPADALSDGPN 246
Query: 255 QWPLRNLEELLEELVAIAKVSKGK 278
WPL +E+LL L I V K +
Sbjct: 247 AWPLGRMEDLLRILQHIDHVVKNQ 270
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Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) (taxid: 243159) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 5 |
| >sp|B8GQ74|KDSA_THISH 2-dehydro-3-deoxyphosphooctonate aldolase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=kdsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (720), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 139/264 (52%), Positives = 176/264 (66%), Gaps = 5/264 (1%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
P FL++GP VIESE+ + A +K + +VG+P ++KSSFDKANR+S++SFRG G+ E
Sbjct: 12 HPIFLISGPCVIESEQLALDTAGQLKELCERVGVPFIYKSSFDKANRSSTRSFRGLGLEE 71
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GL+ILE VK +P++TDVHE EEV V D++Q PAFLCRQT+ + A+ G+ +N
Sbjct: 72 GLRILETVKQQIGVPVLTDVHEDTPLEEVAAVVDVLQTPAFLCRQTNFIQNVARQGRPVN 131
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 194
IKKGQF A M N +K R AGN +MVCERG FGYN L+ D R L MRE CPVV
Sbjct: 132 IKKGQFLAPWDMGNVVDKAREAGNDQIMVCERGVSFGYNTLVSDMRGLAVMRETGCPVVF 191
Query: 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254
D THS+QQP GK G +SGG RE +P +AR A+A GV G+FME H DP A DGP
Sbjct: 192 DATHSVQQPGGK-----GTSSGGQREFVPVLARAAVASGVAGLFMETHPDPDKALSDGPN 246
Query: 255 QWPLRNLEELLEELVAIAKVSKGK 278
WPL +EELL L + V K +
Sbjct: 247 AWPLPLMEELLVTLKTLDDVVKAQ 270
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Thioalkalivibrio sp. (strain HL-EbGR7) (taxid: 396588) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 5 |
| >sp|Q1H010|KDSA_METFK 2-dehydro-3-deoxyphosphooctonate aldolase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=kdsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (716), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 140/264 (53%), Positives = 177/264 (67%), Gaps = 7/264 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
+P FL+AGP VIES+E + A +K I+T +G+ ++KSS+DKANR+S+K+FRG GM E
Sbjct: 12 QPLFLIAGPCVIESQEMAIETAGQLKEITTALGINFIYKSSYDKANRSSNKTFRGFGMDE 71
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GLKIL++V+ +PI+TDVH Q V V D++Q PAFLCRQTD + A A++GK +N
Sbjct: 72 GLKILDEVRRQVGVPILTDVHTEAQVPHVAAVVDVLQTPAFLCRQTDFITACAQSGKPVN 131
Query: 135 IKKGQFCASSVMVNSAEKVRLA--GNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPV 192
IKKGQF A M +K + A G +MVCERG FGYN LI D R L MRE NCPV
Sbjct: 132 IKKGQFLAPGDMKQVVQKAKEANGGADTIMVCERGASFGYNTLISDMRGLAIMRETNCPV 191
Query: 193 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDG 252
V D THS+QQP G+ G SGG RE +P +AR A+A GV GVFME H DP A DG
Sbjct: 192 VFDATHSVQQPGGQ-----GDKSGGQREFVPVLARAAVASGVAGVFMETHPDPAQALSDG 246
Query: 253 PTQWPLRNLEELLEELVAIAKVSK 276
P WPL ++ LLE LV + +V K
Sbjct: 247 PNAWPLSKMKALLEVLVDLDRVVK 270
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Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) (taxid: 265072) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 5 |
| >sp|Q8RE91|KDSA_FUSNN 2-dehydro-3-deoxyphosphooctonate aldolase OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=kdsA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 136/261 (52%), Positives = 188/261 (72%), Gaps = 5/261 (1%)
Query: 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGL 76
F L+AGP V+ES+E + +A IK I ++G+ +FK+SFDKANR+S S+RGPG+ EG+
Sbjct: 22 FVLIAGPCVMESQELMDEVAGGIKEICDRLGIEYIFKASFDKANRSSIYSYRGPGLEEGM 81
Query: 77 KILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIK 136
K+L K+K +++P++TDVHE QC+EV KVADI+QIPAFLCRQTDLL+AAA+TGK +NIK
Sbjct: 82 KMLTKIKEKFNVPVITDVHEAWQCKEVAKVADILQIPAFLCRQTDLLIAAAETGKAVNIK 141
Query: 137 KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADV 196
KGQF A M N K+ + N N+M+CERG+ FGYN+++VD R+L MR+ N PV+ DV
Sbjct: 142 KGQFLAPWDMKNIVVKMEESRNKNIMLCERGSTFGYNNMVVDMRSLLEMRKFNYPVIFDV 201
Query: 197 THSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQW 256
THS+Q+P G G A+ G RE + + R +A+GVD +F EVH +P A DGP
Sbjct: 202 THSVQKPGGL-----GTATSGDREYVYPLLRAGLAIGVDAIFAEVHPNPAEAKSDGPNML 256
Query: 257 PLRNLEELLEELVAIAKVSKG 277
L++LEE+L+ + I K+ KG
Sbjct: 257 YLKDLEEILKIAIEIDKIVKG 277
|
Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) (taxid: 190304) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 5 |
| >sp|Q604M5|KDSA_METCA 2-dehydro-3-deoxyphosphooctonate aldolase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=kdsA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 134/262 (51%), Positives = 175/262 (66%), Gaps = 5/262 (1%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
P FL+AGP VIE+E+ + A +K I+ +G+P ++KSSFDKANR+S S+RGPGM E
Sbjct: 22 HPLFLIAGPCVIETEQLALDTAGALKEITDGLGIPFIYKSSFDKANRSSHASYRGPGMEE 81
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GL+IL +VK +P++TDVHE +EV V D++Q PAFLCRQT+ + A TGK +N
Sbjct: 82 GLRILAEVKRQIGVPVLTDVHEDTPLQEVASVVDVLQTPAFLCRQTNFIQNVANTGKPVN 141
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 194
+KKGQF A M + A K GN ++MVCERG FGYN+L+ D R+L MRE CPVV
Sbjct: 142 LKKGQFLAPWDMKHVAAKALATGNRHIMVCERGVSFGYNNLVSDMRSLSIMRETGCPVVY 201
Query: 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254
D THS+Q P G+ G ASGG RE +P +AR A+AVG+ G+FME H DP A DGP
Sbjct: 202 DATHSVQLPGGQ-----GTASGGQREFVPALARAAVAVGISGLFMETHPDPDRALSDGPN 256
Query: 255 QWPLRNLEELLEELVAIAKVSK 276
WPL ++ LLE L + + K
Sbjct: 257 SWPLDRMKALLELLSTLDRTVK 278
|
Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 5 |
| >sp|A1VLH2|KDSA_POLNA 2-dehydro-3-deoxyphosphooctonate aldolase OS=Polaromonas naphthalenivorans (strain CJ2) GN=kdsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (702), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/268 (50%), Positives = 178/268 (66%), Gaps = 11/268 (4%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
+PFFL+AGP V+ESE+ M A +K I+ +G+P +FKSS+DKANR+S SFRGPGM +
Sbjct: 12 QPFFLIAGPCVVESEQLQMDTAGTLKEITASLGIPFIFKSSYDKANRSSGTSFRGPGMEK 71
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GL+IL KVK +PI+TDVH + V V D++Q PAFLCRQTD + A A++G+ +N
Sbjct: 72 GLQILAKVKRELGLPILTDVHSEAEITAVAAVVDVLQTPAFLCRQTDFIHAVAQSGRPVN 131
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPN------VMVCERGTMFGYNDLIVDPRNLEWMREA 188
IKKGQF A M N +K R A M CERG FGYN+L+ D R+L MRE
Sbjct: 132 IKKGQFLAPGDMKNVIDKARAAAREKGLDEDRFMACERGASFGYNNLVSDMRSLAIMRET 191
Query: 189 NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA 248
PVV D THS+Q P G G +SGG RE++P +AR A+AVG+ G+FME H DP NA
Sbjct: 192 RAPVVFDATHSVQLPGGM-----GTSSGGQREMVPVLARAAVAVGIAGLFMETHPDPANA 246
Query: 249 PVDGPTQWPLRNLEELLEELVAIAKVSK 276
DGP PL++++ LLE L+ + +V+K
Sbjct: 247 MSDGPNAVPLKHMKALLETLLELDRVTK 274
|
Polaromonas naphthalenivorans (strain CJ2) (taxid: 365044) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | ||||||
| 388510750 | 290 | unknown [Lotus japonicus] | 1.0 | 1.0 | 0.913 | 1e-155 | |
| 363808254 | 291 | uncharacterized protein LOC100810842 [Gl | 1.0 | 0.996 | 0.893 | 1e-154 | |
| 356568567 | 293 | PREDICTED: 2-dehydro-3-deoxyphosphoocton | 1.0 | 0.989 | 0.894 | 1e-153 | |
| 449464932 | 289 | PREDICTED: 2-dehydro-3-deoxyphosphoocton | 0.989 | 0.993 | 0.895 | 1e-152 | |
| 224062802 | 290 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.924 | 1e-152 | |
| 224085268 | 290 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.920 | 1e-151 | |
| 6647535 | 290 | RecName: Full=2-dehydro-3-deoxyphosphooc | 1.0 | 1.0 | 0.903 | 1e-150 | |
| 21360537 | 290 | AT5g09730/F17I14_80 [Arabidopsis thalian | 1.0 | 1.0 | 0.896 | 1e-150 | |
| 15219400 | 290 | 2-dehydro-3-deoxyphosphooctonate aldolas | 1.0 | 1.0 | 0.896 | 1e-149 | |
| 297839815 | 290 | predicted protein [Arabidopsis lyrata su | 1.0 | 1.0 | 0.893 | 1e-149 |
| >gi|388510750|gb|AFK43441.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 265/290 (91%), Positives = 280/290 (96%)
Query: 1 MDPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKAN 60
MDPS L++QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSI+TKVG+ LVFKSSFDKAN
Sbjct: 1 MDPSALLYSQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSIATKVGILLVFKSSFDKAN 60
Query: 61 RTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQT 120
RTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE QCE VG+VADIIQIPAFLCRQT
Sbjct: 61 RTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHEASQCEAVGRVADIIQIPAFLCRQT 120
Query: 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
DLLVAAAKTGKIINIKKGQFCA SVM NSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR
Sbjct: 121 DLLVAAAKTGKIINIKKGQFCAPSVMENSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
Query: 181 NLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240
NLEWMREANCPVVAD+THSLQQPAGKKLDGGGVASGGLRELIPCIARTA+AVGVDG+FME
Sbjct: 181 NLEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFME 240
Query: 241 VHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290
VHDDPL+APVD PTQWPLR+LE+LLEELVAI++VSKGKQ+ NIDLTPFR+
Sbjct: 241 VHDDPLSAPVDVPTQWPLRHLEQLLEELVAISRVSKGKQQFNIDLTPFRE 290
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363808254|ref|NP_001242237.1| uncharacterized protein LOC100810842 [Glycine max] gi|255640137|gb|ACU20359.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust.
Identities = 260/291 (89%), Positives = 281/291 (96%), Gaps = 1/291 (0%)
Query: 1 MDPSTAL-FNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKA 59
MDPS AL FN LK A+PFFLLAGPNVIESEEH++RMAK+IK+I+++VG+PLVFKSSFDKA
Sbjct: 1 MDPSAALLFNHLKGADPFFLLAGPNVIESEEHVLRMAKNIKTIASEVGIPLVFKSSFDKA 60
Query: 60 NRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQ 119
NRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE++QCE VG+VADIIQIPAFLCRQ
Sbjct: 61 NRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHESIQCEAVGRVADIIQIPAFLCRQ 120
Query: 120 TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP 179
TDLLVAAAKTGKIINIKKGQFCA SVM NSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP
Sbjct: 121 TDLLVAAAKTGKIINIKKGQFCAPSVMTNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP 180
Query: 180 RNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239
RNLEWMREANCP+VAD+THSLQQPAGKKLDGGGVASGGLRELIPCIARTA+AVGVDG+FM
Sbjct: 181 RNLEWMREANCPIVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFM 240
Query: 240 EVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290
EVHDDPL APVDGPTQWPLR+ +ELLEELVAIA++SKGKQR NIDLTPFR+
Sbjct: 241 EVHDDPLKAPVDGPTQWPLRHFKELLEELVAIARISKGKQRFNIDLTPFRE 291
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568567|ref|XP_003552482.1| PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust.
Identities = 262/293 (89%), Positives = 280/293 (95%), Gaps = 3/293 (1%)
Query: 1 MDPSTAL-FNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTK--VGLPLVFKSSFD 57
MDPS AL FN LK A+PFFLLAGPNVIESEEHI+RMAK+IKS++++ VG+PLVFKSSFD
Sbjct: 1 MDPSAALLFNHLKGADPFFLLAGPNVIESEEHILRMAKNIKSVASEYVVGIPLVFKSSFD 60
Query: 58 KANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLC 117
KANRTSSKSFRGPGM EGLKILEKVKIAYDIPIVTDVHET+QCE VG+VADIIQIPAFLC
Sbjct: 61 KANRTSSKSFRGPGMAEGLKILEKVKIAYDIPIVTDVHETIQCEAVGRVADIIQIPAFLC 120
Query: 118 RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 177
RQTDLLVAAAKTGKIINIKKGQFCA SVM NSAEKVRLAGNPNVMVCERGTMFGYNDLIV
Sbjct: 121 RQTDLLVAAAKTGKIINIKKGQFCAPSVMTNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 180
Query: 178 DPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237
DPRNLEWMREANCP+VAD+THSLQQPAGK LDGGGVASGGLRELIPCIARTA+AVGVDG+
Sbjct: 181 DPRNLEWMREANCPIVADITHSLQQPAGKMLDGGGVASGGLRELIPCIARTAVAVGVDGI 240
Query: 238 FMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290
FMEVHDDPLNAPVDGPTQWPLR+ +ELLEELVAIA+VSKGKQR NIDLTPFR+
Sbjct: 241 FMEVHDDPLNAPVDGPTQWPLRHFKELLEELVAIARVSKGKQRFNIDLTPFRE 293
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464932|ref|XP_004150183.1| PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Cucumis sativus] gi|449529772|ref|XP_004171872.1| PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 257/287 (89%), Positives = 275/287 (95%)
Query: 4 STALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTS 63
S+ LFNQL+AAEPFFLLAGPNVIESEEHI RMAKHIK+IS+K GLPLVFKSSFDKANRTS
Sbjct: 3 SSLLFNQLRAAEPFFLLAGPNVIESEEHIFRMAKHIKNISSKFGLPLVFKSSFDKANRTS 62
Query: 64 SKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLL 123
+KSFRGPGMVEGLKILEKVK+AYDIPIVTDVHE++QCE VGKVADIIQIPAFLCRQTDLL
Sbjct: 63 AKSFRGPGMVEGLKILEKVKLAYDIPIVTDVHESIQCEAVGKVADIIQIPAFLCRQTDLL 122
Query: 124 VAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLE 183
VAAAKTG+IINIKKGQFCA SVM NSAEK+R+AGN NVMVCERGTMFGYNDLIVDPRNLE
Sbjct: 123 VAAAKTGRIINIKKGQFCAPSVMTNSAEKIRMAGNSNVMVCERGTMFGYNDLIVDPRNLE 182
Query: 184 WMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243
WMRE NCPVVAD+THSLQQPAG++L GGVASGGLRELIPCIARTA+AVGVDG+FMEVHD
Sbjct: 183 WMRETNCPVVADITHSLQQPAGRQLGDGGVASGGLRELIPCIARTAVAVGVDGIFMEVHD 242
Query: 244 DPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290
DPLNAPVDGPTQWPLR+LE LLEELVAIA+VSKGKQR NIDLTPFRD
Sbjct: 243 DPLNAPVDGPTQWPLRHLEALLEELVAIARVSKGKQRFNIDLTPFRD 289
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224062802|ref|XP_002300891.1| predicted protein [Populus trichocarpa] gi|118484126|gb|ABK93946.1| unknown [Populus trichocarpa] gi|222842617|gb|EEE80164.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/290 (92%), Positives = 281/290 (96%)
Query: 1 MDPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKAN 60
MD ST LFNQLKAAEPFFLLAGPNVIESEEHI+RMA H+K+IST+VGLPLVFKSSFDKAN
Sbjct: 1 MDSSTVLFNQLKAAEPFFLLAGPNVIESEEHILRMANHLKTISTRVGLPLVFKSSFDKAN 60
Query: 61 RTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQT 120
RTSSKSFRGPGM EGLKILEKVKIAYDIPIVTDVHET+QCE VG+VADIIQIPAFLCRQT
Sbjct: 61 RTSSKSFRGPGMSEGLKILEKVKIAYDIPIVTDVHETIQCEPVGQVADIIQIPAFLCRQT 120
Query: 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
DLLVAAAKTGKIINIKKGQFCA SVM NSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR
Sbjct: 121 DLLVAAAKTGKIINIKKGQFCAPSVMSNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
Query: 181 NLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240
NLEW+REA CPVVAD+THSLQQPAGKKLDGGGVASGGLRELIPCIARTA+AVGVDG+FME
Sbjct: 181 NLEWIREAKCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFME 240
Query: 241 VHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290
VHDDPLNAPVDGPTQWPLR+LEELLEELVAIAKVSKGK++M IDLTPFRD
Sbjct: 241 VHDDPLNAPVDGPTQWPLRHLEELLEELVAIAKVSKGKKQMAIDLTPFRD 290
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224085268|ref|XP_002307529.1| predicted protein [Populus trichocarpa] gi|222856978|gb|EEE94525.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 267/290 (92%), Positives = 281/290 (96%)
Query: 1 MDPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKAN 60
MD STALF+QLK AEPFFLLAGPNVIESEEHI+RMA H+K+ISTKVGLPLVFKSSFDKAN
Sbjct: 1 MDSSTALFDQLKVAEPFFLLAGPNVIESEEHILRMANHLKTISTKVGLPLVFKSSFDKAN 60
Query: 61 RTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQT 120
RTSSKSFRGPGM EGLKILEKVKIAYDIPIVTDVHET+QCE VGKVADIIQIPAFLCRQT
Sbjct: 61 RTSSKSFRGPGMSEGLKILEKVKIAYDIPIVTDVHETIQCEPVGKVADIIQIPAFLCRQT 120
Query: 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
DLLVAAAKTGKIINIKKGQFCA SVM NSAEKVRLAGNPNVMVCERGTMFGY+DLIVDPR
Sbjct: 121 DLLVAAAKTGKIINIKKGQFCAPSVMSNSAEKVRLAGNPNVMVCERGTMFGYSDLIVDPR 180
Query: 181 NLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240
NLEW+REANCPVVAD+THSLQQPAG+KLDGGGVASGGLRELIPCIARTA+AVGVDG+FME
Sbjct: 181 NLEWIREANCPVVADITHSLQQPAGRKLDGGGVASGGLRELIPCIARTAVAVGVDGIFME 240
Query: 241 VHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290
VHDDPLNAPVDGPTQWPLR+LEELLEELVAIAKVSKGK+ MNIDLTPF +
Sbjct: 241 VHDDPLNAPVDGPTQWPLRHLEELLEELVAIAKVSKGKKPMNIDLTPFHE 290
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6647535|sp|O50044.1|KDSA_PEA RecName: Full=2-dehydro-3-deoxyphosphooctonate aldolase; AltName: Full=3-deoxy-D-manno-octulosonic acid 8-phosphate synthase; AltName: Full=KDO-8-phosphate synthase; Short=KDO 8-P synthase; Short=KDOPS; AltName: Full=Phospho-2-dehydro-3-deoxyoctonate aldolase gi|2695861|emb|CAA74644.1| 3-deoxy-D-manno-2-octulosonate-8-phosphate synthase [Pisum sativum] gi|2695863|emb|CAA74645.1| 3-deoxy-D-manno-2-octulosonate-8-phosphate synthase [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust.
Identities = 262/290 (90%), Positives = 280/290 (96%)
Query: 1 MDPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKAN 60
MDPS L+NQLKAA+PFFLLAGPNVIESEEHIMRMAKHIK+IS+K G+PL+FKSSFDKAN
Sbjct: 1 MDPSVLLYNQLKAADPFFLLAGPNVIESEEHIMRMAKHIKTISSKFGIPLIFKSSFDKAN 60
Query: 61 RTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQT 120
RTSSKSFRGPG+VEGLKILEKVKIAYDIPIVTDVHE QCE VG+VADIIQIPAFLCRQT
Sbjct: 61 RTSSKSFRGPGIVEGLKILEKVKIAYDIPIVTDVHEASQCEPVGRVADIIQIPAFLCRQT 120
Query: 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
DLLVAAAKTGKIINIKKGQFCA SVM NSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR
Sbjct: 121 DLLVAAAKTGKIINIKKGQFCAPSVMANSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
Query: 181 NLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240
NLEWMREANCPVVAD+THSLQQPAGKKLDGGGVASGGLRELIPCIART++AVGVDG+FME
Sbjct: 181 NLEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTSVAVGVDGIFME 240
Query: 241 VHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290
VHDDPLNAPVDGPTQWPLR+LEELLEEL+AI++VSKGK+ NIDLTPFR+
Sbjct: 241 VHDDPLNAPVDGPTQWPLRHLEELLEELIAISRVSKGKKPFNIDLTPFRE 290
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21360537|gb|AAM47465.1| AT5g09730/F17I14_80 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust.
Identities = 260/290 (89%), Positives = 279/290 (96%)
Query: 1 MDPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKAN 60
M ++ L+NQLKAAEPFFLLAGPNVIESEEHI+RMAKHIK ISTKVGLPLVFKSSFDKAN
Sbjct: 1 MTATSLLYNQLKAAEPFFLLAGPNVIESEEHILRMAKHIKDISTKVGLPLVFKSSFDKAN 60
Query: 61 RTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQT 120
RTSSKSFRGPGM EGLKILEKVK+AYD+PIVTDVHE+ QCE VGKVADIIQIPAFLCRQT
Sbjct: 61 RTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKVADIIQIPAFLCRQT 120
Query: 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
DLLVAAA+TGKIINIKKGQFCA SVM NSAEK+RLAGNPNVMVCERGTMFGYNDLIVDPR
Sbjct: 121 DLLVAAAQTGKIINIKKGQFCAPSVMENSAEKIRLAGNPNVMVCERGTMFGYNDLIVDPR 180
Query: 181 NLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240
N EWMREANCPVVAD+THSLQQPAGKKLDGGGVASGGLRELIPCIARTA+AVGVDG+FME
Sbjct: 181 NFEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFME 240
Query: 241 VHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290
VHDDPL+APVDGPTQWPLR+LEELLEEL+AIA+V+KGKQR+ IDLTP+RD
Sbjct: 241 VHDDPLSAPVDGPTQWPLRHLEELLEELIAIARVTKGKQRLQIDLTPYRD 290
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15219400|ref|NP_178068.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Arabidopsis thaliana] gi|30699423|ref|NP_849906.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Arabidopsis thaliana] gi|42572171|ref|NP_974176.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Arabidopsis thaliana] gi|79321478|ref|NP_001031300.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Arabidopsis thaliana] gi|20532134|sp|Q9AV97.2|KDSA_ARATH RecName: Full=2-dehydro-3-deoxyphosphooctonate aldolase; AltName: Full=3-deoxy-D-manno-octulosonic acid 8-phosphate synthase; AltName: Full=KDO-8-phosphate synthase; Short=AtkdsA; Short=KDO 8-P synthase; Short=KDOPS; AltName: Full=Phospho-2-dehydro-3-deoxyoctonate aldolase gi|4835760|gb|AAD30227.1|AC007202_9 Strong similarity to gb|Y14272 3-deoxy-D-manno-2-octulosonate-8-phosphate synthase from Pisum sativum. ESTs gb|AA067485 and gb|AI100551 come from this gene [Arabidopsis thaliana] gi|13937187|gb|AAK50087.1|AF372947_1 At1g79500/T8K14_8 [Arabidopsis thaliana] gi|222423484|dbj|BAH19712.1| AT1G79500 [Arabidopsis thaliana] gi|332198130|gb|AEE36251.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Arabidopsis thaliana] gi|332198131|gb|AEE36252.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Arabidopsis thaliana] gi|332198132|gb|AEE36253.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Arabidopsis thaliana] gi|332198133|gb|AEE36254.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 260/290 (89%), Positives = 279/290 (96%)
Query: 1 MDPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKAN 60
M ++ L+NQLKAAEPFFLLAGPNVIESEEHI+RMAKHIK ISTKVGLPLVFKSSFDKAN
Sbjct: 1 MAATSLLYNQLKAAEPFFLLAGPNVIESEEHILRMAKHIKDISTKVGLPLVFKSSFDKAN 60
Query: 61 RTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQT 120
RTSSKSFRGPGM EGLKILEKVK+AYD+PIVTDVHE+ QCE VGKVADIIQIPAFLCRQT
Sbjct: 61 RTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKVADIIQIPAFLCRQT 120
Query: 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
DLLVAAA+TGKIINIKKGQFCA SVM NSAEK+RLAGNPNVMVCERGTMFGYNDLIVDPR
Sbjct: 121 DLLVAAAQTGKIINIKKGQFCAPSVMENSAEKIRLAGNPNVMVCERGTMFGYNDLIVDPR 180
Query: 181 NLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240
N EWMREANCPVVAD+THSLQQPAGKKLDGGGVASGGLRELIPCIARTA+AVGVDG+FME
Sbjct: 181 NFEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFME 240
Query: 241 VHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290
VHDDPL+APVDGPTQWPLR+LEELLEEL+AIA+V+KGKQR+ IDLTP+RD
Sbjct: 241 VHDDPLSAPVDGPTQWPLRHLEELLEELIAIARVTKGKQRLQIDLTPYRD 290
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839815|ref|XP_002887789.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297333630|gb|EFH64048.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/290 (89%), Positives = 278/290 (95%)
Query: 1 MDPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKAN 60
M ++ L+NQLKAAEPFFLLAGPNVIESEEHI+RMAKHIK ISTKVGLPL+FKSSFDKAN
Sbjct: 1 MAATSPLYNQLKAAEPFFLLAGPNVIESEEHILRMAKHIKDISTKVGLPLIFKSSFDKAN 60
Query: 61 RTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQT 120
RTSSKSFRGPGM EGLKILEKVK+AYD+PIVTDVHE+ QCE VGKVADIIQIPAFLCRQT
Sbjct: 61 RTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKVADIIQIPAFLCRQT 120
Query: 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
DLLVAAA TGKIINIKKGQFCA SVM NSAEK+RLAGNPNVMVCERGTMFGYNDLIVDPR
Sbjct: 121 DLLVAAAHTGKIINIKKGQFCAPSVMENSAEKIRLAGNPNVMVCERGTMFGYNDLIVDPR 180
Query: 181 NLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240
N EWMREANCPVVAD+THSLQQPAGKKLDGGGVASGGLRELIPCIARTA+AVGVDG+FME
Sbjct: 181 NFEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFME 240
Query: 241 VHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290
VHDDPL+APVDGPTQWPLR+LEELLEEL+AIA+V+KGKQR+ IDLTP+RD
Sbjct: 241 VHDDPLSAPVDGPTQWPLRHLEELLEELIAIARVTKGKQRLQIDLTPYRD 290
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | ||||||
| TAIR|locus:2206375 | 336 | AtkdsA1 [Arabidopsis thaliana | 0.820 | 0.708 | 0.890 | 4.1e-113 | |
| TIGR_CMR|CBU_1675 | 280 | CBU_1675 "2-dehydro-3-deoxypho | 0.820 | 0.85 | 0.522 | 4.2e-63 | |
| TIGR_CMR|SO_3827 | 282 | SO_3827 "2-dehydro-3-deoxyphos | 0.824 | 0.847 | 0.5 | 5.5e-61 | |
| TIGR_CMR|GSU_1894 | 272 | GSU_1894 "2-dehydro-3-deoxypho | 0.803 | 0.856 | 0.508 | 3.9e-60 | |
| TIGR_CMR|CPS_3547 | 280 | CPS_3547 "3-deoxy-8-phosphooct | 0.886 | 0.917 | 0.456 | 2.2e-59 | |
| TIGR_CMR|SPO_0947 | 277 | SPO_0947 "3-deoxy-8-phosphooct | 0.803 | 0.841 | 0.487 | 2.8e-57 | |
| UNIPROTKB|P0A715 | 284 | kdsA "3-deoxy-D-manno-octuloso | 0.903 | 0.922 | 0.446 | 4.6e-57 | |
| UNIPROTKB|Q9KQ29 | 283 | kdsA "2-dehydro-3-deoxyphospho | 0.824 | 0.844 | 0.459 | 7.8e-55 | |
| TIGR_CMR|VC_2175 | 283 | VC_2175 "2-dehydro-3-deoxyphos | 0.824 | 0.844 | 0.459 | 7.8e-55 | |
| TIGR_CMR|CJE_0433 | 271 | CJE_0433 "3-deoxy-8-phosphooct | 0.789 | 0.845 | 0.508 | 1.5e-53 |
| TAIR|locus:2206375 AtkdsA1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 4.1e-113, P = 4.1e-113
Identities = 212/238 (89%), Positives = 223/238 (93%)
Query: 35 MAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV 94
MAKHIK ISTKVGLPLVFKSSFDKANRTSSKSFRGPGM EGLKILEKVK+AYD+PIVTDV
Sbjct: 1 MAKHIKDISTKVGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDV 60
Query: 95 HETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 154
HE+ QCE VGKVADIIQIPAFLCRQTDLLVAAA+TGKIINIKKGQFCA SVM NSAEK+R
Sbjct: 61 HESSQCEAVGKVADIIQIPAFLCRQTDLLVAAAQTGKIINIKKGQFCAPSVMENSAEKIR 120
Query: 155 LAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVA 214
LAGNPNVMVCERGTMFGYNDLIVDPRN EWMREANCPVVAD+THSLQQPAGKKLDGGGVA
Sbjct: 121 LAGNPNVMVCERGTMFGYNDLIVDPRNFEWMREANCPVVADITHSLQQPAGKKLDGGGVA 180
Query: 215 SGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNXXXXXXXXVAIA 272
SGGLRELIPCIARTA+AVGVDG+FMEVHDDPL+APVDGPTQWPLR+ +AIA
Sbjct: 181 SGGLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEELLEELIAIA 238
|
|
| TIGR_CMR|CBU_1675 CBU_1675 "2-dehydro-3-deoxyphosphooctonate aldolase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 127/243 (52%), Positives = 161/243 (66%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
P FL+AGP VIESE +M +A +KSI+ ++ +P +FK+SFDKANR+S S+RGPG+ +G
Sbjct: 15 PLFLIAGPCVIESEALVMDVAGELKSITQQLDMPFIFKASFDKANRSSHLSYRGPGIEKG 74
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
L ILEKVK ++PI+TDVHE +EV V D++Q PAFLCRQ++ + + A GK +NI
Sbjct: 75 LTILEKVKKTLEVPIITDVHEDTPLQEVAAVVDVLQTPAFLCRQSNFIRSVAACGKPVNI 134
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVAD 195
KKGQF A M K GN +MVCERG FGYN+LI D R L +RE CPV+ D
Sbjct: 135 KKGQFLAPWEMKQVVAKAWATGNKKIMVCERGYSFGYNNLISDMRALAILRETACPVIFD 194
Query: 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQ 255
THS+Q P G G SGG RE +P +AR A A G+ G+FME H DP A DGP
Sbjct: 195 ATHSVQLPGGH-----GTNSGGQREFVPVLARAATAAGIAGIFMETHPDPDRALSDGPNS 249
Query: 256 WPL 258
WPL
Sbjct: 250 WPL 252
|
|
| TIGR_CMR|SO_3827 SO_3827 "2-dehydro-3-deoxyphosphooctonate aldolase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 122/244 (50%), Positives = 170/244 (69%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
+PF L G NV+ES + M +A+ ++ K+G+P VFK+SFDKANR+S S+RGPGM E
Sbjct: 17 KPFVLFGGMNVLESRDLAMSIAETYAEVTQKLGIPYVFKASFDKANRSSVNSYRGPGMEE 76
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GLKI E++K +++P++TDVHET QC V +V DIIQ+PAFL RQTDL+VA AKTG IIN
Sbjct: 77 GLKIFEEIKKTFNLPLITDVHETYQCAPVAEVVDIIQLPAFLARQTDLVVAMAKTGAIIN 136
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 194
+KK QF A M + K AGN +++CERG+ FGYN+L+VD ++ M+++ PV+
Sbjct: 137 VKKPQFLAPHEMRHIITKFNEAGNDEIILCERGSCFGYNNLVVDMLGMDEMKQSGYPVIF 196
Query: 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254
D TH+LQ+P G+ D ++GG R +AR+ +A+G+ G+F+E H DP NA DGP
Sbjct: 197 DATHALQRPGGRA-D----SAGGRRAQATELARSGMALGLAGLFIEAHPDPDNAKCDGPC 251
Query: 255 QWPL 258
PL
Sbjct: 252 ALPL 255
|
|
| TIGR_CMR|GSU_1894 GSU_1894 "2-dehydro-3-deoxyphosphooctonate aldolase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 121/238 (50%), Positives = 163/238 (68%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
P L+AGP VIE+E +R A+ + +I V + LVFK+S+DKANRTS SFRGPGM EG
Sbjct: 17 PLVLIAGPCVIENEAATLRCAERLMTICNGVSVSLVFKASYDKANRTSVTSFRGPGMQEG 76
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
L+IL+KVK + IP+++D+H Q + +V DIIQ+PAFLCRQTDL+V +T +++N+
Sbjct: 77 LRILQKVKDSLGIPVISDIHSIEQVKPAAEVLDIIQVPAFLCRQTDLVVEVGRTNRVVNV 136
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVAD 195
KKGQF A M N K+ GN +++ ERG FGYN+L+ D R+L MR PVV D
Sbjct: 137 KKGQFMAPWDMENVVGKILSTGNERIILTERGVTFGYNNLVSDMRSLPIMRRIGFPVVFD 196
Query: 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
THS+Q P G+ GG +SGG RE + ++R A+A G+DG+FMEVH+DP A DGP
Sbjct: 197 ATHSVQLPGGQ----GG-SSGGQREFVEYLSRAAVATGIDGIFMEVHEDPEKALCDGP 249
|
|
| TIGR_CMR|CPS_3547 CPS_3547 "3-deoxy-8-phosphooctulonate synthase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 120/263 (45%), Positives = 175/263 (66%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
+PF L G NV+ES + M++A+H ++ K+G+P VFK+SFDKANR+S S+RGPG+ E
Sbjct: 17 QPFVLFGGMNVLESRDLAMKIAEHYVEVTQKLGIPYVFKASFDKANRSSVNSYRGPGLDE 76
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GLKI E++K +++PI+TDVHE+ Q + V +V D+IQ+PAFL RQTDL+VA AKTG +IN
Sbjct: 77 GLKIFEEIKSTFNVPIITDVHESYQAQPVSEVVDVIQLPAFLARQTDLVVAMAKTGAVIN 136
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 194
+KK QF A+ M + K AGN N+++CERG+ +GYN+L+VD ++ M+ PV+
Sbjct: 137 VKKPQFLAAHEMKHIITKFGEAGNENIILCERGSCYGYNNLVVDMLAMDEMKNY-APVIF 195
Query: 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254
D TH+LQ+P G+ D ++ G R +AR+ +A+G+ G+F+E H DP A DGP
Sbjct: 196 DATHALQKPGGRS-D----SADGRRAQAAQLARSGMAIGIAGLFIEAHPDPSAAKCDGPC 250
Query: 255 QWPLRNXXXXXXXXVAIAKVSKG 277
PL A+ + KG
Sbjct: 251 ALPLDKLEPYLAQMKALDDLVKG 273
|
|
| TIGR_CMR|SPO_0947 SPO_0947 "3-deoxy-8-phosphooctulonate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 116/238 (48%), Positives = 151/238 (63%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
P ++AGP +ES +H +A +K G VFK+S+DKANRTS RG G+ G
Sbjct: 16 PLTIIAGPCQLESADHAQMIAGTLKEACDAAGAQYVFKASYDKANRTSLGGKRGMGIDAG 75
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
LK+L+ ++ +P++TDVH QC + D++QIPAFLCRQTD+L+AA TG +IN+
Sbjct: 76 LKVLDDIRRTMGVPVLTDVHSEAQCAIAAEAVDVLQIPAFLCRQTDMLLAAGNTGAVINV 135
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVAD 195
KKGQF A M N +K+ GN N+++ ERG FGYN L+ D R L M + PVV D
Sbjct: 136 KKGQFLAPWEMGNIVDKIASTGNENILLTERGVSFGYNTLVADMRALPIMAQTGYPVVMD 195
Query: 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
THS+QQP G+ GG +SGG RE P +AR A+AVG VFME H DP NAP DGP
Sbjct: 196 ATHSVQQPGGR----GG-SSGGQREFAPVMARAAVAVGTAAVFMETHQDPDNAPCDGP 248
|
|
| UNIPROTKB|P0A715 kdsA "3-deoxy-D-manno-octulosonate 8-phosphate synthase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 120/269 (44%), Positives = 171/269 (63%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G NV+ES + MR+ +H +++ K+G+P VFK+SFDKANR+S S+RGPG+ EG
Sbjct: 18 PFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEG 77
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
+KI +++K + + I+TDVHE Q + V V D+IQ+PAFL RQTDL+ A AKTG +IN+
Sbjct: 78 MKIFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINV 137
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREA--NCPVV 193
KK QF + M N +K + GN V++C+RG FGY++L+VD M++ N PV+
Sbjct: 138 KKPQFVSPGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVI 197
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTH+LQ D G ASGG R + +AR +AVG+ G+F+E H DP +A DGP
Sbjct: 198 FDVTHALQCR-----DPFGAASGGRRAQVAELARAGMAVGLAGLFIEAHPDPEHAKCDGP 252
Query: 254 TQWPLRNXXXXXXXXVAIAKVSKGKQRMN 282
+ PL AI + KG + ++
Sbjct: 253 SALPLAKLEPFLKQMKAIDDLVKGFEELD 281
|
|
| UNIPROTKB|Q9KQ29 kdsA "2-dehydro-3-deoxyphosphooctonate aldolase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 113/246 (45%), Positives = 161/246 (65%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
+PF L AG NV+ES + M++ +H ++ K+G+P VFK+SFDKANR+S S+RGPG+ E
Sbjct: 17 KPFTLFAGMNVLESRDLAMQICEHYVKVTDKLGIPYVFKASFDKANRSSVHSYRGPGLEE 76
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
G+KI +++K + + I+TDVH Q + V V D+IQ+PAFL RQTDL+ A AKTG +IN
Sbjct: 77 GMKIFQELKETFGVKIITDVHTEAQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVIN 136
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREAN--CPV 192
+KK QF + + N EK GN V++CERG+ GY++L+VD M++A+ P+
Sbjct: 137 VKKPQFMSPGQVGNIVEKFAECGNDKVILCERGSCHGYDNLVVDMLGFGVMKQASNGSPI 196
Query: 193 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDG 252
+ DVTHSLQ D G ASGG RE +A+ +A G+ G+F+E H +P A DG
Sbjct: 197 IFDVTHSLQMR-----DPSGAASGGRREQTVELAKAGLATGIAGLFIEAHPNPDKARCDG 251
Query: 253 PTQWPL 258
P+ PL
Sbjct: 252 PSALPL 257
|
|
| TIGR_CMR|VC_2175 VC_2175 "2-dehydro-3-deoxyphosphooctonate aldolase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 113/246 (45%), Positives = 161/246 (65%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
+PF L AG NV+ES + M++ +H ++ K+G+P VFK+SFDKANR+S S+RGPG+ E
Sbjct: 17 KPFTLFAGMNVLESRDLAMQICEHYVKVTDKLGIPYVFKASFDKANRSSVHSYRGPGLEE 76
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
G+KI +++K + + I+TDVH Q + V V D+IQ+PAFL RQTDL+ A AKTG +IN
Sbjct: 77 GMKIFQELKETFGVKIITDVHTEAQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVIN 136
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREAN--CPV 192
+KK QF + + N EK GN V++CERG+ GY++L+VD M++A+ P+
Sbjct: 137 VKKPQFMSPGQVGNIVEKFAECGNDKVILCERGSCHGYDNLVVDMLGFGVMKQASNGSPI 196
Query: 193 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDG 252
+ DVTHSLQ D G ASGG RE +A+ +A G+ G+F+E H +P A DG
Sbjct: 197 IFDVTHSLQMR-----DPSGAASGGRREQTVELAKAGLATGIAGLFIEAHPNPDKARCDG 251
Query: 253 PTQWPL 258
P+ PL
Sbjct: 252 PSALPL 257
|
|
| TIGR_CMR|CJE_0433 CJE_0433 "3-deoxy-8-phosphooctulonate synthase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 125/246 (50%), Positives = 157/246 (63%)
Query: 19 LLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI 78
L+AGP VIES++ I ++A+ +K+ + + FKSSFDKANRTS SFRGPG+ EGLKI
Sbjct: 6 LIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFDKANRTSINSFRGPGLEEGLKI 65
Query: 79 LEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKG 138
L+ VK + + I+TD+HE+ Q V +VAD++QIPAFLCRQTDLLVAAAKT INIKKG
Sbjct: 66 LQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAFLCRQTDLLVAAAKTKAKINIKKG 125
Query: 139 QFCASSVMVNSAEKV-----------RLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE 187
QF S + S +KV A V V ERG FGY +L+VD R+L MRE
Sbjct: 126 QFLNPSDIKYSVKKVLQTRGIEDEGYEAAQRNGVFVAERGASFGYGNLVVDMRSLVIMRE 185
Query: 188 ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247
PV+ D THS+Q P GG +SGG E + +AR A AVG+DG F E H +P
Sbjct: 186 F-APVIFDATHSVQMPGA----AGG-SSGGKSEFVEPLARAAAAVGIDGFFFETHINPCE 239
Query: 248 APVDGP 253
A DGP
Sbjct: 240 ALCDGP 245
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3A372 | KDSA_PELCD | 2, ., 5, ., 1, ., 5, 5 | 0.4942 | 0.8896 | 0.9314 | yes | no |
| A9L2C8 | KDSA_SHEB9 | 2, ., 5, ., 1, ., 5, 5 | 0.4809 | 0.8862 | 0.9113 | yes | no |
| O50044 | KDSA_PEA | 2, ., 5, ., 1, ., 5, 5 | 0.9034 | 1.0 | 1.0 | N/A | no |
| B5E8N4 | KDSA_GEOBB | 2, ., 5, ., 1, ., 5, 5 | 0.5 | 0.8862 | 0.9413 | yes | no |
| A3D0G8 | KDSA_SHEB5 | 2, ., 5, ., 1, ., 5, 5 | 0.4809 | 0.8862 | 0.9113 | yes | no |
| B0TR22 | KDSA_SHEHH | 2, ., 5, ., 1, ., 5, 5 | 0.4770 | 0.8862 | 0.9113 | yes | no |
| B0U657 | KDSA_XYLFM | 2, ., 5, ., 1, ., 5, 5 | 0.5074 | 0.9137 | 0.9601 | yes | no |
| Q087H9 | KDSA_SHEFN | 2, ., 5, ., 1, ., 5, 5 | 0.4719 | 0.9034 | 0.9257 | yes | no |
| A1RND3 | KDSA_SHESW | 2, ., 5, ., 1, ., 5, 5 | 0.4847 | 0.8862 | 0.9113 | yes | no |
| Q2KVK9 | KDSA_BORA1 | 2, ., 5, ., 1, ., 5, 5 | 0.4870 | 0.9103 | 0.9361 | yes | no |
| A6WSE4 | KDSA_SHEB8 | 2, ., 5, ., 1, ., 5, 5 | 0.4809 | 0.8862 | 0.9113 | yes | no |
| B8CKA0 | KDSA_SHEPW | 2, ., 5, ., 1, ., 5, 5 | 0.4770 | 0.8862 | 0.9113 | yes | no |
| A9IIP6 | KDSA_BORPD | 2, ., 5, ., 1, ., 5, 5 | 0.5186 | 0.8862 | 0.9049 | yes | no |
| Q12QR3 | KDSA_SHEDO | 2, ., 5, ., 1, ., 5, 5 | 0.4809 | 0.8862 | 0.8986 | yes | no |
| C5CSV4 | KDSA_VARPS | 2, ., 5, ., 1, ., 5, 5 | 0.5111 | 0.8862 | 0.9017 | yes | no |
| A0KT94 | KDSA_SHESA | 2, ., 5, ., 1, ., 5, 5 | 0.4847 | 0.8862 | 0.9113 | yes | no |
| Q8RE91 | KDSA_FUSNN | 2, ., 5, ., 1, ., 5, 5 | 0.5210 | 0.8827 | 0.9208 | yes | no |
| Q5ZWA3 | KDSA_LEGPH | 2, ., 5, ., 1, ., 5, 5 | 0.5114 | 0.8862 | 0.9379 | yes | no |
| B5EPM6 | KDSA_ACIF5 | 2, ., 5, ., 1, ., 5, 5 | 0.5227 | 0.8931 | 0.9217 | yes | no |
| A8H7A0 | KDSA_SHEPA | 2, ., 5, ., 1, ., 5, 5 | 0.4809 | 0.8862 | 0.9113 | yes | no |
| Q9AV97 | KDSA1_ARATH | 2, ., 5, ., 1, ., 5, 5 | 0.8965 | 1.0 | 1.0 | yes | no |
| Q5X5Y5 | KDSA_LEGPA | 2, ., 5, ., 1, ., 5, 5 | 0.5114 | 0.8862 | 0.9379 | yes | no |
| Q5WXA7 | KDSA_LEGPL | 2, ., 5, ., 1, ., 5, 5 | 0.5152 | 0.8862 | 0.9379 | yes | no |
| Q8EAR9 | KDSA_SHEON | 2, ., 5, ., 1, ., 5, 5 | 0.4847 | 0.8862 | 0.9113 | yes | no |
| B8E809 | KDSA_SHEB2 | 2, ., 5, ., 1, ., 5, 5 | 0.4809 | 0.8862 | 0.9113 | yes | no |
| A9BN40 | KDSA_DELAS | 2, ., 5, ., 1, ., 5, 5 | 0.5112 | 0.8793 | 0.8947 | yes | no |
| A5EW23 | KDSA_DICNV | 2, ., 5, ., 1, ., 5, 5 | 0.4887 | 0.9 | 0.9422 | yes | no |
| Q1H010 | KDSA_METFK | 2, ., 5, ., 1, ., 5, 5 | 0.5303 | 0.8862 | 0.9211 | yes | no |
| A3QH22 | KDSA_SHELP | 2, ., 5, ., 1, ., 5, 5 | 0.4770 | 0.8862 | 0.9113 | yes | no |
| Q87DY7 | KDSA_XYLFT | 2, ., 5, ., 1, ., 5, 5 | 0.5074 | 0.9137 | 0.9601 | yes | no |
| B2I936 | KDSA_XYLF2 | 2, ., 5, ., 1, ., 5, 5 | 0.5074 | 0.9137 | 0.9601 | yes | no |
| Q1IKD0 | KDSA_KORVE | 2, ., 5, ., 1, ., 5, 5 | 0.5450 | 0.8689 | 0.9064 | yes | no |
| B7J6R3 | KDSA_ACIF2 | 2, ., 5, ., 1, ., 5, 5 | 0.5227 | 0.8931 | 0.9217 | yes | no |
| Q6NQL4 | KDSA2_ARATH | 2, ., 5, ., 1, ., 5, 5 | 0.8719 | 0.9965 | 0.9931 | no | no |
| Q5N119 | KDSA_SYNP6 | 2, ., 5, ., 1, ., 5, 5 | 0.5078 | 0.8655 | 0.8838 | yes | no |
| Q5NZ70 | KDSA_AROAE | 2, ., 5, ., 1, ., 5, 5 | 0.4907 | 0.9103 | 0.9462 | yes | no |
| Q0HFD4 | KDSA_SHESM | 2, ., 5, ., 1, ., 5, 5 | 0.4809 | 0.8862 | 0.9113 | yes | no |
| A5IB80 | KDSA_LEGPC | 2, ., 5, ., 1, ., 5, 5 | 0.5114 | 0.8862 | 0.9379 | yes | no |
| A4Y3K6 | KDSA_SHEPC | 2, ., 5, ., 1, ., 5, 5 | 0.4847 | 0.8862 | 0.9113 | yes | no |
| Q9PDU0 | KDSA_XYLFA | 2, ., 5, ., 1, ., 5, 5 | 0.5037 | 0.9137 | 0.9601 | yes | no |
| Q31KV0 | KDSA_SYNE7 | 2, ., 5, ., 1, ., 5, 5 | 0.5078 | 0.8655 | 0.8838 | yes | no |
| B8GQ74 | KDSA_THISH | 2, ., 5, ., 1, ., 5, 5 | 0.5265 | 0.8931 | 0.925 | yes | no |
| A1VLH2 | KDSA_POLNA | 2, ., 5, ., 1, ., 5, 5 | 0.5037 | 0.8862 | 0.9017 | yes | no |
| Q604M5 | KDSA_METCA | 2, ., 5, ., 1, ., 5, 5 | 0.5114 | 0.8862 | 0.9081 | yes | no |
| A8EXC8 | KDSA_RICCK | 2, ., 5, ., 1, ., 5, 5 | 0.5057 | 0.8896 | 0.9416 | yes | no |
| Q3SL44 | KDSA_THIDA | 2, ., 5, ., 1, ., 5, 5 | 0.5113 | 0.8931 | 0.925 | yes | no |
| B8HXG7 | KDSA_CYAP4 | 2, ., 5, ., 1, ., 5, 5 | 0.5038 | 0.8724 | 0.9267 | yes | no |
| B3E467 | KDSA_GEOLS | 2, ., 5, ., 1, ., 5, 5 | 0.5192 | 0.8793 | 0.9375 | yes | no |
| Q0HYK2 | KDSA_SHESR | 2, ., 5, ., 1, ., 5, 5 | 0.4847 | 0.8862 | 0.9113 | yes | no |
| C6E0M6 | KDSA_GEOSM | 2, ., 5, ., 1, ., 5, 5 | 0.5038 | 0.8862 | 0.9413 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.5.1.55 | 0.993 |
| 3rd Layer | 2.5.1 | 0.998 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 290 | |||
| PLN03033 | 290 | PLN03033, PLN03033, 2-dehydro-3-deoxyphosphooctona | 0.0 | |
| TIGR01362 | 258 | TIGR01362, KDO8P_synth, 3-deoxy-8-phosphooctulonat | 1e-161 | |
| PRK05198 | 264 | PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctona | 1e-158 | |
| COG2877 | 279 | COG2877, KdsA, 3-deoxy-D-manno-octulosonic acid (K | 1e-137 | |
| pfam00793 | 271 | pfam00793, DAHP_synth_1, DAHP synthetase I family | 1e-104 | |
| PRK12457 | 281 | PRK12457, PRK12457, 2-dehydro-3-deoxyphosphooctona | 1e-101 | |
| PRK13398 | 266 | PRK13398, PRK13398, 3-deoxy-7-phosphoheptulonate s | 3e-41 | |
| TIGR01361 | 260 | TIGR01361, DAHP_synth_Bsub, phospho-2-dehydro-3-de | 2e-40 | |
| COG2876 | 286 | COG2876, AroA, 3-deoxy-D-arabino-heptulosonate 7-p | 3e-39 | |
| PRK08673 | 335 | PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate s | 2e-38 | |
| PRK12595 | 360 | PRK12595, PRK12595, bifunctional 3-deoxy-7-phospho | 2e-32 | |
| PRK13396 | 352 | PRK13396, PRK13396, 3-deoxy-7-phosphoheptulonate s | 1e-24 | |
| PRK13397 | 250 | PRK13397, PRK13397, 3-deoxy-7-phosphoheptulonate s | 5e-24 |
| >gnl|CDD|178601 PLN03033, PLN03033, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 604 bits (1559), Expect = 0.0
Identities = 263/290 (90%), Positives = 279/290 (96%)
Query: 1 MDPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKAN 60
M S+ L+NQLKAAEPFFLLAGPNVIESEEHI+RMAKHIK ISTK+GLPLVFKSSFDKAN
Sbjct: 1 MASSSLLYNQLKAAEPFFLLAGPNVIESEEHILRMAKHIKDISTKLGLPLVFKSSFDKAN 60
Query: 61 RTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQT 120
RTSSKSFRGPGM EGLKILEKVK+AYD+PIVTDVHE+ QCE VGKVADIIQIPAFLCRQT
Sbjct: 61 RTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKVADIIQIPAFLCRQT 120
Query: 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
DLLVAAAKTGKIINIKKGQFCA SVM NSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR
Sbjct: 121 DLLVAAAKTGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
Query: 181 NLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240
NLEWMREANCPVVAD+THSLQQPAGKKLDGGGVASGGLRELIPCIARTA+AVGVDG+FME
Sbjct: 181 NLEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFME 240
Query: 241 VHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290
VHDDPL+APVDGPTQWPLR+LEELLEEL+AIA+V+KGKQR IDLTP+RD
Sbjct: 241 VHDDPLSAPVDGPTQWPLRHLEELLEELIAIARVTKGKQRFQIDLTPYRD 290
|
Length = 290 |
| >gnl|CDD|130429 TIGR01362, KDO8P_synth, 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Score = 449 bits (1156), Expect = e-161
Identities = 162/263 (61%), Positives = 203/263 (77%), Gaps = 5/263 (1%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
E FFL+AGP VIESE+H +R+A+ +K +++K+G+P +FKSSFDKANR+S SFRGPG+ E
Sbjct: 1 EKFFLIAGPCVIESEDHALRVAEKLKELTSKLGVPFIFKSSFDKANRSSIHSFRGPGLEE 60
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GLKIL+KVK + +PI+TDVHE+ QCE V +V DIIQIPAFLCRQTDLLVAAAKTG+I+N
Sbjct: 61 GLKILQKVKEEFGVPILTDVHESSQCEPVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVN 120
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 194
+KKGQF + M N EKV GN N+++CERGT FGYN+L+VD R+L MRE CPV+
Sbjct: 121 VKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMRELGCPVIF 180
Query: 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254
D THS+QQP G G ASGGLRE +P +AR A+AVG+DG+FME H DP NA DGP
Sbjct: 181 DATHSVQQP-----GGLGGASGGLREFVPTLARAAVAVGIDGLFMETHPDPKNAKSDGPN 235
Query: 255 QWPLRNLEELLEELVAIAKVSKG 277
PL LE LLE+L+AI ++K
Sbjct: 236 MLPLSELEGLLEKLLAIDALTKS 258
|
This model describes 3-deoxy-8-phosphooctulonate synthase. Alternate names include 2-dehydro-3-deoxyphosphooctonate aldolase, 3-deoxy-d-manno-octulosonic acid 8-phosphate and KDO-8 phosphate synthetase. It catalyzes the aldol condensation of phosphoenolpyruvate with D-arabinose 5-phosphate: phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 258 |
| >gnl|CDD|235363 PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 441 bits (1136), Expect = e-158
Identities = 152/257 (59%), Positives = 190/257 (73%), Gaps = 5/257 (1%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
PFFL+AGP VIES + +R+A+H+K I+ K+G+P VFK+SFDKANR+S SFRGPG+ E
Sbjct: 9 LPFFLIAGPCVIESRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEE 68
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GLKIL++VK + +P++TDVHE Q V +V D++QIPAFLCRQTDLLVAAAKTGK++N
Sbjct: 69 GLKILQEVKETFGVPVLTDVHEPEQAAPVAEVVDVLQIPAFLCRQTDLLVAAAKTGKVVN 128
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 194
IKKGQF A M N +KVR AGN +++CERGT FGYN+L+VD R L MRE PV+
Sbjct: 129 IKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRGLPIMRETGAPVIF 188
Query: 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254
D THS+Q P G G +SGG RE +P +AR A+AVGV G+F+E H DP NA DGP
Sbjct: 189 DATHSVQLP-----GGQGGSSGGQREFVPVLARAAVAVGVAGLFIETHPDPDNALSDGPN 243
Query: 255 QWPLRNLEELLEELVAI 271
PL LE LLE+L AI
Sbjct: 244 MLPLDKLEPLLEQLKAI 260
|
Length = 264 |
| >gnl|CDD|225432 COG2877, KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 389 bits (1002), Expect = e-137
Identities = 147/263 (55%), Positives = 188/263 (71%), Gaps = 5/263 (1%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
PF L+AGP VIES + + +A+H+K ++ K+G+P VFKSSFDKANR+S S+RGPG+ E
Sbjct: 16 LPFVLIAGPCVIESRDLALEIAEHLKELTEKLGIPYVFKSSFDKANRSSIHSYRGPGLEE 75
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GLKIL++VK + +PI+TDVHE Q + V +V D++QIPAFLCRQTDLLVAAAKTG ++N
Sbjct: 76 GLKILQEVKEEFGVPILTDVHEPSQAQPVAEVVDVLQIPAFLCRQTDLLVAAAKTGAVVN 135
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 194
+KKGQF A M N EK GN V++CERG FGYN+L+VD R+L M+E PV+
Sbjct: 136 VKKGQFLAPWDMKNIVEKFLETGNNKVILCERGASFGYNNLVVDMRSLPIMKEFGAPVIF 195
Query: 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254
D THS+QQP G G +SGG RE +P +AR A+AVGV G+F+E H DP NA DGP
Sbjct: 196 DATHSVQQP-----GGQGGSSGGRREFVPTLARAAVAVGVAGLFIETHPDPDNAKSDGPN 250
Query: 255 QWPLRNLEELLEELVAIAKVSKG 277
PL LE LLE+L AI + K
Sbjct: 251 MLPLDKLEALLEQLKAIDDLVKS 273
|
Length = 279 |
| >gnl|CDD|216123 pfam00793, DAHP_synth_1, DAHP synthetase I family | Back alignment and domain information |
|---|
Score = 303 bits (779), Expect = e-104
Identities = 95/266 (35%), Positives = 138/266 (51%), Gaps = 17/266 (6%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
++AGP IES E M A+ +K + K+ LP++ ++ F+K RTS F+G G G
Sbjct: 17 RLLVIAGPCSIESPEAAMEYAERLKELGAKLKLPIIMRAYFEKP-RTSPVGFKGLGNDPG 75
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
LKIL +VK +PI T+V + + + V +VADI QI A DLL AA+ T K + +
Sbjct: 76 LKILFRVKDGLGLPIATEVLDPIDPQYVAEVADIGQIGARTTESQDLLEAASGTSKPVGL 135
Query: 136 KKGQFCASSVMVNSAEKVRLAG-NPNVMVCERGTMFGY--NDLIVDPRNLEWMREANC-- 190
K+G A M+ +AE G P ++CERG GY N L +D + ++E
Sbjct: 136 KRGTDLAIDEMLAAAEYHLFLGNTPGNILCERGIRGGYGPNRLTLDVSAVPILKEETGHL 195
Query: 191 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPV 250
PV+ D +HS + GG + L+P +AR AIAVG DG+ +EVH +P NA
Sbjct: 196 PVMVDPSHSNGRK-----------DGGRQPLVPPLARAAIAVGADGLMIEVHPNPGNALS 244
Query: 251 DGPTQWPLRNLEELLEELVAIAKVSK 276
DGP Q E L + ++
Sbjct: 245 DGPQQLKYGVSETDACILWELTELVL 270
|
Members of this family catalyze the first step in aromatic amino acid biosynthesis from chorismate. E-coli has three related synthetases, which are inhibited by different aromatic amino acids. This family also includes KDSA which has very similar catalytic activity but is involved in the first step of liposaccharide biosynthesis. Length = 271 |
| >gnl|CDD|237105 PRK12457, PRK12457, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 297 bits (761), Expect = e-101
Identities = 124/271 (45%), Positives = 173/271 (63%), Gaps = 7/271 (2%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G NV+ES + + + ++ K+G+P VFK+SFDKANR+S S+RG G+ EG
Sbjct: 16 PFVLFGGINVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEG 75
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
L+I E+VK + +P++TDVHE Q V +VAD++Q+PAFL RQTDL+VA AKTGK +NI
Sbjct: 76 LRIFEEVKARFGVPVITDVHEVEQAAPVAEVADVLQVPAFLARQTDLVVAIAKTGKPVNI 135
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREA--NCPVV 193
KK QF + + M + K R AGN V++CERG+ FGY++L+VD M+ + PV+
Sbjct: 136 KKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTTGDLPVI 195
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTHSLQ D G ASGG R + +AR +AVG+ G+F+E H DP A DGP
Sbjct: 196 FDVTHSLQCR-----DPLGAASGGRRRQVLDLARAGMAVGLAGLFLEAHPDPDRARCDGP 250
Query: 254 TQWPLRNLEELLEELVAIAKVSKGKQRMNID 284
+ PL LE L ++ A+ + K ++I
Sbjct: 251 SALPLDQLEPFLSQVKALDDLVKSFPPLDIR 281
|
Length = 281 |
| >gnl|CDD|184028 PRK13398, PRK13398, 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 3e-41
Identities = 86/258 (33%), Positives = 138/258 (53%), Gaps = 26/258 (10%)
Query: 19 LLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI 78
++AGP +ESEE ++++A+ +K + + FK RTS SF+G G EGLKI
Sbjct: 30 IIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKP------RTSPYSFQGLG-EEGLKI 82
Query: 79 LEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKG 138
L++V Y++P+VT+V +T EEV AD++QI + + +LL KT K I +K+G
Sbjct: 83 LKEVGDKYNLPVVTEVMDTRDVEEVADYADMLQIGSRNMQNFELLKEVGKTKKPILLKRG 142
Query: 139 QFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMRE-ANCPVVAD 195
+ +AE + GN NV++CERG T Y +D + ++E ++ P++ D
Sbjct: 143 MSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVD 202
Query: 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQ 255
+H G+ REL+ +A+ AIA G DG+ +EVH +P A D
Sbjct: 203 PSH----ATGR------------RELVIPMAKAAIAAGADGLMIEVHPEPEKALSDARQT 246
Query: 256 WPLRNLEELLEELVAIAK 273
++EL++EL +AK
Sbjct: 247 LNFEEMKELVDELKPMAK 264
|
Length = 266 |
| >gnl|CDD|233375 TIGR01361, DAHP_synth_Bsub, phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-40
Identities = 84/258 (32%), Positives = 130/258 (50%), Gaps = 26/258 (10%)
Query: 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGL 76
++AGP +ESEE IM A+ +K K+ FK RTS SF+G G EGL
Sbjct: 26 PIVIAGPCSVESEEQIMETARFVKEAGAKILRGGAFKP------RTSPYSFQGLG-EEGL 78
Query: 77 KILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIK 136
K+L + + +P+VT+V + E V + ADI+QI A + +LL K GK + +K
Sbjct: 79 KLLRRAADEHGLPVVTEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLK 138
Query: 137 KGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMR-EANCPVV 193
+G + +AE + +GN NV++CERG T +D + ++ E + P++
Sbjct: 139 RGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPII 198
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
D +H AG+ R+L+ +A+ AIA G DG+ +EVH DP A D
Sbjct: 199 VDPSH----AAGR------------RDLVIPLAKAAIAAGADGLMIEVHPDPEKALSDSK 242
Query: 254 TQWPLRNLEELLEELVAI 271
Q + L++EL A+
Sbjct: 243 QQLTPEEFKRLVKELRAL 260
|
This model describes one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterized member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis [Amino acid biosynthesis, Aromatic amino acid family]. Length = 260 |
| >gnl|CDD|225431 COG2876, AroA, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 3e-39
Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 26/263 (9%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
++AGP +ESEE + A+ +K G + +F RTS SF+G G E
Sbjct: 44 RALRVIAGPCSVESEEQVRETAESVK----AAGAKALRGGAFKP--RTSPYSFQGLG-EE 96
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GLK+L++ +P+VT+V + E + ADI+Q+ A + LL + K +
Sbjct: 97 GLKLLKRAADETGLPVVTEVMDVRDVEAAAEYADILQVGARNMQNFALLKEVGRQNKPVL 156
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMR-EANCP 191
+K+G +N+AE + GN NV++CERG T +D + ++ E + P
Sbjct: 157 LKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQETHLP 216
Query: 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 251
V+ D +H G+ R+L+ +A+ AIA G DG+ +EVH DP A D
Sbjct: 217 VIVDPSH----ATGR------------RDLVEPLAKAAIAAGADGLMIEVHPDPEKALSD 260
Query: 252 GPTQWPLRNLEELLEELVAIAKV 274
Q EEL++EL A+A
Sbjct: 261 AKQQLTPEEFEELVKELRALADA 283
|
Length = 286 |
| >gnl|CDD|181535 PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-38
Identities = 91/274 (33%), Positives = 135/274 (49%), Gaps = 44/274 (16%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKV---GLPLVFKSSFDKANRTSSKSFRGPG 71
++AGP +ESEE I+ +A+ +K ++ G FK RTS SF+G G
Sbjct: 92 GKPVVIAGPCSVESEEQILEIARAVKEAGAQILRGG---AFKP------RTSPYSFQGLG 142
Query: 72 MVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGK 131
EGLK+L + + +PIVT+V + E V + DI+QI A + DLL KT K
Sbjct: 143 -EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEYVDILQIGARNMQNFDLLKEVGKTNK 201
Query: 132 IINIKKGQFCAS-SVMVNSAEKVRLAGNPNVMVCERG-------TMFGYNDLIVDPRNLE 183
+ +K+G A+ + +AE + GNPNV++CERG T DL P
Sbjct: 202 PVLLKRG-MSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTL-DLSAVP---- 255
Query: 184 WMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242
+++ + PV+ D +H GK R+L+ +A A+A G DG+ +EVH
Sbjct: 256 VIKKLTHLPVIVDPSH----ATGK------------RDLVEPLALAAVAAGADGLIVEVH 299
Query: 243 DDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSK 276
DP A DGP EEL+++L AIA+
Sbjct: 300 PDPEKALSDGPQSLTPEEFEELMKKLRAIAEALG 333
|
Length = 335 |
| >gnl|CDD|183614 PRK12595, PRK12595, bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-32
Identities = 81/274 (29%), Positives = 121/274 (44%), Gaps = 48/274 (17%)
Query: 19 LLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI 78
+ GP +ES E + +AK +K+ K+ FK RTS F+G G VEGLKI
Sbjct: 121 FIFGPCSVESYEQVEAVAKALKAKGLKLLRGGAFKP------RTSPYDFQGLG-VEGLKI 173
Query: 79 LEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKG 138
L++V Y + +++++ E D+IQI A + +LL AA + K + +K+G
Sbjct: 174 LKQVADEYGLAVISEIVNPADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRG 233
Query: 139 QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLE-WMR----------- 186
+ +AE + GN +++CERG R E R
Sbjct: 234 LSATIEEFIYAAEYIMSQGNGQIILCERGI-----------RTYEKATRNTLDISAVPIL 282
Query: 187 --EANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244
E + PV+ DVTHS G R+L+ A+ A+A+G DGV EVH D
Sbjct: 283 KQETHLPVMVDVTHST----------------GRRDLLLPTAKAALAIGADGVMAEVHPD 326
Query: 245 PLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGK 278
P A D Q + + L+EL +A K
Sbjct: 327 PAVALSDSAQQMDIPEFDRFLDELKPLANKLNAK 360
|
Length = 360 |
| >gnl|CDD|237376 PRK13396, PRK13396, 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-24
Identities = 81/268 (30%), Positives = 126/268 (47%), Gaps = 37/268 (13%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
P ++AGP +E+EE I+ AK +K+ K +K RTS +F+G G
Sbjct: 101 PVVVVAGPCSVENEEMIVETAKRVKAAGAKFLRGGAYKP------RTSPYAFQGHGE-SA 153
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
L++L + A + I+T+V + E++ +VAD+IQ+ A + LL K + +
Sbjct: 154 LELLAAAREATGLGIITEVMDAADLEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLL 213
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERG-----TMFGYN--DLIVDP--RNLEWMR 186
K+G + +AE + AGNPNV++CERG + N DL V P R+L
Sbjct: 214 KRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSL---- 269
Query: 187 EANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPL 246
+ P++ D +H G E +P +A AIA G D + +EVH +P
Sbjct: 270 -THLPIMIDPSHGT----------------GKSEYVPSMAMAAIAAGTDSLMIEVHPNPA 312
Query: 247 NAPVDGPTQWPLRNLEELLEELVAIAKV 274
A DGP + L++EL I K
Sbjct: 313 KALSDGPQSLTPDRFDRLMQELAVIGKT 340
|
Length = 352 |
| >gnl|CDD|172030 PRK13397, PRK13397, 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 5e-24
Identities = 75/257 (29%), Positives = 123/257 (47%), Gaps = 34/257 (13%)
Query: 19 LLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI 78
+ GP IES +HI A K + F+ K RTS+ SF+G G+ +G++
Sbjct: 18 FIVGPCSIESYDHIRLAASSAKKLGYNY-----FRGGAYKP-RTSAASFQGLGL-QGIRY 70
Query: 79 LEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKG 138
L +V + + V+++ Q EE D+IQ+ A + + L + K I K+G
Sbjct: 71 LHEVCQEFGLLSVSEIMSERQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRG 130
Query: 139 QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRN-LEWM------REANCP 191
+ + ++ G N+++CERG + GY+ V+ RN L+ M ++ + P
Sbjct: 131 LMATIEEYLGALSYLQDTGKSNIILCERG-VRGYD---VETRNMLDIMAVPIIQQKTDLP 186
Query: 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 251
++ DV+HS G R+L+ A+ A AVG +G+ MEVH DP +A D
Sbjct: 187 IIVDVSHST----------------GRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSD 230
Query: 252 GPTQWPLRNLEELLEEL 268
Q + LE+L +EL
Sbjct: 231 AAQQIDYKQLEQLGQEL 247
|
Length = 250 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| PLN03033 | 290 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 100.0 | |
| PRK05198 | 264 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 100.0 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 100.0 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 100.0 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 100.0 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 100.0 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 100.0 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 100.0 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 100.0 | |
| COG2877 | 279 | KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phos | 100.0 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 100.0 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 100.0 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 100.0 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 100.0 | |
| COG2089 | 347 | SpsE Sialic acid synthase [Cell envelope biogenesi | 100.0 | |
| PF00793 | 270 | DAHP_synth_1: DAHP synthetase I family; InterPro: | 100.0 | |
| PF03102 | 241 | NeuB: NeuB family; InterPro: IPR013132 NeuB is the | 100.0 | |
| PRK09261 | 349 | phospho-2-dehydro-3-deoxyheptonate aldolase; Valid | 100.0 | |
| TIGR00034 | 344 | aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase | 100.0 | |
| PRK12755 | 353 | phospho-2-dehydro-3-deoxyheptonate aldolase; Provi | 100.0 | |
| PRK12822 | 356 | phospho-2-dehydro-3-deoxyheptonate aldolase; Provi | 100.0 | |
| PRK12756 | 348 | phospho-2-dehydro-3-deoxyheptonate aldolase; Provi | 100.0 | |
| COG0722 | 351 | AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 100.0 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 97.94 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 97.89 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.73 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 97.68 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 97.66 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 97.59 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.5 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 97.3 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 97.21 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 97.15 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 97.14 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 97.13 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.08 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.07 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 97.06 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 97.0 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.93 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 96.9 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 96.89 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 96.87 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 96.86 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 96.85 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 96.84 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 96.79 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 96.77 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 96.62 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 96.62 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 96.62 | |
| PRK04165 | 450 | acetyl-CoA decarbonylase/synthase complex subunit | 96.61 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 96.59 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 96.59 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 96.58 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 96.57 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 96.57 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 96.55 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 96.5 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 96.49 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 96.45 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 96.43 | |
| PLN02591 | 250 | tryptophan synthase | 96.37 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 96.34 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 96.33 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 96.28 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 96.24 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 96.19 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.18 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 96.13 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 96.08 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 96.06 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 96.04 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 96.03 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 96.02 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 96.02 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 96.02 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 95.97 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 95.82 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 95.81 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 95.8 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 95.78 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 95.75 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 95.73 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 95.73 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 95.69 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 95.68 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 95.6 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 95.56 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 95.55 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 95.51 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 95.48 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 95.47 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 95.46 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 95.43 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 95.36 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.35 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 95.33 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 95.18 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 95.18 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 95.16 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 95.15 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 95.11 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 95.1 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 95.07 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 95.06 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 95.0 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 94.92 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 94.86 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 94.83 | |
| PRK04161 | 329 | tagatose 1,6-diphosphate aldolase; Reviewed | 94.78 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 94.78 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 94.76 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 94.74 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 94.71 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 94.71 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 94.7 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 94.7 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 94.64 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 94.63 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 94.61 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 94.57 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 94.56 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 94.54 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 94.47 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 94.43 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 94.43 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 94.42 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 94.38 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 94.38 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 94.37 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 94.37 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 94.36 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 94.36 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 94.34 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 94.3 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 94.3 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 94.28 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 94.28 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 94.27 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 94.27 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 94.23 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 94.2 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 94.18 | |
| TIGR01232 | 325 | lacD tagatose 1,6-diphosphate aldolase. This famil | 94.15 | |
| PRK06739 | 352 | pyruvate kinase; Validated | 94.11 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 94.1 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 94.09 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 94.07 | |
| PF00113 | 295 | Enolase_C: Enolase, C-terminal TIM barrel domain; | 94.04 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 93.94 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 93.89 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 93.78 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 93.77 | |
| PRK12399 | 324 | tagatose 1,6-diphosphate aldolase; Reviewed | 93.69 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 93.61 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 93.53 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 93.5 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 93.49 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 93.49 | |
| cd00288 | 480 | Pyruvate_Kinase Pyruvate kinase (PK): Large allost | 93.49 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 93.43 | |
| PRK09206 | 470 | pyruvate kinase; Provisional | 93.39 | |
| PRK15452 | 443 | putative protease; Provisional | 93.28 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 93.27 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 93.27 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 93.25 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 93.24 | |
| COG0148 | 423 | Eno Enolase [Carbohydrate transport and metabolism | 93.16 | |
| PTZ00300 | 454 | pyruvate kinase; Provisional | 93.15 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 93.12 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 93.11 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 93.11 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 93.05 | |
| PLN02762 | 509 | pyruvate kinase complex alpha subunit | 93.04 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 93.04 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 93.02 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 92.93 | |
| PLN02623 | 581 | pyruvate kinase | 92.91 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 92.88 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 92.84 | |
| PRK06247 | 476 | pyruvate kinase; Provisional | 92.82 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 92.74 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 92.72 | |
| PRK09875 | 292 | putative hydrolase; Provisional | 92.69 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 92.69 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 92.52 | |
| PF02126 | 308 | PTE: Phosphotriesterase family; InterPro: IPR00155 | 92.51 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 92.51 | |
| PTZ00066 | 513 | pyruvate kinase; Provisional | 92.46 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 92.45 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 92.3 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 92.25 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 92.24 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 92.18 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 92.11 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 92.05 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 92.01 | |
| PF00224 | 348 | PK: Pyruvate kinase, barrel domain; InterPro: IPR0 | 91.98 | |
| PRK13753 | 279 | dihydropteroate synthase; Provisional | 91.96 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 91.94 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 91.9 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 91.8 | |
| PRK05826 | 465 | pyruvate kinase; Provisional | 91.74 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 91.61 | |
| PTZ00081 | 439 | enolase; Provisional | 91.58 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 91.46 | |
| PLN02461 | 511 | Probable pyruvate kinase | 91.44 | |
| PRK06354 | 590 | pyruvate kinase; Provisional | 91.44 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 91.39 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 91.36 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 91.32 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 91.26 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 91.25 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 91.21 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 90.84 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 90.81 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 90.66 | |
| PF01474 | 439 | DAHP_synth_2: Class-II DAHP synthetase family; Int | 90.52 | |
| COG0191 | 286 | Fba Fructose/tagatose bisphosphate aldolase [Carbo | 90.51 | |
| TIGR01358 | 443 | DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthas | 90.45 | |
| PLN02291 | 474 | phospho-2-dehydro-3-deoxyheptonate aldolase | 90.37 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 90.24 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 90.22 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 90.14 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 90.07 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 90.05 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 90.04 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 89.99 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 89.97 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 89.94 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 89.92 | |
| PRK06852 | 304 | aldolase; Validated | 89.9 | |
| TIGR00381 | 389 | cdhD CO dehydrogenase/acetyl-CoA synthase, delta s | 89.81 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 89.8 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 89.74 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 89.62 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 89.6 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 89.28 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 89.25 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 89.19 | |
| PLN02229 | 427 | alpha-galactosidase | 89.1 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 89.05 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 89.04 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 88.96 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 88.92 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 88.91 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 88.86 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 88.78 | |
| PLN02765 | 526 | pyruvate kinase | 88.74 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 88.65 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 88.64 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 88.6 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 88.5 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 88.47 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 88.44 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 88.44 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 88.38 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 88.21 | |
| PRK13209 | 283 | L-xylulose 5-phosphate 3-epimerase; Reviewed | 88.2 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 88.09 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 87.96 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 87.95 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 87.9 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 87.88 | |
| PLN02692 | 412 | alpha-galactosidase | 87.86 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 87.69 | |
| PF02879 | 104 | PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, | 87.52 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 87.49 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 87.43 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 87.31 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 87.28 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 87.26 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 87.21 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 87.14 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 87.08 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 87.01 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 86.96 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 86.8 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 86.75 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 86.71 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 86.7 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 86.69 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 86.65 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 86.63 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 86.46 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 86.45 | |
| COG3623 | 287 | SgaU Putative L-xylulose-5-phosphate 3-epimerase [ | 86.42 | |
| PF12683 | 275 | DUF3798: Protein of unknown function (DUF3798); In | 86.36 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 86.3 | |
| PRK15447 | 301 | putative protease; Provisional | 86.24 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 86.15 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 86.07 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 86.05 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 86.05 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 86.02 | |
| PRK15063 | 428 | isocitrate lyase; Provisional | 85.99 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 85.99 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 85.96 | |
| PRK13210 | 284 | putative L-xylulose 5-phosphate 3-epimerase; Revie | 85.95 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 85.76 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 85.74 | |
| PLN02808 | 386 | alpha-galactosidase | 85.61 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 85.5 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 85.46 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 85.28 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 85.19 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 85.05 | |
| PRK09875 | 292 | putative hydrolase; Provisional | 84.99 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 84.92 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 84.91 | |
| PRK07094 | 323 | biotin synthase; Provisional | 84.91 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 84.86 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 84.82 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 84.76 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 84.75 | |
| TIGR01064 | 473 | pyruv_kin pyruvate kinase. This enzyme is a homote | 84.7 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 84.67 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 84.58 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 84.51 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 84.34 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 84.33 | |
| PRK04452 | 319 | acetyl-CoA decarbonylase/synthase complex subunit | 84.31 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 84.26 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 84.13 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 84.1 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 83.97 | |
| PRK00694 | 606 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha | 83.97 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 83.92 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 83.91 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 83.82 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 83.82 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 83.77 | |
| COG1456 | 467 | CdhE CO dehydrogenase/acetyl-CoA synthase gamma su | 83.72 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 83.69 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 83.59 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 83.56 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 83.52 | |
| PTZ00378 | 518 | hypothetical protein; Provisional | 83.41 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 83.35 | |
| TIGR01060 | 425 | eno phosphopyruvate hydratase. Alternate name: eno | 83.26 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 83.22 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 83.18 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 83.16 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 83.0 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 82.93 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 82.89 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 82.75 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 82.68 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 82.41 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 82.33 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 82.32 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 82.21 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 82.21 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 82.09 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 81.85 | |
| TIGR02082 | 1178 | metH 5-methyltetrahydrofolate--homocysteine methyl | 81.74 | |
| TIGR00542 | 279 | hxl6Piso_put hexulose-6-phosphate isomerase, putat | 81.64 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 81.59 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 81.52 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 81.45 | |
| PLN02979 | 366 | glycolate oxidase | 81.36 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 81.3 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 81.24 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 81.1 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 81.06 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 81.0 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 80.96 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 80.96 | |
| COG1735 | 316 | Php Predicted metal-dependent hydrolase with the T | 80.74 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 80.62 | |
| PRK14725 | 608 | pyruvate kinase; Provisional | 80.54 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 80.52 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 80.33 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 80.31 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 80.27 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 80.24 | |
| PF03599 | 386 | CdhD: CO dehydrogenase/acetyl-CoA synthase delta s | 80.21 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 80.16 | |
| PRK06498 | 531 | isocitrate lyase; Provisional | 80.12 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 80.1 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 80.04 |
| >PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-81 Score=570.07 Aligned_cols=290 Identities=91% Similarity=1.392 Sum_probs=284.9
Q ss_pred CCchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHH
Q 022892 1 MDPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILE 80 (290)
Q Consensus 1 ~~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~ 80 (290)
|-.|.-|||+++.++++++|||||++||+++.+++|++|+++++++|+..+++.+|+|+||||+|+|+|+|+++||+||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~lIAGPC~iEs~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~ 80 (290)
T PLN03033 1 MASSSLLYNQLKAAEPFFLLAGPNVIESEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILE 80 (290)
T ss_pred CcchhHHHHhcCCCCCeEEEecCChhcCHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCc
Q 022892 81 KVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 81 ~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~ 160 (290)
++++++|+|++||++++++++.+.+++|++|||+|+|+|++||+++|+++|||+||+|++++++||+.|+|+|.+.||++
T Consensus 81 ~vk~~~glpvvTeV~~~~q~~~vae~~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~ 160 (290)
T PLN03033 81 KVKVAYDLPIVTDVHESSQCEAVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMRNSAEKVRLAGNPN 160 (290)
T ss_pred HHHHHHCCceEEeeCCHHHHHHHHhhCcEEeeCcHHHHHHHHHHHHHccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
|+|||||++|+|+++.+|+++++.||++|+||++|+||++|+||+.+++++|+.++|+|++++.+++||+|+||||+|||
T Consensus 161 viLcERG~tFgy~~lv~D~r~ip~mk~~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiE 240 (290)
T PLN03033 161 VMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFME 240 (290)
T ss_pred EEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCccccccCCCCCCC
Q 022892 241 VHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290 (290)
Q Consensus 241 kH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~~~~~~~~~~~~~ 290 (290)
+|++||+|++|++++++|++|++|++++++++.+++.++|..||+||.||
T Consensus 241 vHpdP~~AlsDg~q~l~~~~l~~ll~~l~~i~~~~~~~~~~~~~~~~~~~ 290 (290)
T PLN03033 241 VHDDPLSAPVDGPTQWPLRHLEELLEELIAIARVTKGKQRFQIDLTPYRD 290 (290)
T ss_pred ecCCccccCCCcccCcCHHHHHHHHHHHHHHHHHHhccccCccCcccCCC
Confidence 99999999999999999999999999999999999999999999999997
|
|
| >PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-74 Score=522.06 Aligned_cols=260 Identities=58% Similarity=0.951 Sum_probs=252.5
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
.||.++++++|||||++||+++.+++|++|++++++.|+..+++.+|+|+||||||+|+|+|+++||+||+++++++|+|
T Consensus 4 ~ig~~~~~~~iAGPC~vEs~e~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~~Glp 83 (264)
T PRK05198 4 EVGNDLPFFLIAGPCVIESRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKETFGVP 83 (264)
T ss_pred eeCCCCceEEEecCCcccCHHHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCc
Confidence 46777789999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred EEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 90 IVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
++||++++.+++.+.+++|++|||+|+|+|++||+++|+++|||+||+|+++|++||+.|+|+|.+.||++|+|||||++
T Consensus 84 vvTeV~~~~~~~~v~~~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~t 163 (264)
T PRK05198 84 VLTDVHEPEQAAPVAEVVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTS 163 (264)
T ss_pred eEEEeCCHHHHHHHHhhCcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCC
Q 022892 170 FGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP 249 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~ 249 (290)
|+|+++.+|+++++.||++++||++|+||++|+||+ +++.++|+|++++.+++||+|+||||+|||.|++|++++
T Consensus 164 f~y~r~~~D~~~vp~~k~~~lPVi~DpSHsvq~pg~-----~~~~s~G~r~~v~~la~AAvA~GadGl~iEvHpdP~~Al 238 (264)
T PRK05198 164 FGYNNLVVDMRGLPIMRETGAPVIFDATHSVQLPGG-----QGGSSGGQREFVPVLARAAVAVGVAGLFIETHPDPDNAL 238 (264)
T ss_pred cCCCCeeechhhhHHHhhCCCCEEEeCCccccCCCC-----CCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeCCCccccC
Confidence 999999999999999999789999999999999994 578889999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 250 VDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 250 ~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
+|++++|+|++|++|+++++.++++
T Consensus 239 sDg~q~l~~~~~~~ll~~l~~i~~~ 263 (264)
T PRK05198 239 SDGPNMLPLDKLEPLLEQLKAIDDL 263 (264)
T ss_pred CCccccCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999875
|
|
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-74 Score=518.92 Aligned_cols=257 Identities=63% Similarity=1.031 Sum_probs=250.4
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV 94 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~ 94 (290)
+++++|||||++||+++.+++|++|++++++.|+..+++.+|+|+||||||+|+|+|+++||+||+++++++|+|++||+
T Consensus 1 ~~~~viAGPCsvEs~e~~~~~A~~lk~~~~~~~~~~~fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~~glpvvTeV 80 (258)
T TIGR01362 1 EKFFLIAGPCVIESEDHALRVAEKLKELTSKLGVPFIFKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEEFGVPILTDV 80 (258)
T ss_pred CCceEEecCCcccCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceEEEe
Confidence 36899999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred cCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 95 HETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 95 ~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
+++.+++.+.+++|++|||+|+|+|++||+++|+++|||+||+|+++|++||+.|+|+|.+.||++|+|||||++|+|++
T Consensus 81 ~~~~~~~~vae~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r 160 (258)
T TIGR01362 81 HESSQCEPVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNN 160 (258)
T ss_pred CCHHHHHHHHhhCcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCC
Q 022892 175 LIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254 (290)
Q Consensus 175 ~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~ 254 (290)
+.+|+++++.||++++||++|+||++|+||+ +|+.++|+|++++.++++|+++||||+|||.|++||++++|+++
T Consensus 161 ~~~D~~~ip~~k~~~~PVi~DpSHsvq~pg~-----~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvHpdP~~AlsDg~q 235 (258)
T TIGR01362 161 LVVDMRSLPIMRELGCPVIFDATHSVQQPGG-----LGGASGGLREFVPTLARAAVAVGIDGLFMETHPDPKNAKSDGPN 235 (258)
T ss_pred cccchhhhHHHHhcCCCEEEeCCccccCCCC-----CCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccc
Confidence 9999999999999999999999999999994 58888999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhC
Q 022892 255 QWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 255 sl~p~~l~~lv~~ir~~~~~lg 276 (290)
+++|++|++|+++++++++++.
T Consensus 236 ~l~~~~~~~ll~~l~~i~~~~~ 257 (258)
T TIGR01362 236 MLPLSELEGLLEKLLAIDALTK 257 (258)
T ss_pred cCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998764
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-73 Score=520.45 Aligned_cols=263 Identities=46% Similarity=0.760 Sum_probs=255.3
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
.||.++++++|||||++||+++.+++|++|+++++++|+.++++.+|+|+||||||+|+|+|+++||++|+++++++|+|
T Consensus 10 ~ig~~~~~~~iaGPCsvEs~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~Glp 89 (281)
T PRK12457 10 TVGNDLPFVLFGGINVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVP 89 (281)
T ss_pred EEcCCCceEEEecCCcccCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCc
Confidence 46667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 90 IVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
++|+++++.+++.+.+++|++|||+|+|+|++||+++|+++|||+||+|++++++||+.|+|+|.+.||++|+|||||++
T Consensus 90 vvTeV~~~~~~~~~ae~vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~ 169 (281)
T PRK12457 90 VITDVHEVEQAAPVAEVADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSS 169 (281)
T ss_pred eEEEeCCHHHHHHHhhhCeEEeeCchhhchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHhc--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 FGYNDLIVDPRNLEWMREA--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
|+|+++.+|+++++.||+. |+||++|+||++|+||+ +++.++|+|++++.+++||+|.||||+|||+|++||+
T Consensus 170 fgy~~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~-----~g~~s~G~re~v~~larAAvA~GaDGl~iEvHpdP~~ 244 (281)
T PRK12457 170 FGYDNLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDP-----LGAASGGRRRQVLDLARAGMAVGLAGLFLEAHPDPDR 244 (281)
T ss_pred CCCCCcccchHHHHHHHhhCCCCCEEEeCCccccCCCC-----CCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCccc
Confidence 9999999999999999994 99999999999999984 5788899999999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
||+|++++|++++|++|+++++.++++++.
T Consensus 245 AlsDg~q~l~~~~~~~l~~~l~~i~~~~~~ 274 (281)
T PRK12457 245 ARCDGPSALPLDQLEPFLSQVKALDDLVKS 274 (281)
T ss_pred cCCCcccccCHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999876
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-68 Score=502.50 Aligned_cols=245 Identities=31% Similarity=0.524 Sum_probs=236.0
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
.+|.++++++|||||+|||.++.+++|+++++. |+.+++..+|+ ||||||+|+|+| ++||++|+++++++||+
T Consensus 95 ~iGg~~~l~vIAGPCsIEs~eq~l~~A~~lk~~----g~~~~r~g~~k--pRtsp~sf~G~g-~~gl~~L~~~~~e~Gl~ 167 (352)
T PRK13396 95 PFGENHPVVVVAGPCSVENEEMIVETAKRVKAA----GAKFLRGGAYK--PRTSPYAFQGHG-ESALELLAAAREATGLG 167 (352)
T ss_pred EecCCCeEEEEEeCCcccCHHHHHHHHHHHHHc----CCCEEEeeeec--CCCCCcccCCch-HHHHHHHHHHHHHcCCc
Confidence 356677899999999999999999999999996 99999988887 999999999999 99999999999999999
Q ss_pred EEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-
Q 022892 90 IVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT- 168 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs- 168 (290)
|+||+||+.+++++.+++|++|||||+|+|++||+++|+++|||+|||||++|++||++|+++|.+.||++++|||||+
T Consensus 168 ~~tev~d~~~v~~~~~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~r 247 (352)
T PRK13396 168 IITEVMDAADLEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIR 247 (352)
T ss_pred EEEeeCCHHHHHHHHhhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC--CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCC
Q 022892 169 MF--GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 169 ~~--~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~ 245 (290)
+| +|+++++||++|+.||+ +|+||++|+||+. |.+++++.++++|+++||||+|||+||||
T Consensus 248 tf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~----------------G~sd~~~~~a~AAva~GAdGliIE~H~~p 311 (352)
T PRK13396 248 TFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGT----------------GKSEYVPSMAMAAIAAGTDSLMIEVHPNP 311 (352)
T ss_pred cCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccC----------------CcHHHHHHHHHHHHhhCCCeEEEEecCCc
Confidence 46 68899999999999999 8999999999996 88999999999999999999999999999
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 246 LNAPVDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 246 dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
|++++||++||+|++|++|++++|+++.++|+
T Consensus 312 d~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~ 343 (352)
T PRK13396 312 AKALSDGPQSLTPDRFDRLMQELAVIGKTVGR 343 (352)
T ss_pred ccCCChhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999987
|
|
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-67 Score=497.55 Aligned_cols=241 Identities=36% Similarity=0.545 Sum_probs=230.4
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
++++++|||||++|+.++.+++|++|+++ |+++++.+.|+ ||||||+|+|++ ++||++|+++|+++||+|+||
T Consensus 91 ~~~~~~IAGPCsiEs~e~~~~~A~~lk~~----ga~~~r~~~fK--pRTsp~sf~G~g-~~gL~~L~~~~~~~Gl~v~te 163 (335)
T PRK08673 91 GGKPVVIAGPCSVESEEQILEIARAVKEA----GAQILRGGAFK--PRTSPYSFQGLG-EEGLKLLAEAREETGLPIVTE 163 (335)
T ss_pred CCceEEEEecCccCCHHHHHHHHHHHHHh----chhhccCcEec--CCCCCccccccc-HHHHHHHHHHHHHcCCcEEEe
Confidence 56899999999999999999999999996 77765555554 999999999999 899999999999999999999
Q ss_pred ecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CC-C
Q 022892 94 VHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT-MF-G 171 (290)
Q Consensus 94 ~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~~-~ 171 (290)
+||+.+++++.+++|++||||++|+|++||+++|+++|||+|||||++|++||+.|+++|.+.||++++|||||+ +| +
T Consensus 164 v~d~~~~~~l~~~vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~ 243 (335)
T PRK08673 164 VMDPRDVELVAEYVDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFET 243 (335)
T ss_pred eCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 67 7
Q ss_pred CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCC
Q 022892 172 YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPV 250 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~ 250 (290)
|+++++||++++.||+ +++||++||||++ |.|++++.++++|+++||||+|||+||||||+++
T Consensus 244 ~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~----------------G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~als 307 (335)
T PRK08673 244 ATRNTLDLSAVPVIKKLTHLPVIVDPSHAT----------------GKRDLVEPLALAAVAAGADGLIVEVHPDPEKALS 307 (335)
T ss_pred cChhhhhHHHHHHHHHhcCCCEEEeCCCCC----------------ccccchHHHHHHHHHhCCCEEEEEecCCcccCCC
Confidence 8899999999999999 9999999999996 8899999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 251 DGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 251 D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
||++||+|++|++|++++|+++.++|.
T Consensus 308 D~~~sl~p~e~~~lv~~i~~i~~~~g~ 334 (335)
T PRK08673 308 DGPQSLTPEEFEELMKKLRAIAEALGR 334 (335)
T ss_pred cchhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999985
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-67 Score=484.16 Aligned_cols=241 Identities=36% Similarity=0.582 Sum_probs=228.5
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcE
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPI 90 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~ 90 (290)
||. +++++|||||+|||.++.+++|++|++ +|+.+++..+|+ |||+|++|+|++ ++|+++|+++|+++||+|
T Consensus 23 ~g~-~~~~~iaGPCsie~~~~~~~~A~~lk~----~g~~~~r~~~~k--pRTs~~s~~G~g-~~gl~~l~~~~~~~Gl~~ 94 (266)
T PRK13398 23 IGG-EEKIIIAGPCAVESEEQMVKVAEKLKE----LGVHMLRGGAFK--PRTSPYSFQGLG-EEGLKILKEVGDKYNLPV 94 (266)
T ss_pred EcC-CCEEEEEeCCcCCCHHHHHHHHHHHHH----cCCCEEEEeeec--CCCCCCccCCcH-HHHHHHHHHHHHHcCCCE
Confidence 444 489999999999999999999999999 498877666665 999999999998 899999999999999999
Q ss_pred EEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-C
Q 022892 91 VTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT-M 169 (290)
Q Consensus 91 ~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~ 169 (290)
+|||||+.+++++.+++||+||||++++|++||+++|++++||+|||||+++++||++|+++|.+.||++++|||||+ +
T Consensus 95 ~te~~d~~~~~~l~~~vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t 174 (266)
T PRK13398 95 VTEVMDTRDVEEVADYADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRT 174 (266)
T ss_pred EEeeCChhhHHHHHHhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred C-CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 F-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~-~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
+ +|+++++||++++.||+ +++||++||||++ |+|++++.++++|+++||+|+|||+||||||
T Consensus 175 ~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~----------------G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd~ 238 (266)
T PRK13398 175 FETYTRNTLDLAAVAVIKELSHLPIIVDPSHAT----------------GRRELVIPMAKAAIAAGADGLMIEVHPEPEK 238 (266)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcc----------------cchhhHHHHHHHHHHcCCCEEEEeccCCccc
Confidence 4 68888999999999999 8999999999997 7889999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~~l 275 (290)
+++||++|++|++|++|++.+|++++++
T Consensus 239 a~~D~~~sl~p~~l~~l~~~i~~~~~~~ 266 (266)
T PRK13398 239 ALSDARQTLNFEEMKELVDELKPMAKAL 266 (266)
T ss_pred cCCchhhcCCHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999998764
|
|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-66 Score=474.45 Aligned_cols=237 Identities=34% Similarity=0.518 Sum_probs=223.5
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcE
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPI 90 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~ 90 (290)
+|.++ +++|||||++|+.++.+++|++|++.+.+ +.+.+++| |||+|++|+|++ ++||++|+++|+++||+|
T Consensus 21 ~g~~~-~~~IAGpc~ie~~~~~~~~A~~lk~~~~k-----~~r~~~~K-pRtsp~s~~g~g-~~gl~~l~~~~~~~Gl~~ 92 (260)
T TIGR01361 21 IGEGS-PIVIAGPCSVESEEQIMETARFVKEAGAK-----ILRGGAFK-PRTSPYSFQGLG-EEGLKLLRRAADEHGLPV 92 (260)
T ss_pred EcCCc-EEEEEeCCccCCHHHHHHHHHHHHHHHHH-----hccCceec-CCCCCccccccH-HHHHHHHHHHHHHhCCCE
Confidence 44444 78899999999999999999999998777 34455665 999999999999 899999999999999999
Q ss_pred EEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-C
Q 022892 91 VTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT-M 169 (290)
Q Consensus 91 ~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~ 169 (290)
+|||||+.+++++.+++|++||||++++|++||+++|+++|||+|||||++|++||++|+++|++.||++++|||||+ +
T Consensus 93 ~t~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~ 172 (260)
T TIGR01361 93 VTEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRT 172 (260)
T ss_pred EEeeCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999977 6
Q ss_pred C-CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 F-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~-~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
| +|+++++||++|+.||+ |++|||+||||+. |+|++++.++++|+++||+|+|||+||||||
T Consensus 173 y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~----------------G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~ 236 (260)
T TIGR01361 173 FEKATRNTLDLSAVPVLKKETHLPIIVDPSHAA----------------GRRDLVIPLAKAAIAAGADGLMIEVHPDPEK 236 (260)
T ss_pred CCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCC----------------CccchHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence 8 88899999999999999 8999999999995 8899999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHH
Q 022892 248 APVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
+++||++|++|++|++||+++|++
T Consensus 237 a~~D~~~sl~p~~l~~lv~~i~~~ 260 (260)
T TIGR01361 237 ALSDSKQQLTPEEFKRLVKELRAL 260 (260)
T ss_pred cCCcchhcCCHHHHHHHHHHHhhC
Confidence 999999999999999999999863
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=465.57 Aligned_cols=233 Identities=29% Similarity=0.449 Sum_probs=218.8
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV 94 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~ 94 (290)
+...+|||||++||+++.+++|+++++ +|+.+++..+|+ ||||||+|+|+| .+||++|+++|+++||+|+||+
T Consensus 14 ~~~~~iaGPC~vEs~e~~~~~a~~~~~----~g~~~~r~g~~k--pRts~~sf~G~G-~~gl~~L~~~~~~~Gl~~~Tev 86 (250)
T PRK13397 14 SKNNFIVGPCSIESYDHIRLAASSAKK----LGYNYFRGGAYK--PRTSAASFQGLG-LQGIRYLHEVCQEFGLLSVSEI 86 (250)
T ss_pred CCCcEEeccCccCCHHHHHHHHHHHHH----cCCCEEEecccC--CCCCCcccCCCC-HHHHHHHHHHHHHcCCCEEEee
Confidence 345899999999999999999999666 699999999998 999999999999 5899999999999999999999
Q ss_pred cCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CC-C
Q 022892 95 HETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-FG-Y 172 (290)
Q Consensus 95 ~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~~-y 172 (290)
||+.+++++.+++|++||||++++|++||+++|+++|||+||||+++|++||++|+++|.+.||++++|||||++ |+ +
T Consensus 87 ~d~~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~ 166 (250)
T PRK13397 87 MSERQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVE 166 (250)
T ss_pred CCHHHHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCc
Confidence 999999999999999999999999999999999999999999997779999999999999999999999997763 43 2
Q ss_pred CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCC
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 251 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D 251 (290)
+++.+||++|+.||+ |++||++|+||+. |+|++++.++++|+++||+|+|||+||+||++++|
T Consensus 167 ~~n~~dl~ai~~lk~~~~lPVivd~SHs~----------------G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD 230 (250)
T PRK13397 167 TRNMLDIMAVPIIQQKTDLPIIVDVSHST----------------GRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSD 230 (250)
T ss_pred cccccCHHHHHHHHHHhCCCeEECCCCCC----------------cccchHHHHHHHHHHhCCCEEEEEecCCcccccCc
Confidence 223899999999999 9999999999995 89999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHH
Q 022892 252 GPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 252 ~~~sl~p~~l~~lv~~ir~ 270 (290)
+++||+|++|++|++++|.
T Consensus 231 ~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 231 AAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred hhhhCCHHHHHHHHHHhcc
Confidence 9999999999999999873
|
|
| >COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-64 Score=446.18 Aligned_cols=263 Identities=56% Similarity=0.909 Sum_probs=255.6
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
.++.+.++.+|||||++|+.+..+++|.+|++++.+.|+..|++.+|+|++|||.++|+|+|+++||+.|.++.+++|++
T Consensus 11 ~~~n~~~~~LiaGpcviEs~d~a~~~a~~lk~~t~~lgi~~vfKsSfDKANRsSi~s~RGpGLeeglki~~~vK~efgv~ 90 (279)
T COG2877 11 VIGNDLPFVLIAGPCVIESRDLALEIAEHLKELTEKLGIPYVFKSSFDKANRSSIHSYRGPGLEEGLKILQEVKEEFGVP 90 (279)
T ss_pred EecCCCceEEEeccceeccHHHHHHHHHHHHHHHhccCCceEEecccccccccccccccCCCHHHHHHHHHHHHHHcCCc
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 90 IVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
++|++|.+.+++.+++.+|++||+++.++|++||.++|++|++|++|+|++.++++|++.++++.+.||++++||+||++
T Consensus 91 ilTDVHe~~q~~~vA~VvDilQiPAFLcRQTDLl~A~AkTg~~vNiKKgQFLaPwdMknvv~K~~~~gn~~v~lcERG~s 170 (279)
T COG2877 91 ILTDVHEPSQAQPVAEVVDVLQIPAFLCRQTDLLVAAAKTGAVVNVKKGQFLAPWDMKNIVEKFLETGNNKVILCERGAS 170 (279)
T ss_pred eeeccCChhhcchHHhhhhhhcchHHHhhhHHHHHHHHHhCCeEeeccccccChhHhhhHHHHHHhcCCCcEEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCC
Q 022892 170 FGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP 249 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~ 249 (290)
|+|++..+|+++++.||++++||+||.+|++|+||+. |++|+|+|++++.+++||+|.|++|++||.|++|++++
T Consensus 171 FGYnnLV~DMrsl~iM~~~~~PViFDaTHSvQ~pgg~-----g~~SGG~refv~~LaRAa~AvGvaGlF~EtHpdP~~A~ 245 (279)
T COG2877 171 FGYNNLVVDMRSLPIMKEFGAPVIFDATHSVQQPGGQ-----GGSSGGRREFVPTLARAAVAVGVAGLFIETHPDPDNAK 245 (279)
T ss_pred cCcchhHHHhhhhHHHHHcCCCeEEecccceeCCCCC-----CCCCCCcchhHHHHHHHHHHhccceEEEeccCCcccCC
Confidence 9999999999999999999999999999999999954 88899999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 250 VDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 250 ~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
+|++.++.+++|+.++..+.++......
T Consensus 246 sDgp~mlpL~~le~ll~~l~~~d~l~k~ 273 (279)
T COG2877 246 SDGPNMLPLDKLEALLEQLKAIDDLVKS 273 (279)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999887644
|
|
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-64 Score=454.14 Aligned_cols=243 Identities=33% Similarity=0.506 Sum_probs=233.1
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcE
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPI 90 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~ 90 (290)
++.++.+.|||||||+||.++..+.|+.+++ +|+++++-..|+ ||||||+|||+| +++|++|++.++++|+++
T Consensus 40 ~g~~~~~~viAGPCsvEs~E~i~~~A~~vk~----~Ga~~lRGgafK--PRTSPYsFQGlg-e~gL~~l~~a~~~~Gl~v 112 (286)
T COG2876 40 IGEGRALRVIAGPCSVESEEQVRETAESVKA----AGAKALRGGAFK--PRTSPYSFQGLG-EEGLKLLKRAADETGLPV 112 (286)
T ss_pred ecCCcceEEEecCcccCCHHHHHHHHHHHHH----cchhhccCCcCC--CCCCcccccccC-HHHHHHHHHHHHHcCCee
Confidence 4556668999999999999999999999998 499999999998 999999999999 899999999999999999
Q ss_pred EEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-
Q 022892 91 VTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM- 169 (290)
Q Consensus 91 ~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~- 169 (290)
+||++|+++++.+.+++|++|||+|+|+|++||+++++.+|||+||+|++.|++||+.|+|||.++||++++||+||..
T Consensus 113 vtEvm~~~~~e~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRt 192 (286)
T COG2876 113 VTEVMDVRDVEAAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRT 192 (286)
T ss_pred EEEecCHHHHHHHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred C-CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 F-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~-~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
| .|.++.+|+.+++.+|+ +|+||++|+||+. |+|+++..++.+|+|.||||+|||.|++|++
T Consensus 193 fe~~TRntLDi~aV~~~kq~THLPVivDpSH~~----------------Grr~lv~pla~AA~AaGAdglmiEVHp~P~~ 256 (286)
T COG2876 193 FEKATRNTLDISAVPILKQETHLPVIVDPSHAT----------------GRRDLVEPLAKAAIAAGADGLMIEVHPDPEK 256 (286)
T ss_pred ccccccceechHHHHHHHhhcCCCEEECCCCcc----------------cchhhHHHHHHHHHhccCCeeEEEecCCccc
Confidence 5 47778999999999999 9999999999996 8999999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
+++|++|||+|++|++|++.++.+..++|
T Consensus 257 AlsD~~Qql~~~~f~~l~~~~~~~~~~~~ 285 (286)
T COG2876 257 ALSDAKQQLTPEEFEELVKELRALADALG 285 (286)
T ss_pred ccCcccccCCHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999987765
|
|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-62 Score=467.54 Aligned_cols=242 Identities=32% Similarity=0.505 Sum_probs=225.4
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcE
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPI 90 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~ 90 (290)
+|.++ +++|||||++|+.++.+++|++|++ .|+.+++.++|+ ||||||+|+|++ .+|+++|+++|+++||+|
T Consensus 114 ~g~~~-~~~iaGpc~iE~~~~~~~~A~~lk~----~g~~~~r~~~~k--pRtsp~~f~g~~-~e~l~~L~~~~~~~Gl~~ 185 (360)
T PRK12595 114 IGDGN-QSFIFGPCSVESYEQVEAVAKALKA----KGLKLLRGGAFK--PRTSPYDFQGLG-VEGLKILKQVADEYGLAV 185 (360)
T ss_pred ecCCC-eeeEEecccccCHHHHHHHHHHHHH----cCCcEEEccccC--CCCCCccccCCC-HHHHHHHHHHHHHcCCCE
Confidence 44444 5668899999999999999999988 599999988887 999999999999 599999999999999999
Q ss_pred EEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec-CC
Q 022892 91 VTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG-TM 169 (290)
Q Consensus 91 ~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g-s~ 169 (290)
+|||||+.+++++.+++|++||||++++|++||+++|++++||+|||||++|++||+.|+++|.+.||++|+||||| ++
T Consensus 186 ~t~v~d~~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~ 265 (360)
T PRK12595 186 ISEIVNPADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRT 265 (360)
T ss_pred EEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCC
Confidence 99999999999999999999999999999999999999999999999997799999999999999999999999954 55
Q ss_pred CC-CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 FG-YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~~-y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
|+ ++.+++||++|+.||+ |++|||+|+||+. |+|++++.++++|+++||||+|||+||+|++
T Consensus 266 yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~----------------G~r~~~~~~a~aAva~GAdg~~iE~H~dp~~ 329 (360)
T PRK12595 266 YEKATRNTLDISAVPILKQETHLPVMVDVTHST----------------GRRDLLLPTAKAALAIGADGVMAEVHPDPAV 329 (360)
T ss_pred CCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCC----------------cchhhHHHHHHHHHHcCCCeEEEEecCCCCC
Confidence 65 3356799999999999 9999999999995 8899999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
+++||++||+|++|++|++.+|.+.+.+.
T Consensus 330 a~~D~~~sl~p~el~~l~~~i~~~~~~~~ 358 (360)
T PRK12595 330 ALSDSAQQMDIPEFDRFLDELKPLANKLN 358 (360)
T ss_pred CCCchhhhCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999988753
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=458.48 Aligned_cols=242 Identities=18% Similarity=0.198 Sum_probs=218.8
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcc----------cC---------CCCCh-hHHH
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSK----------SF---------RGPGM-VEGL 76 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~----------~~---------~g~~~-~~~l 76 (290)
+|||||+++ ||+|++++|++|++.|+++|+|+||||+|..+..+++. .| +.+.+ .+++
T Consensus 1 ~~iIAEig~--NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 78 (329)
T TIGR03569 1 TFIIAEAGV--NHNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDH 78 (329)
T ss_pred CEEEEEeCC--CccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHH
Confidence 589999999 99999999999999999999999999999743221111 12 11222 5899
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhhh-cceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~-~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
++|+++|+++||+|+|||||.++++++.++ ++++||||++++|+|||+++|++||||+|||||+ |++||+.||+++++
T Consensus 79 ~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGma-tl~Ei~~Av~~i~~ 157 (329)
T TIGR03569 79 RELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMA-TLEEIEAAVGVLRD 157 (329)
T ss_pred HHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCC-CHHHHHHHHHHHHH
Confidence 999999999999999999999999999996 9999999999999999999999999999999998 99999999999999
Q ss_pred cCCC--cEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc
Q 022892 156 AGNP--NVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV 232 (290)
Q Consensus 156 ~Gn~--~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~ 232 (290)
.||+ +++||||++.||++.+++||++|++||+ |++|||+ |||+. | ..++++|+++
T Consensus 158 ~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~-SdHt~----------------G-----~~~~~aAval 215 (329)
T TIGR03569 158 AGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGY-SDHTL----------------G-----IEAPIAAVAL 215 (329)
T ss_pred cCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEE-CCCCc----------------c-----HHHHHHHHHc
Confidence 9997 5999999999999999999999999999 9999998 99995 6 6789999999
Q ss_pred CCCEEEEeeeCCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCC--ccccccCC
Q 022892 233 GVDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKG--KQRMNIDL 285 (290)
Q Consensus 233 GA~G~~IEkH~t~dka~--~D~~~sl~p~~l~~lv~~ir~~~~~lg~--~~~~~~~~ 285 (290)
||+ ||||||||||++ +||++||+|+||++||+.+|+++.++|+ |++.+.|.
T Consensus 216 GA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~~k~~~~~E~ 270 (329)
T TIGR03569 216 GAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDGVKRPTPSEQ 270 (329)
T ss_pred CCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 998 999999999999 5999999999999999999999999998 55444443
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-61 Score=454.06 Aligned_cols=242 Identities=17% Similarity=0.145 Sum_probs=218.4
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCc-----c-----cCC---------CCCh-hHH
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSS-----K-----SFR---------GPGM-VEG 75 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~-----~-----~~~---------g~~~-~~~ 75 (290)
++|||||+|+ ||+|++++|++|++.|+++|+|+||||+|..+...++ + .|. ++.+ .++
T Consensus 1 ~~~iIAEiG~--NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~ 78 (327)
T TIGR03586 1 PPFIIAELSA--NHNGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEW 78 (327)
T ss_pred CCEEEEEECC--CCCChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHH
Confidence 5799999999 9999999999999999999999999999984321111 1 121 1112 467
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhhh-cceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~-~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
+++|+++|+++||+|+|||||.++++++.++ ++++||||++++|++||+++|+++|||+|||||+ |++||+.|+++|.
T Consensus 79 ~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~-t~~Ei~~Av~~i~ 157 (327)
T TIGR03586 79 HKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIA-TLEEIQEAVEACR 157 (327)
T ss_pred HHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCC-CHHHHHHHHHHHH
Confidence 7889999999999999999999999999996 9999999999999999999999999999999998 9999999999999
Q ss_pred HcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 022892 155 LAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 233 (290)
Q Consensus 155 ~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G 233 (290)
+.||++++||||+++||++.+++||++|++||+ |++|||| |||+. | ..++++|+++|
T Consensus 158 ~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~-SDHt~----------------G-----~~~~~aAva~G 215 (327)
T TIGR03586 158 EAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGL-SDHTL----------------G-----ILAPVAAVALG 215 (327)
T ss_pred HCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEe-eCCCC----------------c-----hHHHHHHHHcC
Confidence 999999999999999999889999999999999 9999999 89995 6 68899999999
Q ss_pred CCEEEEeeeCCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCC--ccccccC
Q 022892 234 VDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKG--KQRMNID 284 (290)
Q Consensus 234 A~G~~IEkH~t~dka~--~D~~~sl~p~~l~~lv~~ir~~~~~lg~--~~~~~~~ 284 (290)
|+ ||||||||||++ +||++||+|+||++||+.+|+++.++|+ |++.+.|
T Consensus 216 A~--iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~~~k~~~~~E 268 (327)
T TIGR03586 216 AC--VIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGEVNYELSEKE 268 (327)
T ss_pred CC--EEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 98 999999999999 6999999999999999999999999999 4444444
|
|
| >COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-59 Score=432.54 Aligned_cols=252 Identities=15% Similarity=0.154 Sum_probs=228.4
Q ss_pred hhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCccc----------CCC---------
Q 022892 9 NQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKS----------FRG--------- 69 (290)
Q Consensus 9 ~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~----------~~g--------- 69 (290)
+.|+.+++++||||+++ ||+|++++|++|+++|+++|||+||+|+|.....-++.+ |.+
T Consensus 7 r~i~~~~~~~iIAEig~--NHnG~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~ 84 (347)
T COG2089 7 RTIGKDKKPFIIAEIGA--NHNGDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEE 84 (347)
T ss_pred eeecCCCCcEEEeeecc--cccCcHHHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHH
Confidence 46788999999999998 999999999999999999999999999944323333221 111
Q ss_pred CCh-hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh-cceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHH
Q 022892 70 PGM-VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMV 147 (290)
Q Consensus 70 ~~~-~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~-~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~ 147 (290)
..+ .++...|+++|++.||.|+|||||..+++++.+. +++|||||++++|+|||+++|+++|||||||||+ +++|+.
T Consensus 85 ~~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma-~~~ei~ 163 (347)
T COG2089 85 AETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMA-TIEEIE 163 (347)
T ss_pred hcCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccc-cHHHHH
Confidence 111 3778889999999999999999999999999994 9999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHH
Q 022892 148 NSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIA 226 (290)
Q Consensus 148 ~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a 226 (290)
.|++++++.||++++|+||+++||.|.+++||++|+.|++ |+++||+ |||+. | ..++
T Consensus 164 ~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGl-SDHT~----------------g-----~~a~ 221 (347)
T COG2089 164 EAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGL-SDHTL----------------G-----ILAP 221 (347)
T ss_pred HHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCcccc-ccCcc----------------c-----hhHH
Confidence 9999999999999999999999888888999999999999 9999999 99996 6 6789
Q ss_pred HHHHHcCCCEEEEeeeCCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCC--ccccccCCCC
Q 022892 227 RTAIAVGVDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKG--KQRMNIDLTP 287 (290)
Q Consensus 227 ~aAva~GA~G~~IEkH~t~dka~--~D~~~sl~p~~l~~lv~~ir~~~~~lg~--~~~~~~~~~~ 287 (290)
.+|||+||+ |||||||+||++ +||++||+|++|++||+.+|++++++|+ |.+...|.+.
T Consensus 222 l~AvALGA~--viEKHFtldk~~~GpD~~fSldP~efk~mv~~ir~~~~alG~~~k~~~~~E~~~ 284 (347)
T COG2089 222 LAAVALGAS--VIEKHFTLDKSREGPDHAFSLDPDEFKEMVDAIRQVEKALGDGEKEILPSEEET 284 (347)
T ss_pred HHHHHhccc--ceeeeeeecCCCCCCCcceecCHHHHHHHHHHHHHHHHHhCCCccccChhHHHH
Confidence 999999996 999999999999 5999999999999999999999999999 8888887765
|
|
| >PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-57 Score=417.15 Aligned_cols=253 Identities=38% Similarity=0.593 Sum_probs=231.0
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCC
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDI 88 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi 88 (290)
+|.++|+++|||||||||.++.+++|++|++++++++ +..+++.+|+| ||||+++|+|++.+.+|++|.++++++|+
T Consensus 11 ~G~~~~l~viaGPCsies~e~~~~~A~~l~~~~~~~~~~i~~~~~~~~~K-pRts~~~f~G~g~d~~L~~l~~v~~~~gl 89 (270)
T PF00793_consen 11 IGKDKRLLVIAGPCSIESEEQALEYAERLKELGEKLGDRIPLRMRAYFEK-PRTSPYSFQGLGLDPGLDILSEVKEGLGL 89 (270)
T ss_dssp ETTTSSEEEEEEESB-S-HHHHHHHHHHHHHHHHHHTTTEEEEEEECSC--TTSSTTST-CSTHHHHHHHHHHHHHHHT-
T ss_pred ecCCCceEEEEECCccCCHHHHHHHHHHHHHhhhhcCcceEEEEEEEecC-CccCCCCCCCCCCCccchhHHHHHhhhCC
Confidence 5678899999999999999999999999999999998 77899999998 79999999999976779999999999999
Q ss_pred cEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC-CCcEEEEeec
Q 022892 89 PIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG-NPNVMVCERG 167 (290)
Q Consensus 89 ~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G-n~~i~L~~~g 167 (290)
|++||++|+.+++++.+++||++||||+|+|+++++++|++++||+||||++.++++|..|++++...| |+++.+||||
T Consensus 90 pv~tEv~~~~~~~~~~d~vd~lqIgAr~~~n~~ll~~as~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~~~~l~erg 169 (270)
T PF00793_consen 90 PVATEVLDPEQAEYVADLVDWLQIGARLMENQDLLEAASGTGKPVGFKNGTFAAIDEWLAAAEKHLFLGINSGNILCERG 169 (270)
T ss_dssp EEEEEESSGGGHHHHHTTESEEEE-GGGTTCHHHHHHHHCTSSEEEEEE-TTSHGGGHHHHHHHHHHTTECSSEEEEEEE
T ss_pred eeeEEecCcccHHHHHhcCcEEEECcchhcCHHHHHHhccCCCeEEeccCCccCHHHHHHHHhhhhhhcCCCCCeeeeee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred CCCCC--CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 168 TMFGY--NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 168 s~~~y--~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.+++| +...+|+++++.+++ .++||++|+||+++.++ +|++++++.+++++++.|++|+|||+|+.
T Consensus 170 lr~g~~~n~~~~di~~~~~~~~~~~lpVivD~SH~~~~~~-----------~~~q~~V~~~a~aaia~GidGlmiEsH~~ 238 (270)
T PF00793_consen 170 LRGGYGPNYNVLDIAAVPIMKKKTHLPVIVDPSHANSRKD-----------GGRQELVPPLARAAIAAGIDGLMIESHPD 238 (270)
T ss_dssp EEESSSSSSEEHHTTHHHHHHHHTSSEEEEEHHHHTTTCG-----------GGGHCGHHHHHHHHHHHTESEEEEEEESS
T ss_pred eeccccccccchhHHHHHHHHHhcCCCEEECchhhhcccc-----------CCchhhHHHHHHHHHhhcCCEEEEeecCC
Confidence 97554 556789999999999 78999999999996664 36778999999999999999999999999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 022892 245 PLNAPVDGPTQWPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 245 ~dka~~D~~~sl~p~~l~~lv~~ir~~~~~l 275 (290)
|+++++|.+++|+++++..++..++++.+.+
T Consensus 239 p~~a~~d~~~~l~~~~~~~~~~~~~~~~~~v 269 (270)
T PF00793_consen 239 PGKALSDGPQQLTYGQSITLLCILWEITEIV 269 (270)
T ss_dssp GGGTSSSGGGSEEGGGHHHHHHHHHHHHHHH
T ss_pred cccCCCCCccCCCcchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999887654
|
Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A .... |
| >PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-54 Score=391.10 Aligned_cols=214 Identities=18% Similarity=0.148 Sum_probs=171.0
Q ss_pred HHHHHHHcCCCEEeccccccCCCCCccc----C---------------CCCCh-hHHHHHHHHHHHhcCCcEEEeecCcc
Q 022892 39 IKSISTKVGLPLVFKSSFDKANRTSSKS----F---------------RGPGM-VEGLKILEKVKIAYDIPIVTDVHETV 98 (290)
Q Consensus 39 L~~~a~~~G~~~V~~~~~~k~~rts~~~----~---------------~g~~~-~~~l~~L~~~~~~~Gi~~~s~~~d~~ 98 (290)
||+.|+++|+|+||||.|..+...++.. | +.+.+ .+++++|+++|++.||.|++||||++
T Consensus 1 lI~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~stpfd~~ 80 (241)
T PF03102_consen 1 LIDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFSTPFDEE 80 (241)
T ss_dssp HHHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEEE-SHH
T ss_pred CHHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEECCCCHH
Confidence 7899999999999999998532222211 1 11112 47899999999999999999999999
Q ss_pred cHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC
Q 022892 99 QCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~ 177 (290)
+++++.+ .++++||+|++++|++||+++|++||||||||||+ |++|+..||+.+++.||.+++|+||+++||.+.+++
T Consensus 81 s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~s-tl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~ 159 (241)
T PF03102_consen 81 SVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMS-TLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDV 159 (241)
T ss_dssp HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT---HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG-
T ss_pred HHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCC-CHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHc
Confidence 9999988 59999999999999999999999999999999999 999999999999999999999999999988888899
Q ss_pred CchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCC--CCCCC
Q 022892 178 DPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP--VDGPT 254 (290)
Q Consensus 178 dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~--~D~~~ 254 (290)
||+.|++||+ |++|||| |||+. | ..++.+|+++||+ |||||||+||++ +||.+
T Consensus 160 NL~~i~~L~~~f~~~vG~-SDHt~----------------g-----~~~~~~AvalGA~--vIEKHfTldr~~~g~Dh~~ 215 (241)
T PF03102_consen 160 NLRVIPTLKERFGVPVGY-SDHTD----------------G-----IEAPIAAVALGAR--VIEKHFTLDRNLKGPDHKF 215 (241)
T ss_dssp -TTHHHHHHHHSTSEEEE-EE-SS----------------S-----SHHHHHHHHTT-S--EEEEEB-S-TTSCSTTGCC
T ss_pred ChHHHHHHHHhcCCCEEe-CCCCC----------------C-----cHHHHHHHHcCCe--EEEEEEECCCCCCCCChhh
Confidence 9999999999 9999999 99996 5 6788999999997 999999999998 49999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCC
Q 022892 255 QWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 255 sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
|++|+||++||+.+|+++.++|+
T Consensus 216 Sl~p~el~~lv~~ir~~~~alG~ 238 (241)
T PF03102_consen 216 SLEPDELKQLVRDIREVEKALGS 238 (241)
T ss_dssp CB-HHHHHHHHHHHHHHHHHCSH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999997
|
It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A. |
| >PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=341.15 Aligned_cols=223 Identities=20% Similarity=0.276 Sum_probs=193.6
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCCC----------hhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGPG----------MVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~~----------~~~~l~~L 79 (290)
|.+++++||||||||||.+++++||++|++++++.. .-.|+|.+|+| |||+ ++|+|++ +++||+++
T Consensus 49 g~d~rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~K-PRTs-~g~kGl~~DP~ldgs~~i~~GL~~~ 126 (349)
T PRK09261 49 GKDDRLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEK-PRTT-VGWKGLINDPDLDGSFDINDGLRIA 126 (349)
T ss_pred CCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEecccc-CCCC-CCCcCCCcCcCccccccHHHHHHHH
Confidence 368899999999999999999999999999988765 33699999998 9999 9999983 57999999
Q ss_pred HHH---HHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH------
Q 022892 80 EKV---KIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSA------ 150 (290)
Q Consensus 80 ~~~---~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Av------ 150 (290)
+++ ..++|+|++||++|+..++|+.+++||++||||++.|+.+++.++++++||+||||+++++++|.+|+
T Consensus 127 R~ll~~~~e~GlpvatE~ld~~~~~y~~dlvs~~~IGARt~esq~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai~aa~~~ 206 (349)
T PRK09261 127 RKLLLDINELGLPAATEFLDPITPQYIADLISWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNIKVAIDAIIAASAP 206 (349)
T ss_pred HHHHHHHHHhCCCeEEEecccccHHHHHhhcceeeeccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHhHHHHHhCC
Confidence 999 59999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------HHHHHcCCCcEEEEeecCC-C-CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccC
Q 022892 151 ------------EKVRLAGNPNVMVCERGTM-F-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 151 ------------e~i~~~Gn~~i~L~~~gs~-~-~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
+++.+.||++++||+||.. + +|..++++....+..+. .+.||++||||++
T Consensus 207 H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~~pNy~~~~i~~~~~~l~k~~l~~~v~VD~SH~n--------------- 271 (349)
T PRK09261 207 HHFLGITKDGRSAIVSTTGNPDCHVILRGGNKGPNYDAESVAEAKERLEKAGLPPRIMIDCSHAN--------------- 271 (349)
T ss_pred ceeeecCCCCcEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCCCEEEECCCcc---------------
Confidence 6788999999999999993 4 58778899777766666 7889999999997
Q ss_pred CCCcccHH-----HHHHHHHHcCCC---EEEEeeeCCCCCCCCCCCCCCCh
Q 022892 216 GGLRELIP-----CIARTAIAVGVD---GVFMEVHDDPLNAPVDGPTQWPL 258 (290)
Q Consensus 216 ~g~~~~~~-----~~a~aAva~GA~---G~~IEkH~t~dka~~D~~~sl~p 258 (290)
+.+++.. ....++++.|++ |+|||+|+ .|++|++++
T Consensus 272 -s~k~~~~Q~~V~~~v~~qi~~G~~~I~GvMiES~l------~~G~Q~~~~ 315 (349)
T PRK09261 272 -SGKDHKRQPEVARDVAAQIAAGNKAIIGVMIESHL------VEGNQDLPP 315 (349)
T ss_pred -cCcchhhhHHHHHHHHHHHHcCCccceEEEEEEec------CcCCcCCCC
Confidence 2222222 223466888988 99999996 566666554
|
|
| >TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=320.23 Aligned_cols=223 Identities=21% Similarity=0.282 Sum_probs=187.5
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCC----------ChhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGP----------GMVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~----------~~~~~l~~L 79 (290)
|.+++++||+|||||||.+++++||++|++++++.. ..+|+|.+|+| |||+++ |+|+ .+++||+++
T Consensus 44 g~d~rllvIvGPCSIhd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eK-PRTt~G-WKGli~DP~ld~sf~i~~GL~~~ 121 (344)
T TIGR00034 44 GKDDRLLVVIGPCSIHDPEAAIEYATRLKALREELKDDLEIVMRVYFEK-PRTTVG-WKGLINDPDLNGSFRINHGLRIA 121 (344)
T ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhcceEEEEEecccc-CCCccc-cccccCCCCcCCCCCHHHHHHHH
Confidence 468899999999999999999999999999988765 44799999998 999943 3321 247999999
Q ss_pred HHHH---HhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH---H--
Q 022892 80 EKVK---IAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSA---E-- 151 (290)
Q Consensus 80 ~~~~---~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Av---e-- 151 (290)
+++. .++|+|++||++|+...+|+.++++|.+||||++.|+.+.+.++++++||+||||+++++++|.+|+ +
T Consensus 122 R~ll~~i~~~GlPvatE~ld~~~~~y~~Dlisw~aIGARt~esq~hRelaSgl~~PVgfKngt~g~i~~al~Ai~aA~~~ 201 (344)
T TIGR00034 122 RKLLLDLVNLGLPIAGEFLDMISPQYLADLFSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNLQVAIDAIRAAAAP 201 (344)
T ss_pred HHHHHHHHHhCCCeEEEecCcCcHHHHHHHHhhccccCccccCHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHhCC
Confidence 9998 9999999999999999999999999999999999998665555689999999999999999999975 3
Q ss_pred -------------HHHHcCCCcEEEEeecCCC-CCCCCCCCchhHHHHHh-cCCC--EEEeCCCCCCCCCCCccCCCCcc
Q 022892 152 -------------KVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWMRE-ANCP--VVADVTHSLQQPAGKKLDGGGVA 214 (290)
Q Consensus 152 -------------~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i~~lk~-~~~p--V~~D~sHs~~~~~~~~~~~~~~~ 214 (290)
++.+.||++++||+||.+. +|.. .|+...+.+.+ .++| |++||||++
T Consensus 202 H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~pNy~~--~di~~~~~~l~~~~lp~~vmVD~SH~n-------------- 265 (344)
T TIGR00034 202 HYFLSVTKDGQMAIVQTSGNPDGHIILRGGKKPNYSA--ADVAAAKKQLEKAGLPPHLMIDFSHGN-------------- 265 (344)
T ss_pred ceeeecCCCCcEEEEECCCCCCEEEEecCCCCCCCCH--HHHHHHHHHHHHcCCCCeEEEeCCCcc--------------
Confidence 3678999999999999863 4554 46677777666 8999 999999997
Q ss_pred CCCCcccHHHHHHH-----HHHcCCC---EEEEeeeCCCCCCCCCCCC
Q 022892 215 SGGLRELIPCIART-----AIAVGVD---GVFMEVHDDPLNAPVDGPT 254 (290)
Q Consensus 215 ~~g~~~~~~~~a~a-----Ava~GA~---G~~IEkH~t~dka~~D~~~ 254 (290)
+.+++...++++ +++.|++ |+|||+|+.+.++..+..+
T Consensus 266 --s~k~~~~q~~va~~v~~qi~~G~~~I~GvMiES~l~~G~Q~~~~~~ 311 (344)
T TIGR00034 266 --SNKDHRRQPDVAEDVCEQIANGSKAIIGVMIESNLVEGNQSIPGGQ 311 (344)
T ss_pred --cccchhhhHHHHHHHHHHHHcCCccceEEEEEecCCcCCCCCCCCC
Confidence 345554445554 5788886 9999999999998864433
|
|
| >PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=319.31 Aligned_cols=224 Identities=21% Similarity=0.290 Sum_probs=187.0
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCCC----------hhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGPG----------MVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~~----------~~~~l~~L 79 (290)
|.+++++||+|||||||.+++++||++|++++++.. ...|+|.+|+| |||+ ++|+|+. +++||+++
T Consensus 50 g~d~rllvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eK-PRT~-~gwkGli~DP~ldgs~~i~~GL~~~ 127 (353)
T PRK12755 50 GRDDRLLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEK-PRTT-VGWKGLINDPHLDGSFDIEEGLRIA 127 (353)
T ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEecccc-CCCC-cCCcCCCCCccccccccHHHHHHHH
Confidence 468899999999999999999999999999988765 44699999998 9999 6899873 47999998
Q ss_pred HHH---HHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH-----
Q 022892 80 EKV---KIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE----- 151 (290)
Q Consensus 80 ~~~---~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave----- 151 (290)
+++ ..++|+|++||++|+..++|+.++++|++||||++.|+.+++.++++++||+||||+++++++|.+|+.
T Consensus 128 R~ll~~~~e~Glp~atE~ld~~~~~y~~Dlvs~~aIGARt~esq~hre~aSgl~~PVgfKngt~g~i~~al~Ai~aa~~~ 207 (353)
T PRK12755 128 RKLLLDLVELGLPLATEALDPISPQYLGDLISWGAIGARTTESQTHREMASGLSMPVGFKNGTDGSLKVAINAIRAAAQP 207 (353)
T ss_pred HHHHHHHHHhCCCEEEEecCcccHHHHHhhhhheeeccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHHHHHHHhCC
Confidence 877 799999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred --------H-----HHHcCCCcEEEEeecCC-C-CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccC
Q 022892 152 --------K-----VRLAGNPNVMVCERGTM-F-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 152 --------~-----i~~~Gn~~i~L~~~gs~-~-~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
. +.+.||++.|||+||.. + +|..++++.......+. ...||++||||+++.. ..
T Consensus 208 H~fl~~~~~G~~~iv~t~GN~~~hliLRGg~~~pNy~~~~i~~a~~~l~k~~l~~~vmVD~SH~Ns~K----------~~ 277 (353)
T PRK12755 208 HRFLGINQEGQVALLETRGNPDGHVILRGGKKGPNYDAASVAACEAQLEKAGLRPRLMIDCSHANSGK----------DY 277 (353)
T ss_pred CeeeeeCCCCcEEEEECCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCCcEEecCCcccccc----------ch
Confidence 2 78899999999999994 3 58778888655554444 5678999999997211 11
Q ss_pred CCCcccHHHHHHHHHHcCC---CEEEEeeeCCCCCC
Q 022892 216 GGLRELIPCIARTAIAVGV---DGVFMEVHDDPLNA 248 (290)
Q Consensus 216 ~g~~~~~~~~a~aAva~GA---~G~~IEkH~t~dka 248 (290)
..+.. +.....+.++.|+ +|+|||+|+...+.
T Consensus 278 ~~Q~~-V~~~v~~qi~~G~~~I~GvMiES~l~~G~Q 312 (353)
T PRK12755 278 RRQPA-VAEDVVAQIAAGNRSIIGVMIESHLEEGNQ 312 (353)
T ss_pred hhhHH-HHHHHHHHHHcCCCceEEEEEEEeccccCc
Confidence 11111 2223345677887 99999999865554
|
|
| >PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=295.13 Aligned_cols=221 Identities=16% Similarity=0.207 Sum_probs=187.7
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCCC----------hhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGPG----------MVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~~----------~~~~l~~L 79 (290)
|.+++++||+|||||||.+++++||++|++++++.. +.+|+|.+|+| |||+++ |+|+. +++||+++
T Consensus 49 g~d~rllvIvGPCSIhd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eK-PRTs~g-wkGl~~DP~ldgs~~i~~GL~i~ 126 (356)
T PRK12822 49 GKDPRLLVIIGPCSIHDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEK-PRTRKG-WKGLIFDPDLDGSNDIEKGLRLA 126 (356)
T ss_pred CCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHHhhcccEEEEEEecccc-CCCCCC-ccccccCCCCCCCccHHHHHHHH
Confidence 468999999999999999999999999999988875 56799999998 999986 99872 36999999
Q ss_pred HHH---HHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH-----
Q 022892 80 EKV---KIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE----- 151 (290)
Q Consensus 80 ~~~---~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave----- 151 (290)
+++ ..++|+|++||++|+...+|+.|+++|.+||||++.|+.+++.++++++||+||||++++++...+|+.
T Consensus 127 R~ll~~~~~~GlPvatE~ld~~~~qy~~Dlisw~aIGARt~esq~hrelaSgls~PVgfKngt~g~i~~AidAi~aa~~p 206 (356)
T PRK12822 127 RQLLLSINTLGLATATEFLDTTSFPYIADLICWGAIGARTTESQVHRQLASALPCPVGFKNGTDGNIRIAIDAILAARSP 206 (356)
T ss_pred HHHHHHHHHhCCCEEEeecccccHHHHHHHHHhhhhccchhcCHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHcCC
Confidence 988 799999999999999999999999999999999999999988899999999999999999999999986
Q ss_pred -------------HHHHcCCCcEEEEeecCC-CCCCCCCCCchhHHHHHhcCCC--EEEeCCCCCCCCCCCccCCCCccC
Q 022892 152 -------------KVRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEWMREANCP--VVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 152 -------------~i~~~Gn~~i~L~~~gs~-~~y~~~~~dL~~i~~lk~~~~p--V~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
++.+.||++.|+++||.+ ++|..++++ .+...|++.+++ |++||||+|.
T Consensus 207 H~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~-~a~~~l~~~~l~~~vmVDcSH~NS-------------- 271 (356)
T PRK12822 207 HLVTVPGLTGCISTLLSDGNPHGHIILRGGREPNYGLSDVT-KASKLLHDEGLNHRLIIDCSHGNS-------------- 271 (356)
T ss_pred CeEEecCCCCcEEEEEcCCCCCceEEEeCCCCCCCCHHHHH-HHHHHHHHCCCCCcEEEECCCccC--------------
Confidence 367889999999999986 457766676 567778776663 8999999972
Q ss_pred CCCcccHHHHHHHH---HHcC---CCEEEEeeeCCCCCCC
Q 022892 216 GGLRELIPCIARTA---IAVG---VDGVFMEVHDDPLNAP 249 (290)
Q Consensus 216 ~g~~~~~~~~a~aA---va~G---A~G~~IEkH~t~dka~ 249 (290)
+..+..++.++... ++.| +.|+|||+|+...+..
T Consensus 272 ~K~~~~Q~~V~~~v~~q~~~g~~~I~GvMiES~L~~G~Q~ 311 (356)
T PRK12822 272 QKVAKNQISVARELCDQLKEGEGAIAGVMVESFLQGGSQK 311 (356)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCeEEEEEEeecccccCCC
Confidence 12333333333321 3344 8999999999887764
|
|
| >PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=283.63 Aligned_cols=221 Identities=17% Similarity=0.236 Sum_probs=184.5
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCC----------ChhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGP----------GMVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~----------~~~~~l~~L 79 (290)
|.+++++||+|||||||.+++++||++|++++++.. ..+|+|.+|+| |||+++ |+|+ .+++||+++
T Consensus 48 g~d~rllvIvGPCSIhd~~~a~eyA~rL~~l~~~~~d~l~ivmR~y~eK-PRTt~g-WKGli~DP~ldgsf~i~~GL~~~ 125 (348)
T PRK12756 48 GEDPRLLVIIGPCSIHDTDAALDYATRLAALREQYQDRLEIVMRTYFEK-PRTVVG-WKGLISDPDLDGSYRVNHGLELA 125 (348)
T ss_pred CCCCceEEEecCCcCCCHHHHHHHHHHHHHHHHHhhccEEEEEEecccc-CCCCcc-cccccCCCCCCCCccHHHHHHHH
Confidence 468899999999999999999999999999988875 55799999998 999987 5543 246889987
Q ss_pred HHHH---HhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH----
Q 022892 80 EKVK---IAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK---- 152 (290)
Q Consensus 80 ~~~~---~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~---- 152 (290)
+++. .++|+|++||++|+...+|+.|+++|.+||||++.|+.+++.++++++||+||||++++++.+.+|+..
T Consensus 126 R~ll~~i~~~GlP~atE~ld~~~~qY~~DliSwgaIGARt~esq~hre~ASgls~PVgfKN~t~g~i~~aidAi~aa~~~ 205 (348)
T PRK12756 126 RKLLLQINELGLPTATEFLDMVTGQYIADLISWGAIGARTTESQIHREMASALSCPVGFKNGTDGNTRIAIDAIRAARAS 205 (348)
T ss_pred HHHHHHHHHcCCceeehhcccccHHHHHHHHhhhhhccccccCHHHHHHHhcCCCceEecCCCCCCHHHHHHHHHHHhCC
Confidence 7777 899999999999999999999999999999999999998888999999999999999999999999863
Q ss_pred --------------HHHcCCCcEEEEeecCC-CCCCCCCCCchhHHHHHhcCCC--EEEeCCCCCCCCCCCccCCCCccC
Q 022892 153 --------------VRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEWMREANCP--VVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 153 --------------i~~~Gn~~i~L~~~gs~-~~y~~~~~dL~~i~~lk~~~~p--V~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
+.+.||++.|+++||.+ ++|..+++. .+...|++.++| |++||||+|.
T Consensus 206 H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~-~a~~~l~~~~l~~~imVDcSH~NS-------------- 270 (348)
T PRK12756 206 HMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKKPNYHAEDIA-AACDTLREFDLPEHLVVDFSHGNC-------------- 270 (348)
T ss_pred CeeEeeCCCCcEEEEEcCCCCCeEEEeeCCCCCCCCHHHHH-HHHHHHHHCCCCCcEEEECCCccc--------------
Confidence 67889999999999986 467776676 577778776663 8999999972
Q ss_pred CCCcccHHHHHHHH---HHc---CCCEEEEeeeCCCCCCC
Q 022892 216 GGLRELIPCIARTA---IAV---GVDGVFMEVHDDPLNAP 249 (290)
Q Consensus 216 ~g~~~~~~~~a~aA---va~---GA~G~~IEkH~t~dka~ 249 (290)
+..+..++.++... ++. .+.|+|||+|+...+..
T Consensus 271 ~K~~~~Q~~V~~~v~~qi~~g~~~I~GvMiES~L~~G~Q~ 310 (348)
T PRK12756 271 QKQHRRQLDVAEDICQQIRNGSTAIAGIMAESFLREGTQK 310 (348)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCeEEEEEEeecccccCCC
Confidence 23333333333321 233 48899999999877764
|
|
| >COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=259.23 Aligned_cols=220 Identities=23% Similarity=0.323 Sum_probs=181.2
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCC----------ChhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGP----------GMVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~----------~~~~~l~~L 79 (290)
|.|+|++||.|||||||.+.++|||+||+.+++++- ..+|||.||+| |||+.+ |+|+ .+.+||+..
T Consensus 49 G~DdRLlvViGPCSiHD~~AAleYA~RL~~l~e~~~d~L~iVMRvYfeK-PRTtVG-WKGLInDP~ldgsf~i~~GL~~a 126 (351)
T COG0722 49 GEDDRLLVVIGPCSIHDPEAALEYARRLKALREELKDRLEIVMRVYFEK-PRTTVG-WKGLINDPDLDGSFDINKGLRIA 126 (351)
T ss_pred CCCCcEEEEEeCCccCCHHHHHHHHHHHHHHHHHhhCceEEEEEEeecC-Cccccc-ccccccCCCCCCCccHHHHHHHH
Confidence 478999999999999999999999999999999987 66899999998 999976 7764 346888876
Q ss_pred HHHH---HhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH-----
Q 022892 80 EKVK---IAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE----- 151 (290)
Q Consensus 80 ~~~~---~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave----- 151 (290)
+++. .++|+|..||.+|+.+.+|++++++|..||+|+..+.-..+.++.+++||.||||++|++.-+.+|+.
T Consensus 127 R~Ll~~v~e~Glp~AtE~Ld~ispqy~aDLiSwgAIGARTtESQ~HRe~ASGLs~PvGFKNgTdGnl~vAidAi~AA~~~ 206 (351)
T COG0722 127 RKLLLDVNELGLPTATEFLDPISPQYLADLISWGAIGARTTESQIHRELASGLSCPVGFKNGTDGNLKVAIDAIRAAAHP 206 (351)
T ss_pred HHHHHHHHhcCCchhHHHhccCcHHHHHHHHHHhhccccchhhHHHHHHhhccCCCccccCCCCccHHHHHHHHHHhhCC
Confidence 6655 89999999999999999999999999999999997655445577899999999999999999999876
Q ss_pred -------------HHHHcCCCcEEEEeecCC--CCCCCCCCCchhHHHHHhcCCC--EEEeCCCCCCCCCCCccCCCCcc
Q 022892 152 -------------KVRLAGNPNVMVCERGTM--FGYNDLIVDPRNLEWMREANCP--VVADVTHSLQQPAGKKLDGGGVA 214 (290)
Q Consensus 152 -------------~i~~~Gn~~i~L~~~gs~--~~y~~~~~dL~~i~~lk~~~~p--V~~D~sHs~~~~~~~~~~~~~~~ 214 (290)
++.+.||++.|++.||.. ++|...++. .+...|++++++ +++|+||.|+
T Consensus 207 H~Fl~~~k~G~~aiv~T~GNp~~HvILRGG~~~PNYda~~v~-~~~~~l~~~gl~~~lmID~SH~NS------------- 272 (351)
T COG0722 207 HHFLSVTKDGQVAIVETSGNPDGHVILRGGKKGPNYDAASVA-AACEQLEKAGLPPRLMIDCSHANS------------- 272 (351)
T ss_pred ceeeecCCCCceEEEEccCCCCceEEecCCCCCCCCCHHHHH-HHHHHHHHcCCCCeEEEeccCCcc-------------
Confidence 356789999999999994 678776665 577788888875 8899999972
Q ss_pred CCCCcccHHHHHHHH---HHcC---CCEEEEeeeCCCCCC
Q 022892 215 SGGLRELIPCIARTA---IAVG---VDGVFMEVHDDPLNA 248 (290)
Q Consensus 215 ~~g~~~~~~~~a~aA---va~G---A~G~~IEkH~t~dka 248 (290)
+.++..++.+++.. ++.| +.|+|||+|+...+.
T Consensus 273 -~K~~~~Q~~V~~~v~~Qi~~G~~~I~GvMiES~L~eG~Q 311 (351)
T COG0722 273 -GKDYRRQPKVARDVCQQIAAGERAIRGVMIESHLVEGRQ 311 (351)
T ss_pred -ccChhhhHHHHHHHHHHHhcCCceeEEEEehhhhhhcCc
Confidence 12233334444432 3445 789999999976664
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0031 Score=59.13 Aligned_cols=226 Identities=17% Similarity=0.142 Sum_probs=135.0
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC-Cc--------c------cCCCCChhH
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT-SS--------K------SFRGPGMVE 74 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt-s~--------~------~~~g~~~~~ 74 (290)
.+...+|+.+=|||... | .+.++++.+ .|+.+|.-.++..+||. .+ . .|...|++.
T Consensus 8 G~~~~nPv~~aag~~~~-~----~~~~~~~~~----~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~ 78 (301)
T PRK07259 8 GLKLKNPVMPASGTFGF-G----GEYARFYDL----NGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDA 78 (301)
T ss_pred CEECCCCcEECCcCCCC-C----HHHHHHhhh----cCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHH
Confidence 56677887666776642 2 255555544 58877666666544553 11 1 122234445
Q ss_pred HHHHHHHHHHhcCCcEEEeecCc--ccHHH----Hhhh--cceecc----------cCCccCCHHHH----HHHHh-cCC
Q 022892 75 GLKILEKVKIAYDIPIVTDVHET--VQCEE----VGKV--ADIIQI----------PAFLCRQTDLL----VAAAK-TGK 131 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d~--~~~~~----l~~~--~d~~kI----------gs~~~~n~~lL----~~~a~-~~~ 131 (290)
.++.+.+..++.++|++.++.-. ++... +.+. +|++-| |.....+.+++ +++-+ ..+
T Consensus 79 ~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~ 158 (301)
T PRK07259 79 FIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKV 158 (301)
T ss_pred HHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCC
Confidence 66667776677899999998643 32222 2232 677766 33444555544 44433 389
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----------------CC---CCCCCCchhHHHHHh-cCCC
Q 022892 132 IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----------------GY---NDLIVDPRNLEWMRE-ANCP 191 (290)
Q Consensus 132 PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----------------~y---~~~~~dL~~i~~lk~-~~~p 191 (290)
||.+|-+. +.+++.+.++.+.+.|-+-+++..+...+ ++ ......++.+..+++ .++|
T Consensus 159 pv~vKl~~--~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ip 236 (301)
T PRK07259 159 PVIVKLTP--NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIP 236 (301)
T ss_pred CEEEEcCC--CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCC
Confidence 99999875 46788888888888887667665432110 01 001235677777877 7899
Q ss_pred EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 192 V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
|+....=. . ..-+...++.||++++|=+-+ .. +|.-++++.+.+...
T Consensus 237 vi~~GGI~-----------------~-----~~da~~~l~aGAd~V~igr~l----------l~-~P~~~~~i~~~l~~~ 283 (301)
T PRK07259 237 IIGMGGIS-----------------S-----AEDAIEFIMAGASAVQVGTAN----------FY-DPYAFPKIIEGLEAY 283 (301)
T ss_pred EEEECCCC-----------------C-----HHHHHHHHHcCCCceeEcHHH----------hc-CcHHHHHHHHHHHHH
Confidence 98732211 1 344556677899987775543 12 577788888777665
Q ss_pred HHHhCCcc
Q 022892 272 AKVSKGKQ 279 (290)
Q Consensus 272 ~~~lg~~~ 279 (290)
-...|.++
T Consensus 284 ~~~~g~~~ 291 (301)
T PRK07259 284 LDKYGIKS 291 (301)
T ss_pred HHHcCCCC
Confidence 55555433
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0038 Score=58.25 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=130.6
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC-CCEEeccccccCCCC---Ccc------------cCCCCChh
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRT---SSK------------SFRGPGMV 73 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G-~~~V~~~~~~k~~rt---s~~------------~~~g~~~~ 73 (290)
.+...+|+.+=||+.. |.+. .+++.+ .| +.+|.-.+...+|+. .|. .+...+.+
T Consensus 6 G~~~~nP~~~aag~~~--~~~~----~~~~~~----~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~ 75 (296)
T cd04740 6 GLRLKNPVILASGTFG--FGEE----LSRVAD----LGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVE 75 (296)
T ss_pred CEEcCCCCEECCCCCC--CHHH----HHHHHh----cCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHH
Confidence 4556778766667764 3332 223333 24 777665555544543 111 12223445
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHH------HHhh-hcceecc----------cCCccCCHHH----HHHHHhc-CC
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCE------EVGK-VADIIQI----------PAFLCRQTDL----LVAAAKT-GK 131 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~------~l~~-~~d~~kI----------gs~~~~n~~l----L~~~a~~-~~ 131 (290)
..++.+++..++.+.|++..++-...-+ .+.+ .+|++-| |+....+..+ ++++-+. ++
T Consensus 76 ~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~ 155 (296)
T cd04740 76 AFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV 155 (296)
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC
Confidence 6677777776778899999986542212 2223 2677766 3334455554 4444443 89
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-------------------CCCCCCCCchhHHHHHh-cCCC
Q 022892 132 IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-------------------GYNDLIVDPRNLEWMRE-ANCP 191 (290)
Q Consensus 132 PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-------------------~y~~~~~dL~~i~~lk~-~~~p 191 (290)
||.+|-+. +.+|+.+.++.+...|-+-+.+..+...+ +.......++.+..+++ .++|
T Consensus 156 Pv~vKl~~--~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ip 233 (296)
T cd04740 156 PVIVKLTP--NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIP 233 (296)
T ss_pred CEEEEeCC--CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCC
Confidence 99999764 46678887887888887666665432110 01111234567777777 7899
Q ss_pred EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 192 V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
|+....-. . ..-+..++.+||++++|=+-+. .+|.-+.++.+.+.+.
T Consensus 234 ii~~GGI~-----------------~-----~~da~~~l~~GAd~V~igra~l-----------~~p~~~~~i~~~l~~~ 280 (296)
T cd04740 234 IIGVGGIA-----------------S-----GEDALEFLMAGASAVQVGTANF-----------VDPEAFKEIIEGLEAY 280 (296)
T ss_pred EEEECCCC-----------------C-----HHHHHHHHHcCCCEEEEchhhh-----------cChHHHHHHHHHHHHH
Confidence 98732211 1 3445667789999888765541 2577788888777765
Q ss_pred HHHhCCcc
Q 022892 272 AKVSKGKQ 279 (290)
Q Consensus 272 ~~~lg~~~ 279 (290)
-...|-++
T Consensus 281 ~~~~g~~~ 288 (296)
T cd04740 281 LDEEGIKS 288 (296)
T ss_pred HHHcCCCC
Confidence 55555433
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.003 Score=56.59 Aligned_cols=173 Identities=15% Similarity=0.145 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
...++|+.+.+ .|++.+.....+. .+.+.+ ..+..+++.++..++|+.. -+.++++++.+.+ .+
T Consensus 30 dp~~~a~~~~~----~g~d~l~v~dl~~-------~~~~~~--~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Ga 96 (234)
T cd04732 30 DPVEVAKKWEE----AGAKWLHVVDLDG-------AKGGEP--VNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGV 96 (234)
T ss_pred CHHHHHHHHHH----cCCCEEEEECCCc-------cccCCC--CCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCC
Confidence 45788888887 5988776653331 122222 3467788888888899888 7788888887766 69
Q ss_pred ceecccCCccCCHHHHHHHHh-cCC-eEEEeCC--------------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAK-TGK-IINIKKG--------------QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG 171 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~-~~~-PVilstG--------------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~ 171 (290)
|.+-||+..+.|.++++++.+ .+. +|+++-. ...++.|+ ++.+...|-..+++.++...-.
T Consensus 97 d~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ga~~iii~~~~~~g~ 173 (234)
T cd04732 97 SRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEEL---AKRFEELGVKAIIYTDISRDGT 173 (234)
T ss_pred CEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHH---HHHHHHcCCCEEEEEeecCCCc
Confidence 999999999999998888765 455 5666521 12234443 4455667777777766543211
Q ss_pred CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 172 YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+. -.|+..+..+++ .++||++.. |.+. ..-...+...||+|+|+=+-+
T Consensus 174 ~~--g~~~~~i~~i~~~~~ipvi~~G--------------------Gi~~--~~di~~~~~~Ga~gv~vg~~~ 222 (234)
T cd04732 174 LS--GPNFELYKELAAATGIPVIASG--------------------GVSS--LDDIKALKELGVAGVIVGKAL 222 (234)
T ss_pred cC--CCCHHHHHHHHHhcCCCEEEec--------------------CCCC--HHHHHHHHHCCCCEEEEeHHH
Confidence 21 257788888888 789998732 2111 222334456799999997766
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0058 Score=57.22 Aligned_cols=227 Identities=16% Similarity=0.163 Sum_probs=127.5
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCC---c------c------cCCCCChhH
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTS---S------K------SFRGPGMVE 74 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts---~------~------~~~g~~~~~ 74 (290)
.+...+|+++=+|+... + -+..+++.+ .|+.+|.-.+...+||.. | . .+...+.+.
T Consensus 7 g~~l~npi~~aag~~~~-~----~~~~~~~~~----~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~ 77 (300)
T TIGR01037 7 GIRFKNPLILASGIMGS-G----VESLRRIDR----SGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEA 77 (300)
T ss_pred CEECCCCCEeCCcCCCC-C----HHHHHHHHH----cCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHH
Confidence 45556775555566431 2 233333433 487766555544334321 0 0 122224456
Q ss_pred HHHHHHHHHHhcCCcEEEeecC--cccHHHHhh-------hcceecc----------cCCccCCHHHH----HHHH-hcC
Q 022892 75 GLKILEKVKIAYDIPIVTDVHE--TVQCEEVGK-------VADIIQI----------PAFLCRQTDLL----VAAA-KTG 130 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d--~~~~~~l~~-------~~d~~kI----------gs~~~~n~~lL----~~~a-~~~ 130 (290)
.++.+++..++.+.|++..++- ++.+..+.+ .+|++-| |+....+.+++ +++- ..+
T Consensus 78 ~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~ 157 (300)
T TIGR01037 78 FLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTD 157 (300)
T ss_pred HHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC
Confidence 6777777788889999999854 333222222 1344433 23334555554 4443 358
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----------------CCCC---CCCCchhHHHHHh-cCC
Q 022892 131 KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----------------GYND---LIVDPRNLEWMRE-ANC 190 (290)
Q Consensus 131 ~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----------------~y~~---~~~dL~~i~~lk~-~~~ 190 (290)
+||.+|-.. +.+++...++.+...|-+-+++..+...+ +|.. ..+.++.+..+++ .++
T Consensus 158 ~pv~vKi~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~i 235 (300)
T TIGR01037 158 VPVFAKLSP--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDI 235 (300)
T ss_pred CCEEEECCC--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCC
Confidence 999999874 57788888888888887666554221000 0110 0123456667777 789
Q ss_pred CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 191 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 191 pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
||+....-. . +.-+...+..||++++|=+-+. .+|.-+.++.+.+++
T Consensus 236 pvi~~GGI~-----------------s-----~~da~~~l~~GAd~V~igr~~l-----------~~p~~~~~i~~~l~~ 282 (300)
T TIGR01037 236 PIIGVGGIT-----------------S-----FEDALEFLMAGASAVQVGTAVY-----------YRGFAFKKIIEGLIA 282 (300)
T ss_pred CEEEECCCC-----------------C-----HHHHHHHHHcCCCceeecHHHh-----------cCchHHHHHHHHHHH
Confidence 998732221 1 3445666778999888765542 235677788888777
Q ss_pred HHHHhCCccc
Q 022892 271 IAKVSKGKQR 280 (290)
Q Consensus 271 ~~~~lg~~~~ 280 (290)
.-...|-+++
T Consensus 283 ~~~~~g~~~~ 292 (300)
T TIGR01037 283 FLKAEGFTSI 292 (300)
T ss_pred HHHHcCCCCH
Confidence 6666665443
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0075 Score=57.63 Aligned_cols=229 Identities=19% Similarity=0.189 Sum_probs=125.1
Q ss_pred CCchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCC-------------cc--
Q 022892 1 MDPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTS-------------SK-- 65 (290)
Q Consensus 1 ~~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts-------------~~-- 65 (290)
||-++.+ -.+...+|+++-+||..- + .+..+++.+ .|+-+|..-+...+||.. +.
T Consensus 1 ~~l~~~~-~Gl~l~nPv~~asg~~~~-~----~~~~~~~~~----~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~ 70 (334)
T PRK07565 1 MDLSTTY-LGLTLRNPLVASASPLSE-S----VDNVKRLED----AGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFA 70 (334)
T ss_pred CCceEEE-CCEecCCCCEecCcCCCC-C----HHHHHHHHH----CCCeEEEEeeCCHHHhhccccccccccccCCCcch
Confidence 3444443 357778898888888851 2 233334333 465543332333333311 00
Q ss_pred ---------cCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHH------HHhh-hcceeccc-----CC------cc-
Q 022892 66 ---------SFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCE------EVGK-VADIIQIP-----AF------LC- 117 (290)
Q Consensus 66 ---------~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~------~l~~-~~d~~kIg-----s~------~~- 117 (290)
.+...|++..++.+.+..++.++|++..++-...-+ .+.+ .+|++.|- .. +.
T Consensus 71 ~~~~~~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~ 150 (334)
T PRK07565 71 EALDYFPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVE 150 (334)
T ss_pred hhhhhhhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHH
Confidence 122334456666777777778899999996644332 2223 36777761 11 00
Q ss_pred -CCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC----------------CCCc
Q 022892 118 -RQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL----------------IVDP 179 (290)
Q Consensus 118 -~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~----------------~~dL 179 (290)
.-.++++++.+ +++||++|-+.. .+++...++.+...|-.-|++..+......+.. ..-+
T Consensus 151 ~~~~eil~~v~~~~~iPV~vKl~p~--~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al 228 (334)
T PRK07565 151 QRYLDILRAVKSAVSIPVAVKLSPY--FSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPL 228 (334)
T ss_pred HHHHHHHHHHHhccCCcEEEEeCCC--chhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHH
Confidence 01255676654 589999996543 456777777788888877777666422111000 0113
Q ss_pred hhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCCh
Q 022892 180 RNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPL 258 (290)
Q Consensus 180 ~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p 258 (290)
+.+..+++ .++||+... |.+. ..-+...+.+||+++.|=+-+- .++ |
T Consensus 229 ~~v~~~~~~~~ipIig~G--------------------GI~s--~~Da~e~l~aGA~~V~v~t~~~-----~~g-----~ 276 (334)
T PRK07565 229 RWIAILSGRVGADLAATT--------------------GVHD--AEDVIKMLLAGADVVMIASALL-----RHG-----P 276 (334)
T ss_pred HHHHHHHhhcCCCEEEEC--------------------CCCC--HHHHHHHHHcCCCceeeehHHh-----hhC-----c
Confidence 44555555 678987622 2111 1224455679999887765431 121 4
Q ss_pred HHHHHHHHHHHHHHH
Q 022892 259 RNLEELLEELVAIAK 273 (290)
Q Consensus 259 ~~l~~lv~~ir~~~~ 273 (290)
+-++++.+.|++.-.
T Consensus 277 ~~~~~i~~~L~~~l~ 291 (334)
T PRK07565 277 DYIGTILRGLEDWME 291 (334)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666665444
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0062 Score=56.52 Aligned_cols=201 Identities=15% Similarity=0.159 Sum_probs=113.8
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCC---c---------------cc-----
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTS---S---------------KS----- 66 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts---~---------------~~----- 66 (290)
.+...+|+.+=|||.. ...++.+.+.+ +|+.+|.-.+....|+.. | .+
T Consensus 5 G~~~~nPv~~aag~~~-----~~~~~~~~~~~----~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~ 75 (289)
T cd02810 5 GLKLKNPFGVAAGPLL-----KTGELIARAAA----AGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSF 75 (289)
T ss_pred CEECCCCCEeCCCCCC-----CCHHHHHHHHH----cCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecC
Confidence 4566788888888884 12344444444 576654443333223311 1 00
Q ss_pred -CCCCChhHHHHHHHHHHHh-cCCcEEEeecC--cccH----HHHhhh-cceecccCC---------ccCCHH----HHH
Q 022892 67 -FRGPGMVEGLKILEKVKIA-YDIPIVTDVHE--TVQC----EEVGKV-ADIIQIPAF---------LCRQTD----LLV 124 (290)
Q Consensus 67 -~~g~~~~~~l~~L~~~~~~-~Gi~~~s~~~d--~~~~----~~l~~~-~d~~kIgs~---------~~~n~~----lL~ 124 (290)
+...+.+..++++.+..+. .+.+++..+.- +++. +.+.+. +|++-|--. ..++.. +++
T Consensus 76 g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~ 155 (289)
T cd02810 76 GLPNLGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLK 155 (289)
T ss_pred CCCCcCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHH
Confidence 1222334556666666655 58999998874 3332 223332 666655211 123443 345
Q ss_pred HHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----------------CC---CCCCCCchhHHH
Q 022892 125 AAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----------------GY---NDLIVDPRNLEW 184 (290)
Q Consensus 125 ~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----------------~y---~~~~~dL~~i~~ 184 (290)
++.+ .++||++|-+...+.+|+...++.+...|-+-+++..+.... +| +.....++.+..
T Consensus 156 ~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~ 235 (289)
T cd02810 156 AVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVAR 235 (289)
T ss_pred HHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHH
Confidence 5543 489999999887788899999999998887656554432110 00 001124566777
Q ss_pred HHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 185 MRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 185 lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
+++ . ++||+....=. . ..-+...+++||+++++=+
T Consensus 236 i~~~~~~~ipiia~GGI~-----------------~-----~~da~~~l~~GAd~V~vg~ 273 (289)
T cd02810 236 LAARLQLDIPIIGVGGID-----------------S-----GEDVLEMLMAGASAVQVAT 273 (289)
T ss_pred HHHhcCCCCCEEEECCCC-----------------C-----HHHHHHHHHcCccHheEcH
Confidence 777 6 79997621111 1 3345566778999877644
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.027 Score=49.43 Aligned_cols=178 Identities=16% Similarity=0.107 Sum_probs=105.2
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH 95 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~ 95 (290)
++|+|..+....+ +...+..+++.+ .|+++|-....+ ..+....+.++.+.+.|+.+|++++..
T Consensus 8 ~~~~it~~~~~~~-~~~~~~~~~~~~----~gv~~v~lr~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 71 (212)
T PRK00043 8 RLYLITDSRDDSG-RDLLEVVEAALE----GGVTLVQLREKG---------LDTRERLELARALKELCRRYGVPLIVN-- 71 (212)
T ss_pred CEEEEECCccccc-ccHHHHHHHHHh----cCCCEEEEeCCC---------CCHHHHHHHHHHHHHHHHHhCCeEEEe--
Confidence 5788887654212 224444555544 598887332111 011112356677888889999998875
Q ss_pred CcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec----CCC
Q 022892 96 ETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG----TMF 170 (290)
Q Consensus 96 d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g----s~~ 170 (290)
+.++.+.+ .++.+-+++.+.. ...++..-..++.+.+++. |.+|+..|.+ .|-+.+ .+... +..
T Consensus 72 --~~~~~a~~~gad~vh~~~~~~~-~~~~~~~~~~~~~~g~~~~---t~~e~~~a~~----~gaD~v-~~~~~~~~~~~~ 140 (212)
T PRK00043 72 --DRVDLALAVGADGVHLGQDDLP-VADARALLGPDAIIGLSTH---TLEEAAAALA----AGADYV-GVGPIFPTPTKK 140 (212)
T ss_pred --ChHHHHHHcCCCEEecCcccCC-HHHHHHHcCCCCEEEEeCC---CHHHHHHHhH----cCCCEE-EECCccCCCCCC
Confidence 45676666 6898888776433 2333444455677888775 7888887754 455444 33211 111
Q ss_pred CCCCCCCCchhHHHHHh-cC-CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 171 GYNDLIVDPRNLEWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 171 ~y~~~~~dL~~i~~lk~-~~-~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
++. ....+..+..+++ ++ +||..+.--+ ..-...+.++||+|+++-+-+.
T Consensus 141 ~~~-~~~g~~~~~~~~~~~~~~~v~a~GGI~-----------------------~~~i~~~~~~Ga~gv~~gs~i~ 192 (212)
T PRK00043 141 DAK-APQGLEGLREIRAAVGDIPIVAIGGIT-----------------------PENAPEVLEAGADGVAVVSAIT 192 (212)
T ss_pred CCC-CCCCHHHHHHHHHhcCCCCEEEECCcC-----------------------HHHHHHHHHcCCCEEEEeHHhh
Confidence 111 1123677888877 66 9998742111 2334567889999999988774
|
|
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.062 Score=50.61 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH----HHHHHHHhcCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK----ILEKVKIAYDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~----~L~~~~~~~Gi~~~s~~~d~~~~~~l 103 (290)
+.+..++.|+++++. ||++|=-..-. |.|++ .....++.++ .++.+.++.++++--+-++++.++..
T Consensus 36 ~~~~a~~~a~~~~~~----GAdIIDIGgeS----TrPg~-~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~~~va~~A 106 (282)
T PRK11613 36 SLIDAVKHANLMINA----GATIIDVGGES----TRPGA-AEVSVEEELDRVIPVVEAIAQRFEVWISVDTSKPEVIRES 106 (282)
T ss_pred CHHHHHHHHHHHHHC----CCcEEEECCCC----CCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHH
Confidence 568889999999884 99998665332 22321 1122233333 34555566799998899999999887
Q ss_pred hh-hccee-cccCCccCCHHHHHHHHhcCCeEEEeC--CCCCC--------------HHHHHHHHHHHHHcCCC-cEEEE
Q 022892 104 GK-VADII-QIPAFLCRQTDLLVAAAKTGKIINIKK--GQFCA--------------SSVMVNSAEKVRLAGNP-NVMVC 164 (290)
Q Consensus 104 ~~-~~d~~-kIgs~~~~n~~lL~~~a~~~~PVilst--G~~~t--------------l~e~~~Ave~i~~~Gn~-~i~L~ 164 (290)
.+ .++++ -|.+. +...+++.+++.+.|+++-- |...+ ...+.+.++.+.+.|-. +=+++
T Consensus 107 L~~GadiINDI~g~--~d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~Iil 184 (282)
T PRK11613 107 AKAGAHIINDIRSL--SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLL 184 (282)
T ss_pred HHcCCCEEEECCCC--CCHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence 66 68876 34443 34567788899999988853 22112 13445666777778843 34667
Q ss_pred eecCCCCCCCCCCCc---hhHHHHHhcCCCEEEeCC
Q 022892 165 ERGTMFGYNDLIVDP---RNLEWMREANCPVVADVT 197 (290)
Q Consensus 165 ~~gs~~~y~~~~~dL---~~i~~lk~~~~pV~~D~s 197 (290)
.-|..|+-. ..-|+ +.+..++++++||.+-.|
T Consensus 185 DPGiGF~k~-~~~n~~ll~~l~~l~~lg~Pilvg~S 219 (282)
T PRK11613 185 DPGFGFGKN-LSHNYQLLARLAEFHHFNLPLLVGMS 219 (282)
T ss_pred eCCCCcCCC-HHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 777644321 12244 444555557999865333
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.036 Score=50.56 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
-.++|+.+.+ .|++.+...-.+.+ .+. ...+..+++.+++.++|+.. =+-+.++++.+-+ .++
T Consensus 34 p~~~a~~~~~----~g~~~l~ivDLd~~--------~g~--~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~ 99 (241)
T PRK14024 34 PLDAALAWQR----DGAEWIHLVDLDAA--------FGR--GSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCA 99 (241)
T ss_pred HHHHHHHHHH----CCCCEEEEEecccc--------CCC--CccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCC
Confidence 4678888776 59987766545421 121 24568888999999998877 7888888888877 699
Q ss_pred eecccCCccCCHHHHHHHHhc-CCeEEE----eCCC------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT-GKIINI----KKGQ------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~-~~PVil----stG~------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~ 177 (290)
-.-+||..+.|.++++++++. +.-|++ +.+. .-+..+..+.++.+...|-..+++..+...-.|.- .
T Consensus 100 kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G--~ 177 (241)
T PRK14024 100 RVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTG--P 177 (241)
T ss_pred EEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccC--C
Confidence 999999999999999887643 322332 2221 00223344555566777877777766654212322 3
Q ss_pred CchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH---HcCCCEEEEeeeCCCCCCCCCCC
Q 022892 178 DPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI---AVGVDGVFMEVHDDPLNAPVDGP 253 (290)
Q Consensus 178 dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAv---a~GA~G~~IEkH~t~dka~~D~~ 253 (290)
|+..+..+++ .++||++...-+ . . ..+. ... ..|++|+|+=+-+ |.
T Consensus 178 d~~~i~~i~~~~~ipviasGGi~-----------------s---~-~D~~-~l~~~~~~GvdgV~igra~--------~~ 227 (241)
T PRK14024 178 NLELLREVCARTDAPVVASGGVS-----------------S---L-DDLR-ALAELVPLGVEGAIVGKAL--------YA 227 (241)
T ss_pred CHHHHHHHHhhCCCCEEEeCCCC-----------------C---H-HHHH-HHhhhccCCccEEEEeHHH--------Hc
Confidence 7788888888 789998832222 1 0 2222 222 3599999998766 44
Q ss_pred CCCChHHHHHH
Q 022892 254 TQWPLRNLEEL 264 (290)
Q Consensus 254 ~sl~p~~l~~l 264 (290)
..+++++..+.
T Consensus 228 g~~~~~~~~~~ 238 (241)
T PRK14024 228 GAFTLPEALAV 238 (241)
T ss_pred CCCCHHHHHHH
Confidence 45666665544
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.028 Score=53.68 Aligned_cols=174 Identities=15% Similarity=0.144 Sum_probs=95.7
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC-Cc----------c------cCCCCCh
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT-SS----------K------SFRGPGM 72 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt-s~----------~------~~~g~~~ 72 (290)
.+...+|+.+=+|+.- ..+..+++. ++|+.+|.-.+...+||. .+ . .+...|+
T Consensus 45 Gl~l~nPi~~AsG~~~------~~~~~~~~~----~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~ 114 (327)
T cd04738 45 GLTFPNPVGLAAGFDK------NAEAIDALL----ALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGA 114 (327)
T ss_pred CEECCCCCEeCcCCCC------CHHHHHHHH----HCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccH
Confidence 4556777654444332 223344443 368776555454433432 11 1 1122333
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcc------cH-HHH------hhhcceecc--------cCCccCCHH----HHHHHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETV------QC-EEV------GKVADIIQI--------PAFLCRQTD----LLVAAA 127 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~------~~-~~l------~~~~d~~kI--------gs~~~~n~~----lL~~~a 127 (290)
+..++.+++... .++|++.++.-.. .. ++. .+.+|++-+ +.+..++.+ +++++-
T Consensus 115 ~~~~~~l~~~~~-~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~ 193 (327)
T cd04738 115 DAVAKRLKKRRP-RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVK 193 (327)
T ss_pred HHHHHHHHHhcc-CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHH
Confidence 444555655433 6899999986532 12 222 122555433 333344444 444443
Q ss_pred h-cC-----CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-------------CCCC---CCCCchhHHHH
Q 022892 128 K-TG-----KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-------------GYND---LIVDPRNLEWM 185 (290)
Q Consensus 128 ~-~~-----~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-------------~y~~---~~~dL~~i~~l 185 (290)
+ ++ +||.+|-....+.+++...++.+...|-+-|++..+.... +|.- ..+.++.+..+
T Consensus 194 ~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l 273 (327)
T cd04738 194 EERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLREL 273 (327)
T ss_pred HHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHH
Confidence 3 33 8999999987777899999998888887777766543211 1111 11346777888
Q ss_pred Hh-c--CCCEEE
Q 022892 186 RE-A--NCPVVA 194 (290)
Q Consensus 186 k~-~--~~pV~~ 194 (290)
++ . ++||+.
T Consensus 274 ~~~~~~~ipIi~ 285 (327)
T cd04738 274 YKLTGGKIPIIG 285 (327)
T ss_pred HHHhCCCCcEEE
Confidence 77 5 689876
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.031 Score=51.12 Aligned_cols=188 Identities=20% Similarity=0.214 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
..+.|+.+.+ .|++.+.-...+. ....+ ...++.+++++++.++|+.. -+.+.++++.+.+ .++
T Consensus 32 ~~~~a~~~~~----~G~~~i~i~dl~~-----~~~~~----~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~ 98 (253)
T PRK02083 32 PVELAKRYNE----EGADELVFLDITA-----SSEGR----DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGAD 98 (253)
T ss_pred HHHHHHHHHH----cCCCEEEEEeCCc-----ccccC----cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCC
Confidence 4677777654 6988776654442 11111 24577888888888999988 7888888887766 699
Q ss_pred eecccCCccCCHHHHHHHHhc-C-CeEEEeCC-----------------CCCCHHHHHHHHHHHHHcCCCcEEE--Eee-
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT-G-KIINIKKG-----------------QFCASSVMVNSAEKVRLAGNPNVMV--CER- 166 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~-~-~PVilstG-----------------~~~tl~e~~~Ave~i~~~Gn~~i~L--~~~- 166 (290)
.+.||+..+.|.++++++.+. + --|+++-. ...+-.+....++.+...|-..+++ +++
T Consensus 99 ~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~ 178 (253)
T PRK02083 99 KVSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRD 178 (253)
T ss_pred EEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCC
Confidence 999999999999999887664 2 11222221 0001112223334455667777777 445
Q ss_pred cCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCC
Q 022892 167 GTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 167 gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~ 245 (290)
|+..+| |+..+..+++ .++||++...-. . . ..+..+....|++|+|+=+-+
T Consensus 179 g~~~g~-----d~~~i~~~~~~~~ipvia~GGv~-----------------s---~-~d~~~~~~~~G~~gvivg~al-- 230 (253)
T PRK02083 179 GTKNGY-----DLELTRAVSDAVNVPVIASGGAG-----------------N---L-EHFVEAFTEGGADAALAASIF-- 230 (253)
T ss_pred CCCCCc-----CHHHHHHHHhhCCCCEEEECCCC-----------------C---H-HHHHHHHHhCCccEEeEhHHH--
Confidence 332233 6777888877 789998832221 1 0 233332223699999997655
Q ss_pred CCCCCCCCCCCChHHHHHHHH
Q 022892 246 LNAPVDGPTQWPLRNLEELLE 266 (290)
Q Consensus 246 dka~~D~~~sl~p~~l~~lv~ 266 (290)
|...++++++++.++
T Consensus 231 ------~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 231 ------HFGEITIGELKAYLA 245 (253)
T ss_pred ------HcCCCCHHHHHHHHH
Confidence 444677777766654
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.028 Score=52.18 Aligned_cols=188 Identities=14% Similarity=0.103 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH-hcCCcEEEeec--CcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI-AYDIPIVTDVH--ETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~-~~Gi~~~s~~~--d~~~~~~l~ 104 (290)
+.+...++|+.|-+ +|++.|=..+-..........+.-.. .+.++.+.+..+ +.-+..++.+. +.+.++...
T Consensus 18 ~~~~~~~ia~~L~~----~GVd~IEvG~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 18 GDEFVKAIYRALAA----AGIDYVEIGYRSSPEKEFKGKSAFCD-DEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEeecCCCCccccCCCccCCC-HHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHh
Confidence 56677788888777 59998866532210111111111111 355666666543 45555555554 345566655
Q ss_pred h-hcceecccCCc--cCC-HHHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC
Q 022892 105 K-VADIIQIPAFL--CRQ-TDLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD 178 (290)
Q Consensus 105 ~-~~d~~kIgs~~--~~n-~~lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d 178 (290)
+ .++++.|.-.. +.+ .+.++.+.+.|..|.+. .....+.+.+...++.+...|-..+.|+...... +|. ++-
T Consensus 93 ~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~-~P~-~v~ 170 (266)
T cd07944 93 GSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSM-YPE-DIK 170 (266)
T ss_pred cCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCC-CHH-HHH
Confidence 5 58887776432 222 23455555677766654 3333489999999999998898888888876631 222 122
Q ss_pred chhHHHHHh-cC--CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 179 PRNLEWMRE-AN--CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 179 L~~i~~lk~-~~--~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.-+..+++ ++ +||++ +.|-+ ..+...-+.+|+.+||+ .|+.-+.
T Consensus 171 -~lv~~l~~~~~~~~~i~~-H~Hn~------------------~Gla~AN~laA~~aGa~--~vd~s~~ 217 (266)
T cd07944 171 -RIISLLRSNLDKDIKLGF-HAHNN------------------LQLALANTLEAIELGVE--IIDATVY 217 (266)
T ss_pred -HHHHHHHHhcCCCceEEE-EeCCC------------------ccHHHHHHHHHHHcCCC--EEEEecc
Confidence 44566676 66 89999 88864 22335557789999997 7776553
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.069 Score=48.18 Aligned_cols=172 Identities=15% Similarity=0.192 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
.++.|+++.+ .|++.+-. .++ .. ...+. ...+..+++.|++.++|+.. -+.+.++++.+.+ .++
T Consensus 34 ~~e~a~~~~~----~G~~~l~i--~dl-~~----~~~~~--~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~ 100 (241)
T PRK13585 34 PVEVAKRWVD----AGAETLHL--VDL-DG----AFEGE--RKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVD 100 (241)
T ss_pred HHHHHHHHHH----cCCCEEEE--Eec-hh----hhcCC--cccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCC
Confidence 4677777765 59887633 232 11 11121 24577899999999998888 5678888888777 699
Q ss_pred eecccCCccCCHHHHHHHHhc-CC-eEEE--e--------CCC----CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT-GK-IINI--K--------KGQ----FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~-~~-PVil--s--------tG~----~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
.+-||+..+.+.++++++.+. +. -|++ + +|. ..++.++ ++.+...|-..+++..+...-.+
T Consensus 101 ~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~---~~~~~~~G~~~i~~~~~~~~g~~ 177 (241)
T PRK13585 101 RVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEA---AKRFEELGAGSILFTNVDVEGLL 177 (241)
T ss_pred EEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHH---HHHHHHcCCCEEEEEeecCCCCc
Confidence 999999999999888887654 21 2322 2 121 1134443 33445678777877665322112
Q ss_pred CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.-.|+..+..+.+ .++||++-. |.+.. .. .......||+|+++=+-+
T Consensus 178 --~g~~~~~i~~i~~~~~iPvia~G--------------------GI~~~-~d-i~~~~~~Ga~gv~vgsa~ 225 (241)
T PRK13585 178 --EGVNTEPVKELVDSVDIPVIASG--------------------GVTTL-DD-LRALKEAGAAGVVVGSAL 225 (241)
T ss_pred --CCCCHHHHHHHHHhCCCCEEEeC--------------------CCCCH-HH-HHHHHHcCCCEEEEEHHH
Confidence 2257777888877 789998721 21111 22 223577899999997766
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.053 Score=48.62 Aligned_cols=173 Identities=17% Similarity=0.177 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
..+++|+.+.+ .|++.+..-..+. + +.+. ...+..++++++..++|+.. -+-+.++++.+.+ .+
T Consensus 29 dp~~~a~~~~~----~g~~~l~v~dl~~---~----~~g~--~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga 95 (230)
T TIGR00007 29 DPVEAAKKWEE----EGAERIHVVDLDG---A----KEGG--PVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGV 95 (230)
T ss_pred CHHHHHHHHHH----cCCCEEEEEeCCc---c----ccCC--CCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCC
Confidence 35788888755 5888766543331 1 1121 13467788888888888888 6677788887776 69
Q ss_pred ceecccCCccCCHHHHHHHHh-cC-CeEEEe----------CCC----CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAK-TG-KIINIK----------KGQ----FCASSVMVNSAEKVRLAGNPNVMVCERGTMFG 171 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~-~~-~PVils----------tG~----~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~ 171 (290)
+.+-+|+..+.|.++++++++ .+ .+|+++ .|- ..++.+ .++.+...|-..+++..+... +
T Consensus 96 ~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~---~~~~~~~~g~~~ii~~~~~~~-g 171 (230)
T TIGR00007 96 DRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEE---LAKRLEELGLEGIIYTDISRD-G 171 (230)
T ss_pred CEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHH---HHHHHHhCCCCEEEEEeecCC-C
Confidence 999999999999988888665 44 455543 121 113333 344455677666666655432 1
Q ss_pred CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 172 YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.. ...|+..+..+++ .++||++.. |.+.. ..+. .+...||+|++|=+.+
T Consensus 172 ~~-~g~~~~~i~~i~~~~~ipvia~G--------------------Gi~~~-~di~-~~~~~Gadgv~ig~a~ 221 (230)
T TIGR00007 172 TL-SGPNFELTKELVKAVNVPVIASG--------------------GVSSI-DDLI-ALKKLGVYGVIVGKAL 221 (230)
T ss_pred Cc-CCCCHHHHHHHHHhCCCCEEEeC--------------------CCCCH-HHHH-HHHHCCCCEEEEeHHH
Confidence 11 1257888888887 789998732 21111 2233 3456899999997665
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.21 Score=44.75 Aligned_cols=192 Identities=15% Similarity=0.204 Sum_probs=123.2
Q ss_pred HHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc
Q 022892 7 LFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY 86 (290)
Q Consensus 7 ~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~ 86 (290)
|.+.+ ...+++.|.-. .+.+..+++++.+.+ .|+.++-.. ++ . ..+++.++++++++
T Consensus 3 ~~~~l-~~~~~~~v~r~---~~~~~~~~~~~a~~~----gGi~~iEvt-~~-----------~---~~~~~~i~~l~~~~ 59 (206)
T PRK09140 3 LMQPF-TKLPLIAILRG---ITPDEALAHVGALIE----AGFRAIEIP-LN-----------S---PDPFDSIAALVKAL 59 (206)
T ss_pred hhhHH-HhCCEEEEEeC---CCHHHHHHHHHHHHH----CCCCEEEEe-CC-----------C---ccHHHHHHHHHHHc
Confidence 44455 33444444322 256777888888777 588866432 21 1 24566888889888
Q ss_pred CCc--EEE-eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 022892 87 DIP--IVT-DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVM 162 (290)
Q Consensus 87 Gi~--~~s-~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~ 162 (290)
+-+ +-+ |+++.++++...+ ..+++-.|. .+.++++++...+.|++.. .. |++|+..|.+ .|-+.+.
T Consensus 60 ~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~---~~~~v~~~~~~~~~~~~~G--~~-t~~E~~~A~~----~Gad~vk 129 (206)
T PRK09140 60 GDRALIGAGTVLSPEQVDRLADAGGRLIVTPN---TDPEVIRRAVALGMVVMPG--VA-TPTEAFAALR----AGAQALK 129 (206)
T ss_pred CCCcEEeEEecCCHHHHHHHHHcCCCEEECCC---CCHHHHHHHHHCCCcEEcc--cC-CHHHHHHHHH----cCCCEEE
Confidence 743 323 8999999999877 699988877 4568888888889998887 44 9999988865 5666665
Q ss_pred EEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 163 VCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 163 L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
+ | |...+.+..+..++. + ++|++. . +|.. ..-...-.+.|++|+.+
T Consensus 130 ~------F--pa~~~G~~~l~~l~~~~~~~ipvva--i------------------GGI~---~~n~~~~~~aGa~~vav 178 (206)
T PRK09140 130 L------F--PASQLGPAGIKALRAVLPPDVPVFA--V------------------GGVT---PENLAPYLAAGAAGFGL 178 (206)
T ss_pred E------C--CCCCCCHHHHHHHHhhcCCCCeEEE--E------------------CCCC---HHHHHHHHHCCCeEEEE
Confidence 4 3 333356778888887 6 488864 1 2310 22233456789999887
Q ss_pred eeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 240 EVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 240 EkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
=+-++... .+.++.++..+.+++
T Consensus 179 ~s~l~~~~--------~~~~~i~~~a~~~~~ 201 (206)
T PRK09140 179 GSALYRPG--------QSAEEVAERARAFVA 201 (206)
T ss_pred ehHhcccc--------cChHHHHHHHHHHHH
Confidence 66653311 123456665555543
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.11 Score=47.15 Aligned_cols=191 Identities=18% Similarity=0.156 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
...+.|+++.+ .|++.+.....+ ... . +. ...+..+++++++.++|++. -+.+.+++..+.+ .+
T Consensus 28 d~~~~a~~~~~----~G~~~i~i~d~~-----~~~-~-~~--~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~ 94 (243)
T cd04731 28 DPVELAKRYNE----QGADELVFLDIT-----ASS-E-GR--ETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGA 94 (243)
T ss_pred CHHHHHHHHHH----CCCCEEEEEcCC-----ccc-c-cC--cccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 45778888776 599866554333 111 1 11 23467788888888999888 6888888877766 69
Q ss_pred ceecccCCccCCHHHHHHHHh-cC--C---eEEEeCC------------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAK-TG--K---IINIKKG------------QFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~-~~--~---PVilstG------------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
+.+.+|+....|..+++++.+ .+ + +|=++.+ ...+..+...-++.+...|-..+++..+...
T Consensus 95 ~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~ 174 (243)
T cd04731 95 DKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRD 174 (243)
T ss_pred ceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCC
Confidence 999999999999998887755 22 1 2212211 1112333444445566677766666443321
Q ss_pred CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc-CCCEEEEeeeCCCCC
Q 022892 170 FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV-GVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~-GA~G~~IEkH~t~dk 247 (290)
-.. .-.|+..+..+++ .++||+...... . +.-+..+... |++|+++=+-+
T Consensus 175 g~~--~g~~~~~i~~i~~~~~~pvia~GGi~-----------------~-----~~di~~~l~~~g~dgv~vg~al---- 226 (243)
T cd04731 175 GTK--KGYDLELIRAVSSAVNIPVIASGGAG-----------------K-----PEHFVEAFEEGGADAALAASIF---- 226 (243)
T ss_pred CCC--CCCCHHHHHHHHhhCCCCEEEeCCCC-----------------C-----HHHHHHHHHhCCCCEEEEeHHH----
Confidence 111 1236777788877 789998732222 1 2223344554 99999986544
Q ss_pred CCCCCCCCCChHHHHHHHH
Q 022892 248 APVDGPTQWPLRNLEELLE 266 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~ 266 (290)
|...+++.+++++++
T Consensus 227 ----~~~~~~~~~~~~~~~ 241 (243)
T cd04731 227 ----HFGEYTIAELKEYLA 241 (243)
T ss_pred ----HcCCCCHHHHHHHHh
Confidence 223345556555543
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.086 Score=47.20 Aligned_cols=173 Identities=16% Similarity=0.158 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
...++|+.+.+ .|++.+.....+. + +++. ...+..+++++++.++|+.. =+-+.++++.+.+ .+
T Consensus 31 ~~~~~a~~~~~----~g~~~i~v~dld~---~----~~g~--~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga 97 (233)
T PRK00748 31 DPVAQAKAWED----QGAKWLHLVDLDG---A----KAGK--PVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGV 97 (233)
T ss_pred CHHHHHHHHHH----cCCCEEEEEeCCc---c----ccCC--cccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCC
Confidence 35778888877 5988776544331 0 1121 13477788888888999887 5667777777766 69
Q ss_pred ceecccCCccCCHHHHHHHHhc---CCeEEEe--------CC----CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAKT---GKIINIK--------KG----QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~~---~~PVils--------tG----~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
+.+.+|+..+.+.++++++.+. ..+|-+. .| ...++.|+.. .+...|...+++..+...-.+
T Consensus 98 ~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~---~~~~~g~~~ii~~~~~~~g~~ 174 (233)
T PRK00748 98 SRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAK---RFEDAGVKAIIYTDISRDGTL 174 (233)
T ss_pred CEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHH---HHHhcCCCEEEEeeecCcCCc
Confidence 9999999999999888887654 2333322 11 1224445444 445556655555545432112
Q ss_pred CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CCEEEEeeeC
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVHD 243 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G-A~G~~IEkH~ 243 (290)
. -.|+..+..+++ .++||+....-. . ..=.......| |+|+|+=+-+
T Consensus 175 ~--G~d~~~i~~l~~~~~ipvia~GGi~-----------------~-----~~di~~~~~~g~~~gv~vg~a~ 223 (233)
T PRK00748 175 S--GPNVEATRELAAAVPIPVIASGGVS-----------------S-----LDDIKALKGLGAVEGVIVGRAL 223 (233)
T ss_pred C--CCCHHHHHHHHHhCCCCEEEeCCCC-----------------C-----HHHHHHHHHcCCccEEEEEHHH
Confidence 2 257888888888 789998732221 1 22233455667 9999987654
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.081 Score=47.94 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEEeecC-cccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVTDVHE-TVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s~~~d-~~~~~~l~~ 105 (290)
+.+..+++++.|.+ +|++.|-..++.. +... +. .+..++.++++.+.. ++.+.+-... .+.++.+.+
T Consensus 17 s~e~~~~i~~~L~~----~GV~~IEvg~~~~-~~~~---p~---~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~ 85 (265)
T cd03174 17 STEDKLEIAEALDE----AGVDSIEVGSGAS-PKAV---PQ---MEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALE 85 (265)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEeccCcC-cccc---cc---CCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHh
Confidence 55666777777666 6999988876653 1111 11 134455555554443 4666443333 677777777
Q ss_pred -hcceecccCCccC-------------CH----HHHHHHHhcCCeEEEeC--CCC--CCHHHHHHHHHHHHHcCCCcEEE
Q 022892 106 -VADIIQIPAFLCR-------------QT----DLLVAAAKTGKIINIKK--GQF--CASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 106 -~~d~~kIgs~~~~-------------n~----~lL~~~a~~~~PVilst--G~~--~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
.++.+.|.-.... +. +.++.+.+.|++|.+.. -.. .+++++.+.++.+...|-..+.|
T Consensus 86 ~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 86 AGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred CCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 5777777654331 12 34455667788887776 222 48899999999999899877777
Q ss_pred EeecCCCCCCCCCCCchhHHHHHh-cC-CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 164 CERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 164 ~~~gs~~~y~~~~~dL~~i~~lk~-~~-~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
+.-... -+|. ++. .-+..+++ +. +|+++ +.|-. +.+...-+.+|+.+||+ .|+.
T Consensus 166 ~Dt~G~-~~P~-~v~-~li~~l~~~~~~~~~~~-H~Hn~------------------~gla~an~laA~~aG~~--~id~ 221 (265)
T cd03174 166 KDTVGL-ATPE-EVA-ELVKALREALPDVPLGL-HTHNT------------------LGLAVANSLAALEAGAD--RVDG 221 (265)
T ss_pred chhcCC-cCHH-HHH-HHHHHHHHhCCCCeEEE-EeCCC------------------CChHHHHHHHHHHcCCC--EEEe
Confidence 665442 1222 121 44666777 55 89999 77764 22335667889999997 7776
Q ss_pred eC
Q 022892 242 HD 243 (290)
Q Consensus 242 H~ 243 (290)
-+
T Consensus 222 s~ 223 (265)
T cd03174 222 SV 223 (265)
T ss_pred cc
Confidence 55
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.075 Score=47.80 Aligned_cols=177 Identities=15% Similarity=0.144 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
..+++|+++.+ .|++.+.....+. .. .+. ...+..+++++++.++|+.. .+.+.++++.+.+ .+
T Consensus 31 dp~~~a~~~~~----~g~~~i~i~dl~~-----~~--~~~--~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~ 97 (232)
T TIGR03572 31 DPVNAARIYNA----KGADELIVLDIDA-----SK--RGR--EPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGA 97 (232)
T ss_pred CHHHHHHHHHH----cCCCEEEEEeCCC-----cc--cCC--CCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCC
Confidence 46788888865 5888665543331 11 011 13466788888888888777 7888888887766 59
Q ss_pred ceecccCCccCCHHHHHHHHhc-CCe-EEEe----CCC-------------CCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAKT-GKI-INIK----KGQ-------------FCASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~~-~~P-Vils----tG~-------------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
+.+-+|+..+.|.++++++.+. +.. ++++ .+. ..+..+....++.+...|-..+++..+..
T Consensus 98 ~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~ 177 (232)
T TIGR03572 98 DKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDR 177 (232)
T ss_pred CEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCc
Confidence 9999999999999999887653 332 3322 210 00223344556667777877777666332
Q ss_pred CCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 169 MFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 169 ~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.-.+ .-.|+..+..+++ .++||+.-.... . ...+.......||+|+++=+-|
T Consensus 178 ~g~~--~g~~~~~~~~i~~~~~ipvia~GGi~-----------------s----~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 178 DGTM--KGYDLELIKTVSDAVSIPVIALGGAG-----------------S----LDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred cCCc--CCCCHHHHHHHHhhCCCCEEEECCCC-----------------C----HHHHHHHHHHcCCCEEEEehhh
Confidence 1112 2247778888887 789998722211 1 1334443566799999986543
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.038 Score=53.14 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcc------cH-HH------Hhhhcceecc--------cCCccCCH----HHHHHHHh
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETV------QC-EE------VGKVADIIQI--------PAFLCRQT----DLLVAAAK 128 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~------~~-~~------l~~~~d~~kI--------gs~~~~n~----~lL~~~a~ 128 (290)
..++.+++.. .++|++.++.-.. .. ++ +.+.+|++-+ +.+..++. ++++++-+
T Consensus 126 ~~~~~l~~~~--~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~ 203 (344)
T PRK05286 126 ALAERLKKAY--RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKE 203 (344)
T ss_pred HHHHHHHHhc--CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHH
Confidence 3444454433 6899999986421 11 21 2223555533 33333343 34455433
Q ss_pred -cC-----CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-------------CCCC---CCCCchhHHHHH
Q 022892 129 -TG-----KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-------------GYND---LIVDPRNLEWMR 186 (290)
Q Consensus 129 -~~-----~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-------------~y~~---~~~dL~~i~~lk 186 (290)
.+ +||++|-+...+.+++.+.++.+...|-+-|++..+.... +|.- ..+.++.+..++
T Consensus 204 ~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~ 283 (344)
T PRK05286 204 AQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLY 283 (344)
T ss_pred HHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHH
Confidence 34 8999999988788899999998888888766666553211 1110 123566777777
Q ss_pred h-c--CCCEEE
Q 022892 187 E-A--NCPVVA 194 (290)
Q Consensus 187 ~-~--~~pV~~ 194 (290)
+ . ++||+.
T Consensus 284 ~~~~~~ipIig 294 (344)
T PRK05286 284 KELGGRLPIIG 294 (344)
T ss_pred HHhCCCCCEEE
Confidence 7 5 689876
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.27 Score=46.98 Aligned_cols=173 Identities=17% Similarity=0.189 Sum_probs=95.3
Q ss_pred CChhHHHHHHHHHHHhcCCcEEEeecCccc---HHH---Hhh-hcceecccCCcc------CC-------HHHHHHHH-h
Q 022892 70 PGMVEGLKILEKVKIAYDIPIVTDVHETVQ---CEE---VGK-VADIIQIPAFLC------RQ-------TDLLVAAA-K 128 (290)
Q Consensus 70 ~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~---~~~---l~~-~~d~~kIgs~~~------~n-------~~lL~~~a-~ 128 (290)
.|++..++.+++..++.+.|++.+++-... .++ +.+ .+|++.|--..+ .. .++++.+. .
T Consensus 82 ~g~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~ 161 (325)
T cd04739 82 LGPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA 161 (325)
T ss_pred cCHHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc
Confidence 344556667777666678999999864322 112 222 256665522211 10 24566664 3
Q ss_pred cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC--C--------------CCCCchhHHHHHh-cCCC
Q 022892 129 TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN--D--------------LIVDPRNLEWMRE-ANCP 191 (290)
Q Consensus 129 ~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~--~--------------~~~dL~~i~~lk~-~~~p 191 (290)
+++||++|-... ++++...++.+...|-.-|++..+......+ . ...-|+.+..+++ .++|
T Consensus 162 ~~iPv~vKl~p~--~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ip 239 (325)
T cd04739 162 VTIPVAVKLSPF--FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKAS 239 (325)
T ss_pred cCCCEEEEcCCC--ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCC
Confidence 589999997654 4577777777788888778777765221000 0 0112345555655 6789
Q ss_pred EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 192 V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
|+... |.+. ..-+...+.+||+++.|=+-+- .+ .|+-+.++.+++.+.
T Consensus 240 Iig~G--------------------GI~s--~~Da~e~l~aGA~~Vqv~ta~~-----~~-----gp~~~~~i~~~L~~~ 287 (325)
T cd04739 240 LAASG--------------------GVHD--AEDVVKYLLAGADVVMTTSALL-----RH-----GPDYIGTLLAGLEAW 287 (325)
T ss_pred EEEEC--------------------CCCC--HHHHHHHHHcCCCeeEEehhhh-----hc-----CchHHHHHHHHHHHH
Confidence 87621 2111 1224445678999776653321 11 245566666666554
Q ss_pred HHHhC
Q 022892 272 AKVSK 276 (290)
Q Consensus 272 ~~~lg 276 (290)
-...|
T Consensus 288 l~~~g 292 (325)
T cd04739 288 MEEHG 292 (325)
T ss_pred HHHcC
Confidence 33333
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.12 Score=48.68 Aligned_cols=147 Identities=14% Similarity=0.078 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHhc-CCcEEEeecCc---ccH----HHHhh-hcceecc-------------cCCccCCHHHH----HHH
Q 022892 73 VEGLKILEKVKIAY-DIPIVTDVHET---VQC----EEVGK-VADIIQI-------------PAFLCRQTDLL----VAA 126 (290)
Q Consensus 73 ~~~l~~L~~~~~~~-Gi~~~s~~~d~---~~~----~~l~~-~~d~~kI-------------gs~~~~n~~lL----~~~ 126 (290)
...++.+++..+.. +.|++..++-. ++. +.+.+ .+|++-| |+..+.+.+++ +++
T Consensus 84 ~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v 163 (299)
T cd02940 84 EYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWV 163 (299)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHH
Confidence 34455555555554 58889988554 222 22222 2555544 33334555544 344
Q ss_pred H-hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC--------------------CC-CCCC---CCCCchh
Q 022892 127 A-KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT--------------------MF-GYND---LIVDPRN 181 (290)
Q Consensus 127 a-~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs--------------------~~-~y~~---~~~dL~~ 181 (290)
. .+++||.+|-... .+++.+.++.+.+.|-.-|++..+.. .+ +|.- ..+.++.
T Consensus 164 ~~~~~~Pv~vKl~~~--~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~ 241 (299)
T cd02940 164 REAVKIPVIAKLTPN--ITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRA 241 (299)
T ss_pred HHhcCCCeEEECCCC--chhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHH
Confidence 2 3579999997754 56777788888888877777543221 11 1211 1234778
Q ss_pred HHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 182 LEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 182 i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+..+++ . ++||+.+..=. . ..-+...+.+||++++|=+-+
T Consensus 242 v~~~~~~~~~~ipIig~GGI~----------------~------~~da~~~l~aGA~~V~i~ta~ 284 (299)
T cd02940 242 VSQIARAPEPGLPISGIGGIE----------------S------WEDAAEFLLLGASVVQVCTAV 284 (299)
T ss_pred HHHHHHhcCCCCcEEEECCCC----------------C------HHHHHHHHHcCCChheEceee
Confidence 888888 7 79998743211 1 223444567999988876543
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.15 Score=46.71 Aligned_cols=191 Identities=15% Similarity=0.157 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
...+.|+++.+ .|++.+.....+.+. .+. ...+..+++++++.++|+.. =+.+.++++.+.. .+
T Consensus 31 dp~~~a~~~~~----~G~~~l~v~Dl~~~~-------~~~--~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga 97 (254)
T TIGR00735 31 DPVELAQRYDE----EGADELVFLDITASS-------EGR--TTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGA 97 (254)
T ss_pred CHHHHHHHHHH----cCCCEEEEEcCCccc-------ccC--hhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCC
Confidence 35677887766 599887765444210 111 34578888898889999888 7888888888777 69
Q ss_pred ceecccCCccCCHHHHHHHHhc-C-CeEEEeC----C---------------CCCCHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 108 DIIQIPAFLCRQTDLLVAAAKT-G-KIINIKK----G---------------QFCASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~~-~-~PVilst----G---------------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
+.+.||+..+.|.++++++.+. + .-|+++- | ...+..+....++.+...|-..+++ +.
T Consensus 98 ~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iiv-t~ 176 (254)
T TIGR00735 98 DKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILL-TS 176 (254)
T ss_pred CEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEE-eC
Confidence 9999999999999999987643 2 1233332 2 1112344555566677777765555 33
Q ss_pred cCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CCEEEEeeeCC
Q 022892 167 GTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVHDD 244 (290)
Q Consensus 167 gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G-A~G~~IEkH~t 244 (290)
..+-++. .-.|+..+..+++ .++||+.-..-. . +.-...+...| ++|+++=+-+
T Consensus 177 i~~~g~~-~g~~~~~~~~i~~~~~ipvia~GGi~-----------------s-----~~di~~~~~~g~~dgv~~g~a~- 232 (254)
T TIGR00735 177 MDKDGTK-SGYDLELTKAVSEAVKIPVIASGGAG-----------------K-----PEHFYEAFTKGKADAALAASVF- 232 (254)
T ss_pred cCcccCC-CCCCHHHHHHHHHhCCCCEEEeCCCC-----------------C-----HHHHHHHHHcCCcceeeEhHHH-
Confidence 3322231 2357777788887 789998721111 1 22333556667 9998886554
Q ss_pred CCCCCCCCCCCCChHHHHHHHH
Q 022892 245 PLNAPVDGPTQWPLRNLEELLE 266 (290)
Q Consensus 245 ~dka~~D~~~sl~p~~l~~lv~ 266 (290)
|...++++++.+.++
T Consensus 233 -------~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 233 -------HYREITIGEVKEYLA 247 (254)
T ss_pred -------hCCCCCHHHHHHHHH
Confidence 334566667666554
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.14 Score=45.53 Aligned_cols=181 Identities=15% Similarity=0.132 Sum_probs=109.3
Q ss_pred CCeEEEEccCCc-------cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC
Q 022892 15 EPFFLLAGPNVI-------ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD 87 (290)
Q Consensus 15 ~~~~iIAgpcsi-------en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G 87 (290)
+++.||||.--- .+.....++|++..+ .|++++.-...+. .|. ..++.++.+++..+
T Consensus 9 ~~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~----~GA~~l~v~~~~~-------~~~-----g~~~~~~~i~~~v~ 72 (217)
T cd00331 9 GGLGVIAEVKRASPSKGLIREDFDPVEIAKAYEK----AGAAAISVLTEPK-------YFQ-----GSLEDLRAVREAVS 72 (217)
T ss_pred CCceEEEEecCCCCCCCcCCCCCCHHHHHHHHHH----cCCCEEEEEeCcc-------ccC-----CCHHHHHHHHHhcC
Confidence 468999986542 122346788888777 5999885543321 121 22345555555568
Q ss_pred CcEEEe--ecCcccHHHHhh-hcceecccCCccCC---HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 88 IPIVTD--VHETVQCEEVGK-VADIIQIPAFLCRQ---TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 88 i~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~~n---~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
+|+..- +.++.+++.+.+ .+|.+-++..++.. .++++++...+.-+++... +.+|+..+.+ .|...+
T Consensus 73 iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~---~~~e~~~~~~----~g~~~i 145 (217)
T cd00331 73 LPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVH---DEEELERALA----LGAKII 145 (217)
T ss_pred CCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHH----cCCCEE
Confidence 898853 244456777766 69999999888764 2445555567777666553 7888776644 455444
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
. +. +.. ......|+..+..+++ . ++||+. ..-- + . +.-...+..+||+|++
T Consensus 146 ~-~t-~~~--~~~~~~~~~~~~~l~~~~~~~~pvia-~gGI--------------~--s-----~edi~~~~~~Ga~gvi 199 (217)
T cd00331 146 G-IN-NRD--LKTFEVDLNTTERLAPLIPKDVILVS-ESGI--------------S--T-----PEDVKRLAEAGADAVL 199 (217)
T ss_pred E-Ee-CCC--ccccCcCHHHHHHHHHhCCCCCEEEE-EcCC--------------C--C-----HHHHHHHHHcCCCEEE
Confidence 3 33 211 1122356667777765 3 578765 1111 0 1 2344566788999999
Q ss_pred EeeeCC
Q 022892 239 MEVHDD 244 (290)
Q Consensus 239 IEkH~t 244 (290)
+=+.++
T Consensus 200 vGsai~ 205 (217)
T cd00331 200 IGESLM 205 (217)
T ss_pred ECHHHc
Confidence 988874
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.021 Score=54.04 Aligned_cols=138 Identities=12% Similarity=0.068 Sum_probs=93.9
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.|+++.++-+..++-.+||.-++..+++ ..+.+.++|..+.. +.+|.| -.|.- +++|+...++.|..
T Consensus 8 ~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~-------~~lG~P---D~g~l-~~~e~~~~~~~I~~- 75 (292)
T PRK11320 8 RFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAA-------ASLGLP---DLGIT-TLDDVLIDVRRITD- 75 (292)
T ss_pred HHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHh-------HhcCCC---CCCCC-CHHHHHHHHHHHHh-
Confidence 4777777777888889999999988877 68888888876543 344777 33544 88888887776621
Q ss_pred CCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCE
Q 022892 157 GNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 236 (290)
Q Consensus 157 Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G 236 (290)
..++||++|.+.+- |...-+....+.-..+||.|
T Consensus 76 ------------------------------~~~iPviaD~d~Gy----------------G~~~~v~r~V~~~~~aGaag 109 (292)
T PRK11320 76 ------------------------------ACDLPLLVDIDTGF----------------GGAFNIARTVKSMIKAGAAA 109 (292)
T ss_pred ------------------------------ccCCCEEEECCCCC----------------CCHHHHHHHHHHHHHcCCeE
Confidence 13589999999884 33333444566667899999
Q ss_pred EEEeeeCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 237 VFMEVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 237 ~~IEkH~t~dka~-~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
+.||-...|.|.- ..++.-.++ +++++.|+.+..+..
T Consensus 110 i~IEDq~~pK~cg~~~~~~lv~~---ee~~~kI~Aa~~a~~ 147 (292)
T PRK11320 110 VHIEDQVGAKRCGHRPNKEIVSQ---EEMVDRIKAAVDART 147 (292)
T ss_pred EEEecCCCccccCCCCCCcccCH---HHHHHHHHHHHHhcc
Confidence 9999887775532 123333344 455666666655543
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.08 Score=50.88 Aligned_cols=188 Identities=11% Similarity=0.080 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEecccccc-CCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee--cCcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDK-ANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV--HETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k-~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~--~d~~~~~~l~ 104 (290)
+.++..+++++|.+ +|++.|=...-.- ...+..+.|....-.+.++.+.+.+...-+..+..| .+.+.++...
T Consensus 22 ~~~~~~~ia~~Ld~----aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~ 97 (333)
T TIGR03217 22 TIEQVRAIAAALDE----AGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAY 97 (333)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHH
Confidence 56777888888877 5999875531100 000000112111112333444433333222223322 3556677766
Q ss_pred h-hcceecccCCccCC---HHHHHHHHhcCCeEE--EeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC
Q 022892 105 K-VADIIQIPAFLCRQ---TDLLVAAAKTGKIIN--IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD 178 (290)
Q Consensus 105 ~-~~d~~kIgs~~~~n---~~lL~~~a~~~~PVi--lstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d 178 (290)
+ .++++-|+...... .+.++.+-+.|.-|. +......+++++.+.++.+.+.|-+.|.|+...... +|. ++-
T Consensus 98 ~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~-~P~-~v~ 175 (333)
T TIGR03217 98 DAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAM-LPD-DVR 175 (333)
T ss_pred HCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCC-CHH-HHH
Confidence 6 69998887653321 134444555677553 333334489999999999999998888887766532 222 222
Q ss_pred chhHHHHHh-cC--CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 179 PRNLEWMRE-AN--CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 179 L~~i~~lk~-~~--~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+-+..+++ .+ +||+| +.|-+ .| +...-+.+|+..||+ .|+.-+
T Consensus 176 -~~v~~l~~~l~~~i~ig~-H~Hnn---------------lG---la~ANslaAi~aGa~--~iD~Sl 221 (333)
T TIGR03217 176 -DRVRALKAVLKPETQVGF-HAHHN---------------LS---LAVANSIAAIEAGAT--RIDASL 221 (333)
T ss_pred -HHHHHHHHhCCCCceEEE-EeCCC---------------Cc---hHHHHHHHHHHhCCC--EEEeec
Confidence 34556666 55 89999 77764 12 224557788999998 666554
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.5 Score=42.52 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEE-eecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVT-DVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s-~~~d~~~~~~l~~ 105 (290)
+.+..++.++.|++ .|+.++-.. |+. ...++.+++++++++ +.+-. |+.++++++.+.+
T Consensus 18 ~~e~a~~~~~al~~----~Gi~~iEit------------~~t---~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~ 78 (204)
T TIGR01182 18 DVDDALPLAKALIE----GGLRVLEVT------------LRT---PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVD 78 (204)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEe------------CCC---ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH
Confidence 66788888888888 588876543 111 234555666666654 55544 9999999999887
Q ss_pred -hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC-chhHH
Q 022892 106 -VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD-PRNLE 183 (290)
Q Consensus 106 -~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d-L~~i~ 183 (290)
..+|+-=+. .|.++++.+-+.+.|++= |.. |+.|+..|.+ .|.+-+=+ ||...+. ..-+.
T Consensus 79 aGA~FivsP~---~~~~v~~~~~~~~i~~iP--G~~-TptEi~~A~~----~Ga~~vKl--------FPA~~~GG~~yik 140 (204)
T TIGR01182 79 AGAQFIVSPG---LTPELAKHAQDHGIPIIP--GVA-TPSEIMLALE----LGITALKL--------FPAEVSGGVKMLK 140 (204)
T ss_pred cCCCEEECCC---CCHHHHHHHHHcCCcEEC--CCC-CHHHHHHHHH----CCCCEEEE--------CCchhcCCHHHHH
Confidence 689885554 388999998889998886 888 9999999865 56654444 3443343 45677
Q ss_pred HHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCC
Q 022892 184 WMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP 249 (290)
Q Consensus 184 ~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~ 249 (290)
.|+. + ++|++ ++=++ . ..-...-.++|+.++.+=+.+.+....
T Consensus 141 al~~plp~i~~~--ptGGV----------------~-----~~N~~~~l~aGa~~vg~Gs~L~~~~~~ 185 (204)
T TIGR01182 141 ALAGPFPQVRFC--PTGGI----------------N-----LANVRDYLAAPNVACGGGSWLVPKDLI 185 (204)
T ss_pred HHhccCCCCcEE--ecCCC----------------C-----HHHHHHHHhCCCEEEEEChhhcCchhh
Confidence 7776 4 56664 33322 1 222334578899988888888764443
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.37 Score=42.18 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEE-EeecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIV-TDVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~-s~~~d~~~~~~l~~ 105 (290)
+.+..+++++.+.+ .|+++|-.. ++. ..+++.+++++++++ +.+- -++++.++++.+.+
T Consensus 14 ~~~~~~~~~~~l~~----~G~~~vev~------------~~~---~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~ 74 (190)
T cd00452 14 DAEDALALAEALIE----GGIRAIEIT------------LRT---PGALEAIRALRKEFPEALIGAGTVLTPEQADAAIA 74 (190)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEEe------------CCC---hhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH
Confidence 56677777777776 599876543 111 235557777777776 4433 38899999999887
Q ss_pred -hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHH
Q 022892 106 -VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEW 184 (290)
Q Consensus 106 -~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~ 184 (290)
..+++-.|.. +.++++.+-..+.|++. |.+ |++|+..|.+ .|-+.+-+ |+.+. .-...+..
T Consensus 75 ~Ga~~i~~p~~---~~~~~~~~~~~~~~~i~--gv~-t~~e~~~A~~----~Gad~i~~------~p~~~--~g~~~~~~ 136 (190)
T cd00452 75 AGAQFIVSPGL---DPEVVKAANRAGIPLLP--GVA-TPTEIMQALE----LGADIVKL------FPAEA--VGPAYIKA 136 (190)
T ss_pred cCCCEEEcCCC---CHHHHHHHHHcCCcEEC--CcC-CHHHHHHHHH----CCCCEEEE------cCCcc--cCHHHHHH
Confidence 6888876653 56787777778888886 777 9999998864 57655554 22222 24556677
Q ss_pred HHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 185 MRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 185 lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+++ + ++|++. . +|.. ..-.....+.|++|+.+=.-++
T Consensus 137 l~~~~~~~p~~a--~------------------GGI~---~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 137 LKGPFPQVRFMP--T------------------GGVS---LDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHhhCCCCeEEE--e------------------CCCC---HHHHHHHHHCCCEEEEEchhcc
Confidence 776 5 588765 1 1210 2334455778999877665554
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.09 Score=52.60 Aligned_cols=208 Identities=18% Similarity=0.141 Sum_probs=126.7
Q ss_pred hhHHhhhc-CCCCeEEEEccCCccCHHHHHHHHHHH-----HHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH
Q 022892 5 TALFNQLK-AAEPFFLLAGPNVIESEEHIMRMAKHI-----KSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI 78 (290)
Q Consensus 5 ~~~~~~i~-~~~~~~iIAgpcsien~~~~le~Ak~L-----~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~ 78 (290)
|.||+-=+ .-+|+-|.++++-.-+.+...+.++++ .+..+++++|+|-...-. + . .+.+.+
T Consensus 79 tvL~rhe~tf~np~~Ia~eI~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s-----------~-d-p~~v~~ 145 (450)
T PRK04165 79 TVLYRHEKTFFNPTGIAVDVSDTMDDEEIDARLKKINNFQFERVGEILKLDMVALRNAS-----------G-D-PEKFAK 145 (450)
T ss_pred ceeeecCcCCCCCCEEEEEEeCCCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCC-----------C-C-HHHHHH
Confidence 45555433 357778888986644567777777777 443344458887654211 0 1 233444
Q ss_pred -HHHHHHhcCCcEEEeecCcccHHHHhh-hcc-eecccCCccCCHHHH-HHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 79 -LEKVKIAYDIPIVTDVHETVQCEEVGK-VAD-IIQIPAFLCRQTDLL-VAAAKTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 79 -L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d-~~kIgs~~~~n~~lL-~~~a~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
++++.+..++|+.-+-+|++.++...+ ..+ .--|.|-+..|++-+ ..+.+.+.||+++.. .++...+.++.+.
T Consensus 146 ~Vk~V~~~~dvPLSIDT~dpevleaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~---dl~~L~~lv~~~~ 222 (450)
T PRK04165 146 AVKKVAETTDLPLILCSEDPAVLKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKAP---NLEELKELVEKLQ 222 (450)
T ss_pred HHHHHHHhcCCCEEEeCCCHHHHHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEch---hHHHHHHHHHHHH
Confidence 445555589999999999998888766 334 223444445677644 445667999999553 3888888999999
Q ss_pred HcCCCcEEEEeecCC-CCCCCCCCCchhHHHH---H---hcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHH
Q 022892 155 LAGNPNVMVCERGTM-FGYNDLIVDPRNLEWM---R---EANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIAR 227 (290)
Q Consensus 155 ~~Gn~~i~L~~~gs~-~~y~~~~~dL~~i~~l---k---~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~ 227 (290)
+.|-.+ +++.-+.. +.+.- -|+..+..+ + .+++|++..++... . ++-..++..
T Consensus 223 ~~GI~d-IILDPg~ggf~ksl--~~~~~iRr~Al~~~~~~lgyPil~~~s~k~---------------~--~~~~~E~~~ 282 (450)
T PRK04165 223 AAGIKD-LVLDPGTENIKETL--DDFVQIRRAAIKKGDRPLGYPIIAFPIEAW---------------M--SDPMKEAAI 282 (450)
T ss_pred HcCCCc-EEECCCCchhhhhH--HHHHHHHhhhhhcccccCCCCEEEcchhhc---------------c--cchHHHHHH
Confidence 999855 45566553 43322 123333333 2 26889988666431 0 122233333
Q ss_pred HH--HHcCCCEEEEeeeCCCCCCC
Q 022892 228 TA--IAVGVDGVFMEVHDDPLNAP 249 (290)
Q Consensus 228 aA--va~GA~G~~IEkH~t~dka~ 249 (290)
|+ ++.||+ +||=.|+++...+
T Consensus 283 As~~~~kya~-i~Vl~~~~~~~~~ 305 (450)
T PRK04165 283 ASTLIAKYAD-ILVLHDIEPWELL 305 (450)
T ss_pred HHHHHHhCCc-EEEEcCCCHHHHh
Confidence 33 567887 8888888665543
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.43 Score=41.54 Aligned_cols=169 Identities=18% Similarity=0.185 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccc-cccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEE--eecCcc--cHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSS-FDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVT--DVHETV--QCE 101 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~-~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s--~~~d~~--~~~ 101 (290)
|.+..++.++.|.+ +++++.... |. . ..|++.++.+.+. .++++.. .+.++. .++
T Consensus 11 ~~~~~~~~~~~l~~-----~i~~ieig~~~~----------~----~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~ 71 (202)
T cd04726 11 DLEEALELAKKVPD-----GVDIIEAGTPLI----------K----SEGMEAVRALREAFPDKIIVADLKTADAGALEAE 71 (202)
T ss_pred CHHHHHHHHHHhhh-----cCCEEEcCCHHH----------H----HhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHH
Confidence 67788888888877 477777631 11 1 2334445555443 3666666 666664 345
Q ss_pred HHhh-hcceecccCCccC--CHHHHHHHHhcCCeEEEe-CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCC
Q 022892 102 EVGK-VADIIQIPAFLCR--QTDLLVAAAKTGKIINIK-KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLI 176 (290)
Q Consensus 102 ~l~~-~~d~~kIgs~~~~--n~~lL~~~a~~~~PVils-tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~ 176 (290)
.+.+ .+|++-+...... ...+++++.+.++++++. -+.. |.+|+..+.. .|- +.++++-+... .+. ..
T Consensus 72 ~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~-t~~e~~~~~~----~~~-d~v~~~~~~~~~~~~-~~ 144 (202)
T cd04726 72 MAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVE-DPEKRAKLLK----LGV-DIVILHRGIDAQAAG-GW 144 (202)
T ss_pred HHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCC-CHHHHHHHHH----CCC-CEEEEcCcccccccC-CC
Confidence 5555 6999988765532 245777777889999986 4555 8888876432 344 45555432110 011 11
Q ss_pred CCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCC
Q 022892 177 VDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 177 ~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~ 245 (290)
.....+..+++ .++||..+. |.+ +.-...+...||+|+++=+.++.
T Consensus 145 ~~~~~i~~~~~~~~~~i~~~G--------------------GI~---~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 145 WPEDDLKKVKKLLGVKVAVAG--------------------GIT---PDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred CCHHHHHHHHhhcCCCEEEEC--------------------CcC---HHHHHHHHhcCCCEEEEeehhcC
Confidence 23456666666 678998742 211 33455677889999999998853
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.075 Score=48.99 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCC-CCcccCCCCChhHHHHHHHHHHHh-cCCcEEEe----ecCcccHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANR-TSSKSFRGPGMVEGLKILEKVKIA-YDIPIVTD----VHETVQCE 101 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~r-ts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s~----~~d~~~~~ 101 (290)
+.+...++++.|.+ +|++.+=..+-....- +..+.|... ..++.++++.+. .+..+..- ..+.+.++
T Consensus 20 ~~~~k~~i~~~L~~----~Gv~~iEvg~~~~~~~~~~~~~~~~~---~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~ 92 (263)
T cd07943 20 TLEQVRAIARALDA----AGVPLIEVGHGDGLGGSSLNYGFAAH---TDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLK 92 (263)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEeecCCCCCCcccccCCCCC---ChHHHHHHHHHhccCCEEEEEecCCccCHHHHH
Confidence 67778888888888 5998875542110000 000112211 233344444322 24444322 34566677
Q ss_pred HHhh-hcceecccCCccC--C-HHHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC
Q 022892 102 EVGK-VADIIQIPAFLCR--Q-TDLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL 175 (290)
Q Consensus 102 ~l~~-~~d~~kIgs~~~~--n-~~lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~ 175 (290)
...+ .++++.|...... + .+.++.+-..|+-|.+. .....+++++.+.++.+.+.|-+.|.|+...+.. +|.
T Consensus 93 ~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~-~P~- 170 (263)
T cd07943 93 MAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSAGAM-LPD- 170 (263)
T ss_pred HHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCc-CHH-
Confidence 7666 6888877543322 1 23445555667766444 3444489999999999999998877777665531 332
Q ss_pred CCCchhHHHHHh-cCC-CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 176 IVDPRNLEWMRE-ANC-PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 176 ~~dL~~i~~lk~-~~~-pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
++. +-+..+++ ++. |+++ +.|-+ +.+...-+.+|+.+||+ .|+.-+
T Consensus 171 ~v~-~lv~~l~~~~~~~~l~~-H~Hn~------------------~GlA~AN~laAi~aGa~--~vd~s~ 218 (263)
T cd07943 171 DVR-ERVRALREALDPTPVGF-HGHNN------------------LGLAVANSLAAVEAGAT--RIDGSL 218 (263)
T ss_pred HHH-HHHHHHHHhCCCceEEE-EecCC------------------cchHHHHHHHHHHhCCC--EEEeec
Confidence 122 34556676 676 9999 88864 22335557788999998 777665
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.43 Score=44.88 Aligned_cols=219 Identities=14% Similarity=0.076 Sum_probs=118.9
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCC---c------c------cCCCCChhH
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTS---S------K------SFRGPGMVE 74 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts---~------~------~~~g~~~~~ 74 (290)
.+...+|+.+=+|+.. ...+..+++.+ +|+-+|.-.+...+|+.. | . .|...|++.
T Consensus 5 Gl~l~nPi~~Asg~~~-----~~~e~~~~~~~----~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~ 75 (294)
T cd04741 5 GLTISPPLMNAAGPWC-----TTLEDLLELAA----SSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDY 75 (294)
T ss_pred CeeCCCCCEECCCCCC-----CCHHHHHHHHH----cCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHH
Confidence 4566788777778843 12344445444 476655444444334321 1 0 133344456
Q ss_pred HHHHHHHHHHh---cCCcEEEeecCcccHHHH------hh----hcceecc--------cCCcc-CCHHHH----HHHH-
Q 022892 75 GLKILEKVKIA---YDIPIVTDVHETVQCEEV------GK----VADIIQI--------PAFLC-RQTDLL----VAAA- 127 (290)
Q Consensus 75 ~l~~L~~~~~~---~Gi~~~s~~~d~~~~~~l------~~----~~d~~kI--------gs~~~-~n~~lL----~~~a- 127 (290)
.++.+++..++ .+.|++.+++-. .-+++ .+ .+|++-| +.+.+ .+.+.+ +++.
T Consensus 76 ~~~~i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~ 154 (294)
T cd04741 76 YLEYIRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKA 154 (294)
T ss_pred HHHHHHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHH
Confidence 66677765543 689999999864 21211 11 1344433 22222 245444 4443
Q ss_pred hcCCeEEEeCCCCCCHHHHHHHHHHHHHc--CCCcEEEE---------e--ecC-----C--C-CCCC---CCCCchhHH
Q 022892 128 KTGKIINIKKGQFCASSVMVNSAEKVRLA--GNPNVMVC---------E--RGT-----M--F-GYND---LIVDPRNLE 183 (290)
Q Consensus 128 ~~~~PVilstG~~~tl~e~~~Ave~i~~~--Gn~~i~L~---------~--~gs-----~--~-~y~~---~~~dL~~i~ 183 (290)
.+.+||++|-....+.+++.++++.+... |-.-+++. | +.. . | ++.- ..+.|+.+.
T Consensus 155 ~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~ 234 (294)
T cd04741 155 AYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVR 234 (294)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHH
Confidence 35799999999987888888888888776 54445543 2 221 0 1 1110 112345566
Q ss_pred HHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHH
Q 022892 184 WMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRN 260 (290)
Q Consensus 184 ~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~ 260 (290)
.+++ . ++||+....= ..+ .-+...+.+||++++|=+-+ ..-.|.-
T Consensus 235 ~~~~~~~~~ipIig~GGI----------------~s~------~da~e~l~aGA~~Vqv~ta~----------~~~gp~~ 282 (294)
T cd04741 235 TFRRLLPSEIQIIGVGGV----------------LDG------RGAFRMRLAGASAVQVGTAL----------GKEGPKV 282 (294)
T ss_pred HHHHhcCCCCCEEEeCCC----------------CCH------HHHHHHHHcCCCceeEchhh----------hhcCchH
Confidence 6766 5 4898762111 112 22334456899987765432 1125677
Q ss_pred HHHHHHHHHH
Q 022892 261 LEELLEELVA 270 (290)
Q Consensus 261 l~~lv~~ir~ 270 (290)
++++.+.+++
T Consensus 283 ~~~i~~~L~~ 292 (294)
T cd04741 283 FARIEKELED 292 (294)
T ss_pred HHHHHHHHHh
Confidence 8888777665
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.37 Score=40.46 Aligned_cols=168 Identities=17% Similarity=0.195 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHH-------HHh
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCE-------EVG 104 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~-------~l~ 104 (290)
..+.++.+. +.|+++|........++... ....+.+.+.++..++++....+.....+ .+.
T Consensus 14 ~~~~~~~~~----~~G~~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 81 (200)
T cd04722 14 PVELAKAAA----EAGADAIIVGTRSSDPEEAE--------TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAAR 81 (200)
T ss_pred HHHHHHHHH----cCCCCEEEEeeEEECcccCC--------CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHH
Confidence 344554444 46999988776553222210 01114567777788999888776533332 444
Q ss_pred h-hcceecccCCccC----CHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CCCCCCC
Q 022892 105 K-VADIIQIPAFLCR----QTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-FGYNDLI 176 (290)
Q Consensus 105 ~-~~d~~kIgs~~~~----n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~~y~~~~ 176 (290)
+ .+|++.|...... -..+++++.+. +.||+++.......++.. +...|- ..+.++.+.. .......
T Consensus 82 ~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~-----~~~~g~-d~i~~~~~~~~~~~~~~~ 155 (200)
T cd04722 82 AAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAA-----AEEAGV-DEVGLGNGGGGGGGRDAV 155 (200)
T ss_pred HcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhh-----HHHcCC-CEEEEcCCcCCCCCccCc
Confidence 4 6899999988864 34566777665 899999987653322211 334453 4455544431 1111110
Q ss_pred -CCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 177 -VDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 177 -~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
..+..+..++. .++||+.+..=. . +.-+..++..||+|+++
T Consensus 156 ~~~~~~~~~~~~~~~~pi~~~GGi~-----------------~-----~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 156 PIADLLLILAKRGSKVPVIAGGGIN-----------------D-----PEDAAEALALGADGVIV 198 (200)
T ss_pred hhHHHHHHHHHhcCCCCEEEECCCC-----------------C-----HHHHHHHHHhCCCEEEe
Confidence 01233444445 688998732111 0 23344566679998875
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.19 Score=46.41 Aligned_cols=178 Identities=15% Similarity=0.165 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
...+.|+++.+ .|++-+...-.+. . -.+- ...+..+++++++.++|+.. -+.+.+++..+.+ .+
T Consensus 31 dp~~~a~~~~~----~g~~~l~i~Dl~~---~----~~~~--~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~ 97 (258)
T PRK01033 31 DPINAVRIFNE----KEVDELIVLDIDA---S----KRGS--EPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGV 97 (258)
T ss_pred CHHHHHHHHHH----cCCCEEEEEECCC---C----cCCC--cccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCC
Confidence 45788888887 4887766554442 1 0011 24477888888888999866 4667777766665 58
Q ss_pred ceecccCCccCCHHHHHHHHhc-C---CeEE--EeCC------------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAKT-G---KIIN--IKKG------------QFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~~-~---~PVi--lstG------------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
+.+-||+....+..+++++++. + .+|- +++| ...+..+....++.+...|-..+++..+...
T Consensus 98 ~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~ 177 (258)
T PRK01033 98 EKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRD 177 (258)
T ss_pred CEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCC
Confidence 9999999999999999887642 2 2222 2333 0111122233444555667666666533221
Q ss_pred CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH-HcCCCEEEEee--eCCC
Q 022892 170 FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI-AVGVDGVFMEV--HDDP 245 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAv-a~GA~G~~IEk--H~t~ 245 (290)
-.|.- .|+..+..+++ .++||++...-. . . ..+. .+. ..|++|+++=+ ||+-
T Consensus 178 G~~~G--~d~~~i~~~~~~~~ipvIasGGv~-----------------s---~-eD~~-~l~~~~GvdgVivg~a~~~~~ 233 (258)
T PRK01033 178 GTMKG--YDLELLKSFRNALKIPLIALGGAG-----------------S---L-DDIV-EAILNLGADAAAAGSLFVFKG 233 (258)
T ss_pred CCcCC--CCHHHHHHHHhhCCCCEEEeCCCC-----------------C---H-HHHH-HHHHHCCCCEEEEcceeeeCc
Confidence 11222 37888888888 789998722211 1 1 2333 334 68999999985 6653
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.8 Score=46.51 Aligned_cols=218 Identities=15% Similarity=0.112 Sum_probs=125.6
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHH-HHHHHhcCCcEEEee
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKIL-EKVKIAYDIPIVTDV 94 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L-~~~~~~~Gi~~~s~~ 94 (290)
|+-|+||+--....+...+.|+++.+ .|||+|=-..-. .|. + .+-+.+. +.+....++++.-+-
T Consensus 151 ~~~v~aEI~~a~~l~~i~~~A~~~~~----~GADIIDIG~~s--t~p--------~-~~~v~~~V~~l~~~~~~pISIDT 215 (499)
T TIGR00284 151 PLRVVAEIPPTVAEDGIEGLAARMER----DGADMVALGTGS--FDD--------D-PDVVKEKVKTALDALDSPVIADT 215 (499)
T ss_pred CeEEEEEEcCCcchHHHHHHHHHHHH----CCCCEEEECCCc--CCC--------c-HHHHHHHHHHHHhhCCCcEEEeC
Confidence 46799998654455667888888877 599998665322 111 1 2234443 333344599999999
Q ss_pred cCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCC-CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 95 HETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQ-FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 95 ~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~-~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
++++.++...+ .+|++-=-+.. +.-.++..+++.+.|+++-... ....+.....++.+.+.|-++ +++..|..+
T Consensus 216 ~~~~v~eaAL~aGAdiINsVs~~-~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~-IIlDPglg~-- 291 (499)
T TIGR00284 216 PTLDELYEALKAGASGVIMPDVE-NAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSK-VAADPSLSP-- 291 (499)
T ss_pred CCHHHHHHHHHcCCCEEEECCcc-chhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCc-EEEeCCCCc--
Confidence 99999988765 57765422222 2224666677888877765433 335688888899999988765 677887653
Q ss_pred CCCCCCchhHHHH---Hh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCC
Q 022892 173 NDLIVDPRNLEWM---RE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA 248 (290)
Q Consensus 173 ~~~~~dL~~i~~l---k~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka 248 (290)
.+.. -++.+..+ |+ +++|+.+-.+.-..... ..+.++ -..++..|..+||+ +|=.|-.-+|+
T Consensus 292 ~~~~-l~~sL~~l~~~r~~~~~Pil~GvSNvtel~d-------aDs~g~----naal~~~a~e~Ga~--ilrvhd~S~k~ 357 (499)
T TIGR00284 292 PLLG-LLESIIRFRRASRLLNVPLVFGAANVTELVD-------ADSHGV----NALLAAIALEAGAS--ILYVVEDSYKS 357 (499)
T ss_pred chHH-HHHHHHHHHHHHHhcCCcEEEeeccccCCCc-------cchhHH----HHHHHHHHHHcCCC--EEEEcCCcccc
Confidence 1110 13344444 44 78897553332211100 011111 12233456778998 78888533333
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHH
Q 022892 249 PVDGPTQWPLRNLEELLEELVAIA 272 (290)
Q Consensus 249 ~~D~~~sl~p~~l~~lv~~ir~~~ 272 (290)
. -...|+++-++....+.
T Consensus 358 r------~sV~E~~~A~~m~~~~~ 375 (499)
T TIGR00284 358 Y------RSTAEAAEAAKMASAAR 375 (499)
T ss_pred c------ccHHHHHHHHHHHHHHH
Confidence 2 23445555555444443
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.23 Score=45.97 Aligned_cols=182 Identities=18% Similarity=0.158 Sum_probs=111.6
Q ss_pred CCCeEEEEccCCc-------cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc
Q 022892 14 AEPFFLLAGPNVI-------ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY 86 (290)
Q Consensus 14 ~~~~~iIAgpcsi-------en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~ 86 (290)
.+.+-||||..-. .......++|+...+ .||+++.- .|.+..|. ..+..++.+++..
T Consensus 47 ~~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~----~GA~aisv-------lte~~~f~-----g~~~~l~~v~~~v 110 (260)
T PRK00278 47 AGKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEA----GGAACLSV-------LTDERFFQ-----GSLEYLRAARAAV 110 (260)
T ss_pred cCCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHh----CCCeEEEE-------ecccccCC-----CCHHHHHHHHHhc
Confidence 3458999987532 111123566666555 79998832 23333233 2367777788888
Q ss_pred CCcEEEee--cCcccHHHHhh-hcceecccCCccCCH---HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCc
Q 022892 87 DIPIVTDV--HETVQCEEVGK-VADIIQIPAFLCRQT---DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 87 Gi~~~s~~--~d~~~~~~l~~-~~d~~kIgs~~~~n~---~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~ 160 (290)
.+|++.-= .++.+++.+.+ .+|++-+....+... .|++.+-..|+-+++... +.+|+..|.+ .|.+-
T Consensus 111 ~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh---~~~E~~~A~~----~gadi 183 (260)
T PRK00278 111 SLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVH---DEEELERALK----LGAPL 183 (260)
T ss_pred CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHH----cCCCE
Confidence 99999733 34455666655 699998888886542 466777788999998876 8888877653 46554
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
|.+-.|. ......|+.....+.. . ..+++. -+... . +.-+..+..+||+|+
T Consensus 184 Igin~rd----l~~~~~d~~~~~~l~~~~p~~~~vIa-egGI~----------------t-----~ed~~~~~~~Gad~v 237 (260)
T PRK00278 184 IGINNRN----LKTFEVDLETTERLAPLIPSDRLVVS-ESGIF----------------T-----PEDLKRLAKAGADAV 237 (260)
T ss_pred EEECCCC----cccccCCHHHHHHHHHhCCCCCEEEE-EeCCC----------------C-----HHHHHHHHHcCCCEE
Confidence 4332221 2223456666666655 2 235543 22211 1 444556678899999
Q ss_pred EEeeeCC
Q 022892 238 FMEVHDD 244 (290)
Q Consensus 238 ~IEkH~t 244 (290)
++=+-++
T Consensus 238 lVGsaI~ 244 (260)
T PRK00278 238 LVGESLM 244 (260)
T ss_pred EECHHHc
Confidence 9987765
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.12 Score=47.26 Aligned_cols=101 Identities=16% Similarity=0.098 Sum_probs=66.6
Q ss_pred cCCccCCHHHH----HHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhc
Q 022892 113 PAFLCRQTDLL----VAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREA 188 (290)
Q Consensus 113 gs~~~~n~~lL----~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~ 188 (290)
|+..+.|.+++ +++.+.++||.+|....-+ ++....++.+...|-.-+|+ + +. |+...+|+..+..++ .
T Consensus 118 G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~-~~~~~la~~l~~aG~d~ihv-~--~~--~~g~~ad~~~I~~i~-~ 190 (233)
T cd02911 118 GEALLKDPERLSEFIKALKETGVPVSVKIRAGVD-VDDEELARLIEKAGADIIHV-D--AM--DPGNHADLKKIRDIS-T 190 (233)
T ss_pred chHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC-cCHHHHHHHHHHhCCCEEEE-C--cC--CCCCCCcHHHHHHhc-C
Confidence 66677777655 4455678999999987755 67777778888888764444 2 22 222346777776665 5
Q ss_pred CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 189 NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 189 ~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
++||+.+.+=. . ..-+...+..||||++|=+=
T Consensus 191 ~ipVIgnGgI~-----------------s-----~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 191 ELFIIGNNSVT-----------------T-----IESAKEMFSYGADMVSVARA 222 (233)
T ss_pred CCEEEEECCcC-----------------C-----HHHHHHHHHcCCCEEEEcCC
Confidence 78998743322 1 34455667789999988543
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.39 Score=42.84 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe---------ec---CcccHH
Q 022892 34 RMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD---------VH---ETVQCE 101 (290)
Q Consensus 34 e~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~---------~~---d~~~~~ 101 (290)
+.+.++.+...+.|+.++... ++..++++.+..++|++-- +| +.++++
T Consensus 23 ~~~~~~a~a~~~~G~~~~~~~--------------------~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~ 82 (221)
T PRK01130 23 EIMAAMALAAVQGGAVGIRAN--------------------GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVD 82 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEcC--------------------CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHH
Confidence 344555555555798766532 1345555556678888611 21 123455
Q ss_pred HHhh-hcceecccCCc------cCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CC
Q 022892 102 EVGK-VADIIQIPAFL------CRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GY 172 (290)
Q Consensus 102 ~l~~-~~d~~kIgs~~------~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y 172 (290)
.+.+ .+|++-+.... .+...+++++.+ .+.|++... . |++|++.+ ...|-.-+.+-.+|... ..
T Consensus 83 ~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v--~-t~ee~~~a----~~~G~d~i~~~~~g~t~~~~ 155 (221)
T PRK01130 83 ALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADC--S-TLEEGLAA----QKLGFDFIGTTLSGYTEETK 155 (221)
T ss_pred HHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeC--C-CHHHHHHH----HHcCCCEEEcCCceeecCCC
Confidence 5555 68877776554 234577788877 788888654 3 88887654 34565433321222210 01
Q ss_pred CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.....++..+..+++ .++||+...-=. . +.-+..+.++||+|+++=+.+
T Consensus 156 ~~~~~~~~~i~~i~~~~~iPvia~GGI~-----------------t-----~~~~~~~l~~GadgV~iGsai 205 (221)
T PRK01130 156 KPEEPDFALLKELLKAVGCPVIAEGRIN-----------------T-----PEQAKKALELGAHAVVVGGAI 205 (221)
T ss_pred CCCCcCHHHHHHHHHhCCCCEEEECCCC-----------------C-----HHHHHHHHHCCCCEEEEchHh
Confidence 122345677788887 789997621110 1 334556778999999998665
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.24 Score=45.50 Aligned_cols=175 Identities=13% Similarity=0.123 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH-hcCCcEEEee-cCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI-AYDIPIVTDV-HETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~-~~Gi~~~s~~-~d~~~~~~l~~ 105 (290)
+.+...++++.|.+ +|++.|=... |. ++ +..++.++++.+ ..+..+.+-. .+++.++.+.+
T Consensus 18 ~~~~k~~i~~~L~~----~Gv~~iE~g~----p~--------~~-~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~ 80 (259)
T cd07939 18 SREEKLAIARALDE----AGVDEIEVGI----PA--------MG-EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALR 80 (259)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEec----CC--------CC-HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh
Confidence 56777888888877 5998875532 11 11 233344444443 2445554433 56777777665
Q ss_pred -hcceecccCCc--cCC---------------HHHHHHHHhcCCeEEEeCCC--CCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 106 -VADIIQIPAFL--CRQ---------------TDLLVAAAKTGKIINIKKGQ--FCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 106 -~~d~~kIgs~~--~~n---------------~~lL~~~a~~~~PVilstG~--~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
.++++.+.... ..+ .+.++.+-+.|..|.+.--. ..+++.+...++.+...|-..|.|+.
T Consensus 81 ~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~D 160 (259)
T cd07939 81 CGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFAD 160 (259)
T ss_pred CCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 57877664321 111 13445555677776654332 23799999999998888988888877
Q ss_pred ecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 166 RGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..... +|.. +- .-+..+++ +++|+++ +.|-. ..+...-+.+|+..||+ +|+.-+
T Consensus 161 T~G~~-~P~~-v~-~lv~~l~~~~~~~l~~-H~Hn~------------------~Gla~An~laAi~aG~~--~vd~s~ 215 (259)
T cd07939 161 TVGIL-DPFT-TY-ELIRRLRAATDLPLEF-HAHND------------------LGLATANTLAAVRAGAT--HVSVTV 215 (259)
T ss_pred CCCCC-CHHH-HH-HHHHHHHHhcCCeEEE-EecCC------------------CChHHHHHHHHHHhCCC--EEEEec
Confidence 65531 3321 22 34566777 7789999 77753 22235567789999998 777655
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.5 Score=43.76 Aligned_cols=188 Identities=16% Similarity=0.206 Sum_probs=106.2
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCccc-------------CCCCChhHHHHHHHHHH
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKS-------------FRGPGMVEGLKILEKVK 83 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~-------------~~g~~~~~~l~~L~~~~ 83 (290)
+|+.||=- |.+..++.++.|.+ .|+|++=.+. |.+.|-. -+|..+.+.+++++++.
T Consensus 6 ~yi~aG~P---~~e~~~~~~~~l~~----~Gad~iElGi----PfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r 74 (250)
T PLN02591 6 PYITAGDP---DLDTTAEALRLLDA----CGADVIELGV----PYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVA 74 (250)
T ss_pred EEEeCCCC---CHHHHHHHHHHHHH----CCCCEEEECC----CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 35666633 56778888888887 5999987664 3333320 12334457788899988
Q ss_pred HhcCCc-EEEeecCccc-------HHHHhh-hcceecccCCcc-CCHHHHHHHHhcCCe-EEEeCCCCCCHHHHHHHHHH
Q 022892 84 IAYDIP-IVTDVHETVQ-------CEEVGK-VADIIQIPAFLC-RQTDLLVAAAKTGKI-INIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 84 ~~~Gi~-~~s~~~d~~~-------~~~l~~-~~d~~kIgs~~~-~n~~lL~~~a~~~~P-VilstG~~~tl~e~~~Ave~ 152 (290)
++..+| ++-+-+++-- ++.+.+ .+|-+-|+---. ...++.+.+.+.+.. |.+=+... +.+-+...++.
T Consensus 75 ~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt-~~~ri~~ia~~ 153 (250)
T PLN02591 75 PQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTT-PTERMKAIAEA 153 (250)
T ss_pred cCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHh
Confidence 778888 4445555421 222223 466666663222 244566666777874 44544555 55555555442
Q ss_pred HHHcCCCcEEEEe-ecCCCCCC-CCCCCch-hHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 022892 153 VRLAGNPNVMVCE-RGTMFGYN-DLIVDPR-NLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 228 (290)
Q Consensus 153 i~~~Gn~~i~L~~-~gs~~~y~-~~~~dL~-~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~a 228 (290)
+.| -|-++- .|++ +-. ....++. .+..+|+ +++||.+-. ++ .. +.-+..
T Consensus 154 --~~g--FIY~Vs~~GvT-G~~~~~~~~~~~~i~~vk~~~~~Pv~vGF--GI---------------~~-----~e~v~~ 206 (250)
T PLN02591 154 --SEG--FVYLVSSTGVT-GARASVSGRVESLLQELKEVTDKPVAVGF--GI---------------SK-----PEHAKQ 206 (250)
T ss_pred --CCC--cEEEeeCCCCc-CCCcCCchhHHHHHHHHHhcCCCceEEeC--CC---------------CC-----HHHHHH
Confidence 222 343322 2221 211 1112333 3777788 789986611 11 11 344556
Q ss_pred HHHcCCCEEEEeeeC
Q 022892 229 AIAVGVDGVFMEVHD 243 (290)
Q Consensus 229 Ava~GA~G~~IEkH~ 243 (290)
....||||+++=+++
T Consensus 207 ~~~~GADGvIVGSal 221 (250)
T PLN02591 207 IAGWGADGVIVGSAM 221 (250)
T ss_pred HHhcCCCEEEECHHH
Confidence 788899999999988
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.3 Score=44.00 Aligned_cols=160 Identities=19% Similarity=0.296 Sum_probs=92.0
Q ss_pred HHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHH-HHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCcc
Q 022892 39 IKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKIL-EKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLC 117 (290)
Q Consensus 39 L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L-~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~ 117 (290)
+.+...++|.|+++-..-. +.. .+.+..+ +.+.+...+|++-+|-+..++- ..+|.+-++|=.-
T Consensus 16 ia~~v~~~gtDaI~VGGS~-----------gvt-~~~~~~~v~~ik~~~~lPvilfp~~~~~i~---~~aD~~~~~slln 80 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSL-----------GIV-ESNLDQTVKKIKKITNLPVILFPGNVNGLS---RYADAVFFMSLLN 80 (205)
T ss_pred HHHHHHhcCCCEEEEcCcC-----------CCC-HHHHHHHHHHHHhhcCCCEEEECCCccccC---cCCCEEEEEEeec
Confidence 4444455799999875321 122 3445444 4444448999999988777654 5677777776322
Q ss_pred -CCHHHH-----HHH---HhcCC---e---EEEeCCC------------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCC
Q 022892 118 -RQTDLL-----VAA---AKTGK---I---INIKKGQ------------FCASSVMVNSAEKVRLAGNPNVMVCERGTMF 170 (290)
Q Consensus 118 -~n~~lL-----~~~---a~~~~---P---VilstG~------------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~ 170 (290)
+|...+ +.+ .+.+. | +++--|. ...++|...-+......|-+.++| +.++.+
T Consensus 81 s~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~L-e~~sGa 159 (205)
T TIGR01769 81 SADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYL-EAGSGA 159 (205)
T ss_pred CCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEE-EcCCCC
Confidence 232221 112 22222 2 2332222 136677666666666678776666 444433
Q ss_pred CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 171 GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 171 ~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
.|+ +|...+..+|+ .++|+.+- +|.|. ...+..+...||||+++
T Consensus 160 ~~~---v~~e~i~~Vk~~~~~Pv~vG--------------------GGIrs--~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 160 SYP---VNPETISLVKKASGIPLIVG--------------------GGIRS--PEIAYEIVLAGADAIVT 204 (205)
T ss_pred CCC---CCHHHHHHHHHhhCCCEEEe--------------------CCCCC--HHHHHHHHHcCCCEEEe
Confidence 333 57788888888 78998771 12211 34555666789999875
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.5 Score=42.18 Aligned_cols=116 Identities=19% Similarity=0.121 Sum_probs=70.7
Q ss_pred cHHHHhh-hcceecccCCcc------CCHHHHHHHHhcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC
Q 022892 99 QCEEVGK-VADIIQIPAFLC------RQTDLLVAAAKTG-KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF 170 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~------~n~~lL~~~a~~~-~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~ 170 (290)
+++.+.+ .++++-+..... ...++++++.+.+ +|++... . |.+|...+. ..|-.-+.+.++|...
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v--~-t~~ea~~a~----~~G~d~i~~~~~g~t~ 156 (219)
T cd04729 84 EVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADI--S-TLEEALNAA----KLGFDIIGTTLSGYTE 156 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEEC--C-CHHHHHHHH----HcCCCEEEccCccccc
Confidence 5555555 588777755443 4456777777777 8888743 4 888876554 3565544333444211
Q ss_pred C-CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 171 G-YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 171 ~-y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
. ......++..+..+++ +++||+....=+ . +.-+..+.++||+|+++=+.+
T Consensus 157 ~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~-----------------~-----~~~~~~~l~~GadgV~vGsal 209 (219)
T cd04729 157 ETAKTEDPDFELLKELRKALGIPVIAEGRIN-----------------S-----PEQAAKALELGADAVVVGSAI 209 (219)
T ss_pred cccCCCCCCHHHHHHHHHhcCCCEEEeCCCC-----------------C-----HHHHHHHHHCCCCEEEEchHH
Confidence 0 1112245678888887 789998732111 1 344556788999999986655
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.085 Score=47.50 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=75.6
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecC----------cccHHH----Hhh-
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE----------TVQCEE----VGK- 105 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d----------~~~~~~----l~~- 105 (290)
+.+.+.|+++|..+.+.+ ... +. ...+.+..+.+.|+++|++++.+.+- ++.+.. ..+
T Consensus 83 ~~a~~~Ga~~v~~~~~~~-~~~----~~--~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~ 155 (235)
T cd00958 83 EDAVRLGADAVGVTVYVG-SEE----ER--EMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAEL 155 (235)
T ss_pred HHHHHCCCCEEEEEEecC-Cch----HH--HHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHH
Confidence 345567999988876654 111 10 12356778889999999999998754 344443 333
Q ss_pred hcceecccCCccCCHHHHHHHH-hcCCeEEEeCCCC-CCHHHHHHHHHHHHHcCCCcE
Q 022892 106 VADIIQIPAFLCRQTDLLVAAA-KTGKIINIKKGQF-CASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 106 ~~d~~kIgs~~~~n~~lL~~~a-~~~~PVilstG~~-~tl~e~~~Ave~i~~~Gn~~i 161 (290)
.+|++|++ . ..+.+.++++. ..+.||+++=|.. .|.++.+.-+..+...|-.-+
T Consensus 156 GaD~Ik~~-~-~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv 211 (235)
T cd00958 156 GADIVKTK-Y-TGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGV 211 (235)
T ss_pred CCCEEEec-C-CCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 68999996 2 34677778765 5678998887742 378877776676777776543
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.4 Score=46.39 Aligned_cols=235 Identities=19% Similarity=0.194 Sum_probs=115.7
Q ss_pred CchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHH
Q 022892 2 DPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEK 81 (290)
Q Consensus 2 ~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~ 81 (290)
|-||.+|.. .-+- +++|+.... -.+...++-.+|.+.|.++|...-.- +... .+....+.+.++.+++
T Consensus 49 d~s~~~~g~-~l~~-Pi~i~~MtG--gs~~~~~in~~La~~a~~~G~~~~~G-s~~~-------~~~~~~~~~~~~~vr~ 116 (352)
T PRK05437 49 DLSTEFLGK-KLSA-PFLINAMTG--GSEKAKEINRKLAEAAEELGIAMGVG-SQRA-------ALKDPELADSFSVVRK 116 (352)
T ss_pred cceeeECCc-eecC-CEEecccCC--CChhHHHHHHHHHHHHHHcCCCeEec-ccHh-------hccChhhHHHHHHHHH
Confidence 445666522 2233 466766654 33456777899999999999643221 1110 0110111233333333
Q ss_pred HHHhcCCcEEEeecC-------cccHHHHhh--hcceecccCCc---------cCCH----HHHHHHHh-cCCeEEEe-C
Q 022892 82 VKIAYDIPIVTDVHE-------TVQCEEVGK--VADIIQIPAFL---------CRQT----DLLVAAAK-TGKIINIK-K 137 (290)
Q Consensus 82 ~~~~~Gi~~~s~~~d-------~~~~~~l~~--~~d~~kIgs~~---------~~n~----~lL~~~a~-~~~PVils-t 137 (290)
+. -..||+..++= ++.+....+ ..|++.|.=.. -+++ +.++++.+ .+.||++| .
T Consensus 117 ~~--p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~ 194 (352)
T PRK05437 117 VA--PDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEV 194 (352)
T ss_pred HC--CCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 32 14555554433 333433333 25555554211 0233 34566544 48999999 4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CCC----CC---------CCCCCc---hhHHHHHh-c-CCCEEEeCCC
Q 022892 138 GQFCASSVMVNSAEKVRLAGNPNVMVCERGT-MFG----YN---------DLIVDP---RNLEWMRE-A-NCPVVADVTH 198 (290)
Q Consensus 138 G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~~~----y~---------~~~~dL---~~i~~lk~-~-~~pV~~D~sH 198 (290)
|...+.+++. .+...|-+-|.+--+|. ++- +. ..+..+ ..+..+++ . ++||+.+.
T Consensus 195 g~g~s~~~a~----~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~G-- 268 (352)
T PRK05437 195 GFGISKETAK----RLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASG-- 268 (352)
T ss_pred CCCCcHHHHH----HHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEEC--
Confidence 4444544444 34556765555422222 110 00 001112 24444444 2 68887742
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChH----HHHHHHHHHHHHHHH
Q 022892 199 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLR----NLEELLEELVAIAKV 274 (290)
Q Consensus 199 s~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~----~l~~lv~~ir~~~~~ 274 (290)
|.+.. .. +..++++||+++.+=+-+-- ++. .--++ -++.+.++++.+-..
T Consensus 269 ------------------GI~~~-~d-v~k~l~~GAd~v~ig~~~l~--~~~----~~g~~~v~~~i~~~~~eL~~~m~~ 322 (352)
T PRK05437 269 ------------------GIRNG-LD-IAKALALGADAVGMAGPFLK--AAL----EGGEEAVIELIEQWIEELKIAMFL 322 (352)
T ss_pred ------------------CCCCH-HH-HHHHHHcCCCEEEEhHHHHH--HHH----hccHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 23 34568899998877765411 110 01133 577778888888888
Q ss_pred hCCccccc
Q 022892 275 SKGKQRMN 282 (290)
Q Consensus 275 lg~~~~~~ 282 (290)
+|.+++-+
T Consensus 323 ~G~~~i~e 330 (352)
T PRK05437 323 TGAKNIAE 330 (352)
T ss_pred hCCCCHHH
Confidence 88755443
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.12 Score=49.78 Aligned_cols=185 Identities=13% Similarity=0.116 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCC-CCChhHHHHHHHHHHHhc-CCcEE--Eee--cCcccHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFR-GPGMVEGLKILEKVKIAY-DIPIV--TDV--HETVQCE 101 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~-g~~~~~~l~~L~~~~~~~-Gi~~~--s~~--~d~~~~~ 101 (290)
+.++..++++.|.+ +|++.|=..+-. .. ...+|+ ++.....+++++.++... +..+. ..| .+.++++
T Consensus 23 ~~~~~~~i~~~L~~----aGv~~IEvg~~~--g~-g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 23 TLEQVRAIARALDA----AGVPVIEVTHGD--GL-GGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEeecCC--CC-CCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHH
Confidence 56677777777777 599987553211 00 000121 211112344444443322 23332 222 2456676
Q ss_pred HHhh-hcceecccCCccCCH---HHHHHHHhcCCeEE--EeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC
Q 022892 102 EVGK-VADIIQIPAFLCRQT---DLLVAAAKTGKIIN--IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL 175 (290)
Q Consensus 102 ~l~~-~~d~~kIgs~~~~n~---~lL~~~a~~~~PVi--lstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~ 175 (290)
...+ .++++.|........ +.++.+-+.|+-|. +......+++++.+.++.+.+.|-..+.|+...... +|.
T Consensus 96 ~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~-~P~- 173 (337)
T PRK08195 96 MAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGAL-LPE- 173 (337)
T ss_pred HHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCC-CHH-
Confidence 6666 699988875433222 23344445676443 233333389999999999999998878777765531 222
Q ss_pred CCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 176 IVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 176 ~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
++- +-+..+++ + ++||++ +.|-+ ..+...-+.+|+.+||+ .|+.-+
T Consensus 174 ~v~-~~v~~l~~~l~~~i~ig~-H~Hnn------------------lGla~ANslaAi~aGa~--~iD~Sl 222 (337)
T PRK08195 174 DVR-DRVRALRAALKPDTQVGF-HGHNN------------------LGLGVANSLAAVEAGAT--RIDGSL 222 (337)
T ss_pred HHH-HHHHHHHHhcCCCCeEEE-EeCCC------------------cchHHHHHHHHHHhCCC--EEEecC
Confidence 222 34566676 6 689999 88864 12224557789999998 677655
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.052 Score=43.06 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHH-Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEE-VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~-l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
...+.++++|+++.++ ++. +.+ .+|++-|.+..-.+.++.+++.+.|++|++.+.++.+++|....++..++
T Consensus 38 ~~~~~~~~~~~~~~~~------~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 38 RAEAFAEKYGIPVYTD------LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp HHHHHHHHTTSEEESS------HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhH------HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 3445588999995555 343 443 69999999999999999999999999999999999999999999999988
Q ss_pred cCCC
Q 022892 156 AGNP 159 (290)
Q Consensus 156 ~Gn~ 159 (290)
.|..
T Consensus 112 ~~~~ 115 (120)
T PF01408_consen 112 KGVK 115 (120)
T ss_dssp HTSC
T ss_pred hCCE
Confidence 8753
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.082 Score=48.40 Aligned_cols=104 Identities=18% Similarity=0.106 Sum_probs=70.5
Q ss_pred ccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh
Q 022892 112 IPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE 187 (290)
Q Consensus 112 Igs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~ 187 (290)
-|+..+.+.+++.+ +.+.++||.+|.-...+-.+....++.+...|-.-|++ |+... +. ..+|++.|..+++
T Consensus 112 ~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V-d~~~~-g~--~~a~~~~I~~i~~ 187 (231)
T TIGR00736 112 IGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV-DAMYP-GK--PYADMDLLKILSE 187 (231)
T ss_pred CchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE-eeCCC-CC--chhhHHHHHHHHH
Confidence 36667788876644 44568999999988645556677777888889887777 55321 11 1268899999998
Q ss_pred -c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 188 -A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 188 -~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
. ++||+.+-+=. . ..-+......||+|+||=+
T Consensus 188 ~~~~ipIIgNGgI~-----------------s-----~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 188 EFNDKIIIGNNSID-----------------D-----IESAKEMLKAGADFVSVAR 221 (231)
T ss_pred hcCCCcEEEECCcC-----------------C-----HHHHHHHHHhCCCeEEEcH
Confidence 6 49998743322 1 2334444557999999855
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.52 Score=43.54 Aligned_cols=176 Identities=11% Similarity=0.127 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH-hcCCcEEEee-cCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI-AYDIPIVTDV-HETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~-~~Gi~~~s~~-~d~~~~~~l~~ 105 (290)
+.+..+++++.|.+ +|++.|=..++. .++ +.++.++.+.+ ..+..+.+=. -....++.+.+
T Consensus 18 ~~~~k~~i~~~L~~----~Gv~~iEvg~~~----~~~---------~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~ 80 (268)
T cd07940 18 TPEEKLEIARQLDE----LGVDVIEAGFPA----ASP---------GDFEAVKRIAREVLNAEICGLARAVKKDIDAAAE 80 (268)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEeCCC----CCH---------HHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHH
Confidence 66778888888888 499887665332 111 22333333333 1244444322 34566666555
Q ss_pred -h----cceecccCC--cc-----------CCH----HHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 106 -V----ADIIQIPAF--LC-----------RQT----DLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 106 -~----~d~~kIgs~--~~-----------~n~----~lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
. ++++.|-.. +. .+. +.++.+.+.|..|.+. -+...+++.+...++.+...|-..|
T Consensus 81 ~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i 160 (268)
T cd07940 81 ALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTI 160 (268)
T ss_pred hCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 4 676666321 11 122 3445566678877775 3333489999999999988898888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cC---CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-AN---CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~---~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
.|+...... +|.. +. .-+..+++ ++ +|+++ +.|-+ +.+...-+.+|+..||+
T Consensus 161 ~l~DT~G~~-~P~~-v~-~lv~~l~~~~~~~~i~l~~-H~Hn~------------------~GlA~An~laAi~aG~~-- 216 (268)
T cd07940 161 NIPDTVGYL-TPEE-FG-ELIKKLKENVPNIKVPISV-HCHND------------------LGLAVANSLAAVEAGAR-- 216 (268)
T ss_pred EECCCCCCC-CHHH-HH-HHHHHHHHhCCCCceeEEE-EecCC------------------cchHHHHHHHHHHhCCC--
Confidence 887776531 3322 22 45666777 65 89999 77764 22334556788999998
Q ss_pred EEeeeCC
Q 022892 238 FMEVHDD 244 (290)
Q Consensus 238 ~IEkH~t 244 (290)
+|+.-+.
T Consensus 217 ~iD~s~~ 223 (268)
T cd07940 217 QVECTIN 223 (268)
T ss_pred EEEEEee
Confidence 7777653
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.59 Score=44.26 Aligned_cols=109 Identities=20% Similarity=0.185 Sum_probs=62.6
Q ss_pred cCCccCCHHHHHHH-----HhcCCeEEEeCC--CCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CCCCCCCCCchhHHH
Q 022892 113 PAFLCRQTDLLVAA-----AKTGKIINIKKG--QFCASSVMVNSAEKVRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEW 184 (290)
Q Consensus 113 gs~~~~n~~lL~~~-----a~~~~PVilstG--~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~~y~~~~~dL~~i~~ 184 (290)
||..+.+.+++.++ ..++.||.+|.. ...+..++.+.++.+...|-.-+++ |..+. ..|.. ..++..+..
T Consensus 109 Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~v-h~r~~~~~~~~-~~~~~~i~~ 186 (319)
T TIGR00737 109 GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTL-HGRTRAQGYSG-EANWDIIAR 186 (319)
T ss_pred cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEE-EcccccccCCC-chhHHHHHH
Confidence 44445555444332 235688888863 2212234555566667777655544 43332 22432 357888888
Q ss_pred HHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH-HcCCCEEEEeeeCCC
Q 022892 185 MRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI-AVGVDGVFMEVHDDP 245 (290)
Q Consensus 185 lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAv-a~GA~G~~IEkH~t~ 245 (290)
+++ .++||+.+.+=. . +.-+..++ ..||||+||=+-.--
T Consensus 187 i~~~~~ipvi~nGgI~-----------------~-----~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 187 VKQAVRIPVIGNGDIF-----------------S-----PEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred HHHcCCCcEEEeCCCC-----------------C-----HHHHHHHHHhhCCCEEEEChhhhh
Confidence 888 789998743311 1 33455556 578999999765443
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.2 Score=41.13 Aligned_cols=188 Identities=20% Similarity=0.203 Sum_probs=110.5
Q ss_pred EEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcc------------c-CCCCChhHHHHHHHHHHH
Q 022892 18 FLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSK------------S-FRGPGMVEGLKILEKVKI 84 (290)
Q Consensus 18 ~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~------------~-~~g~~~~~~l~~L~~~~~ 84 (290)
|+.||=- +.+...+.++.|.+ .|+|++-.+. |.+.|- + -+|..+.+.++.++++++
T Consensus 15 y~~aG~P---~~~~~~~~~~~l~~----~Gad~iElGi----PfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~ 83 (256)
T TIGR00262 15 FVTAGDP---TLETSLEIIKTLIE----AGADALELGV----PFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQ 83 (256)
T ss_pred EEeCCCC---CHHHHHHHHHHHHH----cCCCEEEECC----CCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 4555522 55777788887777 5999987764 333332 0 123444567888888887
Q ss_pred h-cCCcE-EEeecCc-------ccHHHHhh-hcceecccCCccCC-HHHHHHHHhcCC-eEEEeCCCCCCHHHHHHHHHH
Q 022892 85 A-YDIPI-VTDVHET-------VQCEEVGK-VADIIQIPAFLCRQ-TDLLVAAAKTGK-IINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 85 ~-~Gi~~-~s~~~d~-------~~~~~l~~-~~d~~kIgs~~~~n-~~lL~~~a~~~~-PVilstG~~~tl~e~~~Ave~ 152 (290)
+ ..+|+ .-+.+++ .-++.+.+ .++.+-|+---... .++++.+-+.+. ++.+-+..+ +.+.+...++.
T Consensus 84 ~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T-~~eri~~i~~~ 162 (256)
T TIGR00262 84 KHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNA-DDERLKQIAEK 162 (256)
T ss_pred cCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCC-CHHHHHHHHHh
Confidence 6 68884 4466665 23444444 57777777544332 245666667776 466777766 77777765542
Q ss_pred HHHcCCCcEEEEee-cCCCCCC--CCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 022892 153 VRLAGNPNVMVCER-GTMFGYN--DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 228 (290)
Q Consensus 153 i~~~Gn~~i~L~~~-gs~~~y~--~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~a 228 (290)
...-+.++-. |.. +-. ...-.+.-+..+|+ ++.||.++--=+ . +.-+..
T Consensus 163 ----~~gfiy~vs~~G~T-G~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~-----------------~-----~e~~~~ 215 (256)
T TIGR00262 163 ----SQGFVYLVSRAGVT-GARNRAASALNELVKRLKAYSAKPVLVGFGIS-----------------K-----PEQVKQ 215 (256)
T ss_pred ----CCCCEEEEECCCCC-CCcccCChhHHHHHHHHHhhcCCCEEEeCCCC-----------------C-----HHHHHH
Confidence 2222333221 221 111 00112456677777 788987742211 1 445667
Q ss_pred HHHcCCCEEEEeeeCC
Q 022892 229 AIAVGVDGVFMEVHDD 244 (290)
Q Consensus 229 Ava~GA~G~~IEkH~t 244 (290)
+...||||+++=+.+.
T Consensus 216 ~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 216 AIDAGADGVIVGSAIV 231 (256)
T ss_pred HHHcCCCEEEECHHHH
Confidence 7889999999998873
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.083 Score=50.32 Aligned_cols=112 Identities=18% Similarity=0.153 Sum_probs=73.0
Q ss_pred ccCCccCCHHHHHHH----H-hc--CCeEEEeCCCCC-CHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCchhH
Q 022892 112 IPAFLCRQTDLLVAA----A-KT--GKIINIKKGQFC-ASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNL 182 (290)
Q Consensus 112 Igs~~~~n~~lL~~~----a-~~--~~PVilstG~~~-tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i 182 (290)
-||..+.+.+++.++ - .. ++||.+|..... +.+++...++.+.+.|-. .+.+|..+.. +|....+|+..+
T Consensus 108 ~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd-~i~Vh~Rt~~~~y~g~~~~~~~i 186 (312)
T PRK10550 108 GGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGAT-ELVVHGRTKEDGYRAEHINWQAI 186 (312)
T ss_pred CchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCC-EEEECCCCCccCCCCCcccHHHH
Confidence 455677888876654 2 23 489999964431 456677888888888864 4555666542 354334588889
Q ss_pred HHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH-HcCCCEEEEeeeCCCC
Q 022892 183 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI-AVGVDGVFMEVHDDPL 246 (290)
Q Consensus 183 ~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAv-a~GA~G~~IEkH~t~d 246 (290)
..+|+ .++||+.+.+=. . +.-+...+ ..|+||+||=+-.--+
T Consensus 187 ~~ik~~~~iPVi~nGdI~-----------------t-----~~da~~~l~~~g~DgVmiGRg~l~n 230 (312)
T PRK10550 187 GEIRQRLTIPVIANGEIW-----------------D-----WQSAQQCMAITGCDAVMIGRGALNI 230 (312)
T ss_pred HHHHhhcCCcEEEeCCcC-----------------C-----HHHHHHHHhccCCCEEEEcHHhHhC
Confidence 99998 789998854422 1 33444444 3689999998764333
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.091 Score=48.68 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc----CCHHHHHHHHhc---CCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC----RQTDLLVAAAKT---GKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~----~n~~lL~~~a~~---~~PVilstG~~~tl~ 144 (290)
.+.++.+.++++++|+.++.++++.++++.+.+ .++++-+..++. +++.+..++.+. ..|++--.|.. |++
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~-t~e 224 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIF-TPE 224 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCC-CHH
Confidence 367999999999999999999999999988777 699999998776 344555555543 24788888888 899
Q ss_pred HHHHHHH
Q 022892 145 VMVNSAE 151 (290)
Q Consensus 145 e~~~Ave 151 (290)
++..+.+
T Consensus 225 d~~~~~~ 231 (260)
T PRK00278 225 DLKRLAK 231 (260)
T ss_pred HHHHHHH
Confidence 9887643
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.22 Score=49.97 Aligned_cols=150 Identities=16% Similarity=0.141 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCH--------HHHHHHHhcCCeEEEeCCCCCCH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQT--------DLLVAAAKTGKIINIKKGQFCAS 143 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~--------~lL~~~a~~~~PVilstG~~~tl 143 (290)
.+.|+.|.++++++|+..+.|+++.++++...+ ..+++-|-.|++..+ .|+..+ ..+..++-..|.. |.
T Consensus 145 ~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~i-p~~~~~vseSGI~-t~ 222 (454)
T PRK09427 145 DEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLI-PADVIVISESGIY-TH 222 (454)
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhC-CCCcEEEEeCCCC-CH
Confidence 357999999999999999999999999998877 799999999998433 222222 2345666678999 99
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCc-hhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCccc
Q 022892 144 SVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDP-RNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 221 (290)
Q Consensus 144 ~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL-~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~ 221 (290)
+|+... + .| -+-+| .|++. ..+ |+ ..+..|....+.| |.=+ .
T Consensus 223 ~d~~~~----~-~~-~davL--iG~~lm~~~----d~~~~~~~L~~~~vKI---CGit-----------------~---- 266 (454)
T PRK09427 223 AQVREL----S-PF-ANGFL--IGSSLMAED----DLELAVRKLILGENKV---CGLT-----------------R---- 266 (454)
T ss_pred HHHHHH----H-hc-CCEEE--ECHHHcCCC----CHHHHHHHHhcccccc---CCCC-----------------C----
Confidence 998874 2 24 34444 45431 111 21 2222222112444 2222 1
Q ss_pred HHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHH
Q 022892 222 IPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEEL 268 (290)
Q Consensus 222 ~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~i 268 (290)
+.-+.+|..+||| +|=.-|.+ ..+-.+++++.+++.+.+
T Consensus 267 -~eda~~a~~~GaD--~lGfIf~~-----~SpR~V~~~~a~~i~~~l 305 (454)
T PRK09427 267 -PQDAKAAYDAGAV--YGGLIFVE-----KSPRYVSLEQAQEIIAAA 305 (454)
T ss_pred -HHHHHHHHhCCCC--EEeeEeCC-----CCCCCCCHHHHHHHHHhC
Confidence 5567788899988 55554432 234445666666666543
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.7 Score=42.84 Aligned_cols=146 Identities=15% Similarity=0.101 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhc-CCcEEEeecCcccHHHHh-------h-hcceecc-------------cCCccCCHHHH----HHHH
Q 022892 74 EGLKILEKVKIAY-DIPIVTDVHETVQCEEVG-------K-VADIIQI-------------PAFLCRQTDLL----VAAA 127 (290)
Q Consensus 74 ~~l~~L~~~~~~~-Gi~~~s~~~d~~~~~~l~-------~-~~d~~kI-------------gs~~~~n~~lL----~~~a 127 (290)
..++.++++.+.. +.+++.+++-..+.+.+. + .+|++-| |+....+.+++ +++.
T Consensus 85 ~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~ 164 (420)
T PRK08318 85 VNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVK 164 (420)
T ss_pred HHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHH
Confidence 3445555655555 588888877652223221 1 2454432 22233555544 4443
Q ss_pred -hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC--------------------C-CCCC---CCCCchhH
Q 022892 128 -KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM--------------------F-GYND---LIVDPRNL 182 (290)
Q Consensus 128 -~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~--------------------~-~y~~---~~~dL~~i 182 (290)
.+.+||.+|-... ..++...++.+...|-+-+++..+... + +|.- ..+.++.+
T Consensus 165 ~~~~~Pv~vKl~p~--~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v 242 (420)
T PRK08318 165 RGSRLPVIVKLTPN--ITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMV 242 (420)
T ss_pred hccCCcEEEEcCCC--cccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHH
Confidence 3579999999864 455666667677778766665322211 1 1211 22457788
Q ss_pred HHHHh-c---CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 183 EWMRE-A---NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 183 ~~lk~-~---~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..+++ . ++||+.... -..+ .-+...+.+||++++|=+-.
T Consensus 243 ~~~~~~~~~~~ipIig~GG----------------I~s~------~da~e~i~aGA~~Vqi~ta~ 285 (420)
T PRK08318 243 AEIARDPETRGLPISGIGG----------------IETW------RDAAEFILLGAGTVQVCTAA 285 (420)
T ss_pred HHHHhccccCCCCEEeecC----------------cCCH------HHHHHHHHhCCChheeeeee
Confidence 88877 5 688865211 1112 22334466899988887654
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.099 Score=49.31 Aligned_cols=137 Identities=13% Similarity=0.152 Sum_probs=89.8
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.|+++.++-+..++-.+||.-++..+++ ..+.+.++|..+.. .+|+| -.|.- +++|+...+..|...
T Consensus 4 ~lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~--------~lG~p---D~g~l-t~~e~~~~~~~I~~~ 71 (285)
T TIGR02317 4 AFRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAAVAA--------SLGLP---DLGIT-TLDEVAEDARRITRV 71 (285)
T ss_pred HHHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH--------hCCCC---CCCCC-CHHHHHHHHHHHHhc
Confidence 4666667777888889999999888777 58888888765543 23666 33433 788887776554311
Q ss_pred CCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCE
Q 022892 157 GNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 236 (290)
Q Consensus 157 Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G 236 (290)
.++||++|.+.+- |...-+....+.-..+|+.|
T Consensus 72 -------------------------------~~iPviaD~d~Gy----------------G~~~~v~~tv~~~~~aG~ag 104 (285)
T TIGR02317 72 -------------------------------TDLPLLVDADTGF----------------GEAFNVARTVREMEDAGAAA 104 (285)
T ss_pred -------------------------------cCCCEEEECCCCC----------------CCHHHHHHHHHHHHHcCCeE
Confidence 3589999999874 33333444556667899999
Q ss_pred EEEeeeCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 237 VFMEVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 237 ~~IEkH~t~dka~-~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
+.||-+..|.|.- ..++.-.+ .+++++.|+.+..+..
T Consensus 105 i~IEDq~~pK~cgh~~g~~lv~---~ee~~~kI~Aa~~a~~ 142 (285)
T TIGR02317 105 VHIEDQVLPKRCGHLPGKELVS---REEMVDKIAAAVDAKR 142 (285)
T ss_pred EEEecCCCccccCCCCCccccC---HHHHHHHHHHHHHhcc
Confidence 9999887664432 13333334 4456666666665544
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=95.82 E-value=1.6 Score=40.49 Aligned_cols=156 Identities=18% Similarity=0.129 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH---HHHHHHHHHh-cCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG---LKILEKVKIA-YDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~---l~~L~~~~~~-~Gi~~~s~~~d~~~~~~l 103 (290)
+.++..+.|+++++ .||+++.-..... .|. ......++. +.++-+..++ .++|+..+-++++.++..
T Consensus 21 ~~~~~~~~a~~~~~----~GA~iIDIG~~st----~p~-~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~a 91 (257)
T TIGR01496 21 SVDKAVAHAERMLE----EGADIIDVGGEST----RPG-ADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAA 91 (257)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEECCCCC----CCC-CCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHH
Confidence 67888888888887 5999998854331 122 111111333 4444454445 499999999999999887
Q ss_pred hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeC--CCCCC----------HHH----HHHHHHHHHHcCCC-cEEEEe
Q 022892 104 GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKK--GQFCA----------SSV----MVNSAEKVRLAGNP-NVMVCE 165 (290)
Q Consensus 104 ~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilst--G~~~t----------l~e----~~~Ave~i~~~Gn~-~i~L~~ 165 (290)
.+ .++++-=.+..- .-.++..+++.+.|+++-. |...+ .++ ....++.+.+.|-+ +=+++.
T Consensus 92 l~~G~~iINsis~~~-~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilD 170 (257)
T TIGR01496 92 LEAGADIINDVSGGQ-DPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILD 170 (257)
T ss_pred HHcCCCEEEECCCCC-CchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 66 566553222221 3457777888999988843 33222 222 34445566777742 335566
Q ss_pred ecCCCCCCCCCCCc---hhHHHHHhcCCCEEE
Q 022892 166 RGTMFGYNDLIVDP---RNLEWMREANCPVVA 194 (290)
Q Consensus 166 ~gs~~~y~~~~~dL---~~i~~lk~~~~pV~~ 194 (290)
.|..|.- ...-++ +.+..++++++|+.+
T Consensus 171 Pg~gf~k-s~~~~~~~l~~i~~l~~~~~p~l~ 201 (257)
T TIGR01496 171 PGIGFGK-TPEHNLELLKHLEEFVALGYPLLV 201 (257)
T ss_pred CCCCccc-CHHHHHHHHHHHHHHHhCCCcEEE
Confidence 6654321 111133 455555556789754
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.91 Score=44.27 Aligned_cols=176 Identities=11% Similarity=0.081 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecC---cccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE---TVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d---~~~~~~l~ 104 (290)
+.+..+++|+.|.++ |++.|=... |. .+ +..++.++.+.+ .|+......|. ...++.+.
T Consensus 24 s~e~k~~ia~~L~~~----GV~~IE~G~----p~--------~~-~~~~e~i~~i~~-~~~~~~i~~~~r~~~~di~~a~ 85 (378)
T PRK11858 24 TNEEKLAIARMLDEI----GVDQIEAGF----PA--------VS-EDEKEAIKAIAK-LGLNASILALNRAVKSDIDASI 85 (378)
T ss_pred CHHHHHHHHHHHHHh----CCCEEEEeC----CC--------cC-hHHHHHHHHHHh-cCCCeEEEEEcccCHHHHHHHH
Confidence 678889999999885 998875431 11 11 233444444433 46665555555 55666655
Q ss_pred h-hcceecccC--Ccc-----------CCH----HHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEE
Q 022892 105 K-VADIIQIPA--FLC-----------RQT----DLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVC 164 (290)
Q Consensus 105 ~-~~d~~kIgs--~~~-----------~n~----~lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~ 164 (290)
+ .++++.|.- .+. .+. +.++.+...|..|.+. -+.-.+++.+.+.++.+...|-..|.|+
T Consensus 86 ~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~ 165 (378)
T PRK11858 86 DCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFC 165 (378)
T ss_pred hCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 5 577655532 222 011 2445566678888776 3434478999999999888998888888
Q ss_pred eecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 165 ERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 165 ~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..... -.|.. + ...+..+++ +++|+++ +.|-. ..+...-+.+|+.+||+ .|+.-+
T Consensus 166 DT~G~-~~P~~-v-~~lv~~l~~~~~~~l~~-H~Hnd------------------~GlA~AN~laAv~aGa~--~vd~tv 221 (378)
T PRK11858 166 DTVGI-LDPFT-M-YELVKELVEAVDIPIEV-HCHND------------------FGMATANALAGIEAGAK--QVHTTV 221 (378)
T ss_pred ccCCC-CCHHH-H-HHHHHHHHHhcCCeEEE-EecCC------------------cCHHHHHHHHHHHcCCC--EEEEee
Confidence 77653 12221 1 134556676 7899999 77753 22334557789999998 777765
Q ss_pred CC
Q 022892 244 DP 245 (290)
Q Consensus 244 t~ 245 (290)
..
T Consensus 222 ~G 223 (378)
T PRK11858 222 NG 223 (378)
T ss_pred cc
Confidence 43
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.58 Score=44.04 Aligned_cols=181 Identities=11% Similarity=0.095 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-h
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-V 106 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~ 106 (290)
+.++.+++|+.|.+ +|++.+=..+|.. |.-.|. +. +..+.++.+.+..|..+..-..+...++...+ .
T Consensus 24 s~e~k~~ia~~L~~----~Gv~~IEvgsf~~-p~~~p~----~~--d~~e~~~~l~~~~~~~~~~l~~~~~~ie~A~~~g 92 (287)
T PRK05692 24 PTADKIALIDRLSA----AGLSYIEVASFVS-PKWVPQ----MA--DAAEVMAGIQRRPGVTYAALTPNLKGLEAALAAG 92 (287)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEeCCCcC-cccccc----cc--cHHHHHHhhhccCCCeEEEEecCHHHHHHHHHcC
Confidence 77888999999998 4999887776652 322222 11 12333444443456666555567778887766 5
Q ss_pred cceecccCCcc-----CC--------H----HHHHHHHhcCCeEE--Ee-------CCCCCCHHHHHHHHHHHHHcCCCc
Q 022892 107 ADIIQIPAFLC-----RQ--------T----DLLVAAAKTGKIIN--IK-------KGQFCASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 107 ~d~~kIgs~~~-----~n--------~----~lL~~~a~~~~PVi--ls-------tG~~~tl~e~~~Ave~i~~~Gn~~ 160 (290)
++++.|..... .| . +.++.+-+.|+-|. ++ -|.. +++.+.+.++.+...|-+.
T Consensus 93 ~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~d~ 171 (287)
T PRK05692 93 ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEV-PPEAVADVAERLFALGCYE 171 (287)
T ss_pred CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCC-CHHHHHHHHHHHHHcCCcE
Confidence 77665552221 11 1 23444445677664 22 1233 8999999999999999988
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHh-cC-CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~-~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
|.|+.....- .|. ++- .-+..+++ ++ +|+++ +.|.. +.+...-+.+|+.+||+ .
T Consensus 172 i~l~DT~G~~-~P~-~v~-~lv~~l~~~~~~~~i~~-H~Hn~------------------~Gla~AN~laA~~aG~~--~ 227 (287)
T PRK05692 172 ISLGDTIGVG-TPG-QVR-AVLEAVLAEFPAERLAG-HFHDT------------------YGQALANIYASLEEGIT--V 227 (287)
T ss_pred EEeccccCcc-CHH-HHH-HHHHHHHHhCCCCeEEE-EecCC------------------CCcHHHHHHHHHHhCCC--E
Confidence 8888776531 122 121 34566676 65 89998 77763 22335557789999998 7
Q ss_pred EeeeCC
Q 022892 239 MEVHDD 244 (290)
Q Consensus 239 IEkH~t 244 (290)
|+.-..
T Consensus 228 id~s~~ 233 (287)
T PRK05692 228 FDASVG 233 (287)
T ss_pred EEEEcc
Confidence 776654
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.82 Score=41.52 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
.-+++|+.+.+ .|++.+...-++. ..+. ...+..+++++++.++|+.. =+-+.++++.+-+ .+
T Consensus 36 dp~~~a~~~~~----~g~~~l~i~DLd~--------~~~~--~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga 101 (233)
T cd04723 36 DPLDVARAYKE----LGFRGLYIADLDA--------IMGR--GDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGA 101 (233)
T ss_pred CHHHHHHHHHH----CCCCEEEEEeCcc--------ccCC--CccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCC
Confidence 45788888887 4988776655542 1111 24577888888888888776 4666677777655 68
Q ss_pred ceecccCCccCCHHHHHHHHh-cCC-eEEEe----CC------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAK-TGK-IINIK----KG------QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL 175 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~-~~~-PVils----tG------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~ 175 (290)
+-+-||+...+| ++++++++ .+. -|+++ .| ...++.++... +... -..+++.....- +. ..
T Consensus 102 ~~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~li~~di~~~-G~-~~ 174 (233)
T cd04723 102 SRVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRR---LAKW-PEELIVLDIDRV-GS-GQ 174 (233)
T ss_pred CeEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHH---HHHh-CCeEEEEEcCcc-cc-CC
Confidence 889999999999 99988654 444 35544 23 23346665554 4444 456787777542 11 12
Q ss_pred CCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 176 IVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 176 ~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
-.|+..+..+.+ .++||++ +- |.+. ..-...+..+|++|+++=+-+
T Consensus 175 g~~~~~~~~i~~~~~ipvi~-~G-------------------Gi~s--~edi~~l~~~G~~~vivGsal 221 (233)
T cd04723 175 GPDLELLERLAARADIPVIA-AG-------------------GVRS--VEDLELLKKLGASGALVASAL 221 (233)
T ss_pred CcCHHHHHHHHHhcCCCEEE-eC-------------------CCCC--HHHHHHHHHcCCCEEEEehHH
Confidence 346777777777 6899987 11 2111 223345567899999998765
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.7 Score=40.42 Aligned_cols=205 Identities=18% Similarity=0.191 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCCh--hHHHHH-HHHHHHhcCCcEEEeecCcccHHH--
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGM--VEGLKI-LEKVKIAYDIPIVTDVHETVQCEE-- 102 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~--~~~l~~-L~~~~~~~Gi~~~s~~~d~~~~~~-- 102 (290)
+.+..+++|.+=.+.-.+.|+|.|..+.|...|.. +..+. -..+.. ..++.++.++|+-..++--.....
T Consensus 23 ~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~-----~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~aala 97 (254)
T PF03437_consen 23 SMEEIIERAVREAEALEEGGVDGIIVENMGDVPYP-----KRVGPETVAAMARIAREVRREVSVPVGVNVLRNDPKAALA 97 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCcc-----CCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHHHHH
Confidence 56788888888777778899999999887643421 12221 122332 446668889999888776333332
Q ss_pred Hhh--hcceecccCCcc-----------CCHHHHHHHHhcCCe------EEEeCCCCCCHHHHHHHHHHH-HHcCCCcEE
Q 022892 103 VGK--VADIIQIPAFLC-----------RQTDLLVAAAKTGKI------INIKKGQFCASSVMVNSAEKV-RLAGNPNVM 162 (290)
Q Consensus 103 l~~--~~d~~kIgs~~~-----------~n~~lL~~~a~~~~P------VilstG~~~tl~e~~~Ave~i-~~~Gn~~i~ 162 (290)
++. ..+|+.+..+.= .-.+++|+=.+++.. |..|.+....-.++..+++.. ...+. + .
T Consensus 98 iA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~a-D-a 175 (254)
T PF03437_consen 98 IAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGA-D-A 175 (254)
T ss_pred HHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCC-C-E
Confidence 232 588888655421 123466655444444 334444433222233333322 33333 3 3
Q ss_pred EEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 163 VCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 163 L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
||-.|...+.+ .++.-+...|+ .++||.+ .|-.+ .. -+.. .-.-|||+++=+
T Consensus 176 viVtG~~TG~~---~~~~~l~~vr~~~~~PVlv-GSGvt---------------~~------Ni~~--~l~~ADG~IVGS 228 (254)
T PF03437_consen 176 VIVTGKATGEP---PDPEKLKRVREAVPVPVLV-GSGVT---------------PE------NIAE--YLSYADGAIVGS 228 (254)
T ss_pred EEECCcccCCC---CCHHHHHHHHhcCCCCEEE-ecCCC---------------HH------HHHH--HHHhCCEEEEee
Confidence 44466554544 36778888888 6799988 33221 01 1111 112388899999
Q ss_pred eCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 022892 242 HDDPLNAPVDGPTQWPLRNLEELLEELV 269 (290)
Q Consensus 242 H~t~dka~~D~~~sl~p~~l~~lv~~ir 269 (290)
+|--|-.+ ...++++-.++||+.++
T Consensus 229 ~~K~~G~~---~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 229 YFKKDGKW---ENPVDPERVRRFMEAVK 253 (254)
T ss_pred eeeeCCEe---CCcCCHHHHHHHHHHhh
Confidence 99443333 23578999999998876
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.1 Score=38.13 Aligned_cols=134 Identities=21% Similarity=0.129 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
.-++.+++.|..+|+.++..- .++.+.+ .+|.+-.+...... ..++..-..++.+.++.. |.+|+..+.+
T Consensus 43 ~~~~~i~~~~~~~~~~l~~~~----~~~~a~~~g~~~vh~~~~~~~~-~~~~~~~~~~~~~g~~~~---t~~~~~~~~~- 113 (196)
T cd00564 43 ELARALRELCRKYGVPLIIND----RVDLALAVGADGVHLGQDDLPV-AEARALLGPDLIIGVSTH---SLEEALRAEE- 113 (196)
T ss_pred HHHHHHHHHHHHhCCeEEEeC----hHHHHHHcCCCEEecCcccCCH-HHHHHHcCCCCEEEeeCC---CHHHHHHHhh-
Confidence 346677788888999998742 3555555 58888777755433 333555556777887763 7777766543
Q ss_pred HHHcCCCcEEEEeec---CCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 022892 153 VRLAGNPNVMVCERG---TMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 228 (290)
Q Consensus 153 i~~~Gn~~i~L~~~g---s~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~a 228 (290)
.|-+.+.+...- +..++ .....+..+..+++ .++||..+. |.. ..-...
T Consensus 114 ---~g~d~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pv~a~G--------------------Gi~---~~~i~~ 166 (196)
T cd00564 114 ---LGADYVGFGPVFPTPTKPGA-GPPLGLELLREIAELVEIPVVAIG--------------------GIT---PENAAE 166 (196)
T ss_pred ---cCCCEEEECCccCCCCCCCC-CCCCCHHHHHHHHHhCCCCEEEEC--------------------CCC---HHHHHH
Confidence 465444442221 11111 02245667777776 688998742 211 233445
Q ss_pred HHHcCCCEEEEeeeC
Q 022892 229 AIAVGVDGVFMEVHD 243 (290)
Q Consensus 229 Ava~GA~G~~IEkH~ 243 (290)
...+|++|+++-+-+
T Consensus 167 ~~~~Ga~~i~~g~~i 181 (196)
T cd00564 167 VLAAGADGVAVISAI 181 (196)
T ss_pred HHHcCCCEEEEehHh
Confidence 677899999887665
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.084 Score=48.84 Aligned_cols=77 Identities=16% Similarity=0.056 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCH----HHHHHHH-h--cCCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQT----DLLVAAA-K--TGKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~----~lL~~~a-~--~~~PVilstG~~~tl~ 144 (290)
.+.++.|.++|.++|+.++.|+++.++++...+ ..+++-|-.|++..+ ..-..++ . .+..++-..|.. |.+
T Consensus 137 ~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~-t~~ 215 (247)
T PRK13957 137 PSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKVGESGIE-SRS 215 (247)
T ss_pred HHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEcCCCC-CHH
Confidence 468999999999999999999999999998877 799999999988422 2222222 2 244566668888 999
Q ss_pred HHHHHH
Q 022892 145 VMVNSA 150 (290)
Q Consensus 145 e~~~Av 150 (290)
++....
T Consensus 216 d~~~l~ 221 (247)
T PRK13957 216 DLDKFR 221 (247)
T ss_pred HHHHHH
Confidence 988754
|
|
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.8 Score=40.24 Aligned_cols=202 Identities=17% Similarity=0.147 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH-HHHHHHhcCCcEEEeecCcccHHHHhhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI-LEKVKIAYDIPIVTDVHETVQCEEVGKV 106 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~-L~~~~~~~Gi~~~s~~~d~~~~~~l~~~ 106 (290)
+.+..++.|+++++ .||+++=-..-. ++ .-+ .+-+.+ ++.+.+..++|+.-+-++++.++...+.
T Consensus 23 d~~~i~~~A~~~~~----~GAdiIDVg~~~-----~~----~eE-~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~ 88 (261)
T PRK07535 23 DAAFIQKLALKQAE----AGADYLDVNAGT-----AV----EEE-PETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKV 88 (261)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEECCCC-----Cc----hhH-HHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHh
Confidence 45667777777776 599987654211 10 001 122333 4444455699998899988888776552
Q ss_pred ---ccee-cccCCccCCHHHHHHHHhcCCeEEEe----CCCCCCH----HHHHHHHHHHHHcCCC-cEEEEeecCCC-CC
Q 022892 107 ---ADII-QIPAFLCRQTDLLVAAAKTGKIINIK----KGQFCAS----SVMVNSAEKVRLAGNP-NVMVCERGTMF-GY 172 (290)
Q Consensus 107 ---~d~~-kIgs~~~~n~~lL~~~a~~~~PVils----tG~~~tl----~e~~~Ave~i~~~Gn~-~i~L~~~gs~~-~y 172 (290)
.+++ -|.+.+-....++..+++.+.||++- .|+..|. +.+...++.+.+.|-+ +=+++..|..+ +.
T Consensus 89 ~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~ 168 (261)
T PRK07535 89 AKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSA 168 (261)
T ss_pred CCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccC
Confidence 3332 22222222335667788889999863 3444344 4455566677778853 45777888752 22
Q ss_pred CCCCCC---chhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCC--CcccHHHH-HHHHHHcCCCEEEEeeeCC
Q 022892 173 NDLIVD---PRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGG--LRELIPCI-ARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 173 ~~~~~d---L~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g--~~~~~~~~-a~aAva~GA~G~~IEkH~t 244 (290)
.. .-+ |+.+..+++ + ++|+.+-.| +.|.| .|..+..+ ...|+.+|.+..++-..
T Consensus 169 ~~-~~~~~~l~~i~~l~~~~pg~p~l~G~S---------------n~Sfglp~r~~in~~fl~~a~~~Gl~~aI~np~-- 230 (261)
T PRK07535 169 AQ-DAGPEVLETIRRIKELYPKVHTTCGLS---------------NISFGLPNRKLINRAFLVMAMGAGMDSAILDPL-- 230 (261)
T ss_pred Ch-HHHHHHHHHHHHHHHhCCCCCEEEEeC---------------CCccCCcchHHHHHHHHHHHHHcCCCEEeeCCC--
Confidence 11 123 677777777 5 899765222 11222 23333332 33567889886665432
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 245 PLNAPVDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 245 ~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
| +.|++.++..+..+|.
T Consensus 231 ------~----------~~~~~~~~~~~~l~g~ 247 (261)
T PRK07535 231 ------D----------RDLMGAIAAAEALLGQ 247 (261)
T ss_pred ------C----------HHHHHHHHHHHHHhCC
Confidence 1 4567777777777766
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.76 Score=40.50 Aligned_cols=180 Identities=13% Similarity=0.026 Sum_probs=97.2
Q ss_pred HHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh--cCCcEEEeecCcccHHHHhh-hcceecccCCccCCH
Q 022892 44 TKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA--YDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQT 120 (290)
Q Consensus 44 ~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~--~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~ 120 (290)
.++|++++=+-.+++.||. .. .+..+.|.+.+.. .++.++....-.+-.+.+.+ .+|++|+++.+ ..
T Consensus 16 ~~~Gvd~ig~i~~~~s~R~-------v~-~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e--~~ 85 (203)
T cd00405 16 AEAGADAIGFIFAPKSPRY-------VS-PEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE--SP 85 (203)
T ss_pred HHcCCCEEEEecCCCCCCC-------CC-HHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC--CH
Confidence 3469998877655543442 11 4567778888877 66666554432222234444 48999999876 34
Q ss_pred HHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC--CCCCCCchhHHHHHhcCCCEEEeCC
Q 022892 121 DLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY--NDLIVDPRNLEWMREANCPVVADVT 197 (290)
Q Consensus 121 ~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y--~~~~~dL~~i~~lk~~~~pV~~D~s 197 (290)
+.++++-+ .+.+++..-|.+ +..+... ... ...+. +.+|+...+...+ .....|+..+..++ ..+||++ .-
T Consensus 86 ~~~~~l~~~~~~~~i~~i~~~-~~~~~~~-~~~-~~~~a-D~il~dt~~~~~~Gg~g~~~~~~~l~~~~-~~~Pvil-aG 159 (203)
T cd00405 86 EYCAQLRARLGLPVIKAIRVK-DEEDLEK-AAA-YAGEV-DAILLDSKSGGGGGGTGKTFDWSLLRGLA-SRKPVIL-AG 159 (203)
T ss_pred HHHHHHHhhcCCcEEEEEecC-ChhhHHH-hhh-ccccC-CEEEEcCCCCCCCCCCcceEChHHhhccc-cCCCEEE-EC
Confidence 45555543 467777444444 3333221 111 11233 4567776543111 12345665555444 5689877 11
Q ss_pred CCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHH
Q 022892 198 HSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEE 267 (290)
Q Consensus 198 Hs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G-A~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ 267 (290)
|.. +.-...+++.| ++|+-+=+.+.-. +-.-+++.++++++.
T Consensus 160 -------------------GI~---~~Nv~~~i~~~~~~gvdv~S~ie~~------pg~kd~~ki~~~~~~ 202 (203)
T cd00405 160 -------------------GLT---PDNVAEAIRLVRPYGVDVSSGVETS------PGIKDPEKIRAFIEA 202 (203)
T ss_pred -------------------CCC---hHHHHHHHHhcCCCEEEcCCcccCC------CCCcCHHHHHHHHHh
Confidence 210 22233456667 8888777766432 333567777777664
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.1 Score=40.84 Aligned_cols=188 Identities=16% Similarity=0.170 Sum_probs=105.4
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCccc-------------CCCCChhHHHHHHHHHH
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKS-------------FRGPGMVEGLKILEKVK 83 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~-------------~~g~~~~~~l~~L~~~~ 83 (290)
+|+.||=- |.+...+.+++|.+ +|+|++=.+. |-+.|.. -.|..+..++++++++.
T Consensus 4 ~y~~~G~P---~~~~~~~~~~~l~~----~Gad~iel~i----PfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr 72 (242)
T cd04724 4 PYITAGDP---DLETTLEILKALVE----AGADIIELGI----PFSDPVADGPVIQAASERALANGVTLKDVLELVKEIR 72 (242)
T ss_pred EEEeCCCC---CHHHHHHHHHHHHH----CCCCEEEECC----CCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 36666643 45778888888888 5999987763 2222220 01233346788888888
Q ss_pred HhcCCcEEEeec-Cc-------ccHHHHhh-hcceecccCCccCCH-HHHHHHHhcCC-eEEEeCCCCCCHHHHHHHHHH
Q 022892 84 IAYDIPIVTDVH-ET-------VQCEEVGK-VADIIQIPAFLCRQT-DLLVAAAKTGK-IINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 84 ~~~Gi~~~s~~~-d~-------~~~~~l~~-~~d~~kIgs~~~~n~-~lL~~~a~~~~-PVilstG~~~tl~e~~~Ave~ 152 (290)
++..+|+.--.+ ++ .-++.+.+ .++.+-++--..... ++++.+-+.|+ ++.+=+... +.+.++..++.
T Consensus 73 ~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T-~~~~i~~i~~~ 151 (242)
T cd04724 73 KKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTT-PDERIKKIAEL 151 (242)
T ss_pred hcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHhh
Confidence 877888554222 42 23444444 577777743222232 56677777787 566566555 66666665431
Q ss_pred HHHcCCCcEEEEeecCCCCCCC-CCC-CchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 022892 153 VRLAGNPNVMVCERGTMFGYND-LIV-DPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 229 (290)
Q Consensus 153 i~~~Gn~~i~L~~~gs~~~y~~-~~~-dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aA 229 (290)
...-+.++-....++-.. ... -+..+..+|+ .++||.+|..=. . ..-+...
T Consensus 152 ----~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~-----------------~-----~e~~~~~ 205 (242)
T cd04724 152 ----ASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGIS-----------------T-----PEQAAEV 205 (242)
T ss_pred ----CCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCC-----------------C-----HHHHHHH
Confidence 222333322211112111 111 2255667777 689988752211 1 3334455
Q ss_pred HHcCCCEEEEeeeC
Q 022892 230 IAVGVDGVFMEVHD 243 (290)
Q Consensus 230 va~GA~G~~IEkH~ 243 (290)
... |||+++=+.+
T Consensus 206 ~~~-ADgvVvGSai 218 (242)
T cd04724 206 AKY-ADGVIVGSAL 218 (242)
T ss_pred Hcc-CCEEEECHHH
Confidence 666 9999998877
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.21 Score=42.60 Aligned_cols=121 Identities=11% Similarity=0.005 Sum_probs=71.1
Q ss_pred CeEEEEccCCccC----HHHHHHHHHHHHHHHHHcCCCEEeccc--cccCCCCCcccCCCCChhHHHHHHHHHHHh--cC
Q 022892 16 PFFLLAGPNVIES----EEHIMRMAKHIKSISTKVGLPLVFKSS--FDKANRTSSKSFRGPGMVEGLKILEKVKIA--YD 87 (290)
Q Consensus 16 ~~~iIAgpcsien----~~~~le~Ak~L~~~a~~~G~~~V~~~~--~~k~~rts~~~~~g~~~~~~l~~L~~~~~~--~G 87 (290)
++-+|++.+.- + .+...+.+++.++ +|++++.... |.. + + + ..+.-++++++++++ .+
T Consensus 48 ~~~v~~~v~~~-~~~~~~~~~~~~a~~a~~----~Gad~i~v~~~~~~~-~--~-----~-~~~~~~~~~~~i~~~~~~~ 113 (201)
T cd00945 48 DVPVIVVVGFP-TGLTTTEVKVAEVEEAID----LGADEIDVVINIGSL-K--E-----G-DWEEVLEEIAAVVEAADGG 113 (201)
T ss_pred CCeEEEEecCC-CCCCcHHHHHHHHHHHHH----cCCCEEEEeccHHHH-h--C-----C-CHHHHHHHHHHHHHHhcCC
Confidence 56778887762 2 4555555555554 6999987631 111 0 0 0 012335556666666 69
Q ss_pred CcEEEeec-----CcccHHHH----hh-hcceecccCCcc---CCHHHHHHHHh-c--CCeEEEeCCCCCCHHHHHHHHH
Q 022892 88 IPIVTDVH-----ETVQCEEV----GK-VADIIQIPAFLC---RQTDLLVAAAK-T--GKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 88 i~~~s~~~-----d~~~~~~l----~~-~~d~~kIgs~~~---~n~~lL~~~a~-~--~~PVilstG~~~tl~e~~~Ave 151 (290)
+|++-... +++.+..+ .+ .++++|..+... .+...++.+-+ . +.||....|.. +++.+..++.
T Consensus 114 ~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~-~~~~~~~~~~ 192 (201)
T cd00945 114 LPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIK-TLEDALAAIE 192 (201)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCC-CHHHHHHHHH
Confidence 99997554 44444433 23 599999988732 14444444322 2 55898888888 7777776654
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.1 Score=41.30 Aligned_cols=156 Identities=21% Similarity=0.231 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH---HHH-HHHHHHhcCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG---LKI-LEKVKIAYDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~---l~~-L~~~~~~~Gi~~~s~~~d~~~~~~l 103 (290)
+.+..++.|+++.+ .||++|=-..-. .| |++ .....++. +.+ ++.+.+..++|+.-+-++++.++..
T Consensus 22 ~~~~~~~~a~~~~~----~GAdiIDvG~~s--t~--p~~-~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aa 92 (258)
T cd00423 22 SLDKALEHARRMVE----EGADIIDIGGES--TR--PGA-EPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAA 92 (258)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEECCCc--CC--CCC-CcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHH
Confidence 67888899999887 599998766433 12 221 11111222 333 4444455599998899999988887
Q ss_pred hh-hccee-cccCCccCCHHHHHHHHhcCCeEEEeC--CCCC----------C----HHHHHHHHHHHHHcCC-CcEEEE
Q 022892 104 GK-VADII-QIPAFLCRQTDLLVAAAKTGKIINIKK--GQFC----------A----SSVMVNSAEKVRLAGN-PNVMVC 164 (290)
Q Consensus 104 ~~-~~d~~-kIgs~~~~n~~lL~~~a~~~~PVilst--G~~~----------t----l~e~~~Ave~i~~~Gn-~~i~L~ 164 (290)
.+ +.+++ -|.+.. .+..+++.+++.+.||++-. |... + ++.+...++.+.+.|- .+=+++
T Consensus 93 L~~g~~iINdis~~~-~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Iil 171 (258)
T cd00423 93 LKAGADIINDVSGGR-GDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIIL 171 (258)
T ss_pred HHhCCCEEEeCCCCC-CChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 66 56654 333332 22567777888999999865 2211 1 3455555667778882 233566
Q ss_pred eecCCCCCCCCCCC---chhHHHHHhc-CCCEEE
Q 022892 165 ERGTMFGYNDLIVD---PRNLEWMREA-NCPVVA 194 (290)
Q Consensus 165 ~~gs~~~y~~~~~d---L~~i~~lk~~-~~pV~~ 194 (290)
..|..|.- ...-| ++.+..++++ ++|+.+
T Consensus 172 DPg~g~~k-~~~~~~~~l~~i~~~~~~~g~Pil~ 204 (258)
T cd00423 172 DPGIGFGK-TEEHNLELLRRLDAFRELPGLPLLL 204 (258)
T ss_pred eCCCCccC-CHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 77775432 11123 3455555666 899754
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.93 Score=42.10 Aligned_cols=192 Identities=20% Similarity=0.215 Sum_probs=114.0
Q ss_pred chhhHHhhhcC-CCCeEEEEccC-------CccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhH
Q 022892 3 PSTALFNQLKA-AEPFFLLAGPN-------VIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74 (290)
Q Consensus 3 ~~~~~~~~i~~-~~~~~iIAgpc-------sien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~ 74 (290)
|..+++..+.. .+++.||||.= .|...-...++|+...+ +||.++.-- |-+..| ..
T Consensus 33 ~~~~f~~aL~~~~~~~~vIAEiKraSPs~G~i~~~~d~~~~a~~y~~----~GA~aiSVl-------Te~~~F-----~G 96 (254)
T PF00218_consen 33 PPRSFKEALRQNEGRISVIAEIKRASPSKGDIREDFDPAEIAKAYEE----AGAAAISVL-------TEPKFF-----GG 96 (254)
T ss_dssp -TTHHHHHHHSHTSS-EEEEEE-SEETTTEESBSS-SHHHHHHHHHH----TT-SEEEEE---------SCCC-----HH
T ss_pred CCCCHHHHHhcCCCCCeEEEEeecCCCCCCccCccCCHHHHHHHHHh----cCCCEEEEE-------CCCCCC-----CC
Confidence 44566666665 67789999742 22122245677777666 699887532 222223 35
Q ss_pred HHHHHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcceecccCCcc-CCH--HHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 022892 75 GLKILEKVKIAYDIPIVTD--VHETVQCEEVGK-VADIIQIPAFLC-RQT--DLLVAAAKTGKIINIKKGQFCASSVMVN 148 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~-~n~--~lL~~~a~~~~PVilstG~~~tl~e~~~ 148 (290)
.+..|.++++..++|++.- +.|+.++..... ..|.+-+=..-+ ... .|++.+..+|+-+++... +.+|++.
T Consensus 97 s~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh---~~~El~~ 173 (254)
T PF00218_consen 97 SLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVH---NEEELER 173 (254)
T ss_dssp HHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEES---SHHHHHH
T ss_pred CHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEEC---CHHHHHH
Confidence 6889999999999999994 557777776665 588755444444 333 677888899999999987 8999998
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHH
Q 022892 149 SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCI 225 (290)
Q Consensus 149 Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (290)
|++ .|..=|.+=.|. ..+..+|+.....|.. . ++ +.+ +-=++ .+ +.-
T Consensus 174 al~----~~a~iiGINnRd----L~tf~vd~~~~~~l~~~ip~~~-~~i-seSGI---------------~~-----~~d 223 (254)
T PF00218_consen 174 ALE----AGADIIGINNRD----LKTFEVDLNRTEELAPLIPKDV-IVI-SESGI---------------KT-----PED 223 (254)
T ss_dssp HHH----TT-SEEEEESBC----TTTCCBHTHHHHHHHCHSHTTS-EEE-EESS----------------SS-----HHH
T ss_pred HHH----cCCCEEEEeCcc----ccCcccChHHHHHHHhhCccce-eEE-eecCC---------------CC-----HHH
Confidence 864 455444454443 4456678777766654 1 22 333 11111 12 334
Q ss_pred HHHHHHcCCCEEEEeeeC
Q 022892 226 ARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 226 a~aAva~GA~G~~IEkH~ 243 (290)
+......|++|++|-..+
T Consensus 224 ~~~l~~~G~davLVGe~l 241 (254)
T PF00218_consen 224 ARRLARAGADAVLVGEAL 241 (254)
T ss_dssp HHHHCTTT-SEEEESHHH
T ss_pred HHHHHHCCCCEEEECHHH
Confidence 445567899999997765
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=95.48 E-value=2.1 Score=39.65 Aligned_cols=156 Identities=19% Similarity=0.175 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH----HHHHHHhcCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI----LEKVKIAYDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~----L~~~~~~~Gi~~~s~~~d~~~~~~l 103 (290)
+.++.++.|+++++ .||++|=-..-. |.|+ +....-++.++. ++.+.+..++|+.-+-++++.++..
T Consensus 22 ~~~~~~~~a~~~~~----~GAdiIDIG~~s----t~p~-~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~a 92 (257)
T cd00739 22 SLDKAVAHAEKMIA----EGADIIDIGGES----TRPG-ADPVSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAA 92 (257)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEECCCc----CCCC-CCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHH
Confidence 67889999999988 599998664322 1122 221111333333 3445555699999999999999987
Q ss_pred hh-hcceec-ccCCccCCHHHHHHHHhcCCeEEEeCC--CCCC----------HHH----HHHHHHHHHHcCCC-cEEEE
Q 022892 104 GK-VADIIQ-IPAFLCRQTDLLVAAAKTGKIINIKKG--QFCA----------SSV----MVNSAEKVRLAGNP-NVMVC 164 (290)
Q Consensus 104 ~~-~~d~~k-Igs~~~~n~~lL~~~a~~~~PVilstG--~~~t----------l~e----~~~Ave~i~~~Gn~-~i~L~ 164 (290)
.+ .++++= |.++.-. ..++..+++.+.||++-.- .-.+ +++ ....++.+...|-+ +=+++
T Consensus 93 l~~G~~iINdisg~~~~-~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~ 171 (257)
T cd00739 93 LEAGADIINDVSGGSDD-PAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIIL 171 (257)
T ss_pred HHhCCCEEEeCCCCCCC-hHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 66 577664 5555322 5677778889999999542 2111 223 33445566777743 33566
Q ss_pred eecCCCCCCCCCCC---chhHHHHHhcCCCEEE
Q 022892 165 ERGTMFGYNDLIVD---PRNLEWMREANCPVVA 194 (290)
Q Consensus 165 ~~gs~~~y~~~~~d---L~~i~~lk~~~~pV~~ 194 (290)
..|..|... ..-| |+.+..++++++|+.+
T Consensus 172 DPg~gf~ks-~~~~~~~l~~i~~l~~~~~pil~ 203 (257)
T cd00739 172 DPGIGFGKT-PEHNLELLRRLDELKQLGLPVLV 203 (257)
T ss_pred ecCCCcccC-HHHHHHHHHHHHHHHhCCCcEEE
Confidence 777543221 1112 4566666667889755
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=95.47 E-value=1.7 Score=41.32 Aligned_cols=134 Identities=15% Similarity=0.047 Sum_probs=77.4
Q ss_pred HHHHHHHhcCCcEEE-----eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVT-----DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s-----~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
+++++.+..+.||-. +++..+.++.+.+ .++++-++...- .++++++-..+.+|+... .+.++.+.+.+
T Consensus 53 ~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~p--~~~i~~lk~~g~~v~~~v---~s~~~a~~a~~ 127 (307)
T TIGR03151 53 EIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGNP--GKYIPRLKENGVKVIPVV---ASVALAKRMEK 127 (307)
T ss_pred HHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCCCc--HHHHHHHHHcCCEEEEEc---CCHHHHHHHHH
Confidence 344444333444433 3344456665555 688887754432 357788877888888644 37887766543
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH
Q 022892 152 KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI 230 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAv 230 (290)
.|-+- +++|..-.-++....-++..++.+++ .++||+....=. . ..-..++.
T Consensus 128 ----~GaD~-Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~-----------------~-----~~~~~~al 180 (307)
T TIGR03151 128 ----AGADA-VIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIA-----------------D-----GRGMAAAF 180 (307)
T ss_pred ----cCCCE-EEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCC-----------------C-----HHHHHHHH
Confidence 46544 44433211122212235677788877 789998742211 1 23345677
Q ss_pred HcCCCEEEEeeeC
Q 022892 231 AVGVDGVFMEVHD 243 (290)
Q Consensus 231 a~GA~G~~IEkH~ 243 (290)
++||+|+++=+-|
T Consensus 181 ~~GA~gV~iGt~f 193 (307)
T TIGR03151 181 ALGAEAVQMGTRF 193 (307)
T ss_pred HcCCCEeecchHH
Confidence 8999999987654
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.46 E-value=2 Score=41.13 Aligned_cols=236 Identities=19% Similarity=0.213 Sum_probs=113.0
Q ss_pred CchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHH
Q 022892 2 DPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEK 81 (290)
Q Consensus 2 ~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~ 81 (290)
|-||.++ +..-.-| ++|+.... -+....++-.+|.+.+.++|.-.-. .+... .+.. .+.+..+..
T Consensus 41 d~s~~~~-G~~l~~P-i~ia~mtG--g~~~~~~in~~La~~a~~~g~~~~~-Gs~~~-------~~~~---~e~~~~~~~ 105 (326)
T cd02811 41 DLSTEFL-GKRLSAP-LLISAMTG--GSEKAKEINRNLAEAAEELGIAMGV-GSQRA-------ALED---PELAESFTV 105 (326)
T ss_pred CCeeEEC-CceecCC-EEEeCCCC--CChHHHHHHHHHHHHHHHcCCCeEe-cCchh-------hccC---hhhhhHHHH
Confidence 4445544 2223444 66665544 2344677789999999999953211 11100 0100 112223333
Q ss_pred HHHhcC-CcEEEeec-------CcccHHHHhh--hcceecccCCc---------cCCH----HHHHHHHh-cCCeEEEeC
Q 022892 82 VKIAYD-IPIVTDVH-------ETVQCEEVGK--VADIIQIPAFL---------CRQT----DLLVAAAK-TGKIINIKK 137 (290)
Q Consensus 82 ~~~~~G-i~~~s~~~-------d~~~~~~l~~--~~d~~kIgs~~---------~~n~----~lL~~~a~-~~~PVilst 137 (290)
+..... .|++...+ +++.+....+ ..|++.|.-.. -+++ +.|+.+.+ .+.||++|-
T Consensus 106 vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~ 185 (326)
T cd02811 106 VREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKE 185 (326)
T ss_pred HHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 333332 55444443 3333333322 25555553210 0233 44666554 489999995
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CCC----CCC-----------CCCC---chhHHHHHh-c-CCCEEEe
Q 022892 138 -GQFCASSVMVNSAEKVRLAGNPNVMVCERGT-MFG----YND-----------LIVD---PRNLEWMRE-A-NCPVVAD 195 (290)
Q Consensus 138 -G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~~~----y~~-----------~~~d---L~~i~~lk~-~-~~pV~~D 195 (290)
|...+.+++.. +...|-+-|.+--+|. ++- +.. .+.- ...+...++ . ++||+.+
T Consensus 186 ~g~g~s~~~a~~----l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIias 261 (326)
T cd02811 186 VGFGISRETAKR----LADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIAS 261 (326)
T ss_pred cCCCCCHHHHHH----HHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEE
Confidence 55446555443 4556655444422222 110 000 0011 123334444 4 7898874
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 022892 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 196 ~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~l 275 (290)
. |.|.. ..+. .|+++||+++.+=+-|- +++-++ ..--.+.++.+.++++.+-...
T Consensus 262 G--------------------GIr~~-~dv~-kal~lGAd~V~i~~~~L--~~~~~g-~~~~~~~i~~~~~el~~~m~~~ 316 (326)
T cd02811 262 G--------------------GIRNG-LDIA-KALALGADLVGMAGPFL--KAALEG-EEAVIETIEQIIEELRTAMFLT 316 (326)
T ss_pred C--------------------CCCCH-HHHH-HHHHhCCCEEEEcHHHH--HHHhcC-HHHHHHHHHHHHHHHHHHHHHh
Confidence 2 22211 3333 56889999888876431 001111 0001236777888888888888
Q ss_pred CCcccc
Q 022892 276 KGKQRM 281 (290)
Q Consensus 276 g~~~~~ 281 (290)
|.+++-
T Consensus 317 G~~si~ 322 (326)
T cd02811 317 GAKNLA 322 (326)
T ss_pred CCCCHH
Confidence 876653
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.62 Score=43.39 Aligned_cols=183 Identities=17% Similarity=0.187 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccc---cccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee----------
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSS---FDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV---------- 94 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~---~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~---------- 94 (290)
+.++.+++|+.|.++ |++.+=... |.. ...|.+..-.+-++.+.+...+..+..++..
T Consensus 19 ~~~~~~~ia~~L~~~----Gv~~iE~G~~a~~~~-----~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p 89 (275)
T cd07937 19 RTEDMLPIAEALDEA----GFFSLEVWGGATFDV-----CMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYP 89 (275)
T ss_pred cHHHHHHHHHHHHHc----CCCEEEccCCcchhh-----hccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCC
Confidence 567788888888884 988875432 111 0111111112334444444333333333321
Q ss_pred c--CcccHHHHhh-hcceecccCCccCCHH----HHHHHHhcCCeEE--EeC--CCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 95 H--ETVQCEEVGK-VADIIQIPAFLCRQTD----LLVAAAKTGKIIN--IKK--GQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 95 ~--d~~~~~~l~~-~~d~~kIgs~~~~n~~----lL~~~a~~~~PVi--lst--G~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
. .+..++...+ .++++-|.- -+++.+ .++.+-+.|+-|. ++. +...+++.+.+.++.+.+.|-..|.|
T Consensus 90 ~~~~~~di~~~~~~g~~~iri~~-~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l 168 (275)
T cd07937 90 DDVVELFVEKAAKNGIDIFRIFD-ALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICI 168 (275)
T ss_pred cHHHHHHHHHHHHcCCCEEEEee-cCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 1 2334445445 478877743 333343 3344445676654 332 22338999999999999999888888
Q ss_pred EeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 164 CERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 164 ~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
+...+.. .|. ++- .-+..+++ +++|+++ +.|-+ .| +...-+.+|+.+||+ .|+.-
T Consensus 169 ~DT~G~~-~P~-~v~-~lv~~l~~~~~~~l~~-H~Hnd---------------~G---lA~aN~laA~~aGa~--~vd~s 224 (275)
T cd07937 169 KDMAGLL-TPY-AAY-ELVKALKKEVGLPIHL-HTHDT---------------SG---LAVATYLAAAEAGVD--IVDTA 224 (275)
T ss_pred cCCCCCC-CHH-HHH-HHHHHHHHhCCCeEEE-EecCC---------------CC---hHHHHHHHHHHhCCC--EEEEe
Confidence 8766531 222 121 45566777 7789999 88864 12 234556788999998 77765
Q ss_pred CC
Q 022892 243 DD 244 (290)
Q Consensus 243 ~t 244 (290)
+.
T Consensus 225 v~ 226 (275)
T cd07937 225 IS 226 (275)
T ss_pred cc
Confidence 53
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=1 Score=41.01 Aligned_cols=171 Identities=9% Similarity=-0.026 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcce
Q 022892 33 MRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VADI 109 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d~ 109 (290)
.++|+...+. .|++-+...-.+.+ ..+. ...+..+++.+++.++|+.. =+.+.++++.+-+ .++.
T Consensus 34 ~~~a~~~~~~---~Ga~~l~ivDLd~a-------~~~~--~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~k 101 (234)
T PRK13587 34 EESIAYYSQF---ECVNRIHIVDLIGA-------KAQH--AREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINY 101 (234)
T ss_pred HHHHHHHHhc---cCCCEEEEEECccc-------ccCC--cchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCE
Confidence 5677776652 48887766555421 0111 24578888999999999877 6788888887776 6999
Q ss_pred ecccCCccCCHHHHHHHHhc-CCeEEEeC----C----------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 110 IQIPAFLCRQTDLLVAAAKT-GKIINIKK----G----------QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 110 ~kIgs~~~~n~~lL~~~a~~-~~PVilst----G----------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
+-||+...+|.++++++++. +--|+++= | +..++.|+ ++.+...|-..+++..-.. -+. .
T Consensus 102 vvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~---~~~~~~~g~~~ii~tdi~~-dGt-~ 176 (234)
T PRK13587 102 CIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSF---VRQLSDIPLGGIIYTDIAK-DGK-M 176 (234)
T ss_pred EEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHH---HHHHHHcCCCEEEEecccC-cCC-C
Confidence 99999999999999998754 22255442 2 11233443 3445555655655554321 111 0
Q ss_pred CCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 175 LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 175 ~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
.-.|+..+..+.+ .++||++ +- |.+. ..-...+..+|++|+++=+-
T Consensus 177 ~G~~~~li~~l~~~~~ipvi~-~G-------------------Gi~s--~edi~~l~~~G~~~vivG~a 223 (234)
T PRK13587 177 SGPNFELTGQLVKATTIPVIA-SG-------------------GIRH--QQDIQRLASLNVHAAIIGKA 223 (234)
T ss_pred CccCHHHHHHHHHhCCCCEEE-eC-------------------CCCC--HHHHHHHHHcCCCEEEEhHH
Confidence 1246777788877 7899988 21 2111 22223345789999988653
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=2 Score=38.71 Aligned_cols=175 Identities=16% Similarity=0.164 Sum_probs=114.1
Q ss_pred hHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh
Q 022892 6 ALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA 85 (290)
Q Consensus 6 ~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~ 85 (290)
.++..+. ..+++.|.-. ++.+..+..++.|.+ .|+.++-.. |+. ..+++.+++++++
T Consensus 5 ~~~~~l~-~~~vi~vir~---~~~~~a~~~~~al~~----~Gi~~iEit------------~~~---~~a~~~i~~l~~~ 61 (213)
T PRK06552 5 EILTKLK-ANGVVAVVRG---ESKEEALKISLAVIK----GGIKAIEVT------------YTN---PFASEVIKELVEL 61 (213)
T ss_pred HHHHHHH-HCCEEEEEEC---CCHHHHHHHHHHHHH----CCCCEEEEE------------CCC---ccHHHHHHHHHHH
Confidence 3445553 3444444322 256777888888877 588876442 221 3466777777777
Q ss_pred cC----CcEEE-eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC
Q 022892 86 YD----IPIVT-DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 86 ~G----i~~~s-~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~ 159 (290)
++ +.+-+ |++++++++...+ ..+|+-=+ ..|.++++++-+.+.|++- |.. |++|+..|.+ .|-+
T Consensus 62 ~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP---~~~~~v~~~~~~~~i~~iP--G~~-T~~E~~~A~~----~Gad 131 (213)
T PRK06552 62 YKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSP---SFNRETAKICNLYQIPYLP--GCM-TVTEIVTALE----AGSE 131 (213)
T ss_pred cCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECC---CCCHHHHHHHHHcCCCEEC--CcC-CHHHHHHHHH----cCCC
Confidence 73 55554 9999999998877 68877744 4688999999899999886 777 9999999864 5766
Q ss_pred cEEEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 160 NVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 160 ~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
-+-+ || ...+-+..+..++. + ++|++- +=++ + ..-...-.++|++|+
T Consensus 132 ~vkl------FP--a~~~G~~~ik~l~~~~p~ip~~a--tGGI----------------~-----~~N~~~~l~aGa~~v 180 (213)
T PRK06552 132 IVKL------FP--GSTLGPSFIKAIKGPLPQVNVMV--TGGV----------------N-----LDNVKDWFAAGADAV 180 (213)
T ss_pred EEEE------CC--cccCCHHHHHHHhhhCCCCEEEE--ECCC----------------C-----HHHHHHHHHCCCcEE
Confidence 5554 33 32244566777777 5 477653 2221 1 223445578899988
Q ss_pred EEeeeCC
Q 022892 238 FMEVHDD 244 (290)
Q Consensus 238 ~IEkH~t 244 (290)
.+=+-+.
T Consensus 181 avgs~l~ 187 (213)
T PRK06552 181 GIGGELN 187 (213)
T ss_pred EEchHHh
Confidence 7776664
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.23 Score=45.59 Aligned_cols=135 Identities=12% Similarity=0.131 Sum_probs=82.7
Q ss_pred HHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC
Q 022892 81 KVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 81 ~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~ 159 (290)
+..++-+..++.++||.-++..+++ ..+.+.+++..+.. ..|.| .++.. +++|+...+.-|...
T Consensus 3 ~l~~~~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~--------s~G~p---D~~~~-~~~e~~~~~~~I~~~--- 67 (243)
T cd00377 3 ALLESGGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAA--------SLGLP---DGGLL-TLDEVLAAVRRIARA--- 67 (243)
T ss_pred hHHhCCCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHH--------hcCCC---CCCcC-CHHHHHHHHHHHHhh---
Confidence 3334445666667777777777766 47777776654432 11333 23333 666666666554321
Q ss_pred cEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 160 NVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 160 ~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
..+||+.|-+.+- |..+.+....+..+..|++|+.|
T Consensus 68 ----------------------------~~~Pv~~D~~~G~----------------g~~~~~~~~v~~~~~~G~~gv~i 103 (243)
T cd00377 68 ----------------------------VDLPVIADADTGY----------------GNALNVARTVRELEEAGAAGIHI 103 (243)
T ss_pred ----------------------------ccCCEEEEcCCCC----------------CCHHHHHHHHHHHHHcCCEEEEE
Confidence 2478888877652 22222333444556789999999
Q ss_pred eeeCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 240 EVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 240 EkH~t~dka~-~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
|-...|.+.- ...+..++++|+.+.++.+++....
T Consensus 104 ED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~ 139 (243)
T cd00377 104 EDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDD 139 (243)
T ss_pred ecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhc
Confidence 9886665543 3667778888888888877776554
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.33 Score=46.03 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.|+++.++-+..++-.+||.-++..+++ ..+.+.++|..+. ++.+|+| ..|.- +++|+...+..|
T Consensus 7 ~~r~l~~~~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~-------as~lG~p---D~g~l-~~~e~~~~~~~I--- 72 (294)
T TIGR02319 7 TFRELMNAPEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTS-------ASMLGLP---DLGFT-SVSEQAINAKNI--- 72 (294)
T ss_pred HHHHHhcCCCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHH-------HHHcCCC---CcCCC-CHHHHHHHHHHH---
Confidence 4555555566667778888777776665 4555554332211 2234555 22333 555555544433
Q ss_pred CCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 157 GNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 157 Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
.+ .++||++|.+.+- |...-+....+.-..+||.
T Consensus 73 -----------------------------~~~~~lPv~aD~dtGy----------------G~~~~v~r~V~~~~~aGaa 107 (294)
T TIGR02319 73 -----------------------------VLAVDVPVIMDADAGY----------------GNAMSVWRATREFERVGIV 107 (294)
T ss_pred -----------------------------HhccCCCEEEECCCCC----------------CCcHHHHHHHHHHHHcCCe
Confidence 22 4689999999874 2222233445566789999
Q ss_pred EEEEeeeCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 236 GVFMEVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 236 G~~IEkH~t~dka~-~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
|+.||-...|.|.- .+++.-++++ ++++.|+.+..+..
T Consensus 108 gi~IEDq~~pK~cg~~~~k~lv~~e---e~~~kI~Aa~~A~~ 146 (294)
T TIGR02319 108 GYHLEDQVNPKRCGHLEGKRLISTE---EMTGKIEAAVEARE 146 (294)
T ss_pred EEEEECCCCccccCCCCCccccCHH---HHHHHHHHHHHhcc
Confidence 99999886654432 1333334444 56666666655543
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=95.18 E-value=2.2 Score=38.04 Aligned_cols=192 Identities=14% Similarity=0.070 Sum_probs=103.1
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCC-CEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGL-PLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV 94 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~-~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~ 94 (290)
.+++.|+.|.+- ..+.++.+.+ .|. ..+ . +| + ...+.-.+.++++.+..+.++..-+
T Consensus 3 ~pi~~a~m~g~~----~~~~~~~~~~----~G~ig~i-----~--~~-----~--~~~~~~~~~~~~i~~~~~~~~~v~~ 60 (236)
T cd04730 3 YPIIQAPMAGVS----TPELAAAVSN----AGGLGFI-----G--AG-----Y--LTPEALRAEIRKIRALTDKPFGVNL 60 (236)
T ss_pred CCEECCCCCCCC----CHHHHHHHHh----CCCcccc-----C--CC-----C--CCHHHHHHHHHHHHHhcCCCeEEeE
Confidence 357888899863 3455555555 453 222 1 11 0 1112223444445444444544433
Q ss_pred cCcc-------cHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 95 HETV-------QCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 95 ~d~~-------~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
+-.. .++.+.+ .+|.+.++.. ....+++++.+.+.|++.+.. +.+++..+.+ .|- ..++++.
T Consensus 61 i~~~~~~~~~~~~~~~~~~g~d~v~l~~~--~~~~~~~~~~~~~i~~i~~v~---~~~~~~~~~~----~ga-d~i~~~~ 130 (236)
T cd04730 61 LVPSSNPDFEALLEVALEEGVPVVSFSFG--PPAEVVERLKAAGIKVIPTVT---SVEEARKAEA----AGA-DALVAQG 130 (236)
T ss_pred ecCCCCcCHHHHHHHHHhCCCCEEEEcCC--CCHHHHHHHHHcCCEEEEeCC---CHHHHHHHHH----cCC-CEEEEeC
Confidence 3222 3455545 5899999877 456778888888999988743 5666655433 454 4455544
Q ss_pred cCCCCC--CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 167 GTMFGY--NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 167 gs~~~y--~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
...-++ +.....+..+..+++ +++||+... |... +.-...+...||+|+++=+-+
T Consensus 131 ~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~G--------------------GI~~--~~~v~~~l~~GadgV~vgS~l 188 (236)
T cd04730 131 AEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAG--------------------GIAD--GRGIAAALALGADGVQMGTRF 188 (236)
T ss_pred cCCCCCCCccccCHHHHHHHHHHHhCCCEEEEC--------------------CCCC--HHHHHHHHHcCCcEEEEchhh
Confidence 221111 111124566777777 789998731 2111 233445567899999987665
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHH
Q 022892 244 DPLNAPVDGPTQWPLRNLEELLEE 267 (290)
Q Consensus 244 t~dka~~D~~~sl~p~~l~~lv~~ 267 (290)
.- +..+-...+.++++.+
T Consensus 189 ~~------~~e~~~~~~~~~~~~~ 206 (236)
T cd04730 189 LA------TEESGASPAYKQALLA 206 (236)
T ss_pred hc------CcccCCCHHHHHHHHc
Confidence 32 2233334455555543
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.21 Score=44.62 Aligned_cols=100 Identities=15% Similarity=-0.010 Sum_probs=69.1
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEEeecCcccHHHHhh-hcceecccCC---
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVTDVHETVQCEEVGK-VADIIQIPAF--- 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~--- 115 (290)
+.+.++|+++|...... ..++. .+.+.++.+.+++ .|++++.++.+.+.+..+.+ .+|++.+..+
T Consensus 82 ~~a~~aGad~I~~d~~~---~~~p~-------~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t 151 (221)
T PRK01130 82 DALAAAGADIIALDATL---RPRPD-------GETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYT 151 (221)
T ss_pred HHHHHcCCCEEEEeCCC---CCCCC-------CCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceee
Confidence 34445799877654211 00110 1345667777777 89999999999988887777 6999987533
Q ss_pred ------ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 116 ------LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 116 ------~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
.-.+..+++++.+ .++||+..-|.. +.+++..+.+
T Consensus 152 ~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~-t~~~~~~~l~ 193 (221)
T PRK01130 152 EETKKPEEPDFALLKELLKAVGCPVIAEGRIN-TPEQAKKALE 193 (221)
T ss_pred cCCCCCCCcCHHHHHHHHHhCCCCEEEECCCC-CHHHHHHHHH
Confidence 2245677777755 489999999988 8998887644
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.1 Score=49.42 Aligned_cols=110 Identities=21% Similarity=0.192 Sum_probs=66.7
Q ss_pred cccCCccCCHHHHHHH----H-hcCCeEEEeCCCCC--CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHH
Q 022892 111 QIPAFLCRQTDLLVAA----A-KTGKIINIKKGQFC--ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLE 183 (290)
Q Consensus 111 kIgs~~~~n~~lL~~~----a-~~~~PVilstG~~~--tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~ 183 (290)
.-||..+.|.+++..+ . .++.||=+|.=... +.++..+-+..+...|-..|++--|+-.-.|.. .+|...+.
T Consensus 98 g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~-~a~w~~i~ 176 (309)
T PF01207_consen 98 GAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKG-PADWEAIA 176 (309)
T ss_dssp T-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS----HHHHH
T ss_pred CcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCc-ccchHHHH
Confidence 4688899999866543 2 46889988876554 478889999999999965555544433334543 57999999
Q ss_pred HHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH-cCCCEEEEeeeC
Q 022892 184 WMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA-VGVDGVFMEVHD 243 (290)
Q Consensus 184 ~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva-~GA~G~~IEkH~ 243 (290)
.+++ ..+||+++.+=. . ..-+..... .|++|+||=.-.
T Consensus 177 ~i~~~~~ipvi~NGdI~-----------------s-----~~d~~~~~~~tg~dgvMigRga 216 (309)
T PF01207_consen 177 EIKEALPIPVIANGDIF-----------------S-----PEDAERMLEQTGADGVMIGRGA 216 (309)
T ss_dssp HCHHC-TSEEEEESS-------------------S-----HHHHHHHCCCH-SSEEEESHHH
T ss_pred HHhhcccceeEEcCccC-----------------C-----HHHHHHHHHhcCCcEEEEchhh
Confidence 9998 889999865432 1 222333232 499999997654
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.47 Score=46.91 Aligned_cols=118 Identities=12% Similarity=0.169 Sum_probs=83.3
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s 92 (290)
.+++.+.|..+. +.+ .++.++.|++ +|+|+|...+-. +.+ ...++.++++.+++ +++++.
T Consensus 139 ~~~l~v~aavg~--~~~-~~~~v~~lv~----aGvDvI~iD~a~-----------g~~-~~~~~~v~~ik~~~p~~~vi~ 199 (404)
T PRK06843 139 NNKLRVGAAVSI--DID-TIERVEELVK----AHVDILVIDSAH-----------GHS-TRIIELVKKIKTKYPNLDLIA 199 (404)
T ss_pred hcCeEEEEEEeC--CHH-HHHHHHHHHh----cCCCEEEEECCC-----------CCC-hhHHHHHHHHHhhCCCCcEEE
Confidence 567888888775 443 7889999988 599998865322 112 34455666666676 677744
Q ss_pred -eecCcccHHHHhh-hcceecccCC--------cc-----CCHHHH---HHHH-hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 93 -DVHETVQCEEVGK-VADIIQIPAF--------LC-----RQTDLL---VAAA-KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 93 -~~~d~~~~~~l~~-~~d~~kIgs~--------~~-----~n~~lL---~~~a-~~~~PVilstG~~~tl~e~~~Ave 151 (290)
.+-..+.+..+.+ .+|++++|-. .. -++..+ ..++ +.+.|||..=|.. +..++..|+.
T Consensus 200 g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~-~~~Di~KALa 276 (404)
T PRK06843 200 GNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIR-FSGDVVKAIA 276 (404)
T ss_pred EecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCC-CHHHHHHHHH
Confidence 9999999999988 7999998721 11 133333 3333 4689999999999 9999998865
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.32 Score=46.38 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=69.4
Q ss_pred ccCCccCCHHHHHHHH-----hcCCeEEEeCCC--CCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCchhHH
Q 022892 112 IPAFLCRQTDLLVAAA-----KTGKIINIKKGQ--FCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLE 183 (290)
Q Consensus 112 Igs~~~~n~~lL~~~a-----~~~~PVilstG~--~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i~ 183 (290)
.||..+.|.+++.++. ..+.||.+|... ..+..++...++.+.+.|-.-| .+|..+.. .|. ...|+..+.
T Consensus 110 ~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i-~vh~rt~~~~~~-G~a~~~~i~ 187 (321)
T PRK10415 110 AGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQAL-TIHGRTRACLFN-GEAEYDSIR 187 (321)
T ss_pred cccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEE-EEecCccccccC-CCcChHHHH
Confidence 4777889998876643 346799988743 3233466677777777776544 55655431 232 235778888
Q ss_pred HHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH-cCCCEEEEeeeC
Q 022892 184 WMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA-VGVDGVFMEVHD 243 (290)
Q Consensus 184 ~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva-~GA~G~~IEkH~ 243 (290)
.+++ .++||+...+=. . +.-+..++. .||||+||=+-.
T Consensus 188 ~ik~~~~iPVI~nGgI~-----------------s-----~~da~~~l~~~gadgVmiGR~~ 227 (321)
T PRK10415 188 AVKQKVSIPVIANGDIT-----------------D-----PLKARAVLDYTGADALMIGRAA 227 (321)
T ss_pred HHHHhcCCcEEEeCCCC-----------------C-----HHHHHHHHhccCCCEEEEChHh
Confidence 8888 899998743321 1 334445554 699999998644
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.2 Score=42.60 Aligned_cols=138 Identities=17% Similarity=0.111 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhcCCcEEEee--cCcccHHHHhh-hcceecccCCccC---CHHHHHHHHhcC--CeEEEeCCCCCCHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDV--HETVQCEEVGK-VADIIQIPAFLCR---QTDLLVAAAKTG--KIINIKKGQFCASSV 145 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~--~d~~~~~~l~~-~~d~~kIgs~~~~---n~~lL~~~a~~~--~PVilstG~~~tl~e 145 (290)
+..++++++...+++.....+ .+.+.++.+.+ .++++-|-...-. ..++++++-+.. .||+. |.-.|.++
T Consensus 71 ~~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~--G~v~t~~~ 148 (325)
T cd00381 71 EQAEEVRKVKGRLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA--GNVVTAEA 148 (325)
T ss_pred HHHHHHHHhccCceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE--CCCCCHHH
Confidence 334455555444444333322 22334444444 5777766443222 245666665544 78888 44446777
Q ss_pred HHHHHHHHHHcCCCcEEEE-----eecCCCCCCCCCCCchhHHHHHh----cCCCEEEeCCCCCCCCCCCccCCCCccCC
Q 022892 146 MVNSAEKVRLAGNPNVMVC-----ERGTMFGYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASG 216 (290)
Q Consensus 146 ~~~Ave~i~~~Gn~~i~L~-----~~gs~~~y~~~~~dL~~i~~lk~----~~~pV~~D~sHs~~~~~~~~~~~~~~~~~ 216 (290)
.+.+.+ .|-+-|.+. +|.+......-.-++..+..+.+ .++||+.|..=.
T Consensus 149 A~~l~~----aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~----------------- 207 (325)
T cd00381 149 ARDLID----AGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIR----------------- 207 (325)
T ss_pred HHHHHh----cCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCC-----------------
Confidence 776644 566544441 12221000001123445555433 479997642211
Q ss_pred CCcccHHHHHHHHHHcCCCEEEE
Q 022892 217 GLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 217 g~~~~~~~~a~aAva~GA~G~~I 239 (290)
. ..-...|.++||+|+|+
T Consensus 208 ~-----~~di~kAla~GA~~Vmi 225 (325)
T cd00381 208 T-----SGDIVKALAAGADAVML 225 (325)
T ss_pred C-----HHHHHHHHHcCCCEEEe
Confidence 1 22234568899999999
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=95.06 E-value=2 Score=39.13 Aligned_cols=164 Identities=15% Similarity=0.224 Sum_probs=99.0
Q ss_pred HHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCcc
Q 022892 38 HIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLC 117 (290)
Q Consensus 38 ~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~ 117 (290)
++.+.+.+.|.|+++-..-.- .. ..+++-+..++++.+ .+|++-+|-++.++ ...+|.+-++|=.-
T Consensus 16 ~~~~~~~~~gtdai~vGGS~~-----v~----~~~~~~~~~ik~~~~--~~Pvilfp~~~~~i---~~~aDa~l~~svln 81 (219)
T cd02812 16 EIAKLAEESGTDAIMVGGSDG-----VS----STLDNVVRLIKRIRR--PVPVILFPSNPEAV---SPGADAYLFPSVLN 81 (219)
T ss_pred HHHHHHHhcCCCEEEECCccc-----hh----hhHHHHHHHHHHhcC--CCCEEEeCCCcccc---CcCCCEEEEEeeec
Confidence 355666668999998753220 00 012344556666554 79999999999877 45788888887443
Q ss_pred -CCHHHH-----HHHHhcCC--------e---EEEeCCC----------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCC
Q 022892 118 -RQTDLL-----VAAAKTGK--------I---INIKKGQ----------FCASSVMVNSAEKVRLAGNPNVMVCERGTMF 170 (290)
Q Consensus 118 -~n~~lL-----~~~a~~~~--------P---VilstG~----------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~ 170 (290)
+|...+ +.+...++ | +++--|. ..+++++..-+..-..-| -+++=++ +|.
T Consensus 82 s~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~aae~~g-~~ivyLe-~SG- 158 (219)
T cd02812 82 SGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAEYLG-MPIVYLE-YSG- 158 (219)
T ss_pred CCCchHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHHHHHHcC-CeEEEeC-CCC-
Confidence 344332 22322222 1 2222221 135666665555445556 6777777 442
Q ss_pred CCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 171 GYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 171 ~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.+ .|...+..+++ . ++||.+. +|.|. +..+..+..+|||++++=+-+.
T Consensus 159 ~~----~~~e~I~~v~~~~~~~pl~vG--------------------GGIrs--~e~a~~l~~aGAD~VVVGsai~ 208 (219)
T cd02812 159 AY----GPPEVVRAVKKVLGDTPLIVG--------------------GGIRS--GEQAKEMAEAGADTIVVGNIVE 208 (219)
T ss_pred Cc----CCHHHHHHHHHhcCCCCEEEe--------------------CCCCC--HHHHHHHHHcCCCEEEECchhh
Confidence 12 67888999988 7 8998771 12111 4566777788999999877763
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.5 Score=42.06 Aligned_cols=237 Identities=19% Similarity=0.260 Sum_probs=117.7
Q ss_pred CchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHH
Q 022892 2 DPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEK 81 (290)
Q Consensus 2 ~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~ 81 (290)
|-||.+|. ..-..| ++|+.... ..+...++-+.|.+.++++|...-.-. ... .+......+.+..+++
T Consensus 42 d~s~~~~g-~~l~~P-i~iaaMtG--g~~~~~~in~~La~~a~~~g~~~~~Gs-~~~-------~~~~~~~~~~~~~vr~ 109 (333)
T TIGR02151 42 DLTTEFLG-KRLKAP-FYINAMTG--GSEEAGKINRNLARAARELGIPMGVGS-QRA-------ALKDPETADTFEVVRE 109 (333)
T ss_pred CCceEECC-ccccCC-EEEeCCCC--CchhHHHHHHHHHHHHHHcCCCeEEcC-chh-------hccChhhHhHHHHHHH
Confidence 44555552 123455 55554443 335567888999999999997543221 110 0111111122333333
Q ss_pred HHHhcCCcEEEeecCc-------ccHHHHhh--hcceecccCCcc---------CCH----HHHHHHHh-cCCeEEEeC-
Q 022892 82 VKIAYDIPIVTDVHET-------VQCEEVGK--VADIIQIPAFLC---------RQT----DLLVAAAK-TGKIINIKK- 137 (290)
Q Consensus 82 ~~~~~Gi~~~s~~~d~-------~~~~~l~~--~~d~~kIgs~~~---------~n~----~lL~~~a~-~~~PVilst- 137 (290)
. ..++|++...+=+ +.+....+ ..+++.|.=... +++ +.++.+.+ .+.||++|-
T Consensus 110 ~--~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~ 187 (333)
T TIGR02151 110 E--APNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEV 187 (333)
T ss_pred h--CCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 2 4688888866421 11222222 245555432100 233 45666544 489999994
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CCC----C-------CCCCC--c---hhHHHHHh--cCCCEEEeCCC
Q 022892 138 GQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-FGY----N-------DLIVD--P---RNLEWMRE--ANCPVVADVTH 198 (290)
Q Consensus 138 G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~~y----~-------~~~~d--L---~~i~~lk~--~~~pV~~D~sH 198 (290)
|...+. +.+..+...|-+-|.+--+|.. +-. . ....| + ..+...++ .++||+.+.
T Consensus 188 g~g~~~----~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasG-- 261 (333)
T TIGR02151 188 GFGISK----EVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASG-- 261 (333)
T ss_pred CCCCCH----HHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEEC--
Confidence 443333 3344566678765665444321 100 0 00011 1 12222333 357887631
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChH----HHHHHHHHHHHHHHH
Q 022892 199 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLR----NLEELLEELVAIAKV 274 (290)
Q Consensus 199 s~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~----~l~~lv~~ir~~~~~ 274 (290)
|.+. ..-+..++++||+++.+=.-+- ++.. .-.++ .++.+.+++|.+-..
T Consensus 262 ------------------GI~~--~~di~kaLalGAd~V~igr~~L--~~~~----~~g~~~v~~~i~~~~~eL~~~m~~ 315 (333)
T TIGR02151 262 ------------------GLRT--GLDVAKAIALGADAVGMARPFL--KAAL----DEGEEAVIEEIELIIEELKVAMFL 315 (333)
T ss_pred ------------------CCCC--HHHHHHHHHhCCCeehhhHHHH--HHHH----hcCHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 2234456889999877744321 0000 12344 677788888888888
Q ss_pred hCCccccccC
Q 022892 275 SKGKQRMNID 284 (290)
Q Consensus 275 lg~~~~~~~~ 284 (290)
.|.+.+-++.
T Consensus 316 ~G~~~i~el~ 325 (333)
T TIGR02151 316 TGAKTIAELK 325 (333)
T ss_pred hCCCCHHHHc
Confidence 8886665543
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=94.92 E-value=3 Score=38.19 Aligned_cols=213 Identities=18% Similarity=0.195 Sum_probs=129.4
Q ss_pred hHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh
Q 022892 6 ALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA 85 (290)
Q Consensus 6 ~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~ 85 (290)
.|.+.+....-+-||.|..-- |. +.-.+++++|...|++.|--.. .-+..+....-
T Consensus 4 ~l~~~~~~~~alKVIsGLnNF-d~----~~V~~i~~AA~~ggAt~vDIAa-------------------dp~LV~~~~~~ 59 (242)
T PF04481_consen 4 KLQQAFAQRRALKVISGLNNF-DA----ESVAAIVKAAEIGGATFVDIAA-------------------DPELVKLAKSL 59 (242)
T ss_pred HHHHHHHhCcchhheeCcccc-CH----HHHHHHHHHHHccCCceEEecC-------------------CHHHHHHHHHh
Confidence 455566555667799998842 33 4445666777788888764321 11223344477
Q ss_pred cCCcEEEeecCcccHHHHhh-hcceecccCCcc--------CCHHHHHHHHhc-----CCeEEEeCCCCCCHHHHHHHHH
Q 022892 86 YDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC--------RQTDLLVAAAKT-----GKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 86 ~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~--------~n~~lL~~~a~~-----~~PVilstG~~~tl~e~~~Ave 151 (290)
.+||+..+--+|+......+ .+|++-||-+|. ..-+.|...-++ ..|+=+--.--..+++=.+-++
T Consensus 60 s~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~ 139 (242)
T PF04481_consen 60 SNLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAE 139 (242)
T ss_pred CCCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHH
Confidence 89999999999988776655 799999999988 222333332222 2344443343445666666666
Q ss_pred HHHHcCCCcEEEEeecCC-CCCCCCCCC--chhHHHHHh-------cCCCEEEeCCCCCCCCCCCccCCCCccCCCCccc
Q 022892 152 KVRLAGNPNVMVCERGTM-FGYNDLIVD--PRNLEWMRE-------ANCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 221 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~-~~y~~~~~d--L~~i~~lk~-------~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~ 221 (290)
.+...|- +++=.|-|++ .++..-.+. -.+.++|.. ..+||+. +| ++ -
T Consensus 140 ~L~~~Ga-DiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlc-AS-Gl----------------S---- 196 (242)
T PF04481_consen 140 DLVKAGA-DIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLC-AS-GL----------------S---- 196 (242)
T ss_pred HHHHhCC-cEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEe-cc-Cc----------------c----
Confidence 6777775 6777887775 333332222 244555532 4689976 22 21 0
Q ss_pred HHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCc
Q 022892 222 IPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGK 278 (290)
Q Consensus 222 ~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~ 278 (290)
...+-.|+++||.|+=|-+-. --+.+-..|+..+|.+..++..+
T Consensus 197 -~vT~PmAiaaGAsGVGVGSav------------n~Ln~~~aMva~vr~l~~al~~~ 240 (242)
T PF04481_consen 197 -AVTAPMAIAAGASGVGVGSAV------------NRLNDEVAMVAAVRSLVEALSSS 240 (242)
T ss_pred -hhhHHHHHHcCCcccchhHHh------------hhcccHHHHHHHHHHHHHHHhcC
Confidence 234556789999987554443 12234567888888888887653
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.2 Score=46.78 Aligned_cols=84 Identities=20% Similarity=0.130 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 153 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i 153 (290)
...++++++++|++ ....+.+.+ ++ .+|++-|.+-+-.+.++...+-+.||+|++.+.++.|++|.+..++..
T Consensus 40 ~~~a~~~a~~~~~~-----~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a 114 (342)
T COG0673 40 PERAEAFAEEFGIA-----KAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELA 114 (342)
T ss_pred HHHHHHHHHHcCCC-----cccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 34478889999998 222334444 44 499999999999999999999999999999999999999999888877
Q ss_pred HHcCCCcEEEEe
Q 022892 154 RLAGNPNVMVCE 165 (290)
Q Consensus 154 ~~~Gn~~i~L~~ 165 (290)
++. +..+++.+
T Consensus 115 ~~~-~~~l~v~~ 125 (342)
T COG0673 115 RKA-GVKLMVGF 125 (342)
T ss_pred HHc-CCceeeeh
Confidence 665 33444433
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.46 Score=42.25 Aligned_cols=85 Identities=22% Similarity=0.184 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc----CCHHHHHHHHhc---CCeEEEeCCCCCCHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC----RQTDLLVAAAKT---GKIINIKKGQFCASSV 145 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~----~n~~lL~~~a~~---~~PVilstG~~~tl~e 145 (290)
+.++.+.+.+..+|+.++.++++.+.+..+.+ .++++-+.+++. .+.++++++.+. +.||+..-|.. ++++
T Consensus 108 ~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~-s~ed 186 (217)
T cd00331 108 EQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGIS-TPED 186 (217)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCC-CHHH
Confidence 56777888889999999999999988888777 599988887764 456677777653 68999999999 9999
Q ss_pred HHHHHHHHHHcCCCcEEE
Q 022892 146 MVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 146 ~~~Ave~i~~~Gn~~i~L 163 (290)
+..+.+ .|-.-+++
T Consensus 187 i~~~~~----~Ga~gviv 200 (217)
T cd00331 187 VKRLAE----AGADAVLI 200 (217)
T ss_pred HHHHHH----cCCCEEEE
Confidence 987654 46544443
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.36 Score=46.31 Aligned_cols=125 Identities=16% Similarity=0.126 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcc----------------
Q 022892 35 MAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETV---------------- 98 (290)
Q Consensus 35 ~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~---------------- 98 (290)
-+++|++ .|+|+||+=-|.. |-..+.--+ .. ..-++.+-+.|++.||||+-|+...+
T Consensus 112 s~~rike----~GadavK~Llyy~-pD~~~ein~-~k-~a~vervg~eC~a~dipf~lE~l~Yd~~~~d~~~~eyak~kP 184 (329)
T PRK04161 112 SVKRLKE----AGADAVKFLLYYD-VDGDEEIND-QK-QAYIERIGSECTAEDIPFFLELLTYDERISDNNSAAYAKLKP 184 (329)
T ss_pred hHHHHHH----hCCCeEEEEEEEC-CCCCHHHHH-HH-HHHHHHHHHHHHHCCCCeEEEEeccCCcccccccHHHHhhCh
Confidence 5788887 4999999866552 211111000 00 23456677789999999999987433
Q ss_pred -----cHHHHhh---hcceecc------------cCCcc--CCHHHH---HH-HHhcCCe-EEEeCCCCCCHHHHHHHHH
Q 022892 99 -----QCEEVGK---VADIIQI------------PAFLC--RQTDLL---VA-AAKTGKI-INIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 99 -----~~~~l~~---~~d~~kI------------gs~~~--~n~~lL---~~-~a~~~~P-VilstG~~~tl~e~~~Ave 151 (290)
.+..+.+ .+|++|| |..+. +.-+.. ++ ...+++| |+||.|.+ .+.....++
T Consensus 185 ~~V~~amkefs~~~~gvDVlKvEvPvn~~~veG~~~g~~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~--~~~F~~~l~ 262 (329)
T PRK04161 185 HKVNGAMKVFSDKRFGVDVLKVEVPVNMAYVEGFTEGEVVYSQEEAIKAFKDQEAATHLPYIYLSAGVS--AKLFQETLV 262 (329)
T ss_pred HHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhcccCCCEEEEcCCCC--HHHHHHHHH
Confidence 1223332 4999999 32221 222322 22 2346777 78898866 889999999
Q ss_pred HHHHcCCC-cEEEEeecC
Q 022892 152 KVRLAGNP-NVMVCERGT 168 (290)
Q Consensus 152 ~i~~~Gn~-~i~L~~~gs 168 (290)
.-.+.|.. +=+||=|-+
T Consensus 263 ~A~~aGa~fnGvL~GRAt 280 (329)
T PRK04161 263 FAAEAGAQFNGVLCGRAT 280 (329)
T ss_pred HHHhcCCCcccEEeehhh
Confidence 88877764 467766655
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.85 Score=43.03 Aligned_cols=85 Identities=14% Similarity=0.031 Sum_probs=56.4
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHHhhh----------cceecccCCcc------------CCHHHHHHH----HhcCCe
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEVGKV----------ADIIQIPAFLC------------RQTDLLVAA----AKTGKI 132 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l~~~----------~d~~kIgs~~~------------~n~~lL~~~----a~~~~P 132 (290)
|+++.++-+..++-.+||.-++..+++. .+.+.++|..+ +-.+++..+ ..+..|
T Consensus 1 lr~~l~~~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~P 80 (285)
T TIGR02320 1 LRQLLHSKPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKP 80 (285)
T ss_pred ChHHhcCCCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCC
Confidence 3455666677777788888877766554 66666655422 344444443 246889
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 133 INIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 133 VilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
|++.--..+++.++.+.|+.+.+.|-.-|+|
T Consensus 81 v~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~i 111 (285)
T TIGR02320 81 IILDGDTGGNFEHFRRLVRKLERRGVSAVCI 111 (285)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 6665333369999999999999998755555
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.2 Score=41.42 Aligned_cols=177 Identities=11% Similarity=0.139 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEE-eecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVT-DVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s-~~~d~~~~~~l~~ 105 (290)
+.++.+++|+.|.+ +|++.+=..++- .+ ++.++.++.+.+. ....+++ ....+..++.+.+
T Consensus 20 s~~~k~~ia~~L~~----~Gv~~IEvG~p~----~~---------~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~ 82 (363)
T TIGR02090 20 TVEQKVEIARKLDE----LGVDVIEAGFPI----AS---------EGEFEAIKKISQEGLNAEICSLARALKKDIDKAID 82 (363)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEeCCC----CC---------hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHH
Confidence 67788899999888 499887654321 11 1223333333321 1112221 1234556666555
Q ss_pred -hcceecc--cCCccC-----------CH----HHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 106 -VADIIQI--PAFLCR-----------QT----DLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 106 -~~d~~kI--gs~~~~-----------n~----~lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
.++++.| ++.+.. +. +.++.+.+.|..|.++ ...-.+++.+...++.+...|-..|.|+.
T Consensus 83 ~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (363)
T TIGR02090 83 CGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIAD 162 (363)
T ss_pred cCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 4666655 332221 11 3445566678776665 44445889999999998889988888888
Q ss_pred ecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 166 RGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.... -+|.. +- ..+..+++ +++||++ +.|-. ..+...-+.+|+.+||+ .|+.-+.
T Consensus 163 T~G~-~~P~~-v~-~li~~l~~~~~~~l~~-H~Hnd------------------~GlA~AN~laA~~aGa~--~vd~s~~ 218 (363)
T TIGR02090 163 TVGV-LTPQK-ME-ELIKKLKENVKLPISV-HCHND------------------FGLATANSIAGVKAGAE--QVHVTVN 218 (363)
T ss_pred CCCc-cCHHH-HH-HHHHHHhcccCceEEE-EecCC------------------CChHHHHHHHHHHCCCC--EEEEEee
Confidence 7542 13322 21 34556666 6789999 67753 22334557788999998 7777664
Q ss_pred C
Q 022892 245 P 245 (290)
Q Consensus 245 ~ 245 (290)
.
T Consensus 219 G 219 (363)
T TIGR02090 219 G 219 (363)
T ss_pred c
Confidence 3
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=2.7 Score=38.59 Aligned_cols=182 Identities=15% Similarity=0.131 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
.-+++|+.+.+ .|++-+...-.+.+ ..+. ...+..+++++++. +|+.. =+-+.++++.+.+ .+
T Consensus 31 dP~~~A~~~~~----~ga~~lhivDLd~a-------~~g~--~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga 96 (241)
T PRK14114 31 DPAELVEKLIE----EGFTLIHVVDLSKA-------IENS--VENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGY 96 (241)
T ss_pred CHHHHHHHHHH----CCCCEEEEEECCCc-------ccCC--cchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCC
Confidence 35788888887 59887766555420 1111 23456666666665 45444 5677778877766 69
Q ss_pred ceecccCCccCCHHHHHHHHhcCCeEEEe----CC----------CCCCHHHHHHHHHHHHHcCCCcEEEEee--cCC-C
Q 022892 108 DIIQIPAFLCRQTDLLVAAAKTGKIINIK----KG----------QFCASSVMVNSAEKVRLAGNPNVMVCER--GTM-F 170 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~~~~PVils----tG----------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~--gs~-~ 170 (290)
+.+-|||....|.++++++++.+--+++| .| +..++.||.. .+...|-..+++..= ..+ .
T Consensus 97 ~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~---~~~~~g~~~ii~tdI~rdGt~~ 173 (241)
T PRK14114 97 RRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLK---RLKEYGLEEIVHTEIEKDGTLQ 173 (241)
T ss_pred CEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHH---HHHhcCCCEEEEEeechhhcCC
Confidence 99999999999999999987654334542 22 2223444444 455667666665532 221 2
Q ss_pred CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc-----C-CCEEEEeeeC
Q 022892 171 GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV-----G-VDGVFMEVHD 243 (290)
Q Consensus 171 ~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~-----G-A~G~~IEkH~ 243 (290)
+| |+..+..+++ .++||++- +|.+.. ..+.. +..+ | ++|+++=+-+
T Consensus 174 G~-----d~el~~~l~~~~~~pvias--------------------GGv~s~-~Dl~~-l~~~~~~~~g~v~gvivg~Al 226 (241)
T PRK14114 174 EH-----DFSLTRKIAIEAEVKVFAA--------------------GGISSE-NSLKT-AQRVHRETNGLLKGVIVGRAF 226 (241)
T ss_pred Cc-----CHHHHHHHHHHCCCCEEEE--------------------CCCCCH-HHHHH-HHhcccccCCcEEEEEEehHH
Confidence 33 6677888877 78999871 122211 22332 2333 6 9999998876
Q ss_pred CCCCCCCCCCCCCChHHHHHH
Q 022892 244 DPLNAPVDGPTQWPLRNLEEL 264 (290)
Q Consensus 244 t~dka~~D~~~sl~p~~l~~l 264 (290)
|.-.++++++.+.
T Consensus 227 --------~~g~i~~~e~~~~ 239 (241)
T PRK14114 227 --------LEGILTVEVMKRY 239 (241)
T ss_pred --------HCCCCCHHHHHHh
Confidence 5556777665443
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.4 Score=44.73 Aligned_cols=85 Identities=15% Similarity=0.070 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCcEEEeec------------CcccHHH----Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEe
Q 022892 74 EGLKILEKVKIAYDIPIVTDVH------------ETVQCEE----VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIK 136 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~------------d~~~~~~----l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVils 136 (290)
+.+..+.+.|+++|+|++..++ |++.+-+ -++ .+|++|+.--... ..|-+.+...+.||+++
T Consensus 130 ~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~-e~F~~vv~~~~vpVvia 208 (265)
T COG1830 130 ENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP-ESFRRVVAACGVPVVIA 208 (265)
T ss_pred HHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh-HHHHHHHHhCCCCEEEe
Confidence 4566688899999999998432 3333332 223 4888888654433 35656677888999999
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCC
Q 022892 137 KGQFC-ASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 137 tG~~~-tl~e~~~Ave~i~~~Gn~ 159 (290)
=|... +..|.++-+.-+..+|..
T Consensus 209 GG~k~~~~~~~l~~~~~ai~aGa~ 232 (265)
T COG1830 209 GGPKTETEREFLEMVTAAIEAGAM 232 (265)
T ss_pred CCCCCCChHHHHHHHHHHHHccCc
Confidence 99997 888888888777666653
|
|
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.4 Score=46.38 Aligned_cols=122 Identities=14% Similarity=0.096 Sum_probs=73.5
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee--cCc---------------c----cHH
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV--HET---------------V----QCE 101 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~--~d~---------------~----~~~ 101 (290)
+.++|+|+|+...|.- |-..+.- +. .....+..+.+.|++.|+|++.++ +.. + .+.
T Consensus 115 a~~~GAdAVk~lv~~~-~d~~~~~-~~-~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r 191 (340)
T PRK12858 115 IKEAGADAVKLLLYYR-PDEDDAI-ND-RKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTME 191 (340)
T ss_pred HHHcCCCEEEEEEEeC-CCcchHH-HH-HHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHH
Confidence 3447999999987762 1101000 00 002457778899999999999984 332 1 122
Q ss_pred HHh--h-hcceecccCC-cc-------------CCH---H-HHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC-
Q 022892 102 EVG--K-VADIIQIPAF-LC-------------RQT---D-LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNP- 159 (290)
Q Consensus 102 ~l~--~-~~d~~kIgs~-~~-------------~n~---~-lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~- 159 (290)
.+. + .+|++|+.-- ++ +.. . +-+.+..++.|+++-.|-. +.+++.+.++.....|..
T Consensus 192 ~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f 270 (340)
T PRK12858 192 EFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEFACEAGADF 270 (340)
T ss_pred HHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHHHHHcCCCc
Confidence 333 3 4899999543 11 222 3 3333556899988855555 788899998887777653
Q ss_pred cEEEEeecC
Q 022892 160 NVMVCERGT 168 (290)
Q Consensus 160 ~i~L~~~gs 168 (290)
.=++|=|.+
T Consensus 271 ~Gvl~GRni 279 (340)
T PRK12858 271 SGVLCGRAT 279 (340)
T ss_pred cchhhhHHH
Confidence 345555544
|
|
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=94.70 E-value=2.5 Score=40.97 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=112.9
Q ss_pred cCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCC-hhHHHHHHHHHHHhcCCcEEEeecCcccHH
Q 022892 23 PNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPG-MVEGLKILEKVKIAYDIPIVTDVHETVQCE 101 (290)
Q Consensus 23 pcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~-~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~ 101 (290)
++..-+.++-+++|++|.+ +|++.|--.+|- .|+-.|. ++ -++-++.+++ ..+..+..-+.+.+.++
T Consensus 61 ~g~~~s~e~Ki~ia~~L~~----~GV~~IEvGs~v-spk~vPq----mad~~ev~~~i~~---~~~~~~~~l~~n~~die 128 (347)
T PLN02746 61 EKNIVPTSVKVELIQRLVS----SGLPVVEATSFV-SPKWVPQ----LADAKDVMAAVRN---LEGARFPVLTPNLKGFE 128 (347)
T ss_pred CCCCCCHHHHHHHHHHHHH----cCCCEEEECCCc-Ccccccc----cccHHHHHHHHHh---ccCCceeEEcCCHHHHH
Confidence 3433367888999999988 499988766553 2332222 11 1223444433 23344434345888998
Q ss_pred HHhh-hcceeccc--CCcc--------CCH-------HHHHHHHhcCCeEE--EeC-------CCCCCHHHHHHHHHHHH
Q 022892 102 EVGK-VADIIQIP--AFLC--------RQT-------DLLVAAAKTGKIIN--IKK-------GQFCASSVMVNSAEKVR 154 (290)
Q Consensus 102 ~l~~-~~d~~kIg--s~~~--------~n~-------~lL~~~a~~~~PVi--lst-------G~~~tl~e~~~Ave~i~ 154 (290)
...+ .++.+.|. +.+. +-. +.++.+-+.|+.|. +++ |.. +++.+.+.++.+.
T Consensus 129 ~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~-~~~~l~~~~~~~~ 207 (347)
T PLN02746 129 AAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPV-PPSKVAYVAKELY 207 (347)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCC-CHHHHHHHHHHHH
Confidence 8877 58876555 2221 111 24444456677775 554 444 7899999999999
Q ss_pred HcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCC-CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc
Q 022892 155 LAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANC-PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV 232 (290)
Q Consensus 155 ~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~-pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~ 232 (290)
..|-+.|.|+.-...- .|.. +- .-+..+++ ++. ||.+ +.|-. +.+...-+.+|+.+
T Consensus 208 ~~Gad~I~l~DT~G~a-~P~~-v~-~lv~~l~~~~~~~~i~~-H~Hnd------------------~GlA~AN~lAA~~a 265 (347)
T PLN02746 208 DMGCYEISLGDTIGVG-TPGT-VV-PMLEAVMAVVPVDKLAV-HFHDT------------------YGQALANILVSLQM 265 (347)
T ss_pred HcCCCEEEecCCcCCc-CHHH-HH-HHHHHHHHhCCCCeEEE-EECCC------------------CChHHHHHHHHHHh
Confidence 9999888888876531 2221 11 34555666 664 7888 77753 22334557789999
Q ss_pred CCCEEEEeeeCC
Q 022892 233 GVDGVFMEVHDD 244 (290)
Q Consensus 233 GA~G~~IEkH~t 244 (290)
||+ +++.-+.
T Consensus 266 Ga~--~vd~sv~ 275 (347)
T PLN02746 266 GIS--TVDSSVA 275 (347)
T ss_pred CCC--EEEEecc
Confidence 998 7887665
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.43 Score=46.26 Aligned_cols=112 Identities=22% Similarity=0.183 Sum_probs=81.4
Q ss_pred eecccCCccCCHHHHHHH-----HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCchhH
Q 022892 109 IIQIPAFLCRQTDLLVAA-----AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNL 182 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~-----a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i 182 (290)
--..||+.+.|.+|+.++ +.++.||-+|-=.+.++++-.+=+..+..+|...+.+-=|+-.- +.-..-+|+.+|
T Consensus 115 ~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i 194 (358)
T KOG2335|consen 115 RGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAI 194 (358)
T ss_pred cCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHH
Confidence 456899999999988553 46899999998888888888888888888998766665554321 211234799999
Q ss_pred HHHHh-cC-CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 183 EWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 183 ~~lk~-~~-~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
..+|+ .. +||+.+.+= ..+..+-+....-||+|+|.=.
T Consensus 195 ~~v~~~~~~ipviaNGnI---------------------~~~~d~~~~~~~tG~dGVM~ar 234 (358)
T KOG2335|consen 195 KAVRENVPDIPVIANGNI---------------------LSLEDVERCLKYTGADGVMSAR 234 (358)
T ss_pred HHHHHhCcCCcEEeeCCc---------------------CcHHHHHHHHHHhCCceEEecc
Confidence 99998 55 999885321 1124556666678999999865
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=3.2 Score=37.82 Aligned_cols=185 Identities=18% Similarity=0.193 Sum_probs=106.0
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChh----HH-----HHHHHHHHHhcC
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMV----EG-----LKILEKVKIAYD 87 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~----~~-----l~~L~~~~~~~G 87 (290)
+|+.||=- |.+...++++.|.+ . +|++=.+. |-+.|. ..|.-++ .. ++.++++++...
T Consensus 8 ~y~~~G~p---~~~~~~~~~~~l~~----~-ad~iElgi----p~sdp~-adG~~i~~~~~~a~~~g~~~~v~~vr~~~~ 74 (244)
T PRK13125 8 VYLTAGYP---NVESFKEFIIGLVE----L-VDILELGI----PPKYPK-YDGPVIRKSHRKVKGLDIWPLLEEVRKDVS 74 (244)
T ss_pred EEEeCCCC---CHHHHHHHHHHHHh----h-CCEEEECC----CCCCCC-CCCHHHHHHHHHHHHcCcHHHHHHHhccCC
Confidence 46666644 56778888888865 3 88876653 222222 1222121 22 367888887788
Q ss_pred CcEEE----e--ecCccc-HHHHhh-hcceecccC--Cc-c-CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 88 IPIVT----D--VHETVQ-CEEVGK-VADIIQIPA--FL-C-RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 88 i~~~s----~--~~d~~~-~~~l~~-~~d~~kIgs--~~-~-~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
+|+.- . ..++.. ++.+.+ .++.+-|.. .+ . .-..+++.+-+.|+.+++--...-+.++++..++.
T Consensus 75 ~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~--- 151 (244)
T PRK13125 75 VPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL--- 151 (244)
T ss_pred CCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh---
Confidence 89742 2 223333 444444 588888874 22 1 22357777888888766666665256777665542
Q ss_pred cCCCcEEEEeecCCCCCCC-CCCCc-hhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH
Q 022892 156 AGNPNVMVCERGTMFGYND-LIVDP-RNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA 231 (290)
Q Consensus 156 ~Gn~~i~L~~~gs~~~y~~-~~~dL-~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva 231 (290)
.+.++++ +++.++.. ...++ ..+..+|+ . +.||.+|..=. . +.-+..+..
T Consensus 152 --~~~~l~m--sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~-----------------~-----~e~i~~~~~ 205 (244)
T PRK13125 152 --SPLFIYY--GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLD-----------------S-----PEDARDALS 205 (244)
T ss_pred --CCCEEEE--EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcC-----------------C-----HHHHHHHHH
Confidence 2346655 33322211 11222 35666777 4 57887753321 1 345556678
Q ss_pred cCCCEEEEeeeC
Q 022892 232 VGVDGVFMEVHD 243 (290)
Q Consensus 232 ~GA~G~~IEkH~ 243 (290)
.||||+++=+.+
T Consensus 206 ~gaD~vvvGSai 217 (244)
T PRK13125 206 AGADGVVVGTAF 217 (244)
T ss_pred cCCCEEEECHHH
Confidence 999999999877
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=3.2 Score=37.26 Aligned_cols=137 Identities=19% Similarity=0.154 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCCcEEEeecCcc---------cHHHHhh-hcceecccCCccC-----CHHHHHHHHhcCCeEEEeCCCC
Q 022892 76 LKILEKVKIAYDIPIVTDVHETV---------QCEEVGK-VADIIQIPAFLCR-----QTDLLVAAAKTGKIINIKKGQF 140 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~---------~~~~l~~-~~d~~kIgs~~~~-----n~~lL~~~a~~~~PVilstG~~ 140 (290)
+..|..++++.++++.+.-++.. .++.+.+ .++++-|+-.+-. -..+++.+-+.|..+++..|
T Consensus 45 ~~~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~-- 122 (223)
T PRK04302 45 ALDIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVN-- 122 (223)
T ss_pred HHHHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcC--
Confidence 33444444455777776443332 2566666 5777777763211 11456667778998888887
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEee----cCCC---CCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCC
Q 022892 141 CASSVMVNSAEKVRLAGNPNVMVCER----GTMF---GYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGG 211 (290)
Q Consensus 141 ~tl~e~~~Ave~i~~~Gn~~i~L~~~----gs~~---~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~ 211 (290)
+.+++..+ ...|. .++-++- |+.. .++...+. ..+..+++ . ++||++-..=.
T Consensus 123 -~~~~~~~~----~~~~~-~~I~~~p~~~igt~~~~~~~~~~~i~-~~~~~ir~~~~~~pvi~GggI~------------ 183 (223)
T PRK04302 123 -NPETSAAA----AALGP-DYVAVEPPELIGTGIPVSKAKPEVVE-DAVEAVKKVNPDVKVLCGAGIS------------ 183 (223)
T ss_pred -CHHHHHHH----hcCCC-CEEEEeCccccccCCCCCcCCHHHHH-HHHHHHHhccCCCEEEEECCCC------------
Confidence 46666643 23343 3443332 1110 12222121 33444665 3 68988722211
Q ss_pred CccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 212 GVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 212 ~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
. +..+..+...||||+++=+-+
T Consensus 184 -----~-----~e~~~~~~~~gadGvlVGsa~ 205 (223)
T PRK04302 184 -----T-----GEDVKAALELGADGVLLASGV 205 (223)
T ss_pred -----C-----HHHHHHHHcCCCCEEEEehHH
Confidence 1 344555677999999886654
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.46 Score=44.41 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=68.0
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCccc-------------HHHHhh-h
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQ-------------CEEVGK-V 106 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~-------------~~~l~~-~ 106 (290)
+.|-++|+|+|....|.- +. +. ...-+.+..+.+.|+++|+|++. ++ +.- +....+ .
T Consensus 101 eeAvrlGAdAV~~~v~~G----s~--~E-~~~l~~l~~v~~ea~~~G~Plla-~~-prG~~~~~~~~~ia~aaRiaaELG 171 (264)
T PRK08227 101 EDAVRLNACAVAAQVFIG----SE--YE-HQSIKNIIQLVDAGLRYGMPVMA-VT-AVGKDMVRDARYFSLATRIAAEMG 171 (264)
T ss_pred HHHHHCCCCEEEEEEecC----CH--HH-HHHHHHHHHHHHHHHHhCCcEEE-Ee-cCCCCcCchHHHHHHHHHHHHHHc
Confidence 345567888887766551 00 00 00113455677888999999998 22 322 112234 4
Q ss_pred cceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC
Q 022892 107 ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~ 159 (290)
+|++|+.--. ..|-+.+...+.||++.=|...+.+|+++-++-....|..
T Consensus 172 ADiVK~~y~~---~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~ 221 (264)
T PRK08227 172 AQIIKTYYVE---EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEGAS 221 (264)
T ss_pred CCEEecCCCH---HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 8999988653 3454556777899999999987777787777766666653
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.62 Score=44.05 Aligned_cols=137 Identities=13% Similarity=0.127 Sum_probs=89.1
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..|++..++-++.++-.+||.-++..+++ ..+.+.++|.-+.. .+|.| -.|.. +++|+...+..|..
T Consensus 5 ~~lr~~l~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~--------slG~p---D~g~l-~~~e~~~~~~~I~~ 72 (290)
T TIGR02321 5 QALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSA--------SYAVP---DANIL-SMSTHLEMMRAIAS 72 (290)
T ss_pred HHHHHHHhCCCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHH--------HCCCC---CcccC-CHHHHHHHHHHHHh
Confidence 35788888888888999999999888877 67777777764432 24666 33444 77777777665431
Q ss_pred cCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 156 AGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 156 ~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
..++||++|.+.+- |...-+....+....+|+.
T Consensus 73 -------------------------------~~~lPv~aD~d~Gy----------------G~~~~v~~tV~~~~~aGva 105 (290)
T TIGR02321 73 -------------------------------TVSIPLIADIDTGF----------------GNAVNVHYVVPQYEAAGAS 105 (290)
T ss_pred -------------------------------ccCCCEEEECCCCC----------------CCcHHHHHHHHHHHHcCCe
Confidence 03579999999874 3222234445566789999
Q ss_pred EEEEeeeCCCCCC--CCCCCCC-CChHHHHHHHHHHHHHHHHh
Q 022892 236 GVFMEVHDDPLNA--PVDGPTQ-WPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 236 G~~IEkH~t~dka--~~D~~~s-l~p~~l~~lv~~ir~~~~~l 275 (290)
|+.||-...|.+. +.+++.. .+++ ++++.|+.+..+.
T Consensus 106 gi~IEDq~~pk~cg~~~~g~~~l~~~e---e~~~kI~Aa~~a~ 145 (290)
T TIGR02321 106 AIVMEDKTFPKDTSLRTDGRQELVRIE---EFQGKIAAATAAR 145 (290)
T ss_pred EEEEeCCCCCcccccccCCCccccCHH---HHHHHHHHHHHhC
Confidence 9999987666552 1234333 3444 5555666555553
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=94.56 E-value=1.4 Score=40.90 Aligned_cols=177 Identities=12% Similarity=0.082 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-h
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-V 106 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~ 106 (290)
+.++..++++.|.+ +|++.|=..+ |..++.. .+..+.+.+...+.++ +..-..+.+.++...+ .
T Consensus 20 s~~~k~~i~~~L~~----~Gv~~IEvG~----P~~~~~~------~~~~~~l~~~~~~~~v-~~~~r~~~~di~~a~~~g 84 (262)
T cd07948 20 DTEDKIEIAKALDA----FGVDYIELTS----PAASPQS------RADCEAIAKLGLKAKI-LTHIRCHMDDARIAVETG 84 (262)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEEC----CCCCHHH------HHHHHHHHhCCCCCcE-EEEecCCHHHHHHHHHcC
Confidence 67788888888888 5998876653 3333221 1223333322222222 2223556667777666 5
Q ss_pred cceecccC--Cc--------c---CCHH----HHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 022892 107 ADIIQIPA--FL--------C---RQTD----LLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 107 ~d~~kIgs--~~--------~---~n~~----lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
++.+-|-- .+ . .+.+ .++++-..|..|-+. .....+++.+.+.++.+...|-..+.|+...
T Consensus 85 ~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~ 164 (262)
T cd07948 85 VDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTV 164 (262)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcC
Confidence 67655522 11 1 1122 223444556666554 3444468888888888888898877777765
Q ss_pred CCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 168 TMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 168 s~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.. -+|.. +. .-+..+++ +++|+++ +.|-. +.+...-+.+|+..||+ +++.-+
T Consensus 165 G~-~~P~~-v~-~~~~~~~~~~~~~i~~-H~Hn~------------------~Gla~an~~~a~~aG~~--~vd~s~ 217 (262)
T cd07948 165 GI-ATPRQ-VY-ELVRTLRGVVSCDIEF-HGHND------------------TGCAIANAYAALEAGAT--HIDTTV 217 (262)
T ss_pred CC-CCHHH-HH-HHHHHHHHhcCCeEEE-EECCC------------------CChHHHHHHHHHHhCCC--EEEEec
Confidence 53 13321 22 34556677 7789998 77753 22224456788999998 777654
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.28 Score=46.97 Aligned_cols=139 Identities=20% Similarity=0.138 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHH-----HhcC-CeEEEeCCCCCCHHH--
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAA-----AKTG-KIINIKKGQFCASSV-- 145 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~-----a~~~-~PVilstG~~~tl~e-- 145 (290)
+.+.+..+.+.+.|...+-==+--.+- .+-=-..||..+.|.+++.++ ...+ +||=+|.=..-+-.+
T Consensus 79 ~~l~eaA~~~~~~g~~~IdlN~GCP~~-----~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~ 153 (323)
T COG0042 79 ELLAEAAKIAEELGADIIDLNCGCPSP-----KVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDIL 153 (323)
T ss_pred HHHHHHHHHHHhcCCCEEeeeCCCChH-----HhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCccccc
Confidence 567777777777775443211111111 111234588899999877543 2343 899999877755554
Q ss_pred HHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cC-CCEEEeCC-CCCCCCCCCccCCCCccCCCCcccH
Q 022892 146 MVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADVT-HSLQQPAGKKLDGGGVASGGLRELI 222 (290)
Q Consensus 146 ~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~-~pV~~D~s-Hs~~~~~~~~~~~~~~~~~g~~~~~ 222 (290)
....+..+...|...+++-=|+-.-.|... .|+..|..+|+ .. +||+.+.+ .+
T Consensus 154 ~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~-ad~~~I~~vk~~~~~ipvi~NGdI~s----------------------- 209 (323)
T COG0042 154 ALEIARILEDAGADALTVHGRTRAQGYLGP-ADWDYIKELKEAVPSIPVIANGDIKS----------------------- 209 (323)
T ss_pred HHHHHHHHHhcCCCEEEEecccHHhcCCCc-cCHHHHHHHHHhCCCCeEEeCCCcCC-----------------------
Confidence 556666777777765555445432234322 79999999999 66 99988654 22
Q ss_pred HHHHHHHHH-cCCCEEEEee
Q 022892 223 PCIARTAIA-VGVDGVFMEV 241 (290)
Q Consensus 223 ~~~a~aAva-~GA~G~~IEk 241 (290)
..-++.... .|+||+||=.
T Consensus 210 ~~~a~~~l~~tg~DgVMigR 229 (323)
T COG0042 210 LEDAKEMLEYTGADGVMIGR 229 (323)
T ss_pred HHHHHHHHHhhCCCEEEEcH
Confidence 334444444 5799999864
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.78 Score=44.54 Aligned_cols=133 Identities=18% Similarity=0.105 Sum_probs=80.1
Q ss_pred HHHHHH-HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeC
Q 022892 121 DLLVAA-AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADV 196 (290)
Q Consensus 121 ~lL~~~-a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~ 196 (290)
+.|+.+ ..+++||++| |.. +.++.+.+++ .|-+-|++...|...-+. ....+..++.+++ . .+||+.|.
T Consensus 211 ~~l~~lr~~~~~PvivK-gv~-~~~dA~~a~~----~G~d~I~vsnhGGr~ld~-~~~~~~~l~~i~~a~~~~i~vi~dG 283 (351)
T cd04737 211 ADIEFIAKISGLPVIVK-GIQ-SPEDADVAIN----AGADGIWVSNHGGRQLDG-GPASFDSLPEIAEAVNHRVPIIFDS 283 (351)
T ss_pred HHHHHHHHHhCCcEEEe-cCC-CHHHHHHHHH----cCCCEEEEeCCCCccCCC-CchHHHHHHHHHHHhCCCCeEEEEC
Confidence 444555 4578999999 554 7888776654 577777776555432111 1134567777766 4 58998864
Q ss_pred CCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 197 THSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 197 sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
.=. .| ..+. .|+++||+|++|-.-+--.-+. ++.. --..-++.|.++++..-..+|
T Consensus 284 GIr----------------~g-----~Di~-kaLalGA~~V~iGr~~l~~la~-~G~~-gv~~~l~~l~~El~~~m~l~G 339 (351)
T cd04737 284 GVR----------------RG-----EHVF-KALASGADAVAVGRPVLYGLAL-GGAQ-GVASVLEHLNKELKIVMQLAG 339 (351)
T ss_pred CCC----------------CH-----HHHH-HHHHcCCCEEEECHHHHHHHhh-chHH-HHHHHHHHHHHHHHHHHHHHC
Confidence 432 13 3444 4688999999999865221100 1100 012356677777777777888
Q ss_pred CccccccC
Q 022892 277 GKQRMNID 284 (290)
Q Consensus 277 ~~~~~~~~ 284 (290)
.+++-++.
T Consensus 340 ~~~i~el~ 347 (351)
T cd04737 340 TRTIEDVK 347 (351)
T ss_pred CCCHHHhC
Confidence 77665543
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=4.3 Score=40.95 Aligned_cols=182 Identities=15% Similarity=0.176 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEecc---ccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEE--eec------
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKS---SFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVT--DVH------ 95 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~---~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s--~~~------ 95 (290)
+.+..++.|+.|.+ +|++.+=.. +|.. .++|-. ++.++.++++++. .+.++.+ ..-
T Consensus 23 ~t~dkl~Ia~~Ld~----~Gv~~IE~~ggatfd~-----~~~Fl~---e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~ 90 (467)
T PRK14041 23 RTEDMLPALEAFDR----MGFYSMEVWGGATFDV-----CVRFLN---ENPWERLKEIRKRLKNTKIQMLLRGQNLVGYR 90 (467)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEecCCccchh-----hhcccC---CCHHHHHHHHHHhCCCCEEEEEeccccccCcc
Confidence 56777888888887 498776431 1110 012321 3345555555544 3444433 321
Q ss_pred -Cccc-----HHHHhh-hcceecccCC--ccCCHH-HHHHHHhcCCeEE--Ee--CCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 96 -ETVQ-----CEEVGK-VADIIQIPAF--LCRQTD-LLVAAAKTGKIIN--IK--KGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 96 -d~~~-----~~~l~~-~~d~~kIgs~--~~~n~~-lL~~~a~~~~PVi--ls--tG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
.+++ ++...+ .+|++.|.-. +..|.. .++.+-+.|+-|. ++ .+.-.+++-+.+.++.+...|.+.|
T Consensus 91 ~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I 170 (467)
T PRK14041 91 HYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSI 170 (467)
T ss_pred cccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 2333 444444 5777766533 334443 3344556677655 22 1223378889999998999998888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
.|+.-.... .|. .+ ..-+..+|+ +++||.+ +.|.. .| +...-+.+|+.+||+ +|.
T Consensus 171 ~i~Dt~G~l-~P~-~v-~~Lv~~lk~~~~vpI~~-H~Hnt---------------~G---lA~AN~laAieaGad--~vD 226 (467)
T PRK14041 171 CIKDMAGLL-TPK-RA-YELVKALKKKFGVPVEV-HSHCT---------------TG---LASLAYLAAVEAGAD--MFD 226 (467)
T ss_pred EECCccCCc-CHH-HH-HHHHHHHHHhcCCceEE-EecCC---------------CC---cHHHHHHHHHHhCCC--EEE
Confidence 887766531 121 12 145666777 7899999 88864 12 225557789999998 788
Q ss_pred eeCCC
Q 022892 241 VHDDP 245 (290)
Q Consensus 241 kH~t~ 245 (290)
.-..+
T Consensus 227 ~sv~~ 231 (467)
T PRK14041 227 TAISP 231 (467)
T ss_pred eeccc
Confidence 76653
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=2.2 Score=44.24 Aligned_cols=211 Identities=16% Similarity=0.197 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEec---cccccCCCCCcccCCCCChhHHHHHHHHHHHh---cCCcEEE-------ee
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFK---SSFDKANRTSSKSFRGPGMVEGLKILEKVKIA---YDIPIVT-------DV 94 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~---~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~---~Gi~~~s-------~~ 94 (290)
+.++.+..|+.|-++ |++.+=. .+|.. .+.-++ +..|+.|+.+++. ..+-.+. -.
T Consensus 25 ~~~d~l~ia~~ld~~----G~~siE~~GGatf~~-------~~~~~~-e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~ 92 (593)
T PRK14040 25 RLDDMLPIAAKLDKV----GYWSLESWGGATFDA-------CIRFLG-EDPWERLRELKKAMPNTPQQMLLRGQNLLGYR 92 (593)
T ss_pred CHHHHHHHHHHHHHc----CCCEEEecCCcchhh-------hccccC-CCHHHHHHHHHHhCCCCeEEEEecCcceeccc
Confidence 567788888888884 9887643 11221 122222 3445555555432 2222222 22
Q ss_pred cCccc-----HHHHhh-hcceecccCCc--cCCHH-HHHHHHhcCCeE--EEe--CCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 95 HETVQ-----CEEVGK-VADIIQIPAFL--CRQTD-LLVAAAKTGKII--NIK--KGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 95 ~d~~~-----~~~l~~-~~d~~kIgs~~--~~n~~-lL~~~a~~~~PV--ils--tG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
..+++ ++...+ .+|++-|.... +.|.. .++.+-+.|+-+ .++ ...-.|++.+.+.++.+...|-+.|
T Consensus 93 ~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i 172 (593)
T PRK14040 93 HYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSL 172 (593)
T ss_pred cCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEE
Confidence 22333 555555 58888887432 23332 345555677753 233 2333488999999999998998878
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
.|+.-.... .|. .+. .-+..+|+ +++||++ ++|.. .| +...-+.+|+.+||+ +|.
T Consensus 173 ~i~Dt~G~l-~P~-~~~-~lv~~lk~~~~~pi~~-H~Hnt---------------~G---lA~An~laAieAGa~--~vD 228 (593)
T PRK14040 173 CIKDMAGLL-KPY-AAY-ELVSRIKKRVDVPLHL-HCHAT---------------TG---LSTATLLKAIEAGID--GVD 228 (593)
T ss_pred EECCCCCCc-CHH-HHH-HHHHHHHHhcCCeEEE-EECCC---------------Cc---hHHHHHHHHHHcCCC--EEE
Confidence 887765531 111 122 45667777 8899999 88874 13 224556788999998 777
Q ss_pred eeCCCCCCC---------------CCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 241 VHDDPLNAP---------------VDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 241 kH~t~dka~---------------~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
.-+..=-.. .+...-++++.|.++-+.++++...
T Consensus 229 ~ai~glG~~~Gn~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~~~ 277 (593)
T PRK14040 229 TAISSMSMTYGHSATETLVATLEGTERDTGLDILKLEEIAAYFREVRKK 277 (593)
T ss_pred eccccccccccchhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 655431110 1223346666666555555555443
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.72 Score=44.56 Aligned_cols=162 Identities=11% Similarity=0.053 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCC-cEEE---eecCcccHHHHhhh
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDI-PIVT---DVHETVQCEEVGKV 106 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi-~~~s---~~~d~~~~~~l~~~ 106 (290)
...++|..|.+. |.-.++--.|. ++++..+.++...+.+. ..++ .+.|.+-++.|.+.
T Consensus 57 ~~~~mA~~la~~----g~~~~iHk~~~--------------~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a 118 (343)
T TIGR01305 57 GTFEMAAALSQH----SIFTAIHKHYS--------------VDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEA 118 (343)
T ss_pred cCHHHHHHHHHC----CCeEEEeeCCC--------------HHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhc
Confidence 457888887763 64444432222 35667777665544332 2223 34455555555552
Q ss_pred ---cceecccCCccCCH---HHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-----eecCCC----
Q 022892 107 ---ADIIQIPAFLCRQT---DLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-----ERGTMF---- 170 (290)
Q Consensus 107 ---~d~~kIgs~~~~n~---~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~-----~~gs~~---- 170 (290)
+|++.|-+..=.+. +.++.+-+ .+.+.+++=+.. |.+..+++++ .|-+-+.+. -|+++-
T Consensus 119 ~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~-T~e~a~~Li~----aGAD~ikVgiGpGSicttR~~~Gv 193 (343)
T TIGR01305 119 VPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVV-TGEMVEELIL----SGADIVKVGIGPGSVCTTRTKTGV 193 (343)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEeccc-CHHHHHHHHH----cCCCEEEEcccCCCcccCceeCCC
Confidence 78888877766444 44455543 355677776677 9988887654 577666666 687751
Q ss_pred CCCCCCCCchhHHHHHh----cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 171 GYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 171 ~y~~~~~dL~~i~~lk~----~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
++| .+.+++...+ +++||+.|.-=- ++| .+++ |+++||+.+||=.
T Consensus 194 g~p----qltAv~~~a~aa~~~~v~VIaDGGIr---------------~~g------DI~K-ALA~GAd~VMlG~ 242 (343)
T TIGR01305 194 GYP----QLSAVIECADAAHGLKGHIISDGGCT---------------CPG------DVAK-AFGAGADFVMLGG 242 (343)
T ss_pred CcC----HHHHHHHHHHHhccCCCeEEEcCCcC---------------chh------HHHH-HHHcCCCEEEECH
Confidence 344 3566666544 478998874321 122 4554 6899999999864
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.53 Score=46.01 Aligned_cols=132 Identities=19% Similarity=0.122 Sum_probs=80.1
Q ss_pred HHHHHH-HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeC
Q 022892 121 DLLVAA-AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADV 196 (290)
Q Consensus 121 ~lL~~~-a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~ 196 (290)
+.|+.+ ..++.||++| |.. +.++.+.++ ..|-.-|.+.-.|.+-.|.. ..++..++.+++ . .+||++|.
T Consensus 218 ~~i~~l~~~~~~PvivK-Gv~-~~eda~~a~----~~Gvd~I~VS~HGGrq~~~~-~a~~~~L~ei~~av~~~i~vi~dG 290 (367)
T TIGR02708 218 RDIEEIAGYSGLPVYVK-GPQ-CPEDADRAL----KAGASGIWVTNHGGRQLDGG-PAAFDSLQEVAEAVDKRVPIVFDS 290 (367)
T ss_pred HHHHHHHHhcCCCEEEe-CCC-CHHHHHHHH----HcCcCEEEECCcCccCCCCC-CcHHHHHHHHHHHhCCCCcEEeeC
Confidence 345655 4568999999 766 777777665 46877777766665422221 134567888876 4 48999874
Q ss_pred CCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 197 THSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 197 sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
.=-. | ..+. -|.++||++++|-..+--.-+. ++ +.--..-++.|..+++..-..+|
T Consensus 291 GIr~----------------g-----~Dv~-KaLalGAd~V~igR~~l~~la~-~G-~~gv~~~l~~l~~El~~~M~l~G 346 (367)
T TIGR02708 291 GVRR----------------G-----QHVF-KALASGADLVALGRPVIYGLAL-GG-SQGARQVFEYLNKELKRVMQLTG 346 (367)
T ss_pred CcCC----------------H-----HHHH-HHHHcCCCEEEEcHHHHHHHHh-cC-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 4321 3 3444 4678999999998875221111 11 00011245666677777777778
Q ss_pred Ccccccc
Q 022892 277 GKQRMNI 283 (290)
Q Consensus 277 ~~~~~~~ 283 (290)
.+++-++
T Consensus 347 ~~~i~eL 353 (367)
T TIGR02708 347 TQTIEDV 353 (367)
T ss_pred CCCHHHh
Confidence 7666544
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.14 Score=47.49 Aligned_cols=76 Identities=18% Similarity=0.085 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHH----HHHHHH---hcCCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTD----LLVAAA---KTGKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~----lL~~~a---~~~~PVilstG~~~tl~ 144 (290)
.+.+++|.++++++|+.+++|++|.+.++...+ ..+++-|-.|+++.+. --+.++ .....++-..|.. |++
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~-~~~ 220 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGIS-TPE 220 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCC-CHH
Confidence 466999999999999999999999999999877 6889999999884432 112222 2345677778888 888
Q ss_pred HHHHH
Q 022892 145 VMVNS 149 (290)
Q Consensus 145 e~~~A 149 (290)
|+...
T Consensus 221 dv~~l 225 (254)
T COG0134 221 DVRRL 225 (254)
T ss_pred HHHHH
Confidence 88764
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.78 Score=46.61 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=84.3
Q ss_pred CCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEE
Q 022892 13 AAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIV 91 (290)
Q Consensus 13 ~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~ 91 (290)
..+++.+=|-.+. + ...++.++.|++ +|+|+|....- +|.. ...|..++++.+++ +++++
T Consensus 233 ~~~~l~vgaavg~--~-~~~~~r~~~l~~----ag~d~i~iD~~-----------~g~~-~~~~~~i~~ik~~~p~~~vi 293 (505)
T PLN02274 233 KDGKLLVGAAIGT--R-ESDKERLEHLVK----AGVDVVVLDSS-----------QGDS-IYQLEMIKYIKKTYPELDVI 293 (505)
T ss_pred CCCCEEEEEEEcC--C-ccHHHHHHHHHH----cCCCEEEEeCC-----------CCCc-HHHHHHHHHHHHhCCCCcEE
Confidence 3457666665554 3 345899999998 49999987541 1222 35567777777777 68886
Q ss_pred E-eecCcccHHHHhh-hcceeccc--CC--------------ccCCHHHHHHHH-hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 92 T-DVHETVQCEEVGK-VADIIQIP--AF--------------LCRQTDLLVAAA-KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 92 s-~~~d~~~~~~l~~-~~d~~kIg--s~--------------~~~n~~lL~~~a-~~~~PVilstG~~~tl~e~~~Ave 151 (290)
. .+-..+.+..+.+ .+|++++| ++ ..+...++.+++ ..+.|||..-|.. +..++..|..
T Consensus 294 ~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~-~~~di~kAla 371 (505)
T PLN02274 294 GGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGIS-NSGHIVKALT 371 (505)
T ss_pred EecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCC-CHHHHHHHHH
Confidence 5 8999999999888 79999886 22 112333455544 4689999999999 9999998865
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.96 Score=45.83 Aligned_cols=118 Identities=18% Similarity=0.209 Sum_probs=79.5
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s 92 (290)
.+++.|=|-.+. +.+ .++.++.|++ +|+++|-...-. |.. ...++.++++.+++ +++++.
T Consensus 227 ~GrL~Vgaavg~--~~~-~~~~~~~l~~----ag~d~i~id~a~-----------G~s-~~~~~~i~~ik~~~~~~~v~a 287 (495)
T PTZ00314 227 NGQLLVGAAIST--RPE-DIERAAALIE----AGVDVLVVDSSQ-----------GNS-IYQIDMIKKLKSNYPHVDIIA 287 (495)
T ss_pred CCCEEEEEEECC--CHH-HHHHHHHHHH----CCCCEEEEecCC-----------CCc-hHHHHHHHHHHhhCCCceEEE
Confidence 456666455443 343 4899999988 599998765311 111 23355566666665 789888
Q ss_pred -eecCcccHHHHhh-hcceeccc--CCc-c-C---------CHHHH----HHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 93 -DVHETVQCEEVGK-VADIIQIP--AFL-C-R---------QTDLL----VAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 93 -~~~d~~~~~~l~~-~~d~~kIg--s~~-~-~---------n~~lL----~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
++.+++.+..+.+ .+|++++| ++. + + +...+ +.+.+.+.|||-.=|.. +..|+..|..
T Consensus 288 G~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~-~~~di~kAla 364 (495)
T PTZ00314 288 GNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIK-NSGDICKALA 364 (495)
T ss_pred CCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCC-CHHHHHHHHH
Confidence 9999999999888 79999975 331 1 1 22222 22334689999999998 9999999865
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=94.36 E-value=0.51 Score=42.06 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hccee
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADII 110 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~ 110 (290)
.++-++.|.+ +|+++|-.+.-. |..| +.+..|.+..++.+..+|.++-+.++.....+ .+|++
T Consensus 53 T~~ev~~l~~----aGadIIAlDaT~---R~Rp---------~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I 116 (192)
T PF04131_consen 53 TLKEVDALAE----AGADIIALDATD---RPRP---------ETLEELIREIKEKYQLVMADISTLEEAINAAELGFDII 116 (192)
T ss_dssp SHHHHHHHHH----CT-SEEEEE-SS---SS-S---------S-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEE
T ss_pred CHHHHHHHHH----cCCCEEEEecCC---CCCC---------cCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEE
Confidence 4566777776 699999887644 3333 24666666667777999999999999988887 68876
Q ss_pred ccc--CC------ccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 111 QIP--AF------LCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 111 kIg--s~------~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
--- +. +--|++|++++.+.+.|||..=+.. |+++..+|.+ .|..-+++
T Consensus 117 ~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~-tpe~a~~al~----~GA~aVVV 172 (192)
T PF04131_consen 117 GTTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIH-TPEQAAKALE----LGAHAVVV 172 (192)
T ss_dssp E-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS---SHHHHHHHHH----TT-SEEEE
T ss_pred EcccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCC-CHHHHHHHHh----cCCeEEEE
Confidence 321 00 3467899999999999999998888 9999888765 46544443
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=94.36 E-value=3.2 Score=37.48 Aligned_cols=172 Identities=15% Similarity=0.147 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHh---hhcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVG---KVAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~---~~~d 108 (290)
-+++|+.+.+ .|++-+...-.+.. .+. ...+..+++.+++.-+.+--=+.+.++++.+. +.++
T Consensus 38 P~~~a~~~~~----~g~~~l~ivDLd~~--------~~~--~~n~~~i~~i~~~~~v~vgGGirs~e~~~~~~~~l~~a~ 103 (221)
T TIGR00734 38 PDDAAKVIEE----IGARFIYIADLDRI--------VGL--GDNFSLLSKLSKRVELIADCGVRSPEDLETLPFTLEFAS 103 (221)
T ss_pred HHHHHHHHHH----cCCCEEEEEEcccc--------cCC--cchHHHHHHHHhhCcEEEcCccCCHHHHHHHHhhhccce
Confidence 4788888875 59887776655521 111 24577777887775333334556666666552 3488
Q ss_pred eecccCCccCCHHHHHHHHhcCCeEEEeCCC---CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHH
Q 022892 109 IIQIPAFLCRQTDLLVAAAKTGKIINIKKGQ---FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWM 185 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~~~PVilstG~---~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~l 185 (290)
.+-||+..++|.+++++++.. .-+=.+.|. .+-.+......+.+...|. .+++.... +-+. ..-.|+..+..+
T Consensus 104 rvvigT~a~~~p~~l~~~~~v-vslD~~~g~v~~~g~~~~~~~~~~~~~~~g~-~ii~tdI~-~dGt-~~G~d~eli~~i 179 (221)
T TIGR00734 104 RVVVATETLDITELLRECYTV-VSLDFKEKFLDASGLFESLEEVRDFLNSFDY-GLIVLDIH-SVGT-MKGPNLELLTKT 179 (221)
T ss_pred EEeecChhhCCHHHHHHhhhE-EEEEeECCccccccccccHHHHHHHHHhcCC-EEEEEECC-cccc-CCCCCHHHHHHH
Confidence 889999999999999988620 011112232 1111233344455556675 55554433 2221 123577788888
Q ss_pred Hh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 186 RE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 186 k~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.+ ..+||++ + +|.+.. ..+. .....||+|+++=+-+
T Consensus 180 ~~~~~~pvia-~-------------------GGi~s~-ed~~-~l~~~Ga~~vivgsal 216 (221)
T TIGR00734 180 LELSEHPVML-G-------------------GGISGV-EDLE-LLKEMGVSAVLVATAV 216 (221)
T ss_pred HhhCCCCEEE-e-------------------CCCCCH-HHHH-HHHHCCCCEEEEhHHh
Confidence 77 7899987 1 121111 2232 3566799999986543
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=94.34 E-value=4.7 Score=37.93 Aligned_cols=179 Identities=16% Similarity=0.233 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEEeecCcccHHHHh---h-h
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVTDVHETVQCEEVG---K-V 106 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s~~~d~~~~~~l~---~-~ 106 (290)
.+++++.++++|++.+.+++.-- . +.+.. |.+ +.+.-....+.++++.+ +|++----+-..++.+. + .
T Consensus 25 n~e~~~avi~aAe~~~~PvIl~~-~---~~~~~--~~~-~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~G 97 (282)
T TIGR01859 25 NLEWTQAILEAAEEENSPVIIQV-S---EGAIK--YMG-GYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAG 97 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEc-C---cchhh--ccC-cHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcC
Confidence 47889999999999999877632 2 22221 211 12234456778889999 99887654333444433 3 5
Q ss_pred cceecccCCccC---CHHHH----HHHHhcCCeEEEeCCCC--------------CCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 107 ADIIQIPAFLCR---QTDLL----VAAAKTGKIINIKKGQF--------------CASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 107 ~d~~kIgs~~~~---n~~lL----~~~a~~~~PVilstG~~--------------~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
++.+++-..... |..+- +.+-..+.+|-..-|.. -+++|...++ ...|-+. +.+-
T Consensus 98 f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~---~~tgvD~-Lavs 173 (282)
T TIGR01859 98 FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFV---KETGVDY-LAAA 173 (282)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHH---HHHCcCE-Eeec
Confidence 788888777763 33322 22344677887666552 1556655544 4346543 4444
Q ss_pred ecCCCC-CCC-CCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 166 RGTMFG-YND-LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 166 ~gs~~~-y~~-~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
.|+.++ |+. ..+|+..+..+++ .++|++. |+- + |.. ..-.+.++..|++++=|=+.
T Consensus 174 ~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~---hGg-----------S----Gi~---~e~i~~~i~~Gi~kiNv~T~ 232 (282)
T TIGR01859 174 IGTSHGKYKGEPGLDFERLKEIKELTNIPLVL---HGA-----------S----GIP---EEQIKKAIKLGIAKINIDTD 232 (282)
T ss_pred cCccccccCCCCccCHHHHHHHHHHhCCCEEE---ECC-----------C----CCC---HHHHHHHHHcCCCEEEECcH
Confidence 555442 433 4578888888887 7899866 541 1 211 33455678889998755443
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.9 Score=38.17 Aligned_cols=168 Identities=18% Similarity=0.178 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhccee
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADII 110 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~ 110 (290)
...+.++++.+ .|.|+++-..-. +.. .+.+..+.+..+++.+|++-+|-++.++- ..+|.+
T Consensus 15 ~~~~~~~~~~~----~gtdai~vGGS~-----------~vt-~~~~~~~v~~ik~~~lPvilfp~~~~~i~---~~aDa~ 75 (223)
T TIGR01768 15 EADEIAKAAAE----SGTDAILIGGSQ-----------GVT-YEKTDTLIEALRRYGLPIILFPSNPTNVS---RDADAL 75 (223)
T ss_pred ccHHHHHHHHh----cCCCEEEEcCCC-----------ccc-HHHHHHHHHHHhccCCCEEEeCCCccccC---cCCCEE
Confidence 34456666655 699999875322 111 34566665556678899999998776654 567877
Q ss_pred cccCCcc-CCHHH--------HHHHHhcCC---e---EEEeCCCC-----------CCHHHHHHHHHHHHH-cCCCcEEE
Q 022892 111 QIPAFLC-RQTDL--------LVAAAKTGK---I---INIKKGQF-----------CASSVMVNSAEKVRL-AGNPNVMV 163 (290)
Q Consensus 111 kIgs~~~-~n~~l--------L~~~a~~~~---P---VilstG~~-----------~tl~e~~~Ave~i~~-~Gn~~i~L 163 (290)
-++|=.- +|... +..+.+.+. | +++--|.. -+.+|+..+...-.. -|- +++-
T Consensus 76 l~~svlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~-~~vY 154 (223)
T TIGR01768 76 FFPSVLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGM-PIIY 154 (223)
T ss_pred EEEEeecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCC-cEEE
Confidence 7777432 23222 222333331 2 22322221 144555554433222 143 6888
Q ss_pred EeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 164 CERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 164 ~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
++-|+.++- .+|...+..+++ . ++|+.+- +|.|. ...+..+..+|||++++=+
T Consensus 155 lE~gs~~g~---~v~~e~i~~v~~~~~~~pl~vG--------------------GGIrs--~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 155 LEAGSGAPE---PVPPELVAEVKKVLDKARLFVG--------------------GGIRS--VEKAREMAEAGADTIVTGN 209 (223)
T ss_pred EEecCCCCC---CcCHHHHHHHHHHcCCCCEEEe--------------------cCCCC--HHHHHHHHHcCCCEEEECc
Confidence 998876432 267788888888 6 8898761 12222 3456666777999998876
Q ss_pred eC
Q 022892 242 HD 243 (290)
Q Consensus 242 H~ 243 (290)
.+
T Consensus 210 ~~ 211 (223)
T TIGR01768 210 VI 211 (223)
T ss_pred HH
Confidence 65
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.1 Score=44.44 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=87.0
Q ss_pred hcceecccCCcc--CCHH-HHHHHHhcCCeEE----EeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC
Q 022892 106 VADIIQIPAFLC--RQTD-LLVAAAKTGKIIN----IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD 178 (290)
Q Consensus 106 ~~d~~kIgs~~~--~n~~-lL~~~a~~~~PVi----lstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d 178 (290)
.+|++-|..... .|.. -++++-+.|+-+. +....-.|++.+.+.++.+...|.+.|.|+.-.... .|. .+
T Consensus 109 Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l-~P~-~v- 185 (596)
T PRK14042 109 GVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLL-TPT-VT- 185 (596)
T ss_pred CCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCC-CHH-HH-
Confidence 466666665432 3332 3355556666332 223444599999999999999998878887765531 111 12
Q ss_pred chhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCC---------
Q 022892 179 PRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA--------- 248 (290)
Q Consensus 179 L~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka--------- 248 (290)
..-+..+|+ +++||.+ ++|.. .| +...-+.+|+.+||+ +|+.-+.+=-.
T Consensus 186 ~~lv~alk~~~~ipi~~-H~Hnt---------------~G---la~an~laAieaGad--~iD~ai~glGg~tGn~~tE~ 244 (596)
T PRK14042 186 VELYAGLKQATGLPVHL-HSHST---------------SG---LASICHYEAVLAGCN--HIDTAISSFSGGASHPPTEA 244 (596)
T ss_pred HHHHHHHHhhcCCEEEE-EeCCC---------------CC---cHHHHHHHHHHhCCC--EEEeccccccCCCCcHhHHH
Confidence 145666777 8899999 88874 13 224456788999998 78875543211
Q ss_pred ----C--CCCCCCCChHHHHHHHHHHHHHHH
Q 022892 249 ----P--VDGPTQWPLRNLEELLEELVAIAK 273 (290)
Q Consensus 249 ----~--~D~~~sl~p~~l~~lv~~ir~~~~ 273 (290)
+ ......++++.+.++-+.+++++.
T Consensus 245 lv~~L~~~g~~tgidl~~l~~~~~~~~~vr~ 275 (596)
T PRK14042 245 LVAALTDTPYDTELDLNILLEIDDYFKAVRK 275 (596)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 0 133445666666555555555443
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.28 E-value=3.3 Score=38.55 Aligned_cols=190 Identities=19% Similarity=0.210 Sum_probs=119.6
Q ss_pred hHHhhhcC-CCCeEEEEccCC-------ccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH
Q 022892 6 ALFNQLKA-AEPFFLLAGPNV-------IESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK 77 (290)
Q Consensus 6 ~~~~~i~~-~~~~~iIAgpcs-------ien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~ 77 (290)
.++..+.. .+++-+|||.-- |..+-.-.++|+...+ .|+.++-- .|-+..|+| .++
T Consensus 34 ~f~~AL~~~~~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~----~GAa~iSV-------LTd~~~F~G-----s~e 97 (254)
T COG0134 34 DFYAALKEASGKPAVIAEVKKASPSKGLIREDFDPVEIAKAYEE----GGAAAISV-------LTDPKYFQG-----SFE 97 (254)
T ss_pred cHHHHHHhcCCCceEEEEeecCCCCCCcccccCCHHHHHHHHHH----hCCeEEEE-------ecCccccCC-----CHH
Confidence 46666665 367899997421 2112223456666555 58877642 333444653 467
Q ss_pred HHHHHHHhcCCcEEE--eecCcccHHHHhh-hcceecccCCccCCH---HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVT--DVHETVQCEEVGK-VADIIQIPAFLCRQT---DLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~~n~---~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
.|++.+....+|++. =+.|+.++..... ..|++.+-..-+.+. .|+..+..+|+-+++... +.+|+..|++
T Consensus 98 ~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh---~~eEl~rAl~ 174 (254)
T COG0134 98 DLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVH---NEEELERALK 174 (254)
T ss_pred HHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEEC---CHHHHHHHHh
Confidence 788999999999999 4567888887766 688777666666544 566777789999999987 8999999876
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCC--EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 022892 152 KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCP--VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 229 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~p--V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aA 229 (290)
.|..=|-+=.| ++.+..+|+..-..|.. .+| +++ .+-| + ..+ +.=....
T Consensus 175 ----~ga~iIGINnR----dL~tf~vdl~~t~~la~-~~p~~~~~-IsES-------------G-I~~-----~~dv~~l 225 (254)
T COG0134 175 ----LGAKIIGINNR----DLTTLEVDLETTEKLAP-LIPKDVIL-ISES-------------G-IST-----PEDVRRL 225 (254)
T ss_pred ----CCCCEEEEeCC----CcchheecHHHHHHHHh-hCCCCcEE-EecC-------------C-CCC-----HHHHHHH
Confidence 34433333333 35566788888776654 122 222 2222 0 012 2223344
Q ss_pred HHcCCCEEEEeeeC
Q 022892 230 IAVGVDGVFMEVHD 243 (290)
Q Consensus 230 va~GA~G~~IEkH~ 243 (290)
...||+|++|=..+
T Consensus 226 ~~~ga~a~LVG~sl 239 (254)
T COG0134 226 AKAGADAFLVGEAL 239 (254)
T ss_pred HHcCCCEEEecHHH
Confidence 56799999987665
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.51 Score=46.00 Aligned_cols=131 Identities=19% Similarity=0.114 Sum_probs=80.2
Q ss_pred HHHHHH-HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCC
Q 022892 121 DLLVAA-AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTH 198 (290)
Q Consensus 121 ~lL~~~-a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sH 198 (290)
+.++.+ ...+.||++| |.. +.++.+.|++ .|-+-|.+...|... .+.....+..++.+++ .++||++|.-=
T Consensus 226 ~~i~~ir~~~~~pviiK-gV~-~~eda~~a~~----~G~d~I~VSnhGGrq-ld~~~~~~~~L~ei~~~~~~~vi~dGGI 298 (361)
T cd04736 226 QDLRWLRDLWPHKLLVK-GIV-TAEDAKRCIE----LGADGVILSNHGGRQ-LDDAIAPIEALAEIVAATYKPVLIDSGI 298 (361)
T ss_pred HHHHHHHHhCCCCEEEe-cCC-CHHHHHHHHH----CCcCEEEECCCCcCC-CcCCccHHHHHHHHHHHhCCeEEEeCCC
Confidence 345665 4578899999 676 9999988865 577777776666531 1111124567777777 78999886332
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCc
Q 022892 199 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGK 278 (290)
Q Consensus 199 s~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~ 278 (290)
- .| ..+. -|.++||+.++|-+.+--.-+ .++ ..--..-++.|.++++..=..+|-+
T Consensus 299 r----------------~g-----~Dv~-KALaLGA~aV~iGr~~l~~la-~~G-~~gv~~~l~~l~~el~~~m~l~G~~ 354 (361)
T cd04736 299 R----------------RG-----SDIV-KALALGANAVLLGRATLYGLA-ARG-EAGVSEVLRLLKEEIDRTLALIGCP 354 (361)
T ss_pred C----------------CH-----HHHH-HHHHcCCCEEEECHHHHHHHH-hcC-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 13 4455 479999999999988721110 010 0011124555666666666667766
Q ss_pred cccc
Q 022892 279 QRMN 282 (290)
Q Consensus 279 ~~~~ 282 (290)
++-+
T Consensus 355 ~i~~ 358 (361)
T cd04736 355 DIAS 358 (361)
T ss_pred CHHH
Confidence 5543
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=94.27 E-value=4.4 Score=39.29 Aligned_cols=176 Identities=11% Similarity=0.111 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEE-eecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVT-DVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s-~~~d~~~~~~l~~ 105 (290)
+.++.+++|+.|.++ |++.+=... |. .. +..++.++++.+. .+..+.+ ...+.+.++.+.+
T Consensus 21 s~~~k~~ia~~L~~~----Gv~~IEvG~----p~--------~~-~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~ 83 (365)
T TIGR02660 21 TAAEKLAIARALDEA----GVDELEVGI----PA--------MG-EEERAVIRAIVALGLPARLMAWCRARDADIEAAAR 83 (365)
T ss_pred CHHHHHHHHHHHHHc----CCCEEEEeC----CC--------CC-HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHc
Confidence 778889999999884 988775531 11 11 2334444444433 2233332 1135566666555
Q ss_pred -hcceecccCC--ccC-----------CH----HHHHHHHhcCCeEEEeCC--CCCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 106 -VADIIQIPAF--LCR-----------QT----DLLVAAAKTGKIINIKKG--QFCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 106 -~~d~~kIgs~--~~~-----------n~----~lL~~~a~~~~PVilstG--~~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
.++.+.|-.. +.. .. +.++++-+.|..|-++-- ...+++.+...++.+...|-..|.|+.
T Consensus 84 ~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~D 163 (365)
T TIGR02660 84 CGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFAD 163 (365)
T ss_pred CCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcc
Confidence 4665544432 210 11 345555567776666533 233678888888888888988777777
Q ss_pred ecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 166 RGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
..... .|.. +- .-+..+++ +++||++ +.|-. ..+...-+.+|+.+||+ .|+.-+.
T Consensus 164 T~G~~-~P~~-v~-~lv~~l~~~~~v~l~~-H~HNd------------------~GlA~ANalaA~~aGa~--~vd~tl~ 219 (365)
T TIGR02660 164 TVGIL-DPFS-TY-ELVRALRQAVDLPLEM-HAHND------------------LGMATANTLAAVRAGAT--HVNTTVN 219 (365)
T ss_pred cCCCC-CHHH-HH-HHHHHHHHhcCCeEEE-EecCC------------------CChHHHHHHHHHHhCCC--EEEEEee
Confidence 65431 2221 21 34566776 7899999 77753 22334557789999998 7776554
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.66 Score=44.33 Aligned_cols=137 Identities=11% Similarity=0.046 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecc-----cCCccCCHHHHHHH-----HhcCCeEEEeCCCCC--
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQI-----PAFLCRQTDLLVAA-----AKTGKIINIKKGQFC-- 141 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kI-----gs~~~~n~~lL~~~-----a~~~~PVilstG~~~-- 141 (290)
+.+.+..+.+.+.|...+-==+ .++.-++ ||..+.+.+++.++ ...++||-+|.-...
T Consensus 67 ~~~~~aA~~~~~~g~d~IDlN~----------GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~ 136 (318)
T TIGR00742 67 NDLAKCAKIAEKRGYDEINLNV----------GCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP 136 (318)
T ss_pred HHHHHHHHHHHhCCCCEEEEEC----------CCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 5566666666665544322111 3555444 78888998776553 235889999995432
Q ss_pred --CHHHHHHHHHHHHHcCCCcEEEEeecCC--CCCCC------CCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccC
Q 022892 142 --ASSVMVNSAEKVRLAGNPNVMVCERGTM--FGYND------LIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLD 209 (290)
Q Consensus 142 --tl~e~~~Ave~i~~~Gn~~i~L~~~gs~--~~y~~------~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~ 209 (290)
+.++....++.+...|- +.+-+|..+. -+|.. ..+|+..+..+++ . ++||+.+.+=.
T Consensus 137 ~~~~~~~~~~~~~l~~~G~-~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~---------- 205 (318)
T TIGR00742 137 LDSYEFLCDFVEIVSGKGC-QNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIK---------- 205 (318)
T ss_pred cchHHHHHHHHHHHHHcCC-CEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcC----------
Confidence 33556666777777775 4556676652 23422 1247778888887 6 89998753322
Q ss_pred CCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 210 GGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 210 ~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
. ..-+..... |+||+||=+-.-
T Consensus 206 -------s-----~~da~~~l~-g~dgVMigRgal 227 (318)
T TIGR00742 206 -------N-----SEQIKQHLS-HVDGVMVGREAY 227 (318)
T ss_pred -------C-----HHHHHHHHh-CCCEEEECHHHH
Confidence 1 122333333 999999987543
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.24 Score=45.96 Aligned_cols=76 Identities=17% Similarity=0.085 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHH----HHHHHH-h--cCCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTD----LLVAAA-K--TGKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~----lL~~~a-~--~~~PVilstG~~~tl~ 144 (290)
.+.++.|.++|+++|+.++.|+++.++++.+.+ ..+++-|-.|++..+. .-..+. . ....++-..|.. +.+
T Consensus 144 ~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~-~~~ 222 (254)
T PF00218_consen 144 DDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIK-TPE 222 (254)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-S-SHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCC-CHH
Confidence 467899999999999999999999999999877 6999999999884331 111222 1 235677778888 999
Q ss_pred HHHHH
Q 022892 145 VMVNS 149 (290)
Q Consensus 145 e~~~A 149 (290)
++...
T Consensus 223 d~~~l 227 (254)
T PF00218_consen 223 DARRL 227 (254)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88763
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=94.20 E-value=1.7 Score=45.12 Aligned_cols=182 Identities=20% Similarity=0.266 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEecc---ccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEE--eecCc----
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKS---SFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVT--DVHET---- 97 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~---~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s--~~~d~---- 97 (290)
+.+..+..|..|.+ +|++.+=.. +|+...| | +. ++.|+.|+++.+. -+.++.. ..-+.
T Consensus 24 ~t~d~l~ia~~l~~----~G~~~iE~~ggatfd~~~r-----f--l~-edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~ 91 (592)
T PRK09282 24 RTEDMLPIAEKLDK----VGFWSLEVWGGATFDVCIR-----Y--LN-EDPWERLRKLKKALPNTPLQMLLRGQNLVGYR 91 (592)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEecCCccchhhcc-----c--CC-ccHHHHHHHHHHhCCCCEEEEEeccccccccc
Confidence 45677888888877 498775432 2221111 1 11 3455555555544 2333332 22111
Q ss_pred --------ccHHHHhh-hcceecccCC--ccCCHH-HHHHHHhcCCeEE--Ee--CCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 98 --------VQCEEVGK-VADIIQIPAF--LCRQTD-LLVAAAKTGKIIN--IK--KGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 98 --------~~~~~l~~-~~d~~kIgs~--~~~n~~-lL~~~a~~~~PVi--ls--tG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
..++...+ .+|++.|... +..|.. .++.+-+.|+-|- ++ .+...+++.+.+.++.+...|-+.|
T Consensus 92 ~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I 171 (592)
T PRK09282 92 HYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSI 171 (592)
T ss_pred cccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 12344444 5777766543 334442 3344556677554 32 2333478999999999998998888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
.||.-.... .|. .+ ..-+..+|+ +++||++ +.|.. .| +...-+.+|+.+||+ +|.
T Consensus 172 ~i~Dt~G~~-~P~-~~-~~lv~~lk~~~~~pi~~-H~Hnt---------------~G---la~An~laAv~aGad--~vD 227 (592)
T PRK09282 172 CIKDMAGLL-TPY-AA-YELVKALKEEVDLPVQL-HSHCT---------------SG---LAPMTYLKAVEAGVD--IID 227 (592)
T ss_pred EECCcCCCc-CHH-HH-HHHHHHHHHhCCCeEEE-EEcCC---------------CC---cHHHHHHHHHHhCCC--EEE
Confidence 887765531 121 12 245566777 7899999 88874 12 225557789999998 788
Q ss_pred eeCCC
Q 022892 241 VHDDP 245 (290)
Q Consensus 241 kH~t~ 245 (290)
.-+.+
T Consensus 228 ~ai~g 232 (592)
T PRK09282 228 TAISP 232 (592)
T ss_pred eeccc
Confidence 76653
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.6 Score=41.08 Aligned_cols=133 Identities=17% Similarity=0.017 Sum_probs=77.8
Q ss_pred CHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEE
Q 022892 119 QTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVA 194 (290)
Q Consensus 119 n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~ 194 (290)
..+.++++.+ ++.||++|.= . +.++.+.+ ...|-.-|.+..+|..-.+ ....++..+..+++ . ++||+.
T Consensus 160 ~~~~i~~l~~~~~~pvivK~v-~-s~~~a~~a----~~~G~d~I~v~~~gG~~~~-~g~~~~~~l~~i~~~~~~~ipvia 232 (299)
T cd02809 160 TWDDLAWLRSQWKGPLILKGI-L-TPEDALRA----VDAGADGIVVSNHGGRQLD-GAPATIDALPEIVAAVGGRIEVLL 232 (299)
T ss_pred CHHHHHHHHHhcCCCEEEeec-C-CHHHHHHH----HHCCCCEEEEcCCCCCCCC-CCcCHHHHHHHHHHHhcCCCeEEE
Confidence 3466777654 5899999943 3 67776554 4467766666655542111 11235667777766 4 499987
Q ss_pred eCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 195 D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
+..=. .| .. +..+.++||+|++|=+-|-..-. ..+. .--.+.++.+.++++..-..
T Consensus 233 ~GGI~----------------~~-----~d-~~kal~lGAd~V~ig~~~l~~~~-~~g~-~~v~~~i~~l~~el~~~m~~ 288 (299)
T cd02809 233 DGGIR----------------RG-----TD-VLKALALGADAVLIGRPFLYGLA-AGGE-AGVAHVLEILRDELERAMAL 288 (299)
T ss_pred eCCCC----------------CH-----HH-HHHHHHcCCCEEEEcHHHHHHHH-hcCH-HHHHHHHHHHHHHHHHHHHH
Confidence 53322 12 23 34567899999999885421100 1111 01133566777777777777
Q ss_pred hCCccccc
Q 022892 275 SKGKQRMN 282 (290)
Q Consensus 275 lg~~~~~~ 282 (290)
+|.+++-+
T Consensus 289 ~G~~~i~~ 296 (299)
T cd02809 289 LGCASLAD 296 (299)
T ss_pred HCCCCHHH
Confidence 77765543
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >TIGR01232 lacD tagatose 1,6-diphosphate aldolase | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.41 Score=45.88 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCc-------ccHH------
Q 022892 35 MAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHET-------VQCE------ 101 (290)
Q Consensus 35 ~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~-------~~~~------ 101 (290)
-+++|++ .|+|+||+=-|.. |-.++.--+ .. ..-++.+-+.|++.||||+-|+... .+.+
T Consensus 111 s~~rike----~GadavK~Llyy~-pD~~~ein~-~k-~a~vervg~ec~a~dipf~lE~ltYd~~~~~~~~~~yak~kP 183 (325)
T TIGR01232 111 SAKRLKE----QGANAVKFLLYYD-VDDAEEINI-QK-KAYIERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEFAKVKP 183 (325)
T ss_pred cHHHHHH----hCCCeEEEEEEeC-CCCChHHHH-HH-HHHHHHHHHHHHHCCCCeEEEEeccCCCCCCCCcHHHHHhCh
Confidence 3788887 4999999866552 222221000 00 2446677788999999999997654 2232
Q ss_pred --------HHhh---hcceecccC---------Cc---c--CCH---HHHHH-HHhcCCe-EEEeCCCCCCHHHHHHHHH
Q 022892 102 --------EVGK---VADIIQIPA---------FL---C--RQT---DLLVA-AAKTGKI-INIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 102 --------~l~~---~~d~~kIgs---------~~---~--~n~---~lL~~-~a~~~~P-VilstG~~~tl~e~~~Ave 151 (290)
.+.+ .+|++||-. +. . +.. ..+++ ...+++| |+||.|.+ .+.....++
T Consensus 184 ~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~eq~~~~~~P~i~LSaGV~--~~~F~~~l~ 261 (325)
T TIGR01232 184 RKVNEAMKLFSEPRFNVDVLKVEVPVNVKYVEGFAEGEVVYTKEEAAQHFKDQDAATHLPYIYLSAGVS--AELFQETLK 261 (325)
T ss_pred HHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCCC--HHHHHHHHH
Confidence 2333 488999872 11 1 111 12233 2346787 78888866 889999999
Q ss_pred HHHHcCCC-cEEEEeecC
Q 022892 152 KVRLAGNP-NVMVCERGT 168 (290)
Q Consensus 152 ~i~~~Gn~-~i~L~~~gs 168 (290)
.-.+.|.. +=+||=|-+
T Consensus 262 ~A~~aGa~fsGvL~GRAt 279 (325)
T TIGR01232 262 FAHEAGAKFNGVLCGRAT 279 (325)
T ss_pred HHHHcCCCcceEEeehhh
Confidence 88887765 567776655
|
This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation. |
| >PRK06739 pyruvate kinase; Validated | Back alignment and domain information |
|---|
Probab=94.11 E-value=1.2 Score=43.38 Aligned_cols=131 Identities=13% Similarity=0.062 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC---CcEEEeecCcccHHHHhh---hccee
Q 022892 37 KHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD---IPIVTDVHETVQCEEVGK---VADII 110 (290)
Q Consensus 37 k~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G---i~~~s~~~d~~~~~~l~~---~~d~~ 110 (290)
++-++.+.+.|+|.|...+-.. .+.+..+++++.+.| +++++-+-..+.++-+.+ ..|.+
T Consensus 168 ~~di~f~~~~~vD~ia~SFVr~--------------~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgi 233 (352)
T PRK06739 168 KKDIQFLLEEDVDFIACSFVRK--------------PSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGI 233 (352)
T ss_pred HHHHHHHHHcCCCEEEECCCCC--------------HHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEE
Confidence 3345566778999887643221 477889999998874 789999988888877766 59999
Q ss_pred cccCCcc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 022892 111 QIPAFLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFG 171 (290)
Q Consensus 111 kIgs~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~ 171 (290)
-|+=+++ .|-.+++.+-..+||||+.|-|- .|-.|+-..+..+. .|-+-++|-.-+..-.
T Consensus 234 mVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~-dG~D~vMLS~ETA~G~ 312 (352)
T PRK06739 234 MIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVL-DGTNAVMLSAESASGE 312 (352)
T ss_pred EEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHH-hCCcEEEEcccccCCC
Confidence 9999887 34456677778899999888763 35577777777665 4666677754444323
Q ss_pred CCCCCCCchhHHHHHh
Q 022892 172 YNDLIVDPRNLEWMRE 187 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~ 187 (290)
||. .++.+|++
T Consensus 313 yPv-----eaV~~m~~ 323 (352)
T PRK06739 313 HPI-----ESVSTLRL 323 (352)
T ss_pred CHH-----HHHHHHHH
Confidence 774 46666654
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=94.10 E-value=4.3 Score=38.04 Aligned_cols=180 Identities=12% Similarity=0.039 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc----CCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY----DIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~----Gi~~~s~~~d~~~~~~l 103 (290)
+.++-+++|++|.+. +|++.+=..+|- .++.. .+.++.+.+..+.. ++.+++-+-....++.+
T Consensus 17 s~e~K~~i~~~L~~~---~Gv~~IEvg~~~----~s~~e------~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~A 83 (280)
T cd07945 17 SPSEKLNIAKILLQE---LKVDRIEVASAR----VSEGE------FEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDWI 83 (280)
T ss_pred CHHHHHHHHHHHHHH---hCCCEEEecCCC----CCHHH------HHHHHHHHHHhhhhccccCcEEEEecCcHHHHHHH
Confidence 678889999987542 599888766542 11110 12333333322221 45555444444556665
Q ss_pred hh-hcceecccCC--cc--------CCH-------HHHHHHHhcCCeEEEeCCCC-----CCHHHHHHHHHHHHHcCCCc
Q 022892 104 GK-VADIIQIPAF--LC--------RQT-------DLLVAAAKTGKIINIKKGQF-----CASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 104 ~~-~~d~~kIgs~--~~--------~n~-------~lL~~~a~~~~PVilstG~~-----~tl~e~~~Ave~i~~~Gn~~ 160 (290)
.+ .++.+.|... +. +-- +.++.+...|..|.+.-..+ .+++.+.+.++.+...|-..
T Consensus 84 ~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~ 163 (280)
T cd07945 84 KSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKR 163 (280)
T ss_pred HHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCE
Confidence 55 4676665531 11 111 23455566677666555432 27999999999999899888
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
|.|+..... ..|.. +. .-+..+++ + ++|+.+ +.|-. +.+...-+.+|+..||+ +
T Consensus 164 i~l~DT~G~-~~P~~-v~-~l~~~l~~~~~~~~i~~-H~Hnd------------------~Gla~AN~laA~~aGa~--~ 219 (280)
T cd07945 164 IMLPDTLGI-LSPFE-TY-TYISDMVKRYPNLHFDF-HAHND------------------YDLAVANVLAAVKAGIK--G 219 (280)
T ss_pred EEecCCCCC-CCHHH-HH-HHHHHHHhhCCCCeEEE-EeCCC------------------CCHHHHHHHHHHHhCCC--E
Confidence 888877653 12221 21 44556666 4 588998 77753 22334456788999998 7
Q ss_pred EeeeCC
Q 022892 239 MEVHDD 244 (290)
Q Consensus 239 IEkH~t 244 (290)
|+.-+.
T Consensus 220 vd~s~~ 225 (280)
T cd07945 220 LHTTVN 225 (280)
T ss_pred EEEecc
Confidence 887664
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.92 Score=45.30 Aligned_cols=105 Identities=18% Similarity=0.206 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE-eecCcccHHHHhh-h
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT-DVHETVQCEEVGK-V 106 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s-~~~d~~~~~~l~~-~ 106 (290)
+..++.++.|++ +|+++|....-. |.. ...++.++++.+++ +++++. ++.+++.+..+.+ .
T Consensus 223 ~~~~~r~~~L~~----aG~d~I~vd~a~-----------g~~-~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG 286 (450)
T TIGR01302 223 EFDKERAEALVK----AGVDVIVIDSSH-----------GHS-IYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG 286 (450)
T ss_pred hhHHHHHHHHHH----hCCCEEEEECCC-----------CcH-hHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC
Confidence 467888888888 499998765322 111 34566677777674 799877 9999999999988 7
Q ss_pred cceeccc--CCc--c---------CCHHHHHHH----HhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 107 ADIIQIP--AFL--C---------RQTDLLVAA----AKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 107 ~d~~kIg--s~~--~---------~n~~lL~~~----a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
+|+++|| ++. . .+...+.++ .+.+.||+-.-|.. +..++..|..
T Consensus 287 ad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~-~~~di~kAla 347 (450)
T TIGR01302 287 ADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIR-YSGDIVKALA 347 (450)
T ss_pred CCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCC-CHHHHHHHHH
Confidence 9999976 331 1 133343333 34689999999999 9999998865
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=5 Score=37.26 Aligned_cols=210 Identities=19% Similarity=0.222 Sum_probs=113.1
Q ss_pred EEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcc--------c-----CCCCChhHHHHHHHHHH-
Q 022892 18 FLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSK--------S-----FRGPGMVEGLKILEKVK- 83 (290)
Q Consensus 18 ~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~--------~-----~~g~~~~~~l~~L~~~~- 83 (290)
|+.||=- |.+..++.++.|.+ .|+|++=.+. |.+.|. + -.|..+.+.++++++++
T Consensus 17 yi~aG~P---~~~~~~~~~~~l~~----~Gad~iElGi----PfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~ 85 (258)
T PRK13111 17 YITAGDP---DLETSLEIIKALVE----AGADIIELGI----PFSDPVADGPVIQAASLRALAAGVTLADVFELVREIRE 85 (258)
T ss_pred EEeCCCC---CHHHHHHHHHHHHH----CCCCEEEECC----CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 5555532 56778888888877 5999987764 333332 0 02333456788899988
Q ss_pred HhcCCcEE-EeecCc---cc----HHHHhh-hcceecccCCcc-CCHHHHHHHHhcCC-eEEEeCCCCCCHHHHHHHHHH
Q 022892 84 IAYDIPIV-TDVHET---VQ----CEEVGK-VADIIQIPAFLC-RQTDLLVAAAKTGK-IINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 84 ~~~Gi~~~-s~~~d~---~~----~~~l~~-~~d~~kIgs~~~-~n~~lL~~~a~~~~-PVilstG~~~tl~e~~~Ave~ 152 (290)
+...+|++ -+-+++ .. ++.+.+ .+|-+-|+---. .-.++++.+.+.|. +|.|-+..+ +.+.++..++.
T Consensus 86 ~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t-~~eri~~i~~~ 164 (258)
T PRK13111 86 KDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTT-TDERLKKIASH 164 (258)
T ss_pred cCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHh
Confidence 55788843 344443 12 333334 477676752222 22245566667785 566577766 66666654432
Q ss_pred HHHcCCCcEEEEeecCCCCCCC-CCCCc-hhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 022892 153 VRLAGNPNVMVCERGTMFGYND-LIVDP-RNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 229 (290)
Q Consensus 153 i~~~Gn~~i~L~~~gs~~~y~~-~~~dL-~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aA 229 (290)
+.| -|-+..+-...+... ...++ ..+..+|+ +++||++-. ++ + . +.-+..+
T Consensus 165 --s~g--fIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGf--GI--------------~-~-----~e~v~~~ 218 (258)
T PRK13111 165 --ASG--FVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGF--GI--------------S-T-----PEQAAAI 218 (258)
T ss_pred --CCC--cEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEc--cc--------------C-C-----HHHHHHH
Confidence 222 233322211112211 11222 46777888 789987611 11 0 1 2333344
Q ss_pred HHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 230 IAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 230 va~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
.. +|||+++=+++. +.+.+. +-..++++++++.++.
T Consensus 219 ~~-~ADGviVGSaiv--~~~~~~--~~~~~~~~~~~~~l~~ 254 (258)
T PRK13111 219 AA-VADGVIVGSALV--KIIEEN--PEALEALAAFVKELKA 254 (258)
T ss_pred HH-hCCEEEEcHHHH--HHHHhc--chHHHHHHHHHHHHHH
Confidence 44 499999999874 111111 1235678888877764
|
|
| >PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.33 Score=46.04 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh---cc--eecccCCc-cCCHHHHHHHHhc--CCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV---AD--IIQIPAFL-CRQTDLLVAAAKT--GKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~---~d--~~kIgs~~-~~n~~lL~~~a~~--~~PVilstG~~~tl~ 144 (290)
.+-+....++++++.|..+=+||++++.+-.... +. +.-||-.. ++|...|+..-.. .--++||-++.+|+.
T Consensus 136 delid~y~~li~~YPIvsIEDpf~edD~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvt 215 (295)
T PF00113_consen 136 DELIDYYKDLIKKYPIVSIEDPFDEDDWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVT 215 (295)
T ss_dssp HHHHHHHHHHHHHS-EEEEESSS-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHH
T ss_pred HHHHHHHHHHHHhcCeEEEEccccccchHHHHHHHHhhhcceeeecccccccchhhhhccchhhhccchhhhhhhhHHHH
Confidence 3567789999999999888899999988766552 33 45555543 3899988886443 337999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecC
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
|..+|++..++.| -.+++.||..
T Consensus 216 e~lea~~~a~~~g-~~~vvS~rsg 238 (295)
T PF00113_consen 216 ETLEAVKLAKSAG-WGVVVSHRSG 238 (295)
T ss_dssp HHHHHHHHHHHTT--EEEEE--SS
T ss_pred HHHHHHHHHHHCC-ceeeccCCCC
Confidence 9999999998876 3688888865
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E .... |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=93.94 E-value=4.6 Score=37.53 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCeEEEeCCC------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cC-CCE
Q 022892 121 DLLVAAAKTGKIINIKKGQ------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPV 192 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~-~pV 192 (290)
++++.+-+.|..|.+. .+ ..+++.+.+.++.+...|...|.|+..... ..|.. + .+-+..+++ ++ +|+
T Consensus 123 ~~i~~ak~~G~~v~~~-~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~-~~P~~-v-~~lv~~l~~~~~~~~l 198 (273)
T cd07941 123 DSVAYLKSHGREVIFD-AEHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNGG-TLPHE-I-AEIVKEVRERLPGVPL 198 (273)
T ss_pred HHHHHHHHcCCeEEEe-EEeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-CCHHH-H-HHHHHHHHHhCCCCee
Confidence 3455566678888773 22 236777788888888889888877776553 12221 2 145566776 55 889
Q ss_pred EEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 193 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 193 ~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
++ +.|-. +.+...-+.+|+..||+ .|+.-+.
T Consensus 199 ~~-H~Hnd------------------~Gla~An~laA~~aGa~--~id~s~~ 229 (273)
T cd07941 199 GI-HAHND------------------SGLAVANSLAAVEAGAT--QVQGTIN 229 (273)
T ss_pred EE-EecCC------------------CCcHHHHHHHHHHcCCC--EEEEecc
Confidence 99 77863 22335557788999998 7787653
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=93.89 E-value=2.4 Score=39.53 Aligned_cols=181 Identities=15% Similarity=0.082 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-h
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-V 106 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~ 106 (290)
+.++-.++|+.|.++ |++.|=..+|-. |...|. +.-.+ ..++....-.+..+.+=+.....++...+ .
T Consensus 18 s~e~K~~i~~~L~~~----Gv~~IEvGs~~~-~~~~p~----~~d~~--~~~~~l~~~~~~~~~~~~~~~~dv~~A~~~g 86 (274)
T cd07938 18 PTEDKIELIDALSAA----GLRRIEVTSFVS-PKWVPQ----MADAE--EVLAGLPRRPGVRYSALVPNLRGAERALAAG 86 (274)
T ss_pred CHHHHHHHHHHHHHc----CCCEEEeCCCCC-cccccc----cCCHH--HHHhhcccCCCCEEEEECCCHHHHHHHHHcC
Confidence 678889999999984 999988877642 332221 11011 11222222235555554556667777666 5
Q ss_pred cceeccc--CCcc--------C---C----HHHHHHHHhcCCeEEE--e-------CCCCCCHHHHHHHHHHHHHcCCCc
Q 022892 107 ADIIQIP--AFLC--------R---Q----TDLLVAAAKTGKIINI--K-------KGQFCASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 107 ~d~~kIg--s~~~--------~---n----~~lL~~~a~~~~PVil--s-------tG~~~tl~e~~~Ave~i~~~Gn~~ 160 (290)
++++.+. +.+. + + .+.++.+-+.|+-|.+ + .|.. +++.+.+.++.+...|-+.
T Consensus 87 ~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~-~~~~~~~~~~~~~~~Ga~~ 165 (274)
T cd07938 87 VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV-PPERVAEVAERLLDLGCDE 165 (274)
T ss_pred cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC-CHHHHHHHHHHHHHcCCCE
Confidence 6665443 2221 1 0 1224455566776642 2 1233 7899999999888889888
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
|.|+...... .|.. + .+-+..+++ + ++||++ +.|-. +.+...-+.+|+.+||+ +
T Consensus 166 i~l~DT~G~~-~P~~-v-~~lv~~l~~~~~~~~i~~-H~Hnd------------------~GlA~AN~laA~~aGa~--~ 221 (274)
T cd07938 166 ISLGDTIGVA-TPAQ-V-RRLLEAVLERFPDEKLAL-HFHDT------------------RGQALANILAALEAGVR--R 221 (274)
T ss_pred EEECCCCCcc-CHHH-H-HHHHHHHHHHCCCCeEEE-EECCC------------------CChHHHHHHHHHHhCCC--E
Confidence 8887766531 2221 1 145666776 5 589999 77763 12335557789999998 7
Q ss_pred EeeeCC
Q 022892 239 MEVHDD 244 (290)
Q Consensus 239 IEkH~t 244 (290)
|+.-+.
T Consensus 222 id~t~~ 227 (274)
T cd07938 222 FDSSVG 227 (274)
T ss_pred EEEecc
Confidence 876654
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=93.78 E-value=3.4 Score=39.05 Aligned_cols=170 Identities=15% Similarity=0.149 Sum_probs=98.1
Q ss_pred HHHHHcCCCEEecc-ccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcceecccCCc
Q 022892 41 SISTKVGLPLVFKS-SFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD--VHETVQCEEVGK-VADIIQIPAFL 116 (290)
Q Consensus 41 ~~a~~~G~~~V~~~-~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~ 116 (290)
++|+++|+-+||-= ..-.++|...+--+ -.+.+.+++..+...||++.= .-...+++.|.+ .+|++- ++.-
T Consensus 22 ~~ae~aga~~v~~~~~~~~~~~~~~~v~R----~~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiID-aT~r 96 (283)
T cd04727 22 RIAEEAGAVAVMALERVPADIRAAGGVAR----MADPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMID-ESEV 96 (283)
T ss_pred HHHHHcCceEEeeeccCchhhhhcCCeee----cCCHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEe-ccCC
Confidence 56778998887751 11111233222111 245667777777889999873 333667777777 699983 2222
Q ss_pred cCC-HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC--------------------CCCCC-
Q 022892 117 CRQ-TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM--------------------FGYND- 174 (290)
Q Consensus 117 ~~n-~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~--------------------~~y~~- 174 (290)
.+- -+++..+-.. .-+.|-.+-+ |++|.++|++ .|-.=|-=..+|.. ++|+.
T Consensus 97 ~rP~~~~~~~iK~~-~~~l~MAD~s-tleEal~a~~----~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~ 170 (283)
T cd04727 97 LTPADEEHHIDKHK-FKVPFVCGAR-NLGEALRRIS----EGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEE 170 (283)
T ss_pred CCcHHHHHHHHHHH-cCCcEEccCC-CHHHHHHHHH----CCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 222 2355555332 2456667777 9999998875 34322211111110 11211
Q ss_pred --------CCCCchhHHHHHh-cCCCEE--EeCC-CCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 175 --------LIVDPRNLEWMRE-ANCPVV--ADVT-HSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 175 --------~~~dL~~i~~lk~-~~~pV~--~D~s-Hs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
...++..+..+++ .++||+ .... |+ +.-+..+..+||+|+++=+-
T Consensus 171 t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~T-----------------------pena~~v~e~GAdgVaVGSA 227 (283)
T cd04727 171 ELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVAT-----------------------PADAALMMQLGADGVFVGSG 227 (283)
T ss_pred HHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCC-----------------------HHHHHHHHHcCCCEEEEcHH
Confidence 2357777888877 789996 3111 12 45566678899999999887
Q ss_pred CC
Q 022892 243 DD 244 (290)
Q Consensus 243 ~t 244 (290)
++
T Consensus 228 I~ 229 (283)
T cd04727 228 IF 229 (283)
T ss_pred hh
Confidence 75
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=93.77 E-value=7.6 Score=38.34 Aligned_cols=179 Identities=18% Similarity=0.122 Sum_probs=102.0
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-ee
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-DV 94 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-~~ 94 (290)
+-+++|--.. +.+..++.++++.+ .|++++... + +.. ...+.+.++++++.++.+++. +.
T Consensus 4 ~~l~~alD~~--~~~~~~~~~~~~~~----~Gv~~ie~g-~-------p~~-----~~~~~~~i~~l~~~~~~~~ii~D~ 64 (430)
T PRK07028 4 PILQVALDLL--ELDRAVEIAKEAVA----GGADWIEAG-T-------PLI-----KSEGMNAIRTLRKNFPDHTIVADM 64 (430)
T ss_pred ceEEEEeccC--CHHHHHHHHHHHHh----cCCcEEEeC-C-------HHH-----HHhhHHHHHHHHHHCCCCEEEEEe
Confidence 3456665555 77778888877766 599988542 1 110 134677788888887754443 31
Q ss_pred cC----cccHHHHhh-hcceecccCC-ccCC-HHHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 95 HE----TVQCEEVGK-VADIIQIPAF-LCRQ-TDLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 95 ~d----~~~~~~l~~-~~d~~kIgs~-~~~n-~~lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
.- ...++.+.+ .++.+-+.+. +..+ ...++++-+.|+++++- +... +.+.+..+ .+.|-+.+.+ +
T Consensus 65 kl~d~g~~~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t-~~e~~~~a----~~~GaD~I~~-~ 138 (430)
T PRK07028 65 KTMDTGAIEVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVPD-PVKRAVEL----EELGVDYINV-H 138 (430)
T ss_pred eeccchHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCCC-HHHHHHHH----HhcCCCEEEE-E
Confidence 11 125666656 5888876433 2112 24666777789998872 2212 24444333 3457666644 4
Q ss_pred ecCC-CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 166 RGTM-FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 166 ~gs~-~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.|.. ..++. .-+..+..+++ +++||..+.--+ ..-+..+++.||+|+++=+-+
T Consensus 139 pg~~~~~~~~--~~~~~l~~l~~~~~iPI~a~GGI~-----------------------~~n~~~~l~aGAdgv~vGsaI 193 (430)
T PRK07028 139 VGIDQQMLGK--DPLELLKEVSEEVSIPIAVAGGLD-----------------------AETAAKAVAAGADIVIVGGNI 193 (430)
T ss_pred eccchhhcCC--ChHHHHHHHHhhCCCcEEEECCCC-----------------------HHHHHHHHHcCCCEEEEChHH
Confidence 4321 01111 12345666666 689998743211 334556788999999888776
Q ss_pred C
Q 022892 244 D 244 (290)
Q Consensus 244 t 244 (290)
.
T Consensus 194 ~ 194 (430)
T PRK07028 194 I 194 (430)
T ss_pred c
Confidence 4
|
|
| >PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.86 Score=43.71 Aligned_cols=125 Identities=18% Similarity=0.142 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcc----------------
Q 022892 35 MAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETV---------------- 98 (290)
Q Consensus 35 ~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~---------------- 98 (290)
-+++|++. |+|+||+=-|.. |-..+.--+ .. ..-++.+-+.|++.||||+-|+....
T Consensus 110 S~~rike~----GadavK~Llyy~-pD~~~~in~-~k-~a~vervg~eC~a~dipf~lE~ltY~~~~~d~~~~~yak~kP 182 (324)
T PRK12399 110 SAKRIKEE----GADAVKFLLYYD-VDEPDEINE-QK-KAYIERIGSECVAEDIPFFLEILTYDEKIADNGSVEYAKVKP 182 (324)
T ss_pred hHHHHHHh----CCCeEEEEEEEC-CCCCHHHHH-HH-HHHHHHHHHHHHHCCCCeEEEEeeccCcccccccHHHHhhCh
Confidence 47888874 999999866552 221111000 00 23456677789999999999865422
Q ss_pred -----cHHHHhh---hcceecc----------c--CCcc--CCHH----HHHHHHhcCCe-EEEeCCCCCCHHHHHHHHH
Q 022892 99 -----QCEEVGK---VADIIQI----------P--AFLC--RQTD----LLVAAAKTGKI-INIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 99 -----~~~~l~~---~~d~~kI----------g--s~~~--~n~~----lL~~~a~~~~P-VilstG~~~tl~e~~~Ave 151 (290)
.+..+.+ .+|++|| | ..+. +.-+ +-++...+++| |+||.|.+ .+.....++
T Consensus 183 ~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~--~~~F~~~l~ 260 (324)
T PRK12399 183 HKVNEAMKVFSKPRFGVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKEQDAATHLPYIYLSAGVS--AELFQETLV 260 (324)
T ss_pred HHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCCC--HHHHHHHHH
Confidence 2334433 4999999 3 2211 2111 22223346887 78888866 889999999
Q ss_pred HHHHcCCC-cEEEEeecC
Q 022892 152 KVRLAGNP-NVMVCERGT 168 (290)
Q Consensus 152 ~i~~~Gn~-~i~L~~~gs 168 (290)
.-...|.. +=+||=|-+
T Consensus 261 ~A~~aGa~fsGvL~GRAt 278 (324)
T PRK12399 261 FAHEAGAKFNGVLCGRAT 278 (324)
T ss_pred HHHHcCCCcceEEeehhh
Confidence 88887765 567776655
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=6.2 Score=36.76 Aligned_cols=223 Identities=14% Similarity=0.159 Sum_probs=122.0
Q ss_pred CCchhhHHhhhcCCCC---eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcc--------c---
Q 022892 1 MDPSTALFNQLKAAEP---FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSK--------S--- 66 (290)
Q Consensus 1 ~~~~~~~~~~i~~~~~---~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~--------~--- 66 (290)
|..-+..|..+. +++ +|+.||=- |.+..++.++.|.+ .|+|++=.+. |.+.|- +
T Consensus 1 M~~i~~~f~~~~-~~~ali~yi~aG~P---~~~~~~~~~~~l~~----~Gad~iElGi----PfSDP~aDGpvIq~a~~r 68 (263)
T CHL00200 1 MNTISNVFEKLD-KQCALIPFITAGDP---DIVITKKALKILDK----KGADIIELGI----PYSDPLADGPIIQEASNR 68 (263)
T ss_pred CchHHHHHHHhc-CCCcEEEEEeCCCC---CHHHHHHHHHHHHH----CCCCEEEECC----CCCCCCccCHHHHHHHHH
Confidence 333345566542 222 35555532 56778888888887 5999987764 222222 0
Q ss_pred --CCCCChhHHHHHHHHHHHhcCCc-EEEeecCcc-------cHHHHhh-hcceecccCCccCCH-HHHHHHHhcCC-eE
Q 022892 67 --FRGPGMVEGLKILEKVKIAYDIP-IVTDVHETV-------QCEEVGK-VADIIQIPAFLCRQT-DLLVAAAKTGK-II 133 (290)
Q Consensus 67 --~~g~~~~~~l~~L~~~~~~~Gi~-~~s~~~d~~-------~~~~l~~-~~d~~kIgs~~~~n~-~lL~~~a~~~~-PV 133 (290)
-.|..+...|++++++.++..+| ++-+-+++- -++.+.+ .+|-+-|+---.... ++++.+.+.|+ ||
T Consensus 69 AL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I 148 (263)
T CHL00200 69 ALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELI 148 (263)
T ss_pred HHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
Confidence 02333456788899988888888 444555541 1222333 477777776555433 45566666676 66
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC--CCC--Cc-hhHHHHHh-cCCCEEEeCCCCCCCCCCCc
Q 022892 134 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND--LIV--DP-RNLEWMRE-ANCPVVADVTHSLQQPAGKK 207 (290)
Q Consensus 134 ilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~--~~~--dL-~~i~~lk~-~~~pV~~D~sHs~~~~~~~~ 207 (290)
.+=+..+ +.+.+...++. +.| .+. |.|..+..- ..+ ++ ..+..+|+ +++||.++ -++
T Consensus 149 ~lv~PtT-~~eri~~i~~~--a~g---FIY--~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vG--FGI------- 211 (263)
T CHL00200 149 LLIAPTS-SKSRIQKIARA--APG---CIY--LVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILG--FGI------- 211 (263)
T ss_pred EEECCCC-CHHHHHHHHHh--CCC---cEE--EEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEE--CCc-------
Confidence 6666665 66666655442 122 233 222222111 111 11 34555677 78898663 222
Q ss_pred cCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC--CCCCCCCCCCCCChHHHHHHHHHHH
Q 022892 208 LDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD--PLNAPVDGPTQWPLRNLEELLEELV 269 (290)
Q Consensus 208 ~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t--~dka~~D~~~sl~p~~l~~lv~~ir 269 (290)
.. +..+......||||+|+=+.+- .++ +...-..++++++++.++
T Consensus 212 --------~~-----~e~~~~~~~~GADGvVVGSalv~~i~~----~~~~~~~~~~~~~~~~~~ 258 (263)
T CHL00200 212 --------ST-----SEQIKQIKGWNINGIVIGSACVQILLG----SSPEKGLDQLSEFCKVAK 258 (263)
T ss_pred --------CC-----HHHHHHHHhcCCCEEEECHHHHHHHHh----cChhhHHHHHHHHHHHHH
Confidence 11 4456667788999999998872 111 100112356666766665
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.4 Score=46.39 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCcEEEeecCcccHHHHhh--hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGK--VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~--~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
.+...++.+..+++| ++--..+.+.|.+ .+|++.|++-+.++.+..-.+...+|+|++.+.+++|.+|.+..++.
T Consensus 42 s~~~A~~fAq~~~~~---~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~ivea 118 (351)
T KOG2741|consen 42 SLERAKEFAQRHNIP---NPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEA 118 (351)
T ss_pred cHHHHHHHHHhcCCC---CCccccCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHH
Confidence 466778889999998 4444456677765 69999999999999998888899999999999999999999999998
Q ss_pred HHHcCCCcEEEEee
Q 022892 153 VRLAGNPNVMVCER 166 (290)
Q Consensus 153 i~~~Gn~~i~L~~~ 166 (290)
.+..| +.+++-
T Consensus 119 A~~rg---v~~meg 129 (351)
T KOG2741|consen 119 AEARG---VFFMEG 129 (351)
T ss_pred HHHcC---cEEEee
Confidence 88766 444443
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.50 E-value=1.6 Score=41.18 Aligned_cols=104 Identities=15% Similarity=0.211 Sum_probs=62.9
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
+++.-||||.++- |.+.++++|++..+ +|+|++.-. .||.|+ +.-+.-+.+.+.++++.++|++
T Consensus 71 ~grvpviaG~g~~-~t~eai~lak~a~~----~Gad~il~v--------~PyY~k-~~~~gl~~hf~~ia~a~~lPvi-- 134 (299)
T COG0329 71 GGRVPVIAGVGSN-STAEAIELAKHAEK----LGADGILVV--------PPYYNK-PSQEGLYAHFKAIAEAVDLPVI-- 134 (299)
T ss_pred CCCCcEEEecCCC-cHHHHHHHHHHHHh----cCCCEEEEe--------CCCCcC-CChHHHHHHHHHHHHhcCCCEE--
Confidence 4566699999984 56666666666555 699987653 222222 2213456678888888888865
Q ss_pred ecCcccHHHHhhhcceecccCCccCC--HHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 022892 94 VHETVQCEEVGKVADIIQIPAFLCRQ--TDLLVAAAKTGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 94 ~~d~~~~~~l~~~~d~~kIgs~~~~n--~~lL~~~a~~~~PVilstG~~~tl~e~~~A 149 (290)
+|.||++.-.+ .+++..+++.+.-|.+|-... +++.+...
T Consensus 135 ---------------lYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~g-d~~~~~~~ 176 (299)
T COG0329 135 ---------------LYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSG-DLDRLEEI 176 (299)
T ss_pred ---------------EEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCc-CHHHHHHH
Confidence 35555554432 245555555555666666655 55555543
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=6.9 Score=36.96 Aligned_cols=178 Identities=13% Similarity=0.142 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh----hc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK----VA 107 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~----~~ 107 (290)
.+++++.++++|++.+.+++.- ... -+. .| .++..-...++.++++..+||+----+-...+.+.+ .+
T Consensus 27 n~e~~~avi~AAe~~~~PvIl~-~~~---~~~--~~--~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~Gf 98 (286)
T PRK06801 27 DSHFLRALFAAAKQERSPFIIN-IAE---VHF--KY--ISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGF 98 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEE-eCc---chh--hc--CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCC
Confidence 5789999999999999987653 222 111 12 233455667888889999999886666656666554 47
Q ss_pred ceecccCCccC---CHHHHHH----HHhcCCeEEEeCCCCC--------------CHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 108 DIIQIPAFLCR---QTDLLVA----AAKTGKIINIKKGQFC--------------ASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 108 d~~kIgs~~~~---n~~lL~~----~a~~~~PVilstG~~~--------------tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
+.+++-..... |..+-++ +-..+.+|=..-|.-+ ...+.+.|.+.+...|-+-+.+ --
T Consensus 99 tSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAv-ai 177 (286)
T PRK06801 99 SSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAV-AI 177 (286)
T ss_pred cEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEe-cc
Confidence 77777555553 4443333 3345666622222211 1223355556666678776666 55
Q ss_pred cCCCC-CCC-CCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 167 GTMFG-YND-LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 167 gs~~~-y~~-~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
|+..+ |+. ..+|+..+..+++ .++|++. |+- |+. + ..-...++.+|++++=|
T Consensus 178 Gt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVl---HGG-----------Sgi--~-----~e~~~~~i~~Gi~KINv 232 (286)
T PRK06801 178 GNAHGKYKGEPKLDFARLAAIHQQTGLPLVL---HGG-----------SGI--S-----DADFRRAIELGIHKINF 232 (286)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHhcCCCEEE---ECC-----------CCC--C-----HHHHHHHHHcCCcEEEe
Confidence 55433 543 2478888888887 7899877 651 111 1 34456779999986533
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.98 Score=40.29 Aligned_cols=100 Identities=17% Similarity=0.064 Sum_probs=66.5
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEEeecCcccHHHHhh-hcceecccCC---
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVTDVHETVQCEEVGK-VADIIQIPAF--- 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s~~~d~~~~~~l~~-~~d~~kIgs~--- 115 (290)
+.+.++|+++|...... +..|. .+.+..+.+.+++.| ++++..+.+++.+..+.+ .+|++.+...
T Consensus 86 ~~a~~aGad~I~~~~~~---~~~p~-------~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t 155 (219)
T cd04729 86 DALAAAGADIIALDATD---RPRPD-------GETLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYT 155 (219)
T ss_pred HHHHHcCCCEEEEeCCC---CCCCC-------CcCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCcccc
Confidence 44555798877654322 11111 123445555555666 999999999988887777 6999876432
Q ss_pred ------ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 116 ------LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 116 ------~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
...+.++++++.+ .+.||+..-|.. +.+++..+.+
T Consensus 156 ~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~-~~~~~~~~l~ 197 (219)
T cd04729 156 EETAKTEDPDFELLKELRKALGIPVIAEGRIN-SPEQAAKALE 197 (219)
T ss_pred ccccCCCCCCHHHHHHHHHhcCCCEEEeCCCC-CHHHHHHHHH
Confidence 1234577777754 589999999988 8988887654
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors | Back alignment and domain information |
|---|
Probab=93.49 E-value=1.2 Score=45.01 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=88.5
Q ss_pred HHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc--CCcEEEeecCcccHHHHhh---hcceeccc
Q 022892 39 IKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY--DIPIVTDVHETVQCEEVGK---VADIIQIP 113 (290)
Q Consensus 39 L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~--Gi~~~s~~~d~~~~~~l~~---~~d~~kIg 113 (290)
-++.+.+.|+|+|...+-.. .+.+..++++.++. .+.+++-+-+++.++-+++ .+|.+-||
T Consensus 179 di~f~~~~~vD~ia~SFV~~--------------~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~DgImIa 244 (480)
T cd00288 179 DLRFGVEQGVDMIFASFVRK--------------ASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVA 244 (480)
T ss_pred HHHHHHHcCCCEEEECCCCC--------------HHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEEC
Confidence 44566778999887653321 47788899998765 4778998888888877766 59999999
Q ss_pred CCcc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 114 AFLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 114 s~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
-+|+ -+..+++.+-+.||||++.|-|- .|-.|+-..+..+. .|.+-++|-.-+..-.||-
T Consensus 245 rgDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~-dG~D~vmLS~ETa~G~yPv 323 (480)
T cd00288 245 RGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVL-DGTDCVMLSGETAKGKYPV 323 (480)
T ss_pred cchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHH-hCCcEEEEechhcCCCCHH
Confidence 9988 23345566777899999987663 35566666666665 4676677755444323775
Q ss_pred CCCCchhHHHHH
Q 022892 175 LIVDPRNLEWMR 186 (290)
Q Consensus 175 ~~~dL~~i~~lk 186 (290)
.++.+|.
T Consensus 324 -----eaV~~m~ 330 (480)
T cd00288 324 -----EAVKAMA 330 (480)
T ss_pred -----HHHHHHH
Confidence 3555553
|
Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=93.43 E-value=6.7 Score=36.58 Aligned_cols=204 Identities=15% Similarity=0.139 Sum_probs=119.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCCh--hHHHHH-HHHHHHhcCCcEEEeecCcccHH--H
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGM--VEGLKI-LEKVKIAYDIPIVTDVHETVQCE--E 102 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~--~~~l~~-L~~~~~~~Gi~~~s~~~d~~~~~--~ 102 (290)
+.+..++.|++=.+.-++.|+|+|+.+.|...|.. +..+. ...+.. ..++.++.++|+-..++.-.... .
T Consensus 22 ~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~-----~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~ 96 (257)
T TIGR00259 22 NLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFL-----KEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALA 96 (257)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCc-----CCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHH
Confidence 56788898888888888899999999877643421 12221 233443 34666889899888776533332 2
Q ss_pred Hh-h-hcceeccc----CCcc-------CCHHHHHHHHhcCCe------EEEeCCCC---CCHHHHHHHHHHHHHcC-CC
Q 022892 103 VG-K-VADIIQIP----AFLC-------RQTDLLVAAAKTGKI------INIKKGQF---CASSVMVNSAEKVRLAG-NP 159 (290)
Q Consensus 103 l~-~-~~d~~kIg----s~~~-------~n~~lL~~~a~~~~P------VilstG~~---~tl~e~~~Ave~i~~~G-n~ 159 (290)
++ . ..+|+.+- +.-. +=.+++|+=.+++.+ |..|.+.. -+++|...... ..| .+
T Consensus 97 iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~---~~~~aD 173 (257)
T TIGR00259 97 IAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTV---ERGLAD 173 (257)
T ss_pred HHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHH---HhcCCC
Confidence 22 2 58888773 3211 223566655555543 44565553 25555444332 233 33
Q ss_pred cEEEEeecCCCCCCCCCCCchhHHHHHh--cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 160 NVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 160 ~i~L~~~gs~~~y~~~~~dL~~i~~lk~--~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
-+++ .|...+.+ .|..-+...|+ .+.||.+ .+--. +.-...+... ++|+
T Consensus 174 aviv--tG~~TG~~---~d~~~l~~vr~~~~~~Pvll-ggGvt----------------------~eNv~e~l~~-adGv 224 (257)
T TIGR00259 174 AVIL--SGKTTGTE---VDLELLKLAKETVKDTPVLA-GSGVN----------------------LENVEELLSI-ADGV 224 (257)
T ss_pred EEEE--CcCCCCCC---CCHHHHHHHHhccCCCeEEE-ECCCC----------------------HHHHHHHHhh-CCEE
Confidence 3444 55443333 36677777776 4689987 33221 2222233333 9999
Q ss_pred EEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 238 FMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 238 ~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
++=++|--+- +...-.+++-+++|++.++++
T Consensus 225 iVgS~~K~~G---~~~n~~D~~rV~~Fm~~v~~~ 255 (257)
T TIGR00259 225 IVATTIKKDG---VFNNFVDQARVSQFVEKVAHG 255 (257)
T ss_pred EECCCcccCC---ccCCCcCHHHHHHHHHHHHHh
Confidence 9999984222 122348899999999998875
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK09206 pyruvate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.3 Score=44.69 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=86.5
Q ss_pred HHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC---CcEEEeecCcccHHHHhh---hcceec
Q 022892 38 HIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD---IPIVTDVHETVQCEEVGK---VADIIQ 111 (290)
Q Consensus 38 ~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G---i~~~s~~~d~~~~~~l~~---~~d~~k 111 (290)
+-++.+.+.|+|+|...+-.. .+.+..++++..+.| +.+++-+-.++.++-+.+ .+|.+-
T Consensus 176 ~di~f~~~~~vD~ia~SFVr~--------------~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~DgIm 241 (470)
T PRK09206 176 QDLIFGCEQGVDFVAASFIRK--------------RSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDGIM 241 (470)
T ss_pred HHHHHHHHcCCCEEEEcCCCC--------------HHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCEEE
Confidence 334556678999887653321 467888899998764 789999988888877766 599999
Q ss_pred ccCCcc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 112 IPAFLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 112 Igs~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
||-+|+ .|..+++.+-+.|||||+-|-|- .|-.|+-..+..+. .|.+-++|-.-+..-.|
T Consensus 242 VaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~-dG~DavMLS~ETA~G~y 320 (470)
T PRK09206 242 VARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAIL-DGTDAVMLSGESAKGKY 320 (470)
T ss_pred ECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhh-hCCcEEEEechhcCCCC
Confidence 999988 34456677788999999988763 35567777666665 46666777444443237
Q ss_pred CC
Q 022892 173 ND 174 (290)
Q Consensus 173 ~~ 174 (290)
|.
T Consensus 321 Pv 322 (470)
T PRK09206 321 PL 322 (470)
T ss_pred HH
Confidence 75
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.62 Score=46.58 Aligned_cols=117 Identities=10% Similarity=0.106 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcCCCEEeccc--cccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe---ecCcccHHHHhhhc
Q 022892 33 MRMAKHIKSISTKVGLPLVFKSS--FDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD---VHETVQCEEVGKVA 107 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V~~~~--~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~---~~d~~~~~~l~~~~ 107 (290)
++.++..++ +|||+|+... |. -|.....| . .+.+++..++|++.|+.+..+ ......++.+.+.+
T Consensus 13 ~e~l~aAi~----~GADaVY~G~~~~~--~R~~~~~f---~-~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l 82 (443)
T PRK15452 13 LKNMRYAFA----YGADAVYAGQPRYS--LRVRNNEF---N-HENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDL 82 (443)
T ss_pred HHHHHHHHH----CCCCEEEECCCccc--hhhhccCC---C-HHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHH
Confidence 455555554 6999999853 33 23222223 2 467889999999999998776 34444555554432
Q ss_pred c---eecccCCccCCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 022892 108 D---IIQIPAFLCRQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVM 162 (290)
Q Consensus 108 d---~~kIgs~~~~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~ 162 (290)
+ -+.+-+.-++|+-+++.+.+. +.||++++.+..+=. .+++++...|-..++
T Consensus 83 ~~l~~~gvDgvIV~d~G~l~~~ke~~p~l~ih~stqlni~N~---~a~~f~~~lG~~rvv 139 (443)
T PRK15452 83 EPVIAMKPDALIMSDPGLIMMVREHFPEMPIHLSVQANAVNW---ATVKFWQQMGLTRVI 139 (443)
T ss_pred HHHHhCCCCEEEEcCHHHHHHHHHhCCCCeEEEEecccCCCH---HHHHHHHHCCCcEEE
Confidence 2 223455566888888887764 789999998863222 233444444544433
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.8 Score=41.51 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=101.0
Q ss_pred CchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHH
Q 022892 2 DPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEK 81 (290)
Q Consensus 2 ~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~ 81 (290)
|.||.+. .+...-| ++|+-.- -.+=++|.+++++.|...+..- |+ .+++..+.++
T Consensus 23 dlst~~~-~~~l~~P-~~inAM~--------t~in~~LA~~a~~~G~~~i~hK-~~--------------~E~~~sfvrk 77 (321)
T TIGR01306 23 DTSVTLG-KHKFKLP-VVPANMQ--------TIIDEKLAEQLAENGYFYIMHR-FD--------------EESRIPFIKD 77 (321)
T ss_pred eeeEEEC-CcEecCc-EEeeccc--------hhhhHHHHHHHHHcCCEEEEec-CC--------------HHHHHHHHHh
Confidence 5566665 3334555 4554432 1444555566666786655432 22 2344444444
Q ss_pred HHHhcCCcEEEeec----CcccHHHHhh-h--cceecccCCccCCHH---HHHHHHh-cCCeEEEeCCCCCCHHHHHHHH
Q 022892 82 VKIAYDIPIVTDVH----ETVQCEEVGK-V--ADIIQIPAFLCRQTD---LLVAAAK-TGKIINIKKGQFCASSVMVNSA 150 (290)
Q Consensus 82 ~~~~~Gi~~~s~~~----d~~~~~~l~~-~--~d~~kIgs~~~~n~~---lL~~~a~-~~~PVilstG~~~tl~e~~~Av 150 (290)
. +..++.+...+- |.+-+..+.+ . +|++.|-+..=.+.. .++.+.+ .+.|.+++-+.. |.+..+...
T Consensus 78 ~-k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~-t~e~a~~l~ 155 (321)
T TIGR01306 78 M-QERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVG-TPEAVRELE 155 (321)
T ss_pred c-cccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCC-CHHHHHHHH
Confidence 4 344555544432 2233333333 3 466666665444443 4555544 467888888786 888777654
Q ss_pred HHHHHcCCCcEEEE-eecCC--------CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcc
Q 022892 151 EKVRLAGNPNVMVC-ERGTM--------FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 220 (290)
Q Consensus 151 e~i~~~Gn~~i~L~-~~gs~--------~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~ 220 (290)
..|-.-|.+- +.|+. .+++. -.+.++...++ .++||+.|.-=. + |
T Consensus 156 ----~aGad~I~V~~G~G~~~~tr~~~g~g~~~--~~l~ai~ev~~a~~~pVIadGGIr---------------~-~--- 210 (321)
T TIGR01306 156 ----NAGADATKVGIGPGKVCITKIKTGFGTGG--WQLAALRWCAKAARKPIIADGGIR---------------T-H--- 210 (321)
T ss_pred ----HcCcCEEEECCCCCccccceeeeccCCCc--hHHHHHHHHHHhcCCeEEEECCcC---------------c-H---
Confidence 4566544433 22221 11221 13467777777 789998863321 1 2
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeC
Q 022892 221 LIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 221 ~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..+++ |+++||+++|+=.=|
T Consensus 211 --~Di~K-ALa~GAd~Vmig~~~ 230 (321)
T TIGR01306 211 --GDIAK-SIRFGASMVMIGSLF 230 (321)
T ss_pred --HHHHH-HHHcCCCEEeechhh
Confidence 34554 688999999987655
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.27 E-value=9.5 Score=37.87 Aligned_cols=118 Identities=15% Similarity=0.066 Sum_probs=72.2
Q ss_pred cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-----------------CCCCCCCCchhHHHHHh-c--
Q 022892 129 TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-----------------GYNDLIVDPRNLEWMRE-A-- 188 (290)
Q Consensus 129 ~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-----------------~y~~~~~dL~~i~~lk~-~-- 188 (290)
..+||++|=+...+.+++...++.+.+.|-+-|++..+.... +.+-...-++.+..+++ .
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 368999999998888899999998888888888887643210 11111223555666655 4
Q ss_pred CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCC-ChHHHHHHHHH
Q 022892 189 NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQW-PLRNLEELLEE 267 (290)
Q Consensus 189 ~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl-~p~~l~~lv~~ 267 (290)
.+||+.+.- -..| .-+...+.+||+ .+...- ++ .. .|.-++++.+.
T Consensus 341 ~ipIIgvGG----------------I~sg------~Da~e~i~AGAs--~VQv~T----a~-----~~~Gp~~i~~I~~e 387 (409)
T PLN02826 341 KIPLVGCGG----------------VSSG------EDAYKKIRAGAS--LVQLYT----AF-----AYEGPALIPRIKAE 387 (409)
T ss_pred CCcEEEECC----------------CCCH------HHHHHHHHhCCC--eeeecH----HH-----HhcCHHHHHHHHHH
Confidence 588876311 1112 234566889998 444431 11 11 36677777777
Q ss_pred HHHHHHHhCCcc
Q 022892 268 LVAIAKVSKGKQ 279 (290)
Q Consensus 268 ir~~~~~lg~~~ 279 (290)
+.+.-...|-++
T Consensus 388 L~~~l~~~G~~s 399 (409)
T PLN02826 388 LAACLERDGFKS 399 (409)
T ss_pred HHHHHHHcCCCC
Confidence 776544445433
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=93.25 E-value=2 Score=38.47 Aligned_cols=177 Identities=17% Similarity=0.129 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHH-Hh--
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEE-VG-- 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~-l~-- 104 (290)
+.+...++++.|.++ |++.|=-.. |..++. -.+.++.+.+.....-+..++. .....++. +.
T Consensus 12 ~~~~k~~i~~~L~~~----Gv~~iEvg~----~~~~~~------~~~~v~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 12 STEEKLEIAKALDEA----GVDYIEVGF----PFASED------DFEQVRRLREALPNARLQALCR-ANEEDIERAVEAA 76 (237)
T ss_dssp -HHHHHHHHHHHHHH----TTSEEEEEH----CTSSHH------HHHHHHHHHHHHHSSEEEEEEE-SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh----CCCEEEEcc----cccCHH------HHHHhhhhhhhhcccccceeee-ehHHHHHHHHHhh
Confidence 567788888888885 998875541 111110 1233444444444422222222 23333444 22
Q ss_pred --hhcceecccCCccC-------------CH----HHHHHHHhcCCeEEEeCCC--CCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 105 --KVADIIQIPAFLCR-------------QT----DLLVAAAKTGKIINIKKGQ--FCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 105 --~~~d~~kIgs~~~~-------------n~----~lL~~~a~~~~PVilstG~--~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
..++.+.+...... .. ..++.+-..+..|-+..-. ..+++++.+.++.+...|-+.|.|
T Consensus 77 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l 156 (237)
T PF00682_consen 77 KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYL 156 (237)
T ss_dssp HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEE
T ss_pred HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEe
Confidence 13454444322111 02 2334444567777766433 338999999999999889888888
Q ss_pred EeecCCCCCCCCCCCchhHHHHHh-cC-CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 164 CERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 164 ~~~gs~~~y~~~~~dL~~i~~lk~-~~-~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
+...+.. .|. .+. .-+..+++ ++ +|+++ +.|-. ..+...-+.+|+.+||+ .|+.
T Consensus 157 ~Dt~G~~-~P~-~v~-~lv~~~~~~~~~~~l~~-H~Hnd------------------~Gla~An~laA~~aGa~--~id~ 212 (237)
T PF00682_consen 157 ADTVGIM-TPE-DVA-ELVRALREALPDIPLGF-HAHND------------------LGLAVANALAALEAGAD--RIDG 212 (237)
T ss_dssp EETTS-S--HH-HHH-HHHHHHHHHSTTSEEEE-EEBBT------------------TS-HHHHHHHHHHTT-S--EEEE
T ss_pred eCccCCc-CHH-HHH-HHHHHHHHhccCCeEEE-EecCC------------------ccchhHHHHHHHHcCCC--EEEc
Confidence 7765531 222 122 45666777 65 89999 77753 22335567789999998 6665
Q ss_pred eC
Q 022892 242 HD 243 (290)
Q Consensus 242 H~ 243 (290)
-+
T Consensus 213 t~ 214 (237)
T PF00682_consen 213 TL 214 (237)
T ss_dssp BG
T ss_pred cC
Confidence 44
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.24 E-value=6.2 Score=35.67 Aligned_cols=180 Identities=18% Similarity=0.177 Sum_probs=108.2
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
..++|+|..+..+.+....++. ++.+-+.|+.+|-+ -+| ... .. ...+.-+.+++.|+++|++|+--
T Consensus 5 ~~~lylvt~~~~~~~~~~~~~~----ve~al~~Gv~~vQl--R~K-~~~----~~--~~~~~a~~~~~lc~~~~v~liIN 71 (211)
T COG0352 5 LLRLYLVTDRPLIYDGVDLLEW----VEAALKGGVTAVQL--REK-DLS----DE--EYLALAEKLRALCQKYGVPLIIN 71 (211)
T ss_pred ccceEEEcCCccccccchhHHH----HHHHHhCCCeEEEE--ecC-CCC----hH--HHHHHHHHHHHHHHHhCCeEEec
Confidence 4578999877765333221333 34444568776533 222 000 00 00244567999999999999873
Q ss_pred ecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 94 VHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 94 ~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
+.++...+ .+|-+-+|..++..... +++-.-++.|.+|+. +++|.+.|.+ .|-+.+.+-+. |+.
T Consensus 72 ----d~~dlA~~~~AdGVHlGq~D~~~~~a-r~~~~~~~iIG~S~h---~~eea~~A~~----~g~DYv~~Gpi---fpT 136 (211)
T COG0352 72 ----DRVDLALAVGADGVHLGQDDMPLAEA-RELLGPGLIIGLSTH---DLEEALEAEE----LGADYVGLGPI---FPT 136 (211)
T ss_pred ----CcHHHHHhCCCCEEEcCCcccchHHH-HHhcCCCCEEEeecC---CHHHHHHHHh----cCCCEEEECCc---CCC
Confidence 23455555 69999999998877654 445455778888887 7999998754 45455555333 222
Q ss_pred CC----CCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 173 ND----LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 173 ~~----~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+. .-.-+..+.++++ ..+|++. + +|.. +.-+......||+|+-+=+-++
T Consensus 137 ~tK~~~~~~G~~~l~~~~~~~~iP~vA-----I---------------GGi~---~~nv~~v~~~Ga~gVAvvsai~ 190 (211)
T COG0352 137 STKPDAPPLGLEGLREIRELVNIPVVA-----I---------------GGIN---LENVPEVLEAGADGVAVVSAIT 190 (211)
T ss_pred CCCCCCCccCHHHHHHHHHhCCCCEEE-----E---------------cCCC---HHHHHHHHHhCCCeEEehhHhh
Confidence 11 2244556666666 4589754 1 2310 3445566788999986655553
|
|
| >COG0148 Eno Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.16 E-value=1.2 Score=43.97 Aligned_cols=95 Identities=18% Similarity=0.162 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhc----ceecccCCcc--CCHHHHHHHHhcCC--eEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVA----DIIQIPAFLC--RQTDLLVAAAKTGK--IINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~----d~~kIgs~~~--~n~~lL~~~a~~~~--PVilstG~~~tl~ 144 (290)
.+.+.++.++++++.|..+-++|++.+-+-..... +-+||=..++ ||+..|+..-..+. -|++|-.+-+|+.
T Consensus 263 ~e~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~~g~kvqivGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLT 342 (423)
T COG0148 263 EELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLT 342 (423)
T ss_pred HHHHHHHHHHHHhCCEEEEcCCCCchhHHHHHHHHHhhCCeEEEECCcceecCHHHHHHHHHhccCceEEEechhcccHH
Confidence 57899999999999999899999999888766642 3346666665 89999988655444 7999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecC
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
|..+|++..+..|- ..++-||..
T Consensus 343 Et~~ai~~A~~~gy-~~viSHRSG 365 (423)
T COG0148 343 ETLEAINLAKDAGY-TAVISHRSG 365 (423)
T ss_pred HHHHHHHHHHHCCC-eEEEecCCC
Confidence 99999999988764 578899965
|
|
| >PTZ00300 pyruvate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=1.6 Score=43.85 Aligned_cols=120 Identities=17% Similarity=0.153 Sum_probs=83.6
Q ss_pred HHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC--CcEEEeecCcccHHHHhh---hcceecccC
Q 022892 40 KSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD--IPIVTDVHETVQCEEVGK---VADIIQIPA 114 (290)
Q Consensus 40 ~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G--i~~~s~~~d~~~~~~l~~---~~d~~kIgs 114 (290)
++.+-+.|+|.|....-.. .+..+.+++++.+.| +.+++-+-.++.++-+.+ .+|.+-||-
T Consensus 153 I~~ald~gvd~I~~SfVrs--------------aeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaR 218 (454)
T PTZ00300 153 LQFGVEQGVDMIFASFIRS--------------AEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVAR 218 (454)
T ss_pred HHHHHHCCCCEEEECCCCC--------------HHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEec
Confidence 3445567999887643321 467888888886654 678998988888777766 599999999
Q ss_pred Ccc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 115 FLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 115 ~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
+|+ .|..+++.+-+.|||||+.|-|- .|-.|+-..+..+. .|-+-++|-.-+..-.||.
T Consensus 219 GDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~-dG~DavMLS~ETA~G~yP~ 296 (454)
T PTZ00300 219 GDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVF-NGADCVMLSGETAKGKYPN 296 (454)
T ss_pred chhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHH-hCCcEEEEechhcCCCCHH
Confidence 987 34455666778899999988773 24466666666555 4666677755444323775
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=93.12 E-value=5.3 Score=34.52 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=87.2
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecC
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE 96 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d 96 (290)
+|+|..+-.. ....++...++.+ .|++.|-.-..+ .+. ..+.+..+.+.+.|++.+++++-.-
T Consensus 1 ly~It~~~~~--~~~~~~~l~~~~~----~gv~~v~lR~k~----~~~-----~~~~~~a~~l~~~~~~~~~~liin~-- 63 (180)
T PF02581_consen 1 LYLITDPRLC--GDDFLEQLEAALA----AGVDLVQLREKD----LSD-----EELLELARRLAELCQKYGVPLIIND-- 63 (180)
T ss_dssp EEEEE-STTS--TCHHHHHHHHHHH----TT-SEEEEE-SS----S-H-----HHHHHHHHHHHHHHHHTTGCEEEES--
T ss_pred CEEEeCCchh--cchHHHHHHHHHH----CCCcEEEEcCCC----CCc-----cHHHHHHHHHHHHhhcceEEEEecC--
Confidence 4778777663 2335566666655 487765332111 000 0124667789999999999988754
Q ss_pred cccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC---CCCC
Q 022892 97 TVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT---MFGY 172 (290)
Q Consensus 97 ~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs---~~~y 172 (290)
..+...+ .+|-+-++..++.-... +..-..++.|..|.. +.+|+..|. +.|-+.+.+-+.=- .+++
T Consensus 64 --~~~la~~~~~dGvHl~~~~~~~~~~-r~~~~~~~~ig~S~h---~~~e~~~a~----~~g~dYv~~gpvf~T~sk~~~ 133 (180)
T PF02581_consen 64 --RVDLALELGADGVHLGQSDLPPAEA-RKLLGPDKIIGASCH---SLEEAREAE----ELGADYVFLGPVFPTSSKPGA 133 (180)
T ss_dssp ---HHHHHHCT-SEEEEBTTSSSHHHH-HHHHTTTSEEEEEES---SHHHHHHHH----HCTTSEEEEETSS--SSSSS-
T ss_pred --CHHHHHhcCCCEEEecccccchHHh-hhhcccceEEEeecC---cHHHHHHhh----hcCCCEEEECCccCCCCCccc
Confidence 4455555 58999999988754433 433344666666655 889877654 46677777665411 1223
Q ss_pred CCCCCCchhHHHHHh-cCCCEEE
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVA 194 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~ 194 (290)
..+.+..+..+++ +.+||..
T Consensus 134 --~~~g~~~l~~~~~~~~~pv~A 154 (180)
T PF02581_consen 134 --PPLGLDGLREIARASPIPVYA 154 (180)
T ss_dssp --TTCHHHHHHHHHHHTSSCEEE
T ss_pred --cccCHHHHHHHHHhCCCCEEE
Confidence 2345666677776 7899865
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.1 Score=41.53 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=71.4
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee----------cCccc----HHHHhh-hc
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV----------HETVQ----CEEVGK-VA 107 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~----------~d~~~----~~~l~~-~~ 107 (290)
+.+.|+++|....+.+ +.. +. ...+.+..+.+.|++.|+|++.-. ++++. +....+ .+
T Consensus 102 A~~~Gad~v~~~~~~g-~~~----~~--~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GA 174 (267)
T PRK07226 102 AIKLGADAVSVHVNVG-SET----EA--EMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGA 174 (267)
T ss_pred HHHcCCCEEEEEEecC-Chh----HH--HHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCC
Confidence 3446999887776553 100 10 024567778899999999998742 22222 233334 59
Q ss_pred ceecccCCccCCHHHHHHHHh-cCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAK-TGKIINIKKGQFC-ASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~-~~~PVilstG~~~-tl~e~~~Ave~i~~~Gn~ 159 (290)
|++|.+.. ....+++++.+ .+.||..+=|... |.++.+.-++.+...|..
T Consensus 175 D~vKt~~~--~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~ 226 (267)
T PRK07226 175 DIVKTNYT--GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAA 226 (267)
T ss_pred CEEeeCCC--CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 99999732 35677877764 5899999999874 677777777667777865
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.94 Score=44.24 Aligned_cols=110 Identities=10% Similarity=0.028 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-eecCcccHHHHhh-hc
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-DVHETVQCEEVGK-VA 107 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-~~~d~~~~~~l~~-~~ 107 (290)
....++++.|++ +|+++|... .||....|.+. ...+..+.+.+++.+++++. .+++.+.+..+.+ .+
T Consensus 141 ~~~~e~a~~l~e----aGvd~I~vh-----grt~~~~h~~~--~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGA 209 (368)
T PRK08649 141 QRAQELAPTVVE----AGVDLFVIQ-----GTVVSAEHVSK--EGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGA 209 (368)
T ss_pred cCHHHHHHHHHH----CCCCEEEEe-----ccchhhhccCC--cCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCC
Confidence 345677777766 699988764 34433323211 11255678888889999998 9999998888877 79
Q ss_pred ceecccCCc--------cC--CHHHH---HHHHh-----------cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 108 DIIQIPAFL--------CR--QTDLL---VAAAK-----------TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 108 d~~kIgs~~--------~~--n~~lL---~~~a~-----------~~~PVilstG~~~tl~e~~~Ave 151 (290)
|.++||-.. .. -.|++ ..++. .+.|||-.=|.. +..++..|+.
T Consensus 210 D~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~-~~~diakAla 276 (368)
T PRK08649 210 AGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIG-TSGDIAKAIA 276 (368)
T ss_pred CEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCC-CHHHHHHHHH
Confidence 999998332 11 13443 23221 158999999998 9999988864
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=93.05 E-value=5.4 Score=34.51 Aligned_cols=178 Identities=17% Similarity=0.149 Sum_probs=97.4
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH 95 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~ 95 (290)
++|+|..|-.. + ...++..+++.+ .|+++|-. ..| .. ....+.+.+..+...|+++|++++..-
T Consensus 1 ~ly~it~~~~~-~-~~~~~~~~~~~~----~g~~~v~l--R~~-~~------~~~~~~~~~~~l~~~~~~~~~~l~i~~- 64 (196)
T TIGR00693 1 GLYLITDPQDG-P-ADLLNRVEAALK----GGVTLVQL--RDK-GS------NTRERLALAEKLQELCRRYGVPFIVND- 64 (196)
T ss_pred CEEEEECCccc-c-ccHHHHHHHHHh----cCCCEEEE--ecC-CC------CHHHHHHHHHHHHHHHHHhCCeEEEEC-
Confidence 36778776431 1 123344444433 58887622 221 00 000113456778999999999998853
Q ss_pred CcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE---eecCCCC
Q 022892 96 ETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC---ERGTMFG 171 (290)
Q Consensus 96 d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~---~~gs~~~ 171 (290)
.++.+.+ .++-+-++..++.-.. ++..-..++.|.++. . +.+|...|.+ .|-+.+.+- +.++..+
T Consensus 65 ---~~~la~~~g~~GvHl~~~~~~~~~-~r~~~~~~~~ig~s~--h-~~~e~~~a~~----~g~dyi~~~~v~~t~~k~~ 133 (196)
T TIGR00693 65 ---RVDLALALGADGVHLGQDDLPASE-ARALLGPDKIIGVST--H-NLEELAEAEA----EGADYIGFGPIFPTPTKKD 133 (196)
T ss_pred ---HHHHHHHcCCCEEecCcccCCHHH-HHHhcCCCCEEEEeC--C-CHHHHHHHhH----cCCCEEEECCccCCCCCCC
Confidence 3555555 5777778776654322 233333345555554 4 8888776554 455544442 2222111
Q ss_pred CCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 172 YNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+. ...++..+..+++ + ++||..= +|.. +.-...+...|++|+.+-.-++
T Consensus 134 ~~-~~~g~~~l~~~~~~~~~~pv~a~--------------------GGI~---~~~~~~~~~~G~~gva~~~~i~ 184 (196)
T TIGR00693 134 PA-PPAGVELLREIAATSIDIPIVAI--------------------GGIT---LENAAEVLAAGADGVAVVSAIM 184 (196)
T ss_pred CC-CCCCHHHHHHHHHhcCCCCEEEE--------------------CCcC---HHHHHHHHHcCCCEEEEhHHhh
Confidence 10 1235667777765 4 5888661 1311 2334455688999999887775
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PLN02762 pyruvate kinase complex alpha subunit | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.5 Score=44.65 Aligned_cols=121 Identities=13% Similarity=0.116 Sum_probs=87.1
Q ss_pred HHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC----CcEEEeecCcccHHHHhh---hcceec
Q 022892 39 IKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD----IPIVTDVHETVQCEEVGK---VADIIQ 111 (290)
Q Consensus 39 L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G----i~~~s~~~d~~~~~~l~~---~~d~~k 111 (290)
-++.+.+.|+|+|...+-.. .+.+..+++++.+.| +++++-+-.++.++-+.+ ..|-+-
T Consensus 208 di~f~~~~~vD~ia~SFVr~--------------a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~sDgiM 273 (509)
T PLN02762 208 DIDFGISEGVDFIAVSFVKS--------------AEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNLEEIIRASDGAM 273 (509)
T ss_pred HHHHHHHcCCCEEEECCCCC--------------HHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHHHHHHHhcCEEE
Confidence 34566678999987753321 477999999998875 689999998888887776 599999
Q ss_pred ccCCcc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 112 IPAFLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 112 Igs~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
|+=+|+ -|-.+++.+-..+||||+.|-|- .|-.|+-..+..+. .|.+-++|---+..-.|
T Consensus 274 VARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVl-DGtDavMLSgETA~G~y 352 (509)
T PLN02762 274 VARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVR-QRADALMLSGESAMGLY 352 (509)
T ss_pred EecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHH-hCCCEEEEcchhcCCCC
Confidence 999987 34456677778999999988773 24466666666665 57766666444433237
Q ss_pred CC
Q 022892 173 ND 174 (290)
Q Consensus 173 ~~ 174 (290)
|-
T Consensus 353 Pv 354 (509)
T PLN02762 353 PE 354 (509)
T ss_pred HH
Confidence 75
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=93.04 E-value=7.5 Score=36.23 Aligned_cols=179 Identities=17% Similarity=0.240 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCccc-------------CCCCChhHHHHHHHHHH-HhcCCcEEE-
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKS-------------FRGPGMVEGLKILEKVK-IAYDIPIVT- 92 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~-------------~~g~~~~~~l~~L~~~~-~~~Gi~~~s- 92 (290)
|.+..++.++.|.+ .|+|++=.+. |-+.|.. -.|..+.+.+++++++. +...+|++-
T Consensus 22 ~~~~~~~~~~~l~~----~GaD~iEiGi----PfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm 93 (259)
T PF00290_consen 22 DLETTLEILKALEE----AGADIIEIGI----PFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLM 93 (259)
T ss_dssp SHHHHHHHHHHHHH----TTBSSEEEE------SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEE
T ss_pred CHHHHHHHHHHHHH----cCCCEEEECC----CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEE
Confidence 56777888877777 6999987664 3343431 12444456788889998 778888755
Q ss_pred eecCcc---cH----HHHhh-hcceecccCCccCC-HHHHHHHHhcCC-eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 022892 93 DVHETV---QC----EEVGK-VADIIQIPAFLCRQ-TDLLVAAAKTGK-IINIKKGQFCASSVMVNSAEKVRLAGNPNVM 162 (290)
Q Consensus 93 ~~~d~~---~~----~~l~~-~~d~~kIgs~~~~n-~~lL~~~a~~~~-PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~ 162 (290)
+-+++- .+ +.+.+ .+|-+-|+---... .++...+.+.|. +|.|=+..+ +.+.+...++ .+..-|-
T Consensus 94 ~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t-~~~Ri~~i~~----~a~gFiY 168 (259)
T PF00290_consen 94 TYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTT-PEERIKKIAK----QASGFIY 168 (259)
T ss_dssp E-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS--HHHHHHHHH----H-SSEEE
T ss_pred eeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHH----hCCcEEE
Confidence 443331 12 22333 47777777655533 355555666777 455555545 5555555443 2222233
Q ss_pred EEeecCCCCCCCCCCC---chhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 163 VCERGTMFGYNDLIVD---PRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 163 L~~~gs~~~y~~~~~d---L~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
++-+-...+... .++ -..+..+|+ +++||.+- -++ .. +..+.. +..||||+|
T Consensus 169 ~vs~~GvTG~~~-~~~~~l~~~i~~ik~~~~~Pv~vG--FGI---------------~~-----~e~~~~-~~~~aDGvI 224 (259)
T PF00290_consen 169 LVSRMGVTGSRT-ELPDELKEFIKRIKKHTDLPVAVG--FGI---------------ST-----PEQAKK-LAAGADGVI 224 (259)
T ss_dssp EESSSSSSSTTS-SCHHHHHHHHHHHHHTTSS-EEEE--SSS----------------S-----HHHHHH-HHTTSSEEE
T ss_pred eeccCCCCCCcc-cchHHHHHHHHHHHhhcCcceEEe--cCC---------------CC-----HHHHHH-HHccCCEEE
Confidence 322211112222 111 134556677 78897551 111 11 344444 348999999
Q ss_pred EeeeC
Q 022892 239 MEVHD 243 (290)
Q Consensus 239 IEkH~ 243 (290)
|=+.+
T Consensus 225 VGSa~ 229 (259)
T PF00290_consen 225 VGSAF 229 (259)
T ss_dssp ESHHH
T ss_pred ECHHH
Confidence 98876
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=93.02 E-value=2 Score=39.85 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=89.7
Q ss_pred hhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH
Q 022892 5 TALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI 84 (290)
Q Consensus 5 ~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~ 84 (290)
.+++..|.. .++.++---..+.|-+.+..+|+--.++ .|-+.||..-... +++ +.....++-+.|+
T Consensus 52 ~~~~~~i~~-~~~~~lpNTaG~~ta~eAv~~a~lare~---~~~~~iKlEVi~d-~~~---------Llpd~~~tv~aa~ 117 (248)
T cd04728 52 ESFLDLLDK-SGYTLLPNTAGCRTAEEAVRTARLAREA---LGTDWIKLEVIGD-DKT---------LLPDPIETLKAAE 117 (248)
T ss_pred chHHhhccc-cCCEECCCCCCCCCHHHHHHHHHHHHHH---hCCCeEEEEEecC-ccc---------cccCHHHHHHHHH
Confidence 455666643 2333332222244677777777766665 4688998875542 222 1234566666777
Q ss_pred hc---CCcEE-EeecCcccHHHHhh-hcceec-----ccCC-ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 85 AY---DIPIV-TDVHETVQCEEVGK-VADIIQ-----IPAF-LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 85 ~~---Gi~~~-s~~~d~~~~~~l~~-~~d~~k-----Igs~-~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
++ |+.++ -..-|+..+..+++ .++++- |||+ -+.|.++++.+.+ .+.||+.--|.. |++++..|.+
T Consensus 118 ~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~-tpeda~~Ame 195 (248)
T cd04728 118 ILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGIG-TPSDAAQAME 195 (248)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCC-CHHHHHHHHH
Confidence 77 99999 78888888888888 577663 3444 2368899998876 578999999999 9999999877
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.2 Score=39.50 Aligned_cols=106 Identities=20% Similarity=0.149 Sum_probs=64.1
Q ss_pred CCccCCHHHH----HHHH-hcCCeEEEeCCCCCCHH-HHHHHHHHHHHcCCCcEEEEeecCCCC-CCCCCCCchhHHHHH
Q 022892 114 AFLCRQTDLL----VAAA-KTGKIINIKKGQFCASS-VMVNSAEKVRLAGNPNVMVCERGTMFG-YNDLIVDPRNLEWMR 186 (290)
Q Consensus 114 s~~~~n~~lL----~~~a-~~~~PVilstG~~~tl~-e~~~Ave~i~~~Gn~~i~L~~~gs~~~-y~~~~~dL~~i~~lk 186 (290)
+....+..++ +++. ..+.||.+|...+.+.+ ++...++.+...|-.-+ .+|..+... |. ...++..+..++
T Consensus 102 ~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i-~v~~~~~~~~~~-~~~~~~~~~~i~ 179 (231)
T cd02801 102 AALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASAL-TVHGRTREQRYS-GPADWDYIAEIK 179 (231)
T ss_pred ehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEE-EECCCCHHHcCC-CCCCHHHHHHHH
Confidence 3334565444 3432 34579999865543444 88888888887776444 445544211 22 235777888888
Q ss_pred h-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc-CCCEEEEeeeC
Q 022892 187 E-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV-GVDGVFMEVHD 243 (290)
Q Consensus 187 ~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~-GA~G~~IEkH~ 243 (290)
+ .++||+.+.+=. . ..-+..++.. ||+|+++=+-+
T Consensus 180 ~~~~ipvi~~Ggi~-----------------~-----~~d~~~~l~~~gad~V~igr~~ 216 (231)
T cd02801 180 EAVSIPVIANGDIF-----------------S-----LEDALRCLEQTGVDGVMIGRGA 216 (231)
T ss_pred hCCCCeEEEeCCCC-----------------C-----HHHHHHHHHhcCCCEEEEcHHh
Confidence 8 789998843311 1 3334455666 89999987654
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PLN02623 pyruvate kinase | Back alignment and domain information |
|---|
Probab=92.91 E-value=1.7 Score=44.88 Aligned_cols=125 Identities=11% Similarity=0.103 Sum_probs=84.8
Q ss_pred HHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC--CcEEEeecCcccHHHHhh---hcceecccC
Q 022892 40 KSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD--IPIVTDVHETVQCEEVGK---VADIIQIPA 114 (290)
Q Consensus 40 ~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G--i~~~s~~~d~~~~~~l~~---~~d~~kIgs 114 (290)
++.+.+.|+|.|...+-.. .+.+..+++|.++.| +.+++-+-+++.++-+++ .+|.+-||-
T Consensus 284 i~f~~~~~vD~ialSFVr~--------------a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgr 349 (581)
T PLN02623 284 IKFGVENKVDFYAVSFVKD--------------AQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVAR 349 (581)
T ss_pred HHHHHHcCCCEEEECCCCC--------------HHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECc
Confidence 4556667898877643221 467888999987765 678888888888777666 699999999
Q ss_pred Ccc-----------CCHHHHHHHHhcCCeEEEeC---------CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCC
Q 022892 115 FLC-----------RQTDLLVAAAKTGKIINIKK---------GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYN 173 (290)
Q Consensus 115 ~~~-----------~n~~lL~~~a~~~~PVilst---------G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~ 173 (290)
+|+ -+..+++.+-+.||||++.| +.. |-.|+..+...+. .|-+-++|---. .+ .||
T Consensus 350 gDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~P-TRAEv~Dva~av~-dG~d~vmLs~Et-a~G~yP 426 (581)
T PLN02623 350 GDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTP-TRAEVSDIAIAVR-EGADAVMLSGET-AHGKFP 426 (581)
T ss_pred chhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCC-CchhHHHHHHHHH-cCCCEEEecchh-hcCcCH
Confidence 988 23345566777899999877 444 6677777777665 565444443222 23 377
Q ss_pred CCCCCchhHHHHH
Q 022892 174 DLIVDPRNLEWMR 186 (290)
Q Consensus 174 ~~~~dL~~i~~lk 186 (290)
. .++.+|+
T Consensus 427 v-----eaV~~m~ 434 (581)
T PLN02623 427 L-----KAVKVMH 434 (581)
T ss_pred H-----HHHHHHH
Confidence 5 4555553
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.88 E-value=7.1 Score=37.79 Aligned_cols=130 Identities=15% Similarity=0.033 Sum_probs=70.6
Q ss_pred HHHHHH-hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCchhHHHHHh----c--CCCEE
Q 022892 122 LLVAAA-KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWMRE----A--NCPVV 193 (290)
Q Consensus 122 lL~~~a-~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i~~lk~----~--~~pV~ 193 (290)
.++.+. .++.||++| |.. +.++.+.++ ..|-+-|++-..|... ..... -..+++.+++ . .+||+
T Consensus 204 ~i~~l~~~~~~PvivK-gv~-~~~dA~~a~----~~G~d~I~vsnhgG~~~d~~~~--~~~~L~~i~~~~~~~~~~~~vi 275 (344)
T cd02922 204 DIKWLRKHTKLPIVLK-GVQ-TVEDAVLAA----EYGVDGIVLSNHGGRQLDTAPA--PIEVLLEIRKHCPEVFDKIEVY 275 (344)
T ss_pred HHHHHHHhcCCcEEEE-cCC-CHHHHHHHH----HcCCCEEEEECCCcccCCCCCC--HHHHHHHHHHHHHHhCCCceEE
Confidence 345543 467899999 554 777776654 4677777776555431 11001 1123333332 1 48898
Q ss_pred EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 022892 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAK 273 (290)
Q Consensus 194 ~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~ 273 (290)
.|..=. .| ..+. .|+++||+++.|-+-|-..-. ..+ ..--..-+..+.++++.+-.
T Consensus 276 ~~GGIr----------------~G-----~Dv~-kalaLGA~aV~iG~~~l~~l~-~~G-~~gv~~~l~~l~~EL~~~m~ 331 (344)
T cd02922 276 VDGGVR----------------RG-----TDVL-KALCLGAKAVGLGRPFLYALS-AYG-EEGVEKAIQILKDEIETTMR 331 (344)
T ss_pred EeCCCC----------------CH-----HHHH-HHHHcCCCEEEECHHHHHHHh-hcc-HHHHHHHHHHHHHHHHHHHH
Confidence 853322 13 3444 579999999988866522110 011 00011145666677777777
Q ss_pred HhCCcccccc
Q 022892 274 VSKGKQRMNI 283 (290)
Q Consensus 274 ~lg~~~~~~~ 283 (290)
.+|.+++-++
T Consensus 332 l~G~~~i~~l 341 (344)
T cd02922 332 LLGVTSLDQL 341 (344)
T ss_pred HhCCCCHHHh
Confidence 7787665443
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=4 Score=39.28 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=79.1
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCC--CEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEE
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGL--PLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVT 92 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~--~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s 92 (290)
.+++=++++. +. ...+.+.+|++ +|+ |+|-...-. +.. ....+.++++++++. ++++.
T Consensus 85 ~l~v~~~vg~--~~-~~~~~~~~Lv~----ag~~~d~i~iD~a~-----------gh~-~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 85 GLIASISVGV--KD-DEYDFVDQLAA----EGLTPEYITIDIAH-----------GHS-DSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred ccEEEEEecC--CH-HHHHHHHHHHh----cCCCCCEEEEECCC-----------Cch-HHHHHHHHHHHhhCCCCeEEE
Confidence 4444444443 33 45677888877 455 988764321 111 344555777777885 99999
Q ss_pred -eecCcccHHHHhh-hcceeccc---CCcc-C-----------CHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 93 -DVHETVQCEEVGK-VADIIQIP---AFLC-R-----------QTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 93 -~~~d~~~~~~l~~-~~d~~kIg---s~~~-~-----------n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
++-+.+.+..+.+ .+|++++| .+.+ + +++.++.+.+ .+.|||-+-|.. +..++..|+.
T Consensus 146 g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~-~~~Di~KaLa 221 (326)
T PRK05458 146 GNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIR-THGDIAKSIR 221 (326)
T ss_pred EecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCC-CHHHHHHHHH
Confidence 8999999999988 79999987 3222 2 2334666554 588999999988 9999988865
|
|
| >PRK06247 pyruvate kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=1.2 Score=44.91 Aligned_cols=126 Identities=16% Similarity=0.199 Sum_probs=87.3
Q ss_pred HHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh---hcceecccCCc
Q 022892 40 KSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK---VADIIQIPAFL 116 (290)
Q Consensus 40 ~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~---~~d~~kIgs~~ 116 (290)
++.+.+.|+|.|...+-.. .+.+..+++++.+ .+.+++-+-+++.++-+.+ .+|.+-||-+|
T Consensus 179 i~f~~~~~vD~ia~SFVr~--------------a~Di~~~r~~l~~-~~~iiaKIEt~eav~nldeI~~~~DgImVaRGD 243 (476)
T PRK06247 179 LEFALELGVDWVALSFVQR--------------PEDVEEVRKIIGG-RVPVMAKIEKPQAIDRLEAIVEASDAIMVARGD 243 (476)
T ss_pred HHHHHHcCCCEEEECCCCC--------------HHHHHHHHHHhhh-cCeEEEEECCHHHHHhHHHHHHHcCEEEEccch
Confidence 4556677888887643221 4778889999865 6889999988888877766 59999999998
Q ss_pred c-----------CCHHHHHHHHhcCCeEEEeCCCCC--------CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC
Q 022892 117 C-----------RQTDLLVAAAKTGKIINIKKGQFC--------ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 117 ~-----------~n~~lL~~~a~~~~PVilstG~~~--------tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~ 177 (290)
+ .+..+++.+-+.+||||+.|-|-- |=.|+-..+..+. .|.+-++|..-+..-.||.
T Consensus 244 Lgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~-dG~DavMLS~ETA~G~yPv--- 319 (476)
T PRK06247 244 LGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVL-DGADAVMLSAETASGKYPV--- 319 (476)
T ss_pred hccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHH-hCCcEEEEcchhcCCCCHH---
Confidence 8 334566667788999999887742 4456666665554 4776677755444323775
Q ss_pred CchhHHHHH
Q 022892 178 DPRNLEWMR 186 (290)
Q Consensus 178 dL~~i~~lk 186 (290)
.++.+|+
T Consensus 320 --eaV~~m~ 326 (476)
T PRK06247 320 --EAVRTMA 326 (476)
T ss_pred --HHHHHHH
Confidence 3555553
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.97 Score=43.69 Aligned_cols=84 Identities=18% Similarity=0.164 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh--hcceecccCCccCCH----HHHHHHHh---------cCCeEEEeC
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK--VADIIQIPAFLCRQT----DLLVAAAK---------TGKIINIKK 137 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~--~~d~~kIgs~~~~n~----~lL~~~a~---------~~~PVilst 137 (290)
.+.|+.|.++|+++|+.++.|+||.++++.+.+ .++++-|-.|++..+ ..-..+.. .+.-++-..
T Consensus 216 ~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsES 295 (338)
T PLN02460 216 DLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGES 295 (338)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECC
Confidence 357999999999999999999999999998776 489999999988322 21122222 122244457
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 138 GQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 138 G~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
|.. |.+++.. +...|-+-+
T Consensus 296 GI~-t~~Dv~~----l~~~GadAv 314 (338)
T PLN02460 296 GLF-TPDDVAY----VQNAGVKAV 314 (338)
T ss_pred CCC-CHHHHHH----HHHCCCCEE
Confidence 887 9998876 445665433
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=92.72 E-value=5.8 Score=37.55 Aligned_cols=166 Identities=17% Similarity=0.168 Sum_probs=93.2
Q ss_pred HHHHHcCCCEEeccccccC---CCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcceecccC
Q 022892 41 SISTKVGLPLVFKSSFDKA---NRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VADIIQIPA 114 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~---~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs 114 (290)
++|+++|+-+||- +++- -|...+ .---.+.+.+++..+...||++. -.-+..+++.|.+ .+|++- .|
T Consensus 24 ~iae~aga~avm~--le~~p~d~r~~gg----v~R~~~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiID-eT 96 (287)
T TIGR00343 24 KIAEEAGAVAVMA--LERVPADIRASGG----VARMSDPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYID-ES 96 (287)
T ss_pred HHHHHcCceEEEe--eccCchhhHhcCC----eeecCCHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEE-cc
Confidence 5778899998885 2211 122111 10014566677777778899887 4444667777777 688883 22
Q ss_pred CccCCH-HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC---------------------
Q 022892 115 FLCRQT-DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY--------------------- 172 (290)
Q Consensus 115 ~~~~n~-~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y--------------------- 172 (290)
.-.+-. ++.... +...-+.|=.|.+ |++|.+++++ .|-.=| +++-++|
T Consensus 97 e~lrPade~~~~~-K~~f~vpfmad~~-~l~EAlrai~----~GadmI----~Tt~e~gTg~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 97 EVLTPADWTFHID-KKKFKVPFVCGAR-DLGEALRRIN----EGAAMI----RTKGEAGTGNIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred CCCCcHHHHHHHH-HHHcCCCEEccCC-CHHHHHHHHH----CCCCEE----eccccCCCccHHHHHHHHHHHHHHHHHH
Confidence 222332 232223 3222455556777 8888888765 222111 1111111
Q ss_pred ------------CC-CCCCchhHHHHHh-cCCCEE-EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 173 ------------ND-LIVDPRNLEWMRE-ANCPVV-ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 173 ------------~~-~~~dL~~i~~lk~-~~~pV~-~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
.. ...++..+..+++ .++||+ | +-=++ .. +.-+..+..+||+|+
T Consensus 167 ~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~f-AiGGI---------------~T-----PedAa~~melGAdGV 225 (287)
T TIGR00343 167 QNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNF-AAGGV---------------AT-----PADAALMMQLGADGV 225 (287)
T ss_pred hcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEe-ccCCC---------------CC-----HHHHHHHHHcCCCEE
Confidence 00 2356777788877 689997 3 11110 01 444556788999999
Q ss_pred EEeeeCC
Q 022892 238 FMEVHDD 244 (290)
Q Consensus 238 ~IEkH~t 244 (290)
++=+-++
T Consensus 226 aVGSaI~ 232 (287)
T TIGR00343 226 FVGSGIF 232 (287)
T ss_pred EEhHHhh
Confidence 9988875
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK09875 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=9.2 Score=36.18 Aligned_cols=77 Identities=21% Similarity=0.163 Sum_probs=52.1
Q ss_pred ee-cccCCc--cCCH--HHHHHHH----hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC--CcEEEEeecCCCCCCCCCC
Q 022892 109 II-QIPAFL--CRQT--DLLVAAA----KTGKIINIKKGQFCASSVMVNSAEKVRLAGN--PNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 109 ~~-kIgs~~--~~n~--~lL~~~a----~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn--~~i~L~~~gs~~~y~~~~~ 177 (290)
++ +||+.. ++.. ..+++++ .+|.||.+-|+.. + +....++.+.+.|- .++++.|+... .
T Consensus 122 vIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~-~--~g~e~l~il~e~Gvd~~rvvi~H~d~~-------~ 191 (292)
T PRK09875 122 IIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFS-T--MGLEQLALLQAHGVDLSRVTVGHCDLK-------D 191 (292)
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCc-c--chHHHHHHHHHcCcCcceEEEeCCCCC-------C
Confidence 45 888765 4433 3445544 5899999988765 3 33334677888886 68999998742 2
Q ss_pred CchhHHHHHhcCCCEEEe
Q 022892 178 DPRNLEWMREANCPVVAD 195 (290)
Q Consensus 178 dL~~i~~lk~~~~pV~~D 195 (290)
|+..+..+-+.|+-|.||
T Consensus 192 d~~~~~~l~~~G~~l~fD 209 (292)
T PRK09875 192 NLDNILKMIDLGAYVQFD 209 (292)
T ss_pred CHHHHHHHHHcCCEEEec
Confidence 555666666688889987
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.69 E-value=3.2 Score=40.63 Aligned_cols=133 Identities=19% Similarity=0.140 Sum_probs=71.6
Q ss_pred HHHHHHhcCCcEEEeecCc----ccHHHHhh-hcceecccCCc---------cCCHHHHHHHHhcCCeEEEeCCCCCCHH
Q 022892 79 LEKVKIAYDIPIVTDVHET----VQCEEVGK-VADIIQIPAFL---------CRQTDLLVAAAKTGKIINIKKGQFCASS 144 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~----~~~~~l~~-~~d~~kIgs~~---------~~n~~lL~~~a~~~~PVilstG~~~tl~ 144 (290)
++++.+ .++.+.... ++ +.++.+.+ .+|++-|-.+. -...++.+.+...+.||+. .+.. |.+
T Consensus 125 i~~vr~-a~VtvkiRl-~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~-t~e 200 (369)
T TIGR01304 125 IAEVRD-SGVITAVRV-SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVN-DYT 200 (369)
T ss_pred HHHHHh-cceEEEEec-CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCC-CHH
Confidence 344433 455555544 22 22334444 58999875332 2344555667778999997 3334 888
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC---chhHHHH--------HhcC---CCEEEeCCCCCCCCCCCccCC
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD---PRNLEWM--------REAN---CPVVADVTHSLQQPAGKKLDG 210 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d---L~~i~~l--------k~~~---~pV~~D~sHs~~~~~~~~~~~ 210 (290)
+.+.+.+ .|.+-|++-+.|+.+.-....+. ..++... ++++ +||+.|..=..
T Consensus 201 ~A~~~~~----aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~t---------- 266 (369)
T TIGR01304 201 TALHLMR----TGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIET---------- 266 (369)
T ss_pred HHHHHHH----cCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC----------
Confidence 8776653 57766664444433211000011 1233332 2233 89988633211
Q ss_pred CCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 211 GGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 211 ~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
+ ..++ .|+++||+|+++=.
T Consensus 267 ------g-----~di~-kAlAlGAdaV~iGt 285 (369)
T TIGR01304 267 ------S-----GDLV-KAIACGADAVVLGS 285 (369)
T ss_pred ------H-----HHHH-HHHHcCCCEeeeHH
Confidence 2 3344 57899999999865
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=9 Score=40.61 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=99.7
Q ss_pred HHhhhcCCCCeEEEEccC-------CccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHH
Q 022892 7 LFNQLKAAEPFFLLAGPN-------VIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKIL 79 (290)
Q Consensus 7 ~~~~i~~~~~~~iIAgpc-------sien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L 79 (290)
++..+.....+-||||.- .|...-...++|+...+ .|+.+|--- |-+..|+ ..+..|
T Consensus 40 ~~~al~~~~~~~vIaEiKraSPs~G~i~~~~d~~~~a~~y~~----~GA~aiSVl-------Te~~~F~-----Gs~~~l 103 (695)
T PRK13802 40 ATRWLKRADGIPVIAEIKRASPSKGHLSDIPDPAALAREYEQ----GGASAISVL-------TEGRRFL-----GSLDDF 103 (695)
T ss_pred HHHHHhhCCCCeEEEEeecCCCCCCcCCCCCCHHHHHHHHHH----cCCcEEEEe-------cCcCcCC-----CCHHHH
Confidence 333443333478999753 22112245677776665 699887532 2222243 346778
Q ss_pred HHHHHhcCCcEEEe--ecCcccHHHHhh-hcceecccCCccCC--H-HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 022892 80 EKVKIAYDIPIVTD--VHETVQCEEVGK-VADIIQIPAFLCRQ--T-DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 153 (290)
Q Consensus 80 ~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~~n--~-~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i 153 (290)
+++++...+|++.- +.|+.++..... ..|++-+=.+.+.. + .|++.+.++|+-+++... +.+|+..|++
T Consensus 104 ~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh---~~~el~~a~~-- 178 (695)
T PRK13802 104 DKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETH---TREEIERAIA-- 178 (695)
T ss_pred HHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHh--
Confidence 88888899999983 667777777666 57877666665543 3 577778889999999986 8899998875
Q ss_pred HHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh
Q 022892 154 RLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE 187 (290)
Q Consensus 154 ~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~ 187 (290)
.|..=|-+=.|. ..+..+|+.....|..
T Consensus 179 --~ga~iiGINnRd----L~tf~vd~~~t~~L~~ 206 (695)
T PRK13802 179 --AGAKVIGINARN----LKDLKVDVNKYNELAA 206 (695)
T ss_pred --CCCCEEEEeCCC----CccceeCHHHHHHHHh
Confidence 455444444443 4456688877777765
|
|
| >PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3 | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.44 Score=45.36 Aligned_cols=79 Identities=18% Similarity=0.106 Sum_probs=50.0
Q ss_pred eecccCCc--cCCH--HHHHHHH----hcCCeEEEeCCCCC-CHHHHHHHHHHHHHcCC--CcEEEEeecCCCCCCCCCC
Q 022892 109 IIQIPAFL--CRQT--DLLVAAA----KTGKIINIKKGQFC-ASSVMVNSAEKVRLAGN--PNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 109 ~~kIgs~~--~~n~--~lL~~~a----~~~~PVilstG~~~-tl~e~~~Ave~i~~~Gn--~~i~L~~~gs~~~y~~~~~ 177 (290)
++|.++.. ++.. -+++++| .+|.||.+-++... ..- ..++++.+.|- .+++++|...+ .
T Consensus 126 ~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~---e~~~il~e~Gv~~~rvvigH~D~~-------~ 195 (308)
T PF02126_consen 126 IIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGTRMGL---EQLDILEEEGVDPSRVVIGHMDRN-------P 195 (308)
T ss_dssp EEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHH---HHHHHHHHTT--GGGEEETSGGGS-------T
T ss_pred heeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHH---HHHHHHHHcCCChhHeEEeCCCCC-------C
Confidence 67765544 4433 4667765 47999999998873 233 34567788874 37999998742 2
Q ss_pred CchhHHHHHhcCCCEEEeCC
Q 022892 178 DPRNLEWMREANCPVVADVT 197 (290)
Q Consensus 178 dL~~i~~lk~~~~pV~~D~s 197 (290)
|+..+..+-+.|+-|.||.=
T Consensus 196 D~~y~~~la~~G~~l~~D~~ 215 (308)
T PF02126_consen 196 DLDYHRELADRGVYLEFDTI 215 (308)
T ss_dssp -HHHHHHHHHTT-EEEETTT
T ss_pred CHHHHHHHHhcCCEEEecCC
Confidence 55556666557888888754
|
1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A .... |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=5.3 Score=40.37 Aligned_cols=214 Identities=16% Similarity=0.162 Sum_probs=119.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEecc---ccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-------eecCc
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKS---SFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-------DVHET 97 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~---~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-------~~~d~ 97 (290)
+.++.+..|..|-+ +|+..+=.- +|+..-| |-...-++-|+.+++...+..+-.+. ....+
T Consensus 33 ~t~d~l~ia~~ld~----~G~~siE~wGGAtfd~~~r-----fl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~yp 103 (468)
T PRK12581 33 SIEDMLPVLTILDK----IGYYSLECWGGATFDACIR-----FLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYA 103 (468)
T ss_pred CHHHHHHHHHHHHh----cCCCEEEecCCcchhhhhc-----ccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCc
Confidence 45778888888877 498876441 2331111 21111123344444444333333332 33334
Q ss_pred cc-----HHHHhh-hcceecccCCcc--CCH-HHHHHHHhcCCeEEEeCCC----CCCHHHHHHHHHHHHHcCCCcEEEE
Q 022892 98 VQ-----CEEVGK-VADIIQIPAFLC--RQT-DLLVAAAKTGKIINIKKGQ----FCASSVMVNSAEKVRLAGNPNVMVC 164 (290)
Q Consensus 98 ~~-----~~~l~~-~~d~~kIgs~~~--~n~-~lL~~~a~~~~PVilstG~----~~tl~e~~~Ave~i~~~Gn~~i~L~ 164 (290)
++ ++...+ .+|++-|..... .|. ..++.+.+.|+-+.+.-+. -.|++=+.+.++.+.+.|.+.|.|+
T Consensus 104 ddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~Ik 183 (468)
T PRK12581 104 DDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIK 183 (468)
T ss_pred chHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEC
Confidence 44 555555 588888877543 333 2334455677754332222 2366778888888888898888887
Q ss_pred eecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 165 ERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 165 ~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.-.+.. .|.. +- .-+..+|+ .++||++ +.|.. .| +...-+.+|+.+||+ +|+.-.
T Consensus 184 DtaG~l-~P~~-v~-~Lv~alk~~~~~pi~~-H~Hnt---------------~G---lA~An~laAieAGad--~vD~ai 239 (468)
T PRK12581 184 DMAGIL-TPKA-AK-ELVSGIKAMTNLPLIV-HTHAT---------------SG---ISQMTYLAAVEAGAD--RIDTAL 239 (468)
T ss_pred CCCCCc-CHHH-HH-HHHHHHHhccCCeEEE-EeCCC---------------Cc---cHHHHHHHHHHcCCC--EEEeec
Confidence 766531 2211 11 34566677 7899999 88874 13 224556789999998 788766
Q ss_pred CCCCC-------------C--CCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 244 DPLNA-------------P--VDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 244 t~dka-------------~--~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
.+=-. + .+...-++++.|.++-+.+++++..
T Consensus 240 ~g~g~gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~vr~~ 285 (468)
T PRK12581 240 SPFSEGTSQPATESMYLALKEAGYDITLDETLLEQAANHLRQARQK 285 (468)
T ss_pred cccCCCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 53110 0 1333456666665555555554443
|
|
| >PTZ00066 pyruvate kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=2.3 Score=43.42 Aligned_cols=126 Identities=12% Similarity=0.102 Sum_probs=89.8
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC--CcEEEeecCcccHHHHhh---hcceecccCC
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD--IPIVTDVHETVQCEEVGK---VADIIQIPAF 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G--i~~~s~~~d~~~~~~l~~---~~d~~kIgs~ 115 (290)
+.+.+.|+|+|...+-.. .+.+..+++++.+.| +++++-+-.++.++-+.+ ..|-+-|+=+
T Consensus 217 ~f~~~~~vD~IalSFVr~--------------a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~sDGIMVARG 282 (513)
T PTZ00066 217 NFAIPMGCDFIALSFVQS--------------ADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAESDGIMVARG 282 (513)
T ss_pred HHHHhcCCCEEEECCCCC--------------HHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHhcCEEEEEcc
Confidence 567778999887653221 478899999998876 889999988888877766 5899999888
Q ss_pred cc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCC
Q 022892 116 LC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLI 176 (290)
Q Consensus 116 ~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~ 176 (290)
|+ -|-.+++.+-..+||||+.|-|- .|-.|+-+.+..+. .|-+-++|-.-+..-.||-
T Consensus 283 DLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~-DG~DavMLSgETA~G~yPv-- 359 (513)
T PTZ00066 283 DLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVL-DGTDCVMLSGETANGKFPV-- 359 (513)
T ss_pred ccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHH-hCCcEEEecchhcCCcCHH--
Confidence 87 34566777788999999987763 35577777776665 4666666644443323775
Q ss_pred CCchhHHHHH
Q 022892 177 VDPRNLEWMR 186 (290)
Q Consensus 177 ~dL~~i~~lk 186 (290)
.++.+|.
T Consensus 360 ---eaV~~m~ 366 (513)
T PTZ00066 360 ---EAVNIMA 366 (513)
T ss_pred ---HHHHHHH
Confidence 3555553
|
|
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=11 Score=36.57 Aligned_cols=177 Identities=16% Similarity=0.119 Sum_probs=103.0
Q ss_pred CCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE
Q 022892 13 AAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 13 ~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
.+.++|+|..++. ..++...++. +.|+.+|-. -.| . .+. ....+-.+.|.++|+++|++|+.
T Consensus 145 ~~~~LylIT~~~~-----~ll~~l~~al----~~Gv~~VQL--R~K-~-~~~-----~~~~~~a~~L~~l~~~~~~~lII 206 (347)
T PRK02615 145 KDARLYLITSPSE-----NLLEVVEAAL----KGGVTLVQY--RDK-T-ADD-----RQRLEEAKKLKELCHRYGALFIV 206 (347)
T ss_pred ccCCEEEEECCch-----hHHHHHHHHH----HcCCCEEEE--CCC-C-CCH-----HHHHHHHHHHHHHHHHhCCeEEE
Confidence 4567999998832 2344444444 358776532 122 0 000 00124456799999999999887
Q ss_pred eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC--
Q 022892 93 DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-- 169 (290)
Q Consensus 93 ~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-- 169 (290)
.= .++.... .+|-+-+|..++.-... +..-..++-|..|+ . |++|+..|.+ .|.+.+.+-+...+
T Consensus 207 ND----~vdlAl~~~aDGVHLgq~dl~~~~a-R~llg~~~iIG~S~--H-s~~e~~~A~~----~GaDYI~lGPvf~T~t 274 (347)
T PRK02615 207 ND----RVDIALAVDADGVHLGQEDLPLAVA-RQLLGPEKIIGRST--T-NPEEMAKAIA----EGADYIGVGPVFPTPT 274 (347)
T ss_pred eC----hHHHHHHcCCCEEEeChhhcCHHHH-HHhcCCCCEEEEec--C-CHHHHHHHHH----cCCCEEEECCCcCCCC
Confidence 63 3555544 47778888776532222 22222344455555 4 8999888754 57777776544322
Q ss_pred -CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 170 -FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 170 -~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.++ ..+.+..+..+.+ +.+||+.= ||.. +.-.....+.|++|+.+-.-+.
T Consensus 275 Kp~~--~~~Gle~l~~~~~~~~iPv~Ai--------------------GGI~---~~ni~~l~~~Ga~gVAvisaI~ 326 (347)
T PRK02615 275 KPGK--APAGLEYLKYAAKEAPIPWFAI--------------------GGID---KSNIPEVLQAGAKRVAVVRAIM 326 (347)
T ss_pred CCCC--CCCCHHHHHHHHHhCCCCEEEE--------------------CCCC---HHHHHHHHHcCCcEEEEeHHHh
Confidence 112 2355667777776 78998651 2311 2223355688999999988774
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.2 Score=41.35 Aligned_cols=149 Identities=16% Similarity=0.093 Sum_probs=82.5
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc------------CCHHHHH---HHH-hcCCe-EEEeCCC
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC------------RQTDLLV---AAA-KTGKI-INIKKGQ 139 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~------------~n~~lL~---~~a-~~~~P-VilstG~ 139 (290)
.|++..++-...++-++||..++..+++ .+|++.+|+... +-.+++. .+. ..+.| |+.-.+.
T Consensus 3 ~lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~f 82 (254)
T cd06557 3 DLQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPF 82 (254)
T ss_pred hHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCC
Confidence 4566656666777889999999999988 699988885421 2223333 333 35678 6655542
Q ss_pred C---CCHHH-HHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEE----EeCCCCCCCCCCCccCCC
Q 022892 140 F---CASSV-MVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV----ADVTHSLQQPAGKKLDGG 211 (290)
Q Consensus 140 ~---~tl~e-~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~----~D~sHs~~~~~~~~~~~~ 211 (290)
. -++++ +.++++.+++.|-. -+=+|-+. + -...|..+.+.++||+ +.+-+.+...|..
T Consensus 83 g~y~~~~~~av~~a~r~~~~aGa~-aVkiEd~~------~--~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~----- 148 (254)
T cd06557 83 GSYQTSPEQALRNAARLMKEAGAD-AVKLEGGA------E--VAETIRALVDAGIPVMGHIGLTPQSVNQLGGYK----- 148 (254)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCe-EEEEcCcH------H--HHHHHHHHHHcCCCeeccccccceeeeccCCce-----
Confidence 2 12555 55666666667753 33444431 1 1234555555788876 3333222111110
Q ss_pred CccCCCCc----ccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 212 GVASGGLR----ELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 212 ~~~~~g~~----~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.-|+. +.+..-+++-..+||+++++|-=+
T Consensus 149 ---~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~ 181 (254)
T cd06557 149 ---VQGKTEEEAERLLEDALALEEAGAFALVLECVP 181 (254)
T ss_pred ---eccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 01211 112233444467899999999643
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.79 Score=48.35 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccC----CHHHHHHHH---hcCCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCR----QTDLLVAAA---KTGKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~----n~~lL~~~a---~~~~PVilstG~~~tl~ 144 (290)
.+.|+.|.++|+++|+..+.|+++.++++...+ ..+++-|-.|++. +...-..+. ..+..++-..|.. +.+
T Consensus 146 ~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~-~~~ 224 (695)
T PRK13802 146 DAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVF-GAV 224 (695)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCC-CHH
Confidence 468999999999999999999999999998877 7999999999884 222112222 1245566668988 999
Q ss_pred HHHHHHH
Q 022892 145 VMVNSAE 151 (290)
Q Consensus 145 e~~~Ave 151 (290)
|+....+
T Consensus 225 d~~~l~~ 231 (695)
T PRK13802 225 EVEDYAR 231 (695)
T ss_pred HHHHHHH
Confidence 9887654
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=92.24 E-value=5.7 Score=36.44 Aligned_cols=157 Identities=13% Similarity=0.003 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhc-CCeEEEe-----CC------
Q 022892 74 EGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKT-GKIINIK-----KG------ 138 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~-~~PVils-----tG------ 138 (290)
..+..+++++++..+|+-. =+-+.++++.+.+ .++.+-||+...+|..+++++++. +--|++| .|
T Consensus 61 ~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~ 140 (243)
T TIGR01919 61 NNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLG 140 (243)
T ss_pred chHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEE
Confidence 3466788888888777544 6788888887666 699999999999999999998753 2224442 22
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCcc
Q 022892 139 ---QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVA 214 (290)
Q Consensus 139 ---~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~ 214 (290)
-.-+-.++...++.+...|-..+++.. ..+-+.- .=.|+..+..+++ .++||++-
T Consensus 141 ~~Gw~~~~~~~~~~~~~~~~~g~~~ii~td-I~~dGt~-~G~d~~l~~~l~~~~~~pvias------------------- 199 (243)
T TIGR01919 141 NRGWSDGGGDLEVLERLLDSGGCSRVVVTD-SKKDGLS-GGPNELLLEVVAARTDAIVAAS------------------- 199 (243)
T ss_pred CCCeecCCCcHHHHHHHHHhCCCCEEEEEe-cCCcccC-CCcCHHHHHHHHhhCCCCEEEE-------------------
Confidence 011233455556666777766655543 3321110 1246777788877 78999871
Q ss_pred CCCCcccHHHHHHH--HHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHH
Q 022892 215 SGGLRELIPCIART--AIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNL 261 (290)
Q Consensus 215 ~~g~~~~~~~~a~a--Ava~GA~G~~IEkH~t~dka~~D~~~sl~p~~l 261 (290)
+|.+.. ..+... ....|++|+++=+-+ |...++++|.
T Consensus 200 -GGv~s~-eDl~~l~~l~~~Gv~gvivg~Al--------~~g~i~~~~~ 238 (243)
T TIGR01919 200 -GGSSLL-DDLRAIKYLDEGGVSVAIGGKLL--------YARFFTLEAA 238 (243)
T ss_pred -CCcCCH-HHHHHHHhhccCCeeEEEEhHHH--------HcCCCCHHHH
Confidence 122211 223222 125699999998766 4445666654
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=92.18 E-value=6.5 Score=33.30 Aligned_cols=92 Identities=18% Similarity=0.150 Sum_probs=52.1
Q ss_pred HHHHHHHh---cCCeEEEeCCCCC--CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCE
Q 022892 121 DLLVAAAK---TGKIINIKKGQFC--ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPV 192 (290)
Q Consensus 121 ~lL~~~a~---~~~PVilstG~~~--tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV 192 (290)
+.++++.. .+.||++.+-... +++++...++.+...| +..+.-.+ ++.....|+..+..+++ . ++||
T Consensus 101 ~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g---~~~iK~~~--~~~~~~~~~~~~~~i~~~~~~~~~v 175 (201)
T cd00945 101 EEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAG---ADFIKTST--GFGGGGATVEDVKLMKEAVGGRVGV 175 (201)
T ss_pred HHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhC---CCEEEeCC--CCCCCCCCHHHHHHHHHhcccCCcE
Confidence 34445554 3899999875332 5778877766554433 33333222 11112246667777766 5 5677
Q ss_pred EEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 193 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 193 ~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
.+.+... . ......+..+||+|+++
T Consensus 176 ~~~gg~~-----------------~-----~~~~~~~~~~Ga~g~~~ 200 (201)
T cd00945 176 KAAGGIK-----------------T-----LEDALAAIEAGADGIGT 200 (201)
T ss_pred EEECCCC-----------------C-----HHHHHHHHHhccceeec
Confidence 6533222 1 34566778889999764
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=1.6 Score=41.35 Aligned_cols=76 Identities=13% Similarity=0.021 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCcEEEee----------------cCcccHHHHhh-hcceecccCCcc----------CCHHHHHHHH
Q 022892 75 GLKILEKVKIAYDIPIVTDV----------------HETVQCEEVGK-VADIIQIPAFLC----------RQTDLLVAAA 127 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~----------------~d~~~~~~l~~-~~d~~kIgs~~~----------~n~~lL~~~a 127 (290)
--+++.++|+++|+++..|+ .+++++..+.+ .+|++.+|=+.+ -++++|+++.
T Consensus 118 ~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~ 197 (293)
T PRK07315 118 LAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLT 197 (293)
T ss_pred HHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHH
Confidence 34457888888888875543 34444444333 577777662222 3456666665
Q ss_pred h-c-CCeEEEeCCCCCCHHHHHHHH
Q 022892 128 K-T-GKIINIKKGQFCASSVMVNSA 150 (290)
Q Consensus 128 ~-~-~~PVilstG~~~tl~e~~~Av 150 (290)
+ . +.|+++==|...+.+++..++
T Consensus 198 ~~~~~iPlVlhGGSGi~~e~~~~~i 222 (293)
T PRK07315 198 EAVPGFPIVLHGGSGIPDDQIQEAI 222 (293)
T ss_pred HhccCCCEEEECCCCCCHHHHHHHH
Confidence 4 3 366666655555555555543
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.7 Score=42.67 Aligned_cols=132 Identities=22% Similarity=0.157 Sum_probs=78.7
Q ss_pred HHHHHH-HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeC
Q 022892 121 DLLVAA-AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADV 196 (290)
Q Consensus 121 ~lL~~~-a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~ 196 (290)
+-|+.+ ..++.||++| |.. +.++.+.|++ .|-+-|++-..|..- .+...--+..++.+++ . .+||++|.
T Consensus 243 ~~i~~lr~~~~~pvivK-gV~-~~~dA~~a~~----~G~d~I~vsnhGGr~-~d~~~~t~~~L~ei~~~~~~~~~vi~dG 315 (383)
T cd03332 243 EDLAFLREWTDLPIVLK-GIL-HPDDARRAVE----AGVDGVVVSNHGGRQ-VDGSIAALDALPEIVEAVGDRLTVLFDS 315 (383)
T ss_pred HHHHHHHHhcCCCEEEe-cCC-CHHHHHHHHH----CCCCEEEEcCCCCcC-CCCCcCHHHHHHHHHHHhcCCCeEEEeC
Confidence 334554 4568999999 555 7888888765 577777776666531 1111112346666665 4 48998863
Q ss_pred CCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 197 THSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 197 sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
-=- .| ..++ .|.++||++++|-.-|--.-+ .++ ..---.-++.|.++++..-..+|
T Consensus 316 GIr----------------~G-----~Dv~-KALaLGA~~v~iGr~~l~~l~-~~G-~~gv~~~l~~l~~El~~~m~l~G 371 (383)
T cd03332 316 GVR----------------TG-----ADIM-KALALGAKAVLIGRPYAYGLA-LGG-EDGVEHVLRNLLAELDLTMGLAG 371 (383)
T ss_pred CcC----------------cH-----HHHH-HHHHcCCCEEEEcHHHHHHHH-hcc-HHHHHHHHHHHHHHHHHHHHHHC
Confidence 322 13 3455 479999999999877631100 010 00011246666777777777888
Q ss_pred Ccccccc
Q 022892 277 GKQRMNI 283 (290)
Q Consensus 277 ~~~~~~~ 283 (290)
.+++-++
T Consensus 372 ~~~i~~l 378 (383)
T cd03332 372 IRSIAEL 378 (383)
T ss_pred CCCHHHh
Confidence 8766544
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=92.01 E-value=2.3 Score=38.45 Aligned_cols=124 Identities=16% Similarity=0.129 Sum_probs=73.3
Q ss_pred CHHHHHHHHhcC--CeE-EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-C---CCCC---CCCC--chhHHHHH
Q 022892 119 QTDLLVAAAKTG--KII-NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-F---GYND---LIVD--PRNLEWMR 186 (290)
Q Consensus 119 n~~lL~~~a~~~--~PV-ilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~---~y~~---~~~d--L~~i~~lk 186 (290)
..++++++.+.+ .++ .+.++. .++ ++.....|...+.+...++. + .+.. ..++ +.++...+
T Consensus 53 ~~~~i~~l~~~~~~~~~~~l~~~~---~~~----i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~ 125 (265)
T cd03174 53 DWEVLRAIRKLVPNVKLQALVRNR---EKG----IERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK 125 (265)
T ss_pred HHHHHHHHHhccCCcEEEEEccCc---hhh----HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 346677777765 455 555542 333 44445567677777766651 0 0000 0111 24445555
Q ss_pred hcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHH
Q 022892 187 EANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLE 266 (290)
Q Consensus 187 ~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~ 266 (290)
+.|+.|.++...... | .-..+.+..++..+..+|++.+. ++|..-.+.|++++++++
T Consensus 126 ~~G~~v~~~~~~~~~-~------------~~~~~~l~~~~~~~~~~g~~~i~----------l~Dt~G~~~P~~v~~li~ 182 (265)
T cd03174 126 EAGLEVEGSLEDAFG-C------------KTDPEYVLEVAKALEEAGADEIS----------LKDTVGLATPEEVAELVK 182 (265)
T ss_pred HCCCeEEEEEEeecC-C------------CCCHHHHHHHHHHHHHcCCCEEE----------echhcCCcCHHHHHHHHH
Confidence 578887775544320 0 01245667788888999998432 257777899999999999
Q ss_pred HHHHHH
Q 022892 267 ELVAIA 272 (290)
Q Consensus 267 ~ir~~~ 272 (290)
.+++..
T Consensus 183 ~l~~~~ 188 (265)
T cd03174 183 ALREAL 188 (265)
T ss_pred HHHHhC
Confidence 988643
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2 | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.56 Score=45.33 Aligned_cols=134 Identities=18% Similarity=0.168 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc--CCcEEEeecCcccHHHHhh---hcc
Q 022892 34 RMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY--DIPIVTDVHETVQCEEVGK---VAD 108 (290)
Q Consensus 34 e~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~--Gi~~~s~~~d~~~~~~l~~---~~d 108 (290)
+.=++.++.+.+.|+|+|...+-.. .+.+..+++++.+. .+.+++-+-....++-+.+ ..|
T Consensus 176 ekD~~di~fa~~~~vD~IalSFVrs--------------a~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sD 241 (348)
T PF00224_consen 176 EKDKEDIKFAVENGVDFIALSFVRS--------------AEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEASD 241 (348)
T ss_dssp HHHHHHHHHHHHTT-SEEEETTE-S--------------HHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHHSS
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCc--------------hHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhhcC
Confidence 3344555677778999987653221 47789999999775 5789999998888877766 488
Q ss_pred eecccCCcc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 109 IIQIPAFLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 109 ~~kIgs~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
.+-|+-+++ .|-.+++.+-..+|||++.|.|- .|-.|+-..+..+.. |.+-++|---++.
T Consensus 242 gimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~d-g~d~vmLs~ETa~ 320 (348)
T PF00224_consen 242 GIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLD-GADAVMLSGETAI 320 (348)
T ss_dssp EEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHH-T-SEEEESHHHHT
T ss_pred eEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHc-CCCEEEecCCcCC
Confidence 888887766 34456677778899999999883 366888888877764 6655555322222
Q ss_pred CCCCCCCCCchhHHHHHh
Q 022892 170 FGYNDLIVDPRNLEWMRE 187 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~ 187 (290)
-.||. .++.+|++
T Consensus 321 G~~p~-----~~v~~~~~ 333 (348)
T PF00224_consen 321 GKYPV-----EAVKTMAR 333 (348)
T ss_dssp SSSHH-----HHHHHHHH
T ss_pred CCCHH-----HHHHHHHH
Confidence 13664 46666643
|
7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: |
| >PRK13753 dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=11 Score=35.51 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH----HHHHHHHhcCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK----ILEKVKIAYDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~----~L~~~~~~~Gi~~~s~~~d~~~~~~l 103 (290)
+.+..++.|+++++. ||++|=-..-. |.|++ +....++.++ .++.+ .+.++++-.+-|+++.++..
T Consensus 23 ~~d~a~~~a~~m~~~----GAdIIDIGgeS----TrPga-~~vs~eeE~~Rv~pvI~~l-~~~~~~ISIDT~~~~va~~a 92 (279)
T PRK13753 23 DPAGAVTAAIEMLRV----GSDVVDVGPAA----SHPDA-RPVSPADEIRRIAPLLDAL-SDQMHRVSIDSFQPETQRYA 92 (279)
T ss_pred CHHHHHHHHHHHHHC----CCcEEEECCCC----CCCCC-CcCCHHHHHHHHHHHHHHH-HhCCCcEEEECCCHHHHHHH
Confidence 678899999999884 99998766433 22321 1111234444 23333 44588888899999999887
Q ss_pred hh-hccee-cccCCccCCHHHHHHHHhcCCeEEEeCCC--------CC--CHH----HHH----HHHHHHHHcCC-CcEE
Q 022892 104 GK-VADII-QIPAFLCRQTDLLVAAAKTGKIINIKKGQ--------FC--ASS----VMV----NSAEKVRLAGN-PNVM 162 (290)
Q Consensus 104 ~~-~~d~~-kIgs~~~~n~~lL~~~a~~~~PVilstG~--------~~--tl~----e~~----~Ave~i~~~Gn-~~i~ 162 (290)
.+ .+|++ -|.++ ++..+++.+++.+.|++|---. .. ..+ |+. .-++.+.+.|- ++=+
T Consensus 93 l~aGadiINDVsg~--~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~I 170 (279)
T PRK13753 93 LKRGVGYLNDIQGF--PDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRL 170 (279)
T ss_pred HHcCCCEEEeCCCC--CchHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhE
Confidence 66 67765 45544 3667777788999999884321 10 111 222 22345666773 3446
Q ss_pred EEeecCCCCC-CCCCCC---chhHHHHHh-cCCCEEEeCC
Q 022892 163 VCERGTMFGY-NDLIVD---PRNLEWMRE-ANCPVVADVT 197 (290)
Q Consensus 163 L~~~gs~~~y-~~~~~d---L~~i~~lk~-~~~pV~~D~s 197 (290)
++.-|.-|+. .+.+-| |+.+..++. +|+||.+-.|
T Consensus 171 ilDPGiGF~k~k~~~~n~~ll~~l~~l~~~~g~PvLvg~S 210 (279)
T PRK13753 171 ILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVS 210 (279)
T ss_pred EEeCCCCCCCCCChHHHHHHHHhHHHHHHhCCCceEEEcc
Confidence 7777765532 121223 455566665 7899866333
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.94 E-value=3.4 Score=38.33 Aligned_cols=132 Identities=12% Similarity=0.048 Sum_probs=89.7
Q ss_pred hhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH
Q 022892 5 TALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI 84 (290)
Q Consensus 5 ~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~ 84 (290)
..++..|.. .++.++---..+.|-+.+..+|+--.++ .|-+.||..-... +++. .....++-+.|+
T Consensus 52 ~~~~~~i~~-~~~~~lpNTaG~~ta~eAv~~a~lare~---~~~~~iKlEVi~d-~~~l---------lpd~~~tv~aa~ 117 (250)
T PRK00208 52 DNLLDLLPP-LGVTLLPNTAGCRTAEEAVRTARLAREA---LGTNWIKLEVIGD-DKTL---------LPDPIETLKAAE 117 (250)
T ss_pred chHHhhccc-cCCEECCCCCCCCCHHHHHHHHHHHHHH---hCCCeEEEEEecC-CCCC---------CcCHHHHHHHHH
Confidence 356666643 2333332222234677777777776665 4678898876542 3221 234555666667
Q ss_pred hc---CCcEE-EeecCcccHHHHhh-hcceec-----ccCC-ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 85 AY---DIPIV-TDVHETVQCEEVGK-VADIIQ-----IPAF-LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 85 ~~---Gi~~~-s~~~d~~~~~~l~~-~~d~~k-----Igs~-~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
++ |+.++ -..-|+..+..+++ .++++- |||+ -+.|.++++.+.+ .+.||+.--|.. +++++..|.+
T Consensus 118 ~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~-tpeda~~Ame 195 (250)
T PRK00208 118 ILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDAGIG-TPSDAAQAME 195 (250)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCC-CHHHHHHHHH
Confidence 77 99999 78888888888888 577663 3444 2368889988876 588999999999 9999999877
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=91.90 E-value=6 Score=40.26 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------CCCC-CCCC--chhHHHHHhcCCC
Q 022892 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF------GYND-LIVD--PRNLEWMREANCP 191 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~------~y~~-~~~d--L~~i~~lk~~~~p 191 (290)
..+++++...+..-+..-..+..++++.|++.+...|.+.+++.-..|.. +-.. +.++ ...+...|+.++.
T Consensus 56 ~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~ 135 (513)
T PRK00915 56 EAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDD 135 (513)
T ss_pred HHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 44455544333222222222368999999998888888888887766521 1111 1111 1344445556778
Q ss_pred EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 192 V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
|.|++-.+. .-..+++..++.++..+||+-+ .++|---.+.|.++.++++.+++.
T Consensus 136 v~f~~ed~~---------------r~d~~~l~~~~~~~~~~Ga~~i----------~l~DTvG~~~P~~~~~~i~~l~~~ 190 (513)
T PRK00915 136 VEFSAEDAT---------------RTDLDFLCRVVEAAIDAGATTI----------NIPDTVGYTTPEEFGELIKTLRER 190 (513)
T ss_pred EEEEeCCCC---------------CCCHHHHHHHHHHHHHcCCCEE----------EEccCCCCCCHHHHHHHHHHHHHh
Confidence 888655431 1125667788888899999732 237988999999999999998753
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=91.80 E-value=8.3 Score=33.68 Aligned_cols=167 Identities=16% Similarity=0.132 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccc-cccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEEe--ecCcc--cHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSS-FDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVTD--VHETV--QCE 101 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~-~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s~--~~d~~--~~~ 101 (290)
|.+..++.++.| + .|++++...+ +. ...+++.++++++.+ +..++.+ ++|+. +++
T Consensus 10 ~~~~a~~~~~~l-~----~~v~~iev~~~l~--------------~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~ 70 (206)
T TIGR03128 10 DIEEALELAEKV-A----DYVDIIEIGTPLI--------------KNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAE 70 (206)
T ss_pred CHHHHHHHHHHc-c----cCeeEEEeCCHHH--------------HHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHH
Confidence 566666666666 3 5788777631 11 134566666666654 4556655 45776 566
Q ss_pred HHhh-hcceecccCCccC--CHHHHHHHHhcCCeEEEeC-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CCCCCCC
Q 022892 102 EVGK-VADIIQIPAFLCR--QTDLLVAAAKTGKIINIKK-GQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-FGYNDLI 176 (290)
Q Consensus 102 ~l~~-~~d~~kIgs~~~~--n~~lL~~~a~~~~PVilst-G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~~y~~~~ 176 (290)
.+.+ .+|++-+....-. ...+++.+-+.|+++++.- +..-..+++..+.+ .|- +++-++-|.. ..+. .
T Consensus 71 ~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~----~g~-d~v~~~pg~~~~~~~--~ 143 (206)
T TIGR03128 71 QAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE----LGA-DYIGVHTGLDEQAKG--Q 143 (206)
T ss_pred HHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH----cCC-CEEEEcCCcCcccCC--C
Confidence 6666 6999887776432 2467788888999999752 43313466666543 344 4444443321 0111 1
Q ss_pred CCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 177 VDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 177 ~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..+..+..+++ . .++|.++. ++ + ..-.......||+++++=+-+
T Consensus 144 ~~~~~i~~l~~~~~~~~i~v~G--GI----------------~-----~~n~~~~~~~Ga~~v~vGsai 189 (206)
T TIGR03128 144 NPFEDLQTILKLVKEARVAVAG--GI----------------N-----LDTIPDVIKLGPDIVIVGGAI 189 (206)
T ss_pred CCHHHHHHHHHhcCCCcEEEEC--Cc----------------C-----HHHHHHHHHcCCCEEEEeehh
Confidence 23445666666 3 34554431 11 1 233445678899999887665
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK05826 pyruvate kinase; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=2.6 Score=42.52 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=84.7
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc---CCcEEEeecCcccHHHHhh---hcceecccCCc
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY---DIPIVTDVHETVQCEEVGK---VADIIQIPAFL 116 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~---Gi~~~s~~~d~~~~~~l~~---~~d~~kIgs~~ 116 (290)
+-+.|++.|....-.. .+..+.++++..+. .+.+++-+-+++.++-+++ .+|.+-||-+|
T Consensus 182 ald~g~d~I~~sfV~s--------------aedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~DgImIgrgD 247 (465)
T PRK05826 182 AAEQGVDYIAVSFVRS--------------AEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDGIMVARGD 247 (465)
T ss_pred HHHCCCCEEEECCCCC--------------HHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCEEEECcch
Confidence 3447999888753331 47788888998775 4788888988888877766 59999999998
Q ss_pred c-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC
Q 022892 117 C-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 117 ~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~ 177 (290)
+ -+..+++.+-+.||||++.|-|- .|-.|+-..+..+. .|.+-++|---+..-.||.
T Consensus 248 Lg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~-dG~D~vmLS~ETA~G~yPv--- 323 (465)
T PRK05826 248 LGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVL-DGTDAVMLSGETAAGKYPV--- 323 (465)
T ss_pred hhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHH-cCCcEEEeccccccCcCHH---
Confidence 7 23345566667899999986552 35566666666554 5676677754443323775
Q ss_pred CchhHHHHH
Q 022892 178 DPRNLEWMR 186 (290)
Q Consensus 178 dL~~i~~lk 186 (290)
.++.+|+
T Consensus 324 --eaV~~m~ 330 (465)
T PRK05826 324 --EAVEAMA 330 (465)
T ss_pred --HHHHHHH
Confidence 3555553
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=91.61 E-value=1.1 Score=41.24 Aligned_cols=157 Identities=13% Similarity=0.011 Sum_probs=88.3
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
|.+..++-...++.++||..++..+++ .+|.+.+|+.... +..|.| .++.- +++|+...+..|...
T Consensus 4 ~~~~~~~~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a--------~~~G~p---D~~~v-tl~em~~~~~~I~r~- 70 (240)
T cd06556 4 LQKYKQEKERFATLTAYDYSMAKQFADAGLNVMLVGDSQGM--------TVAGYD---DTLPY-PVNDVPYHVRAVRRG- 70 (240)
T ss_pred HHHHHhCCCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHH--------HhcCCC---CCCCc-CHHHHHHHHHHHHhh-
Confidence 333334446667779999999999998 6999999996542 233666 44444 999999999988753
Q ss_pred CCc-EEEEeecCCCCCCC-CCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 158 NPN-VMVCERGTMFGYND-LIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 158 n~~-i~L~~~gs~~~y~~-~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
.+. .++...-+-| |.. +.+ .+++..+-+.|.. ++ |- .++.+++. ...++++.|.
T Consensus 71 ~~~~pviaD~~~G~-g~~~~~~-~~~~~~l~~aGa~-gv---~i----------------ED~~~~~~-~i~ai~~a~i- 126 (240)
T cd06556 71 APLALIVADLPFGA-YGAPTAA-FELAKTFMRAGAA-GV---KI----------------EGGEWHIE-TLQMLTAAAV- 126 (240)
T ss_pred CCCCCEEEeCCCCC-CcCHHHH-HHHHHHHHHcCCc-EE---EE----------------cCcHHHHH-HHHHHHHcCC-
Confidence 332 3455544322 111 111 1223333234432 11 11 12122222 2334455564
Q ss_pred EEEEeeeCCCCCC----CC-CCCCCCChHHHHHHHHHHHHHHHH
Q 022892 236 GVFMEVHDDPLNA----PV-DGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 236 G~~IEkH~t~dka----~~-D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
+|=-|.....+ .. +..+-.+.+++++++++.+..+++
T Consensus 127 --~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~A 168 (240)
T cd06556 127 --PVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPA 168 (240)
T ss_pred --eEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHc
Confidence 44477654221 11 333444577899999998888775
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PTZ00081 enolase; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=2.7 Score=42.01 Aligned_cols=94 Identities=18% Similarity=0.175 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh---c-ceecccCCc--cCCHHHHHHHHhcC--CeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV---A-DIIQIPAFL--CRQTDLLVAAAKTG--KIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~---~-d~~kIgs~~--~~n~~lL~~~a~~~--~PVilstG~~~tl~ 144 (290)
.+..+.+.+.+++++|.++=+|+.+++.+-+.++ + +-..|...+ ++|...++..-..+ --|.+|-++.+++.
T Consensus 284 ~eli~~~~~~l~~y~I~~IEDPl~~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGIT 363 (439)
T PTZ00081 284 EELVELYLDLVKKYPIVSIEDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVT 363 (439)
T ss_pred HHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHH
Confidence 4566778899999999999999999888777663 4 123444444 47787766654433 36888999988999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeec
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
|+.++++..+..|- .+++-||.
T Consensus 364 e~l~~a~lA~~~Gi-~~iishrs 385 (439)
T PTZ00081 364 EAIEAAKLAQKNGW-GVMVSHRS 385 (439)
T ss_pred HHHHHHHHHHHcCC-cEEEeCCC
Confidence 99999998887753 57777874
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.76 Score=43.22 Aligned_cols=74 Identities=9% Similarity=0.050 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCcEEE-----------------eecCcccHHHHhh--hcceecccCCcc---------CCHHHHHHHH
Q 022892 76 LKILEKVKIAYDIPIVT-----------------DVHETVQCEEVGK--VADIIQIPAFLC---------RQTDLLVAAA 127 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s-----------------~~~d~~~~~~l~~--~~d~~kIgs~~~---------~n~~lL~~~a 127 (290)
-+.+.++|+++|+.+-. +..+++++....+ .+|++-++-+.+ -++++|+++.
T Consensus 117 t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~ 196 (282)
T TIGR01859 117 TKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIK 196 (282)
T ss_pred HHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHH
Confidence 45688899999998873 3445555554443 577777432221 3455555554
Q ss_pred h-cCCeEEEeCCCCCCHHHHHHH
Q 022892 128 K-TGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 128 ~-~~~PVilstG~~~tl~e~~~A 149 (290)
+ .+.|+.+=-|...+.+++..+
T Consensus 197 ~~~~iPlv~hGgSGi~~e~i~~~ 219 (282)
T TIGR01859 197 ELTNIPLVLHGASGIPEEQIKKA 219 (282)
T ss_pred HHhCCCEEEECCCCCCHHHHHHH
Confidence 3 355665555444445555444
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PLN02461 Probable pyruvate kinase | Back alignment and domain information |
|---|
Probab=91.44 E-value=3.6 Score=42.03 Aligned_cols=126 Identities=14% Similarity=0.092 Sum_probs=88.9
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC--CcEEEeecCcccHHHHhh---hcceecccCC
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD--IPIVTDVHETVQCEEVGK---VADIIQIPAF 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G--i~~~s~~~d~~~~~~l~~---~~d~~kIgs~ 115 (290)
+.+.+.|+|.|...+-.. .+.+..+++++.+.| +++++-+-.++.++-+.+ ..|-+-|+=+
T Consensus 201 ~f~~~~~vD~ia~SFVr~--------------a~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi~~sDgIMVARG 266 (511)
T PLN02461 201 QWGVPNKIDFIALSFVRK--------------GSDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILAESDAFMVARG 266 (511)
T ss_pred HHHhhcCCCEEEECCCCC--------------HHHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHHHhcCEEEEecc
Confidence 456677999887653221 467888999987654 789999988888887776 5899999988
Q ss_pred cc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCC
Q 022892 116 LC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLI 176 (290)
Q Consensus 116 ~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~ 176 (290)
|+ .|-.+++.+-..+||||+.|-|- .|-.|+-..+..+. .|-+-++|-.-+..-.||.
T Consensus 267 DLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~-dG~D~vMLS~ETA~G~yPv-- 343 (511)
T PLN02461 267 DLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLSGETAAGAYPE-- 343 (511)
T ss_pred ccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHH-hCCcEEEEechhcCCCCHH--
Confidence 87 34466777788999999987663 35577777777665 4666677754444323775
Q ss_pred CCchhHHHHH
Q 022892 177 VDPRNLEWMR 186 (290)
Q Consensus 177 ~dL~~i~~lk 186 (290)
.++.+|+
T Consensus 344 ---eaV~~m~ 350 (511)
T PLN02461 344 ---LAVKTMA 350 (511)
T ss_pred ---HHHHHHH
Confidence 3555553
|
|
| >PRK06354 pyruvate kinase; Provisional | Back alignment and domain information |
|---|
Probab=91.44 E-value=2.1 Score=44.35 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=87.9
Q ss_pred HHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh---cCCcEEEeecCcccHHHHhh---hcceeccc
Q 022892 40 KSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA---YDIPIVTDVHETVQCEEVGK---VADIIQIP 113 (290)
Q Consensus 40 ~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~---~Gi~~~s~~~d~~~~~~l~~---~~d~~kIg 113 (290)
++.+.+.|+|.|...+-.. .+.+..++++..+ ..+.+++-+-..+.++-+.+ .+|.+-||
T Consensus 184 i~f~~~~~vD~ia~SFVr~--------------~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~DgImVa 249 (590)
T PRK06354 184 LIFGLEQGVDWIALSFVRN--------------PSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELCDGLMVA 249 (590)
T ss_pred HHHHHHcCCCEEEEcCCCC--------------HHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEEc
Confidence 4566678999887653221 4678888888843 35789999988888777766 59999999
Q ss_pred CCcc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 114 AFLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 114 s~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
-+|+ .|..+++.+-+.|||||+.|-|- .|=.|+-+.+..+. .|.+-++|..-+..-.||-
T Consensus 250 RGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~-DG~DavMLS~ETA~G~yPv 328 (590)
T PRK06354 250 RGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAIL-DGTDAVMLSNETAAGDYPV 328 (590)
T ss_pred cchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhh-hCCcEEEecccccCCCCHH
Confidence 9988 34456677788999999988763 24466666666555 5776677755544324775
Q ss_pred CCCCchhHHHHH
Q 022892 175 LIVDPRNLEWMR 186 (290)
Q Consensus 175 ~~~dL~~i~~lk 186 (290)
.++.+|+
T Consensus 329 -----eaV~~m~ 335 (590)
T PRK06354 329 -----EAVQTMA 335 (590)
T ss_pred -----HHHHHHH
Confidence 4555554
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.39 E-value=2 Score=42.03 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccC-CCCChhHHHHHHHHHHHhcCCcEEE-eecCcccHHHHhh-h
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSF-RGPGMVEGLKILEKVKIAYDIPIVT-DVHETVQCEEVGK-V 106 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~-~g~~~~~~l~~L~~~~~~~Gi~~~s-~~~d~~~~~~l~~-~ 106 (290)
....++++.+.+ +|+++|... .||....| .+.+ .+..+.+++++.++|++. .+.+.+.+..+.+ .
T Consensus 142 ~~~~e~a~~l~e----AGad~I~ih-----grt~~q~~~sg~~---~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aG 209 (369)
T TIGR01304 142 QNAREIAPIVVK----AGADLLVIQ-----GTLVSAEHVSTSG---EPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTG 209 (369)
T ss_pred cCHHHHHHHHHH----CCCCEEEEe-----ccchhhhccCCCC---CHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcC
Confidence 345566666655 699988764 44432223 1212 255688888999999998 8999998887776 7
Q ss_pred cceecccCCcc---C-----CHH---HHHHHH--------hcC---CeEEEeCCCCCCHHHHHHHHH
Q 022892 107 ADIIQIPAFLC---R-----QTD---LLVAAA--------KTG---KIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 107 ~d~~kIgs~~~---~-----n~~---lL~~~a--------~~~---~PVilstG~~~tl~e~~~Ave 151 (290)
+|.+.+|..-. + ..+ .+..++ .++ .|||-.=|.. +..++..|+.
T Consensus 210 aDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~-tg~di~kAlA 275 (369)
T TIGR01304 210 AAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIE-TSGDLVKAIA 275 (369)
T ss_pred CCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCC-CHHHHHHHHH
Confidence 99988774321 1 123 222222 123 7999999998 9999888864
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=91.36 E-value=5.8 Score=38.31 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc------------CCHHHH---HHHHh-cCCeEEE---
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC------------RQTDLL---VAAAK-TGKIINI--- 135 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~------------~n~~lL---~~~a~-~~~PVil--- 135 (290)
+..|++..++-.-.++.|.||..++..+++ .+|++-||+... +=-+++ +++.+ ...|+++
T Consensus 24 i~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDm 103 (332)
T PLN02424 24 LRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDL 103 (332)
T ss_pred HHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCC
Confidence 555666544444567779999999999998 699999999853 111233 44443 5778877
Q ss_pred eCCCC-CCHHHHHHHHHHH-HHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEE----EeCCCCCCCCCCCccC
Q 022892 136 KKGQF-CASSVMVNSAEKV-RLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV----ADVTHSLQQPAGKKLD 209 (290)
Q Consensus 136 stG~~-~tl~e~~~Ave~i-~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~----~D~sHs~~~~~~~~~~ 209 (290)
.-|.. .++++....+..+ ++.|. +.+=+|.|+. . ....+..|-+.|+||+ +.+-+.+..-|+
T Consensus 104 PfgSY~~s~e~av~nA~rl~~eaGa-~aVKlEGg~~-----~--~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGy---- 171 (332)
T PLN02424 104 PFGSYESSTDQAVESAVRMLKEGGM-DAVKLEGGSP-----S--RVTAAKAIVEAGIAVMGHVGLTPQAISVLGGF---- 171 (332)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCC-cEEEECCCcH-----H--HHHHHHHHHHcCCCEEEeecccceeehhhcCc----
Confidence 34422 3676655544444 55654 5666776631 0 1245555655799987 544433211110
Q ss_pred CCCccCCCCc-c---cHHHHHHHHHHcCCCEEEEeee
Q 022892 210 GGGVASGGLR-E---LIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 210 ~~~~~~~g~~-~---~~~~~a~aAva~GA~G~~IEkH 242 (290)
.--|+. + .+..-+++-.++||.++++|-=
T Consensus 172 ----kvqGr~~~~a~~li~dA~ale~AGAf~ivLE~V 204 (332)
T PLN02424 172 ----RPQGRTAESAVKVVETALALQEAGCFAVVLECV 204 (332)
T ss_pred ----cccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCC
Confidence 001211 1 2333444555789999999963
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=91.32 E-value=3.9 Score=37.29 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=48.0
Q ss_pred hcceecc------cCCccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC
Q 022892 106 VADIIQI------PAFLCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD 178 (290)
Q Consensus 106 ~~d~~kI------gs~~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d 178 (290)
.++.+-+ |...-.|+++++++.+ .+.||+.+-|.. +++++..+.+. .|-.-++ .|+.+.+. .++
T Consensus 166 g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~-s~~d~~~~~~~---~G~~gvi---vg~al~~~--~~~ 236 (253)
T PRK02083 166 GAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAG-NLEHFVEAFTE---GGADAAL---AASIFHFG--EIT 236 (253)
T ss_pred CCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHh---CCccEEe---EhHHHHcC--CCC
Confidence 3665544 3334468899988765 589999999999 99999886542 3433333 33332111 234
Q ss_pred chh-HHHHHhcCCCE
Q 022892 179 PRN-LEWMREANCPV 192 (290)
Q Consensus 179 L~~-i~~lk~~~~pV 192 (290)
+.. ...|+++|++|
T Consensus 237 ~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 237 IGELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHHHCCCcc
Confidence 444 45566678776
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=91.26 E-value=4.7 Score=37.65 Aligned_cols=150 Identities=15% Similarity=0.108 Sum_probs=85.7
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCc------------cCCHHHH---HHHHh-cCCe-EEEeC
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFL------------CRQTDLL---VAAAK-TGKI-INIKK 137 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~------------~~n~~lL---~~~a~-~~~P-Vilst 137 (290)
+..|++..++-...++-++||..++..+++ .+|++.+|+.. ++-.+++ +.+.+ ++.| |+.-.
T Consensus 4 ~~~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~ 83 (264)
T PRK00311 4 ISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADM 83 (264)
T ss_pred HHHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeC
Confidence 345666655556777889999999999988 69999888442 1222333 33333 4555 66666
Q ss_pred CCC---CCHHH-HHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEE----EeCCCCCCCCCCCccC
Q 022892 138 GQF---CASSV-MVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV----ADVTHSLQQPAGKKLD 209 (290)
Q Consensus 138 G~~---~tl~e-~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~----~D~sHs~~~~~~~~~~ 209 (290)
+.. .++++ +.+++..+++.|- .-+=+|-+. + -...|..+.+.++||+ +.+-+.+...|.
T Consensus 84 pfg~y~~~~~~av~~a~r~~~~aGa-~aVkiEdg~------~--~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~---- 150 (264)
T PRK00311 84 PFGSYQASPEQALRNAGRLMKEAGA-HAVKLEGGE------E--VAETIKRLVERGIPVMGHLGLTPQSVNVLGGY---- 150 (264)
T ss_pred CCCCccCCHHHHHHHHHHHHHHhCC-eEEEEcCcH------H--HHHHHHHHHHCCCCEeeeecccceeecccCCe----
Confidence 522 24566 6777887776775 344445431 1 1234555656789985 333332211111
Q ss_pred CCCccCCCCcc----cHHHHHHHHHHcCCCEEEEeee
Q 022892 210 GGGVASGGLRE----LIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 210 ~~~~~~~g~~~----~~~~~a~aAva~GA~G~~IEkH 242 (290)
..-|+.+ .+..-+++-..+||+++++|-=
T Consensus 151 ----~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v 183 (264)
T PRK00311 151 ----KVQGRDEEAAEKLLEDAKALEEAGAFALVLECV 183 (264)
T ss_pred ----eeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 0112111 1223344445789999999954
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=91.25 E-value=18 Score=36.91 Aligned_cols=100 Identities=11% Similarity=0.047 Sum_probs=66.3
Q ss_pred HHHHHHHhcCCeEEEeC--CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cC----CCEE
Q 022892 121 DLLVAAAKTGKIINIKK--GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN----CPVV 193 (290)
Q Consensus 121 ~lL~~~a~~~~PVilst--G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~----~pV~ 193 (290)
+.++++...+.-|.++- +.-.+++.+...++.+...|-..|.||..... -.|.. + .+-+..+++ +. +|++
T Consensus 124 ~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~-~~P~~-~-~~~i~~l~~~~~~~~~v~l~ 200 (513)
T PRK00915 124 EAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGY-TTPEE-F-GELIKTLRERVPNIDKAIIS 200 (513)
T ss_pred HHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCC-CCHHH-H-HHHHHHHHHhCCCcccceEE
Confidence 44556666788888776 44447888888888888889877777776553 12321 1 145566766 54 7898
Q ss_pred EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 194 ~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+ +.|-. ..+...-+.+|+.+||+ .|+.-+.
T Consensus 201 ~-H~HND------------------~GlAvANslaAv~aGa~--~Vd~Tv~ 230 (513)
T PRK00915 201 V-HCHND------------------LGLAVANSLAAVEAGAR--QVECTIN 230 (513)
T ss_pred E-EecCC------------------CCHHHHHHHHHHHhCCC--EEEEEee
Confidence 8 77752 22334557789999998 7776554
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.21 E-value=2.3 Score=40.08 Aligned_cols=104 Identities=15% Similarity=0.076 Sum_probs=0.0
Q ss_pred ecccCCccCCHH----HHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHH
Q 022892 110 IQIPAFLCRQTD----LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWM 185 (290)
Q Consensus 110 ~kIgs~~~~n~~----lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~l 185 (290)
|.||++++.|.+ +++++-..+.||||..... +.. |.... -...+..+
T Consensus 13 yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~-~~~---------------------------~~~~~-~~~~~~~~ 63 (283)
T PRK08185 13 FAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPN-ELD---------------------------FLGDN-FFAYVRER 63 (283)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcc-hhh---------------------------hccHH-HHHHHHHH
Q ss_pred Hh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe-eeCCCCCCCCCCCCCCChHHHHH
Q 022892 186 RE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME-VHDDPLNAPVDGPTQWPLRNLEE 263 (290)
Q Consensus 186 k~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE-kH~t~dka~~D~~~sl~p~~l~~ 263 (290)
.+ ..+||.+--||+. . ......|+..|.+.+|+- ||. +.+|.-+
T Consensus 64 a~~~~vPV~lHLDHg~----------------~-----~e~i~~ai~~Gf~SVM~D~S~l-------------~~eeNi~ 109 (283)
T PRK08185 64 AKRSPVPFVIHLDHGA----------------T-----IEDVMRAIRCGFTSVMIDGSLL-------------PYEENVA 109 (283)
T ss_pred HHHCCCCEEEECCCCC----------------C-----HHHHHHHHHcCCCEEEEeCCCC-------------CHHHHHH
Q ss_pred HHHHHHHHHHHhC
Q 022892 264 LLEELVAIAKVSK 276 (290)
Q Consensus 264 lv~~ir~~~~~lg 276 (290)
+.+.+.++-...|
T Consensus 110 ~t~~vv~~a~~~g 122 (283)
T PRK08185 110 LTKEVVELAHKVG 122 (283)
T ss_pred HHHHHHHHHHHcC
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.84 E-value=13 Score=33.96 Aligned_cols=185 Identities=15% Similarity=0.059 Sum_probs=111.0
Q ss_pred hHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHH-HHH
Q 022892 6 ALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEK-VKI 84 (290)
Q Consensus 6 ~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~-~~~ 84 (290)
.++..+. ..+++-|.- .++.+...++++.|++ .|+.++-.. | +..+-.+.++.|++ +.+
T Consensus 7 ~~~~~l~-~~~vi~Vvr---~~~~~~a~~~~~al~~----gGi~~iEiT-~-----------~tp~a~~~i~~l~~~~~~ 66 (222)
T PRK07114 7 AVLTAMK-ATGMVPVFY---HADVEVAKKVIKACYD----GGARVFEFT-N-----------RGDFAHEVFAELVKYAAK 66 (222)
T ss_pred HHHHHHH-hCCEEEEEE---cCCHHHHHHHHHHHHH----CCCCEEEEe-C-----------CCCcHHHHHHHHHHHHHh
Confidence 4555554 344443322 2366788888888887 588876442 1 11111355666653 334
Q ss_pred hcC-CcEEE-eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 85 AYD-IPIVT-DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 85 ~~G-i~~~s-~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
++. +.+-+ |+.++++++...+ ..+|+-=+. .|.++++.+-+.+.|++ =|.. |+.|+..|.+ .|.+-+
T Consensus 67 ~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~---~~~~v~~~~~~~~i~~i--PG~~-TpsEi~~A~~----~Ga~~v 136 (222)
T PRK07114 67 ELPGMILGVGSIVDAATAALYIQLGANFIVTPL---FNPDIAKVCNRRKVPYS--PGCG-SLSEIGYAEE----LGCEIV 136 (222)
T ss_pred hCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC---CCHHHHHHHHHcCCCEe--CCCC-CHHHHHHHHH----CCCCEE
Confidence 443 44444 9999999998877 677776664 68899999988898876 4666 9999999865 566444
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
=| ||.....+..+..|+. | +++++ ++=++ ... ..-...-.++|+.++-+
T Consensus 137 Kl--------FPA~~~G~~~ikal~~p~p~i~~~--ptGGV-------------~~~------~~n~~~yl~aGa~avg~ 187 (222)
T PRK07114 137 KL--------FPGSVYGPGFVKAIKGPMPWTKIM--PTGGV-------------EPT------EENLKKWFGAGVTCVGM 187 (222)
T ss_pred EE--------CcccccCHHHHHHHhccCCCCeEE--eCCCC-------------Ccc------hhcHHHHHhCCCEEEEE
Confidence 44 3433344556666666 4 45554 33222 110 00122335578887777
Q ss_pred eeeCCCCCCC
Q 022892 240 EVHDDPLNAP 249 (290)
Q Consensus 240 EkH~t~dka~ 249 (290)
=+-+.+.+..
T Consensus 188 Gs~L~~~~~~ 197 (222)
T PRK07114 188 GSKLIPKEAL 197 (222)
T ss_pred ChhhcCcccc
Confidence 7777665443
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=12 Score=33.62 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEE-eecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVT-DVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s-~~~d~~~~~~l~~ 105 (290)
+.+..++.++.|++ .|+.++-.. |+ + ...++.++++.++++ +.+-+ |+.++++++...+
T Consensus 14 ~~~~a~~ia~al~~----gGi~~iEit-~~-----t---------p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~ 74 (201)
T PRK06015 14 DVEHAVPLARALAA----GGLPAIEIT-LR-----T---------PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAK 74 (201)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEEe-CC-----C---------ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHH
Confidence 66788888888888 588876442 11 1 234455555555544 44444 9999999998877
Q ss_pred -hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC-chhHH
Q 022892 106 -VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD-PRNLE 183 (290)
Q Consensus 106 -~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d-L~~i~ 183 (290)
..+|+-=+. .|.++++.+-+.++|++ -|.+ |+.|+..|.+ .|-+-+=+ ||...+. ..-+.
T Consensus 75 aGA~FivSP~---~~~~vi~~a~~~~i~~i--PG~~-TptEi~~A~~----~Ga~~vK~--------FPa~~~GG~~yik 136 (201)
T PRK06015 75 AGSRFIVSPG---TTQELLAAANDSDVPLL--PGAA-TPSEVMALRE----EGYTVLKF--------FPAEQAGGAAFLK 136 (201)
T ss_pred cCCCEEECCC---CCHHHHHHHHHcCCCEe--CCCC-CHHHHHHHHH----CCCCEEEE--------CCchhhCCHHHHH
Confidence 688776664 68899999888898876 4766 9999999865 56644444 4443342 45677
Q ss_pred HHHh-c-CCCEE
Q 022892 184 WMRE-A-NCPVV 193 (290)
Q Consensus 184 ~lk~-~-~~pV~ 193 (290)
.|+. + ++|++
T Consensus 137 al~~plp~~~l~ 148 (201)
T PRK06015 137 ALSSPLAGTFFC 148 (201)
T ss_pred HHHhhCCCCcEE
Confidence 7777 4 56664
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=90.66 E-value=4.6 Score=39.74 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHhc-CCcEEEeecCc---ccHHH----Hhh-hcceecc--cC------Cc-----cCCHHHHHHH---
Q 022892 72 MVEGLKILEKVKIAY-DIPIVTDVHET---VQCEE----VGK-VADIIQI--PA------FL-----CRQTDLLVAA--- 126 (290)
Q Consensus 72 ~~~~l~~L~~~~~~~-Gi~~~s~~~d~---~~~~~----l~~-~~d~~kI--gs------~~-----~~n~~lL~~~--- 126 (290)
++..++++.++.+++ .+|++.+++.. ++... +++ .+|++-+ +. +. .++.++++++
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~ 176 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGW 176 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHH
Confidence 455677777776777 68999999653 32222 223 2566653 11 11 2566666443
Q ss_pred -Hh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 127 -AK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 127 -a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
-+ +.+||++|-+.. +.++.+.++.+.+.|-+-|+++.+..
T Consensus 177 Vk~~~~iPv~vKLsPn--~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 177 INAKATVPVWAKMTPN--ITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred HHHhhcCceEEEeCCC--hhhHHHHHHHHHHhCCCEEEEecccC
Confidence 32 579999999965 66788888888888887777777653
|
|
| >PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2 | Back alignment and domain information |
|---|
Probab=90.52 E-value=1 Score=44.72 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=48.8
Q ss_pred ceecccCCccC-CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEeecCCCCCCCCCCCchhHHHH
Q 022892 108 DIIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN-PNVMVCERGTMFGYNDLIVDPRNLEWM 185 (290)
Q Consensus 108 d~~kIgs~~~~-n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn-~~i~L~~~gs~~~y~~~~~dL~~i~~l 185 (290)
.+++||-|+-+ +-..++.+++..=||.+|-|.+++++|+..-++.+--... .++.|+-|=. ... +. ..+|.|
T Consensus 259 H~~WIGeRTRq~dgAHve~~~gi~NPigvKvGP~~~~~~l~~l~~~LnP~~~pGRltlI~RmG---a~~--v~-~~LP~l 332 (439)
T PF01474_consen 259 HFLWIGERTRQLDGAHVEFLRGIANPIGVKVGPSMTPEELVELCDRLNPDNEPGRLTLITRMG---ADK--VR-ERLPPL 332 (439)
T ss_dssp SEEEE-TTT--TTSHHHHHHHHB-S-EEEEE-TT--HHHHHHHHHHHSTT--TTSEEEEE------TTT--HH-HHHHHH
T ss_pred ceeeecccccCCchhHHHHHhhccCccceeeCCCCCHHHHHHHHHHhCCCCCCCeEEEEecCC---cHH--HH-HHhHHH
Confidence 37899988653 3355677888888999999999999999999988732111 2599988833 222 22 233333
Q ss_pred ----HhcCCCEEE--eCCCCC
Q 022892 186 ----REANCPVVA--DVTHSL 200 (290)
Q Consensus 186 ----k~~~~pV~~--D~sHs~ 200 (290)
++.|.||++ |+=|+|
T Consensus 333 i~aV~~~g~~vvW~cDPMHGN 353 (439)
T PF01474_consen 333 IEAVQAAGHPVVWSCDPMHGN 353 (439)
T ss_dssp HHHHHTTT---EEEE-TSTTS
T ss_pred HHHHHHCCCceEEeccCCCCC
Confidence 447888877 777986
|
5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A. |
| >COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.51 E-value=1.7 Score=41.08 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=58.5
Q ss_pred eecccCCccCCHHHH----HHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCc-hhHH
Q 022892 109 IIQIPAFLCRQTDLL----VAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP-RNLE 183 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL----~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL-~~i~ 183 (290)
=|.||+++++|.+.+ +++...+-||||..... +++++- | |. ++ ..+.
T Consensus 17 ~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g--------~~~y~g--g--------------~~----~~~~~v~ 68 (286)
T COG0191 17 GYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEG--------AAKYAG--G--------------AD----SLAHMVK 68 (286)
T ss_pred CCceeeeeecCHHHHHHHHHHHHHhCCCEEEEeccc--------HHHHhc--h--------------HH----HHHHHHH
Confidence 478999999998755 45667889999988876 223221 1 11 11 2333
Q ss_pred HHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe-eeC
Q 022892 184 WMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME-VHD 243 (290)
Q Consensus 184 ~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE-kH~ 243 (290)
.+.+ +++||.+--||+. . ......|+..|-.-+||. +|+
T Consensus 69 ~~a~~~~vPV~lHlDHg~----------------~-----~~~~~~ai~~GFsSvMiDgS~~ 109 (286)
T COG0191 69 ALAEKYGVPVALHLDHGA----------------S-----FEDCKQAIRAGFSSVMIDGSHL 109 (286)
T ss_pred HHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHhcCCceEEecCCcC
Confidence 4444 7899999888983 3 566778899998888876 554
|
|
| >TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II | Back alignment and domain information |
|---|
Probab=90.45 E-value=1 Score=44.84 Aligned_cols=91 Identities=16% Similarity=0.082 Sum_probs=61.9
Q ss_pred cceecccCCccC-CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEeecCCCCCCC-CCCCchhHH
Q 022892 107 ADIIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN-PNVMVCERGTMFGYND-LIVDPRNLE 183 (290)
Q Consensus 107 ~d~~kIgs~~~~-n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn-~~i~L~~~gs~~~y~~-~~~dL~~i~ 183 (290)
..|++||-|+-+ +-..++.+.+..=||.+|-|..++++|+.+-++.+--..- -++.|+-|=. ... .+.=..-|.
T Consensus 255 aH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~~l~~L~~~LnP~~epGRlTLI~RmG---a~kV~~~LP~li~ 331 (443)
T TIGR01358 255 AHMLWIGERTRQLDGAHVEFLRGVRNPIGIKVGPSMTPDELLRLIERLNPENEPGRLTLISRMG---ADKIADKLPPLLR 331 (443)
T ss_pred ccccccccccCCCCchHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEeccC---chHHHHhHHHHHH
Confidence 457889988764 4455677778888999999999999999999988732211 1588988843 221 011112334
Q ss_pred HHHhcCCCEEE--eCCCCC
Q 022892 184 WMREANCPVVA--DVTHSL 200 (290)
Q Consensus 184 ~lk~~~~pV~~--D~sHs~ 200 (290)
..++.|.||++ |+=|+|
T Consensus 332 aV~~~G~~VvW~cDPMHGN 350 (443)
T TIGR01358 332 AVKAAGRRVVWVCDPMHGN 350 (443)
T ss_pred HHHHcCCceEEeecCCCCC
Confidence 44557889987 666987
|
Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog. |
| >PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.91 Score=45.48 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=61.9
Q ss_pred cceecccCCccC-CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEeecCCCCCCC-CCCCchhHH
Q 022892 107 ADIIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN-PNVMVCERGTMFGYND-LIVDPRNLE 183 (290)
Q Consensus 107 ~d~~kIgs~~~~-n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn-~~i~L~~~gs~~~y~~-~~~dL~~i~ 183 (290)
..|++||-|+-+ +-..++.+.+..=||.+|-|.+++++|+..-++.+--..- -++.|+-|=. ... .+.=..-|.
T Consensus 275 aH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGPs~~pdel~~L~~~LnP~~epGRlTLI~RmG---a~kV~~~LP~Li~ 351 (474)
T PLN02291 275 AHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVRMG---AEKLRVKLPHLIR 351 (474)
T ss_pred ccccccccccCCCCccHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEeccc---hHHHHHHHHHHHH
Confidence 457889988764 4455677788888999999999999999999988732211 2588888843 221 011112334
Q ss_pred HHHhcCCCEEE--eCCCCC
Q 022892 184 WMREANCPVVA--DVTHSL 200 (290)
Q Consensus 184 ~lk~~~~pV~~--D~sHs~ 200 (290)
..++.|.||++ |+=|+|
T Consensus 352 aV~~~G~~VvW~cDPMHGN 370 (474)
T PLN02291 352 AVRRAGQIVTWVSDPMHGN 370 (474)
T ss_pred HHHHcCCceEEeecCCCCC
Confidence 44557889987 666987
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=4 Score=41.61 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=72.6
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------CCCC-CCCC--chhHHHHHhcCCC-EEEeCCCCCC
Q 022892 132 IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF------GYND-LIVD--PRNLEWMREANCP-VVADVTHSLQ 201 (290)
Q Consensus 132 PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~------~y~~-~~~d--L~~i~~lk~~~~p-V~~D~sHs~~ 201 (290)
|.+..-+.. ..++++.|++.+...|.+.+++.-..|.. +-.. +.++ ...+...|+.|+. |.|.+-.+-
T Consensus 157 ~~i~a~~R~-~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~- 234 (503)
T PLN03228 157 PVICGIARC-KKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGG- 234 (503)
T ss_pred eEEeeeccc-CHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecccccc-
Confidence 566655666 77899999998776677778777655521 1111 1111 1233344545664 666442220
Q ss_pred CCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 202 QPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
.-..+++..++.++..+||+.+ . ++|.--.+.|.++.++++.+++-
T Consensus 235 --------------Rtd~efl~~~~~~a~~~Gad~I----~------l~DTvG~~tP~~v~~lV~~l~~~ 280 (503)
T PLN03228 235 --------------RSDKEFLCKILGEAIKAGATSV----G------IADTVGINMPHEFGELVTYVKAN 280 (503)
T ss_pred --------------ccCHHHHHHHHHHHHhcCCCEE----E------EecCCCCCCHHHHHHHHHHHHHH
Confidence 0124667778888899999832 2 27999999999999999998863
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=90.22 E-value=5.2 Score=38.19 Aligned_cols=94 Identities=14% Similarity=0.125 Sum_probs=57.5
Q ss_pred hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC-CCCC-----chhHHHHHh-cCCCEEEeCCCCC
Q 022892 128 KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND-LIVD-----PRNLEWMRE-ANCPVVADVTHSL 200 (290)
Q Consensus 128 ~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~-~~~d-----L~~i~~lk~-~~~pV~~D~sHs~ 200 (290)
..+.||+++-.-. +.+||.++++.+...|- +.+=+++++-..-+. ...+ ...+..+++ .++||.+=-+
T Consensus 97 ~~~~pvi~si~g~-~~~~~~~~a~~~~~~ga-d~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~--- 171 (325)
T cd04739 97 AVSIPVIASLNGV-SAGGWVDYARQIEEAGA-DALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLS--- 171 (325)
T ss_pred ccCCeEEEEeCCC-CHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcC---
Confidence 3478999998666 89999999999988774 445555543100000 0011 134555666 6889987211
Q ss_pred CCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 201 QQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
..-..+..++.++...||+|+++--+
T Consensus 172 ----------------p~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 172 ----------------PFFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred ----------------CCccCHHHHHHHHHHcCCCeEEEEcC
Confidence 00112356788888999999876443
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=90.14 E-value=6.3 Score=36.41 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=41.1
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIV 91 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~ 91 (290)
++++-||+|.+.. |.+..+++|+.. +++|+++|+... |+.|. ..-++-+...+++++..++|++
T Consensus 67 ~~~~~vi~gv~~~-~~~~~~~~a~~a----~~~G~d~v~~~~--------P~~~~-~~~~~l~~~~~~ia~~~~~pi~ 130 (284)
T cd00950 67 NGRVPVIAGTGSN-NTAEAIELTKRA----EKAGADAALVVT--------PYYNK-PSQEGLYAHFKAIAEATDLPVI 130 (284)
T ss_pred CCCCcEEeccCCc-cHHHHHHHHHHH----HHcCCCEEEEcc--------cccCC-CCHHHHHHHHHHHHhcCCCCEE
Confidence 3567889998862 555555555555 447999887641 22122 2213556678888888899988
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=90.07 E-value=1.7 Score=39.82 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=41.9
Q ss_pred cCCCEEEeCCCCCCCCCCCccCCCCccCCCC-cccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHH
Q 022892 188 ANCPVVADVTHSLQQPAGKKLDGGGVASGGL-RELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLE 266 (290)
Q Consensus 188 ~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~-~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~ 266 (290)
.++||++|.+.+- |. ..-+....+.-..+|+.|+.||-. |--.+++.-+ ..+++++
T Consensus 68 ~~iPv~vD~d~Gy----------------G~~~~~v~~tv~~~~~aG~agi~IEDq----~~~~~~~~l~---~~ee~~~ 124 (238)
T PF13714_consen 68 VSIPVIVDADTGY----------------GNDPENVARTVRELERAGAAGINIEDQ----RCGHGGKQLV---SPEEMVA 124 (238)
T ss_dssp SSSEEEEE-TTTS----------------SSSHHHHHHHHHHHHHCT-SEEEEESB----STTTSTT-B-----HHHHHH
T ss_pred hcCcEEEEccccc----------------CchhHHHHHHHHHHHHcCCcEEEeecc----ccCCCCCcee---CHHHHHH
Confidence 4689999999874 43 444555666678899999999977 1001333333 4566777
Q ss_pred HHHHHHHHhCC
Q 022892 267 ELVAIAKVSKG 277 (290)
Q Consensus 267 ~ir~~~~~lg~ 277 (290)
.||.+.++..+
T Consensus 125 kI~Aa~~a~~~ 135 (238)
T PF13714_consen 125 KIRAAVDARRD 135 (238)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHhccC
Confidence 77777777655
|
... |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.05 E-value=24 Score=35.99 Aligned_cols=182 Identities=15% Similarity=0.135 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEecc---ccccCCCCCcccCCCCChhHHHHHHHHH---HHhcCCcEEEe--------
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKS---SFDKANRTSSKSFRGPGMVEGLKILEKV---KIAYDIPIVTD-------- 93 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~---~~~k~~rts~~~~~g~~~~~~l~~L~~~---~~~~Gi~~~s~-------- 93 (290)
+.++.+..|+.|-+ +|++.+=.. +|+. .++-++ ++.|+.|+.+ ..+..+-.+..
T Consensus 25 ~t~d~l~ia~~ld~----~G~~siE~~GGatfd~-------~~rfl~-Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~ 92 (499)
T PRK12330 25 AMEDMVGACEDIDN----AGYWSVECWGGATFDA-------CIRFLN-EDPWERLRTFRKLMPNSRLQMLLRGQNLLGYR 92 (499)
T ss_pred CHHHHHHHHHHHHh----cCCCEEEecCCcchhh-------hhcccC-CCHHHHHHHHHHhCCCCeEEEEEcccccCCcc
Confidence 56778888888887 598775432 1221 111112 3334444333 33333333332
Q ss_pred ecC----cccHHHHhh-hcceecccCC--ccCCHH-HHHHHHhcCCeE----EEeCCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 94 VHE----TVQCEEVGK-VADIIQIPAF--LCRQTD-LLVAAAKTGKII----NIKKGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 94 ~~d----~~~~~~l~~-~~d~~kIgs~--~~~n~~-lL~~~a~~~~PV----ilstG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
.+. ...++...+ .+|++-|.-. ++.|.. .++.+-+.|+-+ -...+.-.|++.+.+.++.+...|.+.|
T Consensus 93 ~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I 172 (499)
T PRK12330 93 HYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSI 172 (499)
T ss_pred CcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 000 112333333 4777665543 334443 234444556533 2222444599999999999999999888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
.|..-...- .|. .+ ..-+..+|+ + ++||.+ +.|.. .| +...-..+|+.+||+ +
T Consensus 173 ~IkDtaGll-~P~-~~-~~LV~~Lk~~~~~~ipI~~-H~Hnt---------------~G---lA~An~laAieAGad--~ 228 (499)
T PRK12330 173 CIKDMAALL-KPQ-PA-YDIVKGIKEACGEDTRINL-HCHST---------------TG---VTLVSLMKAIEAGVD--V 228 (499)
T ss_pred EeCCCccCC-CHH-HH-HHHHHHHHHhCCCCCeEEE-EeCCC---------------CC---cHHHHHHHHHHcCCC--E
Confidence 887765531 111 11 245667777 6 699999 88874 13 224557789999998 7
Q ss_pred EeeeCCC
Q 022892 239 MEVHDDP 245 (290)
Q Consensus 239 IEkH~t~ 245 (290)
|+.-..+
T Consensus 229 vDtai~G 235 (499)
T PRK12330 229 VDTAISS 235 (499)
T ss_pred EEeeccc
Confidence 8876653
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=90.04 E-value=7.4 Score=40.35 Aligned_cols=210 Identities=15% Similarity=0.131 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEecc---ccccCCCCCcccCCCCChhHHHHHHHHHHH-hcCCcEEEe--ec------
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKS---SFDKANRTSSKSFRGPGMVEGLKILEKVKI-AYDIPIVTD--VH------ 95 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~---~~~k~~rts~~~~~g~~~~~~l~~L~~~~~-~~Gi~~~s~--~~------ 95 (290)
+.+..+++|..|.+ +|++.+=.. +|+. .++|-+ ++.++.++++.+ -.+.++.+= .-
T Consensus 19 ~t~dkl~ia~~L~~----~Gv~~IE~~GGatfd~-----~~~f~~---e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~ 86 (582)
T TIGR01108 19 RTEDMLPIAEKLDD----VGYWSLEVWGGATFDA-----CIRFLN---EDPWERLRELKKALPNTPLQMLLRGQNLLGYR 86 (582)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEecCCccccc-----ccccCC---CCHHHHHHHHHHhCCCCEEEEEEccccccccc
Confidence 55677888888887 498765442 2221 012221 334555555543 223444332 21
Q ss_pred -Ccc-----cHHHHhh-hcceecccCC--ccCCHH-HHHHHHhcCCeEEEe----CCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 96 -ETV-----QCEEVGK-VADIIQIPAF--LCRQTD-LLVAAAKTGKIINIK----KGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 96 -d~~-----~~~~l~~-~~d~~kIgs~--~~~n~~-lL~~~a~~~~PVils----tG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
.++ .++...+ .+|++.|.-. +..|.. .++.+-+.|+-|-.. .....+++.+.+.++.+...|.+.|
T Consensus 87 ~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I 166 (582)
T TIGR01108 87 HYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSI 166 (582)
T ss_pred cCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 111 2344344 5777666532 334443 334455667766643 1122378999999999999998888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
.|+.-.... .|. .+ ..-+..+|+ +++||++ +.|.. .| +...-+.+|+.+||+ +|+
T Consensus 167 ~i~Dt~G~~-~P~-~v-~~lv~~lk~~~~~pi~~-H~Hnt---------------~G---la~An~laAveaGa~--~vd 222 (582)
T TIGR01108 167 CIKDMAGIL-TPK-AA-YELVSALKKRFGLPVHL-HSHAT---------------TG---MAEMALLKAIEAGAD--GID 222 (582)
T ss_pred EECCCCCCc-CHH-HH-HHHHHHHHHhCCCceEE-EecCC---------------CC---cHHHHHHHHHHhCCC--EEE
Confidence 777766531 121 12 245666777 7899999 88874 12 224557789999998 777
Q ss_pred eeCCCCCC-------------C--CCCCCCCChHHHHHHHHHHHHHHH
Q 022892 241 VHDDPLNA-------------P--VDGPTQWPLRNLEELLEELVAIAK 273 (290)
Q Consensus 241 kH~t~dka-------------~--~D~~~sl~p~~l~~lv~~ir~~~~ 273 (290)
.-+..=-. + ......++++.|.++-+.++++.+
T Consensus 223 ~ai~GlG~~tGn~~le~vv~~L~~~g~~tgid~~~L~~l~~~~~~v~~ 270 (582)
T TIGR01108 223 TAISSMSGGTSHPPTETMVAALRGTGYDTGLDIELLLEIAAYFREVRK 270 (582)
T ss_pred eccccccccccChhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHH
Confidence 65543110 0 122334677766666555555544
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=89.99 E-value=8 Score=37.19 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=31.1
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 022892 131 KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 131 ~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
+||++|-+...+.+++...++.+...|-+-|++..+.
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 8999999998787788888888888888778887754
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=89.97 E-value=2.2 Score=39.95 Aligned_cols=92 Identities=11% Similarity=-0.042 Sum_probs=54.9
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
++++-||+|.++ +.+.+++.|+.. +++|+|+++.. .|+ |....-++-+++.+++++..++|++-=
T Consensus 72 ~g~~pvi~gv~~--~t~~ai~~a~~a----~~~Gadav~~~--------pP~-y~~~s~~~i~~~f~~v~~a~~~pvilY 136 (296)
T TIGR03249 72 KGKVPVYTGVGG--NTSDAIEIARLA----EKAGADGYLLL--------PPY-LINGEQEGLYAHVEAVCESTDLGVIVY 136 (296)
T ss_pred CCCCcEEEecCc--cHHHHHHHHHHH----HHhCCCEEEEC--------CCC-CCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 467789999885 666666666655 45699997653 122 222221344667888888888997731
Q ss_pred -----ecCcccHHHHhh---hcceecccCCccCCH
Q 022892 94 -----VHETVQCEEVGK---VADIIQIPAFLCRQT 120 (290)
Q Consensus 94 -----~~d~~~~~~l~~---~~d~~kIgs~~~~n~ 120 (290)
.++++.+..|.+ .+-.+|-++.++.++
T Consensus 137 n~~g~~l~~~~~~~La~~~~nvvgiKds~~d~~~~ 171 (296)
T TIGR03249 137 QRDNAVLNADTLERLADRCPNLVGFKDGIGDMEQM 171 (296)
T ss_pred eCCCCCCCHHHHHHHHhhCCCEEEEEeCCCCHHHH
Confidence 334444444443 245566666655544
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=89.94 E-value=2.1 Score=39.80 Aligned_cols=111 Identities=12% Similarity=0.050 Sum_probs=63.2
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT- 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s- 92 (290)
++++-||+|.+.. |.+..+++|++. +++|+|+|+.. .|+.| .+.-++-+...++++++.++|++-
T Consensus 65 ~~~~~vi~gv~~~-s~~~~i~~a~~a----~~~Gad~v~v~--------pP~y~-~~~~~~i~~~~~~i~~~~~~pi~lY 130 (285)
T TIGR00674 65 NGRVPVIAGTGSN-ATEEAISLTKFA----EDVGADGFLVV--------TPYYN-KPTQEGLYQHFKAIAEEVDLPIILY 130 (285)
T ss_pred CCCCeEEEeCCCc-cHHHHHHHHHHH----HHcCCCEEEEc--------CCcCC-CCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 4567899998863 555556555554 55799998763 12222 222134567788889888999873
Q ss_pred -------eecCcccHHHHhhh--cceecccCCccCCHHHHHHHHhcCCeEEEeCCCC
Q 022892 93 -------DVHETVQCEEVGKV--ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF 140 (290)
Q Consensus 93 -------~~~d~~~~~~l~~~--~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~ 140 (290)
..++++.+..|.+. +-.+|-++.++.++.-+. ...+..+.+-+|..
T Consensus 131 n~P~~tg~~l~~~~l~~L~~~~~v~giK~s~~d~~~~~~l~--~~~~~~~~v~~G~d 185 (285)
T TIGR00674 131 NVPSRTGVSLYPETVKRLAEEPNIVAIKEATGNLERISEIK--AIAPDDFVVLSGDD 185 (285)
T ss_pred ECcHHhcCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH--HhcCCCeEEEECch
Confidence 12333444444432 445566666655443332 33343566666644
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=89.92 E-value=7.5 Score=34.75 Aligned_cols=114 Identities=19% Similarity=0.140 Sum_probs=63.7
Q ss_pred HHHHhh-hcceecccCCcc----CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 100 CEEVGK-VADIIQIPAFLC----RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 100 ~~~l~~-~~d~~kIgs~~~----~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
++.+.+ .+|++.+-+-.= +=.+|++++-... +++--.-+ |++|.++|.+ .|-+-|.=..+|.. +|..
T Consensus 57 v~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADis-t~ee~~~A~~----~G~D~I~TTLsGYT-~~t~ 128 (192)
T PF04131_consen 57 VDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMADIS-TLEEAINAAE----LGFDIIGTTLSGYT-PYTK 128 (192)
T ss_dssp HHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-S-SHHHHHHHHH----TT-SEEE-TTTTSS-TTST
T ss_pred HHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecC-CHHHHHHHHH----cCCCEEEcccccCC-CCCC
Confidence 334444 577776654322 2235777776666 44444445 8999988865 56544433333322 1211
Q ss_pred -CCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 175 -LIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 175 -~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..-|+.-+..|.+.++||+....-. -+..+..|..+||+.+++=+-+
T Consensus 129 ~~~pD~~lv~~l~~~~~pvIaEGri~----------------------tpe~a~~al~~GA~aVVVGsAI 176 (192)
T PF04131_consen 129 GDGPDFELVRELVQADVPVIAEGRIH----------------------TPEQAAKALELGAHAVVVGSAI 176 (192)
T ss_dssp TSSHHHHHHHHHHHTTSEEEEESS------------------------SHHHHHHHHHTT-SEEEE-HHH
T ss_pred CCCCCHHHHHHHHhCCCcEeecCCCC----------------------CHHHHHHHHhcCCeEEEECccc
Confidence 3356666667766688998743211 1778889999999999887654
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=89.90 E-value=3.2 Score=39.62 Aligned_cols=104 Identities=10% Similarity=-0.037 Sum_probs=62.9
Q ss_pred CCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec----------CcccHHHH----hh-hcceecc
Q 022892 48 LPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH----------ETVQCEEV----GK-VADIIQI 112 (290)
Q Consensus 48 ~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~----------d~~~~~~l----~~-~~d~~kI 112 (290)
+++|....|.- +.+ . ...-+.+..+.+.|+++|+|++..++ +++-+-++ .+ .+|++|+
T Consensus 135 AdAV~v~v~~G----s~~--E-~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv 207 (304)
T PRK06852 135 ILGVGYTIYLG----SEY--E-SEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKV 207 (304)
T ss_pred ceEEEEEEecC----CHH--H-HHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEe
Confidence 88888776651 100 0 00123455677888999999996332 22222222 23 4899999
Q ss_pred cCCcc---CCHHHH-HHHHhc-CCeEEEeCCCCCCHHHHHHHHHHHHH-cCC
Q 022892 113 PAFLC---RQTDLL-VAAAKT-GKIINIKKGQFCASSVMVNSAEKVRL-AGN 158 (290)
Q Consensus 113 gs~~~---~n~~lL-~~~a~~-~~PVilstG~~~tl~e~~~Ave~i~~-~Gn 158 (290)
.--.- .+.+.+ +.++.. +.||++.=|...+.+|+++-++-... .|.
T Consensus 208 ~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa 259 (304)
T PRK06852 208 NYPKKEGANPAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGA 259 (304)
T ss_pred cCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 86421 222333 335556 78999999998777788887775545 565
|
|
| >TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit | Back alignment and domain information |
|---|
Probab=89.81 E-value=9.9 Score=37.48 Aligned_cols=185 Identities=23% Similarity=0.218 Sum_probs=108.5
Q ss_pred HHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe-----ecCcccHHHHhhhcce--ecccCCc
Q 022892 44 TKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD-----VHETVQCEEVGKVADI--IQIPAFL 116 (290)
Q Consensus 44 ~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~-----~~d~~~~~~l~~~~d~--~kIgs~~ 116 (290)
++.|+|.|....-.. .|....... ++-.+..+++++..++|++-. -.|++.++...+.+.= --|.|-+
T Consensus 150 ~~~~aD~Ialr~~S~----DP~~~d~~~-~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt 224 (389)
T TIGR00381 150 KEFGADMVTIHLIST----DPKLDDKSP-SEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASAN 224 (389)
T ss_pred HHhCCCEEEEEecCC----CccccccCH-HHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecC
Confidence 567999877653321 222121111 355667888889999999987 6688888877775432 4566666
Q ss_pred cC-CHHHHHHH-HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC--cEEEEeecCCC-CCCCCCCCchhHHHHH-----
Q 022892 117 CR-QTDLLVAA-AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNP--NVMVCERGTMF-GYNDLIVDPRNLEWMR----- 186 (290)
Q Consensus 117 ~~-n~~lL~~~-a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~--~i~L~~~gs~~-~y~~~~~dL~~i~~lk----- 186 (290)
.. |+.=+-++ -+.|.||++++... ++.......++...|-+ + +++..++.. +|..+ --+..+..+|
T Consensus 225 ~e~Ny~~ia~lAk~yg~~Vvv~s~~D--in~ak~Ln~kL~~~Gv~~eD-IVlDP~t~alG~Gie-ya~s~~erIRraALk 300 (389)
T TIGR00381 225 LDLDYEKIANAAKKYGHVVLSWTIMD--INMQKTLNRYLLKRGLMPRD-IVMDPTTCALGYGIE-FSITNMERIRLSGLK 300 (389)
T ss_pred chhhHHHHHHHHHHhCCeEEEEcCCc--HHHHHHHHHHHHHcCCCHHH-EEEcCCCccccCCHH-HHHHHHHHHHHHHhc
Confidence 66 87644444 45789999998654 88888888888888876 6 556777631 23221 0112222222
Q ss_pred h---cCCCEEEeCCCCCCCCCCCccCCCCc-cCCCCcc---cHHHH--HHHHHHcCCCEEEEeeeC
Q 022892 187 E---ANCPVVADVTHSLQQPAGKKLDGGGV-ASGGLRE---LIPCI--ARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 187 ~---~~~pV~~D~sHs~~~~~~~~~~~~~~-~~~g~~~---~~~~~--a~aAva~GA~G~~IEkH~ 243 (290)
. +++|++.+.+.++.- +|+... ..-|.++ .+.++ +.+....|++ +++=.|+
T Consensus 301 gD~~L~~Pii~~~~~~w~~-----kEa~~~~~~wG~~~~Rg~lwE~~ta~~~~~aG~d-i~~m~HP 360 (389)
T TIGR00381 301 GDTDLNMPMSSGTTNAWGA-----REAWMVDSEWGPREYRGPLWEIITGLTMMLAGVD-LFMMLHP 360 (389)
T ss_pred CCcCCCCCeeccchhhhhh-----eeeccCCCCCCChHHhchhhhHHHHHHHHHcCCc-EEEEeCH
Confidence 2 578987766444311 111100 0112222 22222 3333567999 8888996
|
This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=89.80 E-value=3.9 Score=38.76 Aligned_cols=174 Identities=18% Similarity=0.157 Sum_probs=86.5
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcceecccCCcc
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VADIIQIPAFLC 117 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~ 117 (290)
++|+++|++.|+.-.=-++.|...+ |.-.-.+.+.+++..+...||++. ..-+..+++.|.+ .+|++- .|.-.
T Consensus 31 ~iae~~g~~~v~~~~~~psd~~~~g---g~~Rm~~p~~I~aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiID-~Te~l 106 (293)
T PRK04180 31 KIAEEAGAVAVMALERVPADIRAAG---GVARMADPKMIEEIMDAVSIPVMAKARIGHFVEAQILEALGVDYID-ESEVL 106 (293)
T ss_pred HHHHHhChHHHHHccCCCchHhhcC---CeeecCCHHHHHHHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEEe-ccCCC
Confidence 5677789888876321111221111 111112344444555666777765 3333556666666 577773 22222
Q ss_pred CCH-HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH----HHHHcC-----------------CCcEEEEeecCC-C---C
Q 022892 118 RQT-DLLVAAAKTGKIINIKKGQFCASSVMVNSAE----KVRLAG-----------------NPNVMVCERGTM-F---G 171 (290)
Q Consensus 118 ~n~-~lL~~~a~~~~PVilstG~~~tl~e~~~Ave----~i~~~G-----------------n~~i~L~~~gs~-~---~ 171 (290)
+-. ++.... +...-+.|=.|.+ |++|.+++++ .|.++| |.+|- ..+|.+ + .
T Consensus 107 rpad~~~~~~-K~~f~~~fmad~~-~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~-~L~gyt~~~~~~ 183 (293)
T PRK04180 107 TPADEEYHID-KWDFTVPFVCGAR-NLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIR-RLTSMSEDELYT 183 (293)
T ss_pred CchHHHHHHH-HHHcCCCEEccCC-CHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHH-HHhCCCHHHHHh
Confidence 222 122222 2222344445666 7777766654 122110 00110 012211 0 0
Q ss_pred CC-CCCCCchhHHHHHh-cCCCEE--EeCC-CCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 172 YN-DLIVDPRNLEWMRE-ANCPVV--ADVT-HSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 172 y~-~~~~dL~~i~~lk~-~~~pV~--~D~s-Hs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+. ....++..+..+++ .++||+ .-.. |+ +.-+..+..+||+|+++=+-++
T Consensus 184 ~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~T-----------------------Pedaa~vme~GAdgVaVGSaI~ 238 (293)
T PRK04180 184 AAKELQAPYELVKEVAELGRLPVVNFAAGGIAT-----------------------PADAALMMQLGADGVFVGSGIF 238 (293)
T ss_pred hccccCCCHHHHHHHHHhCCCCEEEEEeCCCCC-----------------------HHHHHHHHHhCCCEEEEcHHhh
Confidence 11 12467788888888 789996 3111 12 4455566789999999988875
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.74 E-value=17 Score=36.52 Aligned_cols=182 Identities=16% Similarity=0.222 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEecc---ccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEE--EeecC-----
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKS---SFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIV--TDVHE----- 96 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~---~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~--s~~~d----- 96 (290)
+.+..+++|+.|.+ +|++.+=.. +|.. -.+|-+ ++.++.++.+.+. .+.++. ...-+
T Consensus 24 ~t~dkl~ia~~Ld~----~Gv~~IE~~ggatf~~-----~~~f~~---e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~ 91 (448)
T PRK12331 24 TTEEMLPILEKLDN----AGYHSLEMWGGATFDA-----CLRFLN---EDPWERLRKIRKAVKKTKLQMLLRGQNLLGYR 91 (448)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEecCCccchh-----hhccCC---CCHHHHHHHHHHhCCCCEEEEEeccccccccc
Confidence 45677888888877 498776431 1221 012222 3345555555444 344443 22111
Q ss_pred -------cccHHHHhh-hcceecccCC--ccCCHH-HHHHHHhcCCeEE--Ee--CCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 97 -------TVQCEEVGK-VADIIQIPAF--LCRQTD-LLVAAAKTGKIIN--IK--KGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 97 -------~~~~~~l~~-~~d~~kIgs~--~~~n~~-lL~~~a~~~~PVi--ls--tG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
...++...+ .+|++.|.-. +..|.. .++.+-+.|+-+. ++ .+...+++-+.+-++.+.+.|-+.|
T Consensus 92 ~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I 171 (448)
T PRK12331 92 NYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSI 171 (448)
T ss_pred cCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 122344444 5777766533 334543 4455556777643 22 2334478888888888888998888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
.|+.-...- .|.. + ..-+..+|+ +++||.+ +.|.. .| +...-+.+|+.+||+ +|+
T Consensus 172 ~i~Dt~G~l-~P~~-v-~~lv~alk~~~~~pi~~-H~Hnt---------------~G---lA~AN~laAieaGad--~vD 227 (448)
T PRK12331 172 CIKDMAGIL-TPYV-A-YELVKRIKEAVTVPLEV-HTHAT---------------SG---IAEMTYLKAIEAGAD--IID 227 (448)
T ss_pred EEcCCCCCC-CHHH-H-HHHHHHHHHhcCCeEEE-EecCC---------------CC---cHHHHHHHHHHcCCC--EEE
Confidence 887766531 2211 1 245667777 7899999 88864 12 235567789999998 788
Q ss_pred eeCCC
Q 022892 241 VHDDP 245 (290)
Q Consensus 241 kH~t~ 245 (290)
.-+.+
T Consensus 228 ~sv~g 232 (448)
T PRK12331 228 TAISP 232 (448)
T ss_pred eeccc
Confidence 76654
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=89.62 E-value=1.6 Score=39.58 Aligned_cols=171 Identities=23% Similarity=0.277 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
-.++|+.+.+ .|++-+...-.+.+ .. +-..-+..+++.+++.++|+.. =+.+.++++.+.+ .++
T Consensus 31 P~~~a~~~~~----~g~~~l~ivDLdaa-------~~--g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~ 97 (229)
T PF00977_consen 31 PVEVAKAFNE----QGADELHIVDLDAA-------KE--GRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGAD 97 (229)
T ss_dssp HHHHHHHHHH----TT-SEEEEEEHHHH-------CC--THHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-S
T ss_pred HHHHHHHHHH----cCCCEEEEEEccCc-------cc--CchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCC
Confidence 4678887754 58887776655521 01 1135578899999998888877 5778888888777 699
Q ss_pred eecccCCccCCHHHHHHHHhc-CC-eEEE----eCC--------CC---CCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT-GK-IINI----KKG--------QF---CASSVMVNSAEKVRLAGNPNVMVCERGTMFG 171 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~-~~-PVil----stG--------~~---~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~ 171 (290)
.+-||+...+|.++++++++. +. -|++ +.| .. .++.|+ ++.+.+.|-..+ |+.+..+-+
T Consensus 98 ~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~---~~~~~~~g~~~i-i~tdi~~dG 173 (229)
T PF00977_consen 98 RVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEF---AKRLEELGAGEI-ILTDIDRDG 173 (229)
T ss_dssp EEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHH---HHHHHHTT-SEE-EEEETTTTT
T ss_pred EEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHH---HHHHHhcCCcEE-EEeeccccC
Confidence 999999999999999887653 32 1222 233 22 234554 445666776665 555554322
Q ss_pred CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 172 YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
.- .=.|+..+..+++ +++||++- +|.+.. ..+. .+...|++|+++=+-
T Consensus 174 t~-~G~d~~~~~~l~~~~~~~vias--------------------GGv~~~-~Dl~-~l~~~G~~gvivg~a 222 (229)
T PF00977_consen 174 TM-QGPDLELLKQLAEAVNIPVIAS--------------------GGVRSL-EDLR-ELKKAGIDGVIVGSA 222 (229)
T ss_dssp TS-SS--HHHHHHHHHHHSSEEEEE--------------------SS--SH-HHHH-HHHHTTECEEEESHH
T ss_pred Cc-CCCCHHHHHHHHHHcCCCEEEe--------------------cCCCCH-HHHH-HHHHCCCcEEEEehH
Confidence 11 1246777888877 89999871 122111 2233 234889999887543
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=89.60 E-value=1.5 Score=40.76 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHh
Q 022892 74 EGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAK 128 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~ 128 (290)
..+++++++++..++|++. -+++++++..+.. .+|.++|++..+.+..+.+.+.+
T Consensus 218 ~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~ 275 (296)
T cd04740 218 IALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIE 275 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHH
Confidence 3577888888888999998 6888887776655 79999999999998887766543
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.28 E-value=4.7 Score=36.53 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=72.7
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEE-eecCcccHHHHh
Q 022892 27 ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVT-DVHETVQCEEVG 104 (290)
Q Consensus 27 en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s-~~~d~~~~~~l~ 104 (290)
++.+..+..|+.|++ .|+++|-.. .+| ...++.++.++++++ ..+-+ |++++++++.+.
T Consensus 22 ~~~e~a~~~a~Ali~----gGi~~IEIT------l~s---------p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~ 82 (211)
T COG0800 22 DDVEEALPLAKALIE----GGIPAIEIT------LRT---------PAALEAIRALAKEFPEALIGAGTVLNPEQARQAI 82 (211)
T ss_pred CCHHHHHHHHHHHHH----cCCCeEEEe------cCC---------CCHHHHHHHHHHhCcccEEccccccCHHHHHHHH
Confidence 356888999999988 589987542 112 234555666666666 33333 999999999987
Q ss_pred h-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 105 K-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 105 ~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
+ ..+++-=+. .|.++++.+.+.++|++ =|.+ |+.|+..|.|
T Consensus 83 ~aGa~fiVsP~---~~~ev~~~a~~~~ip~~--PG~~-TptEi~~Ale 124 (211)
T COG0800 83 AAGAQFIVSPG---LNPEVAKAANRYGIPYI--PGVA-TPTEIMAALE 124 (211)
T ss_pred HcCCCEEECCC---CCHHHHHHHHhCCCccc--CCCC-CHHHHHHHHH
Confidence 7 577665554 57789999988898875 5777 9999999976
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=89.25 E-value=3 Score=38.88 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=43.0
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s 92 (290)
++++-||||.+.. |.+...+.|+... ++|+++++.. .|+.|+ +.-++-+++.+++++.. ++|++-
T Consensus 68 ~~~~~viagv~~~-~~~~ai~~a~~a~----~~Gad~v~~~--------~P~y~~-~~~~~i~~~~~~v~~a~~~lpi~i 133 (288)
T cd00954 68 KGKVTLIAHVGSL-NLKESQELAKHAE----ELGYDAISAI--------TPFYYK-FSFEEIKDYYREIIAAAASLPMII 133 (288)
T ss_pred CCCCeEEeccCCC-CHHHHHHHHHHHH----HcCCCEEEEe--------CCCCCC-CCHHHHHHHHHHHHHhcCCCCEEE
Confidence 4578899999752 5666666666655 4799998742 122222 22135566788889988 899874
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.19 E-value=7.8 Score=39.07 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEE-EeecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIV-TDVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~-s~~~d~~~~~~l~~-~~ 107 (290)
..++.++.|++ +|++++....- ++.. ...+..++.+++++ +++++ -.+.+.+.+..+.+ .+
T Consensus 228 ~~~e~a~~L~~----agvdvivvD~a-----------~g~~-~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGa 291 (486)
T PRK05567 228 DNEERAEALVE----AGVDVLVVDTA-----------HGHS-EGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGA 291 (486)
T ss_pred chHHHHHHHHH----hCCCEEEEECC-----------CCcc-hhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCC
Confidence 35888888888 49987743211 0111 34566777777787 88855 69999999999988 79
Q ss_pred ceecccCCc-------------cCCHHHHHHHH----hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 108 DIIQIPAFL-------------CRQTDLLVAAA----KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 108 d~~kIgs~~-------------~~n~~lL~~~a----~~~~PVilstG~~~tl~e~~~Ave 151 (290)
|++++|-.. ..+...+.+++ +.+.|||..-|.. +..|+..|+.
T Consensus 292 d~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~-~~~di~kAla 351 (486)
T PRK05567 292 DAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIR-YSGDIAKALA 351 (486)
T ss_pred CEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCC-CHHHHHHHHH
Confidence 999986221 12344554443 3578999999999 9999998865
|
|
| >PLN02229 alpha-galactosidase | Back alignment and domain information |
|---|
Probab=89.10 E-value=2.9 Score=41.70 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHH-HHHcCCCEEeccccc-cCCCCCcccCC--CCChhHHHHHHHHHHHhcCCcEEE-----------
Q 022892 28 SEEHIMRMAKHIKSI-STKVGLPLVFKSSFD-KANRTSSKSFR--GPGMVEGLKILEKVKIAYDIPIVT----------- 92 (290)
Q Consensus 28 n~~~~le~Ak~L~~~-a~~~G~~~V~~~~~~-k~~rts~~~~~--g~~~~~~l~~L~~~~~~~Gi~~~s----------- 92 (290)
|++..++.|..|++. .+++|.+.|-....+ ...|...+.+. .-.+..|++.|.++.++.|+.|--
T Consensus 78 ~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~~ 157 (427)
T PLN02229 78 NETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQV 157 (427)
T ss_pred CHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCcccCC
Confidence 778889999987543 246788776665534 22344333221 111246899999999999998853
Q ss_pred ----eecCcccHHHHhh-hcceecccCCccC-------CHHHHHHHHhcCCeEEEeC---CCCCCHHHH
Q 022892 93 ----DVHETVQCEEVGK-VADIIQIPAFLCR-------QTDLLVAAAKTGKIINIKK---GQFCASSVM 146 (290)
Q Consensus 93 ----~~~d~~~~~~l~~-~~d~~kIgs~~~~-------n~~lL~~~a~~~~PVilst---G~~~tl~e~ 146 (290)
--+...+++..++ .+|++|+-..... -..+-+++.++|+||++|- |.. .+..|
T Consensus 158 ~pGS~g~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~WG~~-~p~~w 225 (427)
T PLN02229 158 RPGSLFHEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRSIFYSLCEWGVD-DPALW 225 (427)
T ss_pred CCCCccHHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCCcEEEecCCCCC-CHHHH
Confidence 1133344556677 7999998765331 1135567889999999984 544 45555
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.05 E-value=9.4 Score=36.50 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=74.9
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE-
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT- 92 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s- 92 (290)
+++.+.+.++. + ....+.++.|++ +|+++|-...-. +.. ...++.++++.+.. .++++.
T Consensus 81 ~~l~v~~~~~~--~-~~~~~~~~~l~e----agv~~I~vd~~~-----------G~~-~~~~~~i~~ik~~~p~v~Vi~G 141 (325)
T cd00381 81 GRLLVGAAVGT--R-EDDKERAEALVE----AGVDVIVIDSAH-----------GHS-VYVIEMIKFIKKKYPNVDVIAG 141 (325)
T ss_pred cCceEEEecCC--C-hhHHHHHHHHHh----cCCCEEEEECCC-----------CCc-HHHHHHHHHHHHHCCCceEEEC
Confidence 34555555443 3 235667777666 599887653211 111 23445555555544 388875
Q ss_pred eecCcccHHHHhh-hcceeccc--CCc-c----------CCHHHHHHHH----hcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 93 DVHETVQCEEVGK-VADIIQIP--AFL-C----------RQTDLLVAAA----KTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 93 ~~~d~~~~~~l~~-~~d~~kIg--s~~-~----------~n~~lL~~~a----~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
++.+.+.+..+.+ .+|+++++ ++. + -+..++..+. ..+.||+-.=|.. +..++..|..
T Consensus 142 ~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~-~~~di~kAla--- 217 (325)
T cd00381 142 NVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIR-TSGDIVKALA--- 217 (325)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCC-CHHHHHHHHH---
Confidence 8888888888887 69999984 211 1 1223333332 3479999888887 9999988864
Q ss_pred HcCCCcEE
Q 022892 155 LAGNPNVM 162 (290)
Q Consensus 155 ~~Gn~~i~ 162 (290)
.|-.-++
T Consensus 218 -~GA~~Vm 224 (325)
T cd00381 218 -AGADAVM 224 (325)
T ss_pred -cCCCEEE
Confidence 4654333
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=89.04 E-value=17 Score=32.84 Aligned_cols=181 Identities=13% Similarity=0.056 Sum_probs=100.2
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC-CCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G-~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
-++|+|..+-. +....++..+++.+ .| +.+|-. -+| ..+ .. .+..-.+.+++.|+++|++++-.
T Consensus 13 ~~ly~It~~~~--~~~~~~~~l~~al~----~G~v~~vQl--R~K--~l~---~~--~~~~~a~~l~~l~~~~gv~liIN 77 (221)
T PRK06512 13 CRIVLVAPPIA--DGAELAKLLRAALQ----GGDVASVIL--PQY--GLD---EA--TFQKQAEKLVPVIQEAGAAALIA 77 (221)
T ss_pred CeEEEEeCCCc--ccccHHHHHHHHHc----CCCccEEEE--eCC--CCC---HH--HHHHHHHHHHHHHHHhCCEEEEe
Confidence 35899987643 22334555555444 57 465432 122 000 00 11244567899999999999865
Q ss_pred ecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 94 VHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 94 ~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
- .++.... .+|-+-+|..++.=.. .+..-..++-|.+|+.. +.++..+|. ..|-+.+.+-+--++...
T Consensus 78 d----~~dlA~~~~adGVHLg~~d~~~~~-~r~~~~~~~iiG~s~~~--s~~~a~~A~----~~gaDYv~~Gpv~t~tK~ 146 (221)
T PRK06512 78 G----DSRIAGRVKADGLHIEGNLAALAE-AIEKHAPKMIVGFGNLR--DRHGAMEIG----ELRPDYLFFGKLGADNKP 146 (221)
T ss_pred C----HHHHHHHhCCCEEEECccccCHHH-HHHhcCCCCEEEecCCC--CHHHHHHhh----hcCCCEEEECCCCCCCCC
Confidence 2 3666555 5888899987653222 22222234556666432 567666653 357777777553221101
Q ss_pred CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+.....+..+.++++ .++||+. + +|.. ..-...+...||+|+-+-+-+.
T Consensus 147 ~~~p~gl~~l~~~~~~~~iPvvA-----I---------------GGI~---~~n~~~~~~~GA~giAvisai~ 196 (221)
T PRK06512 147 EAHPRNLSLAEWWAEMIEIPCIV-----Q---------------AGSD---LASAVEVAETGAEFVALERAVF 196 (221)
T ss_pred CCCCCChHHHHHHHHhCCCCEEE-----E---------------eCCC---HHHHHHHHHhCCCEEEEhHHhh
Confidence 111134555666666 7899855 1 2310 2223456788999998888774
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.96 E-value=5.3 Score=36.32 Aligned_cols=74 Identities=15% Similarity=-0.006 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc-----------CCHHHHHHHHhcCCeEEEeCCCCCC
Q 022892 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC-----------RQTDLLVAAAKTGKIINIKKGQFCA 142 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~-----------~n~~lL~~~a~~~~PVilstG~~~t 142 (290)
.+..+.+..+..|..+|++.-..++.-+..+ .+|++ |+... -++.|++++.+.+++||-.-... |
T Consensus 115 ~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~I--GTTLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~-t 191 (229)
T COG3010 115 DLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDII--GTTLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYN-T 191 (229)
T ss_pred hHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEE--ecccccccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCC-C
Confidence 5777777789999999999999988887776 57775 22211 46789999999999999988888 9
Q ss_pred HHHHHHHHH
Q 022892 143 SSVMVNSAE 151 (290)
Q Consensus 143 l~e~~~Ave 151 (290)
++....|.+
T Consensus 192 P~~Ak~a~~ 200 (229)
T COG3010 192 PEQAKKAIE 200 (229)
T ss_pred HHHHHHHHH
Confidence 999998866
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.92 E-value=9.9 Score=38.53 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=63.3
Q ss_pred HHHHHhcCCeEEEeC--CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCC
Q 022892 123 LVAAAKTGKIINIKK--GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHS 199 (290)
Q Consensus 123 L~~~a~~~~PVilst--G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs 199 (290)
++++.+.+..|.++- +...+++-+.+.++.+...|-..|.|+..... -.|...- .-+..+++ .++|+++ +.|-
T Consensus 120 v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~-~~P~~~~--~lv~~l~~~~~v~l~~-H~HN 195 (488)
T PRK09389 120 VEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVGI-LTPEKTY--ELFKRLSELVKGPVSI-HCHN 195 (488)
T ss_pred HHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-cCHHHHH--HHHHHHHhhcCCeEEE-EecC
Confidence 345556677665543 33336777777788888889888888877653 1232211 33566776 7889988 6664
Q ss_pred CCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 200 LQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
. +.+...-+.+|+.+||+ .+|.-+.
T Consensus 196 D------------------~GlAvANalaAv~aGa~--~Vd~Ti~ 220 (488)
T PRK09389 196 D------------------FGLAVANTLAALAAGAD--QVHVTIN 220 (488)
T ss_pred C------------------ccHHHHHHHHHHHcCCC--EEEEEcc
Confidence 2 22335557789999998 7887664
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=88.91 E-value=5.6 Score=38.11 Aligned_cols=140 Identities=12% Similarity=0.061 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceec-----ccCCccCCHHHHHHH----H-hcCCeEEEeC--CCCC
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQ-----IPAFLCRQTDLLVAA----A-KTGKIINIKK--GQFC 141 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~k-----Igs~~~~n~~lL~~~----a-~~~~PVilst--G~~~ 141 (290)
+.+....+.+++.|...+-==+ .++.-+ -||..+.+.+++.++ . ..+.||.+|. |...
T Consensus 77 ~~~~~aA~~~~~~g~d~IdlN~----------gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~ 146 (333)
T PRK11815 77 ADLAEAAKLAEDWGYDEINLNV----------GCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD 146 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEcC----------CCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCC
Confidence 5566777777777765442111 123222 267777888766553 2 2578999985 3321
Q ss_pred --CHHHHHHHHHHHHHcCCCcEEEEeecCC--CCCCC------CCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccC
Q 022892 142 --ASSVMVNSAEKVRLAGNPNVMVCERGTM--FGYND------LIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLD 209 (290)
Q Consensus 142 --tl~e~~~Ave~i~~~Gn~~i~L~~~gs~--~~y~~------~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~ 209 (290)
+.++..+.+..+...|-..+ .+|..+. -+|.. ..+++..+..+++ . ++||+.+.+-.
T Consensus 147 ~~t~~~~~~~~~~l~~aG~d~i-~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~---------- 215 (333)
T PRK11815 147 QDSYEFLCDFVDTVAEAGCDTF-IVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIK---------- 215 (333)
T ss_pred CcCHHHHHHHHHHHHHhCCCEE-EEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcC----------
Confidence 35566677777777886554 4554321 12221 2367778888887 5 89998843322
Q ss_pred CCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 210 GGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 210 ~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
. +.-+....+ ||||+||=+-.--|.
T Consensus 216 -------s-----~eda~~~l~-~aDgVmIGRa~l~nP 240 (333)
T PRK11815 216 -------T-----LEEAKEHLQ-HVDGVMIGRAAYHNP 240 (333)
T ss_pred -------C-----HHHHHHHHh-cCCEEEEcHHHHhCC
Confidence 1 222333343 799999987653333
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.86 E-value=19 Score=33.03 Aligned_cols=150 Identities=11% Similarity=0.001 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCcc--CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLC--RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~--~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
+....+.+...+.|++.+=--+ ..+ +..+.++.+.+.+.++-+..-...+.+++..|.
T Consensus 20 ~~k~~i~~~L~~~Gv~~iE~g~-------------------p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~- 79 (259)
T cd07939 20 EEKLAIARALDEAGVDEIEVGI-------------------PAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAAL- 79 (259)
T ss_pred HHHHHHHHHHHHcCCCEEEEec-------------------CCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHH-
Confidence 4555666667778877653321 112 223466777665444433333323777776654
Q ss_pred HHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccH
Q 022892 152 KVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELI 222 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~ 222 (290)
..|-+.+.++-..+.+ ..+. +.++ ...+...|+.|+.|.+.+..+. .-..+.+
T Consensus 80 ---~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~---------------~~~~~~~ 141 (259)
T cd07939 80 ---RCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDAS---------------RADPDFL 141 (259)
T ss_pred ---hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCC---------------CCCHHHH
Confidence 4566777777665521 0110 0010 1223333445777766544431 0124556
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 223 PCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 223 ~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
..++..+..+|++.+ .++|..-.+.|+++.++++.+++.
T Consensus 142 ~~~~~~~~~~G~~~i----------~l~DT~G~~~P~~v~~lv~~l~~~ 180 (259)
T cd07939 142 IEFAEVAQEAGADRL----------RFADTVGILDPFTTYELIRRLRAA 180 (259)
T ss_pred HHHHHHHHHCCCCEE----------EeCCCCCCCCHHHHHHHHHHHHHh
Confidence 677778888999843 237999999999999999999864
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=88.78 E-value=19 Score=33.69 Aligned_cols=121 Identities=20% Similarity=0.184 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
+-..|++.|.+.|++.+.+-....+.+ -+++.. ..|+.+.--...+.+++..+++.+.
T Consensus 82 ~~~~la~aa~~~g~~~~~~~~~~~~~~--------------------~i~~~~--~~~~~~ql~~~~~~~~~~~~i~~~~ 139 (299)
T cd02809 82 GELATARAAAAAGIPFTLSTVSTTSLE--------------------EVAAAA--PGPRWFQLYVPRDREITEDLLRRAE 139 (299)
T ss_pred HHHHHHHHHHHcCCCEEecCCCcCCHH--------------------HHHHhc--CCCeEEEEeecCCHHHHHHHHHHHH
Confidence 346799999999999975543322222 222222 2565555332226788888888877
Q ss_pred HcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 022892 155 LAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 233 (290)
Q Consensus 155 ~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G 233 (290)
..|. +.+.++.+... +........+..+++ +++||++=--.+ ...++.+..+|
T Consensus 140 ~~g~-~~i~l~~~~p~--~~~~~~~~~i~~l~~~~~~pvivK~v~s-----------------------~~~a~~a~~~G 193 (299)
T cd02809 140 AAGY-KALVLTVDTPV--LGRRLTWDDLAWLRSQWKGPLILKGILT-----------------------PEDALRAVDAG 193 (299)
T ss_pred HcCC-CEEEEecCCCC--CCCCCCHHHHHHHHHhcCCCEEEeecCC-----------------------HHHHHHHHHCC
Confidence 7764 56667766521 111134567888888 789998721111 56688889999
Q ss_pred CCEEEEeeeC
Q 022892 234 VDGVFMEVHD 243 (290)
Q Consensus 234 A~G~~IEkH~ 243 (290)
|+++.+.-|-
T Consensus 194 ~d~I~v~~~g 203 (299)
T cd02809 194 ADGIVVSNHG 203 (299)
T ss_pred CCEEEEcCCC
Confidence 9998887664
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PLN02765 pyruvate kinase | Back alignment and domain information |
|---|
Probab=88.74 E-value=5.9 Score=40.57 Aligned_cols=118 Identities=12% Similarity=0.026 Sum_probs=82.8
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC---CcEEEeecCcccHHHHhh---hcceecccC
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD---IPIVTDVHETVQCEEVGK---VADIIQIPA 114 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G---i~~~s~~~d~~~~~~l~~---~~d~~kIgs 114 (290)
+.+.+.|+|+|...+-.. .+.+..+++++.+.| +++++-+-.++.++-+.+ ..|.+-|+=
T Consensus 214 ~f~~~~~vD~ia~SFVr~--------------a~DI~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eIi~~sDgIMVAR 279 (526)
T PLN02765 214 TWGVPNKIDFLSLSYTRH--------------AEDVREAREFLSSLGLSQTQIFAKIENVEGLTHFDEILQEADGIILSR 279 (526)
T ss_pred HHHHHcCCCEEEECCCCC--------------HHHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEec
Confidence 455677888887643221 477889999998764 689999998888887776 589999998
Q ss_pred Ccc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 115 FLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 115 ~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
+++ -|..+++.+-..+||||. |-|- .|-.|+-..+..+. .|-+-++|-.-+..-.||.
T Consensus 280 GDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~-DGaDavMLSgETA~G~yPv 356 (526)
T PLN02765 280 GNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVL-DGADAILLGAETLRGLYPV 356 (526)
T ss_pred CccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHH-hCCCEEEecchhcCCCCHH
Confidence 887 445566777789999996 7653 24466666666555 4666667654443323775
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=88.65 E-value=3.3 Score=39.41 Aligned_cols=117 Identities=12% Similarity=0.152 Sum_probs=79.0
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT- 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s- 92 (290)
+-|+.+=--++. ++.+...+.|+.+. ++|++++.-- +||....|.+.. -.|..++++++..+||++.
T Consensus 133 ~~pVsvKiR~g~-~~~~~~~~~a~~l~----~~Gvd~i~Vh-----~Rt~~~~y~g~~--~~~~~i~~ik~~~~iPVi~n 200 (312)
T PRK10550 133 HLPVTVKVRLGW-DSGERKFEIADAVQ----QAGATELVVH-----GRTKEDGYRAEH--INWQAIGEIRQRLTIPVIAN 200 (312)
T ss_pred CcceEEEEECCC-CCchHHHHHHHHHH----hcCCCEEEEC-----CCCCccCCCCCc--ccHHHHHHHHhhcCCcEEEe
Confidence 345444333443 23233455555554 4799987653 677655565432 1367788888889999998
Q ss_pred -eecCcccHHHHhh--hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH
Q 022892 93 -DVHETVQCEEVGK--VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSA 150 (290)
Q Consensus 93 -~~~d~~~~~~l~~--~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Av 150 (290)
.+++++++..+.+ .+|.+.||-..+.|..+.+++.. +.| . .+.+|..+.+
T Consensus 201 GdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~-g~~------~-~~~~e~~~~~ 253 (312)
T PRK10550 201 GEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKY-NEP------R-MPWPEVVALL 253 (312)
T ss_pred CCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhc-CCC------C-CCHHHHHHHH
Confidence 8999999998764 69999999999999999888754 332 2 2677766544
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.64 E-value=2.1 Score=43.47 Aligned_cols=117 Identities=17% Similarity=0.128 Sum_probs=66.0
Q ss_pred cccHHHHhh-hcceecccCCc---cCCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE-Ee----
Q 022892 97 TVQCEEVGK-VADIIQIPAFL---CRQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV-CE---- 165 (290)
Q Consensus 97 ~~~~~~l~~-~~d~~kIgs~~---~~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L-~~---- 165 (290)
.+.++.+.+ .+|++-|-..+ ....++++++-+. +.||+..|. .|.++.+.+++ .|-+-|.+ +.
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V--~t~~~a~~~~~----aGad~I~vg~g~Gs~ 316 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNV--VTADQAKNLID----AGADGLRIGMGSGSI 316 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCc--CCHHHHHHHHH----cCCCEEEECCcCCcc
Confidence 344455555 58888876632 2334677777654 568887544 46888777654 56654433 12
Q ss_pred ecCC----CCCCCCCCCchhHHHH----HhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 166 RGTM----FGYNDLIVDPRNLEWM----REANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 166 ~gs~----~~y~~~~~dL~~i~~l----k~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
|.+. .++| .+.++..+ ++.++||+.|.-=.. + ..++ .|.++||+++
T Consensus 317 ~~t~~~~~~g~p----~~~ai~~~~~~~~~~~v~vIadGGi~~----------------~-----~di~-kAla~GA~~V 370 (495)
T PTZ00314 317 CITQEVCAVGRP----QASAVYHVARYARERGVPCIADGGIKN----------------S-----GDIC-KALALGADCV 370 (495)
T ss_pred cccchhccCCCC----hHHHHHHHHHHHhhcCCeEEecCCCCC----------------H-----HHHH-HHHHcCCCEE
Confidence 3332 1233 23343333 336899987532111 1 2344 5799999999
Q ss_pred EEeeeCCC
Q 022892 238 FMEVHDDP 245 (290)
Q Consensus 238 ~IEkH~t~ 245 (290)
|+=+-|+-
T Consensus 371 m~G~~~a~ 378 (495)
T PTZ00314 371 MLGSLLAG 378 (495)
T ss_pred EECchhcc
Confidence 99876643
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=88.60 E-value=2.9 Score=39.89 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=55.4
Q ss_pred hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC---C-CCCC--CCCchhHHHHHh-cCCCEEEeCCCCC
Q 022892 128 KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF---G-YNDL--IVDPRNLEWMRE-ANCPVVADVTHSL 200 (290)
Q Consensus 128 ~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~---~-y~~~--~~dL~~i~~lk~-~~~pV~~D~sHs~ 200 (290)
+.++||+++-+.. +.+||.++++.+...|-. .+-++.+... . +... ..-...+..+++ .++||++--+
T Consensus 99 ~~~~pvi~sI~g~-~~~e~~~~a~~~~~agad-~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~--- 173 (334)
T PRK07565 99 AVDIPVIASLNGS-SAGGWVDYARQIEQAGAD-ALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLS--- 173 (334)
T ss_pred hcCCcEEEEeccC-CHHHHHHHHHHHHHcCCC-EEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeC---
Confidence 4478999999887 999999999999888754 3434432210 0 1100 001234455666 6899987211
Q ss_pred CCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 201 QQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
| + -.....++.++...|++|+++
T Consensus 174 --p-------------~-~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 174 --P-------------Y-FSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred --C-------------C-chhHHHHHHHHHHcCCCeEEE
Confidence 0 1 111256677778899998755
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.50 E-value=9.9 Score=35.35 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=53.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
++++-||+|.+.. |.+..+++|++..+ +|+++|+... |. |..+.-++-+++.+++++..++|++-=
T Consensus 68 ~~~~~vi~gv~~~-~~~~~i~~a~~a~~----~G~d~v~~~p----P~-----~~~~~~~~i~~~~~~ia~~~~~pv~lY 133 (292)
T PRK03170 68 NGRVPVIAGTGSN-STAEAIELTKFAEK----AGADGALVVT----PY-----YNKPTQEGLYQHFKAIAEATDLPIILY 133 (292)
T ss_pred CCCCcEEeecCCc-hHHHHHHHHHHHHH----cCCCEEEECC----Cc-----CCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3566788999863 56666666666555 6999887631 22 212221345667888888888888731
Q ss_pred --------ecCcccHHHHhh--hcceecccCCccCCH
Q 022892 94 --------VHETVQCEEVGK--VADIIQIPAFLCRQT 120 (290)
Q Consensus 94 --------~~d~~~~~~l~~--~~d~~kIgs~~~~n~ 120 (290)
.++++.+..+.+ .+-.+|-++.++.++
T Consensus 134 n~P~~~g~~l~~~~~~~L~~~p~v~giK~s~~d~~~~ 170 (292)
T PRK03170 134 NVPGRTGVDILPETVARLAEHPNIVGIKEATGDLERV 170 (292)
T ss_pred ECccccCCCCCHHHHHHHHcCCCEEEEEECCCCHHHH
Confidence 223333333333 244556665554443
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.47 E-value=3.5 Score=38.81 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=42.9
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.+. |....++++++..+ +|+++|... .|+.| ...-++-+...+++++..++|++-
T Consensus 74 ~~~~pvi~gv~~--~t~~~i~~~~~a~~----~Gadav~~~--------pP~y~-~~~~~~i~~~f~~va~~~~lpi~l 137 (303)
T PRK03620 74 AGRVPVIAGAGG--GTAQAIEYAQAAER----AGADGILLL--------PPYLT-EAPQEGLAAHVEAVCKSTDLGVIV 137 (303)
T ss_pred CCCCcEEEecCC--CHHHHHHHHHHHHH----hCCCEEEEC--------CCCCC-CCCHHHHHHHHHHHHHhCCCCEEE
Confidence 456778999885 77777777776655 699998763 12222 222134455688888888999874
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=88.44 E-value=2.4 Score=39.61 Aligned_cols=91 Identities=19% Similarity=0.151 Sum_probs=56.1
Q ss_pred hcCCeEEEeCCCCCCHHHHHHHHHHHHHcC-CCcEEEEeecC---CC-CCCC---CCCCchhHHHHHh-cCCCEEEeCCC
Q 022892 128 KTGKIINIKKGQFCASSVMVNSAEKVRLAG-NPNVMVCERGT---MF-GYND---LIVDPRNLEWMRE-ANCPVVADVTH 198 (290)
Q Consensus 128 ~~~~PVilstG~~~tl~e~~~Ave~i~~~G-n~~i~L~~~gs---~~-~y~~---~~~dL~~i~~lk~-~~~pV~~D~sH 198 (290)
+.+.||+++-+.. +.++|..+++.+...| -+ .+=+.+++ .. ++.. ...-...+..+|+ .++||.+--+-
T Consensus 89 ~~~~p~i~si~g~-~~~~~~~~a~~~~~aG~~D-~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 166 (301)
T PRK07259 89 EFDTPIIANVAGS-TEEEYAEVAEKLSKAPNVD-AIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP 166 (301)
T ss_pred ccCCcEEEEeccC-CHHHHHHHHHHHhccCCcC-EEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4578999999877 8999999999998887 44 33333322 01 1100 1111244555666 58899873321
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 199 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 199 s~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
+. +....++..+.+.|++|+.+
T Consensus 167 ~~-------------------~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 167 NV-------------------TDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred Cc-------------------hhHHHHHHHHHHcCCCEEEE
Confidence 11 11245677788899998654
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=88.44 E-value=3.5 Score=37.96 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=54.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT- 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s- 92 (290)
++++-||+|.+.. +.+..+++|++ ++++|+++|+... |+.|. ..-++-++..+++++..++|++-
T Consensus 64 ~~~~~vi~gv~~~-~~~~~i~~a~~----a~~~Gad~v~v~p--------P~y~~-~~~~~~~~~~~~ia~~~~~pi~iY 129 (281)
T cd00408 64 AGRVPVIAGVGAN-STREAIELARH----AEEAGADGVLVVP--------PYYNK-PSQEGIVAHFKAVADASDLPVILY 129 (281)
T ss_pred CCCCeEEEecCCc-cHHHHHHHHHH----HHHcCCCEEEECC--------CcCCC-CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3567899999873 55555555555 4557999987631 22122 22134566788888888999873
Q ss_pred -------eecCcccHHHHhh--hcceecccCCccCCH
Q 022892 93 -------DVHETVQCEEVGK--VADIIQIPAFLCRQT 120 (290)
Q Consensus 93 -------~~~d~~~~~~l~~--~~d~~kIgs~~~~n~ 120 (290)
..++++.+..|.+ .+-.+|..+.++.+.
T Consensus 130 n~P~~tg~~l~~~~~~~L~~~~~v~giK~s~~d~~~~ 166 (281)
T cd00408 130 NIPGRTGVDLSPETIARLAEHPNIVGIKDSSGDLDRL 166 (281)
T ss_pred ECccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHHHH
Confidence 2334444444443 255666666555443
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.38 E-value=22 Score=33.21 Aligned_cols=153 Identities=7% Similarity=-0.002 Sum_probs=87.6
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV 94 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~ 94 (290)
.++|+|..+....+ ...++..+++.+ .|+.+|-.- .| . .....+..-.+.+++.|+++|++++..
T Consensus 130 p~ly~it~~~~~~~-~~~~~~~~~~l~----~g~~~vqlR--~k--~-----~~~~~~~~~~~~l~~~~~~~~~~liin- 194 (312)
T PRK08999 130 PDTYLITPEGEDGD-AAFLARLERALA----AGIRLIQLR--AP--Q-----LPPAAYRALARAALGLCRRAGAQLLLN- 194 (312)
T ss_pred CCEEEEECcccccc-HHHHHHHHHHHH----CCCcEEEEe--CC--C-----CCHHHHHHHHHHHHHHHHHhCCEEEEE-
Confidence 47899988754211 123444444443 587765431 11 0 000012355677999999999998876
Q ss_pred cCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC-C
Q 022892 95 HETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG-Y 172 (290)
Q Consensus 95 ~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~-y 172 (290)
+.++.+.+ .+|-+-+|..++..... +.. ..++.|.+|+ . +.+|+..|.+ .|-+.+.+-+.-.+.. .
T Consensus 195 ---d~~~la~~~~~~GvHl~~~d~~~~~~-r~~-~~~~~ig~S~--h-~~~~~~~a~~----~~~dyi~~gpvf~t~tk~ 262 (312)
T PRK08999 195 ---GDPELAEDLGADGVHLTSAQLAALAA-RPL-PAGRWVAASC--H-DAEELARAQR----LGVDFAVLSPVQPTASHP 262 (312)
T ss_pred ---CcHHHHHhcCCCEEEcChhhcChHhh-ccC-CCCCEEEEec--C-CHHHHHHHHh----cCCCEEEECCCcCCCCCC
Confidence 23555555 58888888877754333 221 2245666776 3 8898877643 4666666654322110 1
Q ss_pred CCCCCCchhHHHHHh-cCCCEEE
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVA 194 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~ 194 (290)
....+.+..+..+++ +++||+.
T Consensus 263 ~~~~~g~~~~~~~~~~~~~Pv~A 285 (312)
T PRK08999 263 GAAPLGWEGFAALIAGVPLPVYA 285 (312)
T ss_pred CCCCCCHHHHHHHHHhCCCCEEE
Confidence 112345666777776 7899865
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.21 E-value=13 Score=34.75 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=41.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
++++-||||.++. +.+.++++|++..+ +|+|+|... .|+.|. +.-++-++.++++++..++|++-
T Consensus 71 ~~~~~viagvg~~-~t~~ai~~a~~a~~----~Gad~v~v~--------~P~y~~-~~~~~l~~~f~~va~a~~lPv~i 135 (293)
T PRK04147 71 KGKVKLIAQVGSV-NTAEAQELAKYATE----LGYDAISAV--------TPFYYP-FSFEEICDYYREIIDSADNPMIV 135 (293)
T ss_pred CCCCCEEecCCCC-CHHHHHHHHHHHHH----cCCCEEEEe--------CCcCCC-CCHHHHHHHHHHHHHhCCCCEEE
Confidence 4667899999863 56666666666544 699998753 122222 22134466788888888888774
|
|
| >PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
Probab=88.20 E-value=11 Score=34.41 Aligned_cols=47 Identities=4% Similarity=-0.065 Sum_probs=26.6
Q ss_pred HHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 122 LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 122 lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
+.+.+.+.|..+.+.+.....+.....+++.+...+.+++-++.-..
T Consensus 143 l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~~v~~~~lgl~~D~~ 189 (283)
T PRK13209 143 SVELASRASVTLAFEIMDTPFMNSISKALGYAHYLNSPWFQLYPDIG 189 (283)
T ss_pred HHHHHHHhCCEEEEeecCCcccCCHHHHHHHHHHhCCCccceEeccc
Confidence 33445556788888775332333344455555555666676666554
|
|
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.09 E-value=3.8 Score=39.32 Aligned_cols=99 Identities=23% Similarity=0.259 Sum_probs=60.5
Q ss_pred CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCchhHHHH-Hh--cCCCEE
Q 022892 118 RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWM-RE--ANCPVV 193 (290)
Q Consensus 118 ~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i~~l-k~--~~~pV~ 193 (290)
..+..|+ +.+..||++| |.. +-+|.+.|+| .|-.-|++-.-|... .|-...+ .+++.. +. -.+||-
T Consensus 213 ~Di~wLr--~~T~LPIvvK-Gil-t~eDA~~Ave----~G~~GIIVSNHGgRQlD~vpAtI--~~L~Evv~aV~~ri~V~ 282 (363)
T KOG0538|consen 213 KDIKWLR--SITKLPIVVK-GVL-TGEDARKAVE----AGVAGIIVSNHGGRQLDYVPATI--EALPEVVKAVEGRIPVF 282 (363)
T ss_pred hhhHHHH--hcCcCCeEEE-eec-ccHHHHHHHH----hCCceEEEeCCCccccCcccchH--HHHHHHHHHhcCceEEE
Confidence 3444444 5678899997 555 7889888887 466667776666642 2322222 233332 22 258998
Q ss_pred EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCC
Q 022892 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA 248 (290)
Q Consensus 194 ~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka 248 (290)
+|.-- ..| ..+.. |.|+||.|++|-+-+--.-+
T Consensus 283 lDGGV----------------R~G-----~DVlK-ALALGAk~VfiGRP~v~gLA 315 (363)
T KOG0538|consen 283 LDGGV----------------RRG-----TDVLK-ALALGAKGVFIGRPIVWGLA 315 (363)
T ss_pred EecCc----------------ccc-----hHHHH-HHhcccceEEecCchheeec
Confidence 87321 124 45554 69999999999876644333
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=87.96 E-value=8.7 Score=37.44 Aligned_cols=127 Identities=18% Similarity=0.277 Sum_probs=85.4
Q ss_pred CCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEE
Q 022892 13 AAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIV 91 (290)
Q Consensus 13 ~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~ 91 (290)
.+++++|-|..+.- +..++.++.|++ +|+|++..++=. +.. +..+..+++++++++ ++++
T Consensus 93 ~~~~l~V~aavg~~---~~~~er~~~L~~----agvD~ivID~a~-----------g~s-~~~~~~ik~ik~~~~~~~vi 153 (352)
T PF00478_consen 93 EKGRLLVAAAVGTR---DDDFERAEALVE----AGVDVIVIDSAH-----------GHS-EHVIDMIKKIKKKFPDVPVI 153 (352)
T ss_dssp TTSCBCEEEEEESS---TCHHHHHHHHHH----TT-SEEEEE-SS-----------TTS-HHHHHHHHHHHHHSTTSEEE
T ss_pred ccccceEEEEecCC---HHHHHHHHHHHH----cCCCEEEccccC-----------ccH-HHHHHHHHHHHHhCCCceEE
Confidence 45677888777652 345889999988 599998765211 222 566778888889998 8888
Q ss_pred E-eecCcccHHHHhh-hcceecccCC---ccC----------CHHHHHHHH----hcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 92 T-DVHETVQCEEVGK-VADIIQIPAF---LCR----------QTDLLVAAA----KTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 92 s-~~~d~~~~~~l~~-~~d~~kIgs~---~~~----------n~~lL~~~a----~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
. -+-+.+.+..|.+ .+|.+|||=+ -|+ |..-+..++ +.+.|||-.=|.. +..++-.|+.
T Consensus 154 aGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~-~sGDi~KAla- 231 (352)
T PF00478_consen 154 AGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIR-TSGDIVKALA- 231 (352)
T ss_dssp EEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-S-SHHHHHHHHH-
T ss_pred ecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcC-cccceeeeee-
Confidence 8 8888889988887 7999999833 333 222233333 3688999999999 9999888753
Q ss_pred HHHcCCCcEEE
Q 022892 153 VRLAGNPNVMV 163 (290)
Q Consensus 153 i~~~Gn~~i~L 163 (290)
.|.+-+++
T Consensus 232 ---~GAd~VMl 239 (352)
T PF00478_consen 232 ---AGADAVML 239 (352)
T ss_dssp ---TT-SEEEE
T ss_pred ---ecccceee
Confidence 56655554
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.95 E-value=26 Score=33.60 Aligned_cols=92 Identities=18% Similarity=0.109 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHh---cCCcEEEeecCcccH---HHHh---h-h-cceec--ccCC------ccC-CHHHH----HHH-H
Q 022892 73 VEGLKILEKVKIA---YDIPIVTDVHETVQC---EEVG---K-V-ADIIQ--IPAF------LCR-QTDLL----VAA-A 127 (290)
Q Consensus 73 ~~~l~~L~~~~~~---~Gi~~~s~~~d~~~~---~~l~---~-~-~d~~k--Igs~------~~~-n~~lL----~~~-a 127 (290)
..-+++++..+.+ .|+.+.....-+..- +++. + . +|++- |.|- ++. +.+++ +++ +
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~ 158 (310)
T COG0167 79 DAFLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKA 158 (310)
T ss_pred HHHHHHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHh
Confidence 3445556666666 577888877763322 2221 1 1 24332 2332 333 44433 343 3
Q ss_pred hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 128 KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 128 ~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
.+.+||++|-.. +.+++.+.++.+.+.|-+-+++...
T Consensus 159 ~~~~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~NT 195 (310)
T COG0167 159 ATKVPVFVKLAP--NITDIDEIAKAAEEAGADGLIAINT 195 (310)
T ss_pred cccCceEEEeCC--CHHHHHHHHHHHHHcCCcEEEEEee
Confidence 467999999998 7999999999999888776766663
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=87.90 E-value=6.8 Score=38.59 Aligned_cols=90 Identities=21% Similarity=0.137 Sum_probs=54.2
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC-C------CCCchhH----HHHHh-cCCCEEEeCC
Q 022892 130 GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND-L------IVDPRNL----EWMRE-ANCPVVADVT 197 (290)
Q Consensus 130 ~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~-~------~~dL~~i----~~lk~-~~~pV~~D~s 197 (290)
.+|||.|-....+.+||.+.++.+...|.+-+-| --|.++.+. . --|...+ .++|+ ..+||.+=-+
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iEL--NiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLs 190 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEI--NFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMT 190 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEE--ECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeC
Confidence 4699999954238999999999998877543333 111111111 0 0123333 44466 6789877111
Q ss_pred CCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 198 HSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 198 Hs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
- . -..+..++.+|...||+|+++=
T Consensus 191 P------------------n-~t~i~~ia~aa~~~Gadgi~li 214 (385)
T PLN02495 191 P------------------N-ITDITQPARVALKSGCEGVAAI 214 (385)
T ss_pred C------------------C-hhhHHHHHHHHHHhCCCEEEEe
Confidence 0 0 1113678888999999998763
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.88 E-value=21 Score=32.51 Aligned_cols=162 Identities=19% Similarity=0.183 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEE-------------EeecCcccH
Q 022892 34 RMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIV-------------TDVHETVQC 100 (290)
Q Consensus 34 e~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~-------------s~~~d~~~~ 100 (290)
+.--+|..+|...|+..++-. +.+-++.......+|++ -|||- .++
T Consensus 33 ~iv~~mA~Aa~~gGAvgiR~~--------------------gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptl-keV 91 (229)
T COG3010 33 EIVAAMALAAEQGGAVGIRIE--------------------GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTL-KEV 91 (229)
T ss_pred hHHHHHHHHHHhCCcceEeec--------------------chhhHHHHHhhCCCCeEEEEecCCCCCCceecccH-HHH
Confidence 444455556666788777643 33334444444444443 23332 234
Q ss_pred HHHhh-hcceecccCCccCCH--HHHHHHHhcCCe-EEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC--
Q 022892 101 EEVGK-VADIIQIPAFLCRQT--DLLVAAAKTGKI-INIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND-- 174 (290)
Q Consensus 101 ~~l~~-~~d~~kIgs~~~~n~--~lL~~~a~~~~P-VilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~-- 174 (290)
+.|.+ .++++.+-+..=.-. ++=+.+.+.+.| .++-..-+ |++|.++|.+ .|-+-|-=...|.. +|+.
T Consensus 92 d~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~S-t~ee~l~a~~----~G~D~IGTTLsGYT-~~~~~~ 165 (229)
T COG3010 92 DALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCS-TFEEGLNAHK----LGFDIIGTTLSGYT-GYTEKP 165 (229)
T ss_pred HHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccC-CHHHHHHHHH----cCCcEEeccccccc-CCCCCC
Confidence 44444 566666554433211 222223333333 45555666 9999998854 46544433344432 2222
Q ss_pred CCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 175 LIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 175 ~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.+-|+.-+..+.+.+++|+.-.-. --|..+..|...||+++++-.-+|
T Consensus 166 ~~pDf~lvk~l~~~~~~vIAEGr~----------------------~tP~~Ak~a~~~Ga~aVvVGsAIT 213 (229)
T COG3010 166 TEPDFQLVKQLSDAGCRVIAEGRY----------------------NTPEQAKKAIEIGADAVVVGSAIT 213 (229)
T ss_pred CCCcHHHHHHHHhCCCeEEeeCCC----------------------CCHHHHHHHHHhCCeEEEECcccC
Confidence 356777888887789999873221 117888899999999998877664
|
|
| >PLN02692 alpha-galactosidase | Back alignment and domain information |
|---|
Probab=87.86 E-value=2 Score=42.66 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHH-HHHcCCCEEeccccccCC-CCCcccCC--CCChhHHHHHHHHHHHhcCCcEEE-------ee--
Q 022892 28 SEEHIMRMAKHIKSI-STKVGLPLVFKSSFDKAN-RTSSKSFR--GPGMVEGLKILEKVKIAYDIPIVT-------DV-- 94 (290)
Q Consensus 28 n~~~~le~Ak~L~~~-a~~~G~~~V~~~~~~k~~-rts~~~~~--g~~~~~~l~~L~~~~~~~Gi~~~s-------~~-- 94 (290)
|++..++.|..++.. -+++|...|-....+... |...+.+. .-.+..|++.|.++.++.|+.|-- +.
T Consensus 71 ~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKfGIy~d~G~~tC~~ 150 (412)
T PLN02692 71 DEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKLGIYSDAGYFTCSK 150 (412)
T ss_pred CHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCceEEEecCCccccCC
Confidence 778888888877653 234677766665544322 32222221 111247899999999999998742 11
Q ss_pred cCcc-------cHHHHhh-hcceecccCCcc--C-----CHHHHHHHHhcCCeEEEeC
Q 022892 95 HETV-------QCEEVGK-VADIIQIPAFLC--R-----QTDLLVAAAKTGKIINIKK 137 (290)
Q Consensus 95 ~d~~-------~~~~l~~-~~d~~kIgs~~~--~-----n~~lL~~~a~~~~PVilst 137 (290)
..|- .++.+++ .+|++|+-.... + -..+-+++.++|+||++|-
T Consensus 151 ~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~Sl 208 (412)
T PLN02692 151 TMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKAGRPIFFSL 208 (412)
T ss_pred CCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHhCCCeEEEe
Confidence 1233 2344556 699999865432 1 1135677889999999874
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=87.69 E-value=22 Score=32.57 Aligned_cols=161 Identities=21% Similarity=0.242 Sum_probs=93.2
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCcc-CCHH
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLC-RQTD 121 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~-~n~~ 121 (290)
..+.|.|+++-..-. +.. ++.+..+.+..++..+|++-+|-++.++ ...+|++-++|=.- +|..
T Consensus 28 ~~~~gtdai~vGGS~-----------~vt-~~~~~~~v~~ik~~~lPvilfp~~~~~i---~~~aDa~l~~svlNs~~~~ 92 (232)
T PRK04169 28 ICESGTDAIIVGGSD-----------GVT-EENVDELVKAIKEYDLPVILFPGNIEGI---SPGADAYLFPSVLNSRNPY 92 (232)
T ss_pred HHhcCCCEEEEcCCC-----------ccc-hHHHHHHHHHHhcCCCCEEEeCCCcccc---CcCCCEEEEEEEecCCCcc
Confidence 344799998875322 111 3455555555555999999998887765 44678777776433 3332
Q ss_pred HH--------HHHHhcCC---e---EEE---------eCCCC--CCHHHHHHHHHHHHH-cCCCcEEEEeecCCCCCCCC
Q 022892 122 LL--------VAAAKTGK---I---INI---------KKGQF--CASSVMVNSAEKVRL-AGNPNVMVCERGTMFGYNDL 175 (290)
Q Consensus 122 lL--------~~~a~~~~---P---Vil---------stG~~--~tl~e~~~Ave~i~~-~Gn~~i~L~~~gs~~~y~~~ 175 (290)
.+ ..+.+.+. | +++ .+... .+.+|+..+...-.. -|- +++.++-|+.++.+
T Consensus 93 ~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~-~~vYle~gs~~g~~-- 169 (232)
T PRK04169 93 WIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGM-PIVYLEYGGGAGDP-- 169 (232)
T ss_pred hHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHHHHHcCC-CeEEEECCCCCCCC--
Confidence 22 12222222 2 222 22221 244555555443222 233 58888887754433
Q ss_pred CCCchhHHHHHh-cCC-CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 176 IVDPRNLEWMRE-ANC-PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 176 ~~dL~~i~~lk~-~~~-pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.|...+..+++ .+. ||.+- +|.|. ...+..+...||||+++=+-+.
T Consensus 170 -~~~e~I~~v~~~~~~~pvivG--------------------GGIrs--~e~a~~~l~~GAD~VVVGSai~ 217 (232)
T PRK04169 170 -VPPEMVKAVKKALDITPLIYG--------------------GGIRS--PEQARELMAAGADTIVVGNIIE 217 (232)
T ss_pred -CCHHHHHHHHHhcCCCcEEEE--------------------CCCCC--HHHHHHHHHhCCCEEEEChHHh
Confidence 47778888888 777 98771 12111 4456677889999999988774
|
|
| >PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) [] | Back alignment and domain information |
|---|
Probab=87.52 E-value=1.1 Score=35.10 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=43.1
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCC-C-CCCCChHH
Q 022892 183 EWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD-G-PTQWPLRN 260 (290)
Q Consensus 183 ~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D-~-~~sl~p~~ 260 (290)
..+++.++.|++|+.|+. ++ ..+....-.+|++ +++-|..+|...+. + +.... +.
T Consensus 15 ~~~~~~~~kivvD~~~G~---------------~~-----~~~~~ll~~lg~~--~~~~n~~~d~~f~~~~~p~p~~-~~ 71 (104)
T PF02879_consen 15 EAIKKSGLKIVVDCMNGA---------------GS-----DILPRLLERLGCD--VIELNCDPDPDFPNQHAPNPEE-ES 71 (104)
T ss_dssp HHHHHTTCEEEEE-TTST---------------TH-----HHHHHHHHHTTCE--EEEESSS-STTGTTTSTSSTST-TT
T ss_pred hhcccCCCEEEEECCCCH---------------HH-----HHHHHHHHHcCCc--EEEEeccccccccccccccccc-ch
Confidence 344556789999999995 12 4555556789997 88899888887764 2 22222 56
Q ss_pred HHHHHHHHHHHH
Q 022892 261 LEELLEELVAIA 272 (290)
Q Consensus 261 l~~lv~~ir~~~ 272 (290)
+..+.+.+++..
T Consensus 72 l~~~~~~v~~~~ 83 (104)
T PF02879_consen 72 LQRLIKIVRESG 83 (104)
T ss_dssp THHHHHHHHHST
T ss_pred hHHHHHHhhccC
Confidence 677666666543
|
PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B .... |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.49 E-value=25 Score=32.97 Aligned_cols=228 Identities=20% Similarity=0.242 Sum_probs=119.6
Q ss_pred hhHHhhhcCCCC----eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC-Cc---cc----C-CCCC
Q 022892 5 TALFNQLKAAEP----FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT-SS---KS----F-RGPG 71 (290)
Q Consensus 5 ~~~~~~i~~~~~----~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt-s~---~~----~-~g~~ 71 (290)
+..|......++ +|+.+|=- |.+.+++.++.|.+ .|+|++-...=..+|-- .| .+ . .|..
T Consensus 5 ~~~F~~l~~~~~~a~i~yit~GdP---~~e~s~e~i~~L~~----~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t 77 (265)
T COG0159 5 DQKFAQLKAENRGALIPYVTAGDP---DLETSLEIIKTLVE----AGADILELGVPFSDPVADGPTIQAAHLRALAAGVT 77 (265)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCC---CHHHHHHHHHHHHh----CCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCC
Confidence 445666664443 34444421 66888888888888 59999876541112210 00 00 0 1333
Q ss_pred hhHHHHHHHHHHHh-cCCcEEE-eecCcc----cHH---HHhh-hcceecccCCccCCH-HHHHHHHhcCC-eEEEeCCC
Q 022892 72 MVEGLKILEKVKIA-YDIPIVT-DVHETV----QCE---EVGK-VADIIQIPAFLCRQT-DLLVAAAKTGK-IINIKKGQ 139 (290)
Q Consensus 72 ~~~~l~~L~~~~~~-~Gi~~~s-~~~d~~----~~~---~l~~-~~d~~kIgs~~~~n~-~lL~~~a~~~~-PVilstG~ 139 (290)
+++-|+.++++.++ .++|++- +-+++- .-. .+.+ .+|-+-|+---..-- ++...+.+.+. ||.|-..+
T Consensus 78 ~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPt 157 (265)
T COG0159 78 LEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPT 157 (265)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 45667777787744 6767665 444442 112 2333 466666665444322 46566666766 78888887
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC---CCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccC
Q 022892 140 FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL---IVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 140 ~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~---~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
+ +.+-++..++ ....-+.++-|....+-... .+. ..+..+|+ .++||++ --++
T Consensus 158 t-~~~rl~~i~~----~a~GFiY~vs~~GvTG~~~~~~~~~~-~~v~~vr~~~~~Pv~v--GFGI--------------- 214 (265)
T COG0159 158 T-PDERLKKIAE----AASGFIYYVSRMGVTGARNPVSADVK-ELVKRVRKYTDVPVLV--GFGI--------------- 214 (265)
T ss_pred C-CHHHHHHHHH----hCCCcEEEEecccccCCCcccchhHH-HHHHHHHHhcCCCeEE--ecCc---------------
Confidence 7 6555555443 22234666666222222221 122 56777888 7899755 1121
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 216 GGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 216 ~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
.. ++.+...... |||+++=+-+.- .+.++...-..+++++|++.++.
T Consensus 215 s~-----~e~~~~v~~~-ADGVIVGSAiV~--~i~~~~~~~~~~~~~~l~~~l~~ 261 (265)
T COG0159 215 SS-----PEQAAQVAEA-ADGVIVGSAIVK--IIEEGLDEEALEELRALVKELKA 261 (265)
T ss_pred CC-----HHHHHHHHHh-CCeEEEcHHHHH--HHHhccchhhHHHHHHHHHHHHH
Confidence 11 3445455555 999887654410 00111112234566666666654
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.43 E-value=9.1 Score=38.99 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=78.3
Q ss_pred CCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC--CcE
Q 022892 13 AAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD--IPI 90 (290)
Q Consensus 13 ~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G--i~~ 90 (290)
..+++.|.++.+. +..++.|+.|++. |+|++... +++. +. ...++.++++.++++ +++
T Consensus 228 ~~grL~V~~av~~----~~~~~ra~~Lv~a----Gvd~i~vd-------~a~g-~~----~~~~~~i~~ir~~~~~~~~V 287 (502)
T PRK07107 228 SSKRYVVGAGINT----RDYAERVPALVEA----GADVLCID-------SSEG-YS----EWQKRTLDWIREKYGDSVKV 287 (502)
T ss_pred hccCeeeeeccCh----hhHHHHHHHHHHh----CCCeEeec-------Cccc-cc----HHHHHHHHHHHHhCCCCceE
Confidence 4678888888764 3478999999984 99988753 1111 11 233555666666665 566
Q ss_pred EE-eecCcccHHHHhh-hcceecc----cCCccC---------CHHHHHHHHh--------cC--CeEEEeCCCCCCHHH
Q 022892 91 VT-DVHETVQCEEVGK-VADIIQI----PAFLCR---------QTDLLVAAAK--------TG--KIINIKKGQFCASSV 145 (290)
Q Consensus 91 ~s-~~~d~~~~~~l~~-~~d~~kI----gs~~~~---------n~~lL~~~a~--------~~--~PVilstG~~~tl~e 145 (290)
.. ++.+++.+..+.+ .+|+++| ||-..+ +...+.+++. .+ +|||..-|.- +..+
T Consensus 288 ~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir-~~gd 366 (502)
T PRK07107 288 GAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIV-YDYH 366 (502)
T ss_pred EeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCC-chhH
Confidence 55 8999999999888 7999988 322222 2233333333 14 7999999988 8888
Q ss_pred HHHHHH
Q 022892 146 MVNSAE 151 (290)
Q Consensus 146 ~~~Ave 151 (290)
+..|+.
T Consensus 367 i~KAla 372 (502)
T PRK07107 367 MTLALA 372 (502)
T ss_pred HHHHHH
Confidence 877754
|
|
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.31 E-value=25 Score=34.95 Aligned_cols=179 Identities=12% Similarity=0.071 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCC-------C---------hhHHHHHHHHHHHhcCCcEE
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGP-------G---------MVEGLKILEKVKIAYDIPIV 91 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~-------~---------~~~~l~~L~~~~~~~Gi~~~ 91 (290)
+.+.-+++|++|-++ |++.+=-..+. .+++.|+.. + ...-.+.=.+.+.+.|++.+
T Consensus 22 s~e~Ki~Ia~~Ld~l----Gv~~IE~g~p~----~s~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~i 93 (409)
T COG0119 22 SVEEKIRIAKALDDL----GVDYIEAGFPV----ASPGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGVDRI 93 (409)
T ss_pred CHHHHHHHHHHHHHc----CCCEEEEeCCc----CChhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCCCEE
Confidence 788899999999884 99887554332 222221100 0 00111112233345555554
Q ss_pred EeecCcccHHHHhhhcceecccCCccCCH----HHHHHHHhcCCeEE--EeCCCCCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 92 TDVHETVQCEEVGKVADIIQIPAFLCRQT----DLLVAAAKTGKIIN--IKKGQFCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 92 s~~~d~~~~~~l~~~~d~~kIgs~~~~n~----~lL~~~a~~~~PVi--lstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
..+.....+..- +++...-..+. +.++++-..+.++. ..-....+++-....++.+...|...|.|+.
T Consensus 94 ~if~~tSd~h~~------~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~D 167 (409)
T COG0119 94 HIFIATSDLHLR------YKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPD 167 (409)
T ss_pred EEEEcCCHHHHH------HHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEECC
Confidence 443333322211 11111111222 33455667788888 4444444677777777777766777888887
Q ss_pred ecCCCCCCCCCCCchhHHHHHh-cC--CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 166 RGTMFGYNDLIVDPRNLEWMRE-AN--CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~lk~-~~--~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
.+.. ..|.. --.-+..+++ .. ++|.+ +-|-- ..+...-+.+|+..||+ .+|.-
T Consensus 168 TvG~-~~P~~--~~~~i~~l~~~v~~~~~l~~-H~HnD------------------~G~AvANslaAv~aGa~--~v~~T 223 (409)
T COG0119 168 TVGV-ATPNE--VADIIEALKANVPNKVILSV-HCHND------------------LGMAVANSLAAVEAGAD--QVEGT 223 (409)
T ss_pred CcCc-cCHHH--HHHHHHHHHHhCCCCCeEEE-EecCC------------------cchHHHHHHHHHHcCCc--EEEEe
Confidence 7653 22221 1245666776 54 77777 55531 22335557789999998 88876
Q ss_pred CC
Q 022892 243 DD 244 (290)
Q Consensus 243 ~t 244 (290)
+.
T Consensus 224 vn 225 (409)
T COG0119 224 VN 225 (409)
T ss_pred cc
Confidence 64
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=87.28 E-value=27 Score=33.03 Aligned_cols=176 Identities=18% Similarity=0.198 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh----hc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK----VA 107 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~----~~ 107 (290)
.+++++.+++.|++.+.+++.-- .. ...+-.+...-...++.++++.++||+----+-...+.+.+ ..
T Consensus 27 n~e~~~avi~AAe~~~sPvIl~~-~~-------~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~Gf 98 (283)
T PRK07998 27 NLETTISILNAIERSGLPNFIQI-AP-------TNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGF 98 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEC-cH-------hHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999877532 21 11121233344557888999999999876655555655544 22
Q ss_pred ceecc-cCCcc--CCHHHHHH----HHhcCCeEEEeCCCCC-----------CHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 108 DIIQI-PAFLC--RQTDLLVA----AAKTGKIINIKKGQFC-----------ASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 108 d~~kI-gs~~~--~n~~lL~~----~a~~~~PVilstG~~~-----------tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
+-+-+ ||..- .|..+-++ +-..|.||=..-|.-+ ...+-..|.+.+...|-+ ..-+--|+.
T Consensus 99 tSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD-~LAvaiGt~ 177 (283)
T PRK07998 99 TSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCD-MLAVSIGNV 177 (283)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcC-eeehhcccc
Confidence 32222 33322 35544433 4456888722222210 123455567777777754 444445554
Q ss_pred CC-CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 170 FG-YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 170 ~~-y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
.+ |....+|+..+..+++ .++|+++ |+- | |.. ....+.|+..|++.+
T Consensus 178 HG~Y~~p~l~~~~l~~I~~~~~vPLVl---HGg-----------S----G~~---~e~~~~ai~~Gi~Ki 226 (283)
T PRK07998 178 HGLEDIPRIDIPLLKRIAEVSPVPLVI---HGG-----------S----GIP---PEILRSFVNYKVAKV 226 (283)
T ss_pred ccCCCCCCcCHHHHHHHHhhCCCCEEE---eCC-----------C----CCC---HHHHHHHHHcCCcEE
Confidence 33 6445578888888888 7899887 752 1 211 233467899998754
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=87.26 E-value=2.8 Score=37.56 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCC
Q 022892 141 CASSVMVNSAEKVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGG 211 (290)
Q Consensus 141 ~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~ 211 (290)
...++++.+++.+...|.+.+.++-..+.. .... +.++ ...+...|+.+..|.+.+.++.
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~----------- 132 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS----------- 132 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-----------
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-----------
Confidence 378999999998888898888887766531 0110 0011 1223333446777877666652
Q ss_pred CccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 022892 212 GVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIA 272 (290)
Q Consensus 212 ~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~ 272 (290)
.-..+.+..++..+..+|++.+.| +|..-.+.|++..++++.+++..
T Consensus 133 ----~~~~~~~~~~~~~~~~~g~~~i~l----------~Dt~G~~~P~~v~~lv~~~~~~~ 179 (237)
T PF00682_consen 133 ----RTDPEELLELAEALAEAGADIIYL----------ADTVGIMTPEDVAELVRALREAL 179 (237)
T ss_dssp ----GSSHHHHHHHHHHHHHHT-SEEEE----------EETTS-S-HHHHHHHHHHHHHHS
T ss_pred ----cccHHHHHHHHHHHHHcCCeEEEe----------eCccCCcCHHHHHHHHHHHHHhc
Confidence 012456667788888899984322 68888999999999999988753
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.21 E-value=8.6 Score=37.31 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=83.2
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE---
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--- 92 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--- 92 (290)
++.+++-.++ ++..+.+++ .|+|+|+...-.-.-|.....| . .+.|++..+++++.|..+..
T Consensus 6 ~~ell~pag~-------l~~l~~ai~----~GADaVY~G~~~~~~R~~a~nf---s-~~~l~e~i~~ah~~gkk~~V~~N 70 (347)
T COG0826 6 KPELLAPAGN-------LEDLKAAIA----AGADAVYIGEKEFGLRRRALNF---S-VEDLAEAVELAHSAGKKVYVAVN 70 (347)
T ss_pred cceeecCCCC-------HHHHHHHHH----cCCCEEEeCCcccccccccccC---C-HHHHHHHHHHHHHcCCeEEEEec
Confidence 3455555544 455555555 5999998863211012211112 2 46699999999999996554
Q ss_pred eecCcccHHHHhhh-cceecccCCc--cCCHHHHHHHHhcC--CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 022892 93 DVHETVQCEEVGKV-ADIIQIPAFL--CRQTDLLVAAAKTG--KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 93 ~~~d~~~~~~l~~~-~d~~kIgs~~--~~n~~lL~~~a~~~--~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
+.+.....+.+.+. -....+|..- +...-++..+...+ .|+++|+=+..+ .+. .+++..+.|... +++-|-
T Consensus 71 ~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v~--N~~-~~~f~~~~G~~r-vVl~rE 146 (347)
T COG0826 71 TLLHNDELETLERYLDRLVELGVDAVIVADPGLIMLARERGPDLPIHVSTQANVT--NAE-TAKFWKELGAKR-VVLPRE 146 (347)
T ss_pred cccccchhhHHHHHHHHHHHcCCCEEEEcCHHHHHHHHHhCCCCcEEEeeeEecC--CHH-HHHHHHHcCCEE-EEeCcc
Confidence 34444444433332 2333444443 36777888888777 999999987744 332 345667778543 333332
Q ss_pred CCCCCCCCCCCchhHHHHHh
Q 022892 168 TMFGYNDLIVDPRNLEWMRE 187 (290)
Q Consensus 168 s~~~y~~~~~dL~~i~~lk~ 187 (290)
+.+.-|..+++
T Consensus 147 ---------ls~~ei~~i~~ 157 (347)
T COG0826 147 ---------LSLEEIKEIKE 157 (347)
T ss_pred ---------CCHHHHHHHHH
Confidence 34455555555
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.14 E-value=16 Score=33.54 Aligned_cols=154 Identities=10% Similarity=0.022 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCcc--CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLC--RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~--~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
+....+.+...+.|+..+=-- ++-. .....++.+.+....+-+..-.-+...+++.|++
T Consensus 20 ~~k~~i~~~L~~~Gv~~iEvg-------------------~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~ 80 (268)
T cd07940 20 EEKLEIARQLDELGVDVIEAG-------------------FPAASPGDFEAVKRIAREVLNAEICGLARAVKKDIDAAAE 80 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEe-------------------CCCCCHHHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHH
Confidence 455556666777787765321 1111 0123445555432222222222236777777776
Q ss_pred HHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccH
Q 022892 152 KVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELI 222 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~ 222 (290)
.....|-+.+.++-..+-. ++.. +.++ ...+...++.|+.|.|.+.++. .-..+++
T Consensus 81 ~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~---------------~~~~~~~ 145 (268)
T cd07940 81 ALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDAT---------------RTDLDFL 145 (268)
T ss_pred hCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCC---------------CCCHHHH
Confidence 4333335556665544310 0111 1111 1222333445777877555541 0124556
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 223 PCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 223 ~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
..++..+..+|++.+. ++|..-.+.|+++.++++.+++.
T Consensus 146 ~~~~~~~~~~G~~~i~----------l~DT~G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 146 IEVVEAAIEAGATTIN----------IPDTVGYLTPEEFGELIKKLKEN 184 (268)
T ss_pred HHHHHHHHHcCCCEEE----------ECCCCCCCCHHHHHHHHHHHHHh
Confidence 6777778889998432 27999999999999999999874
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=87.08 E-value=6.3 Score=37.26 Aligned_cols=113 Identities=9% Similarity=0.065 Sum_probs=0.0
Q ss_pred cCCcc-CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH---HHHHHHhcCCcEEEe-----
Q 022892 23 PNVIE-SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI---LEKVKIAYDIPIVTD----- 93 (290)
Q Consensus 23 pcsie-n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~---L~~~~~~~Gi~~~s~----- 93 (290)
|-++| ||-.+++..++-++. |+.-||.. --.+.+++-++. +.++|+.+|+.+=.|
T Consensus 79 PV~lHLDHg~~~e~i~~ai~~----GftSVMiD------------gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg 142 (288)
T TIGR00167 79 PVALHLDHGASEEDCAQAVKA----GFSSVMID------------GSHEPFEENIELTKKVVERAHKMGVSVEAELGTLG 142 (288)
T ss_pred cEEEECCCCCCHHHHHHHHHc----CCCEEEec------------CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecc
Q ss_pred --------------ecCcccHHHHhh--hcceecccCCcc--------C--CHHHHHHHHh-cCCeEEEeCCCCCCHHHH
Q 022892 94 --------------VHETVQCEEVGK--VADIIQIPAFLC--------R--QTDLLVAAAK-TGKIINIKKGQFCASSVM 146 (290)
Q Consensus 94 --------------~~d~~~~~~l~~--~~d~~kIgs~~~--------~--n~~lL~~~a~-~~~PVilstG~~~tl~e~ 146 (290)
--||+++..+.+ .+|++.|+-++. . |+++|+++.+ .+.|++|-=|....-+++
T Consensus 143 g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~ 222 (288)
T TIGR00167 143 GEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEI 222 (288)
T ss_pred CccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHH
Q ss_pred HHHHH
Q 022892 147 VNSAE 151 (290)
Q Consensus 147 ~~Ave 151 (290)
..|++
T Consensus 223 ~~ai~ 227 (288)
T TIGR00167 223 KKAIS 227 (288)
T ss_pred HHHHH
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.01 E-value=32 Score=34.05 Aligned_cols=181 Identities=16% Similarity=0.129 Sum_probs=97.4
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEEe
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVTD 93 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s~ 93 (290)
+|+++|.-.-.. |.+.+++.+++|.+ .+..+++-. +. .|. ..|.+.++++.+. .+.+++..
T Consensus 171 ~~p~L~vALD~~-~~~~A~~i~~~l~~----~~~~~iKvG-~~--------L~~----~~G~~iVk~Lr~~~~~~~I~~D 232 (391)
T PRK13307 171 DPPYLQVALDLP-DLEEVERVLSQLPK----SDHIIIEAG-TP--------LIK----KFGLEVISKIREVRPDAFIVAD 232 (391)
T ss_pred ccceEEEecCCC-CHHHHHHHHHhccc----ccceEEEEC-HH--------HHH----HhCHHHHHHHHHhCCCCeEEEE
Confidence 455777766542 66666666666654 233333332 11 022 2445555555444 34566663
Q ss_pred --ecCcccH--HHHhh-hcceecccCCccC--CHHHHHHHHhcCCeEEE-eCCCCCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 94 --VHETVQC--EEVGK-VADIIQIPAFLCR--QTDLLVAAAKTGKIINI-KKGQFCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 94 --~~d~~~~--~~l~~-~~d~~kIgs~~~~--n~~lL~~~a~~~~PVil-stG~~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
++|+... +.+.+ .+|++-|=+.... -...++.+-+.|+-+++ --+.. |+.|....+ .. ..+++++|
T Consensus 233 LK~~Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~-tp~e~i~~l----~~-~vD~Vllh 306 (391)
T PRK13307 233 LKTLDTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVE-DPVKLLESL----KV-KPDVVELH 306 (391)
T ss_pred ecccChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCC-CHHHHHHHh----hC-CCCEEEEc
Confidence 4555544 22333 5777766654322 22355666677887777 55555 555544433 22 45788999
Q ss_pred ecCCCCCCCCCCCchhHHHHHh--cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 166 RGTMFGYNDLIVDPRNLEWMRE--ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~lk~--~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
++...+... --+..+..+|+ .+++|.+|..=+ ..-...++.+||+++++=+-+
T Consensus 307 t~vdp~~~~--~~~~kI~~ikk~~~~~~I~VdGGI~-----------------------~eti~~l~~aGADivVVGsaI 361 (391)
T PRK13307 307 RGIDEEGTE--HAWGNIKEIKKAGGKILVAVAGGVR-----------------------VENVEEALKAGADILVVGRAI 361 (391)
T ss_pred cccCCCccc--chHHHHHHHHHhCCCCcEEEECCcC-----------------------HHHHHHHHHcCCCEEEEeHHH
Confidence 865422111 12245556666 367787753211 233556778999988888765
Q ss_pred C
Q 022892 244 D 244 (290)
Q Consensus 244 t 244 (290)
+
T Consensus 362 f 362 (391)
T PRK13307 362 T 362 (391)
T ss_pred h
Confidence 4
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=86.96 E-value=23 Score=34.32 Aligned_cols=122 Identities=13% Similarity=0.070 Sum_probs=73.1
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------CCCC-CCCC--chhHHHHHhcCC
Q 022892 120 TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF------GYND-LIVD--PRNLEWMREANC 190 (290)
Q Consensus 120 ~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~------~y~~-~~~d--L~~i~~lk~~~~ 190 (290)
.+.++.+.+...+.-+..-..+..++++.|++ .|-+.+.++-..|.. +-.. +.++ ...+...|+.|+
T Consensus 52 ~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~----~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~ 127 (365)
T TIGR02660 52 RAVIRAIVALGLPARLMAWCRARDADIEAAAR----CGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGL 127 (365)
T ss_pred HHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHc----CCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCC
Confidence 35567777654433333222237788776654 566677777765521 1111 1111 123333344577
Q ss_pred CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 191 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 191 pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
.|.|.+-.+. .-..+++..++.++..+||+.+ .++|-.-.+.|.++.++++.+++
T Consensus 128 ~v~~~~ed~~---------------r~~~~~l~~~~~~~~~~Ga~~i----------~l~DT~G~~~P~~v~~lv~~l~~ 182 (365)
T TIGR02660 128 FVSVGGEDAS---------------RADPDFLVELAEVAAEAGADRF----------RFADTVGILDPFSTYELVRALRQ 182 (365)
T ss_pred EEEEeecCCC---------------CCCHHHHHHHHHHHHHcCcCEE----------EEcccCCCCCHHHHHHHHHHHHH
Confidence 7777544431 0124677788888899999832 24898899999999999999875
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=86.80 E-value=13 Score=36.63 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=26.4
Q ss_pred CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 022892 119 QTDLLVAAAKTGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 119 n~~lL~~~a~~~~PVilstG~~~tl~e~~~A 149 (290)
...+-+++++.|.|.++||..+.++||+..+
T Consensus 104 E~a~ArAA~~~gi~~~lSt~ss~slEeIa~~ 134 (383)
T cd03332 104 ELATARAAAELGVPYILSTASSSSIEDVAAA 134 (383)
T ss_pred HHHHHHHHHHcCCCeeecCCCCCCHHHHHhh
Confidence 3456788889999999999888899999876
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.75 E-value=7.8 Score=39.20 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE-eecCcccHHHHhh-h
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT-DVHETVQCEEVGK-V 106 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s-~~~d~~~~~~l~~-~ 106 (290)
+...+.++.|.+ .|+++|....-. +.+ ...++.++++.+++ +++++. .+-..+.+..+.+ .
T Consensus 226 ~~~~~~a~~Lv~----aGvd~i~~D~a~-----------~~~-~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aG 289 (479)
T PRK07807 226 GDVAAKARALLE----AGVDVLVVDTAH-----------GHQ-EKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAG 289 (479)
T ss_pred hhHHHHHHHHHH----hCCCEEEEeccC-----------Ccc-HHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcC
Confidence 345677777776 499887764322 222 35566677777777 799999 9999999999988 7
Q ss_pred cceecccCCc----c---------CCHHHHHHHHh----cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 107 ADIIQIPAFL----C---------RQTDLLVAAAK----TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 107 ~d~~kIgs~~----~---------~n~~lL~~~a~----~~~PVilstG~~~tl~e~~~Ave 151 (290)
+|+++||=+. . -++..+..++. .+.|||--=|.. +..++..|..
T Consensus 290 ad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~-~~~~~~~al~ 350 (479)
T PRK07807 290 ADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVR-HPRDVALALA 350 (479)
T ss_pred CCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCC-CHHHHHHHHH
Confidence 9999954333 2 24445555543 589999999999 9999888765
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=86.71 E-value=0.87 Score=41.13 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=59.0
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHH---------------HHhh-h
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCE---------------EVGK-V 106 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~---------------~l~~-~ 106 (290)
|.+.|++.|...-+.- +..+.. +. ...+.+..+.+.|++.|++++.+++ +...+ ...+ .
T Consensus 85 A~~~GAd~vd~vi~~~-~~~~~~-~~--~~~~~i~~v~~~~~~~gl~vIlE~~-l~~~~~~~~~~~~~I~~a~ria~e~G 159 (236)
T PF01791_consen 85 AIRLGADEVDVVINYG-ALGSGN-ED--EVIEEIAAVVEECHKYGLKVILEPY-LRGEEVADEKKPDLIARAARIAAELG 159 (236)
T ss_dssp HHHTT-SEEEEEEEHH-HHHTTH-HH--HHHHHHHHHHHHHHTSEEEEEEEEC-ECHHHBSSTTHHHHHHHHHHHHHHTT
T ss_pred HHHcCCceeeeecccc-cccccc-HH--HHHHHHHHHHHHHhcCCcEEEEEEe-cCchhhcccccHHHHHHHHHHHHHhC
Confidence 3446999988876651 000000 10 0135677788999999999999944 33333 1223 4
Q ss_pred cceecccCC-----ccCCHHHHHH-HHhcCCe----EEEeCCCCCCHHHHHHHHH
Q 022892 107 ADIIQIPAF-----LCRQTDLLVA-AAKTGKI----INIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 107 ~d~~kIgs~-----~~~n~~lL~~-~a~~~~P----VilstG~~~tl~e~~~Ave 151 (290)
+|++|.... +..+..+++. +...+.| |.++=|. +.++....++
T Consensus 160 aD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi--~~~~~~~~l~ 212 (236)
T PF01791_consen 160 ADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGI--DAEDFLRTLE 212 (236)
T ss_dssp -SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSS--SHHHHHHSHH
T ss_pred CCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCC--ChHHHHHHHH
Confidence 899999877 1123344444 5567889 9999997 3444444333
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=86.70 E-value=10 Score=34.82 Aligned_cols=108 Identities=12% Similarity=0.170 Sum_probs=67.5
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec---------CcccHHH----Hhh-hcc
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH---------ETVQCEE----VGK-VAD 108 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~---------d~~~~~~----l~~-~~d 108 (290)
+-+.|++.|....+.. + ... + ...+.++.+.+.|+++|++++...+ +.+.+.. ..+ .+|
T Consensus 99 al~~Ga~~v~~~~~~g-~-~~~--~---~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GAD 171 (258)
T TIGR01949 99 AIRMGADAVSIHVNVG-S-DTE--W---EQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGAD 171 (258)
T ss_pred HHHCCCCEEEEEEecC-C-chH--H---HHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCC
Confidence 3346888776654432 1 000 1 1124577788999999999988433 1222222 223 599
Q ss_pred eecccCCccCCHHHHHHHHh-cCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCC
Q 022892 109 IIQIPAFLCRQTDLLVAAAK-TGKIINIKKGQFC-ASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~-~~~PVilstG~~~-tl~e~~~Ave~i~~~Gn~ 159 (290)
++|++.. ...+.++.+.+ .+.||...=|... |.++...-++.+...|-.
T Consensus 172 yikt~~~--~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~ 222 (258)
T TIGR01949 172 IVKTPYT--GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAA 222 (258)
T ss_pred EEeccCC--CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9999743 46778888765 6899988755542 567776666666777875
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=86.69 E-value=5 Score=37.68 Aligned_cols=111 Identities=12% Similarity=0.061 Sum_probs=64.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s 92 (290)
++++-||+|.+.- |....+++|++ |+++|+|+|+.. .|+.| .+.-++-+.+.+++|+.. ++|++-
T Consensus 67 ~g~~pvi~gv~~~-~t~~ai~~a~~----A~~~Gad~v~v~--------pP~y~-~~~~~~l~~~f~~ia~a~~~lpv~i 132 (294)
T TIGR02313 67 AGRIPFAPGTGAL-NHDETLELTKF----AEEAGADAAMVI--------VPYYN-KPNQEALYDHFAEVADAVPDFPIII 132 (294)
T ss_pred CCCCcEEEECCcc-hHHHHHHHHHH----HHHcCCCEEEEc--------CccCC-CCCHHHHHHHHHHHHHhccCCCEEE
Confidence 4678899999862 55555555555 556799998764 12322 233134566788888888 888873
Q ss_pred --------eecCcccHHHHh-h--hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCC
Q 022892 93 --------DVHETVQCEEVG-K--VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF 140 (290)
Q Consensus 93 --------~~~d~~~~~~l~-~--~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~ 140 (290)
..++++.+..+. + .+-.+|-.+.++.++.-+ ....+..+.+-.|..
T Consensus 133 Yn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss~d~~~~~~~--~~~~~~~~~v~~G~d 189 (294)
T TIGR02313 133 YNIPGRAAQEIAPKTMARLRKDCPNIVGAKESNKDFEHLNHL--FLEAGRDFLLFCGIE 189 (294)
T ss_pred EeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHH--HHhcCCCeEEEEcch
Confidence 233455555554 2 355667777666544322 233344555555544
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.65 E-value=6.9 Score=36.97 Aligned_cols=76 Identities=9% Similarity=0.070 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCcEEEee-------------------cCcccHH-HHhh-hcceecccCCcc---------CCHHHHHH
Q 022892 76 LKILEKVKIAYDIPIVTDV-------------------HETVQCE-EVGK-VADIIQIPAFLC---------RQTDLLVA 125 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~-------------------~d~~~~~-~l~~-~~d~~kIgs~~~---------~n~~lL~~ 125 (290)
-+++.++|+.+|+.+=.|+ -||+++. |+.+ .+|++.|+=+++ -|+++|++
T Consensus 117 T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~ 196 (284)
T PRK09195 117 VKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLEN 196 (284)
T ss_pred HHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHH
Confidence 3357788888887765443 2344444 4444 699988877765 47788888
Q ss_pred HHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 126 AAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 126 ~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
+.+ ++.|++|-=|....-+++..|++
T Consensus 197 I~~~~~vPLVLHGgSG~~~e~~~~ai~ 223 (284)
T PRK09195 197 IRQWVNIPLVLHGASGLPTKDIQQTIK 223 (284)
T ss_pred HHHHhCCCeEEecCCCCCHHHHHHHHH
Confidence 764 58898887777655566666643
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.63 E-value=32 Score=33.20 Aligned_cols=188 Identities=16% Similarity=0.106 Sum_probs=96.7
Q ss_pred CchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHH
Q 022892 2 DPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEK 81 (290)
Q Consensus 2 ~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~ 81 (290)
|.||.+. .+...-| ++|+-.- -.+=++|.+++++.|-..+..- ++ .++...+. +
T Consensus 26 dlst~~~-~~~l~~P-~~inAM~--------t~iN~~LA~~a~~~G~~~~~~k-~~--------------~e~~~~~~-r 79 (326)
T PRK05458 26 DTSVTLG-PRTFKLP-VVPANMQ--------TIIDEKIAEWLAENGYFYIMHR-FD--------------PEARIPFI-K 79 (326)
T ss_pred ccceEEC-CcEecCc-EEEeccc--------chhHHHHHHHHHHcCCEEEEec-CC--------------HHHHHHHH-H
Confidence 5566665 3334455 5554442 1444555566777785433321 22 12333333 3
Q ss_pred HHHhcCCcEEEee----cCcccHHHHhh-hc--ceecccCCccCC---HHHHHHHHhc-C-CeEEEeCCCCCCHHHHHHH
Q 022892 82 VKIAYDIPIVTDV----HETVQCEEVGK-VA--DIIQIPAFLCRQ---TDLLVAAAKT-G-KIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 82 ~~~~~Gi~~~s~~----~d~~~~~~l~~-~~--d~~kIgs~~~~n---~~lL~~~a~~-~-~PVilstG~~~tl~e~~~A 149 (290)
..+..|+.+...+ -+.+.++.+.+ .+ |++.|-+.+=.+ .++++++-+. + .||+.++ .. |.++.+.+
T Consensus 80 ~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~-V~-t~e~a~~l 157 (326)
T PRK05458 80 DMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGN-VG-TPEAVREL 157 (326)
T ss_pred hccccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEe-cC-CHHHHHHH
Confidence 3344466443333 33344445544 34 899885544322 2345666443 3 5566543 33 88888876
Q ss_pred HHHHHHcCCCcEEEEe------ecCC--CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcc
Q 022892 150 AEKVRLAGNPNVMVCE------RGTM--FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 220 (290)
Q Consensus 150 ve~i~~~Gn~~i~L~~------~gs~--~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~ 220 (290)
.+ .|-+- +.+. |.+. .+-...+..+.++..+++ .++||+.|.-=.. +
T Consensus 158 ~~----aGad~-i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~----------------~--- 213 (326)
T PRK05458 158 EN----AGADA-TKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRT----------------H--- 213 (326)
T ss_pred HH----cCcCE-EEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCC----------------H---
Confidence 54 56533 3322 1111 011111124556777777 7899987532111 1
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 221 LIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 221 ~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
..+. -|.++||+++|+=..|+
T Consensus 214 --~Di~-KaLa~GA~aV~vG~~~~ 234 (326)
T PRK05458 214 --GDIA-KSIRFGATMVMIGSLFA 234 (326)
T ss_pred --HHHH-HHHHhCCCEEEechhhc
Confidence 2344 56888999999998887
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.46 E-value=9.7 Score=35.14 Aligned_cols=158 Identities=13% Similarity=0.104 Sum_probs=88.2
Q ss_pred EEEeecCcccHHHHhh-hccee--cccCCc---cCCHHHHHHHH---hcCCeEEEeCCCC-CCHHHHHHHHHHHHHcCCC
Q 022892 90 IVTDVHETVQCEEVGK-VADII--QIPAFL---CRQTDLLVAAA---KTGKIINIKKGQF-CASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~-~~d~~--kIgs~~---~~n~~lL~~~a---~~~~PVilstG~~-~tl~e~~~Ave~i~~~Gn~ 159 (290)
.+.+|-|.+++..... .+|++ |=|++- -.-...++++- ...+||=---|-. ..+.++..|+.-....|-+
T Consensus 3 lLvSvr~~eEA~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvD 82 (238)
T PRK02227 3 LLVSVRNLEEALEALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGAD 82 (238)
T ss_pred eeeccCCHHHHHHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCC
Confidence 4667777777776655 57776 223331 23334445432 2336766655632 2567788887777777765
Q ss_pred cEEEEeecCCCCCCCCCCCchhHH----HHHhc--C---CCEEEeCCCC-CCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 022892 160 NVMVCERGTMFGYNDLIVDPRNLE----WMREA--N---CPVVADVTHS-LQQPAGKKLDGGGVASGGLRELIPCIARTA 229 (290)
Q Consensus 160 ~i~L~~~gs~~~y~~~~~dL~~i~----~lk~~--~---~pV~~D~sHs-~~~~~~~~~~~~~~~~~g~~~~~~~~a~aA 229 (290)
. +..|- |+..+..-.+..+. ..+.+ + ++|+| +||. .+.+. - ..+...+
T Consensus 83 y---VKvGl-~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~y-aD~~r~~~~~------------~-----~~l~~~a 140 (238)
T PRK02227 83 Y---VKVGL-YGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGY-ADAHRVGSVS------------P-----LSLPAIA 140 (238)
T ss_pred E---EEEcC-CCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEe-cccccccCCC------------h-----HHHHHHH
Confidence 3 33443 11111111112221 12221 2 35666 7764 11010 1 3455566
Q ss_pred HHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 022892 230 IAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIA 272 (290)
Q Consensus 230 va~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~ 272 (290)
.+.|++|+||.+-.-..+++-|| +++++|+++++..|..-
T Consensus 141 ~~aGf~g~MlDTa~Kdg~~Lfd~---l~~~~L~~Fv~~ar~~G 180 (238)
T PRK02227 141 ADAGFDGAMLDTAIKDGKSLFDH---MDEEELAEFVAEARSHG 180 (238)
T ss_pred HHcCCCEEEEecccCCCcchHhh---CCHHHHHHHHHHHHHcc
Confidence 78999999997765555556675 78999999999999753
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=86.45 E-value=21 Score=30.95 Aligned_cols=175 Identities=14% Similarity=0.091 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHH---h
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEV---G 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l---~ 104 (290)
|.+...+.++.+.+ +|++.+=+..-+ .-. +++. ..+++.++++++....++..-++-....+++ .
T Consensus 9 ~~~~~~~~~~~~~~----~g~d~i~~~~~D--g~~----~~~~--~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~ 76 (210)
T TIGR01163 9 DFARLGEEVKAVEE----AGADWIHVDVMD--GHF----VPNL--TFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFA 76 (210)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEcCCC--CCC----CCCc--ccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHH
Confidence 55666677777666 699987765211 000 0111 1345555555554566643322222223333 3
Q ss_pred h-hcceecccCCccCC-HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCc---
Q 022892 105 K-VADIIQIPAFLCRQ-TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP--- 179 (290)
Q Consensus 105 ~-~~d~~kIgs~~~~n-~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL--- 179 (290)
+ .+|.+++....... ...++.+-+.+..+++-.... +..|...++. .+.+. +++.+.. .+..-...+.
T Consensus 77 ~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~-t~~e~~~~~~----~~~d~-i~~~~~~-~g~tg~~~~~~~~ 149 (210)
T TIGR01163 77 EAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPA-TPLEFLEYVL----PDVDL-VLLMSVN-PGFGGQKFIPDTL 149 (210)
T ss_pred HcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCC-CCHHHHHHHH----hhCCE-EEEEEEc-CCCCcccccHHHH
Confidence 3 48888887654322 245566666777666655555 5555444431 23333 4432211 1111111222
Q ss_pred hhHHHHHh-c-----CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 180 RNLEWMRE-A-----NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 180 ~~i~~lk~-~-----~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
..+..+++ . ++||.++. ++ + +.-...+++.||+|+++=+.++
T Consensus 150 ~~i~~i~~~~~~~~~~~~i~v~G--GI----------------~-----~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 150 EKIREVRKMIDENGLSILIEVDG--GV----------------N-----DDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred HHHHHHHHHHHhcCCCceEEEEC--Cc----------------C-----HHHHHHHHHcCCCEEEEChHHh
Confidence 33444443 2 26776632 11 1 3334456789999999887774
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.42 E-value=20 Score=33.30 Aligned_cols=118 Identities=10% Similarity=0.132 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCC------ChhHHHHHHHHHHHhcCCcEEEeecCcccHHH
Q 022892 29 EEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGP------GMVEGLKILEKVKIAYDIPIVTDVHETVQCEE 102 (290)
Q Consensus 29 ~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~------~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~ 102 (290)
.+..++.-++-+.+|.++|+..|-...|+- | |... .+.+|+++..+.+.+..+..+.|++|..-+.-
T Consensus 91 r~~aleiM~KaI~LA~dLGIRtIQLAGYDV------Y-YE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMDtpfm~s 163 (287)
T COG3623 91 RQQALEIMEKAIQLAQDLGIRTIQLAGYDV------Y-YEEADEETRQRFIEGLKWAVELAARAQVMLAVEIMDTPFMNS 163 (287)
T ss_pred HHHHHHHHHHHHHHHHHhCceeEeecccee------e-eccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeecccHHHHH
Confidence 577899999999999999999888877763 1 1111 12489999999999999999999999865554
Q ss_pred HhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 103 VGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 103 l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
+.. .+...-..+.|-+.==.--|+++.|-+.+.-=..-|-++|+-+|=--.
T Consensus 164 Isk----------------~~~~~~~I~sP~f~vYPDiGNlsaw~ndv~~El~lG~~~I~aiHlKDT 214 (287)
T COG3623 164 ISK----------------WLKYDKYINSPWFTVYPDIGNLSAWNNDVQSELQLGIDKIVAIHLKDT 214 (287)
T ss_pred HHH----------------HHHHHHHhCCCcEEecCCcccHhhhhhhHHHHHHcCcCceEEEEeccc
Confidence 432 122233456676666666679999999988666778899988886543
|
|
| >PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria | Back alignment and domain information |
|---|
Probab=86.36 E-value=2.1 Score=40.21 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=68.8
Q ss_pred hhHHhhhcCCC-CeEEEEccCCccCH------------HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCC
Q 022892 5 TALFNQLKAAE-PFFLLAGPNVIESE------------EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPG 71 (290)
Q Consensus 5 ~~~~~~i~~~~-~~~iIAgpcsien~------------~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~ 71 (290)
++-|++|.+.. ..++|||.-. |+. .......+.++..|+++||....--+| ||.-.| . .
T Consensus 76 ~~af~kIkekRpDIl~ia~~~~-EDp~~i~~~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sf---prhms~--~--~ 147 (275)
T PF12683_consen 76 AEAFRKIKEKRPDILLIAGEPH-EDPEVISSAADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSF---PRHMSY--E--L 147 (275)
T ss_dssp HHHHHHHHHH-TTSEEEESS---S-HHHHHHHSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEE---TTGGGS--H--H
T ss_pred HHHHHHHHhcCCCeEEEcCCCc-CCHHHHhhccCeEeccchhhccHHHHHHHHHcCCceEEEEec---hhhcch--H--H
Confidence 46788888643 4778887542 342 235678899999999999986554444 454332 1 1
Q ss_pred hhHHHHHHHHHHHhcCCcEEEe----ecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCC-eEEEeCCCCCCHHHH
Q 022892 72 MVEGLKILEKVKIAYDIPIVTD----VHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGK-IINIKKGQFCASSVM 146 (290)
Q Consensus 72 ~~~~l~~L~~~~~~~Gi~~~s~----~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~-PVilstG~~~tl~e~ 146 (290)
+..-...+++.|+++||.|.-. |.+...+.-..+. -..+.| +++.+-|+ --++.|.-+++-.-+
T Consensus 148 l~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~gv~gaqqf---------IlE~vp--~~i~kYGkdtaff~TN~a~~epll 216 (275)
T PF12683_consen 148 LARRRDIMEEACKDLGIKFVEVTAPDPTSDVGVAGAQQF---------ILEDVP--KWIKKYGKDTAFFCTNDAMTEPLL 216 (275)
T ss_dssp HHHHHHHHHHHHHHCT--EEEEEE---SSTCHHHHHHHH---------HHHHHH--HHHHHH-S--EEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcHHHHHH---------HHHHHH--HHHHHhCCceeEEecCccccHHHH
Confidence 2355677999999999999874 3333333221110 012222 45666666 456777766444444
Q ss_pred HHHHH
Q 022892 147 VNSAE 151 (290)
Q Consensus 147 ~~Ave 151 (290)
+++++
T Consensus 217 k~~~~ 221 (275)
T PF12683_consen 217 KQALE 221 (275)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=86.30 E-value=25 Score=31.71 Aligned_cols=129 Identities=16% Similarity=0.113 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEE-eecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVT-DVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s-~~~d~~~~~~l~~ 105 (290)
+.+..++.++.|.+ .|++++=.. |.. ..+++.+++++++++ +.+-+ |+.+.++++...+
T Consensus 25 ~~~~a~~i~~al~~----~Gi~~iEit-l~~--------------~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~ 85 (212)
T PRK05718 25 KLEDAVPLAKALVA----GGLPVLEVT-LRT--------------PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIE 85 (212)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEe-cCC--------------ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHH
Confidence 55778888888887 589887553 321 245555555555554 44444 9999999998877
Q ss_pred -hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC-CchhHH
Q 022892 106 -VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV-DPRNLE 183 (290)
Q Consensus 106 -~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~-dL~~i~ 183 (290)
..+|+-.+. .|.++++.+-+.+.|++ -|.. |+.|+..|. +.|.+-+-+ ||...+ .+.-+.
T Consensus 86 aGA~FivsP~---~~~~vi~~a~~~~i~~i--PG~~-TptEi~~a~----~~Ga~~vKl--------FPa~~~gg~~~lk 147 (212)
T PRK05718 86 AGAQFIVSPG---LTPPLLKAAQEGPIPLI--PGVS-TPSELMLGM----ELGLRTFKF--------FPAEASGGVKMLK 147 (212)
T ss_pred cCCCEEECCC---CCHHHHHHHHHcCCCEe--CCCC-CHHHHHHHH----HCCCCEEEE--------ccchhccCHHHHH
Confidence 799988886 44588888888887766 4656 999988764 467765555 233222 345566
Q ss_pred HHHh-c-CCCEE
Q 022892 184 WMRE-A-NCPVV 193 (290)
Q Consensus 184 ~lk~-~-~~pV~ 193 (290)
.|+. + ++++.
T Consensus 148 ~l~~p~p~~~~~ 159 (212)
T PRK05718 148 ALAGPFPDVRFC 159 (212)
T ss_pred HHhccCCCCeEE
Confidence 6666 4 45654
|
|
| >PRK15447 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=86.24 E-value=11 Score=35.69 Aligned_cols=121 Identities=10% Similarity=0.022 Sum_probs=72.1
Q ss_pred HcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee----cCcccHHHHhhhcceecccCCccCCH
Q 022892 45 KVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV----HETVQCEEVGKVADIIQIPAFLCRQT 120 (290)
Q Consensus 45 ~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~----~d~~~~~~l~~~~d~~kIgs~~~~n~ 120 (290)
+.|||+|+...=.-.-|. .| . .+.+++..+.+++.|..+.-+. +.+...+.+.+.++.. ...-.+.|.
T Consensus 26 ~~gaDaVY~g~~~~~~R~---~f---~-~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~-~~~v~v~d~ 97 (301)
T PRK15447 26 DSPVDIVYLGETVCSKRR---EL---K-VGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENG-EFLVEANDL 97 (301)
T ss_pred cCCCCEEEECCccCCCcc---CC---C-HHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcC-CCEEEEeCH
Confidence 359999988621100233 13 2 5789999999999998876533 2244555554433321 112235788
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHH
Q 022892 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMR 186 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk 186 (290)
..+..+.+.+.|++.++.+..+=. .+++.+...|-..++| ..++++.-|..|.
T Consensus 98 g~l~~~~e~~~~l~~d~~lni~N~---~a~~~l~~~G~~rv~l----------s~ELsl~eI~~i~ 150 (301)
T PRK15447 98 GAVRLLAERGLPFVAGPALNCYNA---ATLALLARLGATRWCM----------PVELSRDWLANLL 150 (301)
T ss_pred HHHHHHHhcCCCEEEecccccCCH---HHHHHHHHcCCcEEEE----------CCcCCHHHHHHHH
Confidence 887777777999999999863222 3455566666555444 1235666666664
|
|
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=86.15 E-value=11 Score=35.28 Aligned_cols=108 Identities=15% Similarity=0.164 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc------------CCHHH---HHHHHh-cCCeEEEeC-
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC------------RQTDL---LVAAAK-TGKIINIKK- 137 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~------------~n~~l---L~~~a~-~~~PVilst- 137 (290)
+..|++..++-...++.+.||..++..+++ .+|++-+|+... +=.++ .+++.+ .+.|+++--
T Consensus 4 ~~~~~~~~~~g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~Dm 83 (263)
T TIGR00222 4 TLSLLQKKKQEEKIVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDL 83 (263)
T ss_pred HHHHHHHHhCCCcEEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCC
Confidence 344555545545566889999999999988 699999997743 11122 344544 455655521
Q ss_pred ---CCCCCHHHHHH-HHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEE
Q 022892 138 ---GQFCASSVMVN-SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV 193 (290)
Q Consensus 138 ---G~~~tl~e~~~-Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~ 193 (290)
+.. ++++... |...+++.|- +.+=+|-|. +. ...+..+.+.++||.
T Consensus 84 Pf~sy~-~~e~a~~na~rl~~eaGa-~aVkiEgg~------~~--~~~i~~l~~~gIpV~ 133 (263)
T TIGR00222 84 PFMSYA-TPEQALKNAARVMQETGA-NAVKLEGGE------WL--VETVQMLTERGVPVV 133 (263)
T ss_pred CcCCCC-CHHHHHHHHHHHHHHhCC-eEEEEcCcH------hH--HHHHHHHHHCCCCEE
Confidence 222 3555433 4444443554 455555442 11 133455555789987
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=86.07 E-value=4.9 Score=37.91 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=41.6
Q ss_pred cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCC-CCCC---CCCChHHHHH
Q 022892 188 ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP-VDGP---TQWPLRNLEE 263 (290)
Q Consensus 188 ~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~-~D~~---~sl~p~~l~~ 263 (290)
..+||++|.+.+ |....+....+.....|+.|+.||-...|.|.- ..+. ..++++|+.+
T Consensus 77 ~~~Pv~~D~d~G-----------------g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~ 139 (285)
T TIGR02320 77 TTKPIILDGDTG-----------------GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCG 139 (285)
T ss_pred cCCCEEEecCCC-----------------CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHH
Confidence 478999998876 223333444555678999999999887666532 2332 3456665555
Q ss_pred HHHHHHHH
Q 022892 264 LLEELVAI 271 (290)
Q Consensus 264 lv~~ir~~ 271 (290)
-++..+..
T Consensus 140 kI~Aa~~a 147 (285)
T TIGR02320 140 KIRAGKDA 147 (285)
T ss_pred HHHHHHHh
Confidence 55444433
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=86.05 E-value=15 Score=38.60 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=73.8
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcCC-CEEEeCCCCCC
Q 022892 132 IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREANC-PVVADVTHSLQ 201 (290)
Q Consensus 132 PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~~-pV~~D~sHs~~ 201 (290)
|++..-+.. +.++++.|++.+.....+.|++.-..|.. .+.. +.++ ...+...|+.++ .|.|++--.-
T Consensus 158 ~~i~a~~ra-~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~- 235 (632)
T PLN02321 158 PVICGLSRC-NKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAG- 235 (632)
T ss_pred eeeeeehhc-cHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCC-
Confidence 777777777 89999999987665555678887666521 1111 1111 122333344556 4777553220
Q ss_pred CCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 202 QPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
.-.++++..++.++..+||+-+ .++|---.+.|.++.++++.+++
T Consensus 236 --------------rtd~d~l~~~~~~a~~aGa~~I----------~L~DTvG~~~P~~v~~li~~l~~ 280 (632)
T PLN02321 236 --------------RSDPEFLYRILGEVIKAGATTL----------NIPDTVGYTLPSEFGQLIADIKA 280 (632)
T ss_pred --------------CCCHHHHHHHHHHHHHcCCCEE----------EecccccCCCHHHHHHHHHHHHH
Confidence 0125677888889999999722 23888889999999999999875
|
|
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=86.05 E-value=6.2 Score=36.98 Aligned_cols=128 Identities=19% Similarity=0.213 Sum_probs=61.7
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCC----------CCChhHHHHHHHHHHH
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFR----------GPGMVEGLKILEKVKI 84 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~----------g~~~~~~l~~L~~~~~ 84 (290)
+..-||||.|.-+-.-..-++-++|++ .|+-.|- |..+...++ |++.+...+ +-+.|+
T Consensus 80 ~~tPViaGv~atDP~~~~~~fl~~lk~----~Gf~GV~-------NfPTvgliDG~fR~~LEe~Gmgy~~EVe-mi~~A~ 147 (268)
T PF09370_consen 80 KDTPVIAGVCATDPFRDMDRFLDELKE----LGFSGVQ-------NFPTVGLIDGQFRQNLEETGMGYDREVE-MIRKAH 147 (268)
T ss_dssp SSS-EEEEE-TT-TT--HHHHHHHHHH----HT-SEEE-------E-S-GGG--HHHHHHHHHTT--HHHHHH-HHHHHH
T ss_pred cCCCEEEEecCcCCCCcHHHHHHHHHH----hCCceEE-------ECCcceeeccHHHHHHHhcCCCHHHHHH-HHHHHH
Confidence 335699999986544444555666666 4976653 222222221 233222333 556679
Q ss_pred hcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH---cCCCc
Q 022892 85 AYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL---AGNPN 160 (290)
Q Consensus 85 ~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~---~Gn~~ 160 (290)
+.|+..+.=+|+++++..+.+ .+|++-+--+..+ +-.+..+|.. |++|...-++.|.+ .=|++
T Consensus 148 ~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~-----------gG~~Ga~~~~--sl~~a~~~~~~i~~aa~~v~~d 214 (268)
T PF09370_consen 148 EKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTT-----------GGSIGAKTAL--SLEEAAERIQEIFDAARAVNPD 214 (268)
T ss_dssp HTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS---------------------S----HHHHHHHHHHHHHHHHCC-TT
T ss_pred HCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccC-----------CCCcCccccC--CHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999988 7888865433221 2234555543 57777666665543 22444
Q ss_pred -EEEEeec
Q 022892 161 -VMVCERG 167 (290)
Q Consensus 161 -i~L~~~g 167 (290)
|+|||-|
T Consensus 215 ii~l~hGG 222 (268)
T PF09370_consen 215 IIVLCHGG 222 (268)
T ss_dssp -EEEEECT
T ss_pred eEEEEeCC
Confidence 6666644
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=86.02 E-value=16 Score=37.03 Aligned_cols=125 Identities=10% Similarity=0.021 Sum_probs=79.3
Q ss_pred HHHHHHHhc-CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----CCC--C-CCCC--chhHHHHHhcCC
Q 022892 121 DLLVAAAKT-GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----GYN--D-LIVD--PRNLEWMREANC 190 (290)
Q Consensus 121 ~lL~~~a~~-~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~--~-~~~d--L~~i~~lk~~~~ 190 (290)
+.++.++.. ..|.+..-... ..+++..|++.+...+.+.|+++-.+|.. .+. . +.++ ...+...++.+.
T Consensus 53 e~v~~i~~~~~~~~i~al~r~-~~~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~ 131 (494)
T TIGR00973 53 EAVQRIARTVKNPRVCGLARC-VEKDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTD 131 (494)
T ss_pred HHHHHHHHhCCCCEEEEEcCC-CHHhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 445555433 33455444444 78999999988776677778887766521 111 1 1111 123334445567
Q ss_pred CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 191 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 191 pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
.|.|++-... .-..+++..++.++..+||+-+ .++|---.+.|.++.++++.+++
T Consensus 132 ~v~f~~Ed~~---------------r~d~~~l~~~~~~~~~~Ga~~i----------~l~DTvG~~~P~~~~~~i~~l~~ 186 (494)
T TIGR00973 132 DVEFSCEDAG---------------RTEIPFLARIVEAAINAGATTI----------NIPDTVGYALPAEYGNLIKGLRE 186 (494)
T ss_pred eEEEEcCCCC---------------CCCHHHHHHHHHHHHHcCCCEE----------EeCCCCCCCCHHHHHHHHHHHHH
Confidence 7888554331 1135677888888899999732 23899999999999999999876
Q ss_pred H
Q 022892 271 I 271 (290)
Q Consensus 271 ~ 271 (290)
-
T Consensus 187 ~ 187 (494)
T TIGR00973 187 N 187 (494)
T ss_pred h
Confidence 3
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PRK15063 isocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.99 E-value=19 Score=36.08 Aligned_cols=167 Identities=16% Similarity=0.108 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
..+-+.|++..++-+...+--++|+-++..+.+ ..+.+.+++..+.... -.+..+.| --|.- +.+++.+.|+
T Consensus 49 ~~~a~kLr~lL~~~~~~~~~Ga~d~~~A~q~~~aGf~AIy~SG~~vAa~~---~~s~~g~P---D~~l~-p~~~v~~~v~ 121 (428)
T PRK15063 49 RRGAEKLWELLHGEPYVNALGALTGNQAVQQVKAGLKAIYLSGWQVAADA---NLAGQMYP---DQSLY-PANSVPAVVK 121 (428)
T ss_pred HHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHhCCCEEEECHHHHhcCc---ccccCCCC---CcccC-CHHHHHHHHH
Confidence 456667888888888777789999999998887 6999999988775411 11345666 23444 8899999988
Q ss_pred HHHHcCC--CcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 022892 152 KVRLAGN--PNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 229 (290)
Q Consensus 152 ~i~~~Gn--~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aA 229 (290)
.|...=. +++.... + .-++ + .+-+||+.|.+-+- +| ..-+..+.+.-
T Consensus 122 ~I~~a~~~~d~~~~~~-~-~~~~----~---------d~~~PIiADaDtGf---------------Gg-~~nv~~~vk~~ 170 (428)
T PRK15063 122 RINNALRRADQIQWSE-G-DKGY----I---------DYFAPIVADAEAGF---------------GG-VLNAFELMKAM 170 (428)
T ss_pred HHHHHHHHhhhHhhhh-c-cccc----c---------cCCCCeEEECCCCC---------------CC-cHHHHHHHHHH
Confidence 7743210 1111100 0 0000 0 12379999998763 23 22244556677
Q ss_pred HHcCCCEEEEeeeCCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 230 IAVGVDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 230 va~GA~G~~IEkH~t~dka~--~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
+.+||.|+-||-...+.|.- -+++.-.+.+++-+=++.+|.....+|.
T Consensus 171 ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~ 220 (428)
T PRK15063 171 IEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGV 220 (428)
T ss_pred HHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCC
Confidence 88999999999775432221 2555556666666666666666665665
|
|
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=85.99 E-value=44 Score=34.23 Aligned_cols=100 Identities=11% Similarity=0.079 Sum_probs=66.2
Q ss_pred HHHHHHhcCCeEEEeCC-----CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEe
Q 022892 122 LLVAAAKTGKIINIKKG-----QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVAD 195 (290)
Q Consensus 122 lL~~~a~~~~PVilstG-----~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D 195 (290)
.++.+-+.+..|-++.- ...+++-+.+.++.+...|-..+.|+..... -+|.. + ..-+..+++ +++||.+
T Consensus 131 ~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~-~~P~~-v-~~li~~l~~~~~v~i~~- 206 (524)
T PRK12344 131 SVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGG-TLPHE-V-AEIVAEVRAAPGVPLGI- 206 (524)
T ss_pred HHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCC-cCHHH-H-HHHHHHHHHhcCCeEEE-
Confidence 44555667888877543 2236777888888888889888888776552 12321 1 245666777 7899998
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCC
Q 022892 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 196 ~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~ 245 (290)
+.|-. +.+...-+.+|+.+||+ .||.-+..
T Consensus 207 H~HND------------------~GlA~ANslaAi~aGa~--~Vd~Tl~G 236 (524)
T PRK12344 207 HAHND------------------SGCAVANSLAAVEAGAR--QVQGTING 236 (524)
T ss_pred EECCC------------------CChHHHHHHHHHHhCCC--EEEEeccc
Confidence 77753 22334557788999998 88877654
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=85.96 E-value=4.7 Score=38.44 Aligned_cols=88 Identities=17% Similarity=0.251 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-
Q 022892 29 EEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK- 105 (290)
Q Consensus 29 ~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~- 105 (290)
.....+.|+.+.+ +|++++... +||....|.|. ..|..++++++..++|++. .+++++++..+.+
T Consensus 148 ~~~~~~~a~~le~----~G~d~i~vh-----~rt~~~~~~G~---a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~ 215 (321)
T PRK10415 148 HRNCVEIAQLAED----CGIQALTIH-----GRTRACLFNGE---AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDY 215 (321)
T ss_pred cchHHHHHHHHHH----hCCCEEEEe-----cCccccccCCC---cChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhc
Confidence 3345677777655 699887543 57655555542 2467888888889999998 8999988888765
Q ss_pred -hcceecccCCccCCHHHHHHHHh
Q 022892 106 -VADIIQIPAFLCRQTDLLVAAAK 128 (290)
Q Consensus 106 -~~d~~kIgs~~~~n~~lL~~~a~ 128 (290)
.+|.+.||-..+.|..+.+++..
T Consensus 216 ~gadgVmiGR~~l~nP~if~~~~~ 239 (321)
T PRK10415 216 TGADALMIGRAAQGRPWIFREIQH 239 (321)
T ss_pred cCCCEEEEChHhhcCChHHHHHHH
Confidence 69999999999999888887754
|
|
| >PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
Probab=85.95 E-value=17 Score=33.00 Aligned_cols=47 Identities=9% Similarity=-0.049 Sum_probs=28.1
Q ss_pred HHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 122 LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 122 lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
+.+.+.+.|..+.+.+-....+.....+...+...+.+++-+|.-..
T Consensus 138 l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~l~~~v~~~~~~~~~D~~ 184 (284)
T PRK13210 138 AVEQAAAAQVMLAVEIMDTPFMNSISKWKKWDKEIDSPWLTVYPDVG 184 (284)
T ss_pred HHHHHHHhCCEEEEEecCccccCCHHHHHHHHHHcCCCceeEEecCC
Confidence 44556677889999885332233333344455555677788876654
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.76 E-value=30 Score=32.10 Aligned_cols=142 Identities=21% Similarity=0.269 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
-.++|++.-+ .|+|=+.|=-.++ ...-+ +--+.++.+.+++.-||+.. -+-+.++++.+-. .+|
T Consensus 32 pVelA~~Y~e----~GADElvFlDItA-----s~~gr----~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGAD 98 (256)
T COG0107 32 PVELAKRYNE----EGADELVFLDITA-----SSEGR----ETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGAD 98 (256)
T ss_pred hHHHHHHHHH----cCCCeEEEEeccc-----ccccc----hhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCC
Confidence 4677777766 4998655432332 10011 34588899999999999877 5677777776655 799
Q ss_pred eecccCCccCCHHHHHHHHhc-CC--------------------eEEEeCCCC---CCHHHHHHHHHHHHHcCCCcEEEE
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT-GK--------------------IINIKKGQF---CASSVMVNSAEKVRLAGNPNVMVC 164 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~-~~--------------------PVilstG~~---~tl~e~~~Ave~i~~~Gn~~i~L~ 164 (290)
-+.|.|.-+.|.+|++++|.. |. -|...+|-- .+.-||...+ .+.|.-.|.|-
T Consensus 99 KVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~---e~~GAGEIlLt 175 (256)
T COG0107 99 KVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEV---EELGAGEILLT 175 (256)
T ss_pred eeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHH---HHcCCceEEEe
Confidence 999999999999999998852 21 233333322 2344555444 45576666553
Q ss_pred e---ecCCCCCCCCCCCchhHHHHHh-cCCCEEE
Q 022892 165 E---RGTMFGYNDLIVDPRNLEWMRE-ANCPVVA 194 (290)
Q Consensus 165 ~---~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~ 194 (290)
- -|+.-+| |+.-+..+++ -++||+.
T Consensus 176 smD~DGtk~Gy-----Dl~l~~~v~~~v~iPvIA 204 (256)
T COG0107 176 SMDRDGTKAGY-----DLELTRAVREAVNIPVIA 204 (256)
T ss_pred eecccccccCc-----CHHHHHHHHHhCCCCEEe
Confidence 2 1233355 5666666777 7899986
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=85.74 E-value=32 Score=32.38 Aligned_cols=178 Identities=12% Similarity=0.148 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh----hc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK----VA 107 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~----~~ 107 (290)
.+++++.+++.|++.+.+++.-- .. .+.. |. +++.-...++.++++..+||+----+-.+.+.+.. .+
T Consensus 27 n~e~~~avi~aAe~~~~Pvii~~-~~---~~~~--~~--~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~ 98 (281)
T PRK06806 27 NMEMVMGAIKAAEELNSPIILQI-AE---VRLN--HS--PLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGF 98 (281)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEc-Cc---chhc--cC--ChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999876532 22 2211 22 22333456778899999999876655555555544 58
Q ss_pred ceecccCCccC---CHHHH----HHHHhcCCeEEEeCCCC--------------CCHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 108 DIIQIPAFLCR---QTDLL----VAAAKTGKIINIKKGQF--------------CASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 108 d~~kIgs~~~~---n~~lL----~~~a~~~~PVilstG~~--------------~tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
+++++-..... |..+- +.+-..|.||-..-|-- -+++|...+ +...|-+.+.+ --
T Consensus 99 tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f---~~~tg~DyLAv-ai 174 (281)
T PRK06806 99 TSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRF---AEETDVDALAV-AI 174 (281)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHH---HHhhCCCEEEE-cc
Confidence 89999888773 33322 22334566664332211 145555444 44567665555 22
Q ss_pred cCCCC-CCC-CCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 167 GTMFG-YND-LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 167 gs~~~-y~~-~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
|+.|+ |+. ..+++..+..+++ .++|++. |+- | |.. ..-...++..|++|+=+=+-
T Consensus 175 G~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~---hG~-----------S----GI~---~e~~~~~i~~G~~kinv~T~ 232 (281)
T PRK06806 175 GNAHGMYNGDPNLRFDRLQEINDVVHIPLVL---HGG-----------S----GIS---PEDFKKCIQHGIRKINVATA 232 (281)
T ss_pred CCCCCCCCCCCccCHHHHHHHHHhcCCCEEE---ECC-----------C----CCC---HHHHHHHHHcCCcEEEEhHH
Confidence 33222 322 4588888888887 7899876 541 1 211 33345578889987765443
|
|
| >PLN02808 alpha-galactosidase | Back alignment and domain information |
|---|
Probab=85.61 E-value=3 Score=41.11 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHH-HHHcCCCEEeccccccC-CCCCcccCC--CCChhHHHHHHHHHHHhcCCcEEE-------ee--
Q 022892 28 SEEHIMRMAKHIKSI-STKVGLPLVFKSSFDKA-NRTSSKSFR--GPGMVEGLKILEKVKIAYDIPIVT-------DV-- 94 (290)
Q Consensus 28 n~~~~le~Ak~L~~~-a~~~G~~~V~~~~~~k~-~rts~~~~~--g~~~~~~l~~L~~~~~~~Gi~~~s-------~~-- 94 (290)
|++.+++.|.+|++. .+++|...|-....+-. .|.+.+.+. .-.+..|++.|.++.++.|+.|-- +.
T Consensus 47 ~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGiy~~~G~~tC~~ 126 (386)
T PLN02808 47 NETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGIYSDAGTLTCSK 126 (386)
T ss_pred CHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEEEecCCccccCC
Confidence 788899999997653 23468777666655532 354333221 011247899999999999998843 11
Q ss_pred cCcc-------cHHHHhh-hcceecccCCccC-------CHHHHHHHHhcCCeEEEeC---CCCCCHHHHH
Q 022892 95 HETV-------QCEEVGK-VADIIQIPAFLCR-------QTDLLVAAAKTGKIINIKK---GQFCASSVMV 147 (290)
Q Consensus 95 ~d~~-------~~~~l~~-~~d~~kIgs~~~~-------n~~lL~~~a~~~~PVilst---G~~~tl~e~~ 147 (290)
..|- +++.+++ .+|++|+-..... -..+-+++.++|+||++|- |.. ++.+|.
T Consensus 127 ~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~~slc~wg~~-~p~~w~ 196 (386)
T PLN02808 127 TMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGRPIFFSLCEWGQE-DPATWA 196 (386)
T ss_pred CCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeEEEecCCCCC-CHHHHH
Confidence 1233 3445566 6999998754321 1135567788999999884 434 555553
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.50 E-value=32 Score=32.52 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=54.7
Q ss_pred cceecccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhH
Q 022892 107 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 182 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i 182 (290)
-.=|.||++++.|.+.++. +-.++.||||..+.. ... |.....=...+
T Consensus 15 ~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~-~~~---------------------------~~~~~~~~~~~ 66 (286)
T PRK06801 15 KHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEV-HFK---------------------------YISLESLVEAV 66 (286)
T ss_pred HCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcc-hhh---------------------------cCCHHHHHHHH
Confidence 4567889999998876654 345788888887665 210 11000001223
Q ss_pred HHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 183 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 183 ~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
..+.+ ..+||.+--||+. . ......|+..|++.+|+
T Consensus 67 ~~~a~~~~vpV~lHlDH~~----------------~-----~e~i~~Ai~~GftSVm~ 103 (286)
T PRK06801 67 KFEAARHDIPVVLNLDHGL----------------H-----FEAVVRALRLGFSSVMF 103 (286)
T ss_pred HHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHhCCcEEEE
Confidence 33444 7899999888973 2 56677889999999888
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.46 E-value=4.8 Score=40.18 Aligned_cols=116 Identities=21% Similarity=0.158 Sum_probs=67.5
Q ss_pred cccHHHHhh-hcceecccCC---ccCCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-eecCC
Q 022892 97 TVQCEEVGK-VADIIQIPAF---LCRQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-ERGTM 169 (290)
Q Consensus 97 ~~~~~~l~~-~~d~~kIgs~---~~~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~-~~gs~ 169 (290)
.+.++.+.+ .+|++-|-+. .....+.++++.+. +.||+..+. .|.++...+++ .|-+-|-+. +.|+.
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v--~t~~~a~~l~~----aGad~i~vg~g~G~~ 299 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNV--ATAEQAKALID----AGADGLRVGIGPGSI 299 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeC--CCHHHHHHHHH----hCCCEEEECCCCCcC
Confidence 345555555 5888887663 22344566776554 689999666 45888888765 466544332 33321
Q ss_pred --------CCCCCCCCCchhHHHH----HhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 170 --------FGYNDLIVDPRNLEWM----REANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 170 --------~~y~~~~~dL~~i~~l----k~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
.++| .+.++... +++++||+.|.-=- + + ..++ .|.++||+.+
T Consensus 300 ~~t~~~~~~g~p----~~~~i~~~~~~~~~~~vpviadGGi~---------------~-~-----~di~-kAla~GA~~V 353 (450)
T TIGR01302 300 CTTRIVAGVGVP----QITAVYDVAEYAAQSGIPVIADGGIR---------------Y-S-----GDIV-KALAAGADAV 353 (450)
T ss_pred CccceecCCCcc----HHHHHHHHHHHHhhcCCeEEEeCCCC---------------C-H-----HHHH-HHHHcCCCEE
Confidence 1222 23344333 23689998752211 1 1 2334 5799999999
Q ss_pred EEeeeCC
Q 022892 238 FMEVHDD 244 (290)
Q Consensus 238 ~IEkH~t 244 (290)
|+=.-|+
T Consensus 354 ~~G~~~a 360 (450)
T TIGR01302 354 MLGSLLA 360 (450)
T ss_pred EECchhh
Confidence 9987665
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=85.28 E-value=25 Score=34.07 Aligned_cols=149 Identities=10% Similarity=0.084 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccC--CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCR--QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~--n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
+.-..+.+...+.|++.+-- |+.-.. ..+.++.+.+.+.+.-+..-..+..++++.|++
T Consensus 22 ~~k~~ia~~L~~~Gv~~IEv-------------------G~p~~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~ 82 (363)
T TIGR02090 22 EQKVEIARKLDELGVDVIEA-------------------GFPIASEGEFEAIKKISQEGLNAEICSLARALKKDIDKAID 82 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEE-------------------eCCCCChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHH
Confidence 44455666667778766532 222221 124456666554433333322347888777754
Q ss_pred HHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccH
Q 022892 152 KVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELI 222 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~ 222 (290)
.|-+.+.++-..|.. .+.. +.++ ...+...|+.|+.|.+....+. .-..+++
T Consensus 83 ----~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~---------------r~~~~~l 143 (363)
T TIGR02090 83 ----CGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDAT---------------RTDIDFL 143 (363)
T ss_pred ----cCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecC---------------CCCHHHH
Confidence 466677777666521 1111 1111 1233344456777766433321 0124667
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 223 PCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 223 ~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
..++.++..+|++.+. ++|-.-.++|+++.++++.+++
T Consensus 144 ~~~~~~~~~~g~~~i~----------l~DT~G~~~P~~v~~li~~l~~ 181 (363)
T TIGR02090 144 IKVFKRAEEAGADRIN----------IADTVGVLTPQKMEELIKKLKE 181 (363)
T ss_pred HHHHHHHHhCCCCEEE----------EeCCCCccCHHHHHHHHHHHhc
Confidence 7778888999998432 2688889999999999999885
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=85.19 E-value=8.2 Score=36.05 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=43.5
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.+. |....+++|++..+ +|++++... .|+ |....-++-+.+.+++++..++|++-
T Consensus 67 ~~~~pvi~gv~~--~t~~~i~~a~~a~~----~Gad~v~~~--------pP~-y~~~~~~~i~~~f~~v~~~~~~pi~l 130 (289)
T cd00951 67 AGRVPVLAGAGY--GTATAIAYAQAAEK----AGADGILLL--------PPY-LTEAPQEGLYAHVEAVCKSTDLGVIV 130 (289)
T ss_pred CCCCCEEEecCC--CHHHHHHHHHHHHH----hCCCEEEEC--------CCC-CCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 456789999885 77777777766655 699998763 122 22233234466788888888999875
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=85.05 E-value=17 Score=35.54 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 022892 121 DLLVAAAKTGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~~~tl~e~~~A 149 (290)
.+-+++++.|.|.++||..+.++||+..+
T Consensus 91 a~AraA~~~gi~~~lSt~ss~slEeva~~ 119 (367)
T PLN02493 91 ATARAASAAGTIMTLSSWATSSVEEVAST 119 (367)
T ss_pred HHHHHHHHcCCCeeecCcccCCHHHHHhc
Confidence 56688899999999999999999999876
|
|
| >PRK09875 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.99 E-value=7.4 Score=36.79 Aligned_cols=104 Identities=9% Similarity=0.067 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHH-hcCCeEEEeCCCCC----------
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAA-KTGKIINIKKGQFC---------- 141 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a-~~~~PVilstG~~~---------- 141 (290)
+...++|++++ +.|...+.++-.. +.=+|..+|+++| ++|..|+.+||---
T Consensus 34 ~~~~~el~~~~-~~Gg~tiVd~T~~-----------------g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~~~p~~~~~ 95 (292)
T PRK09875 34 AFICQEMNDLM-TRGVRNVIEMTNR-----------------YMGRNAQFMLDVMRETGINVVACTGYYQDAFFPEHVAT 95 (292)
T ss_pred HHHHHHHHHHH-HhCCCeEEecCCC-----------------ccCcCHHHHHHHHHHhCCcEEEcCcCCCCccCCHHHhc
Confidence 45566777764 5587777665422 2228889999987 58999999999642
Q ss_pred -CHHHHHHHHH-----HHHHcCCCcEEEEeecCCCC-C-CCCCCCchhHHHHHh-cCCCEEE
Q 022892 142 -ASSVMVNSAE-----KVRLAGNPNVMVCERGTMFG-Y-NDLIVDPRNLEWMRE-ANCPVVA 194 (290)
Q Consensus 142 -tl~e~~~Ave-----~i~~~Gn~~i~L~~~gs~~~-y-~~~~~dL~~i~~lk~-~~~pV~~ 194 (290)
+.+++.+-+- -+...|-.--+|-++|++++ . +.+.-=+++...... +|+||.+
T Consensus 96 ~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~ 157 (292)
T PRK09875 96 RSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPIST 157 (292)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEE
Confidence 3333322211 12112222233449999764 2 222111333333333 8999965
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=84.92 E-value=23 Score=33.12 Aligned_cols=64 Identities=9% Similarity=0.139 Sum_probs=39.4
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIV 91 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~ 91 (290)
++++-||+|.+.. +.+.++++|+. ++++|+|+|... .|+ |....-++-+.+.++++++. ++|++
T Consensus 68 ~~~~pvi~gv~~~-~t~~~i~la~~----a~~~Gad~v~v~--------~P~-y~~~~~~~i~~yf~~v~~~~~~lpv~ 132 (290)
T TIGR00683 68 KDQIALIAQVGSV-NLKEAVELGKY----ATELGYDCLSAV--------TPF-YYKFSFPEIKHYYDTIIAETGGLNMI 132 (290)
T ss_pred CCCCcEEEecCCC-CHHHHHHHHHH----HHHhCCCEEEEe--------CCc-CCCCCHHHHHHHHHHHHhhCCCCCEE
Confidence 4567899998753 55555665555 445799987763 122 22222134566677887776 68876
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=84.91 E-value=16 Score=35.80 Aligned_cols=101 Identities=17% Similarity=0.257 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH-H---------------------HHHHcCCCcEEEEeecC---------
Q 022892 120 TDLLVAAAKTGKIINIKKGQFCASSVMVNSA-E---------------------KVRLAGNPNVMVCERGT--------- 168 (290)
Q Consensus 120 ~~lL~~~a~~~~PVilstG~~~tl~e~~~Av-e---------------------~i~~~Gn~~i~L~~~gs--------- 168 (290)
..+-+++++.|.|..+||..+.++||+..+. . .....|-.-|+|.--..
T Consensus 100 ~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~ 179 (367)
T TIGR02708 100 VATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDV 179 (367)
T ss_pred HHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhh
Confidence 4567888999999999999999999998763 1 12344543344422100
Q ss_pred --CC--C-----------------C------CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcc
Q 022892 169 --MF--G-----------------Y------NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 220 (290)
Q Consensus 169 --~~--~-----------------y------~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~ 220 (290)
.| + + ....++...|.++++ .++||++= ++ +.
T Consensus 180 r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~~~~PvivK---Gv----------------~~-- 238 (367)
T TIGR02708 180 RNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGYSGLPVYVK---GP----------------QC-- 238 (367)
T ss_pred hcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHhcCCCEEEe---CC----------------CC--
Confidence 00 0 0 011344567788888 78999882 12 11
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeC
Q 022892 221 LIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 221 ~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
...+..++..|++|+++--|-
T Consensus 239 --~eda~~a~~~Gvd~I~VS~HG 259 (367)
T TIGR02708 239 --PEDADRALKAGASGIWVTNHG 259 (367)
T ss_pred --HHHHHHHHHcCcCEEEECCcC
Confidence 567888899999999999997
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.91 E-value=34 Score=32.07 Aligned_cols=205 Identities=13% Similarity=0.026 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEEee--cCcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVTDV--HETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s~~--~d~~~~~~l~ 104 (290)
+.+..++.++.+. +.|+..|.++.-+. + .+ . .+.+..+.+..++ .|+.+..++ .+++.++.+.
T Consensus 71 s~eei~~~~~~~~----~~g~~~i~l~gG~~-~-----~~---~-~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk 136 (323)
T PRK07094 71 SPEEILECAKKAY----ELGYRTIVLQSGED-P-----YY---T-DEKIADIIKEIKKELDVAITLSLGERSYEEYKAWK 136 (323)
T ss_pred CHHHHHHHHHHHH----HCCCCEEEEecCCC-C-----CC---C-HHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHH
Confidence 3445555555444 46888777764321 1 01 1 2445554444444 677665444 5567777777
Q ss_pred h-hcceecccCCcc------------CCH---HHHHHHHhcCCeEE--EeCCC-CCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 105 K-VADIIQIPAFLC------------RQT---DLLVAAAKTGKIIN--IKKGQ-FCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 105 ~-~~d~~kIgs~~~------------~n~---~lL~~~a~~~~PVi--lstG~-~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
+ .++.+.+|-... +.. ..++.+-+.|.+|. +=.|. .-|.+++.+.++.+++-+-+.+.+.-
T Consensus 137 ~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~ 216 (323)
T PRK07094 137 EAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGP 216 (323)
T ss_pred HcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeec
Confidence 7 577776654322 111 22334444565432 22343 34788888888888776544333322
Q ss_pred e----cCCC-CCCCC--CCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCE
Q 022892 166 R----GTMF-GYNDL--IVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 236 (290)
Q Consensus 166 ~----gs~~-~y~~~--~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G 236 (290)
- ||-+ ..+.. .-.++.+..+|. + +..+-. ++ ++ ..-+ +.....+...||++
T Consensus 217 ~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~-~~-~~-------------~~~~-----~~~~~~~l~~Gan~ 276 (323)
T PRK07094 217 FIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPA-TT-AL-------------GTLN-----PDGREKGLKAGANV 276 (323)
T ss_pred cccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcc-cC-Cc-------------cccC-----chhHHHHHHcCCce
Confidence 2 2210 11110 111344444443 2 111110 00 10 0011 33345678899999
Q ss_pred EEEeeeCCCCCCC---CCCCCCCChHHHHHHHH
Q 022892 237 VFMEVHDDPLNAP---VDGPTQWPLRNLEELLE 266 (290)
Q Consensus 237 ~~IEkH~t~dka~---~D~~~sl~p~~l~~lv~ 266 (290)
+|.+.++.-.|.. =|++.+.+.+.......
T Consensus 277 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 309 (323)
T PRK07094 277 VMPNLTPGEYRKLYSLYPGKICTGEEAAECREC 309 (323)
T ss_pred ecCCCCchhhCcccccCCCCCCCCccHHHHHHH
Confidence 9987766555543 28888876665544433
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=84.86 E-value=36 Score=32.25 Aligned_cols=139 Identities=9% Similarity=0.046 Sum_probs=74.8
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC-Ccc--------------cCCCCChhH
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT-SSK--------------SFRGPGMVE 74 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt-s~~--------------~~~g~~~~~ 74 (290)
.+...+|+.+=||+.+- |- +..+++.+ +|+-+|.-.+...+||. .+. .|...|++.
T Consensus 8 Gl~l~NPv~~AsG~~~~-~~----e~~~~~~~----~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~ 78 (310)
T PRK02506 8 GFKFDNCLMNAAGVYCM-TK----EELEEVEA----SAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDY 78 (310)
T ss_pred CEECCCCCEeCCCCCCC-CH----HHHHHHHH----cCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHH
Confidence 56678888877788841 22 22333433 57665544444433543 111 133344456
Q ss_pred HHHHHHHHHHh-cCCcEEEeecC--cccHHHHh----h--hcceecc--c------CCccC-CH----HHHHHHH-hcCC
Q 022892 75 GLKILEKVKIA-YDIPIVTDVHE--TVQCEEVG----K--VADIIQI--P------AFLCR-QT----DLLVAAA-KTGK 131 (290)
Q Consensus 75 ~l~~L~~~~~~-~Gi~~~s~~~d--~~~~~~l~----~--~~d~~kI--g------s~~~~-n~----~lL~~~a-~~~~ 131 (290)
.++.+++..+. .+.|++.++.- ++....+. + .+|++-+ . .+.+. +. ++++++- .+.+
T Consensus 79 ~~~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~ 158 (310)
T PRK02506 79 YLDYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTK 158 (310)
T ss_pred HHHHHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCC
Confidence 66667665544 36888877643 22222222 1 1455433 1 11121 22 3445543 3578
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 132 IINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 132 PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
||++|-....+..++..+++.....|
T Consensus 159 Pv~vKlsp~~~~~~~a~~~~~~~~~g 184 (310)
T PRK02506 159 PLGVKLPPYFDIVHFDQAAAIFNKFP 184 (310)
T ss_pred ccEEecCCCCCHHHHHHHHHHhCcCc
Confidence 99999999878888888876554433
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.82 E-value=6 Score=39.24 Aligned_cols=121 Identities=17% Similarity=0.039 Sum_probs=67.8
Q ss_pred cccHHHHhh-hcceecccCCccCC---HHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEe-----
Q 022892 97 TVQCEEVGK-VADIIQIPAFLCRQ---TDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCE----- 165 (290)
Q Consensus 97 ~~~~~~l~~-~~d~~kIgs~~~~n---~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~----- 165 (290)
.+.++.+.+ .+|++.|-+..=.+ .++++++-+. +.+|++.+-. |.++.+.+++ .|-+-|.+--
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~--T~e~a~~l~~----aGaD~I~vG~g~Gs~ 228 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIV--TKEAALDLIS----VGADCLKVGIGPGSI 228 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecC--CHHHHHHHHH----cCCCEEEECCCCCcC
Confidence 366777766 79999965544322 2456666543 3566666553 6888888765 4654444211
Q ss_pred ecCCCCCCCCCCCchhHHHHHh----cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 166 RGTMFGYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~lk~----~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
|++......-.-++.++..+++ +++||+.|.-=.. +.-...|.++||+++|+=.
T Consensus 229 c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~----------------------~~Di~KALalGA~aVmvGs 286 (404)
T PRK06843 229 CTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRF----------------------SGDVVKAIAAGADSVMIGN 286 (404)
T ss_pred CcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCC----------------------HHHHHHHHHcCCCEEEEcc
Confidence 2221000000113445544333 5799988633211 2234467999999999988
Q ss_pred eCCC
Q 022892 242 HDDP 245 (290)
Q Consensus 242 H~t~ 245 (290)
-|+-
T Consensus 287 ~~ag 290 (404)
T PRK06843 287 LFAG 290 (404)
T ss_pred eeee
Confidence 7765
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=84.76 E-value=15 Score=34.10 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeecCCC----CCC--C-CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCC
Q 022892 141 CASSVMVNSAEKVRLAGNPNVMVCERGTMF----GYN--D-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGG 211 (290)
Q Consensus 141 ~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~--~-~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~ 211 (290)
++.++++.|++ .|-+.|.++-..|.. +.. . +.++ ...+...|+.|+.|.+....+.
T Consensus 72 ~~~~di~~a~~----~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~----------- 136 (262)
T cd07948 72 CHMDDARIAVE----TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSF----------- 136 (262)
T ss_pred CCHHHHHHHHH----cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC-----------
Confidence 38888888865 477778888877621 111 1 1111 1222333445788777544442
Q ss_pred CccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 212 GVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 212 ~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
.-..+.+..++..+..+|++.+ . ++|..-.+.|++..++++.+++.
T Consensus 137 ----r~~~~~l~~~~~~~~~~g~~~i----~------l~Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 137 ----RSDLVDLLRVYRAVDKLGVNRV----G------IADTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred ----CCCHHHHHHHHHHHHHcCCCEE----E------ECCcCCCCCHHHHHHHHHHHHHh
Confidence 0123556677778888899832 2 27888899999999999999864
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=84.75 E-value=2.7 Score=41.21 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=49.7
Q ss_pred HHHHHH-HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cC-CCEEEeC
Q 022892 120 TDLLVA-AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADV 196 (290)
Q Consensus 120 ~~lL~~-~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~-~pV~~D~ 196 (290)
..+++. ..+.|.-+.+-... ++++++++++ .|.+++.+|.-+++ .-...|+..+..+.+ .| ++|++|.
T Consensus 108 ~~~~~~~l~~~gv~v~~~d~~--d~~~l~~~l~-----~~t~~v~~EspsNP--~l~v~Dl~~i~~~a~~~g~~~~vVDn 178 (386)
T PF01053_consen 108 YRLLEELLPRFGVEVTFVDPT--DLEALEAALR-----PNTKLVFLESPSNP--TLEVPDLEAIAKLAKEHGDILVVVDN 178 (386)
T ss_dssp HHHHHHCHHHTTSEEEEESTT--SHHHHHHHHC-----TTEEEEEEESSBTT--TTB---HHHHHHHHHHTTT-EEEEEC
T ss_pred hhhhhhhhcccCcEEEEeCch--hHHHHHhhcc-----ccceEEEEEcCCCc--ccccccHHHHHHHHHHhCCceEEeec
Confidence 355654 66778887766552 6888888764 37789999988762 335689999998876 87 9999998
Q ss_pred CCC
Q 022892 197 THS 199 (290)
Q Consensus 197 sHs 199 (290)
+-+
T Consensus 179 T~a 181 (386)
T PF01053_consen 179 TFA 181 (386)
T ss_dssp TTT
T ss_pred ccc
Confidence 876
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >TIGR01064 pyruv_kin pyruvate kinase | Back alignment and domain information |
|---|
Probab=84.70 E-value=8.7 Score=38.80 Aligned_cols=124 Identities=14% Similarity=0.149 Sum_probs=79.8
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC---CcEEEeecCcccHHHHhh---hcceecccCCc
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD---IPIVTDVHETVQCEEVGK---VADIIQIPAFL 116 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G---i~~~s~~~d~~~~~~l~~---~~d~~kIgs~~ 116 (290)
+.+.|+|.|....-+ -.+.+.+++++..+.| +.++.-+-++..++-+.+ ..|.+.+|..|
T Consensus 180 ~~~~~~d~I~lskV~--------------sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi~iG~gD 245 (473)
T TIGR01064 180 GVEQGVDMVAASFVR--------------TAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGIMVARGD 245 (473)
T ss_pred HHHCCCCEEEECCCC--------------CHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcEEEchHH
Confidence 345688887764222 1467888998887754 788898888888877776 36899999987
Q ss_pred cC-----------CHHHHHHHHhcCCeEEEeCCC--------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC
Q 022892 117 CR-----------QTDLLVAAAKTGKIINIKKGQ--------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 117 ~~-----------n~~lL~~~a~~~~PVilstG~--------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~ 177 (290)
+. +..++.++.+.|+|+++.|-| ..|-.|+..+.+.+. .|-+-++|.--+..-.||-
T Consensus 246 L~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~-~G~d~v~ls~eta~G~yP~--- 321 (473)
T TIGR01064 246 LGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAIL-DGTDAVMLSGETAKGKYPV--- 321 (473)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHH-cCCCEEEEcchhhcCCCHH---
Confidence 72 234556677889999998833 123345555555443 5766566644433223765
Q ss_pred CchhHHHHH
Q 022892 178 DPRNLEWMR 186 (290)
Q Consensus 178 dL~~i~~lk 186 (290)
.++.+|+
T Consensus 322 --~~v~~m~ 328 (473)
T TIGR01064 322 --EAVKMMA 328 (473)
T ss_pred --HHHHHHH
Confidence 4555554
|
This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=84.67 E-value=25 Score=31.22 Aligned_cols=52 Identities=19% Similarity=0.116 Sum_probs=36.7
Q ss_pred cceecccCCcc------CCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 107 ADIIQIPAFLC------RQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 107 ~d~~kIgs~~~------~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
++.+-+-..+. .|.++++++.+ .+.||+..-|.. +.+++..+.+ .|-.-+++
T Consensus 160 a~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~-~~~di~~~~~----~Ga~gv~v 218 (234)
T cd04732 160 VKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVS-SLDDIKALKE----LGVAGVIV 218 (234)
T ss_pred CCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCC-CHHHHHHHHH----CCCCEEEE
Confidence 66665554432 46788888765 589999999999 9999887654 36555554
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=84.58 E-value=11 Score=35.72 Aligned_cols=72 Identities=10% Similarity=0.013 Sum_probs=55.0
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCC-------ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHH
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAF-------LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~-------~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~A 149 (290)
+.+..++.|+.++..+.+.+.+..+.+ .+|++.+=++ ...+..|+.++.. .+.||+..-|.. +.+++..+
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~-~~~~~~~a 179 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIA-DGRGMAAA 179 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCC-CHHHHHHH
Confidence 344446669999999999888888877 6999987221 3346788888764 579999999998 99888877
Q ss_pred HH
Q 022892 150 AE 151 (290)
Q Consensus 150 ve 151 (290)
..
T Consensus 180 l~ 181 (307)
T TIGR03151 180 FA 181 (307)
T ss_pred HH
Confidence 64
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=84.51 E-value=3.2 Score=38.70 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=76.1
Q ss_pred HhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEecc-cc---ccCCCCCc-------ccCCCCCh-hHH
Q 022892 8 FNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKS-SF---DKANRTSS-------KSFRGPGM-VEG 75 (290)
Q Consensus 8 ~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~-~~---~k~~rts~-------~~~~g~~~-~~~ 75 (290)
+..+...-.+-|.+-... +.+...++|+.+.+ +|++++... ++ ..+.|+.. ..+.|..+ .-.
T Consensus 149 v~~vr~~~~~pv~vKi~~--~~~~~~~~a~~l~~----~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~ 222 (300)
T TIGR01037 149 VKAVKDKTDVPVFAKLSP--NVTDITEIAKAAEE----AGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIA 222 (300)
T ss_pred HHHHHHhcCCCEEEECCC--ChhhHHHHHHHHHH----cCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHH
Confidence 344433222345555443 55566777776665 699987532 11 10011110 11222111 124
Q ss_pred HHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHH
Q 022892 76 LKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMV 147 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~ 147 (290)
+++++++++..++|++. -+++++++..+.. .+|.++||...+.+..+.+.+.+-=.-..-..|.. +++|+.
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~-~~~e~~ 296 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFT-SIEELI 296 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCCC-CHHHHh
Confidence 67788888888999997 7888888887755 79999999999988776655433111222234444 555543
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=84.34 E-value=30 Score=32.65 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=52.1
Q ss_pred cceecccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhH
Q 022892 107 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 182 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i 182 (290)
-.=|.||++++.|...++. +-..+.||||..... +. . +.| ++. + ...+
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~-~~----------~----------~~g----~~~--~-~~~~ 66 (283)
T PRK07998 15 EKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPT-NA----------Q----------LSG----YDY--I-YEIV 66 (283)
T ss_pred HCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHh-HH----------h----------hCC----HHH--H-HHHH
Confidence 4457888898888876644 345688888876543 11 0 011 110 0 1123
Q ss_pred HHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 183 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 183 ~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
..+.+ +++||.+--||+. . ......|+.+|.+.+|+
T Consensus 67 ~~~A~~~~vPV~lHLDH~~----------------~-----~e~i~~Ai~~GftSVM~ 103 (283)
T PRK07998 67 KRHADKMDVPVSLHLDHGK----------------T-----FEDVKQAVRAGFTSVMI 103 (283)
T ss_pred HHHHHHCCCCEEEECcCCC----------------C-----HHHHHHHHHcCCCEEEE
Confidence 33444 7889998788873 2 45566788999998888
|
|
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=84.33 E-value=38 Score=33.00 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=68.4
Q ss_pred cceecccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhH
Q 022892 107 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 182 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i 182 (290)
-.=|.||++++.|.+.++. +-..+.||||..... +. .+ .| +.. + ...+
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~-~~-------~~-------------~g----~~~--~-~~~v 66 (347)
T PRK13399 15 ENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRG-AR-------KY-------------AG----DAM--L-RHMV 66 (347)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcc-hh-------hh-------------CC----HHH--H-HHHH
Confidence 4557888888888876544 445788888877665 21 10 01 000 0 1233
Q ss_pred HHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe-eeCCCCCCCCCCCCCCChH
Q 022892 183 EWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME-VHDDPLNAPVDGPTQWPLR 259 (290)
Q Consensus 183 ~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE-kH~t~dka~~D~~~sl~p~ 259 (290)
..+.+ . .+||.+--||+. . ......|+.+|...+||- +|. +|++..++.+
T Consensus 67 ~~~ae~~~~VPVaLHLDHg~----------------~-----~e~i~~Ai~~GFtSVMiDgS~l------~~~~~~~~~e 119 (347)
T PRK13399 67 LAAAEMYPDIPICLHQDHGN----------------S-----PATCQSAIRSGFTSVMMDGSLL------ADGKTPASYD 119 (347)
T ss_pred HHHHHhcCCCcEEEECCCCC----------------C-----HHHHHHHHhcCCCEEEEeCCCC------CCCCCccCHH
Confidence 34444 5 599999889983 2 566788999999999998 554 4555566555
Q ss_pred HHHHHHHHHHHHHH
Q 022892 260 NLEELLEELVAIAK 273 (290)
Q Consensus 260 ~l~~lv~~ir~~~~ 273 (290)
|==++.+++-+...
T Consensus 120 eNI~~Trevve~Ah 133 (347)
T PRK13399 120 YNVDVTRRVTEMAH 133 (347)
T ss_pred HHHHHHHHHHHHHH
Confidence 54444444444433
|
|
| >PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional | Back alignment and domain information |
|---|
Probab=84.31 E-value=38 Score=32.63 Aligned_cols=156 Identities=14% Similarity=0.090 Sum_probs=89.8
Q ss_pred hhH--Hhhhc-CCCCeEEEEccCCccCHH---HHHHHHHHH----H----HHHHHcCCCEEeccccccCCCCCcccCCCC
Q 022892 5 TAL--FNQLK-AAEPFFLLAGPNVIESEE---HIMRMAKHI----K----SISTKVGLPLVFKSSFDKANRTSSKSFRGP 70 (290)
Q Consensus 5 ~~~--~~~i~-~~~~~~iIAgpcsien~~---~~le~Ak~L----~----~~a~~~G~~~V~~~~~~k~~rts~~~~~g~ 70 (290)
|.| |+-=+ .-+|+.|-.++|-....+ ...+..+.+ . +..+++|+|+|-...-. +.+.... .
T Consensus 33 ~vlpf~r~e~~~~n~p~ia~~v~D~~~~~~~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s----~dp~~~d-~ 107 (319)
T PRK04452 33 TALPFYHFEGPMPNPPVIAMEVFDMPPEDWPEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLIS----TDPNGKD-K 107 (319)
T ss_pred ccccccccCCCCCCCCeEEEEEecCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCC----CCccccc-c
Confidence 445 54333 356666666776543333 334444443 2 22336789987654211 1111000 1
Q ss_pred ChhHHHHH-HHHHHHhcCCcEEEeec-----CcccHHHHhhhcc-e-ecccCCccCCHH-HHHHHHhcCCeEEEeCCCCC
Q 022892 71 GMVEGLKI-LEKVKIAYDIPIVTDVH-----ETVQCEEVGKVAD-I-IQIPAFLCRQTD-LLVAAAKTGKIINIKKGQFC 141 (290)
Q Consensus 71 ~~~~~l~~-L~~~~~~~Gi~~~s~~~-----d~~~~~~l~~~~d-~-~kIgs~~~~n~~-lL~~~a~~~~PVilstG~~~ 141 (290)
+ .+.+.+ ++++.+..++|++.... |++.++...+.+. - .-|.|-+..|+. ++..+.+.+.||+..+..
T Consensus 108 ~-~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~en~~~i~~lA~~y~~~Vva~s~~-- 184 (319)
T PRK04452 108 S-PEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEEDNYKKIAAAAMAYGHAVIAWSPL-- 184 (319)
T ss_pred h-HHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHHHHHHHHHHHHHhCCeEEEEcHH--
Confidence 1 233444 55666889999965433 6666666655433 1 356777777776 555566789999999743
Q ss_pred CHHHHHHHHHHHHHcCC--CcEEEEeecCC
Q 022892 142 ASSVMVNSAEKVRLAGN--PNVMVCERGTM 169 (290)
Q Consensus 142 tl~e~~~Ave~i~~~Gn--~~i~L~~~gs~ 169 (290)
+++..++.++.+...|- .+ +++..++.
T Consensus 185 Dln~ak~L~~~l~~~Gi~~ed-IviDP~~~ 213 (319)
T PRK04452 185 DINLAKQLNILLTELGVPRER-IVMDPTTG 213 (319)
T ss_pred HHHHHHHHHHHHHHcCCCHHH-EEEeCCcc
Confidence 48888888888888886 44 55677664
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.26 E-value=12 Score=35.41 Aligned_cols=83 Identities=17% Similarity=0.340 Sum_probs=52.8
Q ss_pred CCCeEEEEccCC--ccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEE
Q 022892 14 AEPFFLLAGPNV--IESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIV 91 (290)
Q Consensus 14 ~~~~~iIAgpcs--ien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~ 91 (290)
+..++|||=-.+ .+..+..++.|+...+ +|||+|+-... ..+.++++++++..+|++
T Consensus 148 ~~d~~IiARTDa~~~~g~deAI~Ra~aY~e----AGAD~ifi~~~-----------------~~~~~i~~~~~~~~~Pl~ 206 (292)
T PRK11320 148 DPDFVIMARTDALAVEGLDAAIERAQAYVE----AGADMIFPEAM-----------------TELEMYRRFADAVKVPIL 206 (292)
T ss_pred CCCeEEEEecCcccccCHHHHHHHHHHHHH----cCCCEEEecCC-----------------CCHHHHHHHHHhcCCCEE
Confidence 456888885443 2345667777777666 69999986421 236677778888888886
Q ss_pred EeecCc-----ccHHHHhh-hcceecccCCcc
Q 022892 92 TDVHET-----VQCEEVGK-VADIIQIPAFLC 117 (290)
Q Consensus 92 s~~~d~-----~~~~~l~~-~~d~~kIgs~~~ 117 (290)
.-+... .+++.+.+ .+..+-.|....
T Consensus 207 ~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~ 238 (292)
T PRK11320 207 ANITEFGATPLFTTEELASAGVAMVLYPLSAF 238 (292)
T ss_pred EEeccCCCCCCCCHHHHHHcCCcEEEEChHHH
Confidence 544421 25666666 577776666543
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=84.13 E-value=54 Score=33.65 Aligned_cols=98 Identities=9% Similarity=0.103 Sum_probs=62.6
Q ss_pred HHHHHhcCCeEEEeC-----CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCC-EEEe
Q 022892 123 LVAAAKTGKIINIKK-----GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCP-VVAD 195 (290)
Q Consensus 123 L~~~a~~~~PVilst-----G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~p-V~~D 195 (290)
++.+-..+..|.+.. +...+++-+.+.++.+...|-..+.||..... -.|.. + ...+..+++ +..+ |++
T Consensus 128 v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~-~~P~~-v-~~li~~l~~~~~~~~i~v- 203 (526)
T TIGR00977 128 VAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLCDTNGG-TLPHE-I-SEITTKVKRSLKQPQLGI- 203 (526)
T ss_pred HHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEecCCCC-cCHHH-H-HHHHHHHHHhCCCCEEEE-
Confidence 344555677775432 22337888888888888889989999876652 12221 1 145666776 5554 777
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 196 ~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+.|-. +.+...-+.+|+.+||+ .+|.-+.
T Consensus 204 H~HND------------------~GlAvANslaAv~AGA~--~Vd~Tin 232 (526)
T TIGR00977 204 HAHND------------------SGTAVANSLLAVEAGAT--MVQGTIN 232 (526)
T ss_pred EECCC------------------CChHHHHHHHHHHhCCC--EEEEecc
Confidence 66642 22334557789999998 7887665
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=84.10 E-value=43 Score=32.53 Aligned_cols=147 Identities=19% Similarity=0.147 Sum_probs=93.3
Q ss_pred CCeEEEEcc-------CCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-c
Q 022892 15 EPFFLLAGP-------NVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-Y 86 (290)
Q Consensus 15 ~~~~iIAgp-------csien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~ 86 (290)
+.+-||||. |.|-..-...++|+...+ .||.++-- .|-+..|+| .+..|+++++. .
T Consensus 117 g~~~vIAEvKrASPSkG~I~~~~dp~~iA~~Ye~----~GA~aISV-------LTd~~~F~G-----s~e~L~~vr~~~v 180 (338)
T PLN02460 117 GQPGLIAEVKKASPSRGVLRENFDPVEIAQAYEK----GGAACLSV-------LTDEKYFQG-----SFENLEAIRNAGV 180 (338)
T ss_pred CCcceEeeeccCCCCCCccCCCCCHHHHHHHHHh----CCCcEEEE-------ecCcCcCCC-----CHHHHHHHHHcCC
Confidence 347899975 223111124566666555 69988743 222333543 46777888777 8
Q ss_pred CCcEEEe--ecCcccHHHHhh-hcceecccCCccCC--H-HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCc
Q 022892 87 DIPIVTD--VHETVQCEEVGK-VADIIQIPAFLCRQ--T-DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 87 Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~~n--~-~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~ 160 (290)
.+|++.- +.|+.++.+... ..|++-+=+.-+.. + .|++.+..+|+-+++... +.+|+..|++. .|..=
T Consensus 181 ~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH---~~~ElerAl~~---~ga~i 254 (338)
T PLN02460 181 KCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVH---DEREMDRVLGI---EGVEL 254 (338)
T ss_pred CCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHhc---CCCCE
Confidence 9999984 667778877766 57766555555543 2 466777789999999987 88999988652 14322
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHh
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMRE 187 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~ 187 (290)
|-+=.| +..+..+|+.....|..
T Consensus 255 IGINNR----dL~Tf~vDl~~t~~L~~ 277 (338)
T PLN02460 255 IGINNR----SLETFEVDISNTKKLLE 277 (338)
T ss_pred EEEeCC----CCCcceECHHHHHHHhh
Confidence 333223 35556788887776654
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.97 E-value=5.7 Score=37.61 Aligned_cols=72 Identities=17% Similarity=0.296 Sum_probs=46.0
Q ss_pred cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHH
Q 022892 188 ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEE 267 (290)
Q Consensus 188 ~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ 267 (290)
.++||.+|.+++- |...-+....+.....|+.|+=||-+.-|.| |-|-..-..-++.++++.
T Consensus 77 ~~lPv~vD~dtGf----------------G~~~nvartV~~~~~aG~agi~iEDq~~pk~--cgh~~gk~l~~~~e~v~r 138 (289)
T COG2513 77 VDLPVLVDIDTGF----------------GEALNVARTVRELEQAGAAGIHIEDQVGPKR--CGHLPGKELVSIDEMVDR 138 (289)
T ss_pred cCCceEEeccCCC----------------CcHHHHHHHHHHHHHcCcceeeeeecccchh--cCCCCCCCcCCHHHHHHH
Confidence 5799999999985 4333334445566789999999998876543 222222222345667777
Q ss_pred HHHHHHHhCC
Q 022892 268 LVAIAKVSKG 277 (290)
Q Consensus 268 ir~~~~~lg~ 277 (290)
|+.+..+..+
T Consensus 139 IkAa~~a~~~ 148 (289)
T COG2513 139 IKAAVEARRD 148 (289)
T ss_pred HHHHHHhccC
Confidence 7777666543
|
|
| >PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated | Back alignment and domain information |
|---|
Probab=83.97 E-value=48 Score=34.49 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=85.4
Q ss_pred hcCCCCeEEEEccCCcc--CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh---
Q 022892 11 LKAAEPFFLLAGPNVIE--SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA--- 85 (290)
Q Consensus 11 i~~~~~~~iIAgpcsie--n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~--- 85 (290)
||-++| ..|--.+.-+ |.+..++..++|.+ +|+++|+...-. .+.-+.|.+.+++
T Consensus 25 iGG~~P-I~VQSMt~t~T~D~~atv~Qi~~L~~----aGceiVRvtvp~---------------~~~A~al~~I~~~L~~ 84 (606)
T PRK00694 25 VGSEHS-IKIQSMTTTATTDVDGTVRQICALQE----WGCDIVRVTVQG---------------LKEAQACEHIKERLIQ 84 (606)
T ss_pred ECCCCc-eEEEecCCCCcccHHHHHHHHHHHHH----cCCCEEEEcCCC---------------HHHHHhHHHHHHHHhc
Confidence 344444 4555444432 45677888888877 599999875322 2344445555555
Q ss_pred --cCCcEEEee-cCcccHHHHhhhcceecccCCccCC--------------------------HHHHHHHHhcCCeEEEe
Q 022892 86 --YDIPIVTDV-HETVQCEEVGKVADIIQIPAFLCRQ--------------------------TDLLVAAAKTGKIINIK 136 (290)
Q Consensus 86 --~Gi~~~s~~-~d~~~~~~l~~~~d~~kIgs~~~~n--------------------------~~lL~~~a~~~~PVils 136 (290)
..+|+++++ ||+..+....+.++-+-|-.+++-+ .++++.+-..++||=+=
T Consensus 85 ~g~~iPLVADIHF~~~~A~~a~~~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIG 164 (606)
T PRK00694 85 QGISIPLVADIHFFPQAAMHVADFVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIG 164 (606)
T ss_pred cCCCCCEEeecCCChHHHHHHHHhcCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEe
Confidence 678999998 5555555555678888888777754 25666677789998776
Q ss_pred CCCCCCHH------------HH-HHH---HHHHHHcCCCcEEEEeecC
Q 022892 137 KGQFCASS------------VM-VNS---AEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 137 tG~~~tl~------------e~-~~A---ve~i~~~Gn~~i~L~~~gs 168 (290)
++.. |++ -| +.| ++++.+.|-.++++---.|
T Consensus 165 vN~G-SL~~~i~~~yG~tpegmVeSAle~~~i~e~~~f~diviS~KsS 211 (606)
T PRK00694 165 VNHG-SLSERVMQRYGDTIEGMVYSALEYIEVCEKLDYRDVVFSMKSS 211 (606)
T ss_pred cCCc-CchHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC
Confidence 6654 443 22 222 3356667777777755544
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.92 E-value=10 Score=35.88 Aligned_cols=113 Identities=10% Similarity=0.097 Sum_probs=0.0
Q ss_pred cCCcc-CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH---HHHHHHhcCCcEEEee----
Q 022892 23 PNVIE-SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI---LEKVKIAYDIPIVTDV---- 94 (290)
Q Consensus 23 pcsie-n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~---L~~~~~~~Gi~~~s~~---- 94 (290)
|-++| ||-.+++..++-+++ |+.-||+. --.+.+++-++. ..++|+..|+.+=.|+
T Consensus 79 PV~lHLDHg~~~e~i~~ai~~----GftSVM~D------------gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vg 142 (286)
T PRK08610 79 PVAIHLDHGSSFEKCKEAIDA----GFTSVMID------------ASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVG 142 (286)
T ss_pred CEEEECCCCCCHHHHHHHHHc----CCCEEEEe------------CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccC
Q ss_pred -------------cCcccHHHHhh--hcceecccCCcc---------CCHHHHHHHHhc-CCeEEEeCCCCCCHHHHHHH
Q 022892 95 -------------HETVQCEEVGK--VADIIQIPAFLC---------RQTDLLVAAAKT-GKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 95 -------------~d~~~~~~l~~--~~d~~kIgs~~~---------~n~~lL~~~a~~-~~PVilstG~~~tl~e~~~A 149 (290)
-||+++..+.+ .+|++.|+=+++ -|+++|+++.+. +.|++|-=|....-+++..|
T Consensus 143 g~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~a 222 (286)
T PRK08610 143 GQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKA 222 (286)
T ss_pred CccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHH
Q ss_pred HH
Q 022892 150 AE 151 (290)
Q Consensus 150 ve 151 (290)
++
T Consensus 223 i~ 224 (286)
T PRK08610 223 IP 224 (286)
T ss_pred HH
|
|
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.91 E-value=20 Score=34.96 Aligned_cols=64 Identities=11% Similarity=-0.133 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCC-c-cCCHHHHHHHHhcCCeE---EEeCCCCCCHHHHHHH
Q 022892 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAF-L-CRQTDLLVAAAKTGKII---NIKKGQFCASSVMVNS 149 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~-~-~~n~~lL~~~a~~~~PV---ilstG~~~tl~e~~~A 149 (290)
.+..+.+-|+++|+|++..++-.- - .|... + -+..+++.++++...-+ |+|+.-.++.++...+
T Consensus 180 ~l~~i~~ea~~~GlPlv~~~YpRG-~----------~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v 248 (348)
T PRK09250 180 EISEAFEEAHELGLATVLWSYLRN-S----------AFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAI 248 (348)
T ss_pred HHHHHHHHHHHhCCCEEEEecccC-c----------ccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHh
Confidence 455567788999999988543221 0 00000 1 12345666666544433 4777766566665543
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=83.82 E-value=19 Score=31.89 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCC------cc---CCHHHHHHHHh-cCCeEEEeCCCCCCHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAF------LC---RQTDLLVAAAK-TGKIINIKKGQFCASSVM 146 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~------~~---~n~~lL~~~a~-~~~PVilstG~~~tl~e~ 146 (290)
.+.+.+++.+++++..+.+.+.+..+.+ .+|++.+-+. .- ....+++++.+ .++||++.-|.. +.+++
T Consensus 93 ~~~~~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~-~~~~v 171 (236)
T cd04730 93 EVVERLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIA-DGRGI 171 (236)
T ss_pred HHHHHHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCC-CHHHH
Confidence 3455566789999998888777777666 5888877332 11 23456776653 589999999988 77777
Q ss_pred HHHHHHHHHcCCCcEEE
Q 022892 147 VNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 147 ~~Ave~i~~~Gn~~i~L 163 (290)
..+++ .|..-+++
T Consensus 172 ~~~l~----~GadgV~v 184 (236)
T cd04730 172 AAALA----LGADGVQM 184 (236)
T ss_pred HHHHH----cCCcEEEE
Confidence 76653 46544444
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=83.82 E-value=11 Score=35.65 Aligned_cols=93 Identities=8% Similarity=0.019 Sum_probs=56.9
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s 92 (290)
++++-||+|.++. +.+.+++.|+. |+++|+|+|..- .|+.|. +.-++-+...+++|+.. ++|++-
T Consensus 75 ~grvpvi~Gv~~~-~t~~ai~~a~~----A~~~Gad~vlv~--------~P~y~~-~~~~~l~~yf~~va~a~~~lPv~i 140 (309)
T cd00952 75 AGRVPVFVGATTL-NTRDTIARTRA----LLDLGADGTMLG--------RPMWLP-LDVDTAVQFYRDVAEAVPEMAIAI 140 (309)
T ss_pred CCCCCEEEEeccC-CHHHHHHHHHH----HHHhCCCEEEEC--------CCcCCC-CCHHHHHHHHHHHHHhCCCCcEEE
Confidence 5677899999863 55555555554 555799987653 122122 22134566788888888 688874
Q ss_pred e--------ecCcccHHHHhh--hcceecccCCccCCHH
Q 022892 93 D--------VHETVQCEEVGK--VADIIQIPAFLCRQTD 121 (290)
Q Consensus 93 ~--------~~d~~~~~~l~~--~~d~~kIgs~~~~n~~ 121 (290)
= .++++.+..|.+ .+-.+|-.+ ++.+..
T Consensus 141 Yn~P~~tg~~l~~~~l~~L~~~pnivgiKdss-d~~~~~ 178 (309)
T cd00952 141 YANPEAFKFDFPRAAWAELAQIPQVVAAKYLG-DIGALL 178 (309)
T ss_pred EcCchhcCCCCCHHHHHHHhcCCCEEEEEecC-ChHHHH
Confidence 1 344455555554 356677777 665543
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.77 E-value=11 Score=35.51 Aligned_cols=76 Identities=9% Similarity=0.082 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCcEEEee-----------------cCcccHHHHh-h-hcceecccCCcc---------CCHHHHHHHH
Q 022892 76 LKILEKVKIAYDIPIVTDV-----------------HETVQCEEVG-K-VADIIQIPAFLC---------RQTDLLVAAA 127 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~-----------------~d~~~~~~l~-~-~~d~~kIgs~~~---------~n~~lL~~~a 127 (290)
-++..++|+..|+.+=.|. -||+++..+. + .+|++.|+=+++ -|+++|+++.
T Consensus 120 Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~ 199 (285)
T PRK07709 120 TKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVR 199 (285)
T ss_pred HHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHH
Confidence 4457788888888775543 3555554443 3 688888776655 4667777765
Q ss_pred h-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 128 K-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 128 ~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
+ ++.|++|-=|....-+++..|++
T Consensus 200 ~~~~iPLVLHGgSG~~~e~~~~ai~ 224 (285)
T PRK07709 200 DFTGVPLVLHGGTGIPTADIEKAIS 224 (285)
T ss_pred HHHCCCEEEeCCCCCCHHHHHHHHH
Confidence 3 57888776666645566666543
|
|
| >COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.72 E-value=27 Score=34.32 Aligned_cols=130 Identities=15% Similarity=0.105 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHHHHH-cCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh
Q 022892 28 SEEHIMRMAKHIKSISTK-VGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV 106 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~-~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~ 106 (290)
+.+...+.|+++.+...+ .| .-.+...+--.+|+ |-.+-+.+..+...+.|+|++---||++.+....+.
T Consensus 108 ~e~el~~r~~~I~~f~~ervG-e~L~LDgvair~~S--------gdpekfa~ave~v~~~~~pv~l~s~dpevmkaaLev 178 (467)
T COG1456 108 DEEELVERANEIANFRKERVG-EKLKLDGVAIRNRS--------GDPEKFAEAVEKVAEAGLPVILCSFDPEVMKAALEV 178 (467)
T ss_pred CHHHHHHHHHHHHHHHHhhhc-ceeeeeeEEEEecC--------CCHHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Confidence 466788888888876543 23 11222211110222 113567777777889999999999999988776553
Q ss_pred cc---eecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 107 AD---IIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 107 ~d---~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
+. =+--++..=+.-++++.+...+.|+.|+.- .+++++++-+..+++.|-.+|+ ++-|+.
T Consensus 179 ~~dqkPllYaAte~n~~e~~klav~y~vplvl~a~--~dl~~lk~la~~~~~~Gi~div-LdPgT~ 241 (467)
T COG1456 179 VKDQKPLLYAATEDNWKEFAKLAVEYKVPLVLSAF--NDLDDLKNLAVTYAQAGIKDIV-LDPGTY 241 (467)
T ss_pred hhccCceeeecccccHHHHHHHHhhcCCcEEEecc--CCHHHHHHHHHHHHHcCCceEE-ecCCcc
Confidence 22 122344444555788888889999999974 2799999999999999987754 566663
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.69 E-value=51 Score=33.04 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHH-HHHHHhcCCeE----EEeCCCCCCHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDL-LVAAAKTGKII----NIKKGQFCASSVMVN 148 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~l-L~~~a~~~~PV----ilstG~~~tl~e~~~ 148 (290)
+-.+...+.+.+.|+.++- +||. + -|.+|... ++++.+.|.-+ -.-++.-.|++-|.+
T Consensus 98 DvVe~Fv~ka~~nGidvfR-iFDA-----l-----------ND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~ 160 (472)
T COG5016 98 DVVEKFVEKAAENGIDVFR-IFDA-----L-----------NDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVE 160 (472)
T ss_pred HHHHHHHHHHHhcCCcEEE-echh-----c-----------cchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHH
Confidence 3444555666677776652 3322 1 23466543 35555666643 334555669999999
Q ss_pred HHHHHHHcCCCcEEEEeecC-CCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHH
Q 022892 149 SAEKVRLAGNPNVMVCERGT-MFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIA 226 (290)
Q Consensus 149 Ave~i~~~Gn~~i~L~~~gs-~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a 226 (290)
-++.+..-|.+.|++=.-.. ..||. -..-+..+|+ +++||-+ ++|.. .|. ....-
T Consensus 161 ~akel~~~g~DSIciKDmaGlltP~~----ayelVk~iK~~~~~pv~l-HtH~T---------------sG~---a~m~y 217 (472)
T COG5016 161 LAKELLEMGVDSICIKDMAGLLTPYE----AYELVKAIKKELPVPVEL-HTHAT---------------SGM---AEMTY 217 (472)
T ss_pred HHHHHHHcCCCEEEeecccccCChHH----HHHHHHHHHHhcCCeeEE-ecccc---------------cch---HHHHH
Confidence 99999999988777765433 22332 2356777888 8999998 88885 342 23345
Q ss_pred HHHHHcCCCEEEEeeeCCCCC-------------CCC--CCCCCCChHHHHHHHHHHHHHHHHh
Q 022892 227 RTAIAVGVDGVFMEVHDDPLN-------------APV--DGPTQWPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 227 ~aAva~GA~G~~IEkH~t~dk-------------a~~--D~~~sl~p~~l~~lv~~ir~~~~~l 275 (290)
.+|+.+||| +|..-..|=. ++. +...-++.+.+++..+..+.+++-.
T Consensus 218 lkAvEAGvD--~iDTAisp~S~gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vrkkY 279 (472)
T COG5016 218 LKAVEAGVD--GIDTAISPLSGGTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVRKKY 279 (472)
T ss_pred HHHHHhCcc--hhhhhhccccCCCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 578999999 6665443322 111 4445677777877777777766544
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.59 E-value=12 Score=38.23 Aligned_cols=123 Identities=17% Similarity=0.105 Sum_probs=73.4
Q ss_pred ecCcccHHHHhh-hcceecccCCccCCH---HHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-ee
Q 022892 94 VHETVQCEEVGK-VADIIQIPAFLCRQT---DLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-ER 166 (290)
Q Consensus 94 ~~d~~~~~~l~~-~~d~~kIgs~~~~n~---~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~-~~ 166 (290)
+.+.+-++.|.+ .+|++.|-+.+=.+. ++++++-+. +.+|+ .-+.. |.++.+++++ .|-+-|.+. |.
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi-~g~v~-t~e~a~~a~~----aGaD~i~vg~g~ 320 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVI-GGNVV-TMYQAQNLIQ----AGVDGLRVGMGS 320 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEE-EecCC-CHHHHHHHHH----cCcCEEEECCCC
Confidence 455667777776 699999887654433 467777653 24444 44455 8999888765 576544441 23
Q ss_pred c----CCC----CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 167 G----TMF----GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 167 g----s~~----~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
| +.. ++|.. -.+..++.+.+ .++||+.|.-=.. ..-...|.++||+++
T Consensus 321 G~~~~t~~~~~~g~~~~-~~i~~~~~~~~~~~vpVIadGGI~~----------------------~~di~kAla~GA~~V 377 (505)
T PLN02274 321 GSICTTQEVCAVGRGQA-TAVYKVASIAAQHGVPVIADGGISN----------------------SGHIVKALTLGASTV 377 (505)
T ss_pred CccccCccccccCCCcc-cHHHHHHHHHHhcCCeEEEeCCCCC----------------------HHHHHHHHHcCCCEE
Confidence 3 211 12221 12223444444 6899998633211 223456799999999
Q ss_pred EEeeeCCC
Q 022892 238 FMEVHDDP 245 (290)
Q Consensus 238 ~IEkH~t~ 245 (290)
|+=+-|+-
T Consensus 378 ~vGs~~~~ 385 (505)
T PLN02274 378 MMGSFLAG 385 (505)
T ss_pred EEchhhcc
Confidence 99888764
|
|
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=83.56 E-value=34 Score=32.42 Aligned_cols=131 Identities=13% Similarity=0.057 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC-------CCCCchhHHHHHhcCCCEE
Q 022892 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND-------LIVDPRNLEWMREANCPVV 193 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~-------~~~dL~~i~~lk~~~~pV~ 193 (290)
++++.+.+.++.+.|.|.-. -+++. +..+...|...+.+=.-|....+.. .+.-+++|..+++.|++|.
T Consensus 91 eiv~~~~~~g~~v~l~TNG~-ll~~~---~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~ 166 (318)
T TIGR03470 91 EIVRGLVARKKFVYLCTNAL-LLEKK---LDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVT 166 (318)
T ss_pred HHHHHHHHcCCeEEEecCce-ehHHH---HHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEE
Confidence 45666666677777766644 34432 3345555655555533443211111 1122466777776778877
Q ss_pred EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 194 ~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
+..+-.. .-..+.+..+..-+..+|++++.+-..+..+++. |+..-++.++.+++.+.+.+.
T Consensus 167 v~~tv~~---------------~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~-~~~~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 167 TNTTLFN---------------DTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAP-DQDHFLGRRQTKKLFREVLSN 228 (318)
T ss_pred EEEEEeC---------------CCCHHHHHHHHHHHHHcCCCEEEEecCccccccc-ccccccCHHHHHHHHHHHHhh
Confidence 7554211 0123345566666788999987775544444443 445568888888888776553
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.52 E-value=35 Score=31.03 Aligned_cols=170 Identities=17% Similarity=0.220 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCCh-hHHHHHHH---HHHHhcCCcEEEeecCcccHHHHhhh
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGM-VEGLKILE---KVKIAYDIPIVTDVHETVQCEEVGKV 106 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~-~~~l~~L~---~~~~~~Gi~~~s~~~d~~~~~~l~~~ 106 (290)
.-++.|+.|++ .|+..|+-.-.+. -.|.|. .+-++++. +..-..|+ .|-++.+.+...
T Consensus 37 dP~eia~~lr~----rgar~vYiADLda--------I~g~g~n~d~i~~l~~~~~~ivD~Gv------~dL~s~~~~l~~ 98 (229)
T COG1411 37 DPLEIAEALRE----RGARFVYIADLDA--------ILGGGDNADTIRELSSLEKVIVDVGV------RDLESHAHRLIP 98 (229)
T ss_pred ChHHHHHHHhh----ccCceEEeeehHH--------HhcCCCcHHHHHHHHhhhhheeeccc------ccccCHHHhcCC
Confidence 35889999988 4888887765552 222221 12233322 22223333 377777777777
Q ss_pred cceecccCCccCCHHHHHHHHhcCCeEEEeCCC--CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHH
Q 022892 107 ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQ--FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEW 184 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~--~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~ 184 (290)
.+..-+|+.+...+.++++ ++.-.-+=+|.|- ...+++|+..|.-+...--+.++++.-++- +. ..-.|+..+..
T Consensus 99 ~~~~vv~TEt~e~~e~~e~-~r~vvslD~k~~~Ll~~~~ed~le~Vk~l~~~~~~~lIvLDi~aV-Gt-~~G~~~E~l~~ 175 (229)
T COG1411 99 AETAVVGTETLEDTEEDEE-GRIVVSLDVKGGELLGPWLEDFLETVKDLNYRRDPGLIVLDIGAV-GT-KSGPDYELLTK 175 (229)
T ss_pred Ccceeeccchhhhhhhhhc-cceEEEEecCCCeecCCCchhHHHHHHHHhccCCCCeEEEEcccc-cc-ccCCCHHHHHH
Confidence 8888899999988888776 2222223334332 124889998888776665677888877651 10 01135667776
Q ss_pred HHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 185 MRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 185 lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
... +..||.. ++.-+| .+-...+..+|++|+++-.-.
T Consensus 176 ~~~~s~~pVll-----------------GGGV~g-----~Edlel~~~~Gv~gvLvaTal 213 (229)
T COG1411 176 VLELSEHPVLL-----------------GGGVGG-----MEDLELLLGMGVSGVLVATAL 213 (229)
T ss_pred HHHhccCceee-----------------cCCcCc-----HHHHHHHhcCCCceeeehhhh
Confidence 666 5668865 111234 444445556899998886544
|
|
| >PTZ00378 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.41 E-value=24 Score=36.12 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHhcC--CcEEEeecCcccHHHHhhh---c-ceecccCCcc--C-CHHHHHHHHh--cCCeEEEeCCCCC
Q 022892 73 VEGLKILEKVKIAYD--IPIVTDVHETVQCEEVGKV---A-DIIQIPAFLC--R-QTDLLVAAAK--TGKIINIKKGQFC 141 (290)
Q Consensus 73 ~~~l~~L~~~~~~~G--i~~~s~~~d~~~~~~l~~~---~-d~~kIgs~~~--~-n~~lL~~~a~--~~~PVilstG~~~ 141 (290)
++..+++++.++++- |.++=++|++++-+-...+ + +-++|-..|+ + |...|+..-. ..--++||-++-|
T Consensus 329 ~elieyy~~li~kYP~iIvsIEDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIG 408 (518)
T PTZ00378 329 DQLSEYVREQLQAVPDIVVYVEDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIG 408 (518)
T ss_pred HHHHHHHHHHHHHCCCceEEEecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccce
Confidence 566788999999997 7778899999988766552 2 4455655555 7 7888877543 3347999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcEE---EEeec
Q 022892 142 ASSVMVNSAEKVRLAGNPNVM---VCERG 167 (290)
Q Consensus 142 tl~e~~~Ave~i~~~Gn~~i~---L~~~g 167 (290)
|+.|..++++..++.|- .++ +-||.
T Consensus 409 TlSEtieav~lA~~~g~-~~v~v~vShRS 436 (518)
T PTZ00378 409 TLSDVVEIVRAVGEDEG-RAVTVLVQTLA 436 (518)
T ss_pred eHHHHHHHHHHHHHcCC-cEEccccCCCc
Confidence 99999999999988774 344 66664
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=83.35 E-value=22 Score=31.40 Aligned_cols=152 Identities=17% Similarity=0.185 Sum_probs=79.3
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecC
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE 96 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d 96 (290)
+++++||..+=-..-...+|.+++.. |.. |...+.+. |+ -...++|+.|++.+|+|+......
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~----~~~-v~lis~D~--------~R----~ga~eQL~~~a~~l~vp~~~~~~~ 65 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK----GKK-VALISADT--------YR----IGAVEQLKTYAEILGVPFYVARTE 65 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT----T---EEEEEEST--------SS----THHHHHHHHHHHHHTEEEEESSTT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc----ccc-ceeecCCC--------CC----ccHHHHHHHHHHHhccccchhhcc
Confidence 56777888742233344555554432 432 22222221 33 368999999999999999874433
Q ss_pred cccHH-------HHhh-hcceecc--cCCccCCHHHHHHHHh-----cCCe--EEEeCCCCCCHHHHHHHHHHHHHcCCC
Q 022892 97 TVQCE-------EVGK-VADIIQI--PAFLCRQTDLLVAAAK-----TGKI--INIKKGQFCASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 97 ~~~~~-------~l~~-~~d~~kI--gs~~~~n~~lL~~~a~-----~~~P--VilstG~~~tl~e~~~Ave~i~~~Gn~ 159 (290)
.+..+ .+.+ ..|.+-| +++.-.+..+++++.+ ...- ++++-.+ ..+++..+.+....-+-.
T Consensus 66 ~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~--~~~~~~~~~~~~~~~~~~ 143 (196)
T PF00448_consen 66 SDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATM--GQEDLEQALAFYEAFGID 143 (196)
T ss_dssp SCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGG--GGHHHHHHHHHHHHSSTC
T ss_pred hhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEeccc--ChHHHHHHHHHhhcccCc
Confidence 32222 2222 3555554 4455555555544433 1222 3344433 466777665555444555
Q ss_pred cEEEEeecCCCCCCCCCCCchhHHH-HHhcCCCEEE
Q 022892 160 NVMVCERGTMFGYNDLIVDPRNLEW-MREANCPVVA 194 (290)
Q Consensus 160 ~i~L~~~gs~~~y~~~~~dL~~i~~-lk~~~~pV~~ 194 (290)
.+++...=. ...+.++-. +.++++||-|
T Consensus 144 ~lIlTKlDe-------t~~~G~~l~~~~~~~~Pi~~ 172 (196)
T PF00448_consen 144 GLILTKLDE-------TARLGALLSLAYESGLPISY 172 (196)
T ss_dssp EEEEESTTS-------SSTTHHHHHHHHHHTSEEEE
T ss_pred eEEEEeecC-------CCCcccceeHHHHhCCCeEE
Confidence 677655432 223333333 3448999987
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >TIGR01060 eno phosphopyruvate hydratase | Back alignment and domain information |
|---|
Probab=83.26 E-value=44 Score=33.17 Aligned_cols=93 Identities=19% Similarity=0.207 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh---c-ceecccCCc--cCCHHHHHHHHhc--CCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV---A-DIIQIPAFL--CRQTDLLVAAAKT--GKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~---~-d~~kIgs~~--~~n~~lL~~~a~~--~~PVilstG~~~tl~ 144 (290)
++.++.+++.++++++.++=+|+.+++.+-+.++ + +-+.|...+ ++|..-++.+-.. ---|.+|-+..+++.
T Consensus 265 ~eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGIt 344 (425)
T TIGR01060 265 EEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLT 344 (425)
T ss_pred HHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHH
Confidence 3556666667888999999999999887766542 2 022333333 2345444443221 224556666666666
Q ss_pred HHHHHHHHHHHcCCCcEEEEee
Q 022892 145 VMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
++.++++..+..|- .+++.||
T Consensus 345 ea~~ia~lA~~~Gi-~~vv~h~ 365 (425)
T TIGR01060 345 ETLDAVELAKKAGY-TAVISHR 365 (425)
T ss_pred HHHHHHHHHHHcCC-cEEEecC
Confidence 66666665554432 3344455
|
Alternate name: enolase |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=83.22 E-value=6.6 Score=36.29 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=70.4
Q ss_pred HHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccC-----CCCCcc------cCCCCCh-hH
Q 022892 7 LFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKA-----NRTSSK------SFRGPGM-VE 74 (290)
Q Consensus 7 ~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~-----~rts~~------~~~g~~~-~~ 74 (290)
+...+...-.+-|++......+.+...+.|+.+.+ +|+|+|....-... ++..+. .+.+..+ .-
T Consensus 153 iv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~----~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~ 228 (289)
T cd02810 153 LLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAER----AGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPL 228 (289)
T ss_pred HHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHH----cCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHH
Confidence 34444432123455554443366667777777766 69998765321110 000011 0111111 23
Q ss_pred HHHHHHHHHHhc--CCcEEE--eecCcccHHHHhh-hcceecccCCccCC-HHHHHHHH
Q 022892 75 GLKILEKVKIAY--DIPIVT--DVHETVQCEEVGK-VADIIQIPAFLCRQ-TDLLVAAA 127 (290)
Q Consensus 75 ~l~~L~~~~~~~--Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~~n-~~lL~~~a 127 (290)
.+++++++++.. +++++. -+.+++++..+.. .+|.++||+..+.| ..+.+.+.
T Consensus 229 ~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 229 ALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHHh
Confidence 577888888888 899986 6888777766554 79999999999998 87776653
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=83.18 E-value=47 Score=32.36 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCeE-EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcCC
Q 022892 121 DLLVAAAKTGKII-NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREANC 190 (290)
Q Consensus 121 ~lL~~~a~~~~PV-ilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~~ 190 (290)
+.++.+.+.+... ++--+.. ..++++.|++ .|-+.+.++-..|.. .... +.++ ...+...++.|+
T Consensus 56 e~i~~i~~~~~~~~i~~~~r~-~~~di~~a~~----~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~ 130 (378)
T PRK11858 56 EAIKAIAKLGLNASILALNRA-VKSDIDASID----CGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGL 130 (378)
T ss_pred HHHHHHHhcCCCeEEEEEccc-CHHHHHHHHh----CCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3566666554432 2222323 5777777654 566677777665521 1111 0111 123333444577
Q ss_pred CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 191 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 191 pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
.|.+++-.+. .-..+++..++.++..+||+.+. ++|-.-.++|.++.++++.+++
T Consensus 131 ~v~~~~ed~~---------------r~~~~~l~~~~~~~~~~Ga~~I~----------l~DT~G~~~P~~v~~lv~~l~~ 185 (378)
T PRK11858 131 YVSFSAEDAS---------------RTDLDFLIEFAKAAEEAGADRVR----------FCDTVGILDPFTMYELVKELVE 185 (378)
T ss_pred eEEEEeccCC---------------CCCHHHHHHHHHHHHhCCCCEEE----------EeccCCCCCHHHHHHHHHHHHH
Confidence 7777443321 01246677788888999998432 2688889999999999999886
Q ss_pred H
Q 022892 271 I 271 (290)
Q Consensus 271 ~ 271 (290)
.
T Consensus 186 ~ 186 (378)
T PRK11858 186 A 186 (378)
T ss_pred h
Confidence 4
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.16 E-value=7.6 Score=39.14 Aligned_cols=117 Identities=17% Similarity=0.084 Sum_probs=65.9
Q ss_pred CcccHHHHhh-hcceecccCCcc---CCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE-----E
Q 022892 96 ETVQCEEVGK-VADIIQIPAFLC---RQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV-----C 164 (290)
Q Consensus 96 d~~~~~~l~~-~~d~~kIgs~~~---~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L-----~ 164 (290)
+.+.++.+.+ .++++.+-+..- ....+++.+.+. +.||++.++. |.++.+++++ .|-+-|.+ -
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~--t~e~a~~l~~----aGad~i~vg~g~gs 302 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVA--TAEAARALIE----AGADAVKVGIGPGS 302 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccC--CHHHHHHHHH----cCCCEEEECCCCCc
Confidence 3455555555 577776643211 233455655543 6799996664 5888887764 46544433 1
Q ss_pred eecCC----CCCCCCCCCchhHHHHHh----cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCE
Q 022892 165 ERGTM----FGYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 236 (290)
Q Consensus 165 ~~gs~----~~y~~~~~dL~~i~~lk~----~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G 236 (290)
-|++. .+.| ++.++...++ .++||+.|.-=.. + .. +..|+++||+.
T Consensus 303 ~~~~r~~~~~g~p----~~~~~~~~~~~~~~~~~~viadGGi~~----------------~-----~d-i~kAla~GA~~ 356 (486)
T PRK05567 303 ICTTRIVAGVGVP----QITAIADAAEAAKKYGIPVIADGGIRY----------------S-----GD-IAKALAAGASA 356 (486)
T ss_pred cccceeecCCCcC----HHHHHHHHHHHhccCCCeEEEcCCCCC----------------H-----HH-HHHHHHhCCCE
Confidence 22322 1122 3445544433 4789987532111 1 23 34579999999
Q ss_pred EEEeeeCC
Q 022892 237 VFMEVHDD 244 (290)
Q Consensus 237 ~~IEkH~t 244 (290)
+|+=.-|+
T Consensus 357 v~~G~~~a 364 (486)
T PRK05567 357 VMLGSMLA 364 (486)
T ss_pred EEECcccc
Confidence 99987765
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=83.00 E-value=29 Score=33.24 Aligned_cols=77 Identities=9% Similarity=0.063 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCcEEEe-e---cCcccHHHHhh-hcceecccCCccCC----------------------H---HHH
Q 022892 74 EGLKILEKVKIAYDIPIVTD-V---HETVQCEEVGK-VADIIQIPAFLCRQ----------------------T---DLL 123 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~-~---~d~~~~~~l~~-~~d~~kIgs~~~~n----------------------~---~lL 123 (290)
..++.+++++++.++|++.- + +..+.+..+.+ .+|++-|+++--+| . ..|
T Consensus 166 ~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l 245 (333)
T TIGR02151 166 GWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASL 245 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHH
Confidence 45688888989999999872 3 56666777776 69999997753221 1 122
Q ss_pred HHHH--hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 124 VAAA--KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 124 ~~~a--~~~~PVilstG~~~tl~e~~~Ave 151 (290)
.++. ..+.||+.+-|.. +..++..++.
T Consensus 246 ~~~~~~~~~ipVIasGGI~-~~~di~kaLa 274 (333)
T TIGR02151 246 LEVRSDAPDAPIIASGGLR-TGLDVAKAIA 274 (333)
T ss_pred HHHHhcCCCCeEEEECCCC-CHHHHHHHHH
Confidence 2333 2467888888887 8888777654
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=82.93 E-value=35 Score=30.60 Aligned_cols=140 Identities=16% Similarity=0.084 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhc-CCcEEEe-ecCcccHHHHhh-hccee--cccC-CccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHH
Q 022892 74 EGLKILEKVKIAY-DIPIVTD-VHETVQCEEVGK-VADII--QIPA-FLCRQTDLLVAAAKTGKIINIKKGQFCASSVMV 147 (290)
Q Consensus 74 ~~l~~L~~~~~~~-Gi~~~s~-~~d~~~~~~l~~-~~d~~--kIgs-~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~ 147 (290)
+-++.++++++.. ++++++. |.| .++.+.+ .+|++ -++- .+-+-...++.+-+.++-+.++.... |+.+..
T Consensus 55 ~~~~~l~~~~~~~~~vhlmv~~p~d--~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~-t~~~~~ 131 (229)
T PLN02334 55 PVVKALRKHTDAPLDCHLMVTNPED--YVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPG-TPVEAV 131 (229)
T ss_pred HHHHHHHhcCCCcEEEEeccCCHHH--HHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCC-CCHHHH
Confidence 5677777777665 7777774 222 2344444 57877 4441 12223356677777788899998765 555544
Q ss_pred HHHHHHHHcC-CCcEEEEeecCCCCCCCCC---CCchhHHHHHh--cCCCEEEeCCCCCCCCCCCccCCCCccCCCCccc
Q 022892 148 NSAEKVRLAG-NPNVMVCERGTMFGYNDLI---VDPRNLEWMRE--ANCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 221 (290)
Q Consensus 148 ~Ave~i~~~G-n~~i~L~~~gs~~~y~~~~---~dL~~i~~lk~--~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~ 221 (290)
.+ +...| .+.+.++ +. .+++.-.. ..+..+..+++ .++||.+|..=+
T Consensus 132 ~~---~~~~~~~Dyi~~~-~v-~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~---------------------- 184 (229)
T PLN02334 132 EP---VVEKGLVDMVLVM-SV-EPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVG---------------------- 184 (229)
T ss_pred HH---HHhccCCCEEEEE-EE-ecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCC----------------------
Confidence 33 22332 5555442 11 11111111 22344555555 257887752211
Q ss_pred HHHHHHHHHHcCCCEEEEeeeCC
Q 022892 222 IPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 222 ~~~~a~aAva~GA~G~~IEkH~t 244 (290)
..-.....+.||+|+++=+-++
T Consensus 185 -~e~i~~l~~aGad~vvvgsai~ 206 (229)
T PLN02334 185 -PSTIDKAAEAGANVIVAGSAVF 206 (229)
T ss_pred -HHHHHHHHHcCCCEEEEChHHh
Confidence 2334456788999999987764
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=82.89 E-value=29 Score=31.70 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=42.0
Q ss_pred CCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchh-HHHHHhcCCCE
Q 022892 118 RQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRN-LEWMREANCPV 192 (290)
Q Consensus 118 ~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~-i~~lk~~~~pV 192 (290)
-|+++++++.+ ++.||+.+-|.. +++++..+.+ .|+-+.++ .|+.+.+. .+++.. +..|++.|+||
T Consensus 186 ~~~~~~~~i~~~~~ipvia~GGi~-s~~di~~~~~----~g~~dgv~--~g~a~~~~--~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 186 YDLELTKAVSEAVKIPVIASGGAG-KPEHFYEAFT----KGKADAAL--AASVFHYR--EITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCHHHHHHHHHhCCCCEEEeCCCC-CHHHHHHHHH----cCCcceee--EhHHHhCC--CCCHHHHHHHHHHCCCcc
Confidence 46788888764 588999999999 9999987643 35433333 44432122 245544 45566677775
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=82.75 E-value=8.4 Score=34.72 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=69.2
Q ss_pred EEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcc
Q 022892 19 LLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETV 98 (290)
Q Consensus 19 iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~ 98 (290)
++.|.+.+=|.+ .+++.++ +|++.+.-..+. +.+.++|++.|++++--++++.
T Consensus 68 ~~vGaGTV~~~~----~~~~a~~----aGA~FivsP~~~-------------------~~v~~~~~~~~i~~iPG~~T~~ 120 (213)
T PRK06552 68 VLIGAGTVLDAV----TARLAIL----AGAQFIVSPSFN-------------------RETAKICNLYQIPYLPGCMTVT 120 (213)
T ss_pred eEEeeeeCCCHH----HHHHHHH----cCCCEEECCCCC-------------------HHHHHHHHHcCCCEECCcCCHH
Confidence 556777764443 4444444 699888754332 3577889999999999999999
Q ss_pred cHHHHhh-hcceecccCCccCCHHHHHHHHh-cC-CeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 022892 99 QCEEVGK-VADIIQIPAFLCRQTDLLVAAAK-TG-KIINIKKGQFCASSVMVNSAEKVRLAGN 158 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~-~~-~PVilstG~~~tl~e~~~Ave~i~~~Gn 158 (290)
++....+ .+|++|+=..+..-...++.+.+ .+ .|++-.-|. +++ ++.+++. .|.
T Consensus 121 E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~atGGI--~~~---N~~~~l~-aGa 177 (213)
T PRK06552 121 EIVTALEAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVTGGV--NLD---NVKDWFA-AGA 177 (213)
T ss_pred HHHHHHHcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEECCC--CHH---HHHHHHH-CCC
Confidence 9998877 69999992223333666777653 33 676644443 444 3444443 454
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=82.68 E-value=33 Score=30.09 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc--EEEeecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP--IVTDVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~--~~s~~~d~~~~~~l~~ 105 (290)
+.+...+.++.+.+ .|+.+|-.. ++.. ...+.+....+.+.+. -..+++..++++...+
T Consensus 22 ~~~~~~~~~~~~~~----~Gv~~vqlr------------~k~~---~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~ 82 (187)
T PRK07455 22 DLELGLQMAEAVAA----GGMRLIEIT------------WNSD---QPAELISQLREKLPECIIGTGTILTLEDLEEAIA 82 (187)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEEe------------CCCC---CHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHH
Confidence 56777777777776 588776432 1111 1223333333333332 2458999999998877
Q ss_pred -hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHH
Q 022892 106 -VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEW 184 (290)
Q Consensus 106 -~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~ 184 (290)
.++++-+|..+ .+.++.....+.+.++ |.. |++|+..|.+ .|-+.+-+ |+.. ...-+..+..
T Consensus 83 ~gAdgv~~p~~~---~~~~~~~~~~~~~~i~--G~~-t~~e~~~A~~----~Gadyv~~------Fpt~-~~~G~~~l~~ 145 (187)
T PRK07455 83 AGAQFCFTPHVD---PELIEAAVAQDIPIIP--GAL-TPTEIVTAWQ----AGASCVKV------FPVQ-AVGGADYIKS 145 (187)
T ss_pred cCCCEEECCCCC---HHHHHHHHHcCCCEEc--CcC-CHHHHHHHHH----CCCCEEEE------CcCC-cccCHHHHHH
Confidence 68888877765 4555555566777664 544 9999988864 57776665 3221 1234567777
Q ss_pred HHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 185 MRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 185 lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
++. + ++|++. . +|.. +.=.....+.||+|+-+=+-+.
T Consensus 146 ~~~~~~~ipvva--i------------------GGI~---~~n~~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 146 LQGPLGHIPLIP--T------------------GGVT---LENAQAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred HHhhCCCCcEEE--e------------------CCCC---HHHHHHHHHCCCeEEEEehhcc
Confidence 777 6 688764 1 2310 2223345678998876654443
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=82.41 E-value=12 Score=37.72 Aligned_cols=117 Identities=19% Similarity=0.111 Sum_probs=66.4
Q ss_pred cHHHHhh-hcceecccCCccCCH---HHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEe-----ec
Q 022892 99 QCEEVGK-VADIIQIPAFLCRQT---DLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCE-----RG 167 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~~n~---~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~-----~g 167 (290)
-+..|.+ .+|.+.|-+.+-.+. ++++++-+. +.||+.-++ +|.++.+++++ .|-+-|-+.= |+
T Consensus 229 ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~--~t~~~~~~l~~----~G~d~i~vg~g~Gs~~t 302 (475)
T TIGR01303 229 KAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNV--VSAEGVRDLLE----AGANIIKVGVGPGAMCT 302 (475)
T ss_pred HHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEecc--CCHHHHHHHHH----hCCCEEEECCcCCcccc
Confidence 3334433 577777766664443 455555554 689999444 46888777654 4553322111 23
Q ss_pred CC----CCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 168 TM----FGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 168 s~----~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
++ +++|.....+.....++++++||+.|.- ++.| ..++ -|.++||+.+|+=.-|
T Consensus 303 tr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGg--i~~~-------------------~di~-kala~GA~~vm~g~~~ 360 (475)
T TIGR01303 303 TRMMTGVGRPQFSAVLECAAEARKLGGHVWADGG--VRHP-------------------RDVA-LALAAGASNVMVGSWF 360 (475)
T ss_pred CccccCCCCchHHHHHHHHHHHHHcCCcEEEeCC--CCCH-------------------HHHH-HHHHcCCCEEeechhh
Confidence 32 2344444445555555667899987522 2111 2344 4688999999887655
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=82.33 E-value=30 Score=30.49 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHH--HHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVA--AAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~--~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
.++.+|+++|..++-|+|=... ..+. .+...... ....+.|++++-+.. +++++.+|++.+..
T Consensus 14 ~fR~l~~~~~~~~~~t~~~~~~-~~~~-------------~~~~~~~~~~~~~~~~p~~~qi~g~-~~~~~~~aa~~~~~ 78 (231)
T cd02801 14 PFRLLCRRYGADLVYTEMISAK-ALLR-------------GNRKRLRLLTRNPEERPLIVQLGGS-DPETLAEAAKIVEE 78 (231)
T ss_pred HHHHHHHHHCCCEEEecCEEEh-hhhh-------------cCHHHHHhhccCccCCCEEEEEcCC-CHHHHHHHHHHHHh
Confidence 3677788889777766653321 1111 11111122 235688999999877 99999999999988
Q ss_pred cCCCcEEEEeecCCC------CCC-----CCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHH
Q 022892 156 AGNPNVMVCERGTMF------GYN-----DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIP 223 (290)
Q Consensus 156 ~Gn~~i~L~~~gs~~------~y~-----~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~ 223 (290)
.|-+ .+=+|+|.-. +|. +.......+..+++ .++||.++..-+. ...+...
T Consensus 79 aG~d-~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~----------------~~~~~~~ 141 (231)
T cd02801 79 LGAD-GIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW----------------DDEEETL 141 (231)
T ss_pred cCCC-EEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc----------------CCchHHH
Confidence 7864 4445665410 121 11222345566666 5678877544321 0011224
Q ss_pred HHHHHHHHcCCCEEEEeee
Q 022892 224 CIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 224 ~~a~aAva~GA~G~~IEkH 242 (290)
.++.....+|++. |..|
T Consensus 142 ~~~~~l~~~Gvd~--i~v~ 158 (231)
T cd02801 142 ELAKALEDAGASA--LTVH 158 (231)
T ss_pred HHHHHHHHhCCCE--EEEC
Confidence 4555566789984 4445
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=82.32 E-value=28 Score=39.82 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=77.1
Q ss_pred CCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 87 DIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 87 Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
|+|++|=+=..-+-+-|.+.+..+.=++| ++-.++|+.+-+-+..|.==| .. +++.+...++...+.+ ..++|..-
T Consensus 1071 glpvVtk~G~~G~~~tL~~~~~~l~~~~~-v~~~~~l~~A~~~~yav~afn-~~-n~e~~~avi~aAe~~~-sPvIl~~~ 1146 (1378)
T PLN02858 1071 GVPYIVFPGNVGDSTALAEVVKSWARPAR-SSTKELLLNAEKGGYAVGAFN-VY-NLEGIEAVVAAAEAEK-SPAILQVH 1146 (1378)
T ss_pred CCcEEEeCCcCCChHHHHHHHHHhcCcCC-ccHHHHHHHHHHCCcEEEEEE-eC-CHHHHHHHHHHHHHhC-CCEEEECC
Confidence 66777766666666666666777777777 445567776665555554333 22 5666666666555553 34555443
Q ss_pred cCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 167 GTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 167 gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
-....|....+ ...+..+.+ +.+||.+--||+. . ......|+.+|.+.+||.
T Consensus 1147 ~~~~~~~~~~~-~~~~~~~a~~~~vpV~lHLDHg~----------------~-----~~~i~~ai~~Gf~SVM~D 1199 (1378)
T PLN02858 1147 PGALKQGGIPL-VSCCIAAAEQASVPITVHFDHGT----------------S-----KHELLEALELGFDSVMVD 1199 (1378)
T ss_pred ccHHhhcCHHH-HHHHHHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHhCCCEEEEe
Confidence 22222322111 122333444 7899999888983 2 566778899999988886
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=82.21 E-value=20 Score=31.01 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=55.6
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE---eecCcccHHHHhh-hcceeccc-CC
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT---DVHETVQCEEVGK-VADIIQIP-AF 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s---~~~d~~~~~~l~~-~~d~~kIg-s~ 115 (290)
+.+.++|++.+..-... . .+.+..+.+++++.|++++. ++.++.++..+.+ .+|++++. ++
T Consensus 71 ~~~~~aGad~i~~h~~~-------------~-~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~ 136 (202)
T cd04726 71 EMAFKAGADIVTVLGAA-------------P-LSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGI 136 (202)
T ss_pred HHHHhcCCCEEEEEeeC-------------C-HHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcc
Confidence 44445688876653211 1 23467788889999999985 5556666655455 69998883 33
Q ss_pred cc------CCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHH
Q 022892 116 LC------RQTDLLVAAAK-TGKIINIKKGQFCASSVMVN 148 (290)
Q Consensus 116 ~~------~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~ 148 (290)
+. ...+.++++.+ .+.||...=|.. .+.+..
T Consensus 137 ~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~--~~~i~~ 174 (202)
T cd04726 137 DAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT--PDTLPE 174 (202)
T ss_pred cccccCCCCCHHHHHHHHhhcCCCEEEECCcC--HHHHHH
Confidence 22 22455555544 456777766653 555443
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=82.21 E-value=41 Score=30.92 Aligned_cols=83 Identities=11% Similarity=-0.014 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCcEEEee--cCcccHHHHhh-hcceecccCCccCCHH----------------HHHHHHhcCCeEE
Q 022892 74 EGLKILEKVKIAYDIPIVTDV--HETVQCEEVGK-VADIIQIPAFLCRQTD----------------LLVAAAKTGKIIN 134 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~--~d~~~~~~l~~-~~d~~kIgs~~~~n~~----------------lL~~~a~~~~PVi 134 (290)
+.+..+.+..++.|+.+..++ .+++.++.+.+ .++.+.++-. . +.. .++.+.+.|.+|.
T Consensus 98 ~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E-~-~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~ 175 (296)
T TIGR00433 98 EYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLD-T-SQEFYSNIISTHTYDDRVDTLENAKKAGLKVC 175 (296)
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEccc-C-CHHHHhhccCCCCHHHHHHHHHHHHHcCCEEE
Confidence 456667777788899886664 77888888877 5888777644 2 222 2344455677753
Q ss_pred Ee--CCCCCCHHHHHHHHHHHHHcCC
Q 022892 135 IK--KGQFCASSVMVNSAEKVRLAGN 158 (290)
Q Consensus 135 ls--tG~~~tl~e~~~Ave~i~~~Gn 158 (290)
.- .|..-+.+++.+.++.+...|-
T Consensus 176 ~~~i~Gl~et~~d~~~~~~~l~~l~~ 201 (296)
T TIGR00433 176 SGGIFGLGETVEDRIGLALALANLPP 201 (296)
T ss_pred EeEEEeCCCCHHHHHHHHHHHHhCCC
Confidence 21 3555688999999988877653
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.09 E-value=5.5 Score=38.11 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=80.1
Q ss_pred HHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC-----C---cc--cC---CCCCh-
Q 022892 7 LFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT-----S---SK--SF---RGPGM- 72 (290)
Q Consensus 7 ~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt-----s---~~--~~---~g~~~- 72 (290)
|.+.+....+.-|++-+.- |.+...+.|+.+.+ +|+|.|....-.. +|. + .. .+ -|..+
T Consensus 152 l~~~vk~~~~~Pv~vKl~P--~~~di~~iA~~~~~----~g~Dgl~~~NT~~-~~~~id~~~~~~~~~~~~GGLSG~~ik 224 (310)
T COG0167 152 LLEAVKAATKVPVFVKLAP--NITDIDEIAKAAEE----AGADGLIAINTTK-SGMKIDLETKKPVLANETGGLSGPPLK 224 (310)
T ss_pred HHHHHHhcccCceEEEeCC--CHHHHHHHHHHHHH----cCCcEEEEEeecc-ccccccccccccccCcCCCCcCcccch
Confidence 4445544333444454443 66788888888887 5999865433221 111 0 11 11 11112
Q ss_pred hHHHHHHHHHHHhcC--CcEEEe--ecCcc-cHHHHhhhcceecccCCccCC-HHHHHHHHhcCCeEEEeCCCCCCHHHH
Q 022892 73 VEGLKILEKVKIAYD--IPIVTD--VHETV-QCEEVGKVADIIQIPAFLCRQ-TDLLVAAAKTGKIINIKKGQFCASSVM 146 (290)
Q Consensus 73 ~~~l~~L~~~~~~~G--i~~~s~--~~d~~-~~~~l~~~~d~~kIgs~~~~n-~~lL~~~a~~~~PVilstG~~~tl~e~ 146 (290)
...+++++++.++.+ +|++.. +++.+ .++++...++++||++..+.. ..+.+.+.+-=.-..-+.|-. +++|+
T Consensus 225 p~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g~~-si~d~ 303 (310)
T COG0167 225 PIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKGFE-SIQDI 303 (310)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcCCC-CHHHH
Confidence 467999999999988 999874 66666 455566689999999999988 555554433111233344444 66666
Q ss_pred HH
Q 022892 147 VN 148 (290)
Q Consensus 147 ~~ 148 (290)
..
T Consensus 304 iG 305 (310)
T COG0167 304 IG 305 (310)
T ss_pred hc
Confidence 54
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=81.85 E-value=67 Score=33.12 Aligned_cols=88 Identities=15% Similarity=0.073 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-----eecCc--------c
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-----DVHET--------V 98 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-----~~~d~--------~ 98 (290)
-.++|++..+ .|+|-+-+--.+. .|+++.. -+.-++.+++.+++..+|+.. +.-|+ +
T Consensus 269 Pve~a~~y~~----~Gadel~~~Di~~-~~~~~~~-----~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e 338 (538)
T PLN02617 269 PVELAGQYYK----DGADEVAFLNITG-FRDFPLG-----DLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLE 338 (538)
T ss_pred HHHHHHHHHH----cCCCEEEEEECCC-CcCCccc-----chhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHH
Confidence 4677777776 5999776655542 2222210 023488899999999999876 44442 4
Q ss_pred cHHHHhh-hcceecccCCccCC------------HHHHHHHHhc
Q 022892 99 QCEEVGK-VADIIQIPAFLCRQ------------TDLLVAAAKT 129 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~~n------------~~lL~~~a~~ 129 (290)
+++.+-+ .+|-+-|+|.-+.| .+|++++++.
T Consensus 339 ~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~ 382 (538)
T PLN02617 339 VASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRV 382 (538)
T ss_pred HHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHH
Confidence 4555544 69999999977775 5899998754
|
|
| >TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase | Back alignment and domain information |
|---|
Probab=81.74 E-value=94 Score=35.17 Aligned_cols=203 Identities=15% Similarity=0.171 Sum_probs=111.0
Q ss_pred CCCCeEEEEccCCc------------cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHH
Q 022892 13 AAEPFFLLAGPNVI------------ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILE 80 (290)
Q Consensus 13 ~~~~~~iIAgpcsi------------en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~ 80 (290)
.+.++.+|.|=+-+ +|.+.+++.|+++++ .||+++=-..- ..+..-++.++++.
T Consensus 339 ~~~~~~~IGEr~N~~G~k~~~~~i~~~d~~~a~~~A~~qve----~GA~iIDVn~~----------~~~vd~~eem~rvv 404 (1178)
T TIGR02082 339 QDSNFVNIGERTNVAGSKKFRRLIIAEDYDEALDIAKQQVE----NGAQILDINVD----------YGMLDGVAAMKRFL 404 (1178)
T ss_pred CCCceEEEeeccchhhhHHHHHHHHcCCHHHHHHHHHHHHH----CCCCEEEECCC----------CCCCCHHHHHHHHH
Confidence 44567777765533 234556666666665 69998754321 11111145566665
Q ss_pred HHHHh---c-CCcEEEeecCcccHHHHhh---hccee-cccCCcc--CCHHHHHHHHhcCCeEEEeC----CCCCCHH--
Q 022892 81 KVKIA---Y-DIPIVTDVHETVQCEEVGK---VADII-QIPAFLC--RQTDLLVAAAKTGKIINIKK----GQFCASS-- 144 (290)
Q Consensus 81 ~~~~~---~-Gi~~~s~~~d~~~~~~l~~---~~d~~-kIgs~~~--~n~~lL~~~a~~~~PVilst----G~~~tl~-- 144 (290)
....+ . ++|+.-+-++++.++...+ ..+++ -|.+.+. .-..++..+++.|.||++-+ |+..|.+
T Consensus 405 ~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~p~t~e~r 484 (1178)
T TIGR02082 405 NLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQARTADRK 484 (1178)
T ss_pred HHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHH
Confidence 55543 2 8999999999888887655 23332 4444321 21246677889999988765 6665554
Q ss_pred --HHHHHHHHHHH-cCC-CcEEEEeecCC---CCCCC----CCCCchhHHHHHh-c-CCCEEEe-CCCCCCCCCCCccCC
Q 022892 145 --VMVNSAEKVRL-AGN-PNVMVCERGTM---FGYND----LIVDPRNLEWMRE-A-NCPVVAD-VTHSLQQPAGKKLDG 210 (290)
Q Consensus 145 --e~~~Ave~i~~-~Gn-~~i~L~~~gs~---~~y~~----~~~dL~~i~~lk~-~-~~pV~~D-~sHs~~~~~~~~~~~ 210 (290)
.....++.+.+ .|- ++=+++.++.- ++-.. ..-.|.++..+|+ + ++|+.+- |.=|.+.||..
T Consensus 485 ~~i~~~~~~~~~~~~Gi~~edIi~DP~i~~v~~g~~e~n~~~~~~le~i~~ik~~~pg~~~~~GlSN~SFglp~~~---- 560 (1178)
T TIGR02082 485 IEICKRAYNILTEKVGFPPEDIIFDPNILTIATGIEEHRRYAINFIEAIRWIKEELPDAKISGGVSNVSFSFRGNP---- 560 (1178)
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEeCCccccccCchHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCCCCCc----
Confidence 44455556665 673 35677888864 33110 0123455555665 4 7775441 33333233200
Q ss_pred CCccCCCCcccHHHH-HHHHHHcCCCEEEE
Q 022892 211 GGVASGGLRELIPCI-ARTAIAVGVDGVFM 239 (290)
Q Consensus 211 ~~~~~~g~~~~~~~~-a~aAva~GA~G~~I 239 (290)
-.|+.+..+ -..|+..|-+.-++
T Consensus 561 ------~~R~~ln~~FL~~a~~~Gld~aIv 584 (1178)
T TIGR02082 561 ------AAREAMHSVFLYHAIRAGMDMGIV 584 (1178)
T ss_pred ------hHHHHHHHHHHHHHHHcCCchhhc
Confidence 124444433 22467778664443
|
S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase. |
| >TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative | Back alignment and domain information |
|---|
Probab=81.64 E-value=6.9 Score=35.86 Aligned_cols=65 Identities=11% Similarity=0.252 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCC--cccCCCCChhHHHHHHHHHHHhcCCcEEEeecC
Q 022892 29 EEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTS--SKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE 96 (290)
Q Consensus 29 ~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts--~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d 96 (290)
.+..++..++.+++|+++|+..|.+..+.. +... ...+. .+.+.|+++.++++++|+.+.-|.++
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~-~~~~~~~~~~~--~~~~~l~~l~~~A~~~Gv~l~lE~~~ 155 (279)
T TIGR00542 89 RQQGLEIMEKAIQLARDLGIRTIQLAGYDV-YYEEHDEETRR--RFREGLKEAVELAARAQVTLAVEIMD 155 (279)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEecCccc-ccCcCCHHHHH--HHHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 445788899999999999999886643321 1000 00011 01367888899999999999999764
|
This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=81.59 E-value=26 Score=30.51 Aligned_cols=101 Identities=15% Similarity=0.061 Sum_probs=58.1
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCc----ccHHHHhh-hcceecccCCc-
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHET----VQCEEVGK-VADIIQIPAFL- 116 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~----~~~~~l~~-~~d~~kIgs~~- 116 (290)
+.++|+++|....+.. ...+..+.++++++|++++....++ +.+..+.+ .+|++++...-
T Consensus 72 ~~~~Gad~i~vh~~~~--------------~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~ 137 (206)
T TIGR03128 72 AFAAGADIVTVLGVAD--------------DATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLD 137 (206)
T ss_pred HHHcCCCEEEEeccCC--------------HHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcC
Confidence 4446888887553321 2346778888999999999877665 34455555 69999886421
Q ss_pred --c---CCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 022892 117 --C---RQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVM 162 (290)
Q Consensus 117 --~---~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~ 162 (290)
. ...+.++++.+ ...|.+.=.|-- +.+.+... ...|..-++
T Consensus 138 ~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~----~~~Ga~~v~ 184 (206)
T TIGR03128 138 EQAKGQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDV----IKLGPDIVI 184 (206)
T ss_pred cccCCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHH----HHcCCCEEE
Confidence 1 23444555443 233444323433 66665543 345654333
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.52 E-value=32 Score=31.80 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHH-HHHHhcCCcEEEeecCcccHHHHhhhcceecc
Q 022892 34 RMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILE-KVKIAYDIPIVTDVHETVQCEEVGKVADIIQI 112 (290)
Q Consensus 34 e~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~-~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kI 112 (290)
+.+.++.+.+.++|-|+|+-..-+ +.. ++.+..+- +.++..++|++-+|-++..+-. ++|.+-+
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~-----------gvt-~~~~~~~v~~ik~~~~lPvilfP~~~~~is~---~aDavff 92 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSD-----------GVT-EENVDNVVEAIKERTDLPVILFPGSPSGISP---YADAVFF 92 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcc-----------ccc-HHHHHHHHHHHHhhcCCCEEEecCChhccCc---cCCeEEE
Confidence 444445555556799999875322 222 34455544 4445999999999999877654 5666655
Q ss_pred cCCcc-CCHH--------HHHHHHhcCC---e---EEEeCCCC-----------CCHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 113 PAFLC-RQTD--------LLVAAAKTGK---I---INIKKGQF-----------CASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 113 gs~~~-~n~~--------lL~~~a~~~~---P---VilstG~~-----------~tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
+|=.- .|.. -...+++.+. | |++.-|.. -+-+++..+...-.+-=+-.++-+|-
T Consensus 93 ~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEa 172 (240)
T COG1646 93 PSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEA 172 (240)
T ss_pred EEEecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEe
Confidence 54322 1211 1122233222 1 23332221 13455555543222222357888999
Q ss_pred cCCCCCCCCCCCchhHHHHHhcCCCEEE
Q 022892 167 GTMFGYNDLIVDPRNLEWMREANCPVVA 194 (290)
Q Consensus 167 gs~~~y~~~~~dL~~i~~lk~~~~pV~~ 194 (290)
|+.+++|. ....+...++ ..++++
T Consensus 173 gsga~~Pv---~~e~v~~v~~-~~~Liv 196 (240)
T COG1646 173 GSGAGDPV---PVEMVSRVLS-DTPLIV 196 (240)
T ss_pred cCCCCCCc---CHHHHHHhhc-cceEEE
Confidence 88766553 3455544443 226655
|
|
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=81.45 E-value=6.8 Score=36.97 Aligned_cols=83 Identities=19% Similarity=0.196 Sum_probs=51.2
Q ss_pred eecccCCccCCHHHHH----HHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHH
Q 022892 109 IIQIPAFLCRQTDLLV----AAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEW 184 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~----~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~ 184 (290)
=|.||++++.|.+.++ ++-..+.||||..... +..-+ ..+.+ ...+..
T Consensus 16 ~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~-~~~~~--~~~~~-------------------------~~~~~~ 67 (287)
T PF01116_consen 16 GYAVPAFNVYNLETARAVIEAAEELNSPVILQISPS-EVKYM--GLEYL-------------------------AAMVKA 67 (287)
T ss_dssp T-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHH-HHHHH--HHHHH-------------------------HHHHHH
T ss_pred CCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchh-hhhhh--hHHHH-------------------------HHHHHH
Confidence 3678888888887554 4456788999987755 32222 00100 123344
Q ss_pred HHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 185 MRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 185 lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
+.+ +++||.+--||+. . ......|+..|.+.+|+-
T Consensus 68 ~a~~~~vPValHLDH~~----------------~-----~e~i~~ai~~GftSVM~D 103 (287)
T PF01116_consen 68 AAEEASVPVALHLDHGK----------------D-----FEDIKRAIDAGFTSVMID 103 (287)
T ss_dssp HHHHSTSEEEEEEEEE-----------------S-----HHHHHHHHHHTSSEEEEE
T ss_pred HHHHcCCCEEeecccCC----------------C-----HHHHHHHHHhCccccccc
Confidence 444 7899988778873 2 567778888999988875
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=81.36 E-value=30 Score=33.94 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 022892 121 DLLVAAAKTGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~~~tl~e~~~A 149 (290)
.+-+++++.|.|.++||..+.++||+..+
T Consensus 90 a~ARAA~~agi~~~lSt~ss~slEeIa~a 118 (366)
T PLN02979 90 ATARAASAAGTIMTLSSWATSSVEEVAST 118 (366)
T ss_pred HHHHHHHHcCCCeeeccCcCCCHHHHHhc
Confidence 56788999999999999999999999876
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=81.30 E-value=22 Score=33.42 Aligned_cols=100 Identities=15% Similarity=0.057 Sum_probs=62.2
Q ss_pred HHHHHHHh-c--CCeEEEeCCCC------CCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCC-------CCCCCchhHH
Q 022892 121 DLLVAAAK-T--GKIINIKKGQF------CASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYN-------DLIVDPRNLE 183 (290)
Q Consensus 121 ~lL~~~a~-~--~~PVilstG~~------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~-------~~~~dL~~i~ 183 (290)
+.++++.+ . +.||.++-... .+.+|+...++.+...|-.-|++ +.++.. ++. ....++..+.
T Consensus 196 eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~v-s~g~~~~~~~~~~~~~~~~~~~~~~~~ 274 (327)
T cd02803 196 EIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHV-SGGSYESPPPIIPPPYVPEGYFLELAE 274 (327)
T ss_pred HHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEe-CCCCCcccccccCCCCCCcchhHHHHH
Confidence 34444433 2 67999977643 36899999999898888654444 333321 111 1234566777
Q ss_pred HHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc-CCCEEEEeeeC
Q 022892 184 WMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV-GVDGVFMEVHD 243 (290)
Q Consensus 184 ~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~-GA~G~~IEkH~ 243 (290)
.+++ .++||+....-. . +..+..+++. |||++.+=+-+
T Consensus 275 ~ir~~~~iPVi~~Ggi~-----------------t-----~~~a~~~l~~g~aD~V~igR~~ 314 (327)
T cd02803 275 KIKKAVKIPVIAVGGIR-----------------D-----PEVAEEILAEGKADLVALGRAL 314 (327)
T ss_pred HHHHHCCCCEEEeCCCC-----------------C-----HHHHHHHHHCCCCCeeeecHHH
Confidence 7887 789998743322 1 4456667777 79988776655
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.24 E-value=7.7 Score=35.89 Aligned_cols=96 Identities=27% Similarity=0.309 Sum_probs=57.2
Q ss_pred CCHHHHHHH---HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEE
Q 022892 118 RQTDLLVAA---AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVV 193 (290)
Q Consensus 118 ~n~~lL~~~---a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~ 193 (290)
.++.+|+++ .+-|--|+-=+.-. + -.++.+...|. .+++-=++--+...--.|..++..+.+ +++||+
T Consensus 115 D~~etl~Aae~Lv~eGF~VlPY~~dD--~----v~arrLee~Gc--aavMPl~aPIGSg~G~~n~~~l~iiie~a~VPvi 186 (262)
T COG2022 115 DPIETLKAAEQLVKEGFVVLPYTTDD--P----VLARRLEEAGC--AAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVI 186 (262)
T ss_pred ChHHHHHHHHHHHhCCCEEeeccCCC--H----HHHHHHHhcCc--eEeccccccccCCcCcCCHHHHHHHHHhCCCCEE
Confidence 455566543 34455555444433 1 23345666665 344433331122222356677888888 899999
Q ss_pred EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 194 ~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+|.--+. +.-+..|..+|+||+++.+-.
T Consensus 187 VDAGiG~----------------------pSdAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 187 VDAGIGT----------------------PSDAAQAMELGADAVLLNTAI 214 (262)
T ss_pred EeCCCCC----------------------hhHHHHHHhcccceeehhhHh
Confidence 9865432 555667899999999988765
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.10 E-value=5.9 Score=39.30 Aligned_cols=91 Identities=18% Similarity=0.127 Sum_probs=57.6
Q ss_pred CCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCE
Q 022892 158 NPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 236 (290)
Q Consensus 158 n~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G 236 (290)
|..++.+|.-+++- -...|+..+..+.+ .|..|++|.+-+. + .-..+..+|||
T Consensus 162 ~t~~V~~ESPsNPl--l~v~DI~~l~~la~~~g~~vvVDnTf~~----------------------p-~~~~pL~lGAD- 215 (409)
T KOG0053|consen 162 NTKAVFLESPSNPL--LKVPDIEKLARLAHKYGFLVVVDNTFGS----------------------P-YNQDPLPLGAD- 215 (409)
T ss_pred CceEEEEECCCCCc--cccccHHHHHHHHhhCCCEEEEeCCcCc----------------------c-cccChhhcCCC-
Confidence 56788888877522 24678888888877 8999999988762 2 12245788999
Q ss_pred EEEee---eCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 237 VFMEV---HDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 237 ~~IEk---H~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
+|.++ .+.-+...--+...+. .+++.+.++..+..+|.
T Consensus 216 IV~hSaTKyi~Ghsdvi~G~iv~n---~~~~~~~l~~~~~~lg~ 256 (409)
T KOG0053|consen 216 IVVHSATKYIGGHSDVIGGSVVLN---SEELASRLKFLQEDLGW 256 (409)
T ss_pred EEEEeeeeeecCCcceeeeEEecC---cHHHHHHHHHHHHHhcC
Confidence 77774 3322222222223333 55666666666676664
|
|
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=81.06 E-value=50 Score=32.24 Aligned_cols=131 Identities=10% Similarity=0.051 Sum_probs=78.7
Q ss_pred cCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCC-CCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHH
Q 022892 23 PNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANR-TSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCE 101 (290)
Q Consensus 23 pcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~r-ts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~ 101 (290)
+++ +++...++...++++.|+++|..+|... |..-+. +....|. .. .+-+....+++.++|-.++=+.+-.+.-
T Consensus 169 ~Gs-~~E~~ml~~l~~i~~ea~~~GlPlv~~~-YpRG~~i~~~~d~~-~~-~d~Ia~AaRiaaELGADIVKv~yp~~~~- 243 (348)
T PRK09250 169 FGS-EESRRQIEEISEAFEEAHELGLATVLWS-YLRNSAFKKDGDYH-TA-ADLTGQANHLAATIGADIIKQKLPTNNG- 243 (348)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHhCCCEEEEe-cccCcccCCccccc-cc-HHHHHHHHHHHHHHcCCEEEecCCCChh-
Confidence 444 3556678888999999999998877643 321011 1111111 01 2456778889999999999988864322
Q ss_pred HHhhh-cceecc----cCCccCCHHHHHHH-Hhc---CCeEEEeCCCCCCHHHHHHHHHHH---HHcCC
Q 022892 102 EVGKV-ADIIQI----PAFLCRQTDLLVAA-AKT---GKIINIKKGQFCASSVMVNSAEKV---RLAGN 158 (290)
Q Consensus 102 ~l~~~-~d~~kI----gs~~~~n~~lL~~~-a~~---~~PVilstG~~~tl~e~~~Ave~i---~~~Gn 158 (290)
.+.+. ....+. .-..-++.++++++ ... +.||+++=|...+.+|+++.++-. ...|.
T Consensus 244 ~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa 312 (348)
T PRK09250 244 GYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGG 312 (348)
T ss_pred hHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCC
Confidence 22221 111111 11112455666654 343 789999999997888888888766 66665
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=81.00 E-value=13 Score=33.84 Aligned_cols=96 Identities=13% Similarity=0.057 Sum_probs=66.8
Q ss_pred EEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCc
Q 022892 18 FLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHET 97 (290)
Q Consensus 18 ~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~ 97 (290)
-++.|.+.+=|.+ .+++.++ +|++.+.-..++ +.+.++|++.|++++-=++.|
T Consensus 70 ~~~vGaGTVl~~e----~a~~a~~----aGA~FiVsP~~~-------------------~~v~~~~~~~~i~~iPG~~Tp 122 (222)
T PRK07114 70 GMILGVGSIVDAA----TAALYIQ----LGANFIVTPLFN-------------------PDIAKVCNRRKVPYSPGCGSL 122 (222)
T ss_pred CeEEeeEeCcCHH----HHHHHHH----cCCCEEECCCCC-------------------HHHHHHHHHcCCCEeCCCCCH
Confidence 3566777764443 3444444 699887754433 357789999999999999999
Q ss_pred ccHHHHhh-hcceecccCCccCCHHHHHHHHh-c-CCeEEEeCCCC
Q 022892 98 VQCEEVGK-VADIIQIPAFLCRQTDLLVAAAK-T-GKIINIKKGQF 140 (290)
Q Consensus 98 ~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~-~-~~PVilstG~~ 140 (290)
.++....+ .++++|+=-..+--..+++.+.. . +.|++=.=|..
T Consensus 123 sEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~p~i~~~ptGGV~ 168 (222)
T PRK07114 123 SEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPMPWTKIMPTGGVE 168 (222)
T ss_pred HHHHHHHHCCCCEEEECcccccCHHHHHHHhccCCCCeEEeCCCCC
Confidence 99998887 69999996555656888888765 2 33444444443
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=80.96 E-value=44 Score=30.42 Aligned_cols=173 Identities=10% Similarity=0.060 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
-+++|+.+.+ .|++-+...-++.+ ++. ...+..+++.+++.-.|+.. =+-+.++++.+.+ .++
T Consensus 32 P~~~a~~~~~----~ga~~lhivDLd~a--------~~~--~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~ 97 (232)
T PRK13586 32 PIEIASKLYN----EGYTRIHVVDLDAA--------EGV--GNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVN 97 (232)
T ss_pred HHHHHHHHHH----CCCCEEEEEECCCc--------CCC--cchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCC
Confidence 5788888887 58887766555421 111 13356777777642225444 6788888887766 699
Q ss_pred eecccCCccCCHHHHHHHHhc--CCeEEEeCCC------------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT--GKIINIKKGQ------------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~--~~PVilstG~------------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
-+-||+...+|.++++++++. +-.|++|=.. . +-.++...++.+...|-..+++. ...+-+- .
T Consensus 98 kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~-~~~~~~e~~~~l~~~g~~~ii~t-dI~~dGt-~ 174 (232)
T PRK13586 98 ALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKE-KSMEVIDGIKKVNELELLGIIFT-YISNEGT-T 174 (232)
T ss_pred EEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCee-CCCCHHHHHHHHHhcCCCEEEEe-ccccccc-C
Confidence 999999999999999997643 2344432211 1 22234455556666676565544 3332111 0
Q ss_pred CCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 175 LIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 175 ~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.=.|+..+..+++...||++ + +|.+.. ..+... ..+|++|+++=+-+
T Consensus 175 ~G~d~el~~~~~~~~~~via--s------------------GGv~s~-~Dl~~l-~~~G~~gvivg~Al 221 (232)
T PRK13586 175 KGIDYNVKDYARLIRGLKEY--A------------------GGVSSD-ADLEYL-KNVGFDYIIVGMAF 221 (232)
T ss_pred cCcCHHHHHHHHhCCCCEEE--E------------------CCCCCH-HHHHHH-HHCCCCEEEEehhh
Confidence 11356667777663345655 1 122211 233332 36799999987654
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=80.96 E-value=3.8 Score=39.20 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=47.0
Q ss_pred hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 106 VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 106 ~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
.+|++-|.+-.-.+.++..++.+.||+|++.+.++.|++|.+..++..++.|
T Consensus 64 ~iD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~ 115 (344)
T PRK10206 64 DVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKG 115 (344)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhC
Confidence 6999999999999999999999999999999999999999999888666554
|
|
| >COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.74 E-value=46 Score=31.97 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=42.7
Q ss_pred HHHHHHh----cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC--cEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEe
Q 022892 122 LLVAAAK----TGKIINIKKGQFCASSVMVNSAEKVRLAGNP--NVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVAD 195 (290)
Q Consensus 122 lL~~~a~----~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~--~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D 195 (290)
.|+++|+ ++.|+..-|... + --.+.++.+.+.|-+ ++.|+||+-+ ++ |+.....|+..|.-+.||
T Consensus 153 ~lrAaA~A~~~Tg~Pi~tHt~~g-t--~g~eq~~il~~egvdl~~v~igH~d~n---~d---d~~y~~~l~~~Ga~l~fD 223 (316)
T COG1735 153 SLRAAARAHKETGAPISTHTPAG-T--MGLEQLRILAEEGVDLRKVSIGHMDPN---TD---DVYYQKKLADRGAFLEFD 223 (316)
T ss_pred HHHHHHHHhhhcCCCeEEeccch-h--hhHHHHHHHHHcCCChhHeeEeccCCC---CC---hHHHHHHHHhcCceEEec
Confidence 4577664 688999888776 5 445667788888853 7999999843 11 334455555445555554
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=80.62 E-value=55 Score=31.55 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=84.5
Q ss_pred HhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh
Q 022892 8 FNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA 85 (290)
Q Consensus 8 ~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~ 85 (290)
++.+.+ ..+++.++++. +. ..++.+..|++. | +|+|...+= +|.. ...+..++.+++.
T Consensus 75 vrk~k~-~~L~v~~SvG~--t~-e~~~r~~~lv~a----~~~~d~i~~D~a-----------hg~s-~~~~~~i~~i~~~ 134 (321)
T TIGR01306 75 IKDMQE-RGLFASISVGV--KA-CEYEFVTQLAEE----ALTPEYITIDIA-----------HGHS-NSVINMIKHIKTH 134 (321)
T ss_pred HHhccc-cccEEEEEcCC--CH-HHHHHHHHHHhc----CCCCCEEEEeCc-----------cCch-HHHHHHHHHHHHh
Confidence 445433 34577777775 33 457888888874 6 687766421 1222 4567777778778
Q ss_pred cCCc-EEE-eecCcccHHHHhh-hcceeccc---CCcc----------C--CHHHHHHHH-hcCCeEEEeCCCCCCHHHH
Q 022892 86 YDIP-IVT-DVHETVQCEEVGK-VADIIQIP---AFLC----------R--QTDLLVAAA-KTGKIINIKKGQFCASSVM 146 (290)
Q Consensus 86 ~Gi~-~~s-~~~d~~~~~~l~~-~~d~~kIg---s~~~----------~--n~~lL~~~a-~~~~PVilstG~~~tl~e~ 146 (290)
+..+ ++. .+-+.+.+..+.+ .+|.++|| .+.+ . +..-+..++ ..+.||+..-|.. +-.++
T Consensus 135 ~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr-~~~Di 213 (321)
T TIGR01306 135 LPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIR-THGDI 213 (321)
T ss_pred CCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcC-cHHHH
Confidence 8766 555 4788888888887 79999988 2221 1 223344444 3478999999998 88888
Q ss_pred HHHHHHHHHcCCCcEEE
Q 022892 147 VNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 147 ~~Ave~i~~~Gn~~i~L 163 (290)
..|+. .|.+-+++
T Consensus 214 ~KALa----~GAd~Vmi 226 (321)
T TIGR01306 214 AKSIR----FGASMVMI 226 (321)
T ss_pred HHHHH----cCCCEEee
Confidence 87754 36654444
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK14725 pyruvate kinase; Provisional | Back alignment and domain information |
|---|
Probab=80.54 E-value=23 Score=37.02 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHhc---CCcEEEeecCcccHHHHhhh---c-----ceecccCCcc-----------CCHHHHHHHHhcC
Q 022892 73 VEGLKILEKVKIAY---DIPIVTDVHETVQCEEVGKV---A-----DIIQIPAFLC-----------RQTDLLVAAAKTG 130 (290)
Q Consensus 73 ~~~l~~L~~~~~~~---Gi~~~s~~~d~~~~~~l~~~---~-----d~~kIgs~~~-----------~n~~lL~~~a~~~ 130 (290)
.+.+..++++..+. ++.+++-+-.++.++-+.+. . |-+-|+=+|+ .|-.++..+-..+
T Consensus 456 ~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi~~e~lp~iQk~Ii~~c~~~~ 535 (608)
T PRK14725 456 PEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEVGFERLAEVQEEILWLCEAAH 535 (608)
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccccCHHHHHHHHHHHHHHHHHcC
Confidence 47788899998876 58999999999998888773 2 8888888877 4445667777889
Q ss_pred CeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHH
Q 022892 131 KIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMR 186 (290)
Q Consensus 131 ~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk 186 (290)
||||+.|-|- .|-.|+-+++..+ |.+-++|- .. .||. .++.+|.
T Consensus 536 kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv---gaD~VMLS--~G--~yPv-----eAV~~l~ 587 (608)
T PRK14725 536 VPVIWATQVLESLAKKGLPSRAEITDAAMAL---RAECVMLN--KG--PHIV-----EAVRVLD 587 (608)
T ss_pred CCEEEEcchHhhhccCCCCCchhHHHHHhhh---cCCEEeec--CC--CCHH-----HHHHHHH
Confidence 9999977653 2557777777666 66666665 22 3764 3555553
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=80.52 E-value=59 Score=31.68 Aligned_cols=113 Identities=23% Similarity=0.206 Sum_probs=70.3
Q ss_pred cceecccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhH
Q 022892 107 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 182 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i 182 (290)
-.=|.||++++.|...+++ +-.++.||||..... +. .+ +| ++. + ...+
T Consensus 13 ~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~-~~-------~~-------------~g----~~~--~-~~~~ 64 (347)
T TIGR01521 13 EFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRG-AR-------SY-------------AG----APF--L-RHLI 64 (347)
T ss_pred HcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcc-hh-------hh-------------CC----HHH--H-HHHH
Confidence 4557899999999876654 345788888887765 21 00 11 100 0 1233
Q ss_pred HHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe-eeCCCCCCCCCCCCCCChH
Q 022892 183 EWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME-VHDDPLNAPVDGPTQWPLR 259 (290)
Q Consensus 183 ~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE-kH~t~dka~~D~~~sl~p~ 259 (290)
..+.+ . .+||.+--||+. . ......|+.+|...+||- +|. +|....++++
T Consensus 65 ~~~ae~~~~VPValHLDHg~----------------~-----~e~i~~Ai~~GFtSVMiDgS~l------~~~~~~~p~e 117 (347)
T TIGR01521 65 LAAIEEYPHIPVVMHQDHGN----------------S-----PATCQRAIQLGFTSVMMDGSLR------EDAKTPADYD 117 (347)
T ss_pred HHHHHhCCCCcEEEECCCCC----------------C-----HHHHHHHHHcCCCEEeecCcCC------cccCCCCCHH
Confidence 33444 5 499999888983 2 566778899999999987 443 3455566666
Q ss_pred HHHHHHHHHHHHHHH
Q 022892 260 NLEELLEELVAIAKV 274 (290)
Q Consensus 260 ~l~~lv~~ir~~~~~ 274 (290)
|==++.+++-++...
T Consensus 118 ENI~~Tkevve~Ah~ 132 (347)
T TIGR01521 118 YNVRVTAEVVAFAHA 132 (347)
T ss_pred HHHHHHHHHHHHHHH
Confidence 654555554444444
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=80.33 E-value=45 Score=30.18 Aligned_cols=61 Identities=7% Similarity=0.103 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcceecccCCccCCHHHHHHHHh-cCCeEEEe
Q 022892 74 EGLKILEKVKIAYDIPIVTD--VHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAK-TGKIINIK 136 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~-~~~PVils 136 (290)
..+..+++++++.++|+... +-+.++++.+.+ .++-.-||+... |.++++++++ .+. |++|
T Consensus 60 ~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~-~~~~l~~~~~~~g~-ivvs 124 (228)
T PRK04128 60 KNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF-DLEFLEKVTSEFEG-ITVS 124 (228)
T ss_pred chHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc-CHHHHHHHHHHcCC-EEEE
Confidence 35778888888899999885 888999888777 699999999998 9999999874 344 5553
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=80.31 E-value=6.2 Score=37.48 Aligned_cols=54 Identities=22% Similarity=0.124 Sum_probs=46.6
Q ss_pred Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 103 VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 103 l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
+++ .+|++-|.+-.-.+.++..++.+.||+|++.+.++.|++|....++..++.
T Consensus 60 l~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 114 (346)
T PRK11579 60 FNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSA 114 (346)
T ss_pred hcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 443 699999999999999999999999999999999999999888877755544
|
|
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=80.27 E-value=29 Score=33.13 Aligned_cols=146 Identities=19% Similarity=0.190 Sum_probs=72.8
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
+.+++.+.|++ |+ ..++.+.+ .++++..+.+.-. .++++.+-..+..|+..-+ |.++.+.+. +.|
T Consensus 91 ~~~~~~~~~~~-----~~-~~~~~~~~~~~~~v~~~~G~p~-~~~i~~l~~~gi~v~~~v~---s~~~A~~a~----~~G 156 (330)
T PF03060_consen 91 VLELCIEEGVP-----FE-EQLDVALEAKPDVVSFGFGLPP-PEVIERLHAAGIKVIPQVT---SVREARKAA----KAG 156 (330)
T ss_dssp HHHHHHHTT-S-----HH-HHHHHHHHS--SEEEEESSSC--HHHHHHHHHTT-EEEEEES---SHHHHHHHH----HTT
T ss_pred HHHHHHHhCcc-----cc-cccccccccceEEEEeecccch-HHHHHHHHHcCCccccccC---CHHHHHHhh----hcC
Confidence 34555666666 22 22333333 4566666665543 3566778888988888665 777776554 345
Q ss_pred CCcEEEEeecCCCCCCCCCCC--chhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCC
Q 022892 158 NPNVMVCERGTMFGYNDLIVD--PRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGV 234 (290)
Q Consensus 158 n~~i~L~~~gs~~~y~~~~~d--L~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA 234 (290)
.+.++++-.-.=+..-..+. +.-++.+++ ..+||+.= |+-..| .. ..+|.++||
T Consensus 157 -~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaA----------------GGI~dg-----~~-iaaal~lGA 213 (330)
T PF03060_consen 157 -ADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAA----------------GGIADG-----RG-IAAALALGA 213 (330)
T ss_dssp --SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEE----------------SS--SH-----HH-HHHHHHCT-
T ss_pred -CCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEe----------------cCcCCH-----HH-HHHHHHcCC
Confidence 46666662111011111122 344555666 78999871 111112 23 347799999
Q ss_pred CEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHH
Q 022892 235 DGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEE 267 (290)
Q Consensus 235 ~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ 267 (290)
+|+.+=+-|-.-+ -|-.++.+++.+-+
T Consensus 214 ~gV~~GTrFl~t~------Es~~~~~~K~~l~~ 240 (330)
T PF03060_consen 214 DGVQMGTRFLATE------ESGASDAYKQALVD 240 (330)
T ss_dssp SEEEESHHHHTST------TS-S-HHHHHHHHH
T ss_pred CEeecCCeEEecc------cccChHHHHHHHHh
Confidence 9999988874322 23334466665544
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=80.24 E-value=34 Score=30.48 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=36.6
Q ss_pred cceecccCCc------cCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 107 ADIIQIPAFL------CRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 107 ~d~~kIgs~~------~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
++++-+-+.+ -.|+++++++.+ .+.||+.+-|.. +++++..++. ..|..-+++
T Consensus 167 ~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~-s~~di~~~l~---~~gadgV~v 226 (232)
T TIGR03572 167 AGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAG-SLDDLVEVAL---EAGASAVAA 226 (232)
T ss_pred CCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHH---HcCCCEEEE
Confidence 5555554422 256889888764 589999999999 9999887543 345554544
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes | Back alignment and domain information |
|---|
Probab=80.21 E-value=9.6 Score=37.59 Aligned_cols=151 Identities=17% Similarity=0.131 Sum_probs=87.7
Q ss_pred hhHHhhhc-CCCCeEEEEccCCccCHHHHHHHHHHHHHHHHH---------cCCCEEeccccccCCCCCcccCCCCChhH
Q 022892 5 TALFNQLK-AAEPFFLLAGPNVIESEEHIMRMAKHIKSISTK---------VGLPLVFKSSFDKANRTSSKSFRGPGMVE 74 (290)
Q Consensus 5 ~~~~~~i~-~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~---------~G~~~V~~~~~~k~~rts~~~~~g~~~~~ 74 (290)
|.||+-=+ .-+|+.+-.++|-..+.+..-...+++.++..+ .|+|.|....-..+| .++
T Consensus 17 tVLfrhE~tf~Npp~iAieV~D~~~e~~~~~~~~~~~~v~~dwak~rVge~~~~D~Ialr~~S~DP-----------ae~ 85 (386)
T PF03599_consen 17 TVLFRHEKTFPNPPVIAIEVSDTMPEEEIEAKVERIKDVQFDWAKKRVGEFLGADMIALRLESGDP-----------AEE 85 (386)
T ss_dssp SSSSTTCS--SS--EEEEEEESSS-HCHHHHHHHHHTTTCCEHHHHCCCEEEE-SEEEEE-GGGST-----------HHH
T ss_pred ceeecCCcCCCCCCeEEEEEeCCCChhhHHHHHHHHhhhhhhhhhhhhhhhccccEEEEEecCCCh-----------HHH
Confidence 44555433 345666666777654444444455555433221 234444332111101 134
Q ss_pred HHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcc--eecccCCccCCHHHHHHHH-hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVAD--IIQIPAFLCRQTDLLVAAA-KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d--~~kIgs~~~~n~~lL~~~a-~~~~PVilstG~~~tl~e~~~Ave 151 (290)
-.+..+++++..++|.+---+|++.+....+.+. -.-|++.+-.|+.=+-++| ..+.||+++... ++++..+-..
T Consensus 86 fa~~vk~V~~a~~~PLIL~~~D~evl~aale~~~~~kpLL~aAt~eNyk~m~~lA~~y~~pl~v~sp~--Dln~lk~Ln~ 163 (386)
T PF03599_consen 86 FAKAVKKVAEAVDVPLILCGCDPEVLKAALEACAGKKPLLYAATEENYKAMAALAKEYGHPLIVSSPI--DLNLLKQLNI 163 (386)
T ss_dssp HHHHHHHHHHC-SSEEEEESSHHHHHHHHHHHTTTS--EEEEEBTTTHHHHHHHHHHCT-EEEEE-SS--CHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHhCcCCcEEeEcCHHHHHHHHHHHHHcCCeEEEEecc--cHHHHHHHHH
Confidence 5566788888899999998889988888777433 4457777778987555555 568899998764 5999999999
Q ss_pred HHHHcCCCcEEEEeecCC
Q 022892 152 KVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~ 169 (290)
.+...|..+|+ +.-|+.
T Consensus 164 ~l~~~Gv~dIV-lDpgt~ 180 (386)
T PF03599_consen 164 KLTELGVKDIV-LDPGTR 180 (386)
T ss_dssp HHHTTT-GGEE-EE---S
T ss_pred HHHhcCcccEE-ecCCcc
Confidence 99999987755 455553
|
; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=80.16 E-value=41 Score=31.85 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=51.2
Q ss_pred cceecccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhH
Q 022892 107 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 182 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i 182 (290)
-.=|.||++++.|.+.+++ +-..+.||||..+.. ++. +. ++.. + ...+
T Consensus 15 ~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~-~~~--------------------~~----~~~~--~-~~~~ 66 (286)
T PRK12738 15 ANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPG-TFK--------------------HI----ALEE--I-YALC 66 (286)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcc-hhh--------------------hC----CHHH--H-HHHH
Confidence 4456778888888765544 345677777775543 111 00 0100 0 1223
Q ss_pred HHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 183 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 183 ~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
..+.+ +.+||.+--||+. . ......|+.+|...+|+-
T Consensus 67 ~~~a~~~~VPValHLDHg~----------------~-----~e~i~~ai~~GFtSVM~D 104 (286)
T PRK12738 67 SAYSTTYNMPLALHLDHHE----------------S-----LDDIRRKVHAGVRSAMID 104 (286)
T ss_pred HHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHcCCCeEeec
Confidence 33444 7899999888873 2 566777889999888775
|
|
| >PRK06498 isocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.12 E-value=7.8 Score=39.37 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=50.5
Q ss_pred CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC-CCCCC-CCCCCCCChHHHHHHHHH
Q 022892 190 CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD-PLNAP-VDGPTQWPLRNLEELLEE 267 (290)
Q Consensus 190 ~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t-~dka~-~D~~~sl~p~~l~~lv~~ 267 (290)
+||+.|.|-+- |...-+..+.+.-+.+||.|+.||-... |.|-- -+++.-++.+++-.=++.
T Consensus 179 iPIIADaDtGf----------------G~~~nv~r~vk~~ieAGAAgIhIEDQv~~~KkCGHl~GK~lVp~ee~i~KI~A 242 (531)
T PRK06498 179 VPIIADIDAGF----------------GNEEATYLLAKKMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKIRA 242 (531)
T ss_pred cceEEEcCCCC----------------CcHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCCCCEeccHHHHHHHHHH
Confidence 69999998763 3333345556667789999999998865 34432 267777777777766666
Q ss_pred HHHHHHHhCCc
Q 022892 268 LVAIAKVSKGK 278 (290)
Q Consensus 268 ir~~~~~lg~~ 278 (290)
.|.....+|..
T Consensus 243 Ar~A~d~~G~~ 253 (531)
T PRK06498 243 VRYAFLELGVD 253 (531)
T ss_pred HHHHHHhcCCC
Confidence 66666666653
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=80.10 E-value=22 Score=31.00 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKT--GKIINIKKGQFCASSVMVN 148 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~ 148 (290)
..+.+++++.|++++-.+.+++++....+ .+|++++-.....-..+++.+.+. +.|++-.-|. +++++..
T Consensus 87 ~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a~GGI--~~~n~~~ 159 (190)
T cd00452 87 PEVVKAANRAGIPLLPGVATPTEIMQALELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMPTGGV--SLDNAAE 159 (190)
T ss_pred HHHHHHHHHcCCcEECCcCCHHHHHHHHHCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEEeCCC--CHHHHHH
Confidence 35777888899999999999999877766 699999865444556777777543 4777777775 4665544
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=80.04 E-value=15 Score=37.71 Aligned_cols=105 Identities=12% Similarity=0.075 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccC
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
+....++.+...|.+.+++.-.+|.. .+.. +.++ ...+...|+.++.|.+++.|.. .++
T Consensus 82 ~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~------------D~~ 149 (526)
T TIGR00977 82 EEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFF------------DGY 149 (526)
T ss_pred chHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeee------------ecc
Confidence 44556666777788888887776521 1111 1111 1234444556778888777752 011
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 216 GGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 216 ~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
.-.++++..++.++..+||+-+.| +|---.+.|.++.++++.+++.
T Consensus 150 r~~~~~l~~~~~~a~~aGad~i~i----------~DTvG~~~P~~v~~li~~l~~~ 195 (526)
T TIGR00977 150 KANPEYALATLATAQQAGADWLVL----------CDTNGGTLPHEISEITTKVKRS 195 (526)
T ss_pred cCCHHHHHHHHHHHHhCCCCeEEE----------ecCCCCcCHHHHHHHHHHHHHh
Confidence 123577888899999999984322 6888899999999999998753
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 290 | ||||
| 2nx3_A | 267 | Structural And Mechanistic Changes Along An Enginee | 5e-66 | ||
| 2nwr_A | 267 | Crystal Structure Of C11n Mutant Of Kdo8p Synthase | 5e-66 | ||
| 2nxg_A | 263 | Structural And Mechanistic Changes Along An Enginee | 6e-66 | ||
| 2nxi_A | 263 | Structural And Mechanistic Changes Along An Enginee | 5e-65 | ||
| 2ef9_A | 267 | Structural And Mechanistic Changes Along An Enginee | 7e-65 | ||
| 1fwn_A | 267 | Aquifex Aeolicus Kdo8p Synthase In Complex With Pep | 9e-65 | ||
| 1t8x_A | 267 | R106g Kdo8ps With Pep And A5p Length = 267 | 9e-64 | ||
| 1lrn_A | 267 | Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Com | 2e-63 | ||
| 3tml_A | 288 | Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctona | 3e-63 | ||
| 1d9e_A | 284 | Structure Of E. Coli Kdo8p Synthase Length = 284 | 1e-62 | ||
| 2qkf_A | 280 | Crystal Structure Of 3-Deoxy-D-Manno-Octulosonate 8 | 1e-62 | ||
| 3t4c_A | 288 | Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctona | 1e-62 | ||
| 3qpy_A | 280 | Crystal Structure Of A Mutant (K57a) Of 3-Deoxy-D-M | 5e-62 | ||
| 3ste_A | 280 | Crystal Structure Of A Mutant (Q202a) Of 3-Deoxy-D- | 7e-62 | ||
| 3qpz_A | 280 | Crystal Structure Of The N59a Mutant Of The 3-Deoxy | 8e-62 | ||
| 1g7u_A | 284 | Crystal Structures Of Kdo8p Synthase In Its Binary | 1e-61 | ||
| 3qq0_A | 279 | Crystal Structure Of A Deletion Mutant (N59) Of 3-D | 1e-60 | ||
| 1o60_A | 292 | Crystal Structure Of Kdo-8-Phosphate Synthase Lengt | 2e-60 | ||
| 3fyo_A | 280 | Crystal Structure Of The Triple Mutant (N23cD247EP2 | 3e-60 | ||
| 3fyp_A | 280 | Crystal Structure Of The Quadruple Mutant (n23c/c24 | 4e-60 | ||
| 3qq1_A | 279 | Crystal Structure Of A Double Mutant [a58p, Del(N59 | 7e-60 | ||
| 3sz8_A | 285 | Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctona | 2e-59 | ||
| 3e9a_A | 286 | Crystal Structure Of 2-dehydro-3-deoxyphosphooctona | 2e-59 | ||
| 3stf_A | 280 | Crystal Structure Of A Mutant (S211a) Of 3-Deoxy-D- | 3e-59 | ||
| 3stc_A | 269 | Crystal Structure Of Loop 7 Truncated Mutant Of 3-D | 3e-58 | ||
| 3fs2_A | 298 | Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctona | 1e-56 | ||
| 3stg_A | 268 | Crystal Structure Of A58p, Del(N59), And Loop 7 Tru | 2e-55 | ||
| 1zco_A | 262 | Crystal Structure Of Pyrococcus Furiosus 3-Deoxy-D- | 3e-23 | ||
| 4grs_A | 333 | Crystal Structure Of A Chimeric Dah7ps Length = 333 | 3e-21 | ||
| 3nvt_A | 385 | 1.95 Angstrom Crystal Structure Of A Bifunctional 3 | 4e-21 | ||
| 3pg8_A | 272 | Truncated Form Of 3-Deoxy-D-Arabino-Heptulosonate 7 | 4e-19 | ||
| 1rzm_A | 338 | Crystal Structure Of 3-Deoxy-D-Arabino-Heptulosonat | 1e-18 | ||
| 1vr6_A | 350 | Crystal Structure Of Phospho-2-dehydro-3-deoxyhepto | 1e-18 | ||
| 1vs1_A | 276 | Crystal Structure Of 3-Deoxy-D-Arabino-Heptulosonat | 1e-09 |
| >pdb|2NX3|A Chain A, Structural And Mechanistic Changes Along An Engineered Path From Metallo To Non-Metallo Kdo8p Synthase Length = 267 | Back alignment and structure |
|
| >pdb|2NWR|A Chain A, Crystal Structure Of C11n Mutant Of Kdo8p Synthase In Complex With Pep Length = 267 | Back alignment and structure |
|
| >pdb|2NXG|A Chain A, Structural And Mechanistic Changes Along An Engineered Path From Metallo To Non-Metallo Kdo8p Synthase. Length = 263 | Back alignment and structure |
|
| >pdb|2NXI|A Chain A, Structural And Mechanistic Changes Along An Engineered Path From Metallo To Non-Metallo Kdo8p Synthase. Length = 263 | Back alignment and structure |
|
| >pdb|2EF9|A Chain A, Structural And Mechanistic Changes Along An Engineered Path From Metallo To Non-Metallo Kdo8p Synthase Length = 267 | Back alignment and structure |
|
| >pdb|1FWN|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep Length = 267 | Back alignment and structure |
|
| >pdb|1T8X|A Chain A, R106g Kdo8ps With Pep And A5p Length = 267 | Back alignment and structure |
|
| >pdb|1LRN|A Chain A, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex With Cadmium Length = 267 | Back alignment and structure |
|
| >pdb|3TML|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate Aldolase From Burkholderia Cenocepacia Length = 288 | Back alignment and structure |
|
| >pdb|1D9E|A Chain A, Structure Of E. Coli Kdo8p Synthase Length = 284 | Back alignment and structure |
|
| >pdb|2QKF|A Chain A, Crystal Structure Of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (Kdo8ps) From Neisseria Meningitidis Length = 280 | Back alignment and structure |
|
| >pdb|3T4C|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate Aldolase From Burkholderia Ambifaria Length = 288 | Back alignment and structure |
|
| >pdb|3QPY|A Chain A, Crystal Structure Of A Mutant (K57a) Of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (Kdo8ps) From Neisseria Meningitidis Length = 280 | Back alignment and structure |
|
| >pdb|3STE|A Chain A, Crystal Structure Of A Mutant (Q202a) Of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (Kdo8ps) From Neisseria Meningitidis Length = 280 | Back alignment and structure |
|
| >pdb|3QPZ|A Chain A, Crystal Structure Of The N59a Mutant Of The 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (Kdo8ps) From Neisseria Meningitidis Length = 280 | Back alignment and structure |
|
| >pdb|1G7U|A Chain A, Crystal Structures Of Kdo8p Synthase In Its Binary Complex With Substrate Phosphoenol Pyruvate Length = 284 | Back alignment and structure |
|
| >pdb|3QQ0|A Chain A, Crystal Structure Of A Deletion Mutant (N59) Of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (Kdo8ps) From Neisseria Meningitidis Length = 279 | Back alignment and structure |
|
| >pdb|1O60|A Chain A, Crystal Structure Of Kdo-8-Phosphate Synthase Length = 292 | Back alignment and structure |
|
| >pdb|3FYO|A Chain A, Crystal Structure Of The Triple Mutant (N23cD247EP249A) OF 3-Deoxy- D-Manno-Octulosonate 8-Phosphate Synthase (Kdo8ps) From Neisseria Meningitidis Length = 280 | Back alignment and structure |
|
| >pdb|3FYP|A Chain A, Crystal Structure Of The Quadruple Mutant (n23c/c246s/d247e/p249a) Of 3-deoxy-d-manno-octulosonate 8-phosphate Synthase (kdo8ps) From Neisseria Meningitidis Length = 280 | Back alignment and structure |
|
| >pdb|3QQ1|A Chain A, Crystal Structure Of A Double Mutant [a58p, Del(N59)] Of 3-Deoxy-D- Manno-Octulosonate 8-Phosphate Synthase (Kdo8ps) From Neisseria Meningitidis Length = 279 | Back alignment and structure |
|
| >pdb|3SZ8|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate Aldolase From Burkholderia Pseudomallei Length = 285 | Back alignment and structure |
|
| >pdb|3E9A|A Chain A, Crystal Structure Of 2-dehydro-3-deoxyphosphooctonate Aldolase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 Length = 286 | Back alignment and structure |
|
| >pdb|3STF|A Chain A, Crystal Structure Of A Mutant (S211a) Of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (Kdo8ps) From Neisseria Meningitidis Length = 280 | Back alignment and structure |
|
| >pdb|3STC|A Chain A, Crystal Structure Of Loop 7 Truncated Mutant Of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (Kdo8ps) From Neisseria Meningitidis Length = 269 | Back alignment and structure |
|
| >pdb|3FS2|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate Aldolase From Bruciella Melitensis At 1.85a Resolution Length = 298 | Back alignment and structure |
|
| >pdb|3STG|A Chain A, Crystal Structure Of A58p, Del(N59), And Loop 7 Truncated Mutant Of 3- Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (Kdo8ps) From Neisseria Meningitidis Length = 268 | Back alignment and structure |
|
| >pdb|1ZCO|A Chain A, Crystal Structure Of Pyrococcus Furiosus 3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase Length = 262 | Back alignment and structure |
|
| >pdb|4GRS|A Chain A, Crystal Structure Of A Chimeric Dah7ps Length = 333 | Back alignment and structure |
|
| >pdb|3NVT|A Chain A, 1.95 Angstrom Crystal Structure Of A Bifunctional 3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE (AROA) FROM LISTERIA Monocytogenes Egd-E Length = 385 | Back alignment and structure |
|
| >pdb|3PG8|A Chain A, Truncated Form Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase From Thermotoga Maritima Length = 272 | Back alignment and structure |
|
| >pdb|1RZM|A Chain A, Crystal Structure Of 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase (Dahps) From Thermotoga Maritima Complexed With Cd2+, Pep And E4p Length = 338 | Back alignment and structure |
|
| >pdb|1VR6|A Chain A, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate Aldolase (dahp Synthase) (tm0343) From Thermotoga Maritima At 1.92 A Resolution Length = 350 | Back alignment and structure |
|
| >pdb|1VS1|A Chain A, Crystal Structure Of 3-Deoxy-D-Arabino-Heptulosonate-7- Phosphate Synthase (Dahp Synthase) From Aeropyrum Pernix In Complex With Mn2+ And Pep Length = 276 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A Length = 288 | Back alignment and structure |
|---|
Score = 461 bits (1189), Expect = e-166
Identities = 133/277 (48%), Positives = 173/277 (62%), Gaps = 11/277 (3%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
+PFFL+AG V+ESE+ + A +K I K+ +P ++KSS+DKANR+S KSFRG GM E
Sbjct: 16 QPFFLIAGTCVVESEQMTIDTAGRLKEICEKLNVPFIYKSSYDKANRSSGKSFRGLGMDE 75
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GL+IL +VK +P++TDVH + E+V V D++Q PAFLCRQTD + A A++GK +N
Sbjct: 76 GLRILSEVKRQLGLPVLTDVHSIDEIEQVASVVDVLQTPAFLCRQTDFIHACARSGKPVN 135
Query: 135 IKKGQFCASSVMVNSAEKVRLAG------NPNVMVCERGTMFGYNDLIVDPRNLEWMREA 188
IKKGQF A M N +K R A M CERG FGYN+L+ D R+L MRE
Sbjct: 136 IKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVSFGYNNLVSDMRSLAIMRET 195
Query: 189 NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA 248
N PVV D THS+Q P G G +SGG RE +P +AR A+A GV G+FME H +P A
Sbjct: 196 NAPVVFDATHSVQLP-----GGQGTSSGGQREFVPVLARAAVATGVAGLFMETHPNPAEA 250
Query: 249 PVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDL 285
DGP PL + LLE LV + + K + D
Sbjct: 251 KSDGPNAVPLNRMGALLETLVTLDQAVKRNPFLENDF 287
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A Length = 292 | Back alignment and structure |
|---|
Score = 461 bits (1188), Expect = e-166
Identities = 125/275 (45%), Positives = 176/275 (64%), Gaps = 7/275 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
+PF L G NV+ES + M++ + ++ K+G+P VFK+SFDKANR+S S+RGPGM E
Sbjct: 17 KPFVLFGGMNVLESRDMAMQVCEAYVKVTEKLGVPYVFKASFDKANRSSIHSYRGPGMEE 76
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GLKI +++K + + I+TDVHE QC+ V V DIIQ+PAFL RQTDL+ A AKTG +IN
Sbjct: 77 GLKIFQELKDTFGVKIITDVHEIYQCQPVADVVDIIQLPAFLARQTDLVEAMAKTGAVIN 136
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREA--NCPV 192
+KK QF + S M N EK+ GN +++C+RGT FGY++LIVD M++A PV
Sbjct: 137 VKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTNFGYDNLIVDMLGFSVMKKASKGSPV 196
Query: 193 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDG 252
+ DVTHSLQ D G AS G R + +AR+ +AVG+ G+F+E H +P A DG
Sbjct: 197 IFDVTHSLQCR-----DPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHPNPNQAKCDG 251
Query: 253 PTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTP 287
P+ PL LE + ++ AI + K ++ +
Sbjct: 252 PSALPLSALEGFVSQMKAIDDLVKSFPELDTSIGS 286
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* Length = 280 | Back alignment and structure |
|---|
Score = 460 bits (1187), Expect = e-166
Identities = 126/272 (46%), Positives = 173/272 (63%), Gaps = 7/272 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
PF L G NV+ES + ++ H ++ K+G+P +FK+SFDKANR+S S+RG G+ E
Sbjct: 14 SPFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEE 73
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GLKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++N
Sbjct: 74 GLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVN 133
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPV 192
IKK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N PV
Sbjct: 134 IKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPV 193
Query: 193 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDG 252
+ DVTHSLQ D G ASGG R +A +A + G+F+E H DP A DG
Sbjct: 194 IFDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCDG 248
Query: 253 PTQWPLRNLEELLEELVAIAKVSKGKQRMNID 284
P+ PL LE+ L + A+ + K + + I+
Sbjct: 249 PSALPLHLLEDFLIRIKALDDLIKSQPILTIE 280
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* Length = 285 | Back alignment and structure |
|---|
Score = 458 bits (1180), Expect = e-165
Identities = 124/271 (45%), Positives = 170/271 (62%), Gaps = 7/271 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
PF L G NV+ES + + + +++ K+G+P VFK+SFDKANR+S S+RG G+ E
Sbjct: 19 LPFVLFGGINVLESLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDE 78
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GLKI +VK + +P++TDVHE Q V ++AD++Q+PAFL RQTDL+VA AK GK +N
Sbjct: 79 GLKIFAEVKARFGVPVITDVHEAEQAAPVAEIADVLQVPAFLARQTDLVVAIAKAGKPVN 138
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPV 192
+KK QF + + + + K GN VM+CERG+ FGY++L+VD M E CPV
Sbjct: 139 VKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPV 198
Query: 193 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDG 252
+ DVTHSLQ D G ASGG R + +AR IAVG+ G+F+E H DP A DG
Sbjct: 199 IFDVTHSLQCR-----DPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRARCDG 253
Query: 253 PTQWPLRNLEELLEELVAIAKVSKGKQRMNI 283
P+ PL LE LL ++ AI + K + I
Sbjct: 254 PSALPLHQLEGLLSQMKAIDDLVKRMPALEI 284
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} Length = 298 | Back alignment and structure |
|---|
Score = 457 bits (1178), Expect = e-164
Identities = 127/263 (48%), Positives = 174/263 (66%), Gaps = 5/263 (1%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
P L+AGP +E+ +H MA +K ++ K+G+ LV+KSSFDKANRTS K+ RG G+ +
Sbjct: 40 APLALIAGPCQMETRDHAFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLKAARGIGLEK 99
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
L++ +K Y P++TD+H QC V V D++QIPAFLCRQTDLL+AAA+TG+++N
Sbjct: 100 ALEVFSDLKKEYGFPVLTDIHTEEQCAAVAPVVDVLQIPAFLCRQTDLLIAAARTGRVVN 159
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 194
+KKGQF A M N K+ +GNPNV+ ERG FGYN L+ D R L M PV+
Sbjct: 160 VKKGQFLAPWDMKNVLAKITESGNPNVLATERGVSFGYNTLVSDMRALPIMAGLGAPVIF 219
Query: 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254
D THS+QQP G G ++GG RE + +AR A+AVGV G F+E H+DP NAP DGP
Sbjct: 220 DATHSVQQP-----GGQGGSTGGQREFVETLARAAVAVGVAGFFIETHEDPDNAPSDGPN 274
Query: 255 QWPLRNLEELLEELVAIAKVSKG 277
P+ + LLE+L+A +++K
Sbjct: 275 MVPIDKMPALLEKLMAFDRIAKA 297
|
| >2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ... Length = 267 | Back alignment and structure |
|---|
Score = 447 bits (1152), Expect = e-161
Identities = 134/263 (50%), Positives = 176/263 (66%), Gaps = 7/263 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRTSSKSFRGPGMV 73
E F ++AGPN IESEE ++++ + IK +S K + VFKSSFDKANR+S SFRG G+
Sbjct: 2 EKFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLE 61
Query: 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 133
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +
Sbjct: 62 YGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAV 121
Query: 134 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV 193
N+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 122 NVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVI 180
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D
Sbjct: 181 YDATHSVQLP-----GGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAS 235
Query: 254 TQWPLRNLEELLEELVAIAKVSK 276
TQ PL LE ++E ++ I +V+
Sbjct: 236 TQLPLSQLEGIIEAILEIREVAS 258
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* Length = 350 | Back alignment and structure |
|---|
Score = 229 bits (585), Expect = 8e-74
Identities = 76/263 (28%), Positives = 122/263 (46%), Gaps = 26/263 (9%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
F ++AGP +E E +M A + + KV +K RTS SF+G G +
Sbjct: 105 GYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKP------RTSPYSFQGLGE-K 157
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GL+ L + Y + +VT+ +V + ADIIQI A + LL A K +
Sbjct: 158 GLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVL 217
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMREA-NCP 191
+K+G + SAE + +GN +++CERG T +D + +R+ + P
Sbjct: 218 LKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLP 277
Query: 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 251
++ D +H SGG R+L+ ++R AIAVG G+ +EVH +P A D
Sbjct: 278 ILVDPSH----------------SGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSD 321
Query: 252 GPTQWPLRNLEELLEELVAIAKV 274
G +EL++E+ +A
Sbjct: 322 GKQSLDFELFKELVQEMKKLADA 344
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} Length = 262 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 2e-73
Identities = 81/275 (29%), Positives = 134/275 (48%), Gaps = 26/275 (9%)
Query: 2 DPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANR 61
+ + N +K E F ++AGP IES E IM++A+ + +VG+ ++ +F R
Sbjct: 9 EKTVVKINDVKFGEGFTIIAGPCSIESREQIMKVAEFLA----EVGIKVLRGGAFKP--R 62
Query: 62 TSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTD 121
TS SF+G G + L+ + + Y + VT+V +T E V K +DI+QI A + +
Sbjct: 63 TSPYSFQGYG-EKALRWMREAADEYGLVTVTEVMDTRHVELVAKYSDILQIGARNSQNFE 121
Query: 122 LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDP 179
LL K + +K+G ++ SAE + GN NV++CERG T +D
Sbjct: 122 LLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDI 181
Query: 180 RNLEWMREA-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238
+ ++E + P++ D +H G R L+ +A+ A A+G DG+
Sbjct: 182 SAVPVVKELSHLPIIVDPSH----------------PAGRRSLVIPLAKAAYAIGADGIM 225
Query: 239 MEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAK 273
+EVH +P A D Q + +LL+EL A+
Sbjct: 226 VEVHPEPEKALSDSQQQLTFDDFLQLLKELEALGW 260
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} Length = 276 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 2e-73
Identities = 75/258 (29%), Positives = 119/258 (46%), Gaps = 26/258 (10%)
Query: 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGL 76
++AGP +ES E + A +K + FK RTS SF+G G+ EGL
Sbjct: 39 KAVIAGPCSVESWEQVREAALAVKEAGAHMLRGGAFKP------RTSPYSFQGLGL-EGL 91
Query: 77 KILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIK 136
K+L + +P+VT+V + E V + AD++QI A + LL ++GK + +K
Sbjct: 92 KLLRRAGDEAGLPVVTEVLDPRHVETVSRYADMLQIGARNMQNFPLLREVGRSGKPVLLK 151
Query: 137 KGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMREA-NCPVV 193
+G ++ +AE + L GN V++ ERG T +D + ++EA + PV+
Sbjct: 152 RGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVI 211
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
D +H G R L+P +A+ +A G DG+ +EVH +P A D
Sbjct: 212 VDPSH----------------PAGRRSLVPALAKAGLAAGADGLIVEVHPNPEEALSDAK 255
Query: 254 TQWPLRNLEELLEELVAI 271
Q L+ EL
Sbjct: 256 QQLTPGEFARLMGELRWH 273
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* Length = 385 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 2e-71
Identities = 77/263 (29%), Positives = 122/263 (46%), Gaps = 26/263 (9%)
Query: 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGL 76
+ GP +ES E + +A+ IK GL L+ +F RTS F+G G+ EGL
Sbjct: 143 PVFVFGPCSVESYEQVAAVAESIK----AKGLKLIRGGAFKP--RTSPYDFQGLGL-EGL 195
Query: 77 KILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIK 136
KIL++V Y + +++++ E D+IQI A + +LL AA + K I +K
Sbjct: 196 KILKRVSDEYGLGVISEIVTPADIEVALDYVDVIQIGARNMQNFELLKAAGRVDKPILLK 255
Query: 137 KGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMREA-NCPVV 193
+G + +AE + GN +++CERG T +D + +++ + PV+
Sbjct: 256 RGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHLPVM 315
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTH S G ++L+ A+ A+A+ DGV EVH DP A D
Sbjct: 316 VDVTH----------------STGRKDLLLPCAKAALAIEADGVMAEVHPDPAVALSDSA 359
Query: 254 TQWPLRNLEELLEELVAIAKVSK 276
Q + EE ++A V
Sbjct: 360 QQMDIPEFEEFWNAILASNLVPH 382
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 100.0 | |
| 3tml_A | 288 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 100.0 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 100.0 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 100.0 | |
| 2nwr_A | 267 | 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD | 100.0 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 100.0 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 100.0 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 100.0 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 100.0 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 100.0 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 100.0 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 100.0 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 100.0 | |
| 1n8f_A | 350 | DAHP synthetase; (beta/alpha)8 barrel, metal bindi | 100.0 | |
| 1of8_A | 370 | Phospho-2-dehydro-3-deoxyheptonate aldolase, tyros | 100.0 | |
| 3tqk_A | 346 | Phospho-2-dehydro-3-deoxyheptonate aldolase; trans | 100.0 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 97.72 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 97.68 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 97.4 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 97.35 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 97.25 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 97.19 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 97.15 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 97.1 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 97.09 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 97.08 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 97.04 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 97.03 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 96.99 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 96.98 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 96.98 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 96.98 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 96.98 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 96.97 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 96.94 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.92 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 96.89 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 96.87 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 96.84 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 96.84 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 96.78 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 96.7 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.66 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 96.62 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 96.55 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 96.55 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 96.52 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 96.52 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 96.51 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 96.48 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 96.47 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 96.41 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 96.4 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 96.39 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 96.38 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 96.31 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 96.31 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 96.27 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 96.24 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 96.21 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 96.19 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 96.18 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 96.1 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 96.08 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 96.05 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 95.98 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.98 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 95.95 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 95.86 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 95.85 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 95.83 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 95.81 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 95.64 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 95.63 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 95.58 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 95.58 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 95.56 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 95.55 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 95.54 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 95.42 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 95.4 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 95.32 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 95.31 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 95.19 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 95.05 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 95.05 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 94.97 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 94.94 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 94.85 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 94.85 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 94.81 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.8 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 94.72 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 94.66 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 94.6 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 94.56 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 94.52 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 94.48 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 94.48 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 94.48 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 94.48 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 94.45 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 94.44 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 94.44 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 94.43 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 94.43 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 94.39 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 94.38 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 94.31 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 94.26 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 94.21 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 94.1 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 94.05 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 94.0 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 93.91 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 93.87 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 93.84 | |
| 1q7z_A | 566 | 5-methyltetrahydrofolate S-homocysteine methyltran | 93.67 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 93.6 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 93.56 | |
| 4djd_C | 446 | C/Fe-SP, corrinoid/iron-sulfur protein large subun | 93.53 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 93.52 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 93.51 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 93.46 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 93.43 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 93.4 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 93.38 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 93.31 | |
| 2h9a_A | 445 | Carbon monoxide dehydrogenase corrinoid/iron- sulf | 93.3 | |
| 3hg3_A | 404 | Alpha-galactosidase A; glycoprotein, carbohydrate- | 93.28 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 93.25 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 93.18 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 93.09 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 93.04 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 93.0 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 92.95 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 92.71 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 92.68 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 92.63 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 92.42 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 92.33 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 92.32 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 92.31 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 92.28 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 92.27 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 92.18 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 92.07 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 92.06 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 91.97 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 91.91 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 91.81 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 91.79 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 91.79 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 91.62 | |
| 3mcm_A | 442 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine | 91.61 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 91.52 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 91.35 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 91.19 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 91.09 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 91.05 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 91.02 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 90.94 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 90.93 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 90.91 | |
| 2bmb_A | 545 | Folic acid synthesis protein FOL1; folate biosynth | 90.87 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 90.83 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 90.79 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 90.72 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 90.71 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 90.67 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 90.34 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 90.34 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 90.3 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 90.16 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 90.15 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 90.1 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 90.01 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 89.91 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 89.9 | |
| 3qtg_A | 461 | Pyruvate kinase, PK; TIM barrel, glycolysis, trans | 89.72 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 89.71 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 89.7 | |
| 3rzi_A | 462 | Probable 3-deoxy-D-arabino-heptulosonate 7-phosph | 89.7 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 89.55 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 89.5 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 89.4 | |
| 4drs_A | 526 | Pyruvate kinase; glycolysis, allosteric EN transfe | 89.38 | |
| 3tn4_A | 360 | Phosphotriesterase; lactonase, hydrolase; HET: KCX | 89.37 | |
| 3otr_A | 452 | Enolase; structural genomics, center for structura | 89.33 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 89.27 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 89.18 | |
| 3t05_A | 606 | Pyruvate kinase, PK; tetramer, glycolysis, transfe | 89.17 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 89.17 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 89.16 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 89.14 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 89.12 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 89.12 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 89.06 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 89.02 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 89.01 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 89.0 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 88.75 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 88.68 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 88.65 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 88.4 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 88.38 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 88.32 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 88.24 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 88.17 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 88.14 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 88.13 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 88.13 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 88.12 | |
| 3eol_A | 433 | Isocitrate lyase; seattle structural center for in | 87.99 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 87.97 | |
| 3gr4_A | 550 | Pyruvate kinase isozymes M1/M2; activator, acetyla | 87.95 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 87.93 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 87.88 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 87.81 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 87.81 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 87.74 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 87.72 | |
| 3qtp_A | 441 | Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent | 87.7 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 87.64 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 87.58 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 87.53 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 87.44 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 87.44 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 87.38 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 87.21 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 87.0 | |
| 3hqn_D | 499 | Pyruvate kinase, PK; TIM barrel, T-state enzyme, t | 87.0 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 87.0 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 86.91 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 86.82 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 86.78 | |
| 3khd_A | 520 | Pyruvate kinase; malaria, structural genomics, str | 86.69 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 86.67 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 86.65 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 86.6 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 86.58 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 86.57 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 86.54 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 86.38 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 86.31 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 86.29 | |
| 2e28_A | 587 | Pyruvate kinase, PK; allosteric, transferase; 2.40 | 86.27 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 86.26 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 86.08 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 85.94 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 85.9 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 85.84 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 85.76 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 85.76 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 85.71 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 85.68 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 85.59 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 85.46 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 85.44 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 85.42 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 85.39 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 85.37 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 85.28 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 85.24 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 85.0 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 84.9 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 84.85 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 84.74 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 84.69 | |
| 3pnz_A | 330 | Phosphotriesterase family protein; amidohydrolase | 84.59 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 84.53 | |
| 1e0t_A | 470 | Pyruvate kinase, PK; phosphotransferase, glycolysi | 84.4 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 84.35 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 84.33 | |
| 3gg8_A | 511 | Pyruvate kinase; malaria, genomics, proteomics, gl | 84.33 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 84.04 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 83.95 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 83.9 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 83.87 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 83.66 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 83.51 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 83.26 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 83.22 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 83.2 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 83.17 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 83.1 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 83.09 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 82.57 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 82.43 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 82.38 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 82.37 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 82.35 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 82.32 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 82.22 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 82.13 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 82.1 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 82.02 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 81.54 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 81.5 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 81.14 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 81.07 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 80.89 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 80.73 | |
| 1a3w_A | 500 | Pyruvate kinase; allosteric regulation, tranferase | 80.6 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 80.55 | |
| 3lrk_A | 479 | Alpha-galactosidase 1; tetramer, GH27, glycoprotei | 80.37 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 80.28 | |
| 3ixl_A | 240 | Amdase, arylmalonate decarboxylase; enantioselecti | 80.24 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 80.18 |
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-78 Score=559.48 Aligned_cols=266 Identities=46% Similarity=0.749 Sum_probs=244.0
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
.+|.++++++|||||+|||+++.+++|++|+++++++++..|++.+|+|+||||+|+|+|+|+++||++|+++|+++||+
T Consensus 14 ~~G~~~~~~viaGPCsie~~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~L~~~~~e~Glp 93 (285)
T 3sz8_A 14 TAGNSLPFVLFGGINVLESLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVP 93 (285)
T ss_dssp EEETTSCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCC
T ss_pred eECCCCceEEEEeCCcCCCHHHHHHHHHHHHHHHHhheeeeEEEeecccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCe
Confidence 46778899999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred EEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 90 IVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
|+||+||+.+++++.+++|++||||++++|++||+++|+++|||+|||||++|++||++|+++|++.||++|+|||||++
T Consensus 94 ~~Tev~d~~~v~~l~~~vd~lqIgA~~~~n~~LLr~va~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~~ 173 (285)
T 3sz8_A 94 VITDVHEAEQAAPVAEIADVLQVPAFLARQTDLVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSS 173 (285)
T ss_dssp EEEECCSGGGHHHHHTTCSEEEECGGGTTCHHHHHHHHHTSSCEEEECCTTSCGGGTHHHHHHHHHTTCCCEEEEECCEE
T ss_pred EEEEeCCHHHHHHHHHhCCEEEECccccCCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 FGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
|+|+++++||++|+.||+ | ++||++|+||++|+||+ .+++|+|+|++++.+++||+|+||+|+|||+||||||
T Consensus 174 y~~~~~~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~-----~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H~~pd~ 248 (285)
T 3sz8_A 174 FGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDP-----LGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDR 248 (285)
T ss_dssp CSSSCEECCTTHHHHHHHHTTSCCEEEETTTTCC--------------------HHHHHHHHHHHCCSEEEEEEESCGGG
T ss_pred CCCCcCccCHHHHHHHHHhCCCCCEEEeCCCccccCCC-----cCCCCCCchhhHHHHHHHHHHhCCCEEEEEeccChhc
Confidence 999888899999999999 8 59999999999999984 4778889999999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCCccc
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAKVSKGKQR 280 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~~~ 280 (290)
+++||++||+|++|++||+.+|+++.++|+...
T Consensus 249 al~D~~~sl~p~el~~lv~~i~~i~~~lg~~~~ 281 (285)
T 3sz8_A 249 ARCDGPSALPLHQLEGLLSQMKAIDDLVKRMPA 281 (285)
T ss_dssp CSCSSCCCEEGGGHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCchhhccCHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999999999999999999999998644
|
| >3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-78 Score=561.86 Aligned_cols=271 Identities=49% Similarity=0.812 Sum_probs=239.8
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
.+|.++|+++|||||||||+++.+++|++|+++++++|+.+|++.+|+|+||||+|+|+|+|+++||++|+++|+++||+
T Consensus 11 ~iG~~~~~~vIaGPCsie~~~~~~e~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~Glp 90 (288)
T 3tml_A 11 EVGLDQPFFLIAGTCVVESEQMTIDTAGRLKEICEKLNVPFIYKSSYDKANRSSGKSFRGLGMDEGLRILSEVKRQLGLP 90 (288)
T ss_dssp EESTTSCCEEEEECSBCCCHHHHHHHHHHHHHHHHHHTCCEEEECBC--------------CHHHHHHHHHHHHHHHCCC
T ss_pred EECCCCceEEEEeCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCe
Confidence 35677899999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred EEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC------CcEEE
Q 022892 90 IVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN------PNVMV 163 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn------~~i~L 163 (290)
|+||+||+.+++++.+++|++||||++|+|++||+++|+++|||+|||||++|++||++|+++|.+.|| ++|+|
T Consensus 91 ~~tev~d~~~v~~l~~~vd~lkIgA~~~~n~~LLr~~a~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L 170 (288)
T 3tml_A 91 VLTDVHSIDEIEQVASVVDVLQTPAFLCRQTDFIHACARSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMA 170 (288)
T ss_dssp EEEECCSGGGHHHHHHHCSEEEECGGGTTCHHHHHHHHTSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEE
T ss_pred EEEEeCCHHHHHHHHHhCCEEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEE
Confidence 999999999999999999999999999999999999999999999999998899999999999999999 89999
Q ss_pred EeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 164 CERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 164 ~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
||||++|+|++..+||++|+.||+||+||++|+||++|+||+ .+++|+|+|++++.+++||+|+||+|+|||+||
T Consensus 171 ~erg~~y~~~~~~vdl~~i~~lk~~~~pV~~D~sHs~q~p~~-----~~~~s~G~r~~v~~~a~AAvA~GadGl~iE~H~ 245 (288)
T 3tml_A 171 CERGVSFGYNNLVSDMRSLAIMRETNAPVVFDATHSVQLPGG-----QGTSSGGQREFVPVLARAAVATGVAGLFMETHP 245 (288)
T ss_dssp EECCEECSSSCEECCHHHHHHGGGGSSCEEEEHHHHTCCCC-------------CTTHHHHHHHHHHHHCCSEEEEEEES
T ss_pred EeCCCCCCCCcCcCCHHHHHHHHhcCCcEEEcCCcccccCCc-----ccCCCCCchhhHHHHHHHHHHcCCCEEEEeecc
Confidence 999999988777789999999998999999999999999984 467888999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCccccccCC
Q 022892 244 DPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDL 285 (290)
Q Consensus 244 t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~~~~~~~~ 285 (290)
||||+++||++||+|++|++||+.+|+++.++|+...+++++
T Consensus 246 ~pd~al~D~~~sl~p~el~~lv~~ir~i~~alg~~~~~~~~~ 287 (288)
T 3tml_A 246 NPAEAKSDGPNAVPLNRMGALLETLVTLDQAVKRNPFLENDF 287 (288)
T ss_dssp SGGGCSSCGGGCEEGGGHHHHHHHHHHHHHHHHSSCCGGGGC
T ss_pred ChhhcCCchhhcCCHHHHHHHHHHHHHHHHHhCCCCcccccc
Confidence 999999999999999999999999999999999876666654
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-77 Score=555.85 Aligned_cols=261 Identities=49% Similarity=0.838 Sum_probs=237.6
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcE
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPI 90 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~ 90 (290)
+|.++++++|||||||||.++.+++|++|++++++.|+..|++.+|+|+||||+|+|+|+|+++||++|+++|+++||+|
T Consensus 36 ~G~~~~l~vIaGPCsies~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLpv 115 (298)
T 3fs2_A 36 FSNSAPLALIAGPCQMETRDHAFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLKAARGIGLEKALEVFSDLKKEYGFPV 115 (298)
T ss_dssp ECTTSCCEEEEECSBCCCHHHHHHHHHHHHHHHHHHTCCEEEECBCCCCC---------CCHHHHHHHHHHHHHHHCCCE
T ss_pred ECCCCceEEEEeCCcCCCHHHHHHHHHHHHHHHHHcCCcEEEEcccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeE
Confidence 56677899999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred EEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC
Q 022892 91 VTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF 170 (290)
Q Consensus 91 ~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~ 170 (290)
+||+||+.+++++++++|++||||++++|++||+++|++++||+|||||++|++||++|+++|.+.||++|+|||||++|
T Consensus 116 ~Tev~D~~~v~~l~~~vd~lkIgA~~~~n~~LLr~va~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~~y 195 (298)
T 3fs2_A 116 LTDIHTEEQCAAVAPVVDVLQIPAFLCRQTDLLIAAARTGRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERGVSF 195 (298)
T ss_dssp EEECCSHHHHHHHTTTCSEEEECGGGTTCHHHHHHHHHTTSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECCEEC
T ss_pred EEEeCCHHHHHHHHhhCCEEEECccccCCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred CCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCC
Q 022892 171 GYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPV 250 (290)
Q Consensus 171 ~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~ 250 (290)
+|+++.+||++|+.||+|++||++|+||++|+||+ .+++|+|+|++++.+++||+|+||+|+|||+||||||+++
T Consensus 196 ~~~~~~vdl~~i~~lk~~~~PV~~D~sHsvq~p~~-----~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H~tpd~al~ 270 (298)
T 3fs2_A 196 GYNTLVSDMRALPIMAGLGAPVIFDATHSVQQPGG-----QGGSTGGQREFVETLARAAVAVGVAGFFIETHEDPDNAPS 270 (298)
T ss_dssp SSSCEECCTTHHHHHHTTTSCEEEEHHHHTCCCC-------------CGGGHHHHHHHHHHHCCSEEEEEEESSGGGCSS
T ss_pred CCCCCccCHHHHHHHHHcCCcEEEcCCCccccCCc-----ccCCCCCchhhHHHHHHHHHHcCCCEEEEEecCChhccCC
Confidence 88887899999999999999999999999999984 3778889999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 251 DGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 251 D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
||++||+|++|++||+.+|+++.+++
T Consensus 271 D~~~sl~p~el~~lv~~ir~i~~a~~ 296 (298)
T 3fs2_A 271 DGPNMVPIDKMPALLEKLMAFDRIAK 296 (298)
T ss_dssp SGGGCEEGGGHHHHHHHHHHHHHHHT
T ss_pred chhhcCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999885
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-74 Score=534.59 Aligned_cols=270 Identities=47% Similarity=0.765 Sum_probs=234.7
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
.+|.++|++||||||++||.+.++++|+++++++++++++.+++.+|+|+|||++|+|+|+++++||++|+++|+++||+
T Consensus 9 ~iG~~~~~~vIAGpc~~~~~e~a~~~a~~lk~~ga~~~~~~v~k~~f~k~prts~~~~~g~~l~~gl~~l~~~~~~~Gl~ 88 (280)
T 2qkf_A 9 TLGNNSPFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEFGIP 88 (280)
T ss_dssp EESTTSCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTCCEEEEEESCCSSCSSSSSCCCSCHHHHHHHHHHHHHHHCCC
T ss_pred EECCCCceEEEEecCCCCCHHHHHHHHHHHHHhhhhcceeEEEeeeeecCCCCChHHhhccchHHHHHHHHHHHHHcCCc
Confidence 46788899999999999999999999999999999999999999999998999999999999899999999999999999
Q ss_pred EEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 90 IVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
|+||+||+.+++++++++|++||||++++|++||+++|+++|||+|||||++|++||++|++++++.||++++|||||++
T Consensus 89 ~~te~~d~~~~~~l~~~~d~~kIga~~~~n~~ll~~~a~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~ 168 (280)
T 2qkf_A 89 VITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSS 168 (280)
T ss_dssp EEEECCSGGGHHHHHHHCSEEEECGGGTTBHHHHHHHHHTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEE
T ss_pred EEEecCCHHHHHHHHhhCCEEEECcccccCHHHHHHHHcCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 FGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
|+|+++++||++|+.||+ | ++||++||||+||+||+ +++.+.|+|+++..++++|+++||+|+|||+||||||
T Consensus 169 ~~~~~~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~~~~-----~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H~~~d~ 243 (280)
T 2qkf_A 169 FGYDNLVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDA-----GSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKL 243 (280)
T ss_dssp CSTTCEECCTTHHHHHHHHTTTCCEEEEHHHHCC---------------CHHHHHHHHHHHHHTTCCSEEEEEC------
T ss_pred CCCCccccCHHHHHHHHHhCCCCCEEEECCCCccccCc-----cccccCCchhhHHHHHHHHHHcCCCEEEEeecCCccc
Confidence 999888899999999999 7 99999999999999994 4677788999999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCCccccccC
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNID 284 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~~~~~~~ 284 (290)
+++||++||+|++|++||+.+|+++.++|++.++++|
T Consensus 244 al~D~~~sl~p~~l~~lv~~i~~~~~~~g~~~~~~~e 280 (280)
T 2qkf_A 244 AKCDGPSALPLHLLEDFLIRIKALDDLIKSQPILTIE 280 (280)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHSCCC---
T ss_pred CCCccccCCCHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 9999999999999999999999999999999999887
|
| >2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-73 Score=521.36 Aligned_cols=261 Identities=51% Similarity=0.794 Sum_probs=246.3
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHc-CCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKV-GLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~-G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
+|++||||||||||.++.++||++|+++++++ +...||+.+|+|+||||+++|+|+++++||++|+++|+++||+++||
T Consensus 2 ~~l~viaGPCsie~~~~~~~~A~~l~~~~~~~~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~l~~~~~e~Glp~~te 81 (267)
T 2nwr_A 2 EKFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTD 81 (267)
T ss_dssp CCEEEEEECSBCSCHHHHHHHHHHHHHHHHHCTTEEEEEECBSCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEEEE
T ss_pred CCcEEEEcCCCcCCHHHHHHHHHHHHHHHHhhcCccEEEeeccccCCCCCCCCCcCccHHHHHHHHHHHHHhcCCeEEEe
Confidence 57899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred ecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Q 022892 94 VHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN 173 (290)
Q Consensus 94 ~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~ 173 (290)
+||+.+++++++++|++||||++++|++||+++|++++||+|||||++|++||++|++++.+.||++++|||||++|+|+
T Consensus 82 ~~d~~~~~~l~~~vd~~~IgA~~~rn~~ll~~~a~~~~PV~lK~G~~~t~~e~~~Av~~i~~~GN~~i~L~~rG~~~~y~ 161 (267)
T 2nwr_A 82 IHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYN 161 (267)
T ss_dssp CSSGGGHHHHHTTCSEEEECGGGTTCHHHHHHHHTTTSEEEEECCTTCCGGGGHHHHHHHHHTTCSSEEEEECCEECSSS
T ss_pred cCCHHhHHHHHhcCCEEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999998998
Q ss_pred CCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCC
Q 022892 174 DLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253 (290)
Q Consensus 174 ~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~ 253 (290)
++++||++++.||+.+ ||++|+||+||+||+ .|+.+.|+|+++..++++|+++||+|+|||+||||||+++||+
T Consensus 162 ~~~~dl~~i~~lk~~~-pVivD~sH~~q~p~G-----~s~hs~g~~~~~~~ia~aava~Ga~G~mIE~H~~pd~al~Dg~ 235 (267)
T 2nwr_A 162 NLVVDFRSLPIMKQWA-KVIYDATHSVQLPGG-----LGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAS 235 (267)
T ss_dssp CEECCTTHHHHHTTTS-EEEEETTGGGCCTTC-----------CCGGGHHHHHHHHHHHCCSEEEEEEESCGGGCSSCTT
T ss_pred ccccCHHHHHHHHHcC-CEEEcCCcccccCCC-----cCcCCCCchhHHHHHHHHHHHcCCCEEEEEecCCcccCCCccc
Confidence 8889999999999877 999999999999984 4777789999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCC-cccc
Q 022892 254 TQWPLRNLEELLEELVAIAKVSKG-KQRM 281 (290)
Q Consensus 254 ~sl~p~~l~~lv~~ir~~~~~lg~-~~~~ 281 (290)
+|++|++|++||+.+|+++.++|+ .+++
T Consensus 236 qsl~p~~l~~l~~~i~~~~~~~g~~~~~~ 264 (267)
T 2nwr_A 236 TQLPLSQLEGIIEAILEIREVASKYYETI 264 (267)
T ss_dssp TCEEGGGHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCccccC
Confidence 999999999999999999999998 4443
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-72 Score=524.28 Aligned_cols=263 Identities=47% Similarity=0.779 Sum_probs=244.6
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
.+|.++|++||||||++||.+.++++|++|++++++++...+++.+|+|+|||++|+|+|+++++||++|+++|+++||+
T Consensus 12 ~iG~~~~~~vIAGpc~~~~~e~a~~~a~~lk~~ga~~~~~~v~k~~f~k~prts~~sf~g~~l~~gl~~l~~~~~~~Glp 91 (292)
T 1o60_A 12 DVANDKPFVLFGGMNVLESRDMAMQVCEAYVKVTEKLGVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKDTFGVK 91 (292)
T ss_dssp EECTTSCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCE
T ss_pred EECCCCceEEEEecCCccCHHHHHHHHHHHHHHhhhhCEeEEEhhhcccCCCCChHHhhhhhHHHHHHHHHHHHHHcCCc
Confidence 36778899999999999999999999999999999999999999999998999999999999899999999999999999
Q ss_pred EEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 90 IVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
|+|||||+.+++++++++||+||||++++|++||+++|+++|||+|||||++|++||++|++++++.||++++|||||++
T Consensus 92 ~~te~~d~~~~~~l~~~vd~~kIgA~~~~n~~Ll~~~a~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~ 171 (292)
T 1o60_A 92 IITDVHEIYQCQPVADVVDIIQLPAFLARQTDLVEAMAKTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTN 171 (292)
T ss_dssp EEEECCSGGGHHHHHTTCSEEEECGGGTTCHHHHHHHHHTTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEE
T ss_pred EEEecCCHHHHHHHHhcCCEEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 FGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
|+|+++++||++|+.||+ | ++||++||||+||+||+ +++.+.|+|+++..++++|+++||+|+|||+||||||
T Consensus 172 ~~y~~~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~p~~-----~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H~~~d~ 246 (292)
T 1o60_A 172 FGYDNLIVDMLGFSVMKKASKGSPVIFDVTHSLQCRDP-----FGAASSGRRAQVTELARSGLAVGIAGLFLEAHPNPNQ 246 (292)
T ss_dssp CSTTCEECCTTHHHHHHHHTTSCCEEEEHHHHCC-----------------CTTHHHHHHHHHHHCCSEEEEEEESSGGG
T ss_pred CCCCccccCHHHHHHHHhhCCCCCEEEECCCcccccCc-----cccCCCCChhHHHHHHHHHHHcCCCEEEEEecCCccc
Confidence 899888899999999999 7 99999999999999984 4777789999999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
+++||++||+|++|++||+.+|+++.++|+
T Consensus 247 al~Dg~~sl~p~~l~~lv~~ir~i~~a~g~ 276 (292)
T 1o60_A 247 AKCDGPSALPLSALEGFVSQMKAIDDLVKS 276 (292)
T ss_dssp CSSCCTTCEEGGGHHHHHHHHHHHHHHHHH
T ss_pred CCchhhcCCCHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999987
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-65 Score=474.98 Aligned_cols=239 Identities=31% Similarity=0.472 Sum_probs=226.4
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcE
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPI 90 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~ 90 (290)
+|.+ +++||||||++||.+..+++|+++++ +|++++++|.|+ |||++++|+|+| ++||++|+++|+++||+|
T Consensus 34 iG~~-~~~vIAgpc~~~~~e~a~~~a~~~k~----~ga~~~k~~~~k--prts~~~f~g~g-~~gl~~l~~~~~~~Gl~~ 105 (276)
T 1vs1_A 34 IGGG-SKAVIAGPCSVESWEQVREAALAVKE----AGAHMLRGGAFK--PRTSPYSFQGLG-LEGLKLLRRAGDEAGLPV 105 (276)
T ss_dssp EBTT-BCEEEEECSBCCCHHHHHHHHHHHHH----HTCSEEECBSSC--CCSSTTSCCCCT-HHHHHHHHHHHHHHTCCE
T ss_pred ECCC-CeEEEEecCCCCCHHHHHHHHHHHHH----hCCCEEEeEEEe--CCCChhhhcCCC-HHHHHHHHHHHHHcCCcE
Confidence 5555 79999999999998888888888887 599999999998 999999999998 899999999999999999
Q ss_pred EEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-C
Q 022892 91 VTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT-M 169 (290)
Q Consensus 91 ~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~ 169 (290)
+|||||+.+++++++++|++||||++++|++||+++|+++|||+|||||++|++||+.|++++++.||++++|||||+ +
T Consensus 106 ~te~~d~~~~~~l~~~vd~~kIgs~~~~n~~ll~~~a~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~ 185 (276)
T 1vs1_A 106 VTEVLDPRHVETVSRYADMLQIGARNMQNFPLLREVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRT 185 (276)
T ss_dssp EEECCCGGGHHHHHHHCSEEEECGGGTTCHHHHHHHHHHTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCC
T ss_pred EEecCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999655 6
Q ss_pred C-CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 F-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~-~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
| +|+.+++||++++.||+ ||+||++||||++ |.++++..++++|+++||+|+|||+||||||
T Consensus 186 yp~y~~~~vdl~~i~~lk~~~~lpVi~dssH~~----------------g~~~~~~~~~~aAva~Ga~Gl~IE~H~~~d~ 249 (276)
T 1vs1_A 186 FEPSTRFTLDVAAVAVLKEATHLPVIVDPSHPA----------------GRRSLVPALAKAGLAAGADGLIVEVHPNPEE 249 (276)
T ss_dssp SCCSSSSBCBHHHHHHHHHHBSSCEEECCHHHH----------------CSGGGHHHHHHHHHHTTCSEEEEEBCSSGGG
T ss_pred CCCcCcchhCHHHHHHHHHHhCCCEEEeCCCCC----------------CccchHHHHHHHHHHcCCCEEEEEecCCccc
Confidence 7 58999999999999999 8999999999996 7899999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHH
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAK 273 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~ 273 (290)
+++||++||+|++|++||+.+|+++.
T Consensus 250 a~~D~~~sl~p~~~~~lv~~i~~~~~ 275 (276)
T 1vs1_A 250 ALSDAKQQLTPGEFARLMGELRWHRL 275 (276)
T ss_dssp CSSCGGGCBCHHHHHHHHHHHHHTTC
T ss_pred CCCchhcCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998764
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-65 Score=485.35 Aligned_cols=243 Identities=30% Similarity=0.466 Sum_probs=231.5
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcE
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPI 90 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~ 90 (290)
+|.+ +++||||||++||.+..+++|+++++ +|+++++++.|+ |||++|+|+|++ ++||++|+++|+++||+|
T Consensus 102 iG~~-~~~vIAgpcs~es~e~a~~~a~~~k~----aGa~~vr~q~fK--prTs~~~f~glg-~egl~~l~~~~~e~Gl~~ 173 (350)
T 1vr6_A 102 IGNG-YFTIIAGPCSVEGREMLMETAHFLSE----LGVKVLRGGAYK--PRTSPYSFQGLG-EKGLEYLREAADKYGMYV 173 (350)
T ss_dssp ESTT-EEEEEEECSBCCCHHHHHHHHHHHHH----TTCCEEECBSCC--CCCSTTSCCCCT-HHHHHHHHHHHHHHTCEE
T ss_pred ECCC-CeEEEEeCCCcCCHHHHHHHHHHHHH----cCCCeeeeeEEe--CCCChHhhcCCC-HHHHHHHHHHHHHcCCcE
Confidence 4555 79999999999998888888888887 699999999998 999999999998 899999999999999999
Q ss_pred EEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-C
Q 022892 91 VTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT-M 169 (290)
Q Consensus 91 ~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~ 169 (290)
+|||||+.+++++++++|++|||||+++|++||+++|+++|||+|||||++|++||+.|++++++.||++++|||||+ +
T Consensus 174 ~te~~d~~~~~~l~~~vd~lkIgAr~~~n~~LL~~va~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~t 253 (350)
T 1vr6_A 174 VTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRT 253 (350)
T ss_dssp EEECSSGGGHHHHHHHCSEEEECGGGTTCHHHHHHHHTTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCC
T ss_pred EEEeCCHHHHHHHHHhCCEEEECcccccCHHHHHHHHccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998887 4
Q ss_pred C-CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 F-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~-~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
| +|+++++||++|+.||+ |++||++||||++ |+++++..++++|+++||+|+|||+||||||
T Consensus 254 yp~~~~~~vdl~ai~~lk~~~~lpVi~dssHs~----------------G~~~~v~~~a~AAvA~GA~Gl~IE~H~~pd~ 317 (350)
T 1vr6_A 254 FEKATRNTLDISAVPIIRKESHLPILVDPSHSG----------------GRRDLVIPLSRAAIAVGAHGIIVEVHPEPEK 317 (350)
T ss_dssp SCCSSSSBCCTTHHHHHHHHBSSCEEECHHHHH----------------CSGGGHHHHHHHHHHHTCSEEEEEBCSCGGG
T ss_pred CCCcChhhhhHHHHHHHHHhhCCCEEEeCCCCC----------------cccchHHHHHHHHHHhCCCEEEEEecCCccc
Confidence 6 57788999999999999 8999999999996 7899999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
+++||++||+|++|++||+.+|+++.++|+
T Consensus 318 al~D~~~sL~p~e~~~lv~~ir~i~~alg~ 347 (350)
T 1vr6_A 318 ALSDGKQSLDFELFKELVQEMKKLADALGV 347 (350)
T ss_dssp CSSCGGGCBCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCchhhcCCHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999986
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-64 Score=465.49 Aligned_cols=238 Identities=33% Similarity=0.514 Sum_probs=224.5
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcE
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPI 90 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~ 90 (290)
+|.+ ++||||||++||.+.++++|+++++ +|+++||+|+|+ |||++|+|+|++ ++||++|+++|+++||+|
T Consensus 20 iG~~--~~vIAgpc~~~~~e~a~~~a~~l~~----~Ga~~vk~~~fk--prts~~~~~g~~-~egl~~l~~~~~~~Gl~~ 90 (262)
T 1zco_A 20 FGEG--FTIIAGPCSIESREQIMKVAEFLAE----VGIKVLRGGAFK--PRTSPYSFQGYG-EKALRWMREAADEYGLVT 90 (262)
T ss_dssp ETSS--CEEEEECSBCCCHHHHHHHHHHHHH----TTCCEEECBSSC--CCSSTTSCCCCT-HHHHHHHHHHHHHHTCEE
T ss_pred ECCC--cEEEEeCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecc--cCCCcccccCcc-HHHHHHHHHHHHHcCCcE
Confidence 4445 8999999999988888888887777 699999999995 899999999987 899999999999999999
Q ss_pred EEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-C
Q 022892 91 VTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT-M 169 (290)
Q Consensus 91 ~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~ 169 (290)
+|||||+.+++++.+++|++||||++++|++||+++|++++||+|||||++|++||++|++++.+.||++++|||||. .
T Consensus 91 ~te~~d~~~~~~l~~~vd~~kIga~~~~n~~ll~~~a~~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~ 170 (262)
T 1zco_A 91 VTEVMDTRHVELVAKYSDILQIGARNSQNFELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRT 170 (262)
T ss_dssp EEECCCGGGHHHHHHHCSEEEECGGGTTCHHHHHHHTTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCC
T ss_pred EEeeCCHHhHHHHHhhCCEEEECcccccCHHHHHHHHhcCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994 3
Q ss_pred C-CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 F-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~-~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
| +|+++++||++++.||+ |++||++||||++ |.+++++.++++|+++||+|+|||+||||||
T Consensus 171 ~~~y~~~~v~L~ai~~lk~~~~~pVi~d~sH~~----------------g~~~~v~~~~~aAva~Ga~Gl~iE~H~~~d~ 234 (262)
T 1zco_A 171 FETATRFTLDISAVPVVKELSHLPIIVDPSHPA----------------GRRSLVIPLAKAAYAIGADGIMVEVHPEPEK 234 (262)
T ss_dssp SCCSSSSBCCTTHHHHHHHHBSSCEEECSSTTT----------------CSGGGHHHHHHHHHHTTCSEEEEEBCSSGGG
T ss_pred CCCcChhhcCHHHHHHHHhhhCCCEEEEcCCCC----------------CccchHHHHHHHHHHcCCCEEEEEecCCccc
Confidence 4 79889999999999999 8999999999996 7788999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHH
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAK 273 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~ 273 (290)
+++||++|++|++|++||+.+|+++.
T Consensus 235 al~D~~~sl~p~~~~~l~~~i~~~~~ 260 (262)
T 1zco_A 235 ALSDSQQQLTFDDFLQLLKELEALGW 260 (262)
T ss_dssp CSSCTTTCBCHHHHHHHHHHHHHTTC
T ss_pred cCChhhcCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998864
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-65 Score=484.75 Aligned_cols=245 Identities=14% Similarity=0.098 Sum_probs=229.8
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC--Cccc--CC---------------CC
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT--SSKS--FR---------------GP 70 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt--s~~~--~~---------------g~ 70 (290)
.||.+++++||||||+ ||+++++.|++|++.|+++|+++||+|.|+ ||| ++++ |+ ++
T Consensus 13 ~iG~~~~~~iIAe~g~--NH~gs~e~a~~li~~ak~aGadavKfq~~k--~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l 88 (349)
T 2wqp_A 13 SVGYNHEPLIICEIGI--NHEGSLKTAFEMVDAAYNAGAEVVKHQTHI--VEDEMSDEAKQVIPGNADVSIYEIMERCAL 88 (349)
T ss_dssp EEETTSCCEEEEEEET--TTTTCHHHHHHHHHHHHHHTCSEEEEEECC--HHHHCCGGGGGCCCTTCSSCHHHHHHHHCC
T ss_pred EECCCCceEEEEecCC--cccCCHHHHHHHHHHHHHhCCCEEeeeecc--cccccCcchhccccCCCCccHHHHHHHhCC
Confidence 4777888999999999 999999999999999999999999999999 788 8887 87 34
Q ss_pred ChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh-cceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 022892 71 GMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 71 ~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~-~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~A 149 (290)
+ ++++++|+++|++.||+|+|||||+++++++.++ +|++||||++|+|++||+++|+++|||+|||||+ |++||+.|
T Consensus 89 ~-~e~~~~L~~~~~~~Gi~~~st~~d~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPviLstGma-t~~Ei~~A 166 (349)
T 2wqp_A 89 N-EEDEIKLKEYVESKGMIFISTLFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGMN-SIESIKKS 166 (349)
T ss_dssp C-HHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTC-CHHHHHHH
T ss_pred C-HHHHHHHHHHHHHhCCeEEEeeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCCC-CHHHHHHH
Confidence 5 7999999999999999999999999999999996 9999999999999999999999999999999999 99999999
Q ss_pred HHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHH
Q 022892 150 AEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIAR 227 (290)
Q Consensus 150 ve~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~ 227 (290)
+++|++.|| +++||||.+.||.+.+++||++|+.||+ | |+|||+ |||+. | ..+++
T Consensus 167 ve~i~~~G~-~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~-sdHt~----------------G-----~~~~~ 223 (349)
T 2wqp_A 167 VEIIREAGV-PYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGL-SDHTL----------------D-----NYACL 223 (349)
T ss_dssp HHHHHHHTC-CEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEE-ECCSS----------------S-----SHHHH
T ss_pred HHHHHHcCC-CEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEe-CCCCC----------------c-----HHHHH
Confidence 999999999 9999999999887778999999999999 9 999986 99996 6 68999
Q ss_pred HHHHcCCCEEEEeeeCCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCC--ccccccCC
Q 022892 228 TAIAVGVDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKG--KQRMNIDL 285 (290)
Q Consensus 228 aAva~GA~G~~IEkH~t~dka~--~D~~~sl~p~~l~~lv~~ir~~~~~lg~--~~~~~~~~ 285 (290)
+|||+||+ ||||||||||++ +||++||+|+||++||+.+|+++.++|+ |.+.+.|.
T Consensus 224 AAvAlGA~--iIEkH~tld~a~~G~D~~~SL~p~ef~~lv~~ir~~~~alG~~~k~~~~~E~ 283 (349)
T 2wqp_A 224 GAVALGGS--ILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARGGKKDTIIAGEK 283 (349)
T ss_dssp HHHHHTCC--EEEEEBCSCTTCCSTTGGGCBCHHHHHHHHHHHHHHHHHSSCCTTCCCGGGH
T ss_pred HHHHhCCC--EEEeCCCccccCCCCChhhhCCHHHHHHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 99999998 999999999999 7999999999999999999999999998 55555554
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-64 Score=484.32 Aligned_cols=248 Identities=12% Similarity=0.118 Sum_probs=230.2
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC--Cccc--CC----------------C
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT--SSKS--FR----------------G 69 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt--s~~~--~~----------------g 69 (290)
.||.++++|||||+|. ||+|+++.|++|++.|+++|+++||+|.|+ ||| ++++ |+ +
T Consensus 22 ~ig~~~~~~IIAEiG~--NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k--~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~ 97 (385)
T 1vli_A 22 TVGKDAPVFIIAEAGI--NHDGKLDQAFALIDAAAEAGADAVKFQMFQ--ADRMYQKDPGLYKTAAGKDVSIFSLVQSME 97 (385)
T ss_dssp EEETTSCCEEEEEEET--TTTTCHHHHHHHHHHHHHHTCSEEEECCBC--GGGGTSCCC---------CCCHHHHGGGBS
T ss_pred EeCCCCCcEEEEeecC--cccccHHHHHHHHHHHHHhCCCEEeeeeec--cCcccCcchhhhccCCCCCccHHHHHHhcC
Confidence 4677889999999999 999999999999999999999999999999 677 8887 76 3
Q ss_pred CChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh-cceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 022892 70 PGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVN 148 (290)
Q Consensus 70 ~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~-~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~ 148 (290)
++ ++++++|+++|++.||+|+|||||+++++++.++ +|+|||||++++|++||+++|+++|||+|||||+ |++||+.
T Consensus 98 l~-~e~~~~L~~~~~~~Gi~~~stpfD~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va~~gKPViLStGma-Tl~Ei~~ 175 (385)
T 1vli_A 98 MP-AEWILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIFSTAGA-EISDVHE 175 (385)
T ss_dssp SC-GGGHHHHHHHHHHTTCEEECBCCSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTC-CHHHHHH
T ss_pred CC-HHHHHHHHHHHHHcCCcEEEccCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCCC-CHHHHHH
Confidence 44 7999999999999999999999999999999996 9999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHH
Q 022892 149 SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIA 226 (290)
Q Consensus 149 Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a 226 (290)
|+++|++.||++|+||||.+.||.+.+++||++|+.||+ | ++|||+ |||+. |+ ..++
T Consensus 176 Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpVG~-SdHt~----------------G~----~~~~ 234 (385)
T 1vli_A 176 AWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGF-SDHSE----------------HP----TEAP 234 (385)
T ss_dssp HHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEEE-EECCS----------------SS----SHHH
T ss_pred HHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCEEe-CCCCC----------------Cc----hHHH
Confidence 999999999999999999999887788999999999999 9 999976 99996 53 5689
Q ss_pred HHHHHcCCCEEEEeeeCCCCCCC--CCCCCCCChHHHHHHHHHHHHHH-------------HHhCC--ccccccCCC
Q 022892 227 RTAIAVGVDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIA-------------KVSKG--KQRMNIDLT 286 (290)
Q Consensus 227 ~aAva~GA~G~~IEkH~t~dka~--~D~~~sl~p~~l~~lv~~ir~~~-------------~~lg~--~~~~~~~~~ 286 (290)
++|||+||+ ||||||||||++ +||++||+|+||++||+.+|+++ .++|+ |++.+.|..
T Consensus 235 ~AAvAlGA~--iIEkHftldra~~G~D~~~SL~P~ef~~lv~~ir~i~~~~~~~~~~~~~~~alG~~~k~~~~~E~~ 309 (385)
T 1vli_A 235 CAAVRLGAK--LIEKHFTIDKNLPGADHSFALNPDELKEMVDGIRKTEAELKQGITKPVSEKLLGSSYKTTTAIEGE 309 (385)
T ss_dssp HHHHHTTCS--EEEEEBCSCTTSSCSSCTTSBCHHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHCCSSCCCCTTTCS
T ss_pred HHHHHcCCC--EEEeCCCccccCCCCchhhhCCHHHHHHHHHHHHHHHhhcccccccchHHHHhCcccCccCHHHHH
Confidence 999999998 999999999999 79999999999999999999999 99998 666677664
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-63 Score=479.03 Aligned_cols=243 Identities=31% Similarity=0.479 Sum_probs=224.8
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcE
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPI 90 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~ 90 (290)
||.+ ++.+|+|||++||.+.++++|+++++ +|+++|+++.|+ |||++|+|+|++ .+|+++|+++|+++||+|
T Consensus 138 iG~~-~~~~Iigpcsves~e~a~~~a~~~k~----aGa~~vk~q~fk--prts~~~f~gl~-~egl~~L~~~~~~~Gl~~ 209 (385)
T 3nvt_A 138 IGNG-EPVFVFGPCSVESYEQVAAVAESIKA----KGLKLIRGGAFK--PRTSPYDFQGLG-LEGLKILKRVSDEYGLGV 209 (385)
T ss_dssp ETSS-SCEEEEECSBCCCHHHHHHHHHHHHH----TTCCEEECBSSC--CCSSTTSCCCCT-HHHHHHHHHHHHHHTCEE
T ss_pred ECCC-CeEEEEEeCCcCCHHHHHHHHHHHHH----cCCCeEEccccc--CCCChHhhcCCC-HHHHHHHHHHHHHcCCEE
Confidence 4554 46899999999987777777777766 799999999996 999999999999 699999999999999999
Q ss_pred EEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-
Q 022892 91 VTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM- 169 (290)
Q Consensus 91 ~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~- 169 (290)
+|||||+.+++++.+++|++||||++++|++||+++|++++||+|||||++|++||++|+++|.+.||++++|||||++
T Consensus 210 ~te~~d~~~~~~l~~~vd~lkIgs~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~ 289 (385)
T 3nvt_A 210 ISEIVTPADIEVALDYVDVIQIGARNMQNFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRT 289 (385)
T ss_dssp EEECCSGGGHHHHTTTCSEEEECGGGTTCHHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCC
T ss_pred EEecCCHHHHHHHHhhCCEEEECcccccCHHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999779999999999999999999999999764
Q ss_pred CC-CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 FG-YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~~-y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
|| |+.+++||++|+.||+ ||+||++|+||+. |+|++++.++++|+|+||+|+|||+||||||
T Consensus 290 yp~~~~~~ldl~~i~~lk~~~~lpV~~D~th~~----------------G~r~~v~~~a~AAvA~GA~gl~iE~H~~pd~ 353 (385)
T 3nvt_A 290 YEKATRNTLDISAVPILKKETHLPVMVDVTHST----------------GRKDLLLPCAKAALAIEADGVMAEVHPDPAV 353 (385)
T ss_dssp SCCSSSSBCCTTHHHHHHHHBSSCEEEEHHHHH----------------CCGGGHHHHHHHHHHTTCSEEEEEBCSCGGG
T ss_pred CCCCCccccCHHHHHHHHHhcCCCEEEcCCCCC----------------CccchHHHHHHHHHHhCCCEEEEEecCChhh
Confidence 65 4668899999999999 9999988999985 8899999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
+++||++||+|++|++||+.+|+++.++++
T Consensus 354 a~~D~~~sl~p~el~~lv~~i~~i~~~~~~ 383 (385)
T 3nvt_A 354 ALSDSAQQMDIPEFEEFWNAILASNLVPHK 383 (385)
T ss_dssp CSSCTTTSBCHHHHHHHHHHHHHHTCCC--
T ss_pred cCCcccccCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999987654
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-60 Score=447.74 Aligned_cols=237 Identities=10% Similarity=-0.043 Sum_probs=213.6
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCC-----EEeccccccCCCCCc-------cc----CC--CCChhHHH
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLP-----LVFKSSFDKANRTSS-------KS----FR--GPGMVEGL 76 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~-----~V~~~~~~k~~rts~-------~~----~~--g~~~~~~l 76 (290)
.++|||||+++ ||||++++|++|++.|+++|+| +||||+|+.+..+++ +. |+ .++ ++++
T Consensus 4 ~~~~IIAEig~--NHnGdle~Ak~lI~~A~~aGad~~~d~avKfQt~~~d~l~~~~~~~~~~~~~~~~~~~~el~-~e~~ 80 (350)
T 3g8r_A 4 SKPLFIFEMAN--NHMGNVEHGVALIRAIRESCQGFDFDFGFKLQYRNLDTFIHSSFKGRDDVKYVKRFEETRLQ-PEQM 80 (350)
T ss_dssp -CCEEEEECTT--TTTTCSHHHHHHHHHHHHHTTTCCSEEEEEEEECCHHHHBCGGGTTCCSSSSHHHHHHTCCC-HHHH
T ss_pred CCCEEEEEECC--CccCcHHHHHHHHHHHHHhCCcccCCeeEEccccchhhhcChhccCccHHHHHHHHHHhcCC-HHHH
Confidence 47899999999 9999999999999999999998 999999985432222 11 11 134 6899
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhhh-cceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~-~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
++|+++|++.||+|+|||||+++++++.++ +|++||||++++|++||+++|+++|||+|||||+ |++||+.|+++|.+
T Consensus 81 ~~L~~~~~~~Gi~~~st~fD~~svd~l~~~~v~~~KI~S~~~~N~pLL~~va~~gKPviLstGms-tl~Ei~~Ave~i~~ 159 (350)
T 3g8r_A 81 QKLVAEMKANGFKAICTPFDEESVDLIEAHGIEIIKIASCSFTDWPLLERIARSDKPVVASTAGA-RREDIDKVVSFMLH 159 (350)
T ss_dssp HHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCCEEEECSSSTTCHHHHHHHHTSCSCEEEECTTC-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcEEeccCCHHHHHHHHHcCCCEEEECcccccCHHHHHHHHhhCCcEEEECCCC-CHHHHHHHHHHHHH
Confidence 999999999999999999999999999996 9999999999999999999999999999999999 99999999999999
Q ss_pred cCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 022892 156 AGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 233 (290)
Q Consensus 156 ~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G 233 (290)
.|| +++||||.+.||.+.+++||++|+.||+ | ++|||+ |||+. |.+ ..++++|||+|
T Consensus 160 ~g~-~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lpVG~-SdHt~----------------g~~---~~~~~AAvAlG 218 (350)
T 3g8r_A 160 RGK-DLTIMHCVAEYPTPDDHLHLARIKTLRQQYAGVRIGY-STHED----------------PDL---MEPIMLAVAQG 218 (350)
T ss_dssp TTC-CEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEEEE-EECCC----------------SSC---CHHHHHHHHTT
T ss_pred cCC-CEEEEecCCCCCCCcccCCHHHHHHHHHHCCCCCEEc-CCCCC----------------CCc---cHHHHHHHHcC
Confidence 988 7999999999888888999999999999 9 899987 99995 211 24678999999
Q ss_pred CCEEEEeeeCCCCC-CCCCCCCCCChHHHHHHHHHHHHHHHHhCCc
Q 022892 234 VDGVFMEVHDDPLN-APVDGPTQWPLRNLEELLEELVAIAKVSKGK 278 (290)
Q Consensus 234 A~G~~IEkH~t~dk-a~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~ 278 (290)
|+ |||||||||| .++||++||+|+||++||+.+|+++.++|+.
T Consensus 219 A~--vIEkH~tldr~~g~D~~~Sl~P~ef~~lv~~ir~i~~alG~~ 262 (350)
T 3g8r_A 219 AT--VFEKHVGLPTDQYGINNYSANPEQVRRWLAAAARALAMLGDG 262 (350)
T ss_dssp CC--EEEEEBCCCBTTBCCCTTCBCHHHHHHHHHHHHHHHHHHCCT
T ss_pred CC--EEEEecCcccCCCCcccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 97 9999999999 5789999999999999999999999999984
|
| >1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-51 Score=386.59 Aligned_cols=228 Identities=18% Similarity=0.226 Sum_probs=208.7
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCCC----------hhHHHHH
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGPG----------MVEGLKI 78 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~~----------~~~~l~~ 78 (290)
+|.++|++||||||||||.+++++||++|++++++++ +.+|+|.+|+| |||+++ |+|++ +++||++
T Consensus 48 ~G~d~rllvIaGPCsie~~e~aleyA~~L~~~~~~l~d~l~ivmR~yfeK-PRTs~g-~kGl~~dP~ld~s~~i~~GL~i 125 (350)
T 1n8f_A 48 KGNDDRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEK-PRTTVG-WKGLINDPHMDNSFQINDGLRI 125 (350)
T ss_dssp TTSCCCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTTTTEEEEEECCCCC-CCSSSS-CCCTTTCTTSSSCCCHHHHHHH
T ss_pred eCCCCceEEEEeCCcCCCHHHHHHHHHHHHHHHHhhccCeEEEEEecccc-CcCCcC-cCCCCCCCCccccccHHHHHHH
Confidence 4567899999999999999999999999999999996 88899999998 899999 99987 6899999
Q ss_pred HHHH---HHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH------
Q 022892 79 LEKV---KIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNS------ 149 (290)
Q Consensus 79 L~~~---~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~A------ 149 (290)
++++ ..++|+|++||++|+.+++++++++||++||||+++|+.+++.+|++++||+||||+++++++|.+|
T Consensus 126 lr~ll~~~~e~GlPv~TEvld~~~~~~vad~vd~~qIGAR~~esq~hr~~asg~~~PVg~Kngt~g~i~~~l~Ai~aa~~ 205 (350)
T 1n8f_A 126 ARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGA 205 (350)
T ss_dssp HHHHHHHHHHTTCCEEEECCCSSTHHHHGGGCSEEEECTTTTTCHHHHHHHHTCSSCEEEECCTTCCSHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCceEEeecCcccHHHHhhcCcEEEECCccccCHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHHHhC
Confidence 9999 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------HHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHH-HHHhcCCC--EEEeCCCCCCCCCCCccCCCCcc
Q 022892 150 ------------AEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLE-WMREANCP--VVADVTHSLQQPAGKKLDGGGVA 214 (290)
Q Consensus 150 ------------ve~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~-~lk~~~~p--V~~D~sHs~~~~~~~~~~~~~~~ 214 (290)
++++.+.||++++||+||++ +|+...+|++.++ .|++.|+| |++|+||++ ++..
T Consensus 206 ~h~fl~~~~~G~~~~v~t~GN~~~~lilRG~~-~~ny~~~di~~~~~~l~~~~lp~~VivD~SH~n----------s~k~ 274 (350)
T 1n8f_A 206 PHCFLSVTKWGHSAIVNTSGNGDCHIILRGGK-EPNYSAKHVAEVKEGLNKAGLPAQVMIDFSHAN----------SSKQ 274 (350)
T ss_dssp CCEEEEECTTSBEEEEEECCCSCEEEEECCSS-SCCCSHHHHHHHHHHHHHTTCCCCEEEECSGGG----------TTTC
T ss_pred CceeeeeCCCCcEEEEECCCCCCEEEEECCCC-CCCCCHHHHHHHHHHHHHcCCCCeEEEECCCcc----------cCcc
Confidence 88899999999999999997 3444567999999 78889999 999999997 3455
Q ss_pred CCCCcccHHHHHHHHHHcCC---CEEEEeeeCCCCCCCCCCCCCCCh
Q 022892 215 SGGLRELIPCIARTAIAVGV---DGVFMEVHDDPLNAPVDGPTQWPL 258 (290)
Q Consensus 215 ~~g~~~~~~~~a~aAva~GA---~G~~IEkH~t~dka~~D~~~sl~p 258 (290)
++|+++++..++ ++++.|+ +|+|||+|+ +|++|++++
T Consensus 275 ~~~Q~~vv~~la-a~ia~G~~~i~GlmiEshl------~dG~Q~l~~ 314 (350)
T 1n8f_A 275 FKKQMDVCADVC-QQIAGGEKAIIGVMVESHL------VEGNQSLES 314 (350)
T ss_dssp GGGHHHHHHHHH-HHHHTTCCSEEEEEEEBCS------SSBBCCSSS
T ss_pred ccccHHHHHHHH-HHHHcCCCcccEEEEEecc------CCCCcCCCC
Confidence 678888999999 8899999 999999995 666666655
|
| >1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=370.10 Aligned_cols=224 Identities=19% Similarity=0.264 Sum_probs=197.3
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCc------------ccCCCCChhHHH
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSS------------KSFRGPGMVEGL 76 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~------------~~~~g~~~~~~l 76 (290)
.|.+++++||||||||||.+++++||++|++++++++ +.+|+|.+|+| |||++ ++|+ +++||
T Consensus 63 ~g~d~rllvIaGPCSIed~e~aleyA~~Lk~~~~~~~d~l~iVmR~yfeK-PRTs~GwKGli~dP~ld~Sf~---g~~GL 138 (370)
T 1of8_A 63 TGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEK-PRTTVGWKGLINDPDVNNTFN---INKGL 138 (370)
T ss_dssp TTSCCSEEEEEECSCCCCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCC-CCSSSSCCCTTTCTTSSSCCC---HHHHH
T ss_pred cCCCCCeEEEEeCCcCCCHHHHHHHHHHHHHHHHhhccCeEEEEEecccc-ccCCccccccccCCCcCCCcC---HHHHH
Confidence 3567899999999999999999999999999999986 78899999998 89999 4555 37999
Q ss_pred HHHHHHH---HhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH----
Q 022892 77 KILEKVK---IAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNS---- 149 (290)
Q Consensus 77 ~~L~~~~---~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~A---- 149 (290)
++++++. +++|+|++||++|+.+++|+.|.+.|.+||||+++|+.+++.++++++||+||||+++++++|.+|
T Consensus 139 ~i~r~ll~~v~e~GlPvaTEvld~~~~qyv~Dllsw~aIGARt~esq~hre~Asgl~~PVg~Kngt~g~i~~~~~Ai~aa 218 (370)
T 1of8_A 139 QSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAA 218 (370)
T ss_dssp HHHHHHHHHHHTTTCCEEEECCSSSTHHHHGGGCSEEEECTTTTTCHHHHHHHHTCSSCEEEECCTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCceEEeecCcccHHHHHHHHhhccccCcccccHHHHHHHhcCCCeEEEcCCCCCCHHHHHHHHHHH
Confidence 9988888 899999999999999999999999999999999999888777789999999999999999999999
Q ss_pred --------------HHHHHHcCCCcEEEEeecCC-C-CCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCc
Q 022892 150 --------------AEKVRLAGNPNVMVCERGTM-F-GYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGV 213 (290)
Q Consensus 150 --------------ve~i~~~Gn~~i~L~~~gs~-~-~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~ 213 (290)
++++.+.||++++||+||++ | +|..+++|+ +...|+++|+||++|+||++
T Consensus 219 ~~~H~Fl~v~~~G~a~~v~t~GN~~~~lilRG~~~~~nY~~~~vd~-~~~~l~~~~~pVivD~SHan------------- 284 (370)
T 1of8_A 219 AHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAE-AKAQLPAGSNGLMIDYSHGN------------- 284 (370)
T ss_dssp TSCCEEEEECTTSBEEEEEECCCSCEEEEECCCTTCCCCSHHHHHH-HHHHCCTTCCCEEEESSGGG-------------
T ss_pred hCCceeeeeCCCCcEEEEEcCCCCCEEEEECCCCCCCCCCHHHHHH-HHHHHHHhCCCEEEeCcccc-------------
Confidence 78899999999999999995 5 688888887 55678778999999999997
Q ss_pred cCCCCccc-----HHHHHHHHHHcCCC---EEEEeeeCCCCCCCCCCCCCCChHHH
Q 022892 214 ASGGLREL-----IPCIARTAIAVGVD---GVFMEVHDDPLNAPVDGPTQWPLRNL 261 (290)
Q Consensus 214 ~~~g~~~~-----~~~~a~aAva~GA~---G~~IEkH~t~dka~~D~~~sl~p~~l 261 (290)
|++++ +...++++++.|++ |+|||+|+. |++|++++++|
T Consensus 285 ---s~k~~~~Q~~V~~~~~a~ia~G~d~i~GlmiEsh~~------dG~Q~l~~~~~ 331 (370)
T 1of8_A 285 ---SNKDFRNQPKVNDVVCEQIANGENAITGVMIESNIN------EGNQGIPAEGK 331 (370)
T ss_dssp ---GTSCGGGHHHHHHHHHHHHHTTCCSEEEEEEEBCSS------SBBCCC-----
T ss_pred ---hhhhhhhhhHHHHHHHHHHHcCCCcceEEEEEecCC------CCCCCCChhhh
Confidence 45555 78889999999999 999999985 67777766543
|
| >3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-40 Score=306.80 Aligned_cols=220 Identities=18% Similarity=0.198 Sum_probs=181.9
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCCC----------hhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGPG----------MVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~~----------~~~~l~~L 79 (290)
|.+++++||||||||||.+++++||++|+++.++.. ...|+|.+|+| |||+ ++|||++ +++||+++
T Consensus 46 G~d~rllVIaGPCSied~eq~leyA~~Lk~~~~~~~d~l~~vmR~y~~K-PRTs-~g~kGL~nDP~ld~s~~i~~GL~~~ 123 (346)
T 3tqk_A 46 GNDDRVAVVVGPCSIHDPAAAIEYATKLKEQVKKFHKDILIIMRVYFEK-PRTT-IGWKGFINDPDLDNSYNINKGLRLA 123 (346)
T ss_dssp TSSCSEEEEEECSSCSCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCC-CCSS-CSCCCTTTCTTSSSCCCHHHHHHHH
T ss_pred CCCCCEEEEEecCccCCHHHHHHHHHHHHHHHhhhcccceEEeeecccC-CCCC-cCccccccCCCCCCCccHHHHHHHH
Confidence 467899999999999999999999999999988776 34699999998 9999 8899874 46899997
Q ss_pred HHHH---HhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH-----
Q 022892 80 EKVK---IAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE----- 151 (290)
Q Consensus 80 ~~~~---~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave----- 151 (290)
+++. .++|+|++||++|+..+++++++++|.+||||++.|+.+++.++++++||+||||+++++++|.+|+.
T Consensus 124 R~ll~~~~e~GLpiatE~ld~~~~qyv~dlvs~~aIGARt~enq~hre~asg~s~PVg~Kngt~gti~~ai~Ai~aa~~p 203 (346)
T 3tqk_A 124 RNLLSDLTNMGLPCATEFLDVITPQYFAELITWGAIGARTVESQVHRELASGLSASIGFKNATNGDVQVAVDAVKSATYP 203 (346)
T ss_dssp HHHHHHHHHTTCCEEEECCSSSGGGGTGGGCSEEEECGGGTTCHHHHHHHTTCSSEEEEECCTTCCSHHHHHHHHHHTSC
T ss_pred HHHHHHHHhcCCCEEEEecCcCCHHHHHHHhheeeeCcccccCHHHHHHhcCCCCceEEeCCCCCchHHHhhHHHHHhCC
Confidence 7644 99999999999999999999999999999999999988777788999999999999999999999987
Q ss_pred -------------HHHHcCCCcEEEEeecCC--CCCCCCCCCchhHHHHHhcCC--CEEEeCCCCCCCCCCCccCCCCcc
Q 022892 152 -------------KVRLAGNPNVMVCERGTM--FGYNDLIVDPRNLEWMREANC--PVVADVTHSLQQPAGKKLDGGGVA 214 (290)
Q Consensus 152 -------------~i~~~Gn~~i~L~~~gs~--~~y~~~~~dL~~i~~lk~~~~--pV~~D~sHs~~~~~~~~~~~~~~~ 214 (290)
++.+.||++.|+++||++ ++|..++++ .+...|++.++ +|++||||+|+.
T Consensus 204 H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~gpNY~~~~v~-~a~~~l~k~~l~~~imVDcSH~NS~------------ 270 (346)
T 3tqk_A 204 HHFLSTTKSGSTAIFATKGNQNGHVILRGGASGPNFSKEHVD-DCIAKLKKADINTKVMIDCSHGNSQ------------ 270 (346)
T ss_dssp CEEEEECTTSCEEEEECCCCSCEEEEECCCTTCCCCSHHHHH-HHHHHHHHTTCCCCEEEESSHHHHT------------
T ss_pred ceEEeeCCCCcEEEEECCCCCCEEEEecCCCCCCCCCHHHHH-HHHHHHHhCCCCCeEEEecCccccc------------
Confidence 467889999999999985 357666666 45666766554 599999999721
Q ss_pred CCCCcccHHHHHH----HHH-HcCCCEEEEeeeCCCCCC
Q 022892 215 SGGLRELIPCIAR----TAI-AVGVDGVFMEVHDDPLNA 248 (290)
Q Consensus 215 ~~g~~~~~~~~a~----aAv-a~GA~G~~IEkH~t~dka 248 (290)
.++..++.++. +-. ...+.|+|||+|+...+.
T Consensus 271 --K~~~~Q~~V~~~v~~q~~~~~~I~GvMiES~l~~G~Q 307 (346)
T 3tqk_A 271 --KDHSKQISVLADICEQIKHSNDIFGVMIESNLVAGNQ 307 (346)
T ss_dssp --TCGGGHHHHHHHHHHHHHHCSSEEEEEEEBCSEEEEC
T ss_pred --ccHHHHHHHHHHHHHHHhcCCceeeeeHHhhhhccCC
Confidence 23333333332 211 356899999999865544
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0034 Score=57.63 Aligned_cols=171 Identities=19% Similarity=0.209 Sum_probs=108.3
Q ss_pred CeEEEEccCCc----------cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH----HHHH
Q 022892 16 PFFLLAGPNVI----------ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK----ILEK 81 (290)
Q Consensus 16 ~~~iIAgpcsi----------en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~----~L~~ 81 (290)
++.|+...+.- .+.+..++.|+++++. ||+++--.... |.|++- ....++.++ .++.
T Consensus 14 ~~~imGilN~TpdSFsdgg~~~~~~~a~~~a~~~v~~----GAdiIDIGges----trPga~-~v~~~eE~~rv~pvi~~ 84 (282)
T 1aj0_A 14 HPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINA----GATIIDVGGES----TRPGAA-EVSVEEELQRVIPVVEA 84 (282)
T ss_dssp SCEEEEEEECCTTTSCCCCCCTHHHHHHHHHHHHHHH----TCSEEEEESSC----CSTTCC-CCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCccccccccCCHHHHHHHHHHHHHC----CCCEEEECCCc----CCCCCC-cCCHHHHHHHHHHHHHH
Confidence 56777776652 1357788888888885 99998776543 223311 111134443 3445
Q ss_pred HHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeC--CCCCC--------------HH
Q 022892 82 VKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKK--GQFCA--------------SS 144 (290)
Q Consensus 82 ~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilst--G~~~t--------------l~ 144 (290)
+.++.++|+..+-++++.++...+ .++++-=-+.. ....+++.+++.+.||++.. |+..+ .+
T Consensus 85 l~~~~~~piSIDT~~~~va~aAl~aGa~iINdvsg~-~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~ 163 (282)
T 1aj0_A 85 IAQRFEVWISVDTSKPEVIRESAKVGAHIINDIRSL-SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNR 163 (282)
T ss_dssp HHHHCCCEEEEECCCHHHHHHHHHTTCCEEEETTTT-CSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHH
T ss_pred HHhhcCCeEEEeCCCHHHHHHHHHcCCCEEEECCCC-CCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHH
Confidence 556669999999999999988766 57776433333 44567888999999999954 44323 67
Q ss_pred HHHHHHHHHHHcCCC-cEEEEeecCCCCCCCCCCCchhHHHH---HhcCCCEEEeCC
Q 022892 145 VMVNSAEKVRLAGNP-NVMVCERGTMFGYNDLIVDPRNLEWM---REANCPVVADVT 197 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~-~i~L~~~gs~~~y~~~~~dL~~i~~l---k~~~~pV~~D~s 197 (290)
.....++.+.+.|-+ +=+++..|..|+- ...-|+..+..+ +++++|+.+-.|
T Consensus 164 ~l~~~i~~a~~~Gi~~~~IilDPg~gf~k-~~~~n~~ll~~l~~~~~~g~P~l~G~S 219 (282)
T 1aj0_A 164 YFIEQIARCEQAGIAKEKLLLDPGFGFGK-NLSHNYSLLARLAEFHHFNLPLLVGMS 219 (282)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEECCTTSSC-CHHHHHHHHHTGGGGGGGCSCBEECCT
T ss_pred HHHHHHHHHHHcCCChhhEEEeCCCCccc-CHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 777788888888855 2466678765422 111233333333 336899877333
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0028 Score=58.12 Aligned_cols=158 Identities=9% Similarity=0.047 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH----HHHHHHhcCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI----LEKVKIAYDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~----L~~~~~~~Gi~~~s~~~d~~~~~~l 103 (290)
+.+..++.|+++++ .||+++--.... |.|++- ....++.++. ++.+.++ ++++..+-++++.++..
T Consensus 27 ~~~~a~~~a~~~v~----~GAdiIDIGges----trpga~-~v~~~eE~~Rv~pvi~~l~~~-~~piSIDT~~~~va~aA 96 (280)
T 1eye_A 27 DLDDAVKHGLAMAA----AGAGIVDVGGES----SRPGAT-RVDPAVETSRVIPVVKELAAQ-GITVSIDTMRADVARAA 96 (280)
T ss_dssp SHHHHHHHHHHHHH----TTCSEEEEECC-------------------HHHHHHHHHHHHHT-TCCEEEECSCHHHHHHH
T ss_pred CHHHHHHHHHHHHH----CCCCEEEECCcc----CCCCCC-CCCHHHHHHHHHHHHHHhhcC-CCEEEEeCCCHHHHHHH
Confidence 57888999999888 599998776433 223211 0111233333 3444443 99999999999999887
Q ss_pred hh-hccee-cccCCccCCHHHHHHHHhcCCeEEEeC--CCCCC---------------HHHHHHHHHHHHHcCCC-cEEE
Q 022892 104 GK-VADII-QIPAFLCRQTDLLVAAAKTGKIINIKK--GQFCA---------------SSVMVNSAEKVRLAGNP-NVMV 163 (290)
Q Consensus 104 ~~-~~d~~-kIgs~~~~n~~lL~~~a~~~~PVilst--G~~~t---------------l~e~~~Ave~i~~~Gn~-~i~L 163 (290)
.+ .++++ -|.+.. ....+++.+++.+.||++.. |+..+ .+.....++.+.+.|-+ +=++
T Consensus 97 l~aGa~iINdvsg~~-~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~Ii 175 (280)
T 1eye_A 97 LQNGAQMVNDVSGGR-ADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLV 175 (280)
T ss_dssp HHTTCCEEEETTTTS-SCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred HHcCCCEEEECCCCC-CCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHcCCChhhEE
Confidence 66 57766 333332 23467888999999999954 33212 56666778888888855 2467
Q ss_pred EeecCCCCCCCCCCCc---hhHHHHHhcCCCEEEeCC
Q 022892 164 CERGTMFGYNDLIVDP---RNLEWMREANCPVVADVT 197 (290)
Q Consensus 164 ~~~gs~~~y~~~~~dL---~~i~~lk~~~~pV~~D~s 197 (290)
+..|..|.-.. .-|+ +.+..++++++|+.+-.|
T Consensus 176 lDPg~Gf~k~~-~~n~~ll~~l~~~~~~g~Pvl~G~S 211 (280)
T 1eye_A 176 LDPGLGFAKTA-QHNWAILHALPELVATGIPVLVGAS 211 (280)
T ss_dssp EECCTTSSCCH-HHHHHHHHTHHHHHTTSSCBEECCT
T ss_pred EECCCCcccCH-HHHHHHHHHHHHhhcCCCCEEEEec
Confidence 78887543211 1233 445555557899877333
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0038 Score=54.25 Aligned_cols=172 Identities=17% Similarity=0.136 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
..+.|+.+.+ .|++++....... . + .+....+..+++++++.++|++. .+.++++++.+.+ .+|
T Consensus 35 ~~~~a~~~~~----~G~d~i~v~~~~~---~----~--~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad 101 (253)
T 1h5y_A 35 PVEMAVRYEE----EGADEIAILDITA---A----P--EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGAD 101 (253)
T ss_dssp HHHHHHHHHH----TTCSCEEEEECCC---C----T--TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCS
T ss_pred HHHHHHHHHH----cCCCEEEEEeCCc---c----c--cCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCC
Confidence 4566666654 6999776543221 0 1 12234577888899999999986 3566677776665 699
Q ss_pred eecccCCccCCHHHHHHHH-hcCCe-E-------------EEeC--CCC---CCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 109 IIQIPAFLCRQTDLLVAAA-KTGKI-I-------------NIKK--GQF---CASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a-~~~~P-V-------------ilst--G~~---~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
.+-|++..+.+..++..+. ..+.+ + .++. +.. .+..|+. +.+...|-.. ++++...
T Consensus 102 ~V~i~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~---~~~~~~G~d~-i~~~~~~ 177 (253)
T 1h5y_A 102 KVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWA---KEVEELGAGE-ILLTSID 177 (253)
T ss_dssp EEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHH---HHHHHHTCSE-EEEEETT
T ss_pred EEEEChHHhhCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHH---HHHHhCCCCE-EEEeccc
Confidence 9999998888777666543 33421 1 1221 210 1344443 2334456544 4444332
Q ss_pred CCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 169 MFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 169 ~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..+. ....++..+..+++ .++||+.+..-+ . ..-...+...||+|+++=+.+
T Consensus 178 ~~g~-~~~~~~~~i~~l~~~~~~pvia~GGi~--------------------~--~~~~~~~~~~Ga~~v~vgsal 230 (253)
T 1h5y_A 178 RDGT-GLGYDVELIRRVADSVRIPVIASGGAG--------------------R--VEHFYEAAAAGADAVLAASLF 230 (253)
T ss_dssp TTTT-CSCCCHHHHHHHHHHCSSCEEEESCCC--------------------S--HHHHHHHHHTTCSEEEESHHH
T ss_pred CCCC-cCcCCHHHHHHHHHhcCCCEEEeCCCC--------------------C--HHHHHHHHHcCCcHHHHHHHH
Confidence 1111 12246778888887 789998853221 1 122233457899999998876
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.02 Score=49.12 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE---eecCcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT---DVHETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s---~~~d~~~~~~l~ 104 (290)
+.+...+.++++.+ .|+++|-...-+ ...++.+++++++++++++. ++.+++.++.+.
T Consensus 17 d~~~~~~~~~~~~~----~G~~~i~l~~~~---------------~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~ 77 (212)
T 2v82_A 17 TPDEALAHVGAVID----AGFDAVEIPLNS---------------PQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALA 77 (212)
T ss_dssp CHHHHHHHHHHHHH----HTCCEEEEETTS---------------TTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----CCCCEEEEeCCC---------------hhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHH
Confidence 66677777777766 599887542111 12356778888888987665 566777888877
Q ss_pred h-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHH
Q 022892 105 K-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLE 183 (290)
Q Consensus 105 ~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~ 183 (290)
+ .+|++-+|+ .+.++++.+.+.+.++++. .. |++|+..+.+ .|-+.+. + | +.....+..+.
T Consensus 78 ~~Gad~V~~~~---~~~~~~~~~~~~g~~~~~g--~~-t~~e~~~a~~----~G~d~v~-v-----~--~t~~~g~~~~~ 139 (212)
T 2v82_A 78 RMGCQLIVTPN---IHSEVIRRAVGYGMTVCPG--CA-TATEAFTALE----AGAQALK-I-----F--PSSAFGPQYIK 139 (212)
T ss_dssp HTTCCEEECSS---CCHHHHHHHHHTTCEEECE--EC-SHHHHHHHHH----TTCSEEE-E-----T--THHHHCHHHHH
T ss_pred HcCCCEEEeCC---CCHHHHHHHHHcCCCEEee--cC-CHHHHHHHHH----CCCCEEE-E-----e--cCCCCCHHHHH
Confidence 7 689887776 4567888887889998876 34 8998876643 4654443 3 1 11123456677
Q ss_pred HHHh-cC--CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCC
Q 022892 184 WMRE-AN--CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 184 ~lk~-~~--~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~ 245 (290)
.+++ .. +||+.+.-=+ ..-.....++||+|+++=+-+..
T Consensus 140 ~l~~~~~~~ipvia~GGI~-----------------------~~~i~~~~~~Ga~gv~vGsai~~ 181 (212)
T 2v82_A 140 ALKAVLPSDIAVFAVGGVT-----------------------PENLAQWIDAGCAGAGLGSDLYR 181 (212)
T ss_dssp HHHTTSCTTCEEEEESSCC-----------------------TTTHHHHHHHTCSEEEECTTTCC
T ss_pred HHHHhccCCCeEEEeCCCC-----------------------HHHHHHHHHcCCCEEEEChHHhC
Confidence 7776 54 8887742111 01123445679999998777643
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=97.25 E-value=0.031 Score=53.00 Aligned_cols=164 Identities=13% Similarity=0.027 Sum_probs=100.8
Q ss_pred hcCCcEEEeecCc----ccH-HH------Hhhhcceecc--------cCCccCCHHHH----HHHHh--------cCCeE
Q 022892 85 AYDIPIVTDVHET----VQC-EE------VGKVADIIQI--------PAFLCRQTDLL----VAAAK--------TGKII 133 (290)
Q Consensus 85 ~~Gi~~~s~~~d~----~~~-~~------l~~~~d~~kI--------gs~~~~n~~lL----~~~a~--------~~~PV 133 (290)
..+.|+...+.-. +.+ +| +.+++|++-| |.+.+++.+.+ +++.+ ..+||
T Consensus 144 ~~~~pv~vniggn~~t~~~~~dy~~~~~~~~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv 223 (367)
T 3zwt_A 144 EDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAV 223 (367)
T ss_dssp HTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEE
T ss_pred cCCceEEEEEecCCCCCcCHHHHHHHHHHHhhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceE
Confidence 3589999988652 122 22 2223555533 34456666544 43321 67999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC-------------CCC---CCCCchhHHHHHh-c--CCCEEE
Q 022892 134 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG-------------YND---LIVDPRNLEWMRE-A--NCPVVA 194 (290)
Q Consensus 134 ilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~-------------y~~---~~~dL~~i~~lk~-~--~~pV~~ 194 (290)
++|-....+.+++...++.+.+.|-+-|++.-++.... +.- ..+.++.+..+++ . ++||+.
T Consensus 224 ~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~ 303 (367)
T 3zwt_A 224 LVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIG 303 (367)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEE
Confidence 99999888888999999999999987666554432210 000 0123567777877 6 799987
Q ss_pred eCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 195 D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
+..=. . ..-+..++.+||++++|=+-+-. + .|.-++++.+.+++.-..
T Consensus 304 ~GGI~-----------------s-----~~da~~~l~~GAd~V~vgra~l~-----~-----gP~~~~~i~~~l~~~m~~ 351 (367)
T 3zwt_A 304 VGGVS-----------------S-----GQDALEKIRAGASLVQLYTALTF-----W-----GPPVVGKVKRELEALLKE 351 (367)
T ss_dssp ESSCC-----------------S-----HHHHHHHHHHTCSEEEESHHHHH-----H-----CTHHHHHHHHHHHHHHHH
T ss_pred ECCCC-----------------C-----HHHHHHHHHcCCCEEEECHHHHh-----c-----CcHHHHHHHHHHHHHHHH
Confidence 43211 1 34466677889999988765411 1 356777787777765555
Q ss_pred hCCccc
Q 022892 275 SKGKQR 280 (290)
Q Consensus 275 lg~~~~ 280 (290)
.|-+++
T Consensus 352 ~G~~~i 357 (367)
T 3zwt_A 352 QGFGGV 357 (367)
T ss_dssp TTCSSH
T ss_pred cCCCCH
Confidence 554443
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.045 Score=49.77 Aligned_cols=188 Identities=16% Similarity=0.150 Sum_probs=115.5
Q ss_pred hHHhhhcCCCCeEEEEccCCc-------cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH
Q 022892 6 ALFNQLKAAEPFFLLAGPNVI-------ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI 78 (290)
Q Consensus 6 ~~~~~i~~~~~~~iIAgpcsi-------en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~ 78 (290)
+++..+... .+-||||.--. ...-...++|+... +.|+.++.--+-. ..| ...+..
T Consensus 42 ~f~~al~~~-~~~~IaE~K~asPs~g~i~~~~~p~~~A~~y~----~~GA~~isvltd~-------~~f-----~Gs~~~ 104 (272)
T 3qja_A 42 DVMAALREP-GIGVIAEVKRASPSAGALATIADPAKLAQAYQ----DGGARIVSVVTEQ-------RRF-----QGSLDD 104 (272)
T ss_dssp CHHHHHTSS-SCEEEEEEC-------------CHHHHHHHHH----HTTCSEEEEECCG-------GGH-----HHHHHH
T ss_pred CHHHHHhcC-CCeEEEEEecCCCCCCccCCCCCHHHHHHHHH----HcCCCEEEEecCh-------hhc-----CCCHHH
Confidence 455555433 37899985422 11112345555544 4799988643222 112 234778
Q ss_pred HHHHHHhcCCcEEEee--cCcccHHHHhh-hcceecccCCccCCHH---HHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 79 LEKVKIAYDIPIVTDV--HETVQCEEVGK-VADIIQIPAFLCRQTD---LLVAAAKTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~--~d~~~~~~l~~-~~d~~kIgs~~~~n~~---lL~~~a~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
|+++++..++|++.-= .|+.+++.... .+|.+-++...+.+.. +++.+...|+.+++... |.+|+..|.+
T Consensus 105 l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~---t~ee~~~A~~- 180 (272)
T 3qja_A 105 LDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVH---TEQEADRALK- 180 (272)
T ss_dssp HHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHH-
T ss_pred HHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcC---CHHHHHHHHH-
Confidence 8888888999998743 34445676666 6999999877776543 45556678999998763 8999888764
Q ss_pred HHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 022892 153 VRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 229 (290)
Q Consensus 153 i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aA 229 (290)
.|-+-|.+-.+. .....+|+..+..|.+ . ++||+.-+- + .. +.-....
T Consensus 181 ---~Gad~IGv~~r~----l~~~~~dl~~~~~l~~~v~~~~pvVaegG--I---------------~t-----~edv~~l 231 (272)
T 3qja_A 181 ---AGAKVIGVNARD----LMTLDVDRDCFARIAPGLPSSVIRIAESG--V---------------RG-----TADLLAY 231 (272)
T ss_dssp ---HTCSEEEEESBC----TTTCCBCTTHHHHHGGGSCTTSEEEEESC--C---------------CS-----HHHHHHH
T ss_pred ---CCCCEEEECCCc----ccccccCHHHHHHHHHhCcccCEEEEECC--C---------------CC-----HHHHHHH
Confidence 365544443221 1123467777777876 4 688866211 1 01 3334556
Q ss_pred HHcCCCEEEEeeeC
Q 022892 230 IAVGVDGVFMEVHD 243 (290)
Q Consensus 230 va~GA~G~~IEkH~ 243 (290)
..+||+|+++=+.+
T Consensus 232 ~~~GadgvlVGsal 245 (272)
T 3qja_A 232 AGAGADAVLVGEGL 245 (272)
T ss_dssp HHTTCSEEEECHHH
T ss_pred HHcCCCEEEEcHHH
Confidence 78899999998876
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.013 Score=51.42 Aligned_cols=185 Identities=16% Similarity=0.134 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
...++|+.+.+ .|++++-.. ++ .. .+ .+....+..+++++++.++|++. -+.++++++.+.+ .+
T Consensus 32 d~~~~a~~~~~----~Gad~i~v~--d~-~~----~~--~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Ga 98 (252)
T 1ka9_F 32 DPVEAARAYDE----AGADELVFL--DI-SA----TH--EERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGA 98 (252)
T ss_dssp CHHHHHHHHHH----HTCSCEEEE--EC-CS----ST--TCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTC
T ss_pred CHHHHHHHHHH----cCCCEEEEE--cC-Cc----cc--cCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCC
Confidence 45777877766 599976543 21 11 01 12234577889999999999997 4555677777666 69
Q ss_pred ceecccCCccCCHHHHHHHHh-cC---CeEEEeC----C--------------CCCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 108 DIIQIPAFLCRQTDLLVAAAK-TG---KIINIKK----G--------------QFCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~-~~---~PVilst----G--------------~~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
|.+-+|+..+.+.++++++.+ .+ ..+.++. | .. +.+.++.+ ...|-..+++..
T Consensus 99 d~V~lg~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~-~~e~~~~~----~~~G~~~i~~~~ 173 (252)
T 1ka9_F 99 DKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLH-AVEWAVKG----VELGAGEILLTS 173 (252)
T ss_dssp SEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEE-HHHHHHHH----HHHTCCEEEEEE
T ss_pred CEEEEChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCc-HHHHHHHH----HHcCCCEEEEec
Confidence 999999999988877766543 23 2345543 1 11 23333333 334655554443
Q ss_pred ecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 166 RGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
++ .-+.. .-.|+..+..+++ .++||+....-+ . +.-+......||+|+++=+-+
T Consensus 174 ~~-~~g~~-~g~~~~~i~~l~~~~~ipvia~GGI~-----------------~-----~~d~~~~~~~Gadgv~vgsal- 228 (252)
T 1ka9_F 174 MD-RDGTK-EGYDLRLTRMVAEAVGVPVIASGGAG-----------------R-----MEHFLEAFQAGAEAALAASVF- 228 (252)
T ss_dssp TT-TTTTC-SCCCHHHHHHHHHHCSSCEEEESCCC-----------------S-----HHHHHHHHHTTCSEEEESHHH-
T ss_pred cc-CCCCc-CCCCHHHHHHHHHHcCCCEEEeCCCC-----------------C-----HHHHHHHHHCCCHHHHHHHHH-
Confidence 22 21111 2247888888888 799998732221 1 222333456899999998766
Q ss_pred CCCCCCCCCCCCChHHHHHHH
Q 022892 245 PLNAPVDGPTQWPLRNLEELL 265 (290)
Q Consensus 245 ~dka~~D~~~sl~p~~l~~lv 265 (290)
+...+++.++.+.+
T Consensus 229 -------~~~~~~~~~~~~~l 242 (252)
T 1ka9_F 229 -------HFGEIPIPKLKRYL 242 (252)
T ss_dssp -------HTTSSCHHHHHHHH
T ss_pred -------HcCCCCHHHHHHHH
Confidence 33345666665543
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.036 Score=51.16 Aligned_cols=188 Identities=19% Similarity=0.232 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH----HHHHHHHhcCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK----ILEKVKIAYDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~----~L~~~~~~~Gi~~~s~~~d~~~~~~l 103 (290)
+.+..++.|+++++. ||+++=-.... |.|++ .....++.++ .++.+.++ ++++.-+-++++.++..
T Consensus 50 ~~~~a~~~a~~~v~~----GAdIIDIGgeS----TrPga-~~v~~~eE~~Rv~pvI~~l~~~-~vpiSIDT~~~~Va~aA 119 (294)
T 2dqw_A 50 DPERALERAREMVAE----GADILDLGAES----TRPGA-APVPVEEEKRRLLPVLEAVLSL-GVPVSVDTRKPEVAEEA 119 (294)
T ss_dssp ---CCHHHHHHHHHH----TCSEEEEECC----------------CCHHHHHHHHHHHHHTT-CSCEEEECSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC----CCCEEEECCCc----CCCCC-CCCCHHHHHHHHHHHHHHHHhC-CCeEEEECCCHHHHHHH
Confidence 345577888888875 99998766543 22221 1111122333 34444444 99999999999999887
Q ss_pred hh-hccee-cccCCccCCHHHHHHHHhcCCeEEEeC---CCCCC--------------HHHHHHHHHHHHHcCCCcEEEE
Q 022892 104 GK-VADII-QIPAFLCRQTDLLVAAAKTGKIINIKK---GQFCA--------------SSVMVNSAEKVRLAGNPNVMVC 164 (290)
Q Consensus 104 ~~-~~d~~-kIgs~~~~n~~lL~~~a~~~~PVilst---G~~~t--------------l~e~~~Ave~i~~~Gn~~i~L~ 164 (290)
.+ ..+++ -|.+. ....++..+++.+.||++.. |+..| .+...+.++.+.+.|-++ +++
T Consensus 120 l~aGa~iINdVsg~--~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~-Iil 196 (294)
T 2dqw_A 120 LKLGAHLLNDVTGL--RDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGVPQ-VVL 196 (294)
T ss_dssp HHHTCSEEECSSCS--CCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTCSC-EEE
T ss_pred HHhCCCEEEECCCC--CChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHCCCCc-EEE
Confidence 66 57766 34433 56688898999999999965 55434 445666677888889774 666
Q ss_pred eecCCCCCCCCCCCch---hHHHHHhcCCCEEEeCCCC------CCCCCCCccCCCCccCCCCcccHH-HHHHHHHHcCC
Q 022892 165 ERGTMFGYNDLIVDPR---NLEWMREANCPVVADVTHS------LQQPAGKKLDGGGVASGGLRELIP-CIARTAIAVGV 234 (290)
Q Consensus 165 ~~gs~~~y~~~~~dL~---~i~~lk~~~~pV~~D~sHs------~~~~~~~~~~~~~~~~~g~~~~~~-~~a~aAva~GA 234 (290)
..|..|+-. ..-|+. .+..++++++|+.+-.|.- .+.|. ...|.... ..+..|+..|+
T Consensus 197 DPG~Gf~kt-~~~n~~ll~~l~~~~~~g~Pvl~G~Srksfig~l~g~p~-----------~~~R~~~t~a~~~~a~~~Ga 264 (294)
T 2dqw_A 197 DPGFGFGKL-LEHNLALLRRLDEIVALGHPVLVGLSRKRTIGELSGVED-----------PAQRVHGSVAAHLFAVMKGV 264 (294)
T ss_dssp ECCTTSSCC-HHHHHHHHHTHHHHHTTSSCBEECCTTCHHHHHHHTCCS-----------GGGCHHHHHHHHHHHHHTTC
T ss_pred cCCCCcccC-HHHHHHHHHHHHHHhcCCCCEEEEeccchhhhhhcCCCc-----------hhhhHHHHHHHHHHHHHcCC
Confidence 787654321 112333 3444444689987633321 00000 01222222 33445678899
Q ss_pred CEEEEeee
Q 022892 235 DGVFMEVH 242 (290)
Q Consensus 235 ~G~~IEkH 242 (290)
+ ++=.|
T Consensus 265 ~--IvRvH 270 (294)
T 2dqw_A 265 R--LLRVH 270 (294)
T ss_dssp C--EEEES
T ss_pred c--EEEcC
Confidence 7 89899
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.043 Score=51.18 Aligned_cols=170 Identities=16% Similarity=0.133 Sum_probs=99.9
Q ss_pred CCeEEEEccCCc----------cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH----HH
Q 022892 15 EPFFLLAGPNVI----------ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI----LE 80 (290)
Q Consensus 15 ~~~~iIAgpcsi----------en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~----L~ 80 (290)
+++.|+...++- -+.+..++.|+++++ .||++|=-.... .| |+ .....++.++. ++
T Consensus 40 ~~~~vMGIlNvTPDSFsdgg~~~~~~~a~~~A~~~v~----~GAdIIDIGgeS--Tr--PG--~~v~~~eEl~Rv~pvI~ 109 (318)
T 2vp8_A 40 DRALIMAIVNRTPDSFYDKGATFSDAAARDAVHRAVA----DGADVIDVGGVK--AG--PG--ERVDVDTEITRLVPFIE 109 (318)
T ss_dssp SSCEEEEEEC--------------CHHHHHHHHHHHH----TTCSEEEEC----------------CHHHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCCcccCCCccCCHHHHHHHHHHHHH----CCCCEEEECCCc--CC--CC--CCCCHHHHHHHHHHHHH
Confidence 356777766651 134567778888877 599998766443 12 22 11222344443 45
Q ss_pred HHHHhc-CCcEEEeecCcccHHHHhh-hccee-cccCCccCCHHHHHHHHhcCCeEEEeC--CC-CCCH-----------
Q 022892 81 KVKIAY-DIPIVTDVHETVQCEEVGK-VADII-QIPAFLCRQTDLLVAAAKTGKIINIKK--GQ-FCAS----------- 143 (290)
Q Consensus 81 ~~~~~~-Gi~~~s~~~d~~~~~~l~~-~~d~~-kIgs~~~~n~~lL~~~a~~~~PVilst--G~-~~tl----------- 143 (290)
.+.++. ++++.-+-++++.++...+ ..+++ -|.+.. ...++..+++.+.||++.. |+ ..|+
T Consensus 110 ~l~~~~~~vpISIDT~~~~VaeaAl~aGa~iINDVsg~~--d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~ 187 (318)
T 2vp8_A 110 WLRGAYPDQLISVDTWRAQVAKAACAAGADLINDTWGGV--DPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTR 187 (318)
T ss_dssp HHHHHSTTCEEEEECSCHHHHHHHHHHTCCEEEETTSSS--STTHHHHHHHHTCEEEEECC-------------CCSCHH
T ss_pred HHHhhCCCCeEEEeCCCHHHHHHHHHhCCCEEEECCCCC--chHHHHHHHHhCCCEEEECCCCCCccccccccccccccc
Confidence 556666 9999999999999988766 56765 444443 4577888999999999966 43 2121
Q ss_pred -------HHHHHHHHHHHHcCCC-cEEEEeecCCCCCCCCCCCc---hhHHHHHhcCCCEEEeCC
Q 022892 144 -------SVMVNSAEKVRLAGNP-NVMVCERGTMFGYNDLIVDP---RNLEWMREANCPVVADVT 197 (290)
Q Consensus 144 -------~e~~~Ave~i~~~Gn~-~i~L~~~gs~~~y~~~~~dL---~~i~~lk~~~~pV~~D~s 197 (290)
++..+.++.+.+.|-+ +=+++..|..|.-. ..-|+ +.+..++++++|+.+-.|
T Consensus 188 dv~~ev~~~l~~~i~~a~~aGI~~~~IilDPG~GF~Kt-~~~nl~ll~~l~~l~~lg~PvL~G~S 251 (318)
T 2vp8_A 188 GVVDAVISQVTAAAERAVAAGVAREKVLIDPAHDFGKN-TFHGLLLLRHVADLVMTGWPVLMALS 251 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEETTTTCCTT-SHHHHHHHHTHHHHHTTSSCBEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHcCCChhhEEEcCCCCcccC-HHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3344456677788854 34677888765321 11233 444445557899877333
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.077 Score=45.61 Aligned_cols=196 Identities=15% Similarity=0.088 Sum_probs=109.3
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCC-hhHHHHHHHHHHHhcCCcEEEee
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPG-MVEGLKILEKVKIAYDIPIVTDV 94 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~-~~~~l~~L~~~~~~~Gi~~~s~~ 94 (290)
+++.|..+-...+. ..+.++++.+ .|+++|-......++ ..++ +.+..+.+++.++.+|++++..
T Consensus 19 ~i~~It~~~~~~~~--~~~~~~~~~~----~G~~~i~l~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~v~v~v~- 84 (227)
T 2tps_A 19 SVYFIMGSNNTKAD--PVTVVQKALK----GGATLYQFREKGGDA-------LTGEARIKFAEKAQAACREAGVPFIVN- 84 (227)
T ss_dssp TEEEEECGGGCSSC--HHHHHHHHHH----HTCSEEEECCCSTTC-------CCHHHHHHHHHHHHHHHHHHTCCEEEE-
T ss_pred CEEEEECCccccch--HHHHHHHHHH----CCCCEEEEecCCCCH-------hHHHHHHHHHHHHHHHHHHcCCeEEEc-
Confidence 57777754321122 5666766666 599988654332111 1110 0345666778888899999885
Q ss_pred cCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE---eecCC
Q 022892 95 HETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTG-KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC---ERGTM 169 (290)
Q Consensus 95 ~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~-~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~---~~gs~ 169 (290)
+.++.+.+ .+|.+.+|..+.. .. +.....+ +.+.++. . |++|+..+. ..|-+.+.+. ..++.
T Consensus 85 ---~~~~~a~~~gad~v~l~~~~~~-~~--~~~~~~g~~~~~~s~--~-t~~e~~~a~----~~g~d~v~~~~v~~t~~~ 151 (227)
T 2tps_A 85 ---DDVELALNLKADGIHIGQEDAN-AK--EVRAAIGDMILGVSA--H-TMSEVKQAE----EDGADYVGLGPIYPTETK 151 (227)
T ss_dssp ---SCHHHHHHHTCSEEEECTTSSC-HH--HHHHHHTTSEEEEEE--C-SHHHHHHHH----HHTCSEEEECCSSCCCSS
T ss_pred ---CHHHHHHHcCCCEEEECCCccC-HH--HHHHhcCCcEEEEec--C-CHHHHHHHH----hCCCCEEEECCCcCCCCC
Confidence 45666666 6999999887653 21 1112234 4455543 3 788865543 3465444431 22221
Q ss_pred CCCCCCCCCchhHHHHHh-cC-CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 FGYNDLIVDPRNLEWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~-~~-~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
.++ ....++..+..+++ .+ +||+...-=+ ..+ ...+..+||+|+.+=+-+.-.
T Consensus 152 ~~~-~~~~~~~~l~~~~~~~~~~pvia~GGI~---------------~~n--------v~~~~~~Ga~gv~vgs~i~~~- 206 (227)
T 2tps_A 152 KDT-RAVQGVSLIEAVRRQGISIPIVGIGGIT---------------IDN--------AAPVIQAGADGVSMISAISQA- 206 (227)
T ss_dssp SSC-CCCCTTHHHHHHHHTTCCCCEEEESSCC---------------TTT--------SHHHHHTTCSEEEESHHHHTS-
T ss_pred CCC-CCccCHHHHHHHHHhCCCCCEEEEcCCC---------------HHH--------HHHHHHcCCCEEEEhHHhhcC-
Confidence 111 12346777888877 66 9997732111 011 223456799999987766321
Q ss_pred CCCCCCCCCCh-HHHHHHHHHHHHH
Q 022892 248 APVDGPTQWPL-RNLEELLEELVAI 271 (290)
Q Consensus 248 a~~D~~~sl~p-~~l~~lv~~ir~~ 271 (290)
-+| +.++++++.++..
T Consensus 207 --------~d~~~~~~~~~~~~~~~ 223 (227)
T 2tps_A 207 --------EDPESAARKFREEIQTY 223 (227)
T ss_dssp --------SCHHHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHhc
Confidence 135 5666776666554
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0049 Score=54.14 Aligned_cols=170 Identities=12% Similarity=0.076 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD--VHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d 108 (290)
..+.|+.+.+ +|++.+-....+. .|.+.. .. ..+++++++.++|+... +.++++++.+.+ .+|
T Consensus 34 ~~~~a~~~~~----~Gad~i~v~~~d~-------~~~~~~--~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad 99 (244)
T 1vzw_A 34 PLEAALAWQR----SGAEWLHLVDLDA-------AFGTGD--NR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCT 99 (244)
T ss_dssp HHHHHHHHHH----TTCSEEEEEEHHH-------HHTSCC--CH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred HHHHHHHHHH----cCCCEEEEecCch-------hhcCCC--hH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCC
Confidence 4666766655 6999876543331 122221 22 77888889999999884 567777887766 699
Q ss_pred eecccCCccCCHHHHHHHHh-cCC--eEEEeCC--C---------CCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CCCC
Q 022892 109 IIQIPAFLCRQTDLLVAAAK-TGK--IINIKKG--Q---------FCASSVMVNSAEKVRLAGNPNVMVCERGTM-FGYN 173 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~-~~~--PVilstG--~---------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~~y~ 173 (290)
.+-+|+..+.|.+++.++.+ .+. -+.++.. . +.+..|+ ++.+...|-..+.+ +.... ..+.
T Consensus 100 ~V~lg~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~---~~~~~~~G~~~i~~-~~~~~~~~~~ 175 (244)
T 1vzw_A 100 RVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYET---LDRLNKEGCARYVV-TDIAKDGTLQ 175 (244)
T ss_dssp EEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHH---HHHHHHTTCCCEEE-EEC-------
T ss_pred EEEECchHhhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHH---HHHHHhCCCCEEEE-eccCcccccC
Confidence 99999999998876666433 222 2223321 0 0034443 22334456655544 43322 1121
Q ss_pred CCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc---CCCEEEEeeeC
Q 022892 174 DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV---GVDGVFMEVHD 243 (290)
Q Consensus 174 ~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~---GA~G~~IEkH~ 243 (290)
-.|+..+..+++ .++||+.+..=.. +.-+..+.++ ||+|+++=+-+
T Consensus 176 --g~~~~~~~~i~~~~~ipvia~GGI~~----------------------~~d~~~~~~~~~~Gadgv~vG~al 225 (244)
T 1vzw_A 176 --GPNLELLKNVCAATDRPVVASGGVSS----------------------LDDLRAIAGLVPAGVEGAIVGKAL 225 (244)
T ss_dssp --CCCHHHHHHHHHTCSSCEEEESCCCS----------------------HHHHHHHHTTGGGTEEEEEECHHH
T ss_pred --CCCHHHHHHHHHhcCCCEEEECCCCC----------------------HHHHHHHHhhccCCCceeeeeHHH
Confidence 247888888888 7899988543321 2334456677 99999998765
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.046 Score=46.49 Aligned_cols=192 Identities=16% Similarity=0.127 Sum_probs=108.2
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH 95 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~ 95 (290)
+++.|..+- . . ...+.++++.+ .|+++|-+.... .+ .. ...+.++.+++.+...|++++..
T Consensus 16 ~l~~It~~~-~-~--~~~~~~~~~~~----~G~~~i~l~~~~----~~---~~--~~~~~~~~l~~~~~~~~v~v~v~-- 76 (215)
T 1xi3_A 16 KLYVITDRR-L-K--PEVESVREALE----GGATAIQMRIKN----AP---TR--EMYEIGKTLRQLTREYDALFFVD-- 76 (215)
T ss_dssp SEEEECCTT-T-S--CHHHHHHHHHH----TTCSEEEECCCS----CC---HH--HHHHHHHHHHHHHHHTTCEEEEE--
T ss_pred CEEEEECCc-h-h--hHHHHHHHHHH----CCCCEEEECCCC----CC---HH--HHHHHHHHHHHHHHHcCCeEEEc--
Confidence 467776542 1 1 34555665555 699988543211 01 10 01244566778888899988874
Q ss_pred CcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CC-CC
Q 022892 96 ETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT-MF-GY 172 (290)
Q Consensus 96 d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~~-~y 172 (290)
+.++.+.+ .+|.+.+++.+.. ...++.+. .++.+.++. . |++|+..+. ..|-+ .+++.... .. ..
T Consensus 77 --~~~~~a~~~gad~v~l~~~~~~-~~~~~~~~-~~~~~~v~~--~-t~~e~~~~~----~~g~d-~i~~~~~~~~~~~~ 144 (215)
T 1xi3_A 77 --DRVDVALAVDADGVQLGPEDMP-IEVAKEIA-PNLIIGASV--Y-SLEEALEAE----KKGAD-YLGAGSVFPTKTKE 144 (215)
T ss_dssp --SCHHHHHHHTCSEEEECTTSCC-HHHHHHHC-TTSEEEEEE--S-SHHHHHHHH----HHTCS-EEEEECSSCC----
T ss_pred --ChHHHHHHcCCCEEEECCccCC-HHHHHHhC-CCCEEEEec--C-CHHHHHHHH----hcCCC-EEEEcCCccCCCCC
Confidence 56676666 6999999987654 33444443 456666665 3 788866543 34654 44443211 00 01
Q ss_pred CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCC
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 251 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D 251 (290)
.....++..+..+++ .++||+...-=+ . .. ...+...||+|+++=+-+.-.+
T Consensus 145 ~~~~~~~~~l~~l~~~~~~pvia~GGI~-------------------~---~n-v~~~~~~Ga~gv~vgs~i~~~~---- 197 (215)
T 1xi3_A 145 DARVIGLEGLRKIVESVKIPVVAIGGIN-------------------K---DN-AREVLKTGVDGIAVISAVMGAE---- 197 (215)
T ss_dssp CCCCCHHHHHHHHHHHCSSCEEEESSCC-------------------T---TT-HHHHHTTTCSEEEESHHHHTSS----
T ss_pred CCCCcCHHHHHHHHHhCCCCEEEECCcC-------------------H---HH-HHHHHHcCCCEEEEhHHHhCCC----
Confidence 112356677777777 789998732111 0 11 2234668999999877663211
Q ss_pred CCCCCCh-HHHHHHHHHHHH
Q 022892 252 GPTQWPL-RNLEELLEELVA 270 (290)
Q Consensus 252 ~~~sl~p-~~l~~lv~~ir~ 270 (290)
+| +.+++|++.++.
T Consensus 198 -----d~~~~~~~~~~~~~~ 212 (215)
T 1xi3_A 198 -----DVRKATEELRKIVEE 212 (215)
T ss_dssp -----SHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHhh
Confidence 35 356666665554
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.012 Score=51.84 Aligned_cols=173 Identities=17% Similarity=0.158 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe--ecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD--VHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~ 107 (290)
...++|+.+.+ +|++.+-...... .+. +....++.+++++++.++|+... +.++++++.+.+ .+
T Consensus 31 d~~~~a~~~~~----~Gad~i~v~d~~~-------~~~--~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Ga 97 (253)
T 1thf_D 31 DPVELGKFYSE----IGIDELVFLDITA-------SVE--KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGA 97 (253)
T ss_dssp CHHHHHHHHHH----TTCCEEEEEESSC-------SSS--HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTC
T ss_pred CHHHHHHHHHH----cCCCEEEEECCch-------hhc--CCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 34677766654 6999875542211 111 12356778889999999999984 556677777666 69
Q ss_pred ceecccCCccCCHHHHHHHH-hcCC---eEEEeCC------------C----CCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 022892 108 DIIQIPAFLCRQTDLLVAAA-KTGK---IINIKKG------------Q----FCASSVMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a-~~~~---PVilstG------------~----~~tl~e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
|.+-+|+..+.+..++.++. ..+. -+.++.. - ..+..|+.. .+...|-.. ++++..
T Consensus 98 d~V~lg~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~---~~~~~G~~~-i~~~~~ 173 (253)
T 1thf_D 98 DKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVV---EVEKRGAGE-ILLTSI 173 (253)
T ss_dssp SEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHH---HHHHTTCSE-EEEEET
T ss_pred CEEEEChHHHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHH---HHHHCCCCE-EEEEec
Confidence 99999999998877665543 3331 2344431 0 013334322 233456544 444543
Q ss_pred CCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 168 TMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 168 s~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..-+. ..-.|+..+..+++ .++||+.+..-+. +.-+..+...||+|+++=+-+
T Consensus 174 ~~~g~-~~g~~~~~~~~l~~~~~ipvia~GGI~~----------------------~~d~~~~~~~Gadgv~vGsal 227 (253)
T 1thf_D 174 DRDGT-KSGYDTEMIRFVRPLTTLPIIASGGAGK----------------------MEHFLEAFLAGADAALAASVF 227 (253)
T ss_dssp TTTTS-CSCCCHHHHHHHGGGCCSCEEEESCCCS----------------------HHHHHHHHHTTCSEEEESHHH
T ss_pred cCCCC-CCCCCHHHHHHHHHhcCCCEEEECCCCC----------------------HHHHHHHHHcCChHHHHHHHH
Confidence 32111 12247788888887 7899988533221 222334457899999998765
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.016 Score=51.75 Aligned_cols=161 Identities=14% Similarity=0.114 Sum_probs=107.0
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEE-EeecCcccHHHHh
Q 022892 27 ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIV-TDVHETVQCEEVG 104 (290)
Q Consensus 27 en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~-s~~~d~~~~~~l~ 104 (290)
++.+...++|+.|++ .|+.+|-.. ++ . ..+++.++++++++ ++.+- -|+++.++++.+.
T Consensus 43 ~~~~~a~~~a~al~~----gGi~~iEvt-~~-----------t---~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai 103 (232)
T 4e38_A 43 DNAEDIIPLGKVLAE----NGLPAAEIT-FR-----------S---DAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAK 103 (232)
T ss_dssp SSGGGHHHHHHHHHH----TTCCEEEEE-TT-----------S---TTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----CCCCEEEEe-CC-----------C---CCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHH
Confidence 355677888888887 589877552 21 1 23455555566655 33333 3899999999988
Q ss_pred h-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC-CchhH
Q 022892 105 K-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV-DPRNL 182 (290)
Q Consensus 105 ~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~-dL~~i 182 (290)
+ .++++-.|. .+.++++++-+.+.|++- |.+ |++|+..|.+ .|-+-+-+ | |...+ .+..+
T Consensus 104 ~AGA~fIvsP~---~~~~vi~~~~~~gi~~ip--Gv~-TptEi~~A~~----~Gad~vK~------F--Pa~~~gG~~~l 165 (232)
T 4e38_A 104 EAGATFVVSPG---FNPNTVRACQEIGIDIVP--GVN-NPSTVEAALE----MGLTTLKF------F--PAEASGGISMV 165 (232)
T ss_dssp HHTCSEEECSS---CCHHHHHHHHHHTCEEEC--EEC-SHHHHHHHHH----TTCCEEEE------C--STTTTTHHHHH
T ss_pred HcCCCEEEeCC---CCHHHHHHHHHcCCCEEc--CCC-CHHHHHHHHH----cCCCEEEE------C--cCccccCHHHH
Confidence 7 799998776 578888988888999987 666 9999999854 57655544 3 33323 35667
Q ss_pred HHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 183 EWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 183 ~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
..++. + ++|++- +=++ . +.-+....++|+.++++=+-+++..
T Consensus 166 kal~~p~p~ip~~p--tGGI-------------~--------~~n~~~~l~aGa~~~vgGs~l~~~~ 209 (232)
T 4e38_A 166 KSLVGPYGDIRLMP--TGGI-------------T--------PSNIDNYLAIPQVLACGGTWMVDKK 209 (232)
T ss_dssp HHHHTTCTTCEEEE--BSSC-------------C--------TTTHHHHHTSTTBCCEEECGGGCHH
T ss_pred HHHHHHhcCCCeee--EcCC-------------C--------HHHHHHHHHCCCeEEEECchhcChH
Confidence 77776 5 577753 2221 1 1124456788888888877776543
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0045 Score=54.25 Aligned_cols=170 Identities=12% Similarity=0.062 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
..+.|+.+.+ .|++.+-....+. .|.+.. .. ..++++++..++|+.. -+.++++++.+.+ .+|
T Consensus 33 ~~~~a~~~~~----~Gad~i~v~~~d~-------~~~~~~--~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad 98 (244)
T 2y88_A 33 AVDAALGWQR----DGAEWIHLVDLDA-------AFGRGS--NH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCA 98 (244)
T ss_dssp HHHHHHHHHH----TTCSEEEEEEHHH-------HTTSCC--CH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred HHHHHHHHHH----cCCCEEEEEcCcc-------cccCCC--hH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCC
Confidence 4667776655 6999877654331 122111 22 7788888899999987 3566677877766 699
Q ss_pred eecccCCccCCHHHHHHHHh-cCC--eEEEeCC------------CC---CCHHHHHHHHHHHHHcCCCcEEEEeecCC-
Q 022892 109 IIQIPAFLCRQTDLLVAAAK-TGK--IINIKKG------------QF---CASSVMVNSAEKVRLAGNPNVMVCERGTM- 169 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~-~~~--PVilstG------------~~---~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~- 169 (290)
.+-+|+..+.|.+++.++.+ .+. -+.++.. -. .+..|+ ++.+...|-..+. ++..+.
T Consensus 99 ~V~lg~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~---~~~~~~~G~~~i~-~~~~~~~ 174 (244)
T 2y88_A 99 RVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDV---LERLDSEGCSRFV-VTDITKD 174 (244)
T ss_dssp EEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHH---HHHHHHTTCCCEE-EEETTTT
T ss_pred EEEECchHhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHH---HHHHHhCCCCEEE-EEecCCc
Confidence 99999999998877766533 222 1222211 00 022333 2334445665554 444332
Q ss_pred CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc---CCCEEEEeeeC
Q 022892 170 FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV---GVDGVFMEVHD 243 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~---GA~G~~IEkH~ 243 (290)
..+. -.|+..+..+++ .++||+.+..=.. +.-+..+..+ ||+|+++=+-+
T Consensus 175 ~~~~--g~~~~~~~~l~~~~~ipvia~GGI~~----------------------~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 175 GTLG--GPNLDLLAGVADRTDAPVIASGGVSS----------------------LDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp TTTS--CCCHHHHHHHHTTCSSCEEEESCCCS----------------------HHHHHHHHTTGGGTEEEEEECHHH
T ss_pred cccC--CCCHHHHHHHHHhCCCCEEEECCCCC----------------------HHHHHHHHhhccCCCCEEEEcHHH
Confidence 2232 247888888887 7899988543321 2334445666 99999998755
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.066 Score=48.74 Aligned_cols=177 Identities=12% Similarity=-0.010 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhc--CCcEEEeecCcccHHH------Hhh-hcc-eecccC--------Ccc-CCH----HHHHHHHh-c
Q 022892 74 EGLKILEKVKIAY--DIPIVTDVHETVQCEE------VGK-VAD-IIQIPA--------FLC-RQT----DLLVAAAK-T 129 (290)
Q Consensus 74 ~~l~~L~~~~~~~--Gi~~~s~~~d~~~~~~------l~~-~~d-~~kIgs--------~~~-~n~----~lL~~~a~-~ 129 (290)
..++.+.+..+.. +.|++..++....-++ +.+ .+| ++-|.- +.. .+. ++++++-+ .
T Consensus 78 ~~~~~~~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~ 157 (311)
T 1jub_A 78 YYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF 157 (311)
T ss_dssp HHHHHHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc
Confidence 3345555554456 8898888875332222 222 257 666621 111 233 44555543 4
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec-----CC-------------C-CCCC---CCCCchhHHHHHh
Q 022892 130 GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG-----TM-------------F-GYND---LIVDPRNLEWMRE 187 (290)
Q Consensus 130 ~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g-----s~-------------~-~y~~---~~~dL~~i~~lk~ 187 (290)
++||++|.....+.+++.+.++.+.+.|-+-|++..++ .. + +|.. ....+..+..+++
T Consensus 158 ~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~ 237 (311)
T 1jub_A 158 TKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYT 237 (311)
T ss_dssp CSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHH
Confidence 78999998877688898888888888886555443322 00 0 0000 0123566777777
Q ss_pred -c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHH
Q 022892 188 -A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEEL 264 (290)
Q Consensus 188 -~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~l 264 (290)
. ++||+....=. . ..-+..++++||++++|=+-+-- -+|.-++++
T Consensus 238 ~~~~~ipvi~~GGI~-----------------~-----~~da~~~l~~GAd~V~vg~~~l~----------~~p~~~~~i 285 (311)
T 1jub_A 238 RLKPEIQIIGTGGIE-----------------T-----GQDAFEHLLCGATMLQIGTALHK----------EGPAIFDRI 285 (311)
T ss_dssp TSCTTSEEEEESSCC-----------------S-----HHHHHHHHHHTCSEEEECHHHHH----------HCTHHHHHH
T ss_pred hcCCCCCEEEECCCC-----------------C-----HHHHHHHHHcCCCEEEEchHHHh----------cCcHHHHHH
Confidence 6 79998743221 1 33455667889999988766511 135677888
Q ss_pred HHHHHHHHHHhCCccccc
Q 022892 265 LEELVAIAKVSKGKQRMN 282 (290)
Q Consensus 265 v~~ir~~~~~lg~~~~~~ 282 (290)
.+.++..-...|-+++-+
T Consensus 286 ~~~l~~~l~~~g~~si~e 303 (311)
T 1jub_A 286 IKELEEIMNQKGYQSIAD 303 (311)
T ss_dssp HHHHHHHHHHHTCCSGGG
T ss_pred HHHHHHHHHHcCCCCHHH
Confidence 888777666666655433
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.1 Score=46.07 Aligned_cols=163 Identities=17% Similarity=0.132 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe---------ec-Cc-
Q 022892 29 EEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD---------VH-ET- 97 (290)
Q Consensus 29 ~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~---------~~-d~- 97 (290)
.....++|+... +.|+.++.-. +.+.+++.++..++|++-- ++ ++
T Consensus 35 ~~~~~~~A~a~~----~~Ga~~i~~~--------------------~~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~ 90 (232)
T 3igs_A 35 PEIVAAMALAAE----QAGAVAVRIE--------------------GIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPF 90 (232)
T ss_dssp HHHHHHHHHHHH----HTTCSEEEEE--------------------SHHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCS
T ss_pred cchHHHHHHHHH----HCCCeEEEEC--------------------CHHHHHHHHHhcCCCEEEEEeecCCCcceEeCcc
Confidence 444455555544 4698887642 2456777888889998731 11 12
Q ss_pred -ccHHHHhh-hcceecccCCcc----CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 022892 98 -VQCEEVGK-VADIIQIPAFLC----RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG 171 (290)
Q Consensus 98 -~~~~~l~~-~~d~~kIgs~~~----~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~ 171 (290)
++++.+.+ .+|++-+.+... +-.++++.+.+.+++++.+.. |.+|.+.|. ..|-+-|.+..+|....
T Consensus 91 ~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~---t~eea~~a~----~~Gad~Ig~~~~g~t~~ 163 (232)
T 3igs_A 91 LDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCS---SVDDGLACQ----RLGADIIGTTMSGYTTP 163 (232)
T ss_dssp HHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECC---SHHHHHHHH----HTTCSEEECTTTTSSSS
T ss_pred HHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCC---CHHHHHHHH----hCCCCEEEEcCccCCCC
Confidence 24555555 699988877643 234677888888999998753 888887764 35655443223332100
Q ss_pred CCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 172 YNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
-.....|+..+..+++.++||+..+.=. . +.-...+.++||+|+++=+.++
T Consensus 164 ~~~~~~~~~~i~~l~~~~ipvIA~GGI~-----------------t-----~~d~~~~~~~GadgV~VGsal~ 214 (232)
T 3igs_A 164 DTPEEPDLPLVKALHDAGCRVIAEGRYN-----------------S-----PALAAEAIRYGAWAVTVGSAIT 214 (232)
T ss_dssp SCCSSCCHHHHHHHHHTTCCEEEESCCC-----------------S-----HHHHHHHHHTTCSEEEECHHHH
T ss_pred CCCCCCCHHHHHHHHhcCCcEEEECCCC-----------------C-----HHHHHHHHHcCCCEEEEehHhc
Confidence 0112357777777766689998743211 1 3344566788999999988774
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.025 Score=48.75 Aligned_cols=163 Identities=15% Similarity=0.087 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec------------
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH------------ 95 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~------------ 95 (290)
+.....++|+++.+ .|++.+... +.+.++++++..++|++....
T Consensus 21 ~~~~~~~~a~~~~~----~Ga~~i~~~--------------------~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~ 76 (223)
T 1y0e_A 21 SSFIMSKMALAAYE----GGAVGIRAN--------------------TKEDILAIKETVDLPVIGIVKRDYDHSDVFITA 76 (223)
T ss_dssp CHHHHHHHHHHHHH----HTCSEEEEE--------------------SHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSC
T ss_pred CCccHHHHHHHHHH----CCCeeeccC--------------------CHHHHHHHHHhcCCCEEeeeccCCCccccccCC
Confidence 34455666666655 599887431 234466666778999863211
Q ss_pred CcccHHHHhh-hcceecccCCccCC-----HHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 022892 96 ETVQCEEVGK-VADIIQIPAFLCRQ-----TDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 96 d~~~~~~l~~-~~d~~kIgs~~~~n-----~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
+.+.++.+.+ .+|++.+++....+ .++++++.+. +++++++. . |++|+..+ ...|-.-+.+...|
T Consensus 77 ~~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~--~-t~~e~~~~----~~~G~d~i~~~~~g 149 (223)
T 1y0e_A 77 TSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADI--A-TVEEAKNA----ARLGFDYIGTTLHG 149 (223)
T ss_dssp SHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEEC--S-SHHHHHHH----HHTTCSEEECTTTT
T ss_pred cHHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecC--C-CHHHHHHH----HHcCCCEEEeCCCc
Confidence 1234555544 68999888876543 4778888777 88998754 3 78886654 44666444332322
Q ss_pred CC---CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 168 TM---FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 168 s~---~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.. ++......++..+..+++ .++||+.+..=. . ..-+..+.++||+|+++=+-+
T Consensus 150 ~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~-----------------~-----~~~~~~~~~~Gad~v~vG~al 207 (223)
T 1y0e_A 150 YTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVI-----------------T-----PDMYKRVMDLGVHCSVVGGAI 207 (223)
T ss_dssp SSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCC-----------------S-----HHHHHHHHHTTCSEEEECHHH
T ss_pred CcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCC-----------------C-----HHHHHHHHHcCCCEEEEChHH
Confidence 11 111001234556666776 789998854331 1 344556678899999987654
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.084 Score=48.81 Aligned_cols=185 Identities=15% Similarity=0.058 Sum_probs=103.4
Q ss_pred hhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCC-CEEeccccccCCCCCcccCCCCChhHH-HHHHHHH
Q 022892 5 TALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGL-PLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKV 82 (290)
Q Consensus 5 ~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~-~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~ 82 (290)
|.+-..++-..| ++.|+...+-+ .+++ ..+.++|. ..+...... .+. .++++++
T Consensus 3 t~~~~~l~~~~P-ii~apM~g~s~----~~la----~av~~aG~lG~i~~~~~~---------------~~~~~~~i~~i 58 (332)
T 2z6i_A 3 TRITELLKIDYP-IFQGGMAWVAD----GDLA----GAVSKAGGLGIIGGGNAP---------------KEVVKANIDKI 58 (332)
T ss_dssp CHHHHHHTCSSS-EEECCCTTTCC----HHHH----HHHHHHTSBEEEECTTCC---------------HHHHHHHHHHH
T ss_pred ChhhHHhCCCCC-EEeCCCCCCCc----HHHH----HHHHhCCCcEEeCCCCCC---------------HHHHHHHHHHH
Confidence 455555555555 66776665433 2333 33445685 444322111 122 2334444
Q ss_pred HHhcCCcEEEeecC--c---ccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 83 KIAYDIPIVTDVHE--T---VQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 83 ~~~~Gi~~~s~~~d--~---~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.+..+.|+..-++- + +.++.+.+ .+|++.++...- .++++++-+.+.||+++- . +++++..+ ...
T Consensus 59 ~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~~~g~p--~~~i~~l~~~g~~v~~~v--~-~~~~a~~~----~~~ 129 (332)
T 2z6i_A 59 KSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTGAGNP--SKYMERFHEAGIIVIPVV--P-SVALAKRM----EKI 129 (332)
T ss_dssp HHHCCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEECSSCG--GGTHHHHHHTTCEEEEEE--S-SHHHHHHH----HHT
T ss_pred HHhcCCCEEEEecCCCCCHHHHHHHHHHCCCCEEEECCCCh--HHHHHHHHHcCCeEEEEe--C-CHHHHHHH----HHc
Confidence 44456777776664 2 33444444 699999988642 345666766799999886 3 67765544 345
Q ss_pred CCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 157 GNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 157 Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
|-+-|+ ++....-++.....++..++.+++ .++||+....=. . +.-+.+++++||+
T Consensus 130 GaD~i~-v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~-----------------~-----~~~~~~al~~GAd 186 (332)
T 2z6i_A 130 GADAVI-AEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIA-----------------D-----GEGAAAGFMLGAE 186 (332)
T ss_dssp TCSCEE-EECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCC-----------------S-----HHHHHHHHHTTCS
T ss_pred CCCEEE-EECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCC-----------------C-----HHHHHHHHHcCCC
Confidence 654444 442111111112245667777777 789998742211 1 2345567789999
Q ss_pred EEEEeeeCCC
Q 022892 236 GVFMEVHDDP 245 (290)
Q Consensus 236 G~~IEkH~t~ 245 (290)
|+++=+-|--
T Consensus 187 gV~vGs~~l~ 196 (332)
T 2z6i_A 187 AVQVGTRFVV 196 (332)
T ss_dssp EEEECHHHHT
T ss_pred EEEecHHHhc
Confidence 9998776533
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.034 Score=50.72 Aligned_cols=182 Identities=18% Similarity=0.101 Sum_probs=118.6
Q ss_pred CCCeEEEEccCC-------ccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc
Q 022892 14 AEPFFLLAGPNV-------IESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY 86 (290)
Q Consensus 14 ~~~~~iIAgpcs-------ien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~ 86 (290)
.+++-||||.-- |-..-...++|+...+ .|+.++.--+ -+..|+| .+..|+++++..
T Consensus 56 ~~~~~vIaE~KraSPSkG~i~~~~dp~~~A~~y~~----~GA~~IsVlt-------d~~~f~G-----s~~~L~~ir~~v 119 (272)
T 3tsm_A 56 AGQFALIAEIKKASPSKGLIRPDFDPPALAKAYEE----GGAACLSVLT-------DTPSFQG-----APEFLTAARQAC 119 (272)
T ss_dssp TTCCEEEEEECSEETTTEESCSSCCHHHHHHHHHH----TTCSEEEEEC-------CSTTTCC-----CHHHHHHHHHTS
T ss_pred cCCceEEEEeccCCCCCCccCCCCCHHHHHHHHHH----CCCCEEEEec-------cccccCC-----CHHHHHHHHHhc
Confidence 356799997532 2111134677777665 6999885432 2222432 456777778889
Q ss_pred CCcEEEee--cCcccHHHHhh-hcceecccCCccCCH---HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCc
Q 022892 87 DIPIVTDV--HETVQCEEVGK-VADIIQIPAFLCRQT---DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 87 Gi~~~s~~--~d~~~~~~l~~-~~d~~kIgs~~~~n~---~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~ 160 (290)
++|++.-= .|+.++..+.. .+|.+-+....+.+. .|++.+-.+|+-+++... |.+|++.|.+ .|.+-
T Consensus 120 ~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh---~~eEl~~A~~----~ga~i 192 (272)
T 3tsm_A 120 SLPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVH---DEAEMERALK----LSSRL 192 (272)
T ss_dssp SSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEEC---SHHHHHHHTT----SCCSE
T ss_pred CCCEEECCccCCHHHHHHHHHcCCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHh----cCCCE
Confidence 99998744 56777777766 699998888887654 355556678999999885 8999988753 45543
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
|-+-.| ++....+|+.....|.+ . ++||+.- +.- .. +.-+..+..+||+|+
T Consensus 193 IGinnr----~l~t~~~dl~~~~~L~~~ip~~~~vIae-sGI----------------~t-----~edv~~l~~~Ga~gv 246 (272)
T 3tsm_A 193 LGVNNR----NLRSFEVNLAVSERLAKMAPSDRLLVGE-SGI----------------FT-----HEDCLRLEKSGIGTF 246 (272)
T ss_dssp EEEECB----CTTTCCBCTHHHHHHHHHSCTTSEEEEE-SSC----------------CS-----HHHHHHHHTTTCCEE
T ss_pred EEECCC----CCccCCCChHHHHHHHHhCCCCCcEEEE-CCC----------------CC-----HHHHHHHHHcCCCEE
Confidence 333333 34445678877777765 3 5777652 211 01 444556688999999
Q ss_pred EEeeeCC
Q 022892 238 FMEVHDD 244 (290)
Q Consensus 238 ~IEkH~t 244 (290)
+|=..++
T Consensus 247 LVG~alm 253 (272)
T 3tsm_A 247 LIGESLM 253 (272)
T ss_dssp EECHHHH
T ss_pred EEcHHHc
Confidence 9988774
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=96.89 E-value=0.14 Score=47.27 Aligned_cols=172 Identities=16% Similarity=0.138 Sum_probs=104.3
Q ss_pred CCeEEEEccCCcc----------CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH----HHH
Q 022892 15 EPFFLLAGPNVIE----------SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK----ILE 80 (290)
Q Consensus 15 ~~~~iIAgpcsie----------n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~----~L~ 80 (290)
.++.|+...+.-- +.+..++.|+++++ .||++|--.... |.|+. .....++.++ .++
T Consensus 38 ~~~~iMgilNvTPDSFsdgg~~~~~~~a~~~a~~~v~----~GAdiIDIGgeS----trPga-~~v~~~eE~~RvvpvI~ 108 (297)
T 1tx2_A 38 EKTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRD----EGAHIIDIGGES----TRPGF-AKVSVEEEIKRVVPMIQ 108 (297)
T ss_dssp SSCEEEEECCCCCCTTCSSCBHHHHHHHHHHHHHHHH----TTCSEEEEESCC--------C-CCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCCCccccCCccCCHHHHHHHHHHHHH----cCCCEEEECCCc----CCCCC-CCCCHHHHHHHHHHHHH
Confidence 4667877766521 24556666666665 699998776433 22331 1111234443 345
Q ss_pred HHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeC--CCCCC--------HHHHHHH
Q 022892 81 KVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKK--GQFCA--------SSVMVNS 149 (290)
Q Consensus 81 ~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilst--G~~~t--------l~e~~~A 149 (290)
.+.++.++|+..+-++++.++...+ ..+++-=-+.......+++.+++.+.||++.. |+. . .+.+...
T Consensus 109 ~l~~~~~vpiSIDT~~~~V~~aAl~aGa~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p-~y~d~v~ev~~~l~~~ 187 (297)
T 1tx2_A 109 AVSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNM-NYRNLMADMIADLYDS 187 (297)
T ss_dssp HHHHHSCSCEEEECSCHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCC-CCSSHHHHHHHHHHHH
T ss_pred HHHhcCCceEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCC-CcchHHHHHHHHHHHH
Confidence 5556679999999999999988766 57766322222224577888999999999966 433 2 3556666
Q ss_pred HHHHHHcCCC-cEEEEeecCCCCCCCCCCCchhHHHH---HhcCCCEEEeCC
Q 022892 150 AEKVRLAGNP-NVMVCERGTMFGYNDLIVDPRNLEWM---REANCPVVADVT 197 (290)
Q Consensus 150 ve~i~~~Gn~-~i~L~~~gs~~~y~~~~~dL~~i~~l---k~~~~pV~~D~s 197 (290)
++.+.+.|-+ +=+++..|..|+... .-|+..+..+ +++++||.+-.|
T Consensus 188 i~~a~~~GI~~~~IilDPg~Gfgk~~-~~n~~ll~~l~~l~~lg~Pvl~G~S 238 (297)
T 1tx2_A 188 IKIAKDAGVRDENIILDPGIGFAKTP-EQNLEAMRNLEQLNVLGYPVLLGTS 238 (297)
T ss_dssp HHHHHHTTCCGGGEEEECCTTSSCCH-HHHHHHHHTGGGGGGGCSCBEEECT
T ss_pred HHHHHHcCCChhcEEEeCCCCcCCCH-HHHHHHHHHHHHHHhCCCCEEEEec
Confidence 7778888865 236677887554322 1233333333 346899877444
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.061 Score=47.56 Aligned_cols=162 Identities=20% Similarity=0.185 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE---e------ec-Cc-
Q 022892 29 EEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT---D------VH-ET- 97 (290)
Q Consensus 29 ~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s---~------~~-d~- 97 (290)
.....++|+. +++.|+.++.-. +.+.+++.++..++|++. . +| ++
T Consensus 35 ~~~~~~~A~a----~~~~Ga~~i~~~--------------------~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~ 90 (229)
T 3q58_A 35 PEIVAAMAQA----AASAGAVAVRIE--------------------GIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPY 90 (229)
T ss_dssp HHHHHHHHHH----HHHTTCSEEEEE--------------------SHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCS
T ss_pred cchHHHHHHH----HHHCCCcEEEEC--------------------CHHHHHHHHHhcCCCEEEEEeecCCCCceEeCcc
Confidence 4444444444 444788887642 245677777888999872 2 11 12
Q ss_pred -ccHHHHhh-hcceecccCCcc----CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-C
Q 022892 98 -VQCEEVGK-VADIIQIPAFLC----RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-F 170 (290)
Q Consensus 98 -~~~~~l~~-~~d~~kIgs~~~----~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~ 170 (290)
++++.+.+ .+|++-+.+... +-.++++++.+.+++++.... |.+|.+.|. +.|-+-|.+..+|.. .
T Consensus 91 ~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~---t~eea~~a~----~~Gad~Ig~~~~g~t~~ 163 (229)
T 3q58_A 91 LQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCS---TVNEGISCH----QKGIEFIGTTLSGYTGP 163 (229)
T ss_dssp HHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECS---SHHHHHHHH----HTTCSEEECTTTTSSSS
T ss_pred HHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecC---CHHHHHHHH----hCCCCEEEecCccCCCC
Confidence 24555555 699888776543 234677888888999998753 888887764 356654432223321 0
Q ss_pred CCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 171 GYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 171 ~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.+ ....|+..+..+++.++||+..+.=. . +.-+..+.++||+|+++=+.++
T Consensus 164 ~~-~~~~~~~li~~l~~~~ipvIA~GGI~-----------------t-----~~d~~~~~~~GadgV~VGsai~ 214 (229)
T 3q58_A 164 IT-PVEPDLAMVTQLSHAGCRVIAEGRYN-----------------T-----PALAANAIEHGAWAVTVGSAIT 214 (229)
T ss_dssp CC-CSSCCHHHHHHHHTTTCCEEEESSCC-----------------S-----HHHHHHHHHTTCSEEEECHHHH
T ss_pred Cc-CCCCCHHHHHHHHHcCCCEEEECCCC-----------------C-----HHHHHHHHHcCCCEEEEchHhc
Confidence 11 12356777777765589998743211 1 3445567888999999987764
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.043 Score=48.58 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD--VHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d 108 (290)
..++|+++.+ .|++.+...... +. +.+.+ ..+..+++++++.++|++.. +.++++++.+.+ .+|
T Consensus 32 ~~~~a~~~~~----~Ga~~i~v~d~~---~~----~~~~g--~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad 98 (266)
T 2w6r_A 32 LRDWVVEVEK----RGAGEILLTSID---RD----GTKSG--YDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGAD 98 (266)
T ss_dssp HHHHHHHHHH----HTCSEEEEEETT---TS----SCSSC--CCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCS
T ss_pred HHHHHHHHHH----CCCCEEEEEecC---cc----cCCCc--ccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCc
Confidence 5677777766 599987763221 11 11112 23677888888899999984 345566776666 699
Q ss_pred eecccCCcc-C--CHHHHHHHHhc-C---CeEEEeCCC---C---------------CCHHHHHHHHHHHHHcCCCcEEE
Q 022892 109 IIQIPAFLC-R--QTDLLVAAAKT-G---KIINIKKGQ---F---------------CASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 109 ~~kIgs~~~-~--n~~lL~~~a~~-~---~PVilstG~---~---------------~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
.+-+|+..+ . +.+.++++.+. + ..++++-.. . .+..|+...+ ...|-..| +
T Consensus 99 ~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~---~~~G~~~i-~ 174 (266)
T 2w6r_A 99 KALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEV---EKRGAGEI-L 174 (266)
T ss_dssp EEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHH---HHTTCSEE-E
T ss_pred HhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHH---HHcCCCEE-E
Confidence 999999999 4 77777776432 3 133222211 0 1355553333 34565444 4
Q ss_pred EeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 164 CERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 164 ~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
++..+..+.. .-+|+..+..+++ .++||+... |.+. +.-+......||+|+++=+-
T Consensus 175 ~t~~~~~g~~-~g~~~~~i~~l~~~~~ipvia~G--------------------GI~~--~ed~~~~~~~Gadgv~vgsa 231 (266)
T 2w6r_A 175 LTSIDRDGTK-SGYDTEMIRFVRPLTTLPIIASG--------------------GAGK--MEHFLEAFLAGADAALAASV 231 (266)
T ss_dssp EEETTTTTTC-SCCCHHHHHHHGGGCCSCEEEES--------------------CCCS--HHHHHHHHHHTCSEEEESTT
T ss_pred EEeecCCCCc-CCCCHHHHHHHHHHcCCCEEEeC--------------------CCCC--HHHHHHHHHcCCHHHHccHH
Confidence 4543322211 1247788888888 789998732 2111 22233344679999999876
Q ss_pred C
Q 022892 243 D 243 (290)
Q Consensus 243 ~ 243 (290)
+
T Consensus 232 l 232 (266)
T 2w6r_A 232 F 232 (266)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.13 Score=46.71 Aligned_cols=216 Identities=13% Similarity=0.051 Sum_probs=126.5
Q ss_pred CCCeEEEEccCCcc-----------CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHH
Q 022892 14 AEPFFLLAGPNVIE-----------SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKV 82 (290)
Q Consensus 14 ~~~~~iIAgpcsie-----------n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~ 82 (290)
+.++.+|.|..-+- +.+..++.|+++++ .|++++=-..-.. -. -+++.-...++.+
T Consensus 7 ~~~~~iigEilN~Tpdsf~dg~~~~~~~~a~~~a~~~v~----~GAdiIDIg~~s~--------~~-eE~~rv~~vi~~l 73 (271)
T 2yci_X 7 SHMFIMIGERINGMFKDIREAILNKDPRPIQEWARRQAE----KGAHYLDVNTGPT--------AD-DPVRVMEWLVKTI 73 (271)
T ss_dssp CCCCEEEEEEEETTSHHHHHHHHTTCCHHHHHHHHHHHH----TTCSEEEEECCSC--------SS-CHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCChhhHHHhhhhCCHHHHHHHHHHHHH----CCCCEEEEcCCcC--------ch-hHHHHHHHHHHHH
Confidence 45677777765331 34566777777776 6999876543220 00 0111223334555
Q ss_pred HHhcCCcEEEeecCcccHHHHhhh---cceec-ccCCccCC-HHHHHHHHhcCCeEEEeC----CCCCC----HHHHHHH
Q 022892 83 KIAYDIPIVTDVHETVQCEEVGKV---ADIIQ-IPAFLCRQ-TDLLVAAAKTGKIINIKK----GQFCA----SSVMVNS 149 (290)
Q Consensus 83 ~~~~Gi~~~s~~~d~~~~~~l~~~---~d~~k-Igs~~~~n-~~lL~~~a~~~~PVilst----G~~~t----l~e~~~A 149 (290)
.+..++|+.-+-++++.++...+. .+++- |.+.. .+ ..++..+++.+.||++-. |+..| ++...+.
T Consensus 74 ~~~~~~pisIDT~~~~v~~aal~a~~Ga~iINdvs~~~-d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~ 152 (271)
T 2yci_X 74 QEVVDLPCCLDSTNPDAIEAGLKVHRGHAMINSTSADQ-WKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMEL 152 (271)
T ss_dssp HHHCCCCEEEECSCHHHHHHHHHHCCSCCEEEEECSCH-HHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHH
T ss_pred HHhCCCeEEEeCCCHHHHHHHHHhCCCCCEEEECCCCc-cccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHH
Confidence 566799999999999988876553 55554 44443 21 457788889999999854 45546 4555556
Q ss_pred HHHHHHcCCC-cEEEEeecCCC-CCCCCCCC---chhHHHHHhcC---CCEEEeCCCCCCCCCCCccCCCCccCCC--Cc
Q 022892 150 AEKVRLAGNP-NVMVCERGTMF-GYNDLIVD---PRNLEWMREAN---CPVVADVTHSLQQPAGKKLDGGGVASGG--LR 219 (290)
Q Consensus 150 ve~i~~~Gn~-~i~L~~~gs~~-~y~~~~~d---L~~i~~lk~~~---~pV~~D~sHs~~~~~~~~~~~~~~~~~g--~~ 219 (290)
++.+.+.|-+ +=+++..|..| ++.. .-| |+.+..+++.+ +|+.+-.|. .|.| .|
T Consensus 153 ~~~a~~~Gi~~~~IilDPg~gfigk~~-~~~~~~l~~l~~~~~~~~p~~p~l~G~Sn---------------ksfg~~~r 216 (271)
T 2yci_X 153 VANADAHGIPMTELYIDPLILPVNVAQ-EHAVEVLETIRQIKLMANPAPRTVLGLSN---------------VSQKCPDR 216 (271)
T ss_dssp HHHHHHTTCCGGGEEEECCCCCTTTST-HHHHHHHHHHHHHTTSSSSCCEEEEEGGG---------------GGTTCSSH
T ss_pred HHHHHHCCCCcccEEEecCCCccccCH-HHHHHHHHHHHHHHHhCCCCCCEEEeeCc---------------cccCCchH
Confidence 6777788854 35778888765 4433 234 34444445534 898763332 1223 23
Q ss_pred ccHHH-HHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 220 ELIPC-IARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 220 ~~~~~-~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
+.+.. .+..|++.|++..++ |+ | +. ++++.++..+..+|.
T Consensus 217 ~~l~~t~~~~a~~~g~~~~iv--~~--------~-------d~-~~~~~~~~~~al~~~ 257 (271)
T 2yci_X 217 PLINRTYLVMAMTAGLDAAIM--DV--------D-------DD-ALVDAAATAHILLNK 257 (271)
T ss_dssp HHHHHHHHHHHHHHTCCEEEE--CT--------T-------CH-HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhCCcEEE--CC--------C-------cH-HHHHHHHHHHHHhCC
Confidence 33332 344567889886666 54 1 12 566666666655443
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=96.78 E-value=0.28 Score=43.98 Aligned_cols=211 Identities=13% Similarity=0.075 Sum_probs=116.8
Q ss_pred CCchhhHHhhhcCCCCeEEEEc--cCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC-Ccc--------cCCC
Q 022892 1 MDPSTALFNQLKAAEPFFLLAG--PNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT-SSK--------SFRG 69 (290)
Q Consensus 1 ~~~~~~~~~~i~~~~~~~iIAg--pcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt-s~~--------~~~g 69 (290)
|+.-...|......++..+|.= +|.. +.+...+.++.|.+ .|+|++-.+....+|.- .+. .-.|
T Consensus 1 m~~~~~~f~~~~~~~~~~~i~~i~~gdp-~~~~~~~~~~~l~~----~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G 75 (268)
T 1qop_A 1 MERYENLFAQLNDRREGAFVPFVTLGDP-GIEQSLKIIDTLID----AGADALELGVPFSDPLADGPTIQNANLRAFAAG 75 (268)
T ss_dssp CCHHHHHHHHHHHTTCCEEEEEEETTSS-CHHHHHHHHHHHHH----TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHhcCCceEEEEeeCCCC-CHHHHHHHHHHHHH----CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcC
Confidence 3333456665543333233322 2222 55777888888877 69999888752222211 110 0123
Q ss_pred CChhHHHHHHHHHHHh-cCCcEEEee-cCc-------ccHHHHhh-hcceecccCCccC-CHHHHHHHHhcCCe-EEEeC
Q 022892 70 PGMVEGLKILEKVKIA-YDIPIVTDV-HET-------VQCEEVGK-VADIIQIPAFLCR-QTDLLVAAAKTGKI-INIKK 137 (290)
Q Consensus 70 ~~~~~~l~~L~~~~~~-~Gi~~~s~~-~d~-------~~~~~l~~-~~d~~kIgs~~~~-n~~lL~~~a~~~~P-Vilst 137 (290)
..+..+++.++++.+. ..+|+.--. +++ ..++.+.+ .+|.+-++.-... -..+++.+-+.+.. +.+-+
T Consensus 76 ~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~ 155 (268)
T 1qop_A 76 VTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICP 155 (268)
T ss_dssp CCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEEC
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEEC
Confidence 3334567788888888 789985532 332 33444444 5887777755543 34566667777765 55555
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCC--CCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCc
Q 022892 138 GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYND--LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGV 213 (290)
Q Consensus 138 G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~--~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~ 213 (290)
..+ +.+.+...++. +. ..+++-....+ +... ..-.+.-+..+|+ .++||.++.-=+
T Consensus 156 p~t-~~~~i~~i~~~----~~-g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~-------------- 215 (268)
T 1qop_A 156 PNA-DDDLLRQVASY----GR-GYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGIS-------------- 215 (268)
T ss_dssp TTC-CHHHHHHHHHH----CC-SCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCC--------------
T ss_pred CCC-CHHHHHHHHhh----CC-CcEEEEecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCC--------------
Confidence 545 66666655432 22 23333322111 2211 1112467778888 789998743211
Q ss_pred cCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 214 ASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 214 ~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
. +..+..++..||||+|+=+.++
T Consensus 216 ---t-----~e~~~~~~~agAD~vVVGSai~ 238 (268)
T 1qop_A 216 ---S-----PEQVSAAVRAGAAGAISGSAIV 238 (268)
T ss_dssp ---S-----HHHHHHHHHTTCSEEEECHHHH
T ss_pred ---C-----HHHHHHHHHcCCCEEEEChHHh
Confidence 1 4556667889999999988764
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.24 Score=45.69 Aligned_cols=187 Identities=15% Similarity=0.078 Sum_probs=105.6
Q ss_pred chhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHH-HHHHH
Q 022892 3 PSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGL-KILEK 81 (290)
Q Consensus 3 ~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l-~~L~~ 81 (290)
-.|.+-..++-..| +|.|+.+.+-+ .+ ++..+.++|...+....+ .. .+.+ +++++
T Consensus 15 ~~t~~~~~l~~~~P-ii~apM~gvs~----~~----la~av~~aGglG~i~~~~-------------~~-~~~l~~~i~~ 71 (326)
T 3bo9_A 15 VRTRVTDLLEIEHP-ILMGGMAWAGT----PT----LAAAVSEAGGLGIIGSGA-------------MK-PDDLRKAISE 71 (326)
T ss_dssp CCCHHHHHHTCSSS-EEECCCTTTSC----HH----HHHHHHHTTSBEEEECTT-------------CC-HHHHHHHHHH
T ss_pred ecchhHHhcCCCCC-EEECCCCCCCC----HH----HHHHHHhCCCcEEeCCCC-------------CC-HHHHHHHHHH
Confidence 35666666665555 66666655423 23 334444567543332111 11 2333 34444
Q ss_pred HHHhcCCcEEEeecC--c---ccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 82 VKIAYDIPIVTDVHE--T---VQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 82 ~~~~~Gi~~~s~~~d--~---~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
+.+..+.||..-.+- + +.++.+.+ .+|++.++..+- ..+++.+.+.+.||+.+- . +.++...+. .
T Consensus 72 i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~~g~p--~~~~~~l~~~g~~v~~~v--~-s~~~a~~a~----~ 142 (326)
T 3bo9_A 72 LRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGAGNP--TKYIRELKENGTKVIPVV--A-SDSLARMVE----R 142 (326)
T ss_dssp HHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEESSCC--HHHHHHHHHTTCEEEEEE--S-SHHHHHHHH----H
T ss_pred HHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEECCCCc--HHHHHHHHHcCCcEEEEc--C-CHHHHHHHH----H
Confidence 444445666665443 3 34455444 599999987753 567788888899999865 3 777766554 4
Q ss_pred cCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCC
Q 022892 156 AGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGV 234 (290)
Q Consensus 156 ~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA 234 (290)
.|-+- ++++....-++.-...++..++.+++ .++||+.+..=. . ..-...++++||
T Consensus 143 ~GaD~-i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~----------------~------~~dv~~al~~GA 199 (326)
T 3bo9_A 143 AGADA-VIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIA----------------D------GRGMAAAFALGA 199 (326)
T ss_dssp TTCSC-EEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCC----------------S------HHHHHHHHHHTC
T ss_pred cCCCE-EEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCC----------------C------HHHHHHHHHhCC
Confidence 56544 44543111011112246677777777 789998842211 1 222345677899
Q ss_pred CEEEEeeeCC
Q 022892 235 DGVFMEVHDD 244 (290)
Q Consensus 235 ~G~~IEkH~t 244 (290)
+|+++=+-|.
T Consensus 200 ~gV~vGs~~~ 209 (326)
T 3bo9_A 200 EAVQMGTRFV 209 (326)
T ss_dssp SEEEESHHHH
T ss_pred CEEEechHHH
Confidence 9999987653
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.012 Score=53.53 Aligned_cols=86 Identities=17% Similarity=0.121 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc----CCHHHHHHHHh-c--CCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC----RQTDLLVAAAK-T--GKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~----~n~~lL~~~a~-~--~~PVilstG~~~tl~ 144 (290)
.+.++.+.+.++++|+.++.++++++.++...+ .+|++.|..++. .++..++.+.+ . +.||+-.-|.. |.+
T Consensus 148 ~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~-t~e 226 (272)
T 3qja_A 148 QSVLVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVR-GTA 226 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCC-SHH
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHCCCCEEEECCCcccccccCHHHHHHHHHhCcccCEEEEECCCC-CHH
Confidence 356888999999999999999999999988766 699999998764 34555666654 3 68999999999 999
Q ss_pred HHHHHHHHHHHcCCCcEEE
Q 022892 145 VMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L 163 (290)
++... ...|-.-+++
T Consensus 227 dv~~l----~~~GadgvlV 241 (272)
T 3qja_A 227 DLLAY----AGAGADAVLV 241 (272)
T ss_dssp HHHHH----HHTTCSEEEE
T ss_pred HHHHH----HHcCCCEEEE
Confidence 98865 3456544444
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.021 Score=48.68 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=91.9
Q ss_pred HHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-eecCcccHHHHhh-hcceeccc
Q 022892 36 AKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-DVHETVQCEEVGK-VADIIQIP 113 (290)
Q Consensus 36 Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-~~~d~~~~~~l~~-~~d~~kIg 113 (290)
+.++.+...+.|++++-.. + ++ + +..+.++.+++... .++.+-. ++.++++++...+ .+|++ ++
T Consensus 24 ~~~~~~~~~~~G~~~iev~-~----~~-~------~~~~~i~~ir~~~~-~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~ 89 (205)
T 1wa3_A 24 AKEKALAVFEGGVHLIEIT-F----TV-P------DADTVIKELSFLKE-KGAIIGAGTVTSVEQCRKAVESGAEFI-VS 89 (205)
T ss_dssp HHHHHHHHHHTTCCEEEEE-T----TS-T------THHHHHHHTHHHHH-TTCEEEEESCCSHHHHHHHHHHTCSEE-EC
T ss_pred HHHHHHHHHHCCCCEEEEe-C----CC-h------hHHHHHHHHHHHCC-CCcEEEecccCCHHHHHHHHHcCCCEE-Ec
Confidence 4444444555799988542 1 11 1 11233444444432 1455544 7788888887766 69999 76
Q ss_pred CCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c-CCC
Q 022892 114 AFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCP 191 (290)
Q Consensus 114 s~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~p 191 (290)
... ...+++.+-+.++|++. |.. |.+|+..|.+ .|-+ ++-.+ +.....+..+..+++ + ++|
T Consensus 90 ~~~--~~~~~~~~~~~g~~vi~--g~~-t~~e~~~a~~----~Gad-~vk~~-------~~~~~g~~~~~~l~~~~~~~p 152 (205)
T 1wa3_A 90 PHL--DEEISQFCKEKGVFYMP--GVM-TPTELVKAMK----LGHT-ILKLF-------PGEVVGPQFVKAMKGPFPNVK 152 (205)
T ss_dssp SSC--CHHHHHHHHHHTCEEEC--EEC-SHHHHHHHHH----TTCC-EEEET-------THHHHHHHHHHHHHTTCTTCE
T ss_pred CCC--CHHHHHHHHHcCCcEEC--CcC-CHHHHHHHHH----cCCC-EEEEc-------CccccCHHHHHHHHHhCCCCc
Confidence 543 36788888889999987 555 8999887743 4654 32221 111123455666666 5 788
Q ss_pred EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 192 V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
|+.+.-=+ ..-......+||+|+++=+-+.
T Consensus 153 via~GGI~-----------------------~~~~~~~~~~Ga~~v~vGs~i~ 182 (205)
T 1wa3_A 153 FVPTGGVN-----------------------LDNVCEWFKAGVLAVGVGSALV 182 (205)
T ss_dssp EEEBSSCC-----------------------TTTHHHHHHHTCSCEEECHHHH
T ss_pred EEEcCCCC-----------------------HHHHHHHHHCCCCEEEECcccc
Confidence 87631111 1123456788999998877664
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.4 Score=43.97 Aligned_cols=114 Identities=11% Similarity=-0.004 Sum_probs=70.5
Q ss_pred ccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC-C-CC
Q 022892 98 VQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG-Y-ND 174 (290)
Q Consensus 98 ~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~-y-~~ 174 (290)
+.++.+.+ .+|++.++..+- .++++.+-+.+.||+.+. . +.++...+. ..|-+ .++++. ...+ + ..
T Consensus 87 ~~~~~~~~~g~d~V~~~~g~p--~~~~~~l~~~gi~vi~~v--~-t~~~a~~~~----~~GaD-~i~v~g-~~~GG~~G~ 155 (328)
T 2gjl_A 87 EYRAAIIEAGIRVVETAGNDP--GEHIAEFRRHGVKVIHKC--T-AVRHALKAE----RLGVD-AVSIDG-FECAGHPGE 155 (328)
T ss_dssp HHHHHHHHTTCCEEEEEESCC--HHHHHHHHHTTCEEEEEE--S-SHHHHHHHH----HTTCS-EEEEEC-TTCSBCCCS
T ss_pred HHHHHHHhcCCCEEEEcCCCc--HHHHHHHHHcCCCEEeeC--C-CHHHHHHHH----HcCCC-EEEEEC-CCCCcCCCC
Confidence 34555555 599999886642 577788877899999764 3 777766543 35654 444542 1111 1 11
Q ss_pred -CCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 175 -LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 175 -~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
...++..++.+++ .++||+.+..=. . ..-...++++||+|+++=+-|.
T Consensus 156 ~~~~~~~~l~~v~~~~~iPviaaGGI~-----------------~-----~~~v~~al~~GAdgV~vGs~~~ 205 (328)
T 2gjl_A 156 DDIPGLVLLPAAANRLRVPIIASGGFA-----------------D-----GRGLVAALALGADAINMGTRFL 205 (328)
T ss_dssp SCCCHHHHHHHHHTTCCSCEEEESSCC-----------------S-----HHHHHHHHHHTCSEEEESHHHH
T ss_pred ccccHHHHHHHHHHhcCCCEEEECCCC-----------------C-----HHHHHHHHHcCCCEEEECHHHH
Confidence 1245667777777 689998853321 1 2234456778999999987663
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.044 Score=53.44 Aligned_cols=151 Identities=13% Similarity=0.083 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccC----CHHHHHHHHh---cCCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCR----QTDLLVAAAK---TGKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~----n~~lL~~~a~---~~~PVilstG~~~tl~ 144 (290)
.+.++.|.++++++|+.++.|+++.++++...+ ..+++-|-.+++. ++.....+.. .+.+|+-..|.. |.+
T Consensus 143 ~~~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~lga~iIGinnr~L~t~~~dl~~~~~L~~~ip~~~~vIaEsGI~-t~e 221 (452)
T 1pii_A 143 DDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGIN-TYA 221 (452)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCCC-CHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHCCCCEEEEeCCCCCCCCCCHHHHHHHHHhCCCCCeEEEECCCC-CHH
Confidence 367999999999999999999999999998777 6999988888763 2333333322 267999999999 999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHH
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIP 223 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~ 223 (290)
++..+.+. -+-+| .|++. ..++ .. ..+..|....+.| |--+. +
T Consensus 222 dv~~~~~~------a~avL--VGealmr~~d--~~-~~~~~l~~~~~KI---CGit~----------------------~ 265 (452)
T 1pii_A 222 QVRELSHF------ANGFL--IGSALMAHDD--LH-AAVRRVLLGENKV---CGLTR----------------------G 265 (452)
T ss_dssp HHHHHTTT------CSEEE--ECHHHHTCSC--HH-HHHHHHHHCSCEE---CCCCS----------------------H
T ss_pred HHHHHHHh------CCEEE--EcHHHcCCcC--HH-HHHHHHHHHhccc---cCCCc----------------------H
Confidence 99887543 12344 34421 1111 11 3444444323445 33332 5
Q ss_pred HHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHH
Q 022892 224 CIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEE 267 (290)
Q Consensus 224 ~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ 267 (290)
.-+.+|+.+||| .+=.-|.+ ..+-..++++.+++++.
T Consensus 266 eda~~a~~~Gad--~iGfIf~~-----~SpR~V~~~~a~~i~~~ 302 (452)
T 1pii_A 266 QDAKAAYDAGAI--YGGLIFVA-----TSPRCVNVEQAQEVMAA 302 (452)
T ss_dssp HHHHHHHHHTCS--EEEEECCT-----TCTTBCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCC--EEEeecCC-----CCCCCCCHHHHHHHHhc
Confidence 667888999998 56555533 33345677777777543
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.056 Score=51.23 Aligned_cols=227 Identities=19% Similarity=0.206 Sum_probs=118.4
Q ss_pred CchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccc---cccCCCCCcccCCCCChhHHHHH
Q 022892 2 DPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSS---FDKANRTSSKSFRGPGMVEGLKI 78 (290)
Q Consensus 2 ~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~---~~k~~rts~~~~~g~~~~~~l~~ 78 (290)
|-||.++ ......| ++|+-... ..+...++-+.|.+.|+++|+..+.-.. .+. | . ..+.++.
T Consensus 48 d~st~~~-g~~l~~P-v~ia~MtG--gt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~-~----~------~~~s~~~ 112 (368)
T 3vkj_A 48 NTKTKFF-RKEISVP-VMVTGMTG--GRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEK-A----E------ARESFAI 112 (368)
T ss_dssp BCCEEET-TEEESSS-EEECCCCC--SSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHC-G----G------GSHHHHH
T ss_pred cceeEEC-CEeccCC-eEEecCCC--CCchhhHHHHHHHHHHHHhCCCeeeecchhccCC-H----H------HHhhHHH
Confidence 4455555 3333444 67776644 3455678899999999999987653321 110 1 0 1122222
Q ss_pred HHHHHHhcCCcEEEee--------cCcccHHHHhh--hcceecc------------cCCccC--CHHHHHHHHh-cCCeE
Q 022892 79 LEKVKIAYDIPIVTDV--------HETVQCEEVGK--VADIIQI------------PAFLCR--QTDLLVAAAK-TGKII 133 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~--------~d~~~~~~l~~--~~d~~kI------------gs~~~~--n~~lL~~~a~-~~~PV 133 (290)
+++.+ -+++++..+ ++++.+..+.+ ..+.+.| |..+.+ +.+.++++.+ +++||
T Consensus 113 vr~~a--p~~~~~anlg~~ql~~~~~~~~~~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPV 190 (368)
T 3vkj_A 113 VRKVA--PTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPI 190 (368)
T ss_dssp HHHHC--SSSCEEEEEEGGGGGTTCCHHHHHHHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCE
T ss_pred HHHhC--cCcceecCcCeeecCCCCCHHHHHHHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCE
Confidence 33221 233333321 22222222211 1222222 233333 6778888654 69999
Q ss_pred EEe-CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-C-----------------------CCCCCCCCchhHHHHHh-
Q 022892 134 NIK-KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-F-----------------------GYNDLIVDPRNLEWMRE- 187 (290)
Q Consensus 134 ils-tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~-----------------------~y~~~~~dL~~i~~lk~- 187 (290)
++| .|...+.++.+.+ ...|-+-|.+--+|.. + ++.. --..++...++
T Consensus 191 ivK~vG~g~s~~~A~~l----~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~--pt~~~l~~v~~~ 264 (368)
T 3vkj_A 191 IVKESGNGISMETAKLL----YSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGV--PTAASIMEVRYS 264 (368)
T ss_dssp EEECSSSCCCHHHHHHH----HHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSC--BHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHH----HhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccccc--cHHHHHHHHHHH
Confidence 999 5655577665544 4567665555333331 0 0000 01134555555
Q ss_pred c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChH----HHH
Q 022892 188 A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLR----NLE 262 (290)
Q Consensus 188 ~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~----~l~ 262 (290)
. ++||+.|..-.. | .. +..|+++||++++|=..+-.- +.. .++ .++
T Consensus 265 ~~~ipvia~GGI~~----------------~-----~d-~~kal~lGA~~v~ig~~~l~~--~~~-----G~~~v~~~l~ 315 (368)
T 3vkj_A 265 VPDSFLVGSGGIRS----------------G-----LD-AAKAIALGADIAGMALPVLKS--AIE-----GKESLEQFFR 315 (368)
T ss_dssp STTCEEEEESSCCS----------------H-----HH-HHHHHHHTCSEEEECHHHHHH--HHH-----CHHHHHHHHH
T ss_pred cCCCcEEEECCCCC----------------H-----HH-HHHHHHcCCCEEEEcHHHHHH--Hhc-----ChHHHHHHHH
Confidence 4 589988644221 2 23 445688999999997654110 001 233 466
Q ss_pred HHHHHHHHHHHHhCCccc
Q 022892 263 ELLEELVAIAKVSKGKQR 280 (290)
Q Consensus 263 ~lv~~ir~~~~~lg~~~~ 280 (290)
.+.++++.+-..+|.+++
T Consensus 316 ~l~~eL~~~m~~~G~~~i 333 (368)
T 3vkj_A 316 KIIFELKAAMMLTGSKDV 333 (368)
T ss_dssp HHHHHHHHHHHHTTCCBH
T ss_pred HHHHHHHHHHHHhCCCCH
Confidence 777778877777777544
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.018 Score=54.43 Aligned_cols=229 Identities=13% Similarity=0.053 Sum_probs=126.1
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC---Ccc------------cCCCCChhH
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT---SSK------------SFRGPGMVE 74 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt---s~~------------~~~g~~~~~ 74 (290)
.+...+|+.+=||+-.- | .++.+++-+ +|+-+|.-.+....||. .|- .|...|++.
T Consensus 43 Gl~~~NPv~lAAG~~~~-~----~e~~~~l~~----~G~G~v~~ktvt~~pq~GNp~PR~~~~~~~~iN~~G~~n~G~~~ 113 (354)
T 4ef8_A 43 NNTFANPFMNAAGVMCT-T----TEELVAMTE----SASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDF 113 (354)
T ss_dssp TEEESSSEEECTTSSCS-S----HHHHHHHHH----SSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHH
T ss_pred CEECCCCCEeccCCCCC-C----HHHHHHHHH----cCCCeEEeCcccCcccCCCCCCcEEecchhhhccCCCCCcCHHH
Confidence 55567887666677631 2 345555554 46554333333322321 110 122334444
Q ss_pred HHHHHHHHHHhcCCcEEEeecC--cccHH----HHh---h-hcceecc--c------CCcc-CCHH----HHHHHH-hcC
Q 022892 75 GLKILEKVKIAYDIPIVTDVHE--TVQCE----EVG---K-VADIIQI--P------AFLC-RQTD----LLVAAA-KTG 130 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d--~~~~~----~l~---~-~~d~~kI--g------s~~~-~n~~----lL~~~a-~~~ 130 (290)
.++.+++..+..+.|++..++- +++.- .+. + .+|++-| + .+.+ .+.+ +++++- ..+
T Consensus 114 ~~~~l~~~~~~~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~~ 193 (354)
T 4ef8_A 114 YLAYAAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYP 193 (354)
T ss_dssp HHHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhcCCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhhC
Confidence 5555554433458899998864 33322 222 1 1344432 2 1222 4544 444443 368
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcC-CCcEEE---------Ee--ecC-------CC-CCC---CCCCCchhHHHHHh
Q 022892 131 KIINIKKGQFCASSVMVNSAEKVRLAG-NPNVMV---------CE--RGT-------MF-GYN---DLIVDPRNLEWMRE 187 (290)
Q Consensus 131 ~PVilstG~~~tl~e~~~Ave~i~~~G-n~~i~L---------~~--~gs-------~~-~y~---~~~~dL~~i~~lk~ 187 (290)
+||.+|.....+.+++..+++.+.+.| -.-|++ ++ +.+ .+ +|. -..++++.+..+++
T Consensus 194 ~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~ 273 (354)
T 4ef8_A 194 HSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYR 273 (354)
T ss_dssp SCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHH
Confidence 999999999889999999999888776 443433 11 110 00 111 11356778888887
Q ss_pred -c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHH
Q 022892 188 -A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELL 265 (290)
Q Consensus 188 -~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv 265 (290)
. ++||+.+..=. . ..-+..++.+||++++|=+-+-- ++ |.-++++.
T Consensus 274 ~~~~ipII~~GGI~--------------------s--~~da~~~l~aGAd~V~vgra~l~-----~G-----P~~~~~i~ 321 (354)
T 4ef8_A 274 RCPGKLIFGCGGVY--------------------T--GEDAFLHVLAGASMVQVGTALQE-----EG-----PSIFERLT 321 (354)
T ss_dssp HCTTSEEEEESCCC--------------------S--HHHHHHHHHHTEEEEEECHHHHH-----HC-----TTHHHHHH
T ss_pred hCCCCCEEEECCcC--------------------C--HHHHHHHHHcCCCEEEEhHHHHH-----hC-----HHHHHHHH
Confidence 5 69998743311 1 23345567789999988775421 21 45677787
Q ss_pred HHHHHHHHHhCCcc
Q 022892 266 EELVAIAKVSKGKQ 279 (290)
Q Consensus 266 ~~ir~~~~~lg~~~ 279 (290)
+.+++.-...|-++
T Consensus 322 ~~l~~~m~~~G~~s 335 (354)
T 4ef8_A 322 SELLGVMAKKRYQT 335 (354)
T ss_dssp HHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCC
Confidence 77776655555433
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.072 Score=49.57 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccC-C--CCChhHHHH----HHHHHHHhcCCcEEEeecCcccH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSF-R--GPGMVEGLK----ILEKVKIAYDIPIVTDVHETVQC 100 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~-~--g~~~~~~l~----~L~~~~~~~Gi~~~s~~~d~~~~ 100 (290)
+.+.+++.|+++++ .||+++=-.... |.|++- + ....++.++ .++.+.++.++|+.-+-++++.+
T Consensus 47 ~~~~al~~A~~~v~----~GAdIIDIGgeS----TrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISIDT~~~~Va 118 (314)
T 3tr9_A 47 DLNSALRTAEKMVD----EGADILDIGGEA----TNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISVDTSRPRVM 118 (314)
T ss_dssp SHHHHHHHHHHHHH----TTCSEEEEECCC----SCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEEECSCHHHH
T ss_pred CHHHHHHHHHHHHH----CCCCEEEECCCC----CCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEEeCCCHHHH
Confidence 56788888988888 499988765433 222211 0 111123333 34455566799999999999999
Q ss_pred HHHhh-hccee-cccCCccCCHHHHHHHHhcCCeEEEeCCCC--CC-------------HHHHHHHHHHHHHcCCC-cEE
Q 022892 101 EEVGK-VADII-QIPAFLCRQTDLLVAAAKTGKIINIKKGQF--CA-------------SSVMVNSAEKVRLAGNP-NVM 162 (290)
Q Consensus 101 ~~l~~-~~d~~-kIgs~~~~n~~lL~~~a~~~~PVilstG~~--~t-------------l~e~~~Ave~i~~~Gn~-~i~ 162 (290)
+...+ .++++ -|.+.. ...++..+++.+.||++-.-.. .| .+...+.++.+.+.|-+ +=+
T Consensus 119 ~aAl~aGa~iINDVsg~~--~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI~~~~I 196 (314)
T 3tr9_A 119 REAVNTGADMINDQRALQ--LDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRI 196 (314)
T ss_dssp HHHHHHTCCEEEETTTTC--STTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred HHHHHcCCCEEEECCCCC--chHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHcCCCHhHE
Confidence 88766 56655 444444 2367888999999999965322 12 45555667778888865 235
Q ss_pred EEeecCC---CCCCCCCCCc---hhHHHHHhcCCCEEEeC
Q 022892 163 VCERGTM---FGYNDLIVDP---RNLEWMREANCPVVADV 196 (290)
Q Consensus 163 L~~~gs~---~~y~~~~~dL---~~i~~lk~~~~pV~~D~ 196 (290)
++..|.. |+-.. .-|+ +.+..++.+++||.+-.
T Consensus 197 ilDPG~G~~~F~Kt~-~~n~~lL~~l~~l~~lg~PvL~G~ 235 (314)
T 3tr9_A 197 IIDPGFGQGNYGKNV-SENFYLLNKLPEFVAMGLPVLSGW 235 (314)
T ss_dssp EEECCCCSGGGCCCH-HHHHHHHHTTHHHHTTSSCBEECC
T ss_pred EEeCCCCchhhcCCH-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 5788764 43211 1133 34444445789987733
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.052 Score=52.37 Aligned_cols=231 Identities=13% Similarity=0.080 Sum_probs=128.4
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC---Ccc--------------cCCCCCh
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT---SSK--------------SFRGPGM 72 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt---s~~--------------~~~g~~~ 72 (290)
.+...+|+.+=||+.- |- +....|. ++|+.+|--.+.+..||. .|- .|+..|+
T Consensus 90 Gl~f~NPvglAAG~dk--~~----~~~~~l~----~lGfG~vevgtvT~~pq~GNp~PRlfrl~e~~aiiN~~GfnN~G~ 159 (415)
T 3i65_A 90 HLDFINPFGVAAGFDK--NG----VCIDSIL----KLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGC 159 (415)
T ss_dssp TEEESSSEEECTTSST--TC----SSHHHHH----TTTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCSCBCCH
T ss_pred CEECCCCCEECCCCCC--CH----HHHHHHH----HcCCCeEEeCcccCCcCCCCCCCeEEeccCCCceeecCCCCchhH
Confidence 4556777777677754 32 2223333 469876655555533332 111 1333344
Q ss_pred hHHHHHHHHHHHhc-------CCcEEEeecCcc-----cHHH------Hhhhcceecc--------cCCccCCHHHH---
Q 022892 73 VEGLKILEKVKIAY-------DIPIVTDVHETV-----QCEE------VGKVADIIQI--------PAFLCRQTDLL--- 123 (290)
Q Consensus 73 ~~~l~~L~~~~~~~-------Gi~~~s~~~d~~-----~~~~------l~~~~d~~kI--------gs~~~~n~~lL--- 123 (290)
+..++.+++..++. +.++...+.-.. .-|| +.+++|++-| |.+.+++.+.|
T Consensus 160 d~~~~~l~~~~~~~~~~~~~~~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~ad~ieiNiScPNt~Gl~~lq~~~~l~~l 239 (415)
T 3i65_A 160 DKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNI 239 (415)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCCC--------CCHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccCceEEEEeccccCccccHHHHHHHHHHHHhhCCEEEEECCCCCCCCcccccCHHHHHHH
Confidence 45556666655443 456666665432 1222 2334666543 34455555443
Q ss_pred -HHHHh---------------------cCCe-EEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----------
Q 022892 124 -VAAAK---------------------TGKI-INIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF---------- 170 (290)
Q Consensus 124 -~~~a~---------------------~~~P-VilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~---------- 170 (290)
+++-+ ..+| |++|-....+.+++.+.++.+.+.|-+-|++.-++...
T Consensus 240 l~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~ 319 (415)
T 3i65_A 240 ILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKK 319 (415)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCC
T ss_pred HHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCccccccccccccc
Confidence 33322 2689 99999998888899999999999998766665544310
Q ss_pred -CCCC---CCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 171 -GYND---LIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 171 -~y~~---~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+|.- ....++.+..+++ . .+||+.+..=. . ..-+..++.+||++++|=+-+
T Consensus 320 GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~----------------s------~eDa~e~l~aGAd~VqIgra~ 377 (415)
T 3i65_A 320 GGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIF----------------S------GLDALEKIEAGASVCQLYSCL 377 (415)
T ss_dssp SEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCC----------------S------HHHHHHHHHHTEEEEEESHHH
T ss_pred CCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCC----------------C------HHHHHHHHHcCCCEEEEcHHH
Confidence 0100 0123466777777 5 69998743211 1 334556778999998887654
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCccccc
Q 022892 244 DPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMN 282 (290)
Q Consensus 244 t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~~~~~ 282 (290)
-- + .|.-++++.+.+++.-...|-+++-+
T Consensus 378 l~-----~-----GP~~~~~i~~~L~~~l~~~G~~si~e 406 (415)
T 3i65_A 378 VF-----N-----GMKSAVQIKRELNHLLYQRGYYNLKE 406 (415)
T ss_dssp HH-----H-----GGGHHHHHHHHHHHHHHHTTCSSSTT
T ss_pred Hh-----c-----CHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 11 1 25567888888777666666555443
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.086 Score=48.96 Aligned_cols=160 Identities=15% Similarity=0.174 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH----HHHHHHhcCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI----LEKVKIAYDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~----L~~~~~~~Gi~~~s~~~d~~~~~~l 103 (290)
+.+.+++.|+++++ .||++|=-.... |.|++ .....++.++. ++.+.++.++++.-+-++++.++..
T Consensus 31 ~~~~a~~~a~~~v~----~GAdIIDIGgeS----TrPGa-~~v~~~eE~~Rv~pvI~~l~~~~~vpiSIDT~~~~Va~aA 101 (314)
T 2vef_A 31 ALEQALQQARKLIA----EGASMLDIGGES----TRPGS-SYVEIEEEIQRVVPVIKAIRKESDVLISIDTWKSQVAEAA 101 (314)
T ss_dssp HHHHHHHHHHHHHH----TTCSEEEEECCC----------CHHHHHHHHHHHHHHHHHHHHHCCCEEEEECSCHHHHHHH
T ss_pred CHHHHHHHHHHHHH----CCCCEEEECCCc----CCCCC-CCCCHHHHHHHHHHHHHHHHhhCCceEEEeCCCHHHHHHH
Confidence 35667778888877 599998766433 22221 00001233333 4445566799999999999999887
Q ss_pred hh-hcceec-ccCCccCCHHHHHHHHhcCCeEEEeCC--------------------CCCC-----------HHH-----
Q 022892 104 GK-VADIIQ-IPAFLCRQTDLLVAAAKTGKIINIKKG--------------------QFCA-----------SSV----- 145 (290)
Q Consensus 104 ~~-~~d~~k-Igs~~~~n~~lL~~~a~~~~PVilstG--------------------~~~t-----------l~e----- 145 (290)
.+ .++++- |.+.. ....++..+++.+.||++-.- +..+ ++|
T Consensus 102 l~aGa~iINDVsg~~-~d~~m~~v~a~~~~~vvlmh~~~~g~p~~~~~~~~~~~~~g~~~~~~~~~~y~d~~v~e~v~~~ 180 (314)
T 2vef_A 102 LAAGADLVNDITGLM-GDEKMPHVVAEARAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTEEELADFETLPIEELMEAF 180 (314)
T ss_dssp HHTTCCEEEETTTTC-SCTTHHHHHHHHTCEEEEECCHHHHCTTSTTTTTSCCCCC--CCCC--CHHHHHSCHHHHHHHH
T ss_pred HHcCCCEEEECCCCC-CChHHHHHHHHcCCCEEEEecCCCCCCCCcccccccccccccccccccccccccchHHHHHHHH
Confidence 66 577663 54443 224677778999999999621 1112 444
Q ss_pred HHHHHHHHHHcCCC-cEEEEeecCCCCCCCCCCCchhHHHHHh---cCCCEEEeCCC
Q 022892 146 MVNSAEKVRLAGNP-NVMVCERGTMFGYNDLIVDPRNLEWMRE---ANCPVVADVTH 198 (290)
Q Consensus 146 ~~~Ave~i~~~Gn~-~i~L~~~gs~~~y~~~~~dL~~i~~lk~---~~~pV~~D~sH 198 (290)
....++.+.+.|-+ +=+++..|.-|+-.. .-|+..+..+++ +++||.+-.|.
T Consensus 181 l~~~i~~a~~~GI~~~~IilDPGiGF~kt~-~~nl~ll~~l~~l~~~g~PvL~G~Sr 236 (314)
T 2vef_A 181 FERALARAAEAGIAPENILLDPGIGFGLTK-KENLLLLRDLDKLHQKGYPIFLGVSR 236 (314)
T ss_dssp HHHHHHHHHHHTCCGGGEEEECCTTSSCCH-HHHHHHHHTHHHHHTTSSCBEEECSS
T ss_pred HHHHHHHHHHcCCChhhEEEeCCCCcccch-HHHHHHHHHHHHhhcCCCCEEEEeCc
Confidence 34456677778853 335688886543322 124444444443 68998764443
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.4 Score=43.19 Aligned_cols=185 Identities=15% Similarity=0.059 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEEeecCcccHHHHhh-
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVTDVHETVQCEEVGK- 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s~~~d~~~~~~l~~- 105 (290)
+.+..++.|+++++. |++++=-..-. .....++.++++....++ .++|+.-+-++++.++...+
T Consensus 23 ~~~~a~~~a~~~v~~----GAdiIDIg~g~----------~~v~~~ee~~rvv~~i~~~~~~pisIDT~~~~v~~aAl~a 88 (262)
T 1f6y_A 23 DPAPVQEWARRQEEG----GARALDLNVGP----------AVQDKVSAMEWLVEVTQEVSNLTLCLDSTNIKAIEAGLKK 88 (262)
T ss_dssp CHHHHHHHHHHHHHH----TCSEEEEBCC--------------CHHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC----CCcEEEECCCC----------CCCChHHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHHHhh
Confidence 566778888888874 99987654310 011124566666655554 49999999999998888665
Q ss_pred --hcceec-ccCCccCCH-HHHHHHHhcCCeEEEeC----CCCCCHHHH----HHHHHHHHHcCCC-cEEEEeecCC-CC
Q 022892 106 --VADIIQ-IPAFLCRQT-DLLVAAAKTGKIINIKK----GQFCASSVM----VNSAEKVRLAGNP-NVMVCERGTM-FG 171 (290)
Q Consensus 106 --~~d~~k-Igs~~~~n~-~lL~~~a~~~~PVilst----G~~~tl~e~----~~Ave~i~~~Gn~-~i~L~~~gs~-~~ 171 (290)
..+++- |.+.. .+. .++..+++.+.||++-. |+.-|+++. ...++.+.+.|-+ +=+++..|.. ++
T Consensus 89 ~~Ga~iINdvs~~~-d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~~~IilDPg~g~~g 167 (262)
T 1f6y_A 89 CKNRAMINSTNAER-EKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPAN 167 (262)
T ss_dssp CSSCEEEEEECSCH-HHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCTT
T ss_pred CCCCCEEEECCCCc-ccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEeCCCCcCC
Confidence 355553 44442 332 67788899999999854 444355444 4556667777854 3477788874 33
Q ss_pred CCCC--CCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCC--CcccHH-HHHHHHHHcCCCEEEEeee
Q 022892 172 YNDL--IVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGG--LRELIP-CIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 172 y~~~--~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g--~~~~~~-~~a~aAva~GA~G~~IEkH 242 (290)
+... --.|+.+..+++ + ++|+.+-.| +.|.| .++.+. ..+..|++.|++..++-.|
T Consensus 168 ~~~~~~~~~l~~l~~l~~~~~pg~pvl~G~S---------------rksfg~~~~~~l~~t~~~~a~~~g~~~~iv~~~ 231 (262)
T 1f6y_A 168 VAQDHAPEVLKTLQQIKMLADPAPKTVLGLS---------------NVSQNCQNRPLINRTFLAMAMACGLMSAIADAC 231 (262)
T ss_dssp TCTTHHHHHHHHHHHHHTCCSSCCEEEEEGG---------------GGGTTCSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CChHHHHHHHHHHHHHHHHhCCCCCEEEeec---------------CCcCCCCHHHHHHHHHHHHHHHHhCCeEEECcC
Confidence 3321 123566666777 6 899876222 12223 233333 3345567889985554333
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.28 Score=43.87 Aligned_cols=230 Identities=17% Similarity=0.129 Sum_probs=121.0
Q ss_pred CCchhhHHhhhcCC-CCeEEE-EccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcc---------cCCC
Q 022892 1 MDPSTALFNQLKAA-EPFFLL-AGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSK---------SFRG 69 (290)
Q Consensus 1 ~~~~~~~~~~i~~~-~~~~iI-Agpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~---------~~~g 69 (290)
|+.-...|...... ++.+|. .-+|.. +.+..++.++.|.+ .|+|++..+..-.+|..... .-.|
T Consensus 1 m~~~~~~f~~~~~~~~~~~i~~i~~g~p-~~~~~~~~~~~l~~----~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G 75 (262)
T 2ekc_A 1 MGRISDKFTELKEKREKALVSYLMVGYP-DYETSLKAFKEVLK----NGTDILEIGFPFSDPVADGPTIQVAHEVALKNG 75 (262)
T ss_dssp CCHHHHHHHHHHHHTBCEEEEEEETTSS-CHHHHHHHHHHHHH----TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHhcCCceEEEEecCCCC-ChHHHHHHHHHHHH----cCCCEEEECCCCCCcccccHHHHHHHHHHHHcC
Confidence 33344566655432 332211 124443 67788888888888 59999988752212211000 0012
Q ss_pred CChhHHHHHHHHHHHhc-CCcEEEe-ecCc-------ccHHHHhh-hcceecccCCccCCH-HHHHHHHhcCCe-EEEeC
Q 022892 70 PGMVEGLKILEKVKIAY-DIPIVTD-VHET-------VQCEEVGK-VADIIQIPAFLCRQT-DLLVAAAKTGKI-INIKK 137 (290)
Q Consensus 70 ~~~~~~l~~L~~~~~~~-Gi~~~s~-~~d~-------~~~~~l~~-~~d~~kIgs~~~~n~-~lL~~~a~~~~P-Vilst 137 (290)
..+...+..++++.++. ++|+..- .+++ ..++.+.+ .+|.+-++.-..... .+.+.+-+.|.. |.+-+
T Consensus 76 ~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~ 155 (262)
T 2ekc_A 76 IRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGA 155 (262)
T ss_dssp CCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEEC
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 23345677788888887 8998873 3332 22333434 588777775443322 344445556665 44455
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CCCCCCC-C-CC-chhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCC
Q 022892 138 GQFCASSVMVNSAEKVRLAGNPNVMVCERGT-MFGYNDL-I-VD-PRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGG 212 (290)
Q Consensus 138 G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~~~y~~~-~-~d-L~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~ 212 (290)
..+ +.+.+...++. +. ..+.+-... ..+.... . -+ ...+..+|+ .++||.++.-=+
T Consensus 156 p~t-~~~rl~~ia~~----a~-gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~------------- 216 (262)
T 2ekc_A 156 PTS-TRKRIKLICEA----AD-EMTYFVSVTGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVS------------- 216 (262)
T ss_dssp TTC-CHHHHHHHHHH----CS-SCEEEESSCC---------CHHHHHHHHHHHHHCCSCEEEESSCC-------------
T ss_pred CCC-CHHHHHHHHHh----CC-CCEEEEecCCccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCC-------------
Confidence 444 55655554432 22 233332211 1122211 1 11 246677777 789987732211
Q ss_pred ccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 213 VASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 213 ~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
. +..+.. +..||||+++=+.+.-.-. .+ +++.++++++.+++
T Consensus 217 ----t-----~e~~~~-~~~gADgvIVGSai~~~~~-~~-----~~~~~~~~~~~~~~ 258 (262)
T 2ekc_A 217 ----K-----KEHARE-IGSFADGVVVGSALVKLAG-QK-----KIEDLGNLVKELKE 258 (262)
T ss_dssp ----S-----HHHHHH-HHTTSSEEEECHHHHHHHH-TT-----CHHHHHHHHHHHHH
T ss_pred ----C-----HHHHHH-HHcCCCEEEECHHHHhhhh-hh-----hHHHHHHHHHHHHH
Confidence 1 333434 7889999999877642100 01 56788888888764
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0044 Score=54.79 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD--VHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d 108 (290)
..+.|+++.+ .|++.+.....+. . ...++ ..+..+++++++.++|++.. +.++++++.+.+ .+|
T Consensus 37 ~~~~a~~~~~----~G~~~i~v~d~~~---~--~~~~~----~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad 103 (247)
T 3tdn_A 37 LRDWVVEVEK----RGAGEILLTSIDR---D--GTKSG----YDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGAD 103 (247)
T ss_dssp HHHHHHHHHH----TTCSEEEEEETTT---T--TCSSC----CCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred HHHHHHHHHH----cCCCEEEEEecCc---c--cCCCc----ccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 5677777766 6999886543321 1 11111 23677888899999999885 778888887766 699
Q ss_pred eecccCCccCCHHHHHHHHh
Q 022892 109 IIQIPAFLCRQTDLLVAAAK 128 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~ 128 (290)
.+-||+..+.|.++++++.+
T Consensus 104 ~V~ig~~~l~dp~~~~~~~~ 123 (247)
T 3tdn_A 104 KVSINTAAVENPSLITQIAQ 123 (247)
T ss_dssp EECCSHHHHHCTHHHHHHHH
T ss_pred eeehhhHHhhChHHHHHHHH
Confidence 99999999999887766543
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.086 Score=47.29 Aligned_cols=185 Identities=17% Similarity=0.118 Sum_probs=112.1
Q ss_pred hHHhhhcCCCCeEEEEccC--C-----ccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH
Q 022892 6 ALFNQLKAAEPFFLLAGPN--V-----IESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI 78 (290)
Q Consensus 6 ~~~~~i~~~~~~~iIAgpc--s-----ien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~ 78 (290)
.++..+... .+-+|||.. | |.. ....++|+...+ .|+.++.--+- +..|+| .+..
T Consensus 36 ~~~~al~~~-~~~~IaE~k~aSPskg~i~~-~~p~~~A~~~~~----~GA~~isvlt~-------~~~f~G-----~~~~ 97 (254)
T 1vc4_A 36 SFKEALLRP-GLSVIAEVKRQSPSEGLIRE-VDPVEAALAYAR----GGARAVSVLTE-------PHRFGG-----SLLD 97 (254)
T ss_dssp CHHHHHTSS-SCEEEEEECSCCTTTCCCCS-CCHHHHHHHHHH----TTCSEEEEECC-------CSSSCC-----CHHH
T ss_pred CHHHHHhhc-CCcEEeeecCCCcCCCcCCC-CCHHHHHHHHHH----cCCCEEEEecc-------hhhhcc-----CHHH
Confidence 566666533 478999885 2 211 224677777666 69998854321 122332 3556
Q ss_pred HHHHHHhcCCcEEEee--cCcccHHHHhh-hcceecccCCccCCHHH---HHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 79 LEKVKIAYDIPIVTDV--HETVQCEEVGK-VADIIQIPAFLCRQTDL---LVAAAKTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~--~d~~~~~~l~~-~~d~~kIgs~~~~n~~l---L~~~a~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
|+.+++..++|+..-- .|+.+++.+.. .+|.+-+++..+. ..+ ++.+-..|+-+++... +.+|...|.+
T Consensus 98 l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~-~~l~~l~~~a~~lGl~~lvev~---~~~E~~~a~~- 172 (254)
T 1vc4_A 98 LKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLG-ELTGAYLEEARRLGLEALVEVH---TERELEIALE- 172 (254)
T ss_dssp HHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHG-GGHHHHHHHHHHHTCEEEEEEC---SHHHHHHHHH-
T ss_pred HHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCCEEEECccchH-HHHHHHHHHHHHCCCeEEEEEC---CHHHHHHHHH-
Confidence 7777778999976643 45556666655 6999999888776 322 2223367888877765 7888876654
Q ss_pred HHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c-----CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHH
Q 022892 153 VRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-----NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIA 226 (290)
Q Consensus 153 i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-----~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a 226 (290)
.|.+.+-+-.+. |....+|+.....|.+ . ++||+. .+ |... +.-.
T Consensus 173 ---~gad~IGvn~~~----l~~~~~dl~~~~~L~~~i~~~~~~~~vIA-eg-------------------GI~s--~~dv 223 (254)
T 1vc4_A 173 ---AGAEVLGINNRD----LATLHINLETAPRLGRLARKRGFGGVLVA-ES-------------------GYSR--KEEL 223 (254)
T ss_dssp ---HTCSEEEEESBC----TTTCCBCTTHHHHHHHHHHHTTCCSEEEE-ES-------------------CCCS--HHHH
T ss_pred ---cCCCEEEEcccc----CcCCCCCHHHHHHHHHhCccccCCCeEEE-Ec-------------------CCCC--HHHH
Confidence 355444444443 3344567777766655 3 677765 11 1100 2233
Q ss_pred HHHHHcCCCEEEEeeeC
Q 022892 227 RTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 227 ~aAva~GA~G~~IEkH~ 243 (290)
..... |++|+++=+-+
T Consensus 224 ~~l~~-Ga~gvlVGsAl 239 (254)
T 1vc4_A 224 KALEG-LFDAVLIGTSL 239 (254)
T ss_dssp HTTTT-TCSEEEECHHH
T ss_pred HHHHc-CCCEEEEeHHH
Confidence 34466 99999987765
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.58 Score=42.57 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHH---HHHHhcCCcEEEeecCcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILE---KVKIAYDIPIVTDVHETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~---~~~~~~Gi~~~s~~~d~~~~~~l~ 104 (290)
+.+.+++.|++|++. ||+++=-.... |.|++ .....++.++.+. +..++.++++-.+-+.++-++...
T Consensus 28 ~~~~a~~~a~~m~~~----GAdiIDIGgeS----TRPga-~~vs~eeE~~Rv~pvi~~l~~~~v~iSIDT~~~~Va~~al 98 (270)
T 4hb7_A 28 NVETAINRVKAMIDE----GADIIDVGGVS----TRPGH-EMVTLEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACL 98 (270)
T ss_dssp HHHHHHHHHHHHHHT----TCSEEEEESCC----CSTTC-CCCCHHHHHHHHHHHHHHHTTSSSEEEEECSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC----CCCEEEECCcc----CCCCC-CCCchHHHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHH
Confidence 467788999999884 99998776544 33332 1222234444322 223457999999999999988876
Q ss_pred h-hcceec-ccCCccCCHHHHHHHHhcCCeEEEeCCCCCC------HHHH----HHHHHHHHHcCCC-cEEEEeecCCCC
Q 022892 105 K-VADIIQ-IPAFLCRQTDLLVAAAKTGKIINIKKGQFCA------SSVM----VNSAEKVRLAGNP-NVMVCERGTMFG 171 (290)
Q Consensus 105 ~-~~d~~k-Igs~~~~n~~lL~~~a~~~~PVilstG~~~t------l~e~----~~Ave~i~~~Gn~-~i~L~~~gs~~~ 171 (290)
+ .++++- |.+ ...+..+++.+++.+.|+++---.. + .+|+ .+-++.+...|-+ +=+++.-|.-|+
T Consensus 99 ~aGa~iINDVs~-g~~d~~m~~~va~~~~~~vlMH~~~-~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGFg 176 (270)
T 4hb7_A 99 KLGVDMINDQWA-GLYDHRMFQIVAKYDAEIILMHNGN-GNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFA 176 (270)
T ss_dssp HHTCCEEEETTT-TSSCTHHHHHHHHTTCEEEEECCCS-SCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS
T ss_pred Hhccceeccccc-cccchhHHHHHHHcCCCeEEecccc-CCccccchhHHHHHHHHHHHHHHHcCCCCceEEEeCCCCcc
Confidence 6 688775 332 2345678899999999999963221 2 2333 3345566777853 346778887654
Q ss_pred CCCCCCCc---hhHHHHHhcCCCEEEeCC
Q 022892 172 YNDLIVDP---RNLEWMREANCPVVADVT 197 (290)
Q Consensus 172 y~~~~~dL---~~i~~lk~~~~pV~~D~s 197 (290)
=+. .=|+ +.+..++.+++||.+-.|
T Consensus 177 Kt~-~~N~~ll~~l~~~~~lg~PvLvG~S 204 (270)
T 4hb7_A 177 KTR-NEEAEVMARLDELVATEYPVLLATS 204 (270)
T ss_dssp CCH-HHHHHHHTCHHHHHTTCSCBEECCT
T ss_pred ccc-ccHHHHHhhHHHHhcCCCCEEEEec
Confidence 211 1233 445555557999877444
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.38 Score=44.25 Aligned_cols=189 Identities=18% Similarity=0.177 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH----HHHHHHhcCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI----LEKVKIAYDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~----L~~~~~~~Gi~~~s~~~d~~~~~~l 103 (290)
+.+..++.|+++++ .||+++=-.... |.|++ .....++.++. ++.+.++ ++|+.-+-++++.++..
T Consensus 44 ~~~~a~~~a~~~v~----~GAdiIDIGgeS----TrPga-~~v~~~eE~~Rv~pvi~~l~~~-~vpiSIDT~~~~Va~aA 113 (294)
T 2y5s_A 44 ARDDALRRAERMIA----EGADLLDIGGES----TRPGA-PPVPLDEELARVIPLVEALRPL-NVPLSIDTYKPAVMRAA 113 (294)
T ss_dssp CTTHHHHHHHHHHH----TTCSEEEEESSC----CSTTC-CCCCHHHHHHHHHHHHHHHGGG-CSCEEEECCCHHHHHHH
T ss_pred CHHHHHHHHHHHHH----CCCCEEEECCCc----CCCCC-CCCCHHHHHHHHHHHHHHHhhC-CCeEEEECCCHHHHHHH
Confidence 34667888888887 599998766433 22221 11222344444 3333333 99999999999999887
Q ss_pred hh-hccee-cccCCccCCHHHHHHHHhcCCeEEEeC--CCCCC---------------HHHHHHHHHHHHHcCCC-cEEE
Q 022892 104 GK-VADII-QIPAFLCRQTDLLVAAAKTGKIINIKK--GQFCA---------------SSVMVNSAEKVRLAGNP-NVMV 163 (290)
Q Consensus 104 ~~-~~d~~-kIgs~~~~n~~lL~~~a~~~~PVilst--G~~~t---------------l~e~~~Ave~i~~~Gn~-~i~L 163 (290)
.+ ..+++ -|.+.. ...++..+++.+.||++.. |+..| .+.....++.+.+.|-+ +=++
T Consensus 114 l~aGa~iINdVsg~~--d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~~~Ii 191 (294)
T 2y5s_A 114 LAAGADLINDIWGFR--QPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDAGVAAERIC 191 (294)
T ss_dssp HHHTCSEEEETTTTC--STTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred HHcCCCEEEECCCCC--chHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHcCCChhhEE
Confidence 66 56766 454444 4467888999999999955 22212 45566677778888855 2366
Q ss_pred EeecCCCCCCCCCCCchhHHH---HH-----hcCCCEEEeCCCC------CCCCCCCccCCCCccCCC-CcccH-HHHHH
Q 022892 164 CERGTMFGYNDLIVDPRNLEW---MR-----EANCPVVADVTHS------LQQPAGKKLDGGGVASGG-LRELI-PCIAR 227 (290)
Q Consensus 164 ~~~gs~~~y~~~~~dL~~i~~---lk-----~~~~pV~~D~sHs------~~~~~~~~~~~~~~~~~g-~~~~~-~~~a~ 227 (290)
+..|..|.-....-|+..+.. ++ .+++|+.+-.|.- .+.| .. .|... ...+.
T Consensus 192 lDPG~Gf~kt~~~~n~~ll~~l~~l~~~~~~~~g~Pvl~G~Srksfig~l~g~~------------~~~~R~~~t~a~~~ 259 (294)
T 2y5s_A 192 VDPGFGFGKAVVDDNYALLAALPDTAPARPDGRAYPILAGMSRKSMLGAVIGGK------------PPLERVAASVAAAL 259 (294)
T ss_dssp EECCTTSSSCTTHHHHHHHHTGGGGSCBCTTSSBCCBEEECTTCHHHHTTTTSC------------CGGGCHHHHHHHHH
T ss_pred EeCCCcccccchHHHHHHHHHHHHHHhccccCCCCCEEEEecccHHhhhhcCCC------------chhhhhHHHHHHHH
Confidence 678865432110123333333 34 2468876644431 0001 01 22222 22334
Q ss_pred HHHHcCCCEEEEeee
Q 022892 228 TAIAVGVDGVFMEVH 242 (290)
Q Consensus 228 aAva~GA~G~~IEkH 242 (290)
.|+..||+ +|=.|
T Consensus 260 ~a~~~Ga~--IvrvH 272 (294)
T 2y5s_A 260 CAVERGAA--IVRVH 272 (294)
T ss_dssp HHHHTTCS--EEEES
T ss_pred HHHHcCCc--EEEcC
Confidence 56788998 88889
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.19 Score=46.55 Aligned_cols=171 Identities=11% Similarity=0.061 Sum_probs=108.4
Q ss_pred CCCeEEEEccCCccC----H----------HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHH
Q 022892 14 AEPFFLLAGPNVIES----E----------EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKIL 79 (290)
Q Consensus 14 ~~~~~iIAgpcsien----~----------~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L 79 (290)
-+|+.|+.|+.-+-. . +...+.|+++++ .|+|+|--..-. |.|+.+. ...++.++.+
T Consensus 44 ~~~p~i~m~I~n~tpdsf~d~i~~~~~~~~~~~~~~A~~~v~----~GAdiIDIg~~S----trP~~~~-vs~eee~~vV 114 (310)
T 2h9a_B 44 PNPPRFALEVFDTPPTDWPDILVEPFKDVINDPVAWAKKCVE----YGADIVALRLVS----AHPDGQN-RSGAELAEVC 114 (310)
T ss_dssp CSCCEEEEEEESSCCSSCCHHHHGGGTTTTTCHHHHHHHHHH----TTCSEEEEECGG----GCTTTTC-CCHHHHHHHH
T ss_pred CCCCeEEEEEeeCCCcccchhhhhhhccHHHHHHHHHHHHHH----cCCcEEEEeCcc----CCCCCCC-CCHHHHHHHH
Confidence 456676777654311 1 234566666664 699997665432 2333221 1224666677
Q ss_pred HHHHHhcCCcEEE-ee----cCcccHHHHhh-hcc---e-ecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 022892 80 EKVKIAYDIPIVT-DV----HETVQCEEVGK-VAD---I-IQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 80 ~~~~~~~Gi~~~s-~~----~d~~~~~~l~~-~~d---~-~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~A 149 (290)
+.+.+..++|+.- +- ++++.++...+ ..+ + .-|-.. +...++..+++.+.||++..-. +++...+.
T Consensus 115 ~~v~~~~~vplsI~DT~~~~~~~~V~eaal~aga~~k~iINdvs~~--~~~~~~~~aa~~g~~vv~m~~~--dv~~l~~~ 190 (310)
T 2h9a_B 115 KAVADAIDVPLMIIGCGVEEKDAEIFPVIGEALSGRNCLLSSATKD--NYKPIVATCMVHGHSVVASAPL--DINLSKQL 190 (310)
T ss_dssp HHHHHHCSSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEECTT--THHHHHHHHHHHTCEEEEECSS--CHHHHHHH
T ss_pred HHHHHhCCceEEEECCCCCCCCHHHHHHHHHhCCCCCCEEEECCCC--ccHHHHHHHHHhCCCEEEEChh--HHHHHHHH
Confidence 7888888999988 88 88888877666 454 3 344433 3346777788999999997632 58888888
Q ss_pred HHHHHHcCCC-cEEEEeecCC-CCCCCC--CCCchhHHH--HH---hcCCCEEEeCC
Q 022892 150 AEKVRLAGNP-NVMVCERGTM-FGYNDL--IVDPRNLEW--MR---EANCPVVADVT 197 (290)
Q Consensus 150 ve~i~~~Gn~-~i~L~~~gs~-~~y~~~--~~dL~~i~~--lk---~~~~pV~~D~s 197 (290)
++.+.+.|-+ +=+++..|.. ++|..+ .-|+..+.. |. .+++|+.+-.|
T Consensus 191 ~~~a~~~Gi~~e~IilDPg~g~~g~~~e~~~~~l~~ir~~al~~~~~lg~P~l~g~S 247 (310)
T 2h9a_B 191 NIMIMEMNLAPNRIIMDPLIGALGYGIEYSYSIIERMRLGALTGDKILAMPVVCFIG 247 (310)
T ss_dssp HHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHHHHHTTCGGGCSCBEECHH
T ss_pred HHHHHHCCCChhhEEEeCCCccccCchHhHHHHHHHHHHhhhhhhhcCCCCEEEEcc
Confidence 9999888853 3477888876 354321 123444544 32 26899877443
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.15 Score=45.51 Aligned_cols=181 Identities=10% Similarity=0.076 Sum_probs=105.4
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcc-cCCCCC---hhHHHHHHHHHHHhcCCcE
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSK-SFRGPG---MVEGLKILEKVKIAYDIPI 90 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~-~~~g~~---~~~~l~~L~~~~~~~Gi~~ 90 (290)
-++|+|..+.. .....++..+++.+ .|+.+|-.- +| . .+.. .|..+. +.+..+.++++|+++|+++
T Consensus 30 ~~lylIt~~~~--~~~~~~~~~~~al~----~Gv~~vqlR--~K-~-~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~l 99 (243)
T 3o63_A 30 ARLYLCTDARR--ERGDLAQFAEAALA----GGVDIIQLR--DK-G-SPGELRFGPLQARDELAACEILADAAHRYGALF 99 (243)
T ss_dssp CCEEEEECCCT--TTCCHHHHHHHHHH----TTCSEEEEC--CT-T-CHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCc--ccchHHHHHHHHHH----CCCCEEEEc--cC-C-CCccccccCCCHHHHHHHHHHHHHHHHhhCCEE
Confidence 46899987753 21224555555544 688766431 22 1 0000 000011 1234567899999999999
Q ss_pred EEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 91 VTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 91 ~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
+.. +.++...+ .+|-+-+|..++.... ++..-..++.|.+|.. |++|+..|.+ .|-+.|.+-..
T Consensus 100 iIn----d~~~lA~~~gAdGVHLg~~dl~~~~-~r~~~~~~~~iG~S~h---t~~Ea~~A~~----~GaDyI~vgpv--- 164 (243)
T 3o63_A 100 AVN----DRADIARAAGADVLHLGQRDLPVNV-ARQILAPDTLIGRSTH---DPDQVAAAAA----GDADYFCVGPC--- 164 (243)
T ss_dssp EEE----SCHHHHHHHTCSEEEECTTSSCHHH-HHHHSCTTCEEEEEEC---SHHHHHHHHH----SSCSEEEECCS---
T ss_pred EEe----CHHHHHHHhCCCEEEecCCcCCHHH-HHHhhCCCCEEEEeCC---CHHHHHHHhh----CCCCEEEEcCc---
Confidence 885 23444445 5888999999886543 3555556788888873 8999887754 56655555221
Q ss_pred CCCCC----CCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 170 FGYND----LIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 170 ~~y~~----~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
|+.+. ..+.+..+..+++ . ++||+... |.. +.-.....+.||+|+.+=+-
T Consensus 165 f~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiG--------------------GI~---~~ni~~~~~aGa~gvav~sa 221 (243)
T 3o63_A 165 WPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIG--------------------GIN---AQRLPAVLDAGARRIVVVRA 221 (243)
T ss_dssp SCCCC-----CCCHHHHHHHHTC---CCCEEEES--------------------SCC---TTTHHHHHHTTCCCEEESHH
T ss_pred cCCCCCCCcchhhHHHHHHHHHhccCCCCEEEec--------------------CCC---HHHHHHHHHcCCCEEEEeHH
Confidence 21111 1356667777765 2 78987631 110 11133557889999988776
Q ss_pred C
Q 022892 243 D 243 (290)
Q Consensus 243 ~ 243 (290)
+
T Consensus 222 i 222 (243)
T 3o63_A 222 I 222 (243)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.6 Score=41.29 Aligned_cols=183 Identities=13% Similarity=0.066 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC-Ccc--------cCCCCChhHHHHHHHHHHHhcCCcEEEee-cCc
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT-SSK--------SFRGPGMVEGLKILEKVKIAYDIPIVTDV-HET 97 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt-s~~--------~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~-~d~ 97 (290)
+.+...+.+++|.+ .|+|++-.+..-.+|-- .+. .-.|..+...+..++++++..++|+..-. +++
T Consensus 30 ~~~~~~~~~~~l~~----~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~~~~ 105 (262)
T 1rd5_A 30 DLATTAEALRLLDG----CGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKP 105 (262)
T ss_dssp CHHHHHHHHHHHHH----TTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHH
T ss_pred CHHHHHHHHHHHHH----cCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcH
Confidence 44666777777766 69999876531111210 000 01233345667778888878899986532 222
Q ss_pred ---ccHHHHhh-hcceecccCCccCCH-HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 98 ---VQCEEVGK-VADIIQIPAFLCRQT-DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 98 ---~~~~~l~~-~~d~~kIgs~~~~n~-~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
..++.+.+ .+|.+-++-...... .+++.+.+.|+++++--...-+.+.+....+ .+. ..+.+... ++|
T Consensus 106 ~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~----~~~-g~v~~~s~--~G~ 178 (262)
T 1rd5_A 106 IMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITK----ASE-GFVYLVSV--NGV 178 (262)
T ss_dssp HHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHH----HCC-SCEEEECS--SCC
T ss_pred HHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHh----cCC-CeEEEecC--CCC
Confidence 12333444 688777764444333 4556666678775554444414444443332 233 23443322 222
Q ss_pred CC---C--CCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 173 ND---L--IVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 173 ~~---~--~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.- . ...+..+..+++ .++||.++.-=+ . +.-+....++||+|+++=+-+
T Consensus 179 tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~-----------------~-----~e~~~~~~~~GAdgvvVGSai 233 (262)
T 1rd5_A 179 TGPRANVNPRVESLIQEVKKVTNKPVAVGFGIS-----------------K-----PEHVKQIAQWGADGVIIGSAM 233 (262)
T ss_dssp BCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCC-----------------S-----HHHHHHHHHTTCSEEEECHHH
T ss_pred CCCCcCCCchHHHHHHHHHhhcCCeEEEECCcC-----------------C-----HHHHHHHHHcCCCEEEEChHH
Confidence 11 1 112345666777 689998742211 1 334555677899999988765
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.7 Score=41.87 Aligned_cols=208 Identities=14% Similarity=0.104 Sum_probs=114.6
Q ss_pred CchhhHHhhhcCCCCeEEEEccCC-ccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcc----c-----CCCCC
Q 022892 2 DPSTALFNQLKAAEPFFLLAGPNV-IESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSK----S-----FRGPG 71 (290)
Q Consensus 2 ~~~~~~~~~i~~~~~~~iIAgpcs-ien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~----~-----~~g~~ 71 (290)
..-...|......++..+|.=... --|.+..++.++.|.+ .|+|+|-.+....+|-.... + -.|..
T Consensus 5 ~ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~----~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~ 80 (271)
T 3nav_A 5 NRYQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLID----AGADALELGMPFSDPLADGPTIQGANLRALAAKTT 80 (271)
T ss_dssp CHHHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHH----TTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHH----cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCC
Confidence 334566777665444333332111 1156778888888877 59999887753222321000 0 12333
Q ss_pred hhHHHHHHHHHHHh-cCCcEEE-eecCc---c----cHHHHhh-hcceecccCCccC-CHHHHHHHHhcCC-eEEEeCCC
Q 022892 72 MVEGLKILEKVKIA-YDIPIVT-DVHET---V----QCEEVGK-VADIIQIPAFLCR-QTDLLVAAAKTGK-IINIKKGQ 139 (290)
Q Consensus 72 ~~~~l~~L~~~~~~-~Gi~~~s-~~~d~---~----~~~~l~~-~~d~~kIgs~~~~-n~~lL~~~a~~~~-PVilstG~ 139 (290)
+.+.++.++++.++ ..+|++- +-+++ . -++.+.+ .+|-+-|+---.. -.++.+.+.+.|. +|.|-+..
T Consensus 81 ~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~ 160 (271)
T 3nav_A 81 PDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPT 160 (271)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 44668888888877 6888854 33332 1 1233333 4888877754443 3356666667787 46677776
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEeecCCC---CCCCC-CCC-chhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCc
Q 022892 140 FCASSVMVNSAEKVRLAGNPNVMVCERGTMF---GYNDL-IVD-PRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGV 213 (290)
Q Consensus 140 ~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~---~y~~~-~~d-L~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~ 213 (290)
+ +.+.+...++ .+.. .+- |+|.. +.... .-+ ...+..+|+ .++||++.- ++
T Consensus 161 t-~~eri~~i~~----~~~g-fiY--~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGf--GI------------- 217 (271)
T 3nav_A 161 A-SDETLRAVAQ----LGKG-YTY--LLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGF--GI------------- 217 (271)
T ss_dssp C-CHHHHHHHHH----HCCS-CEE--ECCCC--------CCHHHHHHHHHHHHTTCCCEEECS--SC-------------
T ss_pred C-CHHHHHHHHH----HCCC-eEE--EEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEEC--CC-------------
Confidence 6 7666665544 2322 222 22221 11111 111 244666777 789998721 11
Q ss_pred cCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 214 ASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 214 ~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.. +..+..+++.||||+|+=+.+
T Consensus 218 --st-----~e~~~~~~~~gADgvIVGSAi 240 (271)
T 3nav_A 218 --SE-----PAQVKQAIEAGAAGAISGSAV 240 (271)
T ss_dssp --CS-----HHHHHHHHHTTCSEEEESHHH
T ss_pred --CC-----HHHHHHHHHcCCCEEEECHHH
Confidence 12 455666789999999997765
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.012 Score=51.63 Aligned_cols=183 Identities=14% Similarity=0.121 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
..++|+++.+ .|++++-...... . +.+.+ ..++.+++++ +.++|++. -+.++++++.+.+ .+|
T Consensus 32 ~~~~a~~~~~----~Gad~i~v~d~~~---~----~~~~~--~~~~~i~~i~-~~~ipvi~~Ggi~~~~~~~~~~~~Gad 97 (241)
T 1qo2_A 32 PVELVEKLIE----EGFTLIHVVDLSN---A----IENSG--ENLPVLEKLS-EFAEHIQIGGGIRSLDYAEKLRKLGYR 97 (241)
T ss_dssp HHHHHHHHHH----TTCCCEEEEEHHH---H----HHCCC--TTHHHHHHGG-GGGGGEEEESSCCSHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH----cCCCEEEEecccc---c----ccCCc--hhHHHHHHHH-hcCCcEEEECCCCCHHHHHHHHHCCCC
Confidence 5777877776 6998876532211 0 11111 2367778888 88999987 4566666776655 699
Q ss_pred eecccCCccCCHHHHHHHHhcCCeE--EEeCC------------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC-CC
Q 022892 109 IIQIPAFLCRQTDLLVAAAKTGKII--NIKKG------------QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG-YN 173 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~~~PV--ilstG------------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~-y~ 173 (290)
.+.+|+..+.|.++++.+...+..+ .++.. ...+..|+... +...|-..+.+ +..+.-+ +.
T Consensus 98 ~V~lg~~~l~~p~~~~~~~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~---~~~~G~~~i~~-t~~~~~g~~~ 173 (241)
T 1qo2_A 98 RQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKR---LKEYGLEEIVH-TEIEKDGTLQ 173 (241)
T ss_dssp EEEECHHHHHCTTHHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHH---HHTTTCCEEEE-EETTHHHHTC
T ss_pred EEEECchHhhChHHHHHHHHcCCcEEEEEEecCCEEEECCceecCCCCHHHHHHH---HHhCCCCEEEE-EeecccccCC
Confidence 9999999999988887774344333 34331 01155565432 23456554444 4432111 21
Q ss_pred CCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc-----C-CCEEEEeeeCCCC
Q 022892 174 DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV-----G-VDGVFMEVHDDPL 246 (290)
Q Consensus 174 ~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~-----G-A~G~~IEkH~t~d 246 (290)
-.|+..+..+++ .++||+....-+ . +.-+...... | |+|+++=+-+
T Consensus 174 --g~~~~~i~~l~~~~~iPvia~GGI~-----------------~-----~~d~~~~~~~~~~~~G~adgv~vgsal--- 226 (241)
T 1qo2_A 174 --EHDFSLTKKIAIEAEVKVLAAGGIS-----------------S-----ENSLKTAQKVHTETNGLLKGVIVGRAF--- 226 (241)
T ss_dssp --CCCHHHHHHHHHHHTCEEEEESSCC-----------------S-----HHHHHHHHHHHHHTTTSEEEEEECHHH---
T ss_pred --cCCHHHHHHHHHhcCCcEEEECCCC-----------------C-----HHHHHHHHhcccccCCeEeEEEeeHHH---
Confidence 247888888888 799998732211 1 2233344555 9 9999998876
Q ss_pred CCCCCCCCCCChHHHHHH
Q 022892 247 NAPVDGPTQWPLRNLEEL 264 (290)
Q Consensus 247 ka~~D~~~sl~p~~l~~l 264 (290)
+...++++++.+.
T Consensus 227 -----~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 227 -----LEGILTVEVMKRY 239 (241)
T ss_dssp -----HTTSSCHHHHHHH
T ss_pred -----HcCCCCHHHHHHH
Confidence 3445566665543
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.14 Score=46.65 Aligned_cols=128 Identities=13% Similarity=-0.031 Sum_probs=79.1
Q ss_pred HHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcC-CCcEEEEeecC---------C---------C-CCCCC---C
Q 022892 121 DLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAG-NPNVMVCERGT---------M---------F-GYNDL---I 176 (290)
Q Consensus 121 ~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~G-n~~i~L~~~gs---------~---------~-~y~~~---~ 176 (290)
++++++-+ .++||++|.....+.+++...++.+.+.| -+-|++..++. . + +|... .
T Consensus 150 ~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p 229 (314)
T 2e6f_A 150 TYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILP 229 (314)
T ss_dssp HHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccH
Confidence 35555543 48999999887778889998888888888 54444332220 0 0 00000 1
Q ss_pred CCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCC
Q 022892 177 VDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254 (290)
Q Consensus 177 ~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~ 254 (290)
..+..+..+++ . ++||+....=. . ..-+..++++||++++|=+-+--
T Consensus 230 ~~~~~i~~v~~~~~~ipvi~~GGI~-----------------~-----~~da~~~l~~GAd~V~ig~~~l~--------- 278 (314)
T 2e6f_A 230 TALANVNAFYRRCPDKLVFGCGGVY-----------------S-----GEDAFLHILAGASMVQVGTALQE--------- 278 (314)
T ss_dssp HHHHHHHHHHHHCTTSEEEEESSCC-----------------S-----HHHHHHHHHHTCSSEEECHHHHH---------
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC-----------------C-----HHHHHHHHHcCCCEEEEchhhHh---------
Confidence 23566777777 6 89998742211 1 33455667889999988766521
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCccc
Q 022892 255 QWPLRNLEELLEELVAIAKVSKGKQR 280 (290)
Q Consensus 255 sl~p~~l~~lv~~ir~~~~~lg~~~~ 280 (290)
-+|.-++++.+.++..-...|-+++
T Consensus 279 -~~p~~~~~i~~~l~~~~~~~g~~~i 303 (314)
T 2e6f_A 279 -EGPGIFTRLEDELLEIMARKGYRTL 303 (314)
T ss_dssp -HCTTHHHHHHHHHHHHHHHHTCCSS
T ss_pred -cCcHHHHHHHHHHHHHHHHcCCCCH
Confidence 1345777888777776666665544
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.14 Score=47.85 Aligned_cols=171 Identities=13% Similarity=0.083 Sum_probs=106.9
Q ss_pred CCCeEEEEccCCccC-------------HHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHH
Q 022892 14 AEPFFLLAGPNVIES-------------EEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILE 80 (290)
Q Consensus 14 ~~~~~iIAgpcsien-------------~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~ 80 (290)
-+|+.+..+++-+.. .+...+.|++++ ++.|+|+|--.... |.|+ ......++-.+.++
T Consensus 51 ~n~p~iam~V~D~~pe~~~~v~~~~~~~~~~~~~~A~~~v---~~~GAdiIDIg~eS----trP~-~~~vs~ee~~~~V~ 122 (323)
T 4djd_D 51 VNRPVIGMEVQDIVPDWPDVLKDPFTDVINEPGRWAQKCV---AEYGADLIYLKLDG----ADPE-GANHSVDQCVATVK 122 (323)
T ss_dssp CSCCEEEEEEESSCCSCCHHHHGGGTTTTTCHHHHHHHHH---HTTCCSEEEEECGG----GCTT-TTCCCHHHHHHHHH
T ss_pred CCCCeEEEEEecCCccchhhHHHHHHHHHHhHHHHHHHHH---HHcCCCEEEEcCcc----CCCC-CCCCCHHHHHHHHH
Confidence 455666666655321 244677777777 35799987664333 2222 11122234555677
Q ss_pred HHHHhcCCcEEEe-----ecCcccHHHHhh-hcce-ecccCCccCC-HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 81 KVKIAYDIPIVTD-----VHETVQCEEVGK-VADI-IQIPAFLCRQ-TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 81 ~~~~~~Gi~~~s~-----~~d~~~~~~l~~-~~d~-~kIgs~~~~n-~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
++.+..++|+.-+ -++++.++...+ ..+. --|.|-.-.| ..++..+++.+.||++.... +++...+.++.
T Consensus 123 ~v~~~~~vPlsIDg~~~~T~~~eV~eaAleagag~~~lINsv~~~~~~~m~~laa~~g~~vVlmh~~--d~~~~~~l~~~ 200 (323)
T 4djd_D 123 EVLQAVGVPLVVVGCGDVEKDHEVLEAVAEAAAGENLLLGNAEQENYKSLTAACMVHKHNIIARSPL--DINICKQLNIL 200 (323)
T ss_dssp HHHHHCCSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEEBTTBCHHHHHHHHHHTCEEEEECSS--CHHHHHHHHHH
T ss_pred HHHhhCCceEEEECCCCCCCCHHHHHHHHHhcCCCCCeEEECCcccHHHHHHHHHHhCCeEEEEccc--hHHHHHHHHHH
Confidence 7778899999999 999988888766 3331 1222222223 46778888999999998743 57777888888
Q ss_pred HHHcCCC-cEEEEeecCC-CCCCCCCCCchhHHHHH--------hcCCCEEEe
Q 022892 153 VRLAGNP-NVMVCERGTM-FGYNDLIVDPRNLEWMR--------EANCPVVAD 195 (290)
Q Consensus 153 i~~~Gn~-~i~L~~~gs~-~~y~~~~~dL~~i~~lk--------~~~~pV~~D 195 (290)
+.+.|-+ +=+++..|.. +++..+ -++..+..++ .+++||++-
T Consensus 201 a~~~GI~~e~IIlDPg~g~fgk~~e-~~l~~l~~ir~~al~~~~~lg~PvL~G 252 (323)
T 4djd_D 201 INEMNLPLDHIVIDPSIGGLGYGIE-YSFSIMERIRLGALQGDKMLSMPVICT 252 (323)
T ss_dssp HHTTTCCGGGEEEECCCCCTTTTHH-HHHHHHHHHHHHHHHTCGGGCSCBEEE
T ss_pred HHHcCCCHHHEEEeCCCccccCCHH-HHHHHHHHHHHHhhcccccCCCCEEEe
Confidence 8888852 2366788875 455332 2444444443 278998774
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.46 Score=42.98 Aligned_cols=207 Identities=17% Similarity=0.105 Sum_probs=113.7
Q ss_pred hhHHhhhcCCCCeEEEEccCCc-cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcc----c-----CCCCChhH
Q 022892 5 TALFNQLKAAEPFFLLAGPNVI-ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSK----S-----FRGPGMVE 74 (290)
Q Consensus 5 ~~~~~~i~~~~~~~iIAgpcsi-en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~----~-----~~g~~~~~ 74 (290)
...|......++..+|.=..+- -|.+...+.++.|.+ .|+|++-.+....+|--... . -.|..+..
T Consensus 6 ~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~----~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~ 81 (267)
T 3vnd_A 6 QAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVD----NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSD 81 (267)
T ss_dssp HHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHH----TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHH----cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHH
Confidence 4566666544443333322211 145777788877777 69999887743222321100 0 02333345
Q ss_pred HHHHHHHHHHh-cCCcEEEe-ecCc-------ccHHHHhh-hcceecccCCccC-CHHHHHHHHhcCCe-EEEeCCCCCC
Q 022892 75 GLKILEKVKIA-YDIPIVTD-VHET-------VQCEEVGK-VADIIQIPAFLCR-QTDLLVAAAKTGKI-INIKKGQFCA 142 (290)
Q Consensus 75 ~l~~L~~~~~~-~Gi~~~s~-~~d~-------~~~~~l~~-~~d~~kIgs~~~~-n~~lL~~~a~~~~P-VilstG~~~t 142 (290)
.+..++++.++ ..+|++-- -+++ .-++.+.+ .+|.+-|+---.. -.++.+.+.+.|.. |.+-+..+ +
T Consensus 82 ~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t-~ 160 (267)
T 3vnd_A 82 CFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNA-D 160 (267)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTC-C
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCC-C
Confidence 68888888877 78887653 3354 12333334 5888888755443 33566667777874 55777766 7
Q ss_pred HHHHHHHHHHHHHcCCCcEEEE-eecCCCCCCC-CCC-CchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCC
Q 022892 143 SSVMVNSAEKVRLAGNPNVMVC-ERGTMFGYND-LIV-DPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGL 218 (290)
Q Consensus 143 l~e~~~Ave~i~~~Gn~~i~L~-~~gs~~~y~~-~~~-dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~ 218 (290)
.+.+...++ .+..-+.++ ..|+ .+... ..- ....+..+|+ .++||.++.-=+ .
T Consensus 161 ~eri~~i~~----~~~gfvY~vS~~Gv-TG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~-----------------~- 217 (267)
T 3vnd_A 161 ADTLKMVSE----QGEGYTYLLSRAGV-TGTESKAGEPIENILTQLAEFNAPPPLLGFGIA-----------------E- 217 (267)
T ss_dssp HHHHHHHHH----HCCSCEEESCCCCC-C--------CHHHHHHHHHTTTCCCEEECSSCC-----------------S-
T ss_pred HHHHHHHHH----hCCCcEEEEecCCC-CCCccCCcHHHHHHHHHHHHhcCCCEEEECCcC-----------------C-
Confidence 766665544 222223221 2221 12111 011 1355677777 789998732111 1
Q ss_pred cccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 219 RELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 219 ~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+..+..++..||||+|+=+.+
T Consensus 218 ----~e~~~~~~~~gADgvVVGSai 238 (267)
T 3vnd_A 218 ----PEQVRAAIKAGAAGAISGSAV 238 (267)
T ss_dssp ----HHHHHHHHHTTCSEEEECHHH
T ss_pred ----HHHHHHHHHcCCCEEEECHHH
Confidence 455655788999999998765
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.073 Score=47.03 Aligned_cols=109 Identities=10% Similarity=0.041 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecc
Q 022892 34 RMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQI 112 (290)
Q Consensus 34 e~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kI 112 (290)
+.++.+++ +|+|+|....-. |.+| +.++.+.+.+++.|+.++.++++.+.+..+.+ .+|++-+
T Consensus 92 ~~i~~~~~----aGad~I~l~~~~---~~~p---------~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~ 155 (229)
T 3q58_A 92 QDVDALAQ----AGADIIAFDASF---RSRP---------VDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKGIEFIGT 155 (229)
T ss_dssp HHHHHHHH----HTCSEEEEECCS---SCCS---------SCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHH----cCCCEEEECccc---cCCh---------HHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhCCCCEEEe
Confidence 34444444 599988654321 1111 34667777778889999999999999988877 6999954
Q ss_pred cCC--------ccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 113 PAF--------LCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 113 gs~--------~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
..+ .-.++++++++.+.+.||+-.-|.. |.+++..+.+ .|..-+++
T Consensus 156 ~~~g~t~~~~~~~~~~~li~~l~~~~ipvIA~GGI~-t~~d~~~~~~----~GadgV~V 209 (229)
T 3q58_A 156 TLSGYTGPITPVEPDLAMVTQLSHAGCRVIAEGRYN-TPALAANAIE----HGAWAVTV 209 (229)
T ss_dssp TTTTSSSSCCCSSCCHHHHHHHHTTTCCEEEESSCC-SHHHHHHHHH----TTCSEEEE
T ss_pred cCccCCCCCcCCCCCHHHHHHHHHcCCCEEEECCCC-CHHHHHHHHH----cCCCEEEE
Confidence 322 2357788998877789999999998 9999988654 47654444
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.048 Score=49.74 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccC----CHHHHHHHH-hc--CCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCR----QTDLLVAAA-KT--GKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~----n~~lL~~~a-~~--~~PVilstG~~~tl~ 144 (290)
.+.++.|.++++++|+.++.++++.+.++...+ .++++-|..++.. ++.....+. .. +.||+-.-|.. |++
T Consensus 155 ~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIaesGI~-t~e 233 (272)
T 3tsm_A 155 DDLAKELEDTAFALGMDALIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIF-THE 233 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTSCCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEESSCC-SHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEECCCC-CHH
Confidence 467999999999999999999999999988777 6999999988763 233333333 33 68999999999 999
Q ss_pred HHHHHHHHHHHcCCCcEEE
Q 022892 145 VMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L 163 (290)
++..+ ...|-+-+.+
T Consensus 234 dv~~l----~~~Ga~gvLV 248 (272)
T 3tsm_A 234 DCLRL----EKSGIGTFLI 248 (272)
T ss_dssp HHHHH----HTTTCCEEEE
T ss_pred HHHHH----HHcCCCEEEE
Confidence 98875 4456544433
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.078 Score=46.89 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecc
Q 022892 34 RMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQI 112 (290)
Q Consensus 34 e~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kI 112 (290)
+.++.+++ +|+|+|....-. +.+| +.++.+.+.+++.|+.++.++++.+.+..+.+ .+|++-+
T Consensus 92 ~~i~~~~~----~Gad~V~l~~~~---~~~p---------~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~ 155 (232)
T 3igs_A 92 DDVDALAQ----AGAAIIAVDGTA---RQRP---------VAVEALLARIHHHHLLTMADCSSVDDGLACQRLGADIIGT 155 (232)
T ss_dssp HHHHHHHH----HTCSEEEEECCS---SCCS---------SCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHH----cCCCEEEECccc---cCCH---------HHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhCCCCEEEE
Confidence 34444444 598888654321 1111 34667777778889999999999999988877 6999854
Q ss_pred cCC--------ccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 113 PAF--------LCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 113 gs~--------~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
..+ .-.++++++++.+.+.||+-.-|.. |.+++..+.+ .|..-+++
T Consensus 156 ~~~g~t~~~~~~~~~~~~i~~l~~~~ipvIA~GGI~-t~~d~~~~~~----~GadgV~V 209 (232)
T 3igs_A 156 TMSGYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYN-SPALAAEAIR----YGAWAVTV 209 (232)
T ss_dssp TTTTSSSSSCCSSCCHHHHHHHHHTTCCEEEESCCC-SHHHHHHHHH----TTCSEEEE
T ss_pred cCccCCCCCCCCCCCHHHHHHHHhcCCcEEEECCCC-CHHHHHHHHH----cCCCEEEE
Confidence 322 2357788998877699999999998 9999888653 47654544
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.12 Score=47.19 Aligned_cols=182 Identities=9% Similarity=0.016 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-h
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-V 106 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~ 106 (290)
+.+..++++++|.+ +|++.|-..+|.. |...++ ++ +....++.+.+..++++..=.-+.+.++...+ .
T Consensus 28 ~~e~k~~i~~~L~~----~Gv~~IE~g~~~~-~~~~~~----~~--d~~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~aG 96 (302)
T 2ftp_A 28 EVADKIRLVDDLSA----AGLDYIEVGSFVS-PKWVPQ----MA--GSAEVFAGIRQRPGVTYAALAPNLKGFEAALESG 96 (302)
T ss_dssp CHHHHHHHHHHHHH----TTCSEEEEEECSC-TTTCGG----GT--THHHHHHHSCCCTTSEEEEECCSHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHH----cCcCEEEECCCcC-cccccc----cc--CHHHHHHHhhhcCCCEEEEEeCCHHHHHHHHhCC
Confidence 56666777776665 6999887766542 332222 11 12233344444467777654446666666655 5
Q ss_pred cceecc--cCCccC-----------C----HHHHHHHHhcCCeEEEeCCC--------CCCHHHHHHHHHHHHHcCCCcE
Q 022892 107 ADIIQI--PAFLCR-----------Q----TDLLVAAAKTGKIINIKKGQ--------FCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 107 ~d~~kI--gs~~~~-----------n----~~lL~~~a~~~~PVilstG~--------~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
++.+-| ++.+.. | .+.++.+-+.|+.|-..-++ -.+++++.+.++.+.+.|-+.|
T Consensus 97 ~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i 176 (302)
T 2ftp_A 97 VKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEV 176 (302)
T ss_dssp CCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEE
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 776654 333321 2 23445556678888422111 1378999999998889999888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
.|+.... +-.......-+..+++ . ++|+++ +.|-. +.+...-+.+|+.+||+ .|
T Consensus 177 ~l~DT~G---~~~P~~~~~lv~~l~~~~~~~~l~~-H~Hn~------------------~Gla~An~laAv~aGa~--~v 232 (302)
T 2ftp_A 177 SLGDTIG---VGTAGATRRLIEAVASEVPRERLAG-HFHDT------------------YGQALANIYASLLEGIA--VF 232 (302)
T ss_dssp EEEESSS---CCCHHHHHHHHHHHTTTSCGGGEEE-EEBCT------------------TSCHHHHHHHHHHTTCC--EE
T ss_pred EEeCCCC---CcCHHHHHHHHHHHHHhCCCCeEEE-EeCCC------------------ccHHHHHHHHHHHhCCC--EE
Confidence 8875443 2222233456677776 6 689999 76753 12235567789999998 78
Q ss_pred eeeCC
Q 022892 240 EVHDD 244 (290)
Q Consensus 240 EkH~t 244 (290)
+.-+.
T Consensus 233 d~tv~ 237 (302)
T 2ftp_A 233 DSSVA 237 (302)
T ss_dssp EEBGG
T ss_pred Eeccc
Confidence 87654
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.28 Score=45.21 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=115.1
Q ss_pred hhcCCCCeEEEEccCCc------------cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH
Q 022892 10 QLKAAEPFFLLAGPNVI------------ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK 77 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsi------------en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~ 77 (290)
.++.+.++.+|.|-.-+ .+.+..++.|+++++ .||+++=-.. . ......++.++
T Consensus 5 ~~~~~~~~~iIGEriNvTg~~sf~~~~~~~~~~~a~~~A~~~v~----~GAdiIDIg~-g---------~~~v~~~eem~ 70 (300)
T 3k13_A 5 EVKPEINFVNIGERCNVAGSRKFLRLVNEKKYDEALSIARQQVE----DGALVIDVNM-D---------DGLLDARTEMT 70 (300)
T ss_dssp ----CTTCEEEEEEEETTTCHHHHHHHHTTCHHHHHHHHHHHHH----TTCSEEEEEC-C---------CTTSCHHHHHH
T ss_pred eeCCCCCcEEEEEeccCCCCHHHHHHHhcCCHHHHHHHHHHHHH----CCCCEEEECC-C---------CCCCCHHHHHH
Confidence 45677888888855333 135667777777776 5999875543 1 11111245566
Q ss_pred HHHHHHH----hcCCcEEEeecCcccHHHHhh---hccee-cccCCccC-CH-HHHHHHHhcCCeEEEeC----CCCCCH
Q 022892 78 ILEKVKI----AYDIPIVTDVHETVQCEEVGK---VADII-QIPAFLCR-QT-DLLVAAAKTGKIINIKK----GQFCAS 143 (290)
Q Consensus 78 ~L~~~~~----~~Gi~~~s~~~d~~~~~~l~~---~~d~~-kIgs~~~~-n~-~lL~~~a~~~~PVilst----G~~~tl 143 (290)
++..+.+ ..++|+.-+-++++.++...+ ..+++ -|...+-. ++ .++..+++.+.||++-. |+.-|+
T Consensus 71 rvv~~i~~~~~~~~vpisIDT~~~~V~eaaL~~~~Ga~iINdIs~~~~d~~~~~~~~l~a~~ga~vV~mh~d~~G~p~t~ 150 (300)
T 3k13_A 71 TFLNLIMSEPEIARVPVMIDSSKWEVIEAGLKCLQGKSIVNSISLKEGEEVFLEHARIIKQYGAATVVMAFDEKGQADTA 150 (300)
T ss_dssp HHHHHHHTCHHHHTSCEEEECSCHHHHHHHHHHCSSCCEEEEECSTTCHHHHHHHHHHHHHHTCEEEEESEETTEECCSH
T ss_pred HHHHHHHHhhhcCCCeEEEeCCCHHHHHHHHHhcCCCCEEEeCCcccCChhHHHHHHHHHHhCCeEEEEeeCCCCCCCCH
Confidence 6555443 479999999999998888665 24433 22222111 12 57788899999999864 565577
Q ss_pred HHHHHH----HHHH-HHcCCC-cEEEEeecCC-CCCCCCC---CC---chhHHHHHh-c-CCCEEEeCCCCCCCCCCCcc
Q 022892 144 SVMVNS----AEKV-RLAGNP-NVMVCERGTM-FGYNDLI---VD---PRNLEWMRE-A-NCPVVADVTHSLQQPAGKKL 208 (290)
Q Consensus 144 ~e~~~A----ve~i-~~~Gn~-~i~L~~~gs~-~~y~~~~---~d---L~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~ 208 (290)
++-... ++.+ .+.|-+ +=+++..|.. ++....+ -| |+++..+++ + ++|+.+-.|
T Consensus 151 ~~~~~i~~r~~~~~~~~~Gi~~~~IilDPgig~~gk~~~~~~~~~~~~l~~l~~lk~~lPg~pvl~G~S----------- 219 (300)
T 3k13_A 151 ARKIEVCERAYRLLVDKVGFNPHDIIFDPNVLAVATGIEEHNNYAVDFIEATGWIRKNLPGAHVSGGVS----------- 219 (300)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCGGGEEEECCCCCCSSSCGGGTTHHHHHHHHHHHHHHHSTTCEECCBGG-----------
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCccCCChHHhhHHHHHHHHHHHHHHHhCCCCCEEEEEC-----------
Confidence 664333 3333 566753 3467788874 4433221 13 355666674 6 888854111
Q ss_pred CCCCccCCCC------cccHHHH-HHHHHHcCCCEEEE
Q 022892 209 DGGGVASGGL------RELIPCI-ARTAIAVGVDGVFM 239 (290)
Q Consensus 209 ~~~~~~~~g~------~~~~~~~-a~aAva~GA~G~~I 239 (290)
+.|.|. |+.+..+ ...|+..|.+..++
T Consensus 220 ----nkSfglp~~~~~R~~~n~~fl~~ai~~Gld~~Iv 253 (300)
T 3k13_A 220 ----NLSFSFRGNNYIREAMHAVFLYHAIQQGMDMGIV 253 (300)
T ss_dssp ----GGGGGGTTCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ----cccccCCCCcchhHHHHHHHHHHHHHcCCCEEec
Confidence 222232 4444443 33578899996554
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.38 Score=44.76 Aligned_cols=186 Identities=12% Similarity=0.096 Sum_probs=110.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEEe-ec---CcccHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVTD-VH---ETVQCEE 102 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s~-~~---d~~~~~~ 102 (290)
+.+..++++++|.+ +|++.|=..+-+--|-+++. + ++.....++.+++..+. .++++..= .. ..+.++.
T Consensus 28 ~~e~k~~i~~~L~~----~Gvd~IEvG~~~g~p~ssp~-~-g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~ 101 (345)
T 1nvm_A 28 TLDDVRAIARALDK----AKVDSIEVAHGDGLQGSSFN-Y-GFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKN 101 (345)
T ss_dssp CHHHHHHHHHHHHH----HTCSEEECSCTTSTTCCBTT-T-BCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHH
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEecCCCCCCCCCc-c-cCCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHH
Confidence 67788899999987 49998876411000122222 1 22223455666666544 34554432 11 2344555
Q ss_pred Hhh-hcceecccCCcc---CC-HHHHHHHHhcCCeEEEeC--CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC
Q 022892 103 VGK-VADIIQIPAFLC---RQ-TDLLVAAAKTGKIINIKK--GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL 175 (290)
Q Consensus 103 l~~-~~d~~kIgs~~~---~n-~~lL~~~a~~~~PVilst--G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~ 175 (290)
..+ .+|.+-|.- .+ .+ .+.++++-+.|+.|.+.- ....+++.+...++.+...|-..|.|+.-... ..|.
T Consensus 102 a~~aGvd~v~I~~-~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~-~~P~- 178 (345)
T 1nvm_A 102 AYQAGARVVRVAT-HCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGA-MSMN- 178 (345)
T ss_dssp HHHHTCCEEEEEE-ETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEECTTCC-CCHH-
T ss_pred HHhCCcCEEEEEE-eccHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCc-cCHH-
Confidence 544 588777752 22 12 355566667788776653 54448899999999998888876666554332 1222
Q ss_pred CCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 176 IVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 176 ~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.+ ..-+..+++ + ++||++ +.|-. +.+...-+.+|+.+||+ .++.-..
T Consensus 179 ~v-~~lv~~l~~~~~~~~pi~~-H~Hn~------------------~G~avAn~laA~~aGa~--~vd~tv~ 228 (345)
T 1nvm_A 179 DI-RDRMRAFKAVLKPETQVGM-HAHHN------------------LSLGVANSIVAVEEGCD--RVDASLA 228 (345)
T ss_dssp HH-HHHHHHHHHHSCTTSEEEE-ECBCT------------------TSCHHHHHHHHHHTTCC--EEEEBGG
T ss_pred HH-HHHHHHHHHhcCCCceEEE-EECCC------------------ccHHHHHHHHHHHcCCC--EEEecch
Confidence 11 144666777 7 799999 77763 22335567789999998 7776653
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.13 Score=47.44 Aligned_cols=139 Identities=14% Similarity=0.064 Sum_probs=94.5
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..|++..++-+..++-++||.-++..+++ .++.+.+++..+.+ ...|.| .++.- |++|+...++.|..
T Consensus 12 ~~lr~l~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vs~~s~a~-------~~~G~p---D~~~v-t~~em~~~~~~I~r 80 (298)
T 3eoo_A 12 AKFRAAVAAEQPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAA-------NSLGIP---DLGIS-TMDDVLVDANRITN 80 (298)
T ss_dssp HHHHHHHHHSSSEEEEECSSHHHHHHHHHHTCSCEEECHHHHHH-------HTTCCC---SSSCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHHH-------HhcCCC---CCCCC-CHHHHHHHHHHHHh
Confidence 45677777778888899999999999887 69999999866554 245766 56665 99999988887754
Q ss_pred cCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 156 AGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 156 ~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
. .++||++|-+.+- |..+.+...++.-+..||.
T Consensus 81 ~-------------------------------~~~PviaD~d~Gy----------------g~~~~v~~~v~~l~~aGaa 113 (298)
T 3eoo_A 81 A-------------------------------TNLPLLVDIDTGW----------------GGAFNIARTIRSFIKAGVG 113 (298)
T ss_dssp H-------------------------------CCSCEEEECTTCS----------------SSHHHHHHHHHHHHHTTCS
T ss_pred h-------------------------------cCCeEEEECCCCC----------------CCHHHHHHHHHHHHHhCCe
Confidence 2 1368999988762 3233333444555678999
Q ss_pred EEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 022892 236 GVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 236 G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~l 275 (290)
|+-||-...|.| |-|...-..-..+++++.|+.+..+.
T Consensus 114 gv~iEDq~~~k~--cGh~~gk~l~~~~e~~~ri~Aa~~A~ 151 (298)
T 3eoo_A 114 AVHLEDQVGQKR--CGHRPGKECVPAGEMVDRIKAAVDAR 151 (298)
T ss_dssp EEEEECBCCCCC--TTCCCCCCBCCHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCcc--cCCCCCCeecCHHHHHHHHHHHHHhc
Confidence 999998765544 32322222234456667777666654
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.3 Score=45.97 Aligned_cols=193 Identities=14% Similarity=0.082 Sum_probs=103.2
Q ss_pred CchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHH
Q 022892 2 DPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEK 81 (290)
Q Consensus 2 ~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~ 81 (290)
|-+|.|...++-+-| ++.|....+-+ .++|..+ |.+-|+.++-+ . +..++.++++++
T Consensus 33 dl~t~l~~~~~l~~P-ii~apM~~vt~----~~lA~av---A~~GGlgii~~-~--------------~s~e~~~~~I~~ 89 (361)
T 3khj_A 33 SLETKLTKNVSLKIP-LISSAMDTVTE----HLMAVGM---ARLGGIGIIHK-N--------------MDMESQVNEVLK 89 (361)
T ss_dssp CCCEESSSSCEESSS-EEECSSTTTCS----HHHHHHH---HHTTCEEEECS-S--------------SCHHHHHHHHHH
T ss_pred cCceecccccccCCC-EEeecCCCCCc----HHHHHHH---HHcCCCeEEec-C--------------CCHHHHHHHHHH
Confidence 334555545554554 56665554322 2444433 33345655532 1 113566777888
Q ss_pred HHHhcCCcEEEeecC--cccHHHHhh-hcceecccCCccCC---HHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 82 VKIAYDIPIVTDVHE--TVQCEEVGK-VADIIQIPAFLCRQ---TDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 82 ~~~~~Gi~~~s~~~d--~~~~~~l~~-~~d~~kIgs~~~~n---~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
+.+...+++..-+.- .+.++.+.+ .+|++-|.+..-.. .+.++++.+ .+.||++++- .|.++++.+.
T Consensus 90 vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v--~t~e~A~~l~---- 163 (361)
T 3khj_A 90 VKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNV--VTEEATKELI---- 163 (361)
T ss_dssp HHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEE--CSHHHHHHHH----
T ss_pred HHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccC--CCHHHHHHHH----
Confidence 777667777766543 345555545 68988774333222 345565544 4899999654 3687766554
Q ss_pred HcCCCcEEEE-----eecCCCCCCCCCCCchhHHHHHh----cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHH
Q 022892 155 LAGNPNVMVC-----ERGTMFGYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCI 225 (290)
Q Consensus 155 ~~Gn~~i~L~-----~~gs~~~y~~~~~dL~~i~~lk~----~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (290)
..|-+-|.+- .|++..-.....-++..+..+++ .++||+.|.- .+. ..-
T Consensus 164 ~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GG--------------------I~~--~~d 221 (361)
T 3khj_A 164 ENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGG--------------------IRY--SGD 221 (361)
T ss_dssp HTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESC--------------------CCS--HHH
T ss_pred HcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECC--------------------CCC--HHH
Confidence 4676555541 12211000000123455555532 5899987522 111 223
Q ss_pred HHHHHHcCCCEEEEeeeCCC
Q 022892 226 ARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 226 a~aAva~GA~G~~IEkH~t~ 245 (290)
+..|+++||+|+++=+-|.-
T Consensus 222 i~kala~GAd~V~vGs~~~~ 241 (361)
T 3khj_A 222 IGKALAVGASSVMIGSILAG 241 (361)
T ss_dssp HHHHHHHTCSEEEESTTTTT
T ss_pred HHHHHHcCCCEEEEChhhhc
Confidence 44678899999998765543
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.089 Score=48.50 Aligned_cols=118 Identities=12% Similarity=0.116 Sum_probs=72.2
Q ss_pred HHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec----Cc-------c----cHHHHhh-
Q 022892 42 ISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH----ET-------V----QCEEVGK- 105 (290)
Q Consensus 42 ~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~----d~-------~----~~~~l~~- 105 (290)
.+.++|+++|+.-.|.- +- .......+.+..+.+.|+++|++++.+++ .. + .+..+.+
T Consensus 116 ~a~~~GAdaV~vlv~~~-~d-----~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~l 189 (304)
T 1to3_A 116 AVKRDGAKALKLLVLWR-SD-----EDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDS 189 (304)
T ss_dssp HHHHTTCCEEEEEEEEC-TT-----SCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCEEEEEEEcC-CC-----ccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHc
Confidence 34447999998765541 00 00000125577788999999999999986 21 1 1333334
Q ss_pred hcceecccCC-cc-CCH-HHHHHHHh----cCCe-EEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 106 VADIIQIPAF-LC-RQT-DLLVAAAK----TGKI-INIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 106 ~~d~~kIgs~-~~-~n~-~lL~~~a~----~~~P-VilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
.+||+|++.. +- ... .+.+.+.. ++.| |+++=|. +.+++.+.+..+...|- ..+++=|..
T Consensus 190 GaD~iKv~~~~~~~g~~~~~~~vv~~~~~~~~~P~Vv~aGG~--~~~~~~~~~~~a~~aGa-~Gv~vGRaI 257 (304)
T 1to3_A 190 GADLYKVEMPLYGKGARSDLLTASQRLNGHINMPWVILSSGV--DEKLFPRAVRVAMEAGA-SGFLAGRAV 257 (304)
T ss_dssp SCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEECCTTS--CTTTHHHHHHHHHHTTC-CEEEESHHH
T ss_pred CCCEEEeCCCcCCCCCHHHHHHHHHhccccCCCCeEEEecCC--CHHHHHHHHHHHHHcCC-eEEEEehHH
Confidence 5999999884 11 122 33333444 6999 8888887 57676666666666664 566655554
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=95.58 E-value=0.15 Score=46.08 Aligned_cols=82 Identities=12% Similarity=0.021 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccC----CHHHHHHHHh---cCCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCR----QTDLLVAAAK---TGKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~----n~~lL~~~a~---~~~PVilstG~~~tl~ 144 (290)
.+.++.|.++++++|+.++.|++|.+.++...+ ..+++-|-.|++. +...-..++. .+..++-..|.. |.+
T Consensus 139 ~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a~iIGINNRnL~tf~vdl~~t~~L~~~ip~~~~~VsESGI~-t~~ 217 (258)
T 4a29_A 139 ERELESLLEYARSYGMEPLILINDENDLDIALRIGARFIGIMSRDFETGEINKENQRKLISMIPSNVVKVAKLGIS-ERN 217 (258)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTTCSEEEECSBCTTTCCBCHHHHHHHHTTSCTTSEEEEEESSC-CHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCCCcEEEEeCCCccccccCHHHHHHHHhhCCCCCEEEEcCCCC-CHH
Confidence 467999999999999999999999999998777 6999999888873 3222233332 256677778888 888
Q ss_pred HHHHHHHHHHHcCCC
Q 022892 145 VMVNSAEKVRLAGNP 159 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~ 159 (290)
++... ...|-+
T Consensus 218 dv~~l----~~~G~~ 228 (258)
T 4a29_A 218 EIEEL----RKLGVN 228 (258)
T ss_dssp HHHHH----HHTTCC
T ss_pred HHHHH----HHCCCC
Confidence 87753 445643
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.15 Score=46.31 Aligned_cols=182 Identities=14% Similarity=0.127 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-h
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-V 106 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~ 106 (290)
+.+..++++++|. ++|++.|-..+|.. ++-.|. +...++.++.+++..++++..=.-+.+.++.+.+ .
T Consensus 24 ~~e~k~~i~~~L~----~~Gv~~IE~g~~~~-~~~~p~------~~~~~e~~~~i~~~~~~~v~~l~~n~~~i~~a~~~G 92 (295)
T 1ydn_A 24 PTADKIALINRLS----DCGYARIEATSFVS-PKWVPQ------LADSREVMAGIRRADGVRYSVLVPNMKGYEAAAAAH 92 (295)
T ss_dssp CHHHHHHHHHHHT----TTTCSEEEEEECSC-TTTCGG------GTTHHHHHHHSCCCSSSEEEEECSSHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH----HcCcCEEEEccCcC-cccccc------ccCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHCC
Confidence 4455555555554 57999887765542 221110 1234445555544458887654456666666555 5
Q ss_pred cceeccc--CC--------cc---CCHHH----HHHHHhcCCeEE--EeCC------CCCCHHHHHHHHHHHHHcCCCcE
Q 022892 107 ADIIQIP--AF--------LC---RQTDL----LVAAAKTGKIIN--IKKG------QFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 107 ~d~~kIg--s~--------~~---~n~~l----L~~~a~~~~PVi--lstG------~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
++.+-|. +. .+ .|.+. ++.+-+.|.+|- |++- ...+++++...++.+.+.|-..+
T Consensus 93 ~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i 172 (295)
T 1ydn_A 93 ADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEV 172 (295)
T ss_dssp CSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEE
T ss_pred CCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 7766554 22 11 13333 455567899987 5442 22389999999998889999888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cC-CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~-~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
.|+.... +-.......-+..+++ .. +|+++ +.|-. .| +...-+.+|+.+||+ .|
T Consensus 173 ~l~Dt~G---~~~P~~~~~lv~~l~~~~~~~~l~~-H~Hn~---------------~G---la~an~l~Ai~aG~~--~v 228 (295)
T 1ydn_A 173 SLGDTIG---RGTPDTVAAMLDAVLAIAPAHSLAG-HYHDT---------------GG---RALDNIRVSLEKGLR--VF 228 (295)
T ss_dssp EEEETTS---CCCHHHHHHHHHHHHTTSCGGGEEE-EEBCT---------------TS---CHHHHHHHHHHHTCC--EE
T ss_pred EecCCCC---CcCHHHHHHHHHHHHHhCCCCeEEE-EECCC---------------cc---hHHHHHHHHHHhCCC--EE
Confidence 8886433 2222223456667776 55 78988 66642 12 224456788999998 78
Q ss_pred eeeCC
Q 022892 240 EVHDD 244 (290)
Q Consensus 240 EkH~t 244 (290)
+.-..
T Consensus 229 d~sv~ 233 (295)
T 1ydn_A 229 DASVG 233 (295)
T ss_dssp EEBTT
T ss_pred Eeccc
Confidence 87653
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.18 Score=46.35 Aligned_cols=181 Identities=10% Similarity=0.057 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-h
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-V 106 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~ 106 (290)
+.+..++++++|.+ +|++.|=..+|.. |+..|. +. +....++...+..+..+..=+-+...++...+ .
T Consensus 26 ~~e~k~~i~~~L~~----~Gv~~IE~g~~~~-~~~~p~----~~--d~~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~~g 94 (307)
T 1ydo_A 26 ATEDKITWINQLSR----TGLSYIEITSFVH-PKWIPA----LR--DAIDVAKGIDREKGVTYAALVPNQRGLENALEGG 94 (307)
T ss_dssp CHHHHHHHHHHHHT----TTCSEEEEEECSC-TTTCGG----GT--THHHHHHHSCCCTTCEEEEECCSHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH----cCCCEEEECCCcC-cccccc----cC--CHHHHHHHhhhcCCCeEEEEeCCHHhHHHHHhCC
Confidence 67888999999877 5999887766542 332221 11 11122222222345555443345555665555 5
Q ss_pred cceecccCC--cc---CC------------HHHHHHHHhcCCeEE--EeC-------CCCCCHHHHHHHHHHHHHcCCCc
Q 022892 107 ADIIQIPAF--LC---RQ------------TDLLVAAAKTGKIIN--IKK-------GQFCASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 107 ~d~~kIgs~--~~---~n------------~~lL~~~a~~~~PVi--lst-------G~~~tl~e~~~Ave~i~~~Gn~~ 160 (290)
++.+-|-.. +. .| .+.++++-+.|+.|- ++. |.. +++.+.+.++.+.+.|-..
T Consensus 95 ~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ga~~ 173 (307)
T 1ydo_A 95 INEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDV-PIEQVIRLSEALFEFGISE 173 (307)
T ss_dssp CSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCC-CHHHHHHHHHHHHHHTCSC
T ss_pred cCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCC-CHHHHHHHHHHHHhcCCCE
Confidence 666554321 21 11 244566667888874 333 223 8999999999999999988
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
|.|+..... ..|.. + ..-+..+++ + ++|+++ +.|-. +.+...-+.+|+.+||+ .
T Consensus 174 i~l~DT~G~-~~P~~-v-~~lv~~l~~~~~~~~l~~-H~Hnd------------------~Gla~AN~laAv~aGa~--~ 229 (307)
T 1ydo_A 174 LSLGDTIGA-ANPAQ-V-ETVLEALLARFPANQIAL-HFHDT------------------RGTALANMVTALQMGIT--V 229 (307)
T ss_dssp EEEECSSCC-CCHHH-H-HHHHHHHHTTSCGGGEEE-ECBGG------------------GSCHHHHHHHHHHHTCC--E
T ss_pred EEEcCCCCC-cCHHH-H-HHHHHHHHHhCCCCeEEE-EECCC------------------CchHHHHHHHHHHhCCC--E
Confidence 888876542 12221 1 245566776 5 588999 77753 22335567789999998 7
Q ss_pred EeeeCC
Q 022892 239 MEVHDD 244 (290)
Q Consensus 239 IEkH~t 244 (290)
|+.=+.
T Consensus 230 vd~tv~ 235 (307)
T 1ydo_A 230 FDGSAG 235 (307)
T ss_dssp EEEBGG
T ss_pred EEEccc
Confidence 887554
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.24 Score=46.39 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecC-----cccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHE-----TVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVM 146 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d-----~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~ 146 (290)
....+.+...|+++|+++..-.+. .+.++.+.+ .+|++.+..... ..++++.+-+.++||+.+.. |+++.
T Consensus 83 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~-~~~~i~~~~~~g~~v~~~v~---t~~~a 158 (369)
T 3bw2_A 83 EVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVP-DREVIARLRRAGTLTLVTAT---TPEEA 158 (369)
T ss_dssp HHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCC-CHHHHHHHHHTTCEEEEEES---SHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCC-cHHHHHHHHHCCCeEEEECC---CHHHH
Confidence 355667888999999997542221 234555555 589888876543 45777888778999998753 78776
Q ss_pred HHHHHHHHHcCCCcEEEEee-------cCCCC-CCCCC--CC-chhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCcc
Q 022892 147 VNSAEKVRLAGNPNVMVCER-------GTMFG-YNDLI--VD-PRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVA 214 (290)
Q Consensus 147 ~~Ave~i~~~Gn~~i~L~~~-------gs~~~-y~~~~--~d-L~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~ 214 (290)
..+. ..|-+ .++++. |+..+ ..... .+ +..++.+++ .++||+.+..=.
T Consensus 159 ~~a~----~~GaD-~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~--------------- 218 (369)
T 3bw2_A 159 RAVE----AAGAD-AVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIM--------------- 218 (369)
T ss_dssp HHHH----HTTCS-EEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCC---------------
T ss_pred HHHH----HcCCC-EEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCC---------------
Confidence 6543 35654 444532 22100 00000 23 566777776 789998743221
Q ss_pred CCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 215 SGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 215 ~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
. +.-+..++++||+|+++=+-+.
T Consensus 219 --~-----~~~~~~~l~~GAd~V~vGs~~~ 241 (369)
T 3bw2_A 219 --R-----GGQIAAVLAAGADAAQLGTAFL 241 (369)
T ss_dssp --S-----HHHHHHHHHTTCSEEEESHHHH
T ss_pred --C-----HHHHHHHHHcCCCEEEEChHHh
Confidence 1 3445567889999999876553
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.17 Score=46.19 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEEeecCcccHHHHhh-
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVTDVHETVQCEEVGK- 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s~~~d~~~~~~l~~- 105 (290)
+.+..++++++|.+ +|++.|-..+|.. |+..|. ++ +. .++.+...+. |+.+..-..+...++.+.+
T Consensus 25 ~~e~k~~i~~~L~~----~Gv~~IE~g~~~~-~~~~p~----~~--d~-~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~a 92 (298)
T 2cw6_A 25 STPVKIKLIDMLSE----AGLSVIETTSFVS-PKWVPQ----MG--DH-TEVLKGIQKFPGINYPVLTPNLKGFEAAVAA 92 (298)
T ss_dssp CHHHHHHHHHHHHH----TTCSEECCEECCC-TTTCGG----GT--TH-HHHHHHSCCCTTCBCCEECCSHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH----cCcCEEEECCCcC-cccccc----cC--CH-HHHHHHHhhCCCCEEEEEcCCHHhHHHHHHC
Confidence 56777888888876 5999987776652 322221 01 11 1222222222 6555544456666666655
Q ss_pred hcceecccCC--ccC-----------C----HHHHHHHHhcCCeEEEeC---------CCCCCHHHHHHHHHHHHHcCCC
Q 022892 106 VADIIQIPAF--LCR-----------Q----TDLLVAAAKTGKIINIKK---------GQFCASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 106 ~~d~~kIgs~--~~~-----------n----~~lL~~~a~~~~PVilst---------G~~~tl~e~~~Ave~i~~~Gn~ 159 (290)
.++.+.|-.. +.. + .+.++++-+.|++|-+.- |.. +++++.+.++.+.+.|-.
T Consensus 93 g~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ga~ 171 (298)
T 2cw6_A 93 GAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKI-SPAKVAEVTKKFYSMGCY 171 (298)
T ss_dssp TCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSC-CHHHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCC-CHHHHHHHHHHHHHcCCC
Confidence 5776665322 110 0 123455667888885322 233 899999999999999998
Q ss_pred cEEEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 160 NVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 160 ~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
.|.|+..... ..|.. + ..-+..+++ + ++|+++ +.|-. .| +...-+.+|+.+||+
T Consensus 172 ~i~l~DT~G~-~~P~~-~-~~lv~~l~~~~~~~~i~~-H~Hn~---------------~G---la~An~laA~~aGa~-- 227 (298)
T 2cw6_A 172 EISLGDTIGV-GTPGI-M-KDMLSAVMQEVPLAALAV-HCHDT---------------YG---QALANTLMALQMGVS-- 227 (298)
T ss_dssp EEEEEETTSC-CCHHH-H-HHHHHHHHHHSCGGGEEE-EEBCT---------------TS---CHHHHHHHHHHTTCC--
T ss_pred EEEecCCCCC-cCHHH-H-HHHHHHHHHhCCCCeEEE-EECCC---------------Cc---hHHHHHHHHHHhCCC--
Confidence 8888876542 12221 1 245666676 5 588999 77753 12 224456789999998
Q ss_pred EEeeeC
Q 022892 238 FMEVHD 243 (290)
Q Consensus 238 ~IEkH~ 243 (290)
.++.-.
T Consensus 228 ~vd~tv 233 (298)
T 2cw6_A 228 VVDSSV 233 (298)
T ss_dssp EEEEBT
T ss_pred EEEeec
Confidence 777744
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.19 Score=44.21 Aligned_cols=130 Identities=12% Similarity=0.110 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEE-EeecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIV-TDVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~-s~~~d~~~~~~l~~ 105 (290)
+.+..++.++++.+ .|+++|-.. ++ . ..+++.++++++++. +.+- -++++.++++...+
T Consensus 27 ~~~~~~~~~~al~~----gGv~~iel~-~k-----------~---~~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~ 87 (224)
T 1vhc_A 27 NADDILPLADTLAK----NGLSVAEIT-FR-----------S---EAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKS 87 (224)
T ss_dssp SGGGHHHHHHHHHH----TTCCEEEEE-TT-----------S---TTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEe-cc-----------C---chHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHH
Confidence 44567788888877 589876543 11 1 234566777777773 3332 26888899998877
Q ss_pred -hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC-CchhHH
Q 022892 106 -VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV-DPRNLE 183 (290)
Q Consensus 106 -~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~-dL~~i~ 183 (290)
.+|++-.|. ++.+.++.+-+.+.|+++ |.. |++|+..|. ..|-+.+.+ || ...+ -+..+.
T Consensus 88 aGAd~v~~p~---~d~~v~~~ar~~g~~~i~--Gv~-t~~e~~~A~----~~Gad~vk~------Fp--a~~~gG~~~lk 149 (224)
T 1vhc_A 88 SGADFVVTPG---LNPKIVKLCQDLNFPITP--GVN-NPMAIEIAL----EMGISAVKF------FP--AEASGGVKMIK 149 (224)
T ss_dssp HTCSEEECSS---CCHHHHHHHHHTTCCEEC--EEC-SHHHHHHHH----HTTCCEEEE------TT--TTTTTHHHHHH
T ss_pred CCCCEEEECC---CCHHHHHHHHHhCCCEEe--ccC-CHHHHHHHH----HCCCCEEEE------ee--CccccCHHHHH
Confidence 699997774 567877888889999988 666 999998875 367766666 33 2222 356677
Q ss_pred HHHh-c-CCCEEE
Q 022892 184 WMRE-A-NCPVVA 194 (290)
Q Consensus 184 ~lk~-~-~~pV~~ 194 (290)
.++. + ++|++.
T Consensus 150 ~l~~~~~~ipvva 162 (224)
T 1vhc_A 150 ALLGPYAQLQIMP 162 (224)
T ss_dssp HHHTTTTTCEEEE
T ss_pred HHHhhCCCCeEEE
Confidence 7777 6 788854
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.071 Score=49.18 Aligned_cols=171 Identities=15% Similarity=0.140 Sum_probs=99.3
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcceecccCCcc
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD--VHETVQCEEVGK-VADIIQIPAFLC 117 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~ 117 (290)
+.+++.|++++.+=. . .-|-...|+|......+++++++++...||++.- ..+...++.+.+ .+|++ -.+...
T Consensus 35 ~~ye~~GA~~lsvLe-~--~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i~~ide~qil~aaGAD~I-d~s~~~ 110 (297)
T 4adt_A 35 KIAEKAGAIGVMILE-N--IPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILEELKVDML-DESEVL 110 (297)
T ss_dssp HHHHHHTCSEEEECC-C--CC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEETTCHHHHHHHHHTTCSEE-EEETTS
T ss_pred HHHHHcCCCEEEEec-C--CCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccCCcHHHHHHHHHcCCCEE-EcCCCC
Confidence 344557999987632 1 1111122444221346888999999999999964 333556666655 68888 333334
Q ss_pred CCHHHHHHHHh--cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CC----------------------
Q 022892 118 RQTDLLVAAAK--TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GY---------------------- 172 (290)
Q Consensus 118 ~n~~lL~~~a~--~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y---------------------- 172 (290)
+..++++++.+ .+.|+++. .. +.+|.+.+++ .|. +++-.+ |..+ +.
T Consensus 111 ~~~~li~~i~~~~~g~~vvv~--v~-~~~Ea~~a~~----~Ga-d~I~v~-g~~gTG~~~~~v~h~~~~~~eir~l~~~~ 181 (297)
T 4adt_A 111 TMADEYNHINKHKFKTPFVCG--CT-NLGEALRRIS----EGA-SMIRTK-GEAGTGNIIEAIKHIRTVNNEIKYLCSLD 181 (297)
T ss_dssp CCSCSSCCCCGGGCSSCEEEE--ES-SHHHHHHHHH----HTC-SEEEEC-CCTTSCCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHhcCCCCeEEEE--eC-CHHHHHHHHh----CCC-CEEEEC-CCcCCCchHHHHHHHHHhhhhhhhhcccc
Confidence 55567666666 67899884 45 8999888754 354 344444 2110 10
Q ss_pred --C------CCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 173 --N------DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 173 --~------~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
. ....++..+..+++ .++||++=+.=++ .. +.-+..+.++||+|+++=+.+
T Consensus 182 ~d~L~t~~~~~~~~~~ll~~i~~~~~iPVivvA~GGI---------------~t-----~~dv~~~~~~GAdgVlVGsai 241 (297)
T 4adt_A 182 ESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGI---------------AT-----PADAAMCMQLGMDGVFVGSGI 241 (297)
T ss_dssp TTTHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESCC---------------CS-----HHHHHHHHHTTCSCEEESHHH
T ss_pred ccccccccccCCCCHHHHHHHHHhcCCCeEEEecCCC---------------CC-----HHHHHHHHHcCCCEEEEhHHH
Confidence 0 01345666777776 6788862111111 01 334456678899999998776
Q ss_pred C
Q 022892 244 D 244 (290)
Q Consensus 244 t 244 (290)
.
T Consensus 242 ~ 242 (297)
T 4adt_A 242 F 242 (297)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.78 Score=39.58 Aligned_cols=170 Identities=14% Similarity=0.093 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-eecCcccHHHHhh-hc
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-DVHETVQCEEVGK-VA 107 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-~~~d~~~~~~l~~-~~ 107 (290)
+..++.++++.+ .|+++|=.. + +. ....+.+++..+ ..+.+-. ++++.+.++...+ .+
T Consensus 25 ~~~~~~~~~l~~----gGv~~iel~-~-----------k~---~~~~~~i~~~~~-~~~~~gag~vl~~d~~~~A~~~GA 84 (207)
T 2yw3_A 25 EDLLGLARVLEE----EGVGALEIT-L-----------RT---EKGLEALKALRK-SGLLLGAGTVRSPKEAEAALEAGA 84 (207)
T ss_dssp CCHHHHHHHHHH----TTCCEEEEE-C-----------SS---THHHHHHHHHTT-SSCEEEEESCCSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH----cCCCEEEEe-C-----------CC---hHHHHHHHHHhC-CCCEEEeCeEeeHHHHHHHHHcCC
Confidence 446777887776 588876432 1 11 123333443333 4444333 5777888888776 69
Q ss_pred ceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC-CchhHHHHH
Q 022892 108 DIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV-DPRNLEWMR 186 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~-dL~~i~~lk 186 (290)
|++-.|. .+.++.+.+...+.|+++. .. |++|+..|.+ .|-+.+.+ |+ ...+ -+..+..++
T Consensus 85 d~v~~~~---~d~~v~~~~~~~g~~~i~G--~~-t~~e~~~A~~----~Gad~v~~------fp--a~~~gG~~~lk~l~ 146 (207)
T 2yw3_A 85 AFLVSPG---LLEEVAALAQARGVPYLPG--VL-TPTEVERALA----LGLSALKF------FP--AEPFQGVRVLRAYA 146 (207)
T ss_dssp SEEEESS---CCHHHHHHHHHHTCCEEEE--EC-SHHHHHHHHH----TTCCEEEE------TT--TTTTTHHHHHHHHH
T ss_pred CEEEcCC---CCHHHHHHHHHhCCCEEec--CC-CHHHHHHHHH----CCCCEEEE------ec--CccccCHHHHHHHH
Confidence 9987774 4578888888889999884 55 8999988754 57766655 33 2223 345677777
Q ss_pred h-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHH
Q 022892 187 E-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEEL 264 (290)
Q Consensus 187 ~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~l 264 (290)
. + ++||+. . +|.. ..-+....++||+|+.+=+-++. -++++.++.
T Consensus 147 ~~~~~ipvva--i------------------GGI~---~~n~~~~l~aGa~~vavgSai~~----------~d~~~i~~~ 193 (207)
T 2yw3_A 147 EVFPEVRFLP--T------------------GGIK---EEHLPHYAALPNLLAVGGSWLLQ----------GNLEAVRAK 193 (207)
T ss_dssp HHCTTCEEEE--B------------------SSCC---GGGHHHHHTCSSBSCEEESGGGS----------SCHHHHHHH
T ss_pred hhCCCCcEEE--e------------------CCCC---HHHHHHHHhCCCcEEEEehhhhC----------CCHHHHHHH
Confidence 7 6 789864 1 1211 11233457889998888665543 245555555
Q ss_pred HHHHHH
Q 022892 265 LEELVA 270 (290)
Q Consensus 265 v~~ir~ 270 (290)
.+.+.+
T Consensus 194 a~~~~~ 199 (207)
T 2yw3_A 194 VRAAKA 199 (207)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.13 Score=50.50 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=85.6
Q ss_pred CCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEE
Q 022892 13 AAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIV 91 (290)
Q Consensus 13 ~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~ 91 (290)
.++++.+.|+.+.. ...++.|++|++ +|+++|...+-. +.. ...++.++++++++ +++++
T Consensus 216 ~~grL~v~aavG~~---~d~~~~a~~l~~----aG~d~I~id~a~-----------g~~-~~~~~~i~~ir~~~p~~~Vi 276 (496)
T 4fxs_A 216 EQGRLRVGAAVGAA---PGNEERVKALVE----AGVDVLLIDSSH-----------GHS-EGVLQRIRETRAAYPHLEII 276 (496)
T ss_dssp TTSCBCCEEECCSS---SCCHHHHHHHHH----TTCSEEEEECSC-----------TTS-HHHHHHHHHHHHHCTTCCEE
T ss_pred cccceeeeeeeccc---cchHHHHHHHHh----ccCceEEecccc-----------ccc-hHHHHHHHHHHHHCCCceEE
Confidence 34577888888763 235788888887 499998765321 111 45677788888888 88886
Q ss_pred E-eecCcccHHHHhh-hcceecccCC---c----------cCCHHHHHHHH----hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 92 T-DVHETVQCEEVGK-VADIIQIPAF---L----------CRQTDLLVAAA----KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 92 s-~~~d~~~~~~l~~-~~d~~kIgs~---~----------~~n~~lL~~~a----~~~~PVilstG~~~tl~e~~~Ave 151 (290)
. .+.+.+.+..+.+ .+|++++|.. . ..+..++.+++ +.+.|||-+-|.. +.+++..|+.
T Consensus 277 ~g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~-~~~di~kala 354 (496)
T 4fxs_A 277 GGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIR-FSGDISKAIA 354 (496)
T ss_dssp EEEECSHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCC-SHHHHHHHHH
T ss_pred EcccCcHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCC-CHHHHHHHHH
Confidence 6 7899999988888 7999998611 1 22444455444 4589999999999 9999998854
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.21 Score=44.37 Aligned_cols=111 Identities=12% Similarity=0.113 Sum_probs=73.9
Q ss_pred HHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee----------cCcccHHH----Hhh-hcc
Q 022892 44 TKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV----------HETVQCEE----VGK-VAD 108 (290)
Q Consensus 44 ~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~----------~d~~~~~~----l~~-~~d 108 (290)
.+.|++.|..+.+.+.+ + +. .+.+.++.+.+.|+++|++++.+. +++..+.. +.+ .+|
T Consensus 109 ~~~Ga~~v~~~l~~~~~---~--~~--~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad 181 (273)
T 2qjg_A 109 IRMGADAVSIHVNVGSD---E--DW--EAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGAD 181 (273)
T ss_dssp HHTTCSEEEEEEEETST---T--HH--HHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHcCCCEEEEEEecCCC---C--HH--HHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCC
Confidence 34699988554333211 0 10 012457778899999999999877 55544433 333 599
Q ss_pred eecccCCccCCHHHHHHHH-hcCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCCcEEE
Q 022892 109 IIQIPAFLCRQTDLLVAAA-KTGKIINIKKGQFC-ASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a-~~~~PVilstG~~~-tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
+++++- -.+.++++++. ..+.||+..-|... +.++....+..+...|-.-+.+
T Consensus 182 ~i~~~~--~~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~v 236 (273)
T 2qjg_A 182 IVKTSY--TGDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAV 236 (273)
T ss_dssp EEEECC--CSSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred EEEECC--CCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 999984 35788888876 57899999988874 3888777666666678754443
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.27 Score=43.24 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE-eecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT-DVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s-~~~d~~~~~~l~~ 105 (290)
+.+..++.++++++ .|+++|-.. ++ . ..+++.+++.++++ ++.+-. ++++.+.++...+
T Consensus 36 ~~~~~~~~~~al~~----gGv~~iel~-~k-----------~---~~~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~ 96 (225)
T 1mxs_A 36 REEDILPLADALAA----GGIRTLEVT-LR-----------S---QHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEA 96 (225)
T ss_dssp CGGGHHHHHHHHHH----TTCCEEEEE-SS-----------S---THHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----CCCCEEEEe-cC-----------C---ccHHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHH
Confidence 44567788888777 588876543 11 1 24556677777776 444332 6788888888877
Q ss_pred -hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC-CchhHH
Q 022892 106 -VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV-DPRNLE 183 (290)
Q Consensus 106 -~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~-dL~~i~ 183 (290)
..|++-.|. .+.+.++.....+.|++. |.. |++|+..|. ..|-+.+.+ || ...+ -+..+.
T Consensus 97 aGAd~v~~p~---~d~~v~~~~~~~g~~~i~--G~~-t~~e~~~A~----~~Gad~vk~------FP--a~~~~G~~~lk 158 (225)
T 1mxs_A 97 AGAQFVVTPG---ITEDILEAGVDSEIPLLP--GIS-TPSEIMMGY----ALGYRRFKL------FP--AEISGGVAAIK 158 (225)
T ss_dssp HTCSSEECSS---CCHHHHHHHHHCSSCEEC--EEC-SHHHHHHHH----TTTCCEEEE------TT--HHHHTHHHHHH
T ss_pred CCCCEEEeCC---CCHHHHHHHHHhCCCEEE--eeC-CHHHHHHHH----HCCCCEEEE------cc--CccccCHHHHH
Confidence 699998775 567888888889999987 665 999998875 467766666 33 2212 345566
Q ss_pred HHHh-c-CCCEEE
Q 022892 184 WMRE-A-NCPVVA 194 (290)
Q Consensus 184 ~lk~-~-~~pV~~ 194 (290)
.++. + ++|++.
T Consensus 159 ~i~~~~~~ipvva 171 (225)
T 1mxs_A 159 AFGGPFGDIRFCP 171 (225)
T ss_dssp HHHTTTTTCEEEE
T ss_pred HHHhhCCCCeEEE
Confidence 6666 5 788754
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=95.05 E-value=1.5 Score=37.75 Aligned_cols=159 Identities=13% Similarity=0.109 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee---c---------Ccc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV---H---------ETV 98 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~---~---------d~~ 98 (290)
...++|+.+.+ .|++.+-.. +...++++++..++|++.-. | ..+
T Consensus 37 ~~~~~a~~~~~----~G~~~i~~~--------------------~~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~ 92 (234)
T 1yxy_A 37 IMPLMAKAAQE----AGAVGIRAN--------------------SVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMT 92 (234)
T ss_dssp SHHHHHHHHHH----HTCSEEEEE--------------------SHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHH
T ss_pred hHHHHHHHHHH----CCCcEeecC--------------------CHHHHHHHHHhCCCCEEeeEcCCCCccccccCChHH
Confidence 34555555555 699877431 12345555666789986321 1 123
Q ss_pred cHHHHhh-hcceecccCCccCC------HHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEE-EEeecC
Q 022892 99 QCEEVGK-VADIIQIPAFLCRQ------TDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVM-VCERGT 168 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~~n------~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~-L~~~gs 168 (290)
.++.+.+ .+|++-++.....+ .++++.+.+. +++|+++.. |++|...+. ..|-+-+. .+.. .
T Consensus 93 ~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~---t~~ea~~a~----~~Gad~i~~~v~g-~ 164 (234)
T 1yxy_A 93 EVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADIS---TFDEGLVAH----QAGIDFVGTTLSG-Y 164 (234)
T ss_dssp HHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECS---SHHHHHHHH----HTTCSEEECTTTT-S
T ss_pred HHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCC---CHHHHHHHH----HcCCCEEeeeccc-c
Confidence 4555544 68888887765433 4677877766 889888653 788855543 35654331 1111 1
Q ss_pred CCCCC-CCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 169 MFGYN-DLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 169 ~~~y~-~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..+.. ....++..+..+++.++||+.+..=. . +.-+....++||+|+++=+-+
T Consensus 165 ~~~~~~~~~~~~~~i~~~~~~~ipvia~GGI~-----------------s-----~~~~~~~~~~Gad~v~vGsal 218 (234)
T 1yxy_A 165 TPYSRQEAGPDVALIEALCKAGIAVIAEGKIH-----------------S-----PEEAKKINDLGVAGIVVGGAI 218 (234)
T ss_dssp STTSCCSSSCCHHHHHHHHHTTCCEEEESCCC-----------------S-----HHHHHHHHTTCCSEEEECHHH
T ss_pred CCCCcCCCCCCHHHHHHHHhCCCCEEEECCCC-----------------C-----HHHHHHHHHCCCCEEEEchHH
Confidence 11110 12346666666655479998743221 1 334556677899999987765
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.31 Score=41.88 Aligned_cols=193 Identities=13% Similarity=0.089 Sum_probs=106.2
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH 95 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~ 95 (290)
++|+|..+....+. .+.++++. +.|+++|-+. .| .....+-.+.++++|+++|++++..
T Consensus 2 ~ly~It~~~~~~~~---~~~~~~a~----~~Gv~~v~lr--~k----------~~~~~~~~~~i~~l~~~~~~~livn-- 60 (210)
T 3ceu_A 2 KLIVVTTPTFFVEE---DKIITALF----EEGLDILHLR--KP----------ETPAMYSERLLTLIPEKYHRRIVTH-- 60 (210)
T ss_dssp EEEEECCSSCCTTH---HHHHHHHH----HTTCCEEEEC--CS----------SCCHHHHHHHHHHSCGGGGGGEEES--
T ss_pred eEEEEeCcccccCH---HHHHHHHH----HCCCCEEEEc--cC----------CCCHHHHHHHHHHHHHHhCCeEEEe--
Confidence 36777766543232 34455444 4699887543 11 1111344556788888899998873
Q ss_pred CcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE---EeecCCCC
Q 022892 96 ETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV---CERGTMFG 171 (290)
Q Consensus 96 d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L---~~~gs~~~ 171 (290)
+.++...+ .++.+.+|..++.... ..++.+..+.. |++|+..|. .|-+.+.+ ....+..+
T Consensus 61 --d~~~~A~~~gadgvhl~~~~~~~~~------~~~~~ig~s~~---t~~e~~~A~-----~GaDyv~~g~vf~t~sk~~ 124 (210)
T 3ceu_A 61 --EHFYLKEEFNLMGIHLNARNPSEPH------DYAGHVSCSCH---SVEEVKNRK-----HFYDYVFMSPIYDSISKVN 124 (210)
T ss_dssp --SCTTHHHHTTCSEEECCSSSCSCCT------TCCSEEEEEEC---SHHHHHTTG-----GGSSEEEECCCC-------
T ss_pred --CCHHHHHHcCCCEEEECcccccccc------ccCCEEEEecC---CHHHHHHHh-----hCCCEEEECCcCCCCCCCC
Confidence 45566655 5999999988774221 12566666654 888877662 35544443 11112112
Q ss_pred CCCCCCCchhHHHHHh---cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCC
Q 022892 172 YNDLIVDPRNLEWMRE---ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA 248 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~---~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka 248 (290)
+. ...++..+..+++ .++||+.= ||.. +.-...+++.||+|+-+=+-+.-.
T Consensus 125 ~~-~~~g~~~l~~~~~~~~~~iPviai--------------------GGI~---~~nv~~~~~~Ga~gVav~s~i~~~-- 178 (210)
T 3ceu_A 125 YY-STYTAEELREAQKAKIIDSKVMAL--------------------GGIN---EDNLLEIKDFGFGGAVVLGDLWNK-- 178 (210)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTEEEE--------------------SSCC---TTTHHHHHHTTCSEEEESHHHHTT--
T ss_pred CC-CCCCHHHHHHHHHhcCCCCCEEEE--------------------CCCC---HHHHHHHHHhCCCEEEEhHHhHcC--
Confidence 21 2356777777766 37898651 1211 111335567899999887666421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHh
Q 022892 249 PVDGPTQWPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 249 ~~D~~~sl~p~~l~~lv~~ir~~~~~l 275 (290)
.|.... .+|.+.++..+++.+..
T Consensus 179 -~d~~~~---~~~~~~v~~~~~~~~~~ 201 (210)
T 3ceu_A 179 -FDACLD---QNYLAVIEHFKKLKKLA 201 (210)
T ss_dssp -CCTTTS---SCCHHHHHHHHHHHHHH
T ss_pred -CCHHHH---HHHHHHHHHHHHHHHhh
Confidence 122111 45666666666665543
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.72 Score=45.76 Aligned_cols=157 Identities=13% Similarity=0.146 Sum_probs=94.2
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
....+-++|+|..+-.+.+....++..+++.+ .|+++|-.- +| .. + .. .+.+..+.++++|+++|++
T Consensus 5 ~~~~~~~lYlITd~~~~~~~~~l~~~ve~al~----~Gv~~vQlR--~K-~~-~---~~--~~~~~a~~l~~l~~~~~v~ 71 (540)
T 3nl6_A 5 KEQFDYSLYLVTDSGMIPEGKTLYGQVEAGLQ----NGVTLVQIR--EK-DA-D---TK--FFIEEALQIKELCHAHNVP 71 (540)
T ss_dssp GGGCCCSEEEEC-CTTCCTTCCHHHHHHHHHH----TTCSEEEEC--CS-SS-C---TT--HHHHHHHHHHHHHHHTTCC
T ss_pred CcCCCCCEEEEECchhccCcchHHHHHHHHHH----CCCCEEEEe--cC-CC-C---HH--HHHHHHHHHHHHHHhcCCE
Confidence 34456789999876432122234555555554 688776432 22 11 1 11 1235567789999999999
Q ss_pred EEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC---CCcEEEEe
Q 022892 90 IVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG---NPNVMVCE 165 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G---n~~i~L~~ 165 (290)
++.. | .++...+ .+|-+-+|..++.- ...|+.-..++-|.+|.. |++|+..|.+ .| -+.|.+
T Consensus 72 liIN--D--~~dlA~~~gAdGVHLgq~dl~~-~~ar~~lg~~~iiG~S~h---t~eea~~A~~----~G~~~aDYv~~-- 137 (540)
T 3nl6_A 72 LIIN--D--RIDVAMAIGADGIHVGQDDMPI-PMIRKLVGPDMVIGWSVG---FPEEVDELSK----MGPDMVDYIGV-- 137 (540)
T ss_dssp EEEC--S--CSHHHHHTTCSEEEECTTSSCH-HHHHHHHCTTSEEEEEEC---SHHHHHHHHH----TCC--CCEEEE--
T ss_pred EEEe--C--cHHHHHHcCCCEEEEChhhcCH-HHHHHHhCCCCEEEEECC---CHHHHHHHHH----cCCCCCCEEEE--
Confidence 9974 2 4555555 58889999998864 334555556888999986 8999888754 46 556555
Q ss_pred ecCCCCCCC------CCCCchhHHHHHh-c------CCCEEE
Q 022892 166 RGTMFGYND------LIVDPRNLEWMRE-A------NCPVVA 194 (290)
Q Consensus 166 ~gs~~~y~~------~~~dL~~i~~lk~-~------~~pV~~ 194 (290)
|.-|+.+. ..+.+..+..+++ . ++||+.
T Consensus 138 -Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvA 178 (540)
T 3nl6_A 138 -GTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVG 178 (540)
T ss_dssp -SCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEE
T ss_pred -cCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEE
Confidence 22222111 1134556665554 2 688866
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=94.85 E-value=0.51 Score=43.56 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCCcE-EEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 022892 76 LKILEKVKIAYDIPI-VTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 153 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~-~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i 153 (290)
-..|++..++-+.++ +-++||.-++..+++ .++.+.+++..+.+ +..|.| .++.- |++|+..-++.|
T Consensus 6 ~~~Lr~ll~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~-------~~~G~p---D~~~v-t~~em~~~~~~I 74 (302)
T 3fa4_A 6 ATSLRRALENPDSFIVAPGVYDGLSARVALSAGFDALYMTGAGTAA-------SVHGQA---DLGIC-TLNDMRANAEMI 74 (302)
T ss_dssp HHHHHHHHHSTTCCEEEEEECSHHHHHHHHTTTCSCEEECHHHHHH-------HHHSCC---SSSCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEecCcCHHHHHHHHHcCCCEEEeCcHHHHH-------HHcCCC---CCCcC-CHHHHHHHHHHH
Confidence 346777777777654 779999999999988 69999986543222 335777 56666 899998877766
Q ss_pred HHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 022892 154 RLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 233 (290)
Q Consensus 154 ~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G 233 (290)
.+ ++ .++||++|-+.+- |..+.+....+.....|
T Consensus 75 ~~-----------~~-------------------~~~PviaD~d~Gy----------------g~~~~v~~tv~~l~~aG 108 (302)
T 3fa4_A 75 SN-----------IS-------------------PSTPVIADADTGY----------------GGPIMVARTTEQYSRSG 108 (302)
T ss_dssp HT-----------TS-------------------TTSCEEEECTTTT----------------SSHHHHHHHHHHHHHTT
T ss_pred Hh-----------hc-------------------cCCCEEEECCCCC----------------CCHHHHHHHHHHHHHcC
Confidence 42 10 1479999988763 32333334445556789
Q ss_pred CCEEEEeeeCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 234 VDGVFMEVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 234 A~G~~IEkH~t~dka~-~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
|.|+-||-...|.|.- .+++.-.+.+++-+=++..+......+.
T Consensus 109 aagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~ 153 (302)
T 3fa4_A 109 VAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGS 153 (302)
T ss_dssp CCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCC
Confidence 9999999876554431 1344445555554444444444333343
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.24 Score=47.48 Aligned_cols=109 Identities=19% Similarity=0.200 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-eecCcccHHHHhh-hccee
Q 022892 33 MRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-DVHETVQCEEVGK-VADII 110 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-~~~d~~~~~~l~~-~~d~~ 110 (290)
.+.++.+++ +|+++|...+-. +.. ...++.++++++++|++++. .+.+.+.+..+.+ .+|++
T Consensus 146 ~e~~~~lve----aGvdvIvldta~-----------G~~-~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aGAD~I 209 (400)
T 3ffs_A 146 IERAKLLVE----AGVDVIVLDSAH-----------GHS-LNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGI 209 (400)
T ss_dssp CHHHHHHHH----HTCSEEEECCSC-----------CSB-HHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHH----cCCCEEEEeCCC-----------CCc-ccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHcCCCEE
Confidence 677777777 499998754211 111 34466777787778999985 9999999999888 79999
Q ss_pred cccCC-------------ccCCHHHHHHHHh----cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 022892 111 QIPAF-------------LCRQTDLLVAAAK----TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVM 162 (290)
Q Consensus 111 kIgs~-------------~~~n~~lL~~~a~----~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~ 162 (290)
++|.. ...+..++.+++. .+.|||-.=|.. +.+++..|+. .|..-++
T Consensus 210 ~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~-~~~di~kala----lGAd~V~ 273 (400)
T 3ffs_A 210 KVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIR-YSGDIGKALA----VGASSVM 273 (400)
T ss_dssp EECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCC-SHHHHHHHHT----TTCSEEE
T ss_pred EEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCC-CHHHHHHHHH----cCCCEEE
Confidence 99521 1235566666643 589999999998 9999988754 4654333
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.61 Score=40.59 Aligned_cols=147 Identities=16% Similarity=0.076 Sum_probs=95.5
Q ss_pred HHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc
Q 022892 7 LFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY 86 (290)
Q Consensus 7 ~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~ 86 (290)
++..+. ..++..|.-. .+.+..++.++++.+ .|++++-.. ++ . ..+++.+++.++++
T Consensus 9 ~~~~l~-~~~~i~v~r~---~~~~~~~~~~~al~~----gGv~~iel~-~k-----------~---~~~~~~i~~l~~~~ 65 (214)
T 1wbh_A 9 AESILT-TGPVVPVIVV---KKLEHAVPMAKALVA----GGVRVLNVT-LR-----------T---ECAVDAIRAIAKEV 65 (214)
T ss_dssp HHHHHH-SCSEEEEECC---SSGGGHHHHHHHHHH----TTCCEEEEE-SC-----------S---TTHHHHHHHHHHHC
T ss_pred HHHHHH-HCCEEEEEEC---CCHHHHHHHHHHHHH----cCCCEEEEe-CC-----------C---hhHHHHHHHHHHHC
Confidence 445553 3444443322 244567888888877 589876543 11 1 23455667677777
Q ss_pred C-CcEE-EeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 87 D-IPIV-TDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 87 G-i~~~-s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
+ +.+- -++.+.++++...+ .+|++-.|. ++.+..+.+...+.|++. |.. |++|+..|. ..|-+.+.+
T Consensus 66 ~~~~vgagtvi~~d~~~~A~~aGAd~v~~p~---~d~~v~~~~~~~g~~~i~--G~~-t~~e~~~A~----~~Gad~v~~ 135 (214)
T 1wbh_A 66 PEAIVGAGTVLNPQQLAEVTEAGAQFAISPG---LTEPLLKAATEGTIPLIP--GIS-TVSELMLGM----DYGLKEFKF 135 (214)
T ss_dssp TTSEEEEESCCSHHHHHHHHHHTCSCEEESS---CCHHHHHHHHHSSSCEEE--EES-SHHHHHHHH----HTTCCEEEE
T ss_pred cCCEEeeCEEEEHHHHHHHHHcCCCEEEcCC---CCHHHHHHHHHhCCCEEE--ecC-CHHHHHHHH----HCCCCEEEE
Confidence 4 3222 25888889988877 699998774 567888888889999988 555 999998875 467766666
Q ss_pred EeecCCCCCCCCCC-CchhHHHHHh-c-CCCEEE
Q 022892 164 CERGTMFGYNDLIV-DPRNLEWMRE-A-NCPVVA 194 (290)
Q Consensus 164 ~~~gs~~~y~~~~~-dL~~i~~lk~-~-~~pV~~ 194 (290)
|| ...+ -+..+..++. + ++|++.
T Consensus 136 ------Fp--a~~~gG~~~lk~i~~~~~~ipvva 161 (214)
T 1wbh_A 136 ------FP--AEANGGVKALQAIAGPFSQVRFCP 161 (214)
T ss_dssp ------TT--TTTTTHHHHHHHHHTTCTTCEEEE
T ss_pred ------ec--CccccCHHHHHHHhhhCCCCeEEE
Confidence 33 2222 2556677777 6 788854
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.24 Score=48.40 Aligned_cols=118 Identities=13% Similarity=0.132 Sum_probs=85.3
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s 92 (290)
++++.+.|+.+. + ...++.|++|++ +|+++|...+-. +.. ...++.++++++++ +++++.
T Consensus 215 ~grl~v~aavG~--~-~~~~~~a~~l~~----aG~d~I~id~a~-----------g~~-~~~~~~v~~i~~~~p~~~Vi~ 275 (490)
T 4avf_A 215 QGRLRVGAAVGT--G-ADTGERVAALVA----AGVDVVVVDTAH-----------GHS-KGVIERVRWVKQTFPDVQVIG 275 (490)
T ss_dssp TSCBCCEEEECS--S-TTHHHHHHHHHH----TTCSEEEEECSC-----------CSB-HHHHHHHHHHHHHCTTSEEEE
T ss_pred cCcceeeeeecc--c-cchHHHHHHHhh----cccceEEecccC-----------Ccc-hhHHHHHHHHHHHCCCceEEE
Confidence 467788888776 2 245788888887 499988765211 111 35567788888888 888766
Q ss_pred -eecCcccHHHHhh-hcceecccCCc-------------cCCHHHHHHHHh----cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 93 -DVHETVQCEEVGK-VADIIQIPAFL-------------CRQTDLLVAAAK----TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 93 -~~~d~~~~~~l~~-~~d~~kIgs~~-------------~~n~~lL~~~a~----~~~PVilstG~~~tl~e~~~Ave 151 (290)
.+.+.+.+..+.+ .+|+++||.+. ..+..++.++++ .+.|||-.-|.. +.+++..|+.
T Consensus 276 g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~-~~~di~kal~ 352 (490)
T 4avf_A 276 GNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIR-FSGDLAKAMV 352 (490)
T ss_dssp EEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCC-SHHHHHHHHH
T ss_pred eeeCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCC-CHHHHHHHHH
Confidence 5899999998888 79999985211 234555555543 489999999999 9999998864
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=94.72 E-value=2.3 Score=41.20 Aligned_cols=120 Identities=10% Similarity=-0.039 Sum_probs=75.9
Q ss_pred cCCe-EEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCC-------------CCCCchhHHHHHh-c--CC
Q 022892 129 TGKI-INIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYND-------------LIVDPRNLEWMRE-A--NC 190 (290)
Q Consensus 129 ~~~P-VilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~-------------~~~dL~~i~~lk~-~--~~ 190 (290)
..+| |++|-....+.+++.+.++.+.+.|-+-|++.-++... .... ....+..+..+++ . ++
T Consensus 295 ~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~i 374 (443)
T 1tv5_A 295 KKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQI 374 (443)
T ss_dssp SSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCC
Confidence 3679 99999887788899999999988886555554433210 0000 0012456777777 5 79
Q ss_pred CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 191 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 191 pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
||+....=. . ..-+..++++||++++|=+-+-- -.|.-++++.+.+++
T Consensus 375 PVIg~GGI~-----------------s-----~~DA~e~l~aGAd~Vqigrall~----------~gP~l~~~i~~~l~~ 422 (443)
T 1tv5_A 375 PIIASGGIF-----------------S-----GLDALEKIEAGASVCQLYSCLVF----------NGMKSAVQIKRELNH 422 (443)
T ss_dssp CEEEESSCC-----------------S-----HHHHHHHHHTTEEEEEESHHHHH----------HGGGHHHHHHHHHHH
T ss_pred cEEEECCCC-----------------C-----HHHHHHHHHcCCCEEEEcHHHHh----------cChHHHHHHHHHHHH
Confidence 998743221 1 34566778899998887665310 145677778777776
Q ss_pred HHHHhCCccc
Q 022892 271 IAKVSKGKQR 280 (290)
Q Consensus 271 ~~~~lg~~~~ 280 (290)
.-...|-+++
T Consensus 423 ~l~~~G~~si 432 (443)
T 1tv5_A 423 LLYQRGYYNL 432 (443)
T ss_dssp HHHHHTCSSS
T ss_pred HHHHhCCCCH
Confidence 6556665444
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.29 Score=45.93 Aligned_cols=229 Identities=10% Similarity=-0.024 Sum_probs=125.6
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC---Cc------c------cCCCCChhH
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT---SS------K------SFRGPGMVE 74 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt---s~------~------~~~g~~~~~ 74 (290)
.+...+|+.+=||+-. + ..++.+.+-+ +|+.+|.-.+....||. .| . .|...|++.
T Consensus 44 Gl~~~NPv~lAaG~~~--~---~~e~~~~~~~----~G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~n~G~~~ 114 (345)
T 3oix_A 44 SFDFDNCLMNAAGVYC--M---TREELAAIDH----SEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLPNLGINY 114 (345)
T ss_dssp TEEESCSEEECTTSSC--S---SHHHHHHHHT----SSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCCBSCHHH
T ss_pred CEECCCCCEEcCCCCC--C---CHHHHHHHHH----cCCCeEEeeeecCCCCCCCCCCcEEecccchhccCCCCChhHHH
Confidence 5666788766667653 1 1244444443 57655444444423321 11 1 233344455
Q ss_pred HHHHHHHHH-HhcCCcEEEeecCcccHHHH--hhh------cceecc--c------CC-ccCCHHHH----HHHH-hcCC
Q 022892 75 GLKILEKVK-IAYDIPIVTDVHETVQCEEV--GKV------ADIIQI--P------AF-LCRQTDLL----VAAA-KTGK 131 (290)
Q Consensus 75 ~l~~L~~~~-~~~Gi~~~s~~~d~~~~~~l--~~~------~d~~kI--g------s~-~~~n~~lL----~~~a-~~~~ 131 (290)
.++.+++.. +..+.|++..++-...-+|+ .+. .|++-| + .+ ..++.+++ +++- ..++
T Consensus 115 ~~~~l~~~~~~~~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~ 194 (345)
T 3oix_A 115 YLDYVTELQKQPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTK 194 (345)
T ss_dssp HHHHHHHHHHSTTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHhhccCCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCC
Confidence 666676654 35789999998754322222 111 123322 2 12 22555544 4442 3578
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec------------C-------CC-CC---CCCCCCchhHHHHHh-
Q 022892 132 IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG------------T-------MF-GY---NDLIVDPRNLEWMRE- 187 (290)
Q Consensus 132 PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g------------s-------~~-~y---~~~~~dL~~i~~lk~- 187 (290)
||.+|-....++.++..+++.. |...+.++.+. . .+ +| +...+.++.+..+++
T Consensus 195 PV~vKi~p~~~~~~~a~~~~~a---ga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~ 271 (345)
T 3oix_A 195 PLGIKLPPYFDIVHFDQAAAIF---NXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKR 271 (345)
T ss_dssp CEEEEECCCCCHHHHHHHHHHH---TTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCHHHHHHHHHHh---CCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHH
Confidence 9999999887888888877755 33334333222 1 00 01 111223567778877
Q ss_pred c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHH
Q 022892 188 A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELL 265 (290)
Q Consensus 188 ~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv 265 (290)
. ++||+.+..=. . ..-+...+.+||++++|=+-+-. -.|.-++++.
T Consensus 272 ~~~~ipIIg~GGI~--------------------s--~~da~~~l~aGAd~V~igra~~~----------~gP~~~~~i~ 319 (345)
T 3oix_A 272 LNPSIQIIGTGGVX--------------------T--GRDAFEHILCGASMVQIGTALHQ----------EGPQIFKRIT 319 (345)
T ss_dssp SCTTSEEEEESSCC--------------------S--HHHHHHHHHHTCSEEEESHHHHH----------HCTHHHHHHH
T ss_pred cCCCCcEEEECCCC--------------------C--hHHHHHHHHhCCCEEEEChHHHh----------cChHHHHHHH
Confidence 5 68998742211 1 33455667889999988766311 1466788888
Q ss_pred HHHHHHHHHhCCccccc
Q 022892 266 EELVAIAKVSKGKQRMN 282 (290)
Q Consensus 266 ~~ir~~~~~lg~~~~~~ 282 (290)
+.+++.-...|-+++-+
T Consensus 320 ~~L~~~l~~~G~~si~e 336 (345)
T 3oix_A 320 KELXAIMTEKGYETLED 336 (345)
T ss_dssp HHHHHHHHHHTCCSGGG
T ss_pred HHHHHHHHHcCCCCHHH
Confidence 88877766666655433
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=2 Score=39.68 Aligned_cols=101 Identities=12% Similarity=0.018 Sum_probs=66.2
Q ss_pred HHHHHHHh-cCCeEEEeCCC------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCC-CCCCchhHHHHHh-cCC
Q 022892 121 DLLVAAAK-TGKIINIKKGQ------FCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYND-LIVDPRNLEWMRE-ANC 190 (290)
Q Consensus 121 ~lL~~~a~-~~~PVilstG~------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~-~~~dL~~i~~lk~-~~~ 190 (290)
++++++-+ .+.||.++-.. ..+.++....++.+...|-.-|++..++... .++. ...++..+..+|+ +++
T Consensus 199 eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~i 278 (338)
T 1z41_A 199 EIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADM 278 (338)
T ss_dssp HHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCC
Confidence 34444432 38999999544 2378899999999988887767765543211 1111 2246677788888 899
Q ss_pred CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CCEEEEeeeC
Q 022892 191 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVHD 243 (290)
Q Consensus 191 pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G-A~G~~IEkH~ 243 (290)
||+....-. . +..+..+++.| ||++++=+-+
T Consensus 279 PVi~~Ggi~-----------------s-----~~~a~~~l~~G~aD~V~iGR~~ 310 (338)
T 1z41_A 279 ATGAVGMIT-----------------D-----GSMAEEILQNGRADLIFIGREL 310 (338)
T ss_dssp EEEECSSCC-----------------S-----HHHHHHHHHTTSCSEEEECHHH
T ss_pred CEEEECCCC-----------------C-----HHHHHHHHHcCCceEEeecHHH
Confidence 998732211 1 45677788888 9998887765
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.97 Score=39.30 Aligned_cols=213 Identities=11% Similarity=0.006 Sum_probs=115.5
Q ss_pred EEEEccCCcc-CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCC-ccc--------CCCCChhHHHHHHHHHHHhcC
Q 022892 18 FLLAGPNVIE-SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTS-SKS--------FRGPGMVEGLKILEKVKIAYD 87 (290)
Q Consensus 18 ~iIAgpcsie-n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts-~~~--------~~g~~~~~~l~~L~~~~~~~G 87 (290)
.+|+-..+.+ +.+...+.|+++.+ . +|.+-.+....+|--. +.. -.|..+..+++.++++++..+
T Consensus 6 ~~~~~i~~~~~~~~~~~~~a~~~~~----~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~ 80 (248)
T 1geq_A 6 SLIPYLTAGDPDKQSTLNFLLALDE----Y-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSS 80 (248)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHGG----G-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH----c-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCC
Confidence 4455443322 33567777777755 4 7776655211112110 000 012233456788888888888
Q ss_pred CcEEEeec-Cc-------ccHHHHhh-hcceecccCCccCCHH-HHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 88 IPIVTDVH-ET-------VQCEEVGK-VADIIQIPAFLCRQTD-LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 88 i~~~s~~~-d~-------~~~~~l~~-~~d~~kIgs~~~~n~~-lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
+|+..-.. ++ +.++.+.+ .+|.+-++.....+.. +++.+.+.+..+++--... |..|...++. ...
T Consensus 81 ~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~-t~~e~~~~~~---~~~ 156 (248)
T 1geq_A 81 TPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPN-TPDERLKVID---DMT 156 (248)
T ss_dssp CCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTT-CCHHHHHHHH---HHC
T ss_pred CCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCC-CHHHHHHHHH---hcC
Confidence 88776553 54 55666555 6999999977666654 4455566788777755555 6666555443 222
Q ss_pred CCcEEEEeecCCCCCCC-----CCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH
Q 022892 158 NPNVMVCERGTMFGYND-----LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA 231 (290)
Q Consensus 158 n~~i~L~~~gs~~~y~~-----~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva 231 (290)
..-+.++-. +++.. ...++..+..+++ .++||..+.-=+ . ..-+.....
T Consensus 157 d~~i~~~~~---~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~----------------~------~e~i~~~~~ 211 (248)
T 1geq_A 157 TGFVYLVSL---YGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVS----------------K------REHVVSLLK 211 (248)
T ss_dssp SSEEEEECC---C-------CCCHHHHHHHHHHHHHCSSCEEEESCCC----------------S------HHHHHHHHH
T ss_pred CCeEEEEEC---CccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecC----------------C------HHHHHHHHH
Confidence 112323222 11111 0123556777777 789998742111 1 233444567
Q ss_pred cCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 232 VGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 232 ~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
+||+|+++=+-+.-. ..+ +++..+++++.+++.
T Consensus 212 ~Gad~vivGsai~~~--~~~-----~~~~~~~~~~~~~~~ 244 (248)
T 1geq_A 212 EGANGVVVGSALVKI--IGE-----KGREATEFLKKKVEE 244 (248)
T ss_dssp TTCSEEEECHHHHHH--HHH-----HGGGCHHHHHHHHHH
T ss_pred cCCCEEEEcHHHHhh--Hhh-----ChHHHHHHHHHHHHH
Confidence 899999988765311 000 115677777776554
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.53 Score=43.13 Aligned_cols=137 Identities=11% Similarity=0.022 Sum_probs=88.1
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
-..|++..++-+..++-++||.-++..+++ .++.+.+++..+.+. .+|.| .++.- |++|+...++.|.
T Consensus 10 ~~~lr~l~~~~~~i~~~~a~D~~sA~i~e~aGf~ai~vs~s~~a~~-------~lG~p---D~~~v-t~~em~~~~~~I~ 78 (287)
T 3b8i_A 10 RAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQ-------VLAAP---DFALI-TLSEFVEQATRIG 78 (287)
T ss_dssp HHHHHHHHHSSCCEECEECCSHHHHHHHHHTTCSCEEECHHHHHHH-------HHSCC---SSSCS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCcHHHHHH-------hcCCC---CCCCC-CHHHHHHHHHHHH
Confidence 345777777777888889999999999988 699999998755543 23555 34555 9999998887765
Q ss_pred HcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCC
Q 022892 155 LAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGV 234 (290)
Q Consensus 155 ~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA 234 (290)
+. ..+||++|-+.+- |..+.+...++..+..||
T Consensus 79 r~-------------------------------~~~PviaD~d~Gy----------------g~~~~~~~~v~~l~~aGa 111 (287)
T 3b8i_A 79 RV-------------------------------ARLPVIADADHGY----------------GNALNVMRTVVELERAGI 111 (287)
T ss_dssp TT-------------------------------CSSCEEEECTTCS----------------SSHHHHHHHHHHHHHHTC
T ss_pred hc-------------------------------CCCCEEEECCCCC----------------CCHHHHHHHHHHHHHhCC
Confidence 32 1368888877653 223333334444556899
Q ss_pred CEEEEeeeCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 235 DGVFMEVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 235 ~G~~IEkH~t~dka~-~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
.|+-||--..|.|.- .+++ -.+.+++ ++.|+.+..+
T Consensus 112 ~gv~iED~~~pKrcgh~~gk-l~~~~e~---~~~I~aa~~a 148 (287)
T 3b8i_A 112 AALTIEDTLLPAQFGRKSTD-LICVEEG---VGKIRAALEA 148 (287)
T ss_dssp SEEEEECBCCSCCTTTCTTC-BCCHHHH---HHHHHHHHHH
T ss_pred eEEEEcCCCCccccCCCCCC-ccCHHHH---HHHHHHHHHc
Confidence 999999765554432 1333 4444444 4444444443
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.57 Score=44.28 Aligned_cols=143 Identities=15% Similarity=0.036 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHhcCCcEEEe----ecCcccHHHHhh-hcceecccCCccCC---HHHHHHHHhc--CCeEEEeCCCCCC
Q 022892 73 VEGLKILEKVKIAYDIPIVTD----VHETVQCEEVGK-VADIIQIPAFLCRQ---TDLLVAAAKT--GKIINIKKGQFCA 142 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~----~~d~~~~~~l~~-~~d~~kIgs~~~~n---~~lL~~~a~~--~~PVilstG~~~t 142 (290)
++..++++++.+...+.+... +...+.++.+.+ .+|++.|-+..-.. .+.++++.+. +.||+..+. .|
T Consensus 82 e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v--~t 159 (366)
T 4fo4_A 82 EQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNV--AT 159 (366)
T ss_dssp HHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEE--CS
T ss_pred HHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeee--CC
Confidence 455555666554322333322 233455666655 69998873322222 3445666554 789988554 36
Q ss_pred HHHHHHHHHHHHHcCCCcEEE-----EeecCCC--CCCCCCCCchhHHHHHh----cCCCEEEeCCCCCCCCCCCccCCC
Q 022892 143 SSVMVNSAEKVRLAGNPNVMV-----CERGTMF--GYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGG 211 (290)
Q Consensus 143 l~e~~~Ave~i~~~Gn~~i~L-----~~~gs~~--~y~~~~~dL~~i~~lk~----~~~pV~~D~sHs~~~~~~~~~~~~ 211 (290)
.++.+.+.+ .|-+-|.+ -+|++.. +.. .-++..+..+.+ .++||+.|.-=.
T Consensus 160 ~e~A~~a~~----aGAD~I~vG~gpGs~~~tr~~~g~g--~p~~~~l~~v~~~~~~~~iPVIA~GGI~------------ 221 (366)
T 4fo4_A 160 AEGARALIE----AGVSAVKVGIGPGSICTTRIVTGVG--VPQITAIADAAGVANEYGIPVIADGGIR------------ 221 (366)
T ss_dssp HHHHHHHHH----HTCSEEEECSSCSTTBCHHHHHCCC--CCHHHHHHHHHHHHGGGTCCEEEESCCC------------
T ss_pred HHHHHHHHH----cCCCEEEEecCCCCCCCcccccCcc--cchHHHHHHHHHHHhhcCCeEEEeCCCC------------
Confidence 888777654 57654444 0232210 011 123445555542 589998752211
Q ss_pred CccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCC
Q 022892 212 GVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 212 ~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~ 245 (290)
. ..-...|.++||+|+++=+-|.-
T Consensus 222 --------~--~~di~kala~GAd~V~vGs~f~~ 245 (366)
T 4fo4_A 222 --------F--SGDISKAIAAGASCVMVGSMFAG 245 (366)
T ss_dssp --------S--HHHHHHHHHTTCSEEEESTTTTT
T ss_pred --------C--HHHHHHHHHcCCCEEEEChHhhc
Confidence 1 22244678999999999876653
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.94 Score=42.62 Aligned_cols=179 Identities=16% Similarity=0.027 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhc----ceecc---------------------------------cCC-
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVA----DIIQI---------------------------------PAF- 115 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~----d~~kI---------------------------------gs~- 115 (290)
+|=..+.+.|.+.|++++.+-+...+++.+.+.. -|+|+ |-|
T Consensus 86 ~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~ 165 (352)
T 3sgz_A 86 DGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRR 165 (352)
T ss_dssp THHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCH
T ss_pred cHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcch
Confidence 5556788999999999999988888888877632 26653 110
Q ss_pred -cc-----------------------------------CCHHHHHHHH-hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 022892 116 -LC-----------------------------------RQTDLLVAAA-KTGKIINIKKGQFCASSVMVNSAEKVRLAGN 158 (290)
Q Consensus 116 -~~-----------------------------------~n~~lL~~~a-~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn 158 (290)
++ -+.+.++.+- .+++||++|-- . +.++.+.++ ..|-
T Consensus 166 ~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~lr~~~~~PvivK~v-~-~~e~A~~a~----~~Ga 239 (352)
T 3sgz_A 166 RDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGI-L-TKEDAELAM----KHNV 239 (352)
T ss_dssp HHHHHHHHSCHHHHTTCC---------------CCCTTCCHHHHHHHHHHCCSCEEEEEE-C-SHHHHHHHH----HTTC
T ss_pred hhhhcCCCCCcccchhhhcccccccccchhhhhccCCCCCHHHHHHHHHhcCCCEEEEec-C-cHHHHHHHH----HcCC
Confidence 00 0113455553 46889999854 2 677765544 4676
Q ss_pred CcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 159 PNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 159 ~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
+-|++-..|... .......+..++.+++ . .+||+.|..=. .| .. +..|+++||+
T Consensus 240 D~I~vsn~GG~~-~d~~~~~~~~L~~i~~av~~~ipVia~GGI~----------------~g-----~D-v~kaLalGA~ 296 (352)
T 3sgz_A 240 QGIVVSNHGGRQ-LDEVSASIDALREVVAAVKGKIEVYMDGGVR----------------TG-----TD-VLKALALGAR 296 (352)
T ss_dssp SEEEECCGGGTS-SCSSCCHHHHHHHHHHHHTTSSEEEEESSCC----------------SH-----HH-HHHHHHTTCS
T ss_pred CEEEEeCCCCCc-cCCCccHHHHHHHHHHHhCCCCeEEEECCCC----------------CH-----HH-HHHHHHcCCC
Confidence 655554444421 1112235567777765 4 68998864322 12 33 4457889999
Q ss_pred EEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCcccccc
Q 022892 236 GVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNI 283 (290)
Q Consensus 236 G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~~~~~~ 283 (290)
+++|=+-+-..-+ ..+. .--.+-++.+.++++..-..+|.+++-++
T Consensus 297 aV~iGr~~l~~l~-~~G~-~gv~~~l~~l~~el~~~m~~~G~~~i~el 342 (352)
T 3sgz_A 297 CIFLGRPILWGLA-CKGE-DGVKEVLDILTAELHRCMTLSGCQSVAEI 342 (352)
T ss_dssp EEEESHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHTCSBGGGC
T ss_pred EEEECHHHHHHHH-hcCc-HHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999875411000 0000 00002466677777777777787655443
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.4 Score=45.30 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=84.7
Q ss_pred HhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-
Q 022892 8 FNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY- 86 (290)
Q Consensus 8 ~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~- 86 (290)
++.+....++.+-++.+. +. ...+.++.+++ +|+++|...+.. +.. ...++.++++++++
T Consensus 88 i~~vk~~~~l~vga~vg~--~~-~~~~~~~~lie----aGvd~I~idta~-----------G~~-~~~~~~I~~ik~~~p 148 (366)
T 4fo4_A 88 VHQVKISGGLRVGAAVGA--AP-GNEERVKALVE----AGVDVLLIDSSH-----------GHS-EGVLQRIRETRAAYP 148 (366)
T ss_dssp HHHHHTTTSCCCEEECCS--CT-TCHHHHHHHHH----TTCSEEEEECSC-----------TTS-HHHHHHHHHHHHHCT
T ss_pred HHHHHhcCceeEEEEecc--Ch-hHHHHHHHHHh----CCCCEEEEeCCC-----------CCC-HHHHHHHHHHHHhcC
Confidence 344444455556555543 21 24556666666 599887654211 111 35566778887777
Q ss_pred CCcEEE-eecCcccHHHHhh-hcceeccc---CCc----------cCCHHHHHHHH----hcCCeEEEeCCCCCCHHHHH
Q 022892 87 DIPIVT-DVHETVQCEEVGK-VADIIQIP---AFL----------CRQTDLLVAAA----KTGKIINIKKGQFCASSVMV 147 (290)
Q Consensus 87 Gi~~~s-~~~d~~~~~~l~~-~~d~~kIg---s~~----------~~n~~lL~~~a----~~~~PVilstG~~~tl~e~~ 147 (290)
+++++. .+.+++.+..+.+ .+|++++| ... ..+..+|.+++ ..+.||+-.=|.. +..++.
T Consensus 149 ~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~-~~~di~ 227 (366)
T 4fo4_A 149 HLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIR-FSGDIS 227 (366)
T ss_dssp TCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCC-SHHHHH
T ss_pred CCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCC-CHHHHH
Confidence 888765 7999999998887 79999994 111 23445555554 4689999999988 999988
Q ss_pred HHHHHHHHcCCCcEE
Q 022892 148 NSAEKVRLAGNPNVM 162 (290)
Q Consensus 148 ~Ave~i~~~Gn~~i~ 162 (290)
.|+. .|..-++
T Consensus 228 kala----~GAd~V~ 238 (366)
T 4fo4_A 228 KAIA----AGASCVM 238 (366)
T ss_dssp HHHH----TTCSEEE
T ss_pred HHHH----cCCCEEE
Confidence 7754 4654333
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.36 Score=45.42 Aligned_cols=102 Identities=19% Similarity=0.181 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-eecCcccHHHHhh-hccee
Q 022892 33 MRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-DVHETVQCEEVGK-VADII 110 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-~~~d~~~~~~l~~-~~d~~ 110 (290)
.+.++.+++ +|+++|-..+- .+.. ...++.++++++.++++++. .+.+++.+..+.+ .+|++
T Consensus 107 ~e~a~~l~e----aGad~I~ld~a-----------~G~~-~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I 170 (361)
T 3khj_A 107 IERAKLLVE----AGVDVIVLDSA-----------HGHS-LNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGI 170 (361)
T ss_dssp HHHHHHHHH----TTCSEEEECCS-----------CCSB-HHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHH----cCcCeEEEeCC-----------CCCc-HHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEE
Confidence 556666655 69998764311 1111 34566788888888999996 9999999998888 69999
Q ss_pred cccCC--c-----------cCCHHHHHHHH----hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 111 QIPAF--L-----------CRQTDLLVAAA----KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 111 kIgs~--~-----------~~n~~lL~~~a----~~~~PVilstG~~~tl~e~~~Ave 151 (290)
++|.. . ..+...+.+++ ..+.||+-.=|.. +.+++..|+.
T Consensus 171 ~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~-~~~di~kala 227 (361)
T 3khj_A 171 KVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIR-YSGDIGKALA 227 (361)
T ss_dssp EECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCC-SHHHHHHHHH
T ss_pred EEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCC-CHHHHHHHHH
Confidence 99521 1 23445555553 3589999999998 9999888754
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=94.44 E-value=1.7 Score=40.42 Aligned_cols=141 Identities=12% Similarity=0.015 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHH----HH-hcCCeEEEeC--CCC--CCHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVA----AA-KTGKIINIKK--GQF--CASS 144 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~----~a-~~~~PVilst--G~~--~tl~ 144 (290)
+.+....+.+.+.|.+.+-=-+....-....+ .-|+..+.+..++.+ +. ..+.||.+|. |.. .+.+
T Consensus 70 ~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d-----~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~ 144 (350)
T 3b0p_A 70 KSLAEAARIGEAFGYDEINLNLGCPSEKAQEG-----GYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYR 144 (350)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCCSHHHHHT-----TCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCCCcCcCC-----CcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHH
Confidence 45566666666667665532222111111111 125666677766543 32 2589999975 332 1456
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCC-CCCC------CCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccC
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGTMF-GYND------LIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~------~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
+....++.+...|-.-|++ |.++.. +|.. ...++..+..+++ + ++||+.+.+-.
T Consensus 145 ~~~~~a~~l~~aG~d~I~V-~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~---------------- 207 (350)
T 3b0p_A 145 GLAQSVEAMAEAGVKVFVV-HARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIR---------------- 207 (350)
T ss_dssp HHHHHHHHHHHTTCCEEEE-ECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCC----------------
T ss_pred HHHHHHHHHHHcCCCEEEE-ecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcC----------------
Confidence 7777788888888765554 554321 1211 1246778888888 7 89998854322
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 216 GGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 216 ~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
. ..-+..+++ ||||++|=+-+
T Consensus 208 -s-----~eda~~~l~-GaD~V~iGRa~ 228 (350)
T 3b0p_A 208 -S-----LEEALFHLK-RVDGVMLGRAV 228 (350)
T ss_dssp -S-----HHHHHHHHT-TSSEEEECHHH
T ss_pred -C-----HHHHHHHHh-CCCEEEECHHH
Confidence 1 344555666 99999998755
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.31 Score=47.61 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=80.9
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE-
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT- 92 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s- 92 (290)
.++.+.+.++. +.+ ..+.|+++++ +|+++|-...-. |.. ...++.++++++.. +++++.
T Consensus 242 ~rl~vga~vG~--~~~-~~~~a~~~~~----aG~d~v~i~~~~-----------G~~-~~~~~~i~~i~~~~~~~pvi~~ 302 (514)
T 1jcn_A 242 KQLLCGAAVGT--RED-DKYRLDLLTQ----AGVDVIVLDSSQ-----------GNS-VYQIAMVHYIKQKYPHLQVIGG 302 (514)
T ss_dssp SCBCCEEEECS--STT-HHHHHHHHHH----TTCSEEEECCSC-----------CCS-HHHHHHHHHHHHHCTTCEEEEE
T ss_pred CceeeeeEecC--chh-hHHHHHHHHH----cCCCEEEeeccC-----------Ccc-hhHHHHHHHHHHhCCCCceEec
Confidence 45566666664 222 4677777666 699998763211 111 23456677777777 899997
Q ss_pred eecCcccHHHHhh-hcceecccC--C--------------ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 93 DVHETVQCEEVGK-VADIIQIPA--F--------------LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 93 ~~~d~~~~~~l~~-~~d~~kIgs--~--------------~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
++.+.+.+..+.+ .+|++.+|. + ...+..++.++.+ .+.||+.+-|.. +..++..|+.
T Consensus 303 ~v~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~-~~~di~kala 378 (514)
T 1jcn_A 303 NVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQ-TVGHVVKALA 378 (514)
T ss_dssp EECSHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCC-SHHHHHHHHH
T ss_pred ccchHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHH
Confidence 8999999998887 699998843 1 1234466666654 589999999999 9999988764
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=94.43 E-value=0.37 Score=44.27 Aligned_cols=105 Identities=11% Similarity=-0.014 Sum_probs=67.6
Q ss_pred HHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecC-------cccHH----HHhh-hcceec
Q 022892 44 TKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE-------TVQCE----EVGK-VADIIQ 111 (290)
Q Consensus 44 ~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d-------~~~~~----~l~~-~~d~~k 111 (290)
.+.|+++|....|.. +.. +. ...+.+..+.+.|+++|++++.+... ++.+. ...+ .+|++|
T Consensus 135 v~~GAdaV~~~i~~G----s~~-~~--~~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VK 207 (295)
T 3glc_A 135 VRLNSCAVAAQVYIG----SEY-EH--QSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIK 207 (295)
T ss_dssp HHTTCSEEEEEECTT----STT-HH--HHHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEE
T ss_pred HHCCCCEEEEEEECC----CCc-HH--HHHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEE
Confidence 346888887765542 000 00 01345667888999999999996542 22222 2223 589999
Q ss_pred ccCCccCCHHHHHHH-HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC
Q 022892 112 IPAFLCRQTDLLVAA-AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 112 Igs~~~~n~~lL~~~-a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~ 159 (290)
.+.-. +.++++ +..+.||+++=|...+.++.++.+......|-.
T Consensus 208 t~~t~----e~~~~vv~~~~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~ 252 (295)
T 3glc_A 208 TYYVE----KGFERIVAGCPVPIVIAGGKKLPEREALEMCWQAIDQGAS 252 (295)
T ss_dssp EECCT----TTHHHHHHTCSSCEEEECCSCCCHHHHHHHHHHHHHTTCS
T ss_pred eCCCH----HHHHHHHHhCCCcEEEEECCCCCHHHHHHHHHHHHHhCCe
Confidence 98431 223444 467899999999876778888888666667764
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.14 Score=46.99 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=66.5
Q ss_pred cCCccCCHHHHH----HHH-hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCchhHHHHH
Q 022892 113 PAFLCRQTDLLV----AAA-KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWMR 186 (290)
Q Consensus 113 gs~~~~n~~lL~----~~a-~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i~~lk 186 (290)
|+..+.+..++. ++. ..+.||.+|.....+.++....++.+...|-.-|++ |.++.. .|.. ..++..+..++
T Consensus 104 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v-~g~~~~~~~~~-~~~~~~i~~i~ 181 (318)
T 1vhn_A 104 GGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFI-HTRTVVQSFTG-RAEWKALSVLE 181 (318)
T ss_dssp GGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEE-ESSCTTTTTSS-CCCGGGGGGSC
T ss_pred ccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEE-cCCCccccCCC-CcCHHHHHHHH
Confidence 455555665543 332 357999999744323333335666777788765555 655432 2321 24555666666
Q ss_pred hcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH-cCCCEEEEeeeCCCCCC
Q 022892 187 EANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA-VGVDGVFMEVHDDPLNA 248 (290)
Q Consensus 187 ~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva-~GA~G~~IEkH~t~dka 248 (290)
+ ++||+.+.+-.. ..-+..+++ .||||++|=+-+--+..
T Consensus 182 ~-~ipVi~~GgI~s----------------------~~da~~~l~~~gad~V~iGR~~l~~P~ 221 (318)
T 1vhn_A 182 K-RIPTFVSGDIFT----------------------PEDAKRALEESGCDGLLVARGAIGRPW 221 (318)
T ss_dssp C-SSCEEEESSCCS----------------------HHHHHHHHHHHCCSEEEESGGGTTCTT
T ss_pred c-CCeEEEECCcCC----------------------HHHHHHHHHcCCCCEEEECHHHHhCcc
Confidence 6 899998644221 344556666 79999999987654443
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.73 Score=42.78 Aligned_cols=176 Identities=14% Similarity=0.068 Sum_probs=106.7
Q ss_pred CHHHHHHHHH-HHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH------h-cCCcEEEeecCccc
Q 022892 28 SEEHIMRMAK-HIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI------A-YDIPIVTDVHETVQ 99 (290)
Q Consensus 28 n~~~~le~Ak-~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~------~-~Gi~~~s~~~d~~~ 99 (290)
+.+..+++|+ +|.+ +|++.|=..++- +++ ..+++++++++ . .+..+.+-.-....
T Consensus 39 ~~~~k~~i~~~~L~~----~Gv~~IE~g~~~----~~~---------~~~~~v~~~~~~~~~~~~~~~~~i~~l~~~~~~ 101 (337)
T 3ble_A 39 STSEKLNIAKFLLQK----LNVDRVEIASAR----VSK---------GELETVQKIMEWAATEQLTERIEILGFVDGNKT 101 (337)
T ss_dssp CHHHHHHHHHHHHHT----TCCSEEEEEETT----SCT---------THHHHHHHHHHHHHHTTCGGGEEEEEESSTTHH
T ss_pred CHHHHHHHHHHHHHH----cCCCEEEEeCCC----CCh---------hHHHHHHHHHhhhhhhccCCCCeEEEEccchhh
Confidence 5677888888 8876 699887654432 122 23444444443 1 23444444444445
Q ss_pred HHHHhh-hcceecccCC--ccC-----------CH----HHHHHHHhcCCeEEEeCCC-----CCCHHHHHHHHHHHHHc
Q 022892 100 CEEVGK-VADIIQIPAF--LCR-----------QT----DLLVAAAKTGKIINIKKGQ-----FCASSVMVNSAEKVRLA 156 (290)
Q Consensus 100 ~~~l~~-~~d~~kIgs~--~~~-----------n~----~lL~~~a~~~~PVilstG~-----~~tl~e~~~Ave~i~~~ 156 (290)
++.+.+ .++++-|-.. +.. +. +.++++-+.|+.|.+.--. -.+++.+.+.++.+...
T Consensus 102 i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (337)
T 3ble_A 102 VDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKE 181 (337)
T ss_dssp HHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHc
Confidence 666555 5776655432 111 11 3344555678888876433 22688888888888899
Q ss_pred CCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCC
Q 022892 157 GNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGV 234 (290)
Q Consensus 157 Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA 234 (290)
|...|.|+.-... ..|.. + ..-+..+++ + ++|+++ +.|-. +.+...-+.+|+.+||
T Consensus 182 Ga~~i~l~DT~G~-~~P~~-v-~~lv~~l~~~~p~~~i~~-H~Hnd------------------~GlA~AN~laAv~aGa 239 (337)
T 3ble_A 182 HIERIFLPDTLGV-LSPEE-T-FQGVDSLIQKYPDIHFEF-HGHND------------------YDLSVANSLQAIRAGV 239 (337)
T ss_dssp CCSEEEEECTTCC-CCHHH-H-HHHHHHHHHHCTTSCEEE-ECBCT------------------TSCHHHHHHHHHHTTC
T ss_pred CCCEEEEecCCCC-cCHHH-H-HHHHHHHHHhcCCCeEEE-EecCC------------------cchHHHHHHHHHHhCC
Confidence 9888888776542 12221 1 144666777 6 789999 77763 2233556778999999
Q ss_pred CEEEEeeeCC
Q 022892 235 DGVFMEVHDD 244 (290)
Q Consensus 235 ~G~~IEkH~t 244 (290)
+ .|+.-+.
T Consensus 240 ~--~vd~tv~ 247 (337)
T 3ble_A 240 K--GLHASIN 247 (337)
T ss_dssp S--EEEEBGG
T ss_pred C--EEEEecc
Confidence 8 7886554
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.3 Score=46.21 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=104.3
Q ss_pred hcCCCCeEEEEccCCc-cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 11 LKAAEPFFLLAGPNVI-ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 11 i~~~~~~~iIAgpcsi-en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
||-+.|.-|-...+.- .|.+...+..++|.+ +|+++|....-. .+.-+.+.+.+++..+|
T Consensus 26 IGG~~Pi~VQSMtnt~T~D~~atv~Qi~~l~~----aG~diVRvavp~---------------~~~a~al~~I~~~~~vP 86 (366)
T 3noy_A 26 IGGDAPIVVQSMTSTKTHDVEATLNQIKRLYE----AGCEIVRVAVPH---------------KEDVEALEEIVKKSPMP 86 (366)
T ss_dssp ESTTSCCEEEEECCSCTTCHHHHHHHHHHHHH----TTCCEEEEECCS---------------HHHHHHHHHHHHHCSSC
T ss_pred EcCCCcEEEEEecCCCCcCHHHHHHHHHHHHH----cCCCEEEeCCCC---------------hHHHHHHHHHHhcCCCC
Confidence 5566666665554431 245666777777766 699999875322 35567788888889999
Q ss_pred EEEee-cCcccHHHHhh-hcceecccCCccCCH----HHHHHHHhcCCeEEEeC-------------CCCCCHHHHHHH-
Q 022892 90 IVTDV-HETVQCEEVGK-VADIIQIPAFLCRQT----DLLVAAAKTGKIINIKK-------------GQFCASSVMVNS- 149 (290)
Q Consensus 90 ~~s~~-~d~~~~~~l~~-~~d~~kIgs~~~~n~----~lL~~~a~~~~PVilst-------------G~~~tl~e~~~A- 149 (290)
++.++ ||+..+....+ .+|.+-|-.+++-.. .+++.+...++||-+=. |.. +++.+.++
T Consensus 87 lvaDiHf~~~lal~a~e~G~dklRINPGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~ll~~yg~~-~~eamVeSA 165 (366)
T 3noy_A 87 VIADIHFAPSYAFLSMEKGVHGIRINPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLLEKYGYP-SAEALAESA 165 (366)
T ss_dssp EEEECCSCHHHHHHHHHTTCSEEEECHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHSSC-CHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHhCCCeEEECCcccCchhHHHHHHHHHHHcCCCEEEecCCcCCCHHHHHhcCCC-CHHHHHHHH
Confidence 99998 99988877777 599999988888543 46677778899987731 112 55554444
Q ss_pred ---HHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCC
Q 022892 150 ---AEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTH 198 (290)
Q Consensus 150 ---ve~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sH 198 (290)
++++.+.|-.++++-.-.|. .. .-+.+-..|.+ .++|+-+-.+-
T Consensus 166 l~~~~~~e~~gf~~iviS~K~S~--v~---~~i~ayr~la~~~dyPLHlGvTE 213 (366)
T 3noy_A 166 LRWSEKFEKWGFTNYKVSIKGSD--VL---QNVRANLIFAERTDVPLHIGITE 213 (366)
T ss_dssp HHHHHHHHHTTCCCEEEEEECSS--HH---HHHHHHHHHHHHCCCCEEECCSS
T ss_pred HHHHHHHHhCCCCeEEEeeecCC--hH---HHHHHHHHHHhccCCCEEEccCC
Confidence 34667778778776544432 10 01223233444 67887553333
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=2.2 Score=36.38 Aligned_cols=112 Identities=14% Similarity=0.015 Sum_probs=66.6
Q ss_pred ccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec--C-CC-CC
Q 022892 98 VQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG--T-MF-GY 172 (290)
Q Consensus 98 ~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g--s-~~-~y 172 (290)
+.++.+.+ .+|.+.++..+.. ...++.... ++.+.++.. |++|+..+. ..|-+. +++... + ++ ++
T Consensus 79 ~~~~~a~~~gad~v~l~~~~~~-~~~~~~~~~-~~~ig~sv~---t~~~~~~a~----~~gaD~-i~~~~~f~~~~~~g~ 148 (221)
T 1yad_A 79 GRVDIALFSTIHRVQLPSGSFS-PKQIRARFP-HLHIGRSVH---SLEEAVQAE----KEDADY-VLFGHVFETDCKKGL 148 (221)
T ss_dssp SCHHHHHTTTCCEEEECTTSCC-HHHHHHHCT-TCEEEEEEC---SHHHHHHHH----HTTCSE-EEEECCC--------
T ss_pred ChHHHHHHcCCCEEEeCCCccC-HHHHHHHCC-CCEEEEEcC---CHHHHHHHH----hCCCCE-EEECCccccCCCCCC
Confidence 46677766 6999999987643 344455433 777887653 788876654 356544 444332 1 11 11
Q ss_pred CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+ ..++..+..+++ .++||+.+.-=+ +.-...+.+.||+|+.+=+-+.
T Consensus 149 ~--~~~~~~l~~~~~~~~~pvia~GGI~-----------------------~~nv~~~~~~Ga~gv~vgs~i~ 196 (221)
T 1yad_A 149 E--GRGVSLLSDIKQRISIPVIAIGGMT-----------------------PDRLRDVKQAGADGIAVMSGIF 196 (221)
T ss_dssp ----CHHHHHHHHHHHCCSCEEEESSCC-----------------------GGGHHHHHHTTCSEEEESHHHH
T ss_pred C--CCCHHHHHHHHHhCCCCEEEECCCC-----------------------HHHHHHHHHcCCCEEEEhHHhh
Confidence 1 245667777776 789998742221 1223455678999999877663
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=94.26 E-value=1.1 Score=41.51 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCC-cEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 75 GLKILEKVKIAYDI-PIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi-~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
.-..|++..++-|- .++-++||.-++..+++ .++.+.+++..+. .+..|.| .++.- |++|+..-++.
T Consensus 12 ~a~~lr~ll~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a-------~s~~G~p---D~~~v-t~~em~~~~~~ 80 (307)
T 3lye_A 12 GAKKLRHLLENTDELIVCPGVYDGLSARTAMELGFKSLYMTGAGTT-------ASRLGQP---DLAIA-QLHDMRDNADM 80 (307)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECSHHHHHHHHHTTCSCEEECHHHHH-------HHHHCCC---SSSCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEecCcCHHHHHHHHHcCCCEEEeccHHHH-------HHhcCCC---CCCCC-CHHHHHHHHHh
Confidence 45567787777664 45779999999999988 6999999654332 2345777 56666 89999877776
Q ss_pred HHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc
Q 022892 153 VRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV 232 (290)
Q Consensus 153 i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~ 232 (290)
|.+ ++ .+++||++|-+.+- |..+.+....+..+..
T Consensus 81 i~r-----------~~------------------~~~~PviaD~d~Gy----------------g~~~~v~~~v~~l~~a 115 (307)
T 3lye_A 81 IAN-----------LD------------------PFGPPLIADMDTGY----------------GGPIMVARTVEHYIRS 115 (307)
T ss_dssp HHT-----------SS------------------TTSCCEEEECTTCS----------------SSHHHHHHHHHHHHHT
T ss_pred hhc-----------cC------------------CCCCcEEEECCCCC----------------CCHHHHHHHHHHHHHc
Confidence 642 11 03479999988763 3233333445555678
Q ss_pred CCCEEEEeeeCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 233 GVDGVFMEVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 233 GA~G~~IEkH~t~dka~-~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
||.|+-||-...|.|.- .+++.-.+.+++-+-++..+......|
T Consensus 116 Gaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~ 160 (307)
T 3lye_A 116 GVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLR 160 (307)
T ss_dssp TCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcC
Confidence 99999999876554321 133444555555444444444443334
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.86 Score=38.76 Aligned_cols=175 Identities=10% Similarity=0.053 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee--cCcc-cHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV--HETV-QCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~--~d~~-~~~~l~ 104 (290)
|.....+.++.+. +.|++.+-+..++. + |... +..+++.++++++..++++.... .|+. .++.+.
T Consensus 14 D~~~~~~~~~~~~----~~G~~~i~~~~~dg-~------~~~~-~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~ 81 (220)
T 2fli_A 14 DYANFASELARIE----ETDAEYVHIDIMDG-Q------FVPN-ISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFA 81 (220)
T ss_dssp CGGGHHHHHHHHH----HTTCCEEEEEEEBS-S------SSSC-BCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHH
T ss_pred CHHHHHHHHHHHH----HcCCCEEEEEeecC-C------CCCc-cccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHH
Confidence 3333344444444 46998864443331 1 1000 12345555555555576666644 4443 467666
Q ss_pred h-hcceecccCCccCCH-HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC---c
Q 022892 105 K-VADIIQIPAFLCRQT-DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD---P 179 (290)
Q Consensus 105 ~-~~d~~kIgs~~~~n~-~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d---L 179 (290)
+ .+|++.+........ ..++.+.+.+++++++.... |..|...+. . .+ -+.+++-.. ..+++....+ +
T Consensus 82 ~~gad~v~vh~~~~~~~~~~~~~~~~~g~~i~~~~~~~-t~~e~~~~~---~-~~-~d~vl~~~~-~~g~~g~~~~~~~~ 154 (220)
T 2fli_A 82 QAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPG-TPATALEPL---L-DL-VDQVLIMTV-NPGFGGQAFIPECL 154 (220)
T ss_dssp HHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTT-SCGGGGGGG---T-TT-CSEEEEESS-CTTCSSCCCCGGGH
T ss_pred HcCCCEEEEccCccccHHHHHHHHHHcCCcEEEEEcCC-CCHHHHHHH---H-hh-CCEEEEEEE-CCCCcccccCHHHH
Confidence 6 699999977766544 35566666788899988665 555544332 1 23 344444322 1223322222 2
Q ss_pred hhHHHHHh-c-----CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 180 RNLEWMRE-A-----NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 180 ~~i~~lk~-~-----~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
..+..+++ . ++||+++. |.+. .-+..+..+||+|+++=+-++
T Consensus 155 ~~i~~~~~~~~~~~~~~~i~v~G--------------------GI~~---~~~~~~~~~Gad~vvvGsai~ 202 (220)
T 2fli_A 155 EKVATVAKWRDEKGLSFDIEVDG--------------------GVDN---KTIRACYEAGANVFVAGSYLF 202 (220)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEES--------------------SCCT---TTHHHHHHHTCCEEEESHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEEC--------------------cCCH---HHHHHHHHcCCCEEEEChHHh
Confidence 33455555 3 67887642 2111 112235667999999987763
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.57 Score=39.69 Aligned_cols=168 Identities=13% Similarity=0.069 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEEeecC--c-cc-HHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVTDVHE--T-VQ-CEE 102 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s~~~d--~-~~-~~~ 102 (290)
|.+..++.++++. .|+|+++-.. . .+ +..|++.++++.+. .++++.....- + +. ++.
T Consensus 11 ~~~~~~~~~~~~~-----~~~diie~G~-p-------~~-----~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~ 72 (211)
T 3f4w_A 11 TLPEAMVFMDKVV-----DDVDIIEVGT-P-------FL-----IREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQL 72 (211)
T ss_dssp CHHHHHHHHHHHG-----GGCSEEEECH-H-------HH-----HHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHH
T ss_pred CHHHHHHHHHHhh-----cCccEEEeCc-H-------HH-----HhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHH
Confidence 5677777777763 2899887653 1 10 13456666666666 48888765422 2 22 455
Q ss_pred Hhh-hcceecccCCcc-CC-HHHHHHHHhcCCeEEEe-CCCCCCH-HHHHHHHHHHHHcCCCcEEEEeecCC-CCCCCCC
Q 022892 103 VGK-VADIIQIPAFLC-RQ-TDLLVAAAKTGKIINIK-KGQFCAS-SVMVNSAEKVRLAGNPNVMVCERGTM-FGYNDLI 176 (290)
Q Consensus 103 l~~-~~d~~kIgs~~~-~n-~~lL~~~a~~~~PVils-tG~~~tl-~e~~~Ave~i~~~Gn~~i~L~~~gs~-~~y~~~~ 176 (290)
+.+ .+|++-++.... .+ ..+++.+.+.++++++. .+.. |+ ++++. +...|-+- +-++.|.. ..++.
T Consensus 73 ~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~-t~~~~~~~----~~~~g~d~-i~v~~g~~g~~~~~-- 144 (211)
T 3f4w_A 73 LFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVD-DLPARVRL----LEEAGADM-LAVHTGTDQQAAGR-- 144 (211)
T ss_dssp HHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCS-SHHHHHHH----HHHHTCCE-EEEECCHHHHHTTC--
T ss_pred HHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHH----HHHcCCCE-EEEcCCCcccccCC--
Confidence 555 699999987654 33 45666777789998875 3333 44 33333 34456554 44444321 00111
Q ss_pred CCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 177 VDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 177 ~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.++..+..+++ + ++||.++. |.+ +.-+..+..+||+|+++=+-+.
T Consensus 145 ~~~~~i~~l~~~~~~~~i~~~g--------------------GI~---~~~~~~~~~~Gad~vvvGsai~ 191 (211)
T 3f4w_A 145 KPIDDLITMLKVRRKARIAVAG--------------------GIS---SQTVKDYALLGPDVVIVGSAIT 191 (211)
T ss_dssp CSHHHHHHHHHHCSSCEEEEES--------------------SCC---TTTHHHHHTTCCSEEEECHHHH
T ss_pred CCHHHHHHHHHHcCCCcEEEEC--------------------CCC---HHHHHHHHHcCCCEEEECHHHc
Confidence 24567788887 5 78987742 211 1224456788999999987653
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.85 Score=41.85 Aligned_cols=111 Identities=10% Similarity=0.073 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..|++..++-+..++-++||.-++..+++ .++.+.+++..+.+ +.+|.| .++.- |++|+...++.|.+
T Consensus 7 ~~lr~l~~~~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~-------~~~G~p---D~~~v-t~~em~~~~~~I~~ 75 (295)
T 1xg4_A 7 KAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAA-------GSLGLP---DLGIS-TLDDVLTDIRRITD 75 (295)
T ss_dssp HHHHHHHHHSSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHH-------TTTCCC---SSSCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEecCcCHHHHHHHHHcCCCEEEECchHhhh-------hhcCCC---CCCCC-CHHHHHHHHHHHHh
Confidence 45666667777888899999999999888 69999998875433 134666 55665 99999988877653
Q ss_pred cCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCC-CcccHHHHHHHHHHcCC
Q 022892 156 AGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG-LRELIPCIARTAIAVGV 234 (290)
Q Consensus 156 ~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g-~~~~~~~~a~aAva~GA 234 (290)
. .++||++|-+.+- | ..+.+...++..+..||
T Consensus 76 ~-------------------------------~~~PviaD~d~Gy----------------g~~~~~~~~~v~~l~~aGa 108 (295)
T 1xg4_A 76 V-------------------------------CSLPLLVDADIGF----------------GSSAFNVARTVKSMIKAGA 108 (295)
T ss_dssp H-------------------------------CCSCEEEECTTCS----------------SSSHHHHHHHHHHHHHHTC
T ss_pred h-------------------------------CCCCEEecCCccc----------------CCCHHHHHHHHHHHHHcCC
Confidence 2 2468888877653 2 23333344445567899
Q ss_pred CEEEEeeeCCC
Q 022892 235 DGVFMEVHDDP 245 (290)
Q Consensus 235 ~G~~IEkH~t~ 245 (290)
.|+-||--..|
T Consensus 109 ~gv~iEd~~~~ 119 (295)
T 1xg4_A 109 AGLHIEDQVGA 119 (295)
T ss_dssp SEEEEECBCSS
T ss_pred eEEEECCCCCC
Confidence 99999976533
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=94.00 E-value=0.94 Score=42.35 Aligned_cols=122 Identities=14% Similarity=0.113 Sum_probs=75.4
Q ss_pred HHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee--cCc-----ccHHH------------
Q 022892 42 ISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV--HET-----VQCEE------------ 102 (290)
Q Consensus 42 ~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~--~d~-----~~~~~------------ 102 (290)
.+.++|+|+|+.-.|.- |-..+. .+ ......+..+.+.|++.|+|++.++ ++. .+.++
T Consensus 118 ~a~~~GADAVk~lv~~g-~d~~~e-~~-~~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~ 194 (332)
T 3iv3_A 118 RLKEAGADAVKFLLYYD-VDGDPQ-VN-VQKQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAM 194 (332)
T ss_dssp HHHHTTCSEEEEEEEEC-TTSCHH-HH-HHHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHH
T ss_pred HHHHcCCCEEEEEEEcC-CCchHH-HH-HHHHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHH
Confidence 34447999999877652 111000 00 0012457778889999999999987 332 22222
Q ss_pred --H--hh-hcceecccCC-cc-------------CCH----HHHHHHHhcCCeEE-EeCCCCCCHHHHHHHHHHHHHcCC
Q 022892 103 --V--GK-VADIIQIPAF-LC-------------RQT----DLLVAAAKTGKIIN-IKKGQFCASSVMVNSAEKVRLAGN 158 (290)
Q Consensus 103 --l--~~-~~d~~kIgs~-~~-------------~n~----~lL~~~a~~~~PVi-lstG~~~tl~e~~~Ave~i~~~Gn 158 (290)
. .+ .+|++|+.-- ++ +.. .|-+.+..++.|++ |+-|. +.++++..++.....|.
T Consensus 195 R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~--~~~~fl~~v~~A~~aGa 272 (332)
T 3iv3_A 195 KVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGV--SAELFQETLVFAHKAGA 272 (332)
T ss_dssp HHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTC--CHHHHHHHHHHHHHHTC
T ss_pred HHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCC--CHHHHHHHHHHHHHcCC
Confidence 2 23 4899999732 22 111 24344567899965 78885 58899999988777885
Q ss_pred C-cEEEEeecC
Q 022892 159 P-NVMVCERGT 168 (290)
Q Consensus 159 ~-~i~L~~~gs 168 (290)
. .=++|=|.+
T Consensus 273 ~f~Gv~~GRnv 283 (332)
T 3iv3_A 273 KFNGVLCGRAT 283 (332)
T ss_dssp CCCEEEECHHH
T ss_pred CcceEEeeHHH
Confidence 2 456666654
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.96 Score=38.96 Aligned_cols=187 Identities=12% Similarity=0.104 Sum_probs=95.7
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-- 92 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-- 92 (290)
.++.++.-+-+. +.....+.++.+ .+.|++++-...-+ .-..+. . ..+++.++++.+..+.++..
T Consensus 9 ~~~~i~p~i~a~-d~~~~~~~i~~~----~~~G~d~i~l~~~d--g~f~~~-~-----~~~~~~i~~l~~~~~~~~~v~l 75 (230)
T 1rpx_A 9 SDIIVSPSILSA-NFSKLGEQVKAI----EQAGCDWIHVDVMD--GRFVPN-I-----TIGPLVVDSLRPITDLPLDVHL 75 (230)
T ss_dssp TSCEEEEBGGGS-CGGGHHHHHHHH----HHTTCCCEEEEEEB--SSSSSC-B-----CCCHHHHHHHGGGCCSCEEEEE
T ss_pred CceEEEEEeecC-CHHHHHHHHHHH----HHCCCCEEEEeecc--CCcccc-c-----ccCHHHHHHHHhccCCcEEEEE
Confidence 444455543333 444344444444 45799887665311 000011 1 12234444444444555444
Q ss_pred eecCcc-cHHHHhh-hcceecccCC--ccCC-HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 022892 93 DVHETV-QCEEVGK-VADIIQIPAF--LCRQ-TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 93 ~~~d~~-~~~~l~~-~~d~~kIgs~--~~~n-~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
-+.|+. .++.+.+ .+|++.++.. .... ..+++++.+.++.+++...+. |..|...++. .+- +.+++-..
T Consensus 76 ~vnd~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~~~g~~ig~~~~p~-t~~e~~~~~~----~~~-d~vl~~~~ 149 (230)
T 1rpx_A 76 MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPG-TPLTAIEYVL----DAV-DLVLIMSV 149 (230)
T ss_dssp ESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTT-CCGGGGTTTT----TTC-SEEEEESS
T ss_pred EecCHHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHH----hhC-CEEEEEEE
Confidence 344432 4555555 6999998887 4433 346677767788888887655 5555443321 233 44544432
Q ss_pred CCCCCCCCCCC---chhHHHHHh-c-----CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 168 TMFGYNDLIVD---PRNLEWMRE-A-----NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 168 s~~~y~~~~~d---L~~i~~lk~-~-----~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
. +++.....+ +..+..+++ . ++||+++. |.+ +.-+..++++||+|++
T Consensus 150 ~-pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~G--------------------GI~---~~n~~~~~~aGad~vv 205 (230)
T 1rpx_A 150 N-PGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDG--------------------GVG---PKNAYKVIEAGANALV 205 (230)
T ss_dssp C-TTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEES--------------------SCC---TTTHHHHHHHTCCEEE
T ss_pred c-CCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEEC--------------------CCC---HHHHHHHHHcCCCEEE
Confidence 2 223222222 344455665 4 78887742 211 1113335677999999
Q ss_pred EeeeCC
Q 022892 239 MEVHDD 244 (290)
Q Consensus 239 IEkH~t 244 (290)
+=+-++
T Consensus 206 vgSaI~ 211 (230)
T 1rpx_A 206 AGSAVF 211 (230)
T ss_dssp ESHHHH
T ss_pred EChhhh
Confidence 987764
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.058 Score=48.89 Aligned_cols=173 Identities=17% Similarity=0.155 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCCEEecc-ccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcc
Q 022892 33 MRMAKHIKSISTKVGLPLVFKS-SFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD--VHETVQCEEVGK-VAD 108 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V~~~-~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d 108 (290)
.++|+.+.+ .|+++|-.. ....+++ .+.|......++.++++++..++|++.. +.+.+.++.+.+ .+|
T Consensus 31 ~~~a~~~~~----~Ga~~i~~~e~v~~~~~----~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~~~~~~~~~~~aGad 102 (297)
T 2zbt_A 31 PEQAVIAEE----AGAVAVMALERVPADIR----AQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVD 102 (297)
T ss_dssp HHHHHHHHH----HTCSEEEECSSCHHHHH----HTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHHHHHHHHTTCS
T ss_pred HHHHHHHHH----CCCcEEEeccccchHHH----hhcCCccCCCHHHHHHHHHhcCCCeEEEeccCCHHHHHHHHHCCCC
Confidence 566666665 599887431 1110001 1222112234667888888899998753 344566666666 688
Q ss_pred eecccCCccCCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEee--cCC---------------
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCER--GTM--------------- 169 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~--gs~--------------- 169 (290)
++ .+++..+..++++.+.+. +.|+... .. +++++..+ ...|.+. +.+|- ++.
T Consensus 103 ~v-~~~~~~~~~~~~~~~~~~~~~i~l~~~--v~-~~~~~~~a----~~~Gad~-I~v~G~~~~g~~~e~~~~~~~~~~~ 173 (297)
T 2zbt_A 103 FI-DESEVLTPADEEHHIDKWKFKVPFVCG--AR-NLGEALRR----IAEGAAM-IRTKGEAGTGNVVEAVRHARTMWKE 173 (297)
T ss_dssp EE-EEETTSCCSCSSCCCCGGGCSSCEEEE--ES-SHHHHHHH----HHTTCSE-EEECCCSSSCCTHHHHHHHHHHHHH
T ss_pred EE-eeeCCCChHHHHHHHHHhCCCceEEee--cC-CHHHHHHH----HHcCCCE-EEEcccccCcchHHHHhhHHHHHHH
Confidence 88 555544444444444332 6676654 33 78887664 3456544 44441 000
Q ss_pred ----CCCCC---------CCCCchhHHHHHh-cCCCEE--EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 022892 170 ----FGYND---------LIVDPRNLEWMRE-ANCPVV--ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 233 (290)
Q Consensus 170 ----~~y~~---------~~~dL~~i~~lk~-~~~pV~--~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G 233 (290)
++|+. ...++..+..+++ .++||+ .+. ++ .. ..-+..+..+|
T Consensus 174 i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~G--GI---------------~~-----~e~i~~~~~aG 231 (297)
T 2zbt_A 174 IRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAG--GI---------------AT-----PADAALMMHLG 231 (297)
T ss_dssp HHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCS--SC---------------CS-----HHHHHHHHHTT
T ss_pred HHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcCCCcEEEeeC--CC---------------CC-----HHHHHHHHHcC
Confidence 00111 1245667778877 688876 432 11 01 33444567789
Q ss_pred CCEEEEeeeCC
Q 022892 234 VDGVFMEVHDD 244 (290)
Q Consensus 234 A~G~~IEkH~t 244 (290)
|+|+++=+-+.
T Consensus 232 adgvvvGsai~ 242 (297)
T 2zbt_A 232 MDGVFVGSGIF 242 (297)
T ss_dssp CSEEEECGGGG
T ss_pred CCEEEEchHHh
Confidence 99999988763
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=4 Score=37.56 Aligned_cols=133 Identities=20% Similarity=0.087 Sum_probs=71.5
Q ss_pred HHHHHHHH-hcCCeEEEeC-CCCCCHHHHHHHHHHHHHcCCCcEEEE-eecCCCC-C-------------CCCCCCchhH
Q 022892 120 TDLLVAAA-KTGKIINIKK-GQFCASSVMVNSAEKVRLAGNPNVMVC-ERGTMFG-Y-------------NDLIVDPRNL 182 (290)
Q Consensus 120 ~~lL~~~a-~~~~PVilst-G~~~tl~e~~~Ave~i~~~Gn~~i~L~-~~gs~~~-y-------------~~~~~dL~~i 182 (290)
.+.++++- ..++||++|- |...+.+++..+ ...|-+-|++. |-|+.+. . ..-......+
T Consensus 167 ~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a----~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l 242 (349)
T 1p0k_A 167 LKRIEQICSRVSVPVIVKEVGFGMSKASAGKL----YEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 242 (349)
T ss_dssp HHHHHHHHHHCSSCEEEEEESSCCCHHHHHHH----HHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH----HHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHH
Confidence 35566664 4689999995 654577776554 34677666665 4332110 0 0001123345
Q ss_pred HHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHH
Q 022892 183 EWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRN 260 (290)
Q Consensus 183 ~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~ 260 (290)
..+++ . ++||+.+..=.. ..-+..++++||++++|=+-+.-... .+++. --.+.
T Consensus 243 ~~v~~~~~~ipvia~GGI~~----------------------~~d~~k~l~~GAd~V~iG~~~l~~~~-~~g~~-~~~~~ 298 (349)
T 1p0k_A 243 AEIRSEFPASTMIASGGLQD----------------------ALDVAKAIALGASCTGMAGHFLKALT-DSGEE-GLLEE 298 (349)
T ss_dssp HHHHHHCTTSEEEEESSCCS----------------------HHHHHHHHHTTCSEEEECHHHHHHHH-HHHHH-HHHHH
T ss_pred HHHHHhcCCCeEEEECCCCC----------------------HHHHHHHHHcCCCEEEEcHHHHHHHh-hcCHH-HHHHH
Confidence 55555 4 799988544221 23345668899999999875421100 01100 00134
Q ss_pred HHHHHHHHHHHHHHhCCccc
Q 022892 261 LEELLEELVAIAKVSKGKQR 280 (290)
Q Consensus 261 l~~lv~~ir~~~~~lg~~~~ 280 (290)
++.+++.++..-...|.+.+
T Consensus 299 ~~~~~~~l~~~m~~~G~~~i 318 (349)
T 1p0k_A 299 IQLILEELKLIMTVLGARTI 318 (349)
T ss_dssp HHHHHHHHHHHHHHHTCCBH
T ss_pred HHHHHHHHHHHHHHhCCCCH
Confidence 66777777777777776444
|
| >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A | Back alignment and structure |
|---|
Probab=93.67 E-value=2.9 Score=41.60 Aligned_cols=193 Identities=10% Similarity=0.073 Sum_probs=114.6
Q ss_pred CCeEEEEc-cCCc-----------cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHH
Q 022892 15 EPFFLLAG-PNVI-----------ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKV 82 (290)
Q Consensus 15 ~~~~iIAg-pcsi-----------en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~ 82 (290)
.++.+|.| .++- .+.+..++.|+++++ .||+++=-. | + ......++.++++...
T Consensus 313 ~~~~iiGer~N~Tg~dsf~~~~~~~~~~~a~~~A~~~v~----~GAdiIDIg-----p----g-~~~v~~~ee~~rvv~~ 378 (566)
T 1q7z_A 313 DHFVVIGERINPAGRKKLWAEMQKGNEEIVIKEAKTQVE----KGAEVLDVN-----F----G-IESQIDVRYVEKIVQT 378 (566)
T ss_dssp SSCEEEEEEECCTTCHHHHHHHHTTCCHHHHHHHHHHHH----TTCSEEEEE-----C----S-SGGGSCHHHHHHHHHH
T ss_pred ccceEEEEEecCCCChhHHHHhhcCCHHHHHHHHHHHHH----CCCCEEEEC-----C----C-CCCCCHHHHHHHHHHH
Confidence 56788888 4431 134667777777776 599987654 1 1 1111114555554433
Q ss_pred -HHhcCCcEEEeecCcccHHHHhhh---ccee-cccCCccCC-HHHHHHHHhcCCeEEEeCC---CCCC----HHHHHHH
Q 022892 83 -KIAYDIPIVTDVHETVQCEEVGKV---ADII-QIPAFLCRQ-TDLLVAAAKTGKIINIKKG---QFCA----SSVMVNS 149 (290)
Q Consensus 83 -~~~~Gi~~~s~~~d~~~~~~l~~~---~d~~-kIgs~~~~n-~~lL~~~a~~~~PVilstG---~~~t----l~e~~~A 149 (290)
.++.++|+.-+-++++.++...+. .+++ -|...+ .+ ..++..+++.+.||++..- +..| ++...+.
T Consensus 379 i~~~~~vpisIDT~~~~v~eaal~~~~G~~iINdis~~~-~~~~~~~~~~~~~g~~vV~m~~~~~~p~t~~~~~~~l~~~ 457 (566)
T 1q7z_A 379 LPYVSNVPLSLDIQNVDLTERALRAYPGRSLFNSAKVDE-EELEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKA 457 (566)
T ss_dssp HHHHTCSCEEEECCCHHHHHHHHHHCSSCCEEEEEESCH-HHHHHHHHHHHHHCCEEEEESCSSSCCCSHHHHHHHHHHH
T ss_pred HHhhCCceEEEeCCCHHHHHHHHHhcCCCCEEEECCcch-hhHHHHHHHHHHhCCeEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 345699999999999888876553 4442 233322 11 4567778899999999653 2223 5556667
Q ss_pred HHHHHHcCCCcEEEEeecC---CCCCCCCCCCc---hhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCC--Cccc
Q 022892 150 AEKVRLAGNPNVMVCERGT---MFGYNDLIVDP---RNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG--LREL 221 (290)
Q Consensus 150 ve~i~~~Gn~~i~L~~~gs---~~~y~~~~~dL---~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g--~~~~ 221 (290)
++.+.+.|-++=+++..|. .|+. -|+ +.+..++++++|+.+-.|. .|.+ .++.
T Consensus 458 ~~~a~~~Gi~~~IilDPg~~~igfgk----~~~~~l~~~~~~~~~g~p~l~G~Sn---------------ksf~~~~~~~ 518 (566)
T 1q7z_A 458 LKILERHDFSDRVIFDPGVLPLGAEG----KPVEVLKTIEFISSKGFNTTVGLSN---------------LSFGLPDRSY 518 (566)
T ss_dssp HHHHHHTTCGGGEEEECCCCCTTTTC----CHHHHHHHHHHHHHTTCEECCBGGG---------------GSTTSTTHHH
T ss_pred HHHHHHCCCCCcEEEeCCCCcccCcH----HHHHHHHHHHHHHhCCCCEEEEeCc---------------ccccCCHHHH
Confidence 7778888853337788887 3433 244 4455555568998653222 1111 1333
Q ss_pred HH-HHHHHHHHcCCCEEEEeeeC
Q 022892 222 IP-CIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 222 ~~-~~a~aAva~GA~G~~IEkH~ 243 (290)
+. ..+..|+..|++ ++=.|.
T Consensus 519 l~~t~a~~a~~~G~~--i~rvh~ 539 (566)
T 1q7z_A 519 YNTAFLVLGISKGLS--SAIMNP 539 (566)
T ss_dssp HHHHHHHHHHHTTCC--EEEECT
T ss_pred HHHHHHHHHHHcCCC--EEEECC
Confidence 22 234457889999 555585
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.26 Score=44.12 Aligned_cols=75 Identities=11% Similarity=0.041 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccC----CHHHHHHHHh-c-----CCeEEEeCCCCCC
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCR----QTDLLVAAAK-T-----GKIINIKKGQFCA 142 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~----n~~lL~~~a~-~-----~~PVilstG~~~t 142 (290)
+.++.+.+.++++|+.++.++++.++++...+ ..+++-|+.++.+ ++..++.+.+ . +.||+-.-|.. |
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~-s 219 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYS-R 219 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCC-S
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCCC-C
Confidence 45777888888999999999999998887766 6899999887763 3333333322 2 67999999988 8
Q ss_pred HHHHHHH
Q 022892 143 SSVMVNS 149 (290)
Q Consensus 143 l~e~~~A 149 (290)
++++...
T Consensus 220 ~~dv~~l 226 (254)
T 1vc4_A 220 KEELKAL 226 (254)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9988763
|
| >4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.95 Score=43.97 Aligned_cols=175 Identities=14% Similarity=0.069 Sum_probs=108.7
Q ss_pred hhHHhhhc-CCCCeEEEEccCCccCHHHHHHHHHHHHHHHH-----HcCCCEEeccccccCCCCCcccCCCCChhHHHHH
Q 022892 5 TALFNQLK-AAEPFFLLAGPNVIESEEHIMRMAKHIKSIST-----KVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI 78 (290)
Q Consensus 5 ~~~~~~i~-~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~-----~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~ 78 (290)
|.||+-=+ .-+|+.+-.+++-..+.+..-+..+++.+... +.|+|.|....-. -. .+-+.+
T Consensus 79 tvL~rhE~tf~n~p~ia~~V~D~~~e~~~~~~~~~~~~~~~~rvg~~~~~D~ial~~~s------------~d-pe~~~~ 145 (446)
T 4djd_C 79 TELFRHDKRFYHETAIAIQVSDNLSSEELKAKVEAINGLNFDRVGQHYTIQAIAIRHDA------------DD-PAAFKA 145 (446)
T ss_dssp CCSSGGGSCCCSCCEEEEEEETTSCHHHHHHHHHHHTTCCEEETTEEECCCEEEEECCS------------SS-THHHHH
T ss_pred eeEEeCCcCCCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHHHHHHhccCcEEEEEeCC------------CC-HHHHHH
Confidence 44555444 34666777788775555555566665554332 2335554432111 11 233444
Q ss_pred -HHHHHHhcCCcEEEeecCcccHHHHhhh-cce-ecccCCccCCHH-HHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 79 -LEKVKIAYDIPIVTDVHETVQCEEVGKV-ADI-IQIPAFLCRQTD-LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 79 -L~~~~~~~Gi~~~s~~~d~~~~~~l~~~-~d~-~kIgs~~~~n~~-lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
++++.+..++|+.-+-+|++.++...+. .+. --|.|.+-.|++ +...+++.+.||++... .++...+.++.+.
T Consensus 146 vVk~V~e~~dvPL~IDS~dpevleaALea~a~~~plI~sat~dn~e~m~~lAa~y~~pVi~~~~---dl~~lkelv~~a~ 222 (446)
T 4djd_C 146 AVASVAAATQLNLVLMADDPDVLKEALAGVADRKPLLYAATGANYEAMTALAKENNCPLAVYGN---GLEELAELVDKIV 222 (446)
T ss_dssp HHHHHHTTCCSEEEEECSCHHHHHHHHGGGGGGCCEEEEECTTTHHHHHHHHHHTTCCEEEECS---SHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEecCCHHHHHHHHHhhcCcCCeeEecchhhHHHHHHHHHHcCCcEEEEec---cHHHHHHHHHHHH
Confidence 5566678999999999999998887763 231 234444556874 66777889999999865 7999999999999
Q ss_pred HcCCCcEEEEeecC-CCCCCCCCCCchhHHHH------HhcCCCEEEeCCC
Q 022892 155 LAGNPNVMVCERGT-MFGYNDLIVDPRNLEWM------REANCPVVADVTH 198 (290)
Q Consensus 155 ~~Gn~~i~L~~~gs-~~~y~~~~~dL~~i~~l------k~~~~pV~~D~sH 198 (290)
+.|-++| ++.-|+ .+.|.. +.++ .+..+ +.+++||+...+.
T Consensus 223 ~~GI~~I-vLDPG~~g~~~t~-~~~~-~iRr~AL~~~d~~LgyPvi~~~sr 270 (446)
T 4djd_C 223 ALGHKQL-VLDPGARETSRAI-ADFT-QIRRLAIKKRFRSFGYPIIALTTA 270 (446)
T ss_dssp HTTCCCE-EEECCCCSHHHHH-HHHH-HHHHHHHHSCCGGGCSCBEEECCC
T ss_pred HCCCCcE-EECCCchhHHHHH-HHHH-HHHHHhhhccCcccCCCEEeccCC
Confidence 9998765 677777 332211 1121 11222 2268999876655
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=93.52 E-value=1.3 Score=41.11 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=79.0
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.|++..++-+..++-++||.-++..+++ .+|.+.+++..+.+. .+|.| .++.- |++|+...++.|.+.
T Consensus 30 ~lr~l~~~~~~i~~~~ayD~~sA~i~e~aGfdai~vs~~~~a~~-------~lG~p---D~~~v-t~~em~~~~~~I~r~ 98 (318)
T 1zlp_A 30 TMHRLIEEHGSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAA-------MLGLP---DFGLL-TTTEVVEATRRITAA 98 (318)
T ss_dssp HHHHHHHHSSSEEEEEECSHHHHHHHHHTTCSEEEECHHHHHHH-------HHCCC---SSSCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHhhH-------hcCCC---CCCCC-CHHHHHHHHHHHHhh
Confidence 4666666777888999999999999988 699999998765542 23666 45555 999999988776532
Q ss_pred CCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCE
Q 022892 157 GNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 236 (290)
Q Consensus 157 Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G 236 (290)
- .++||++|-+.+- |..+.+...++..+..||.|
T Consensus 99 ~------------------------------~~~PviaD~d~Gy----------------g~~~~v~~tv~~l~~aGaag 132 (318)
T 1zlp_A 99 A------------------------------PNLCVVVDGDTGG----------------GGPLNVQRFIRELISAGAKG 132 (318)
T ss_dssp S------------------------------SSSEEEEECTTCS----------------SSHHHHHHHHHHHHHTTCCE
T ss_pred c------------------------------cCCCEEEeCCCCC----------------CCHHHHHHHHHHHHHcCCcE
Confidence 1 0579999988763 32333344455556789999
Q ss_pred EEEeeeCC
Q 022892 237 VFMEVHDD 244 (290)
Q Consensus 237 ~~IEkH~t 244 (290)
+-||--..
T Consensus 133 v~iED~~~ 140 (318)
T 1zlp_A 133 VFLEDQVW 140 (318)
T ss_dssp EEEECBCS
T ss_pred EEECCCCC
Confidence 99997654
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=93.51 E-value=0.83 Score=40.92 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCCcEEEeecC----------cccHHH----Hhh-hcceecccCCccCCHHHHHHHH-hcCC-eEEEe
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHE----------TVQCEE----VGK-VADIIQIPAFLCRQTDLLVAAA-KTGK-IINIK 136 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d----------~~~~~~----l~~-~~d~~kIgs~~~~n~~lL~~~a-~~~~-PVils 136 (290)
+.+..+++.|+++|++++.+.+- ++.+.. ..+ .+|++|++.. .+.+.++++. ..+. ||+.+
T Consensus 125 ~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~~~--~~~e~~~~~~~~~~~~pV~as 202 (263)
T 1w8s_A 125 EELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKYT--GDPKTFSWAVKVAGKVPVLMS 202 (263)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEECC--SSHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEcCC--CCHHHHHHHHHhCCCCeEEEE
Confidence 45667888889999999988753 233332 223 5999999942 3566667654 4577 99999
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCC
Q 022892 137 KGQFC-ASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 137 tG~~~-tl~e~~~Ave~i~~~Gn~ 159 (290)
=|... +.++.++-+..+...|..
T Consensus 203 GGi~~~~~~~~l~~i~~~~~aGA~ 226 (263)
T 1w8s_A 203 GGPKTKTEEDFLKQVEGVLEAGAL 226 (263)
T ss_dssp CCSCCSSHHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCe
Confidence 99875 688888777777778875
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=93.46 E-value=1.3 Score=40.24 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.|++..++ + .++-++||.-++..+++ .++.+.+++..+.+ ..|.| .++.- |++|+...++.|...
T Consensus 9 ~lr~l~~~-~-i~~~~a~D~~sA~~~~~aG~~ai~vsg~s~a~--------~~G~p---D~~~v-t~~em~~~~~~I~~~ 74 (275)
T 2ze3_A 9 SFHALHQT-G-FLLPNAWDVASARLLEAAGFTAIGTTSAGIAH--------ARGRT---DGQTL-TRDEMGREVEAIVRA 74 (275)
T ss_dssp HHHHHHHH-C-EEECEESSHHHHHHHHHHTCSCEEECHHHHHH--------HSCCC---SSSSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHhhC-C-eeEecccCHHHHHHHHHcCCCEEEECcHHHHH--------hCCCC---CCCCC-CHHHHHHHHHHHHhh
Confidence 45555555 7 78889999999999988 69999999765543 24655 34555 899998888766532
Q ss_pred CCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCE
Q 022892 157 GNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 236 (290)
Q Consensus 157 Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G 236 (290)
.++||+.|-+.+- ++..+.+...++.-+..||.|
T Consensus 75 -------------------------------~~~pviaD~d~Gy---------------g~~~~~~~~~v~~l~~aGaag 108 (275)
T 2ze3_A 75 -------------------------------VAIPVNADIEAGY---------------GHAPEDVRRTVEHFAALGVAG 108 (275)
T ss_dssp -------------------------------CSSCEEEECTTCS---------------SSSHHHHHHHHHHHHHTTCSE
T ss_pred -------------------------------cCCCEEeecCCCC---------------CCCHHHHHHHHHHHHHcCCcE
Confidence 1357777777652 112223333444445678888
Q ss_pred EEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 237 VFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 237 ~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
+-||--..+ .++.-.+.+++.+-++.++.....+|.
T Consensus 109 v~iED~~~~-----~~k~l~~~~e~~~~I~aa~~a~~~~g~ 144 (275)
T 2ze3_A 109 VNLEDATGL-----TPTELYDLDSQLRRIEAARAAIDASGV 144 (275)
T ss_dssp EEEECBCSS-----SSSCBCCHHHHHHHHHHHHHHHHHHTS
T ss_pred EEECCCcCC-----CCCccCCHHHHHHHHHHHHHhHhhcCC
Confidence 888854321 233444555555555555554443343
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.39 Score=45.42 Aligned_cols=135 Identities=15% Similarity=0.005 Sum_probs=72.1
Q ss_pred HHHHHHH-hcCCeEEEe-CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CC-C---C-----CC-CCCC---chhHHH
Q 022892 121 DLLVAAA-KTGKIINIK-KGQFCASSVMVNSAEKVRLAGNPNVMVCERGT-MF-G---Y-----ND-LIVD---PRNLEW 184 (290)
Q Consensus 121 ~lL~~~a-~~~~PVils-tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~~-~---y-----~~-~~~d---L~~i~~ 184 (290)
+.++++. .+++||++| .|...+.++.+.++ ..|-+-|.+--+|. ++ . + .. .+.- ..+++.
T Consensus 196 ~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~----~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~ 271 (365)
T 3sr7_A 196 KHLSDYAKKLQLPFILKEVGFGMDVKTIQTAI----DLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLN 271 (365)
T ss_dssp HHHHHHHHHCCSCEEEEECSSCCCHHHHHHHH----HHTCCEEECCCBC--------------CGGGTTCSCBHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCHHHHHHHH----HcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHH
Confidence 5667664 469999999 55445777766654 45765555543333 22 0 0 00 0111 134444
Q ss_pred HHhc--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHH
Q 022892 185 MREA--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLE 262 (290)
Q Consensus 185 lk~~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~ 262 (290)
.+.. .+||+.|..=. .| ..++ .|+++||++++|=+-+--. ..+.+. .--.+.++
T Consensus 272 v~~~~~~ipvia~GGI~----------------~g-----~Dv~-KaLalGAdaV~ig~~~l~a-~~~~G~-~~v~~~l~ 327 (365)
T 3sr7_A 272 AQPLMDKVEILASGGIR----------------HP-----LDII-KALVLGAKAVGLSRTMLEL-VEQHSV-HEVIAIVN 327 (365)
T ss_dssp HGGGTTTSEEEECSSCC----------------SH-----HHHH-HHHHHTCSEEEESHHHHHH-HHHSCH-HHHHHHHH
T ss_pred HHHhcCCCeEEEeCCCC----------------CH-----HHHH-HHHHcCCCEEEECHHHHHH-HHhcCh-HHHHHHHH
Confidence 4442 67898743211 12 3444 5688999999997754100 000110 00013567
Q ss_pred HHHHHHHHHHHHhCCcccccc
Q 022892 263 ELLEELVAIAKVSKGKQRMNI 283 (290)
Q Consensus 263 ~lv~~ir~~~~~lg~~~~~~~ 283 (290)
.+.++++.+-..+|.+++-++
T Consensus 328 ~l~~eL~~~m~~~G~~si~eL 348 (365)
T 3sr7_A 328 GWKEDLRLIMCALNCQTIAEL 348 (365)
T ss_dssp HHHHHHHHHHHHTTCSSTGGG
T ss_pred HHHHHHHHHHHHhCCcCHHHh
Confidence 777888888888888665444
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.21 Score=45.74 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=60.3
Q ss_pred HHHHHHhcCCcEEEeecCcccHHH-Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEE-VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~-l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.+++++++|++-+. .+.+. +++ .+|++-|.+-+-.+.++..++.+.||+|++.+.++.|++|.+..++..++.
T Consensus 70 a~~~a~~~g~~~~y-----~d~~ell~~~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 144 (393)
T 4fb5_A 70 AEARAGEFGFEKAT-----ADWRALIADPEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERS 144 (393)
T ss_dssp HHHHHHHHTCSEEE-----SCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCeec-----CCHHHHhcCCCCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhc
Confidence 45677889997432 23344 444 699999999999999999999999999999999999999999988876655
Q ss_pred C
Q 022892 157 G 157 (290)
Q Consensus 157 G 157 (290)
|
T Consensus 145 g 145 (393)
T 4fb5_A 145 G 145 (393)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.25 Score=44.44 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh--cceecccCCccCC----HHHHHHHH-hc--CCeEEEeCCCCCCHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV--ADIIQIPAFLCRQ----TDLLVAAA-KT--GKIINIKKGQFCASS 144 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~--~d~~kIgs~~~~n----~~lL~~~a-~~--~~PVilstG~~~tl~ 144 (290)
+.++.|.++++++|+.++.++++.+.++.+.+. ++++-|=-++... +.....+. .. +.+++-..|.. |.+
T Consensus 137 ~~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~g~~iIGinnr~l~t~~~d~~~~~~l~~~ip~~~~vIaEsGI~-t~e 215 (251)
T 1i4n_A 137 EQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIK-DPR 215 (251)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCC-CGG
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCcccccCCCCHHHHHHHHHhCCCCCEEEEeCCCC-CHH
Confidence 679999999999999999999999999887654 7888777666522 22222222 22 44666666666 777
Q ss_pred HHHHHHH
Q 022892 145 VMVNSAE 151 (290)
Q Consensus 145 e~~~Ave 151 (290)
++..+.+
T Consensus 216 dv~~~~~ 222 (251)
T 1i4n_A 216 ELKDLRG 222 (251)
T ss_dssp GHHHHTT
T ss_pred HHHHHHH
Confidence 7766543
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=93.31 E-value=2.1 Score=37.86 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=99.2
Q ss_pred HHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCcc-CCHHH
Q 022892 44 TKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLC-RQTDL 122 (290)
Q Consensus 44 ~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~-~n~~l 122 (290)
.++|.|+++-+.= .+...+.-++.++++. +.++|++-.|.+++++ ...+|.+-++|=.. +|..+
T Consensus 28 ~~~GtD~i~vGGs-----------~gvt~~~~~~~v~~ik-~~~~Pvvlfp~~~~~v---~~gaD~~l~pslln~~~~~~ 92 (228)
T 3vzx_A 28 CESGTDAVIIGGS-----------DGVTEDNVLRMMSKVR-RFLVPCVLEVSAIEAI---VPGFDLYFIPSVLNSKNADW 92 (228)
T ss_dssp HTSSCSEEEECCC-----------SCCCHHHHHHHHHHHT-TSSSCEEEECSCGGGC---CSCCSEEEEEEETTBSSGGG
T ss_pred HHcCCCEEEECCc-----------CCCCHHHHHHHHHHhh-ccCCCEEEeCCCHHHc---cccCCEEEEeeecCCCCcch
Confidence 3689999988641 1222223344444444 4999999999998654 45789888887544 45555
Q ss_pred H-----HHHHhcC------CeEE----EeCCCC-----------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCC
Q 022892 123 L-----VAAAKTG------KIIN----IKKGQF-----------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLI 176 (290)
Q Consensus 123 L-----~~~a~~~------~PVi----lstG~~-----------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~ 176 (290)
+ +.+.+.| .+|- +=++.+ .+++++..-+..-.--| -+++=++- + +-+
T Consensus 93 i~g~~~~a~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~~g-~~~VYld~-s--G~~--- 165 (228)
T 3vzx_A 93 IVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQ-LPIFYLEY-S--GVL--- 165 (228)
T ss_dssp TTHHHHHHHHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTT-CSEEEEEC-T--TSC---
T ss_pred hhhHHHHHHHHcCCCCcccceeeeEEEEECCCCcceeeecccCCCCHHHHHHHHHHHHHcC-CCEEEecC-C--CCc---
Confidence 4 5565566 3333 233333 02255433332222122 34555554 3 111
Q ss_pred CCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCC
Q 022892 177 VDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254 (290)
Q Consensus 177 ~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~ 254 (290)
.|+..+..+++ . ++||.+- + |.+. +..++.+. .||||+++=+-+.-
T Consensus 166 ~~~~~i~~i~~~~~~~Pv~vG----------------G----GI~t--~e~a~~~~-~gAD~VVVGSa~v~--------- 213 (228)
T 3vzx_A 166 GDIEAVKKTKAVLETSTLFYG----------------G----GIKD--AETAKQYA-EHADVIVVGNAVYE--------- 213 (228)
T ss_dssp CCHHHHHHHHHHCSSSEEEEE----------------S----SCCS--HHHHHHHH-TTCSEEEECTHHHH---------
T ss_pred CCHHHHHHHHHhcCCCCEEEe----------------C----CCCC--HHHHHHHH-hCCCEEEEChHHhc---------
Confidence 27788888988 7 7998771 1 2111 34455444 69999999877632
Q ss_pred CCChHHHHHHHHHHH
Q 022892 255 QWPLRNLEELLEELV 269 (290)
Q Consensus 255 sl~p~~l~~lv~~ir 269 (290)
+|+.++++++.++
T Consensus 214 --~p~~~~~~v~a~~ 226 (228)
T 3vzx_A 214 --DFDRALKTVAAVK 226 (228)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHh
Confidence 4777788877664
|
| >2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=1.6 Score=42.26 Aligned_cols=188 Identities=13% Similarity=0.080 Sum_probs=112.1
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHH-HcC----CCEEeccccccCCCCCcccCCCCChhHHHHH-HHHHHHhcC
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSIST-KVG----LPLVFKSSFDKANRTSSKSFRGPGMVEGLKI-LEKVKIAYD 87 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~-~~G----~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~-L~~~~~~~G 87 (290)
-+|+-|.++++-.-+.+...+..+...+.+. +.| +|+|-..... -. .+.+.+ ++.+.+..+
T Consensus 89 ~np~~ia~eI~D~~~~~~~~~~~~~~~~~~~~~~g~~~~aD~I~l~~~~------------~d-pe~~~~~Vk~V~e~~d 155 (445)
T 2h9a_A 89 EHPCGLAILVEDTLSEGEIKERVEKINKLVFDRVGQMHSVNLVALKGSS------------QD-AATFAKAVATAREVTD 155 (445)
T ss_dssp CSCCEEEEEEETTSCHHHHHHHHHHHHTCEEEETTEEEECCEEEEECTT------------CC-HHHHHHHHHHHHHHCC
T ss_pred CCCCeEEEEEecCCChHhHHHHHHHhhhHHHHhhcccccCcEEEEeCCC------------CC-HHHHHHHHHHHHHhcC
Confidence 4577788887753344444444444332211 234 6766554311 11 356676 445556679
Q ss_pred CcEEEeecCcccHHHHhh-hcc---eecccCCccCCHH-HHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 022892 88 IPIVTDVHETVQCEEVGK-VAD---IIQIPAFLCRQTD-LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVM 162 (290)
Q Consensus 88 i~~~s~~~d~~~~~~l~~-~~d---~~kIgs~~~~n~~-lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~ 162 (290)
+|+.-+ +|++.++...+ ..+ ++ .|-+-.|++ ++..+.+.+.||++... +++..++-++.+.+.|-++|+
T Consensus 156 vPlsID-~dp~vleaale~~~d~~pLI--ns~t~en~~~~~~la~~y~~~vV~~~~---~l~~l~~lv~~a~~~Gi~~Ii 229 (445)
T 2h9a_A 156 LPFILI-GTPEQLAAALETEGANNPLL--YAATADNYEQMVELAKKYNVPLTVSAK---GLDALAELVQKITALGYKNLI 229 (445)
T ss_dssp SCEEEE-SCHHHHHHHHHHHGGGCCEE--EEECTTTHHHHHHHHHHHTCCEEEECS---SHHHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEE-CCHHHHHHHHHhcCCCCCEE--EECCHHHHHHHHHHHHHhCCeEEEEcC---CHHHHHHHHHHHHHCCCCcEE
Confidence 999999 99999888776 344 33 222333654 55667788999999764 799999999999999988877
Q ss_pred EEeecCC-CCCCCCCCCchhHHHH--H-h---cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 163 VCERGTM-FGYNDLIVDPRNLEWM--R-E---ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 163 L~~~gs~-~~y~~~~~dL~~i~~l--k-~---~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
+.-++. +.+.- -|+..|..+ + . +++|++...+.- +.+ +-..+|..++..||+
T Consensus 230 -LDP~~~~~~~sl--~~~~~IR~~al~~~d~~lg~P~i~~vs~~-----------------d~~-~ea~lA~~~~~~Gas 288 (445)
T 2h9a_A 230 -LDPQPENISEGL--FYQTQIRRLAIKKLFRPFGYPTIAFALDE-----------------NPY-QAVMEASVYIAKYAG 288 (445)
T ss_dssp -EECCCSSHHHHH--HHHHHHHHHHHHSCCGGGCSCBEEECCCS-----------------SHH-HHHHHHHHHHHTTCS
T ss_pred -EcCCchhHHHHH--HHHHHHHHhhhcCCCcccCCCeeecCCch-----------------hHH-HHHHHHHHHHHcCCe
Confidence 565542 22211 134444443 1 1 467887766543 212 223344455789999
Q ss_pred EEEEeee
Q 022892 236 GVFMEVH 242 (290)
Q Consensus 236 G~~IEkH 242 (290)
+|+=.|
T Consensus 289 -Il~~~~ 294 (445)
T 2h9a_A 289 -IIVLNT 294 (445)
T ss_dssp -EEEECC
T ss_pred -EEEecC
Confidence 444444
|
| >3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.42 Score=45.85 Aligned_cols=111 Identities=17% Similarity=0.250 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHH-HHHcCCCEEeccc-cccCCCCCcccCC--CCChhHHHHHHHHHHHhcCCcEEE--ee-------
Q 022892 28 SEEHIMRMAKHIKSI-STKVGLPLVFKSS-FDKANRTSSKSFR--GPGMVEGLKILEKVKIAYDIPIVT--DV------- 94 (290)
Q Consensus 28 n~~~~le~Ak~L~~~-a~~~G~~~V~~~~-~~k~~rts~~~~~--g~~~~~~l~~L~~~~~~~Gi~~~s--~~------- 94 (290)
|++..+++|+.|++. .+++|...|.... +....|...+.+. .-.+..|++.|.++.++.|+.|-- ++
T Consensus 34 ~e~~i~~~ad~~~~~Gl~~~G~~~~~iDDgW~~~~rd~~G~~~~~~~kFP~Gl~~l~~~ih~~Glk~Giw~~~g~~tC~~ 113 (404)
T 3hg3_A 34 SEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAG 113 (404)
T ss_dssp SHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCSSCCTTSCCCBCTTTSTTHHHHHHHHHHHTTCEEEEEEESSSBCTTS
T ss_pred CHHHHHHHHHHHHHCCcHhhCCeEEEECCCcCCCCCCCCCCeeeChhhcCCCHHHHHHHHHHCCCeeEEEecCCccccCC
Confidence 899999999998764 3467988766553 3322454433332 111246999999999999999864 11
Q ss_pred ------cCcccHHHHhh-hcceecccCCccCCH--------HHHHHHHhcCCeEEEeCC
Q 022892 95 ------HETVQCEEVGK-VADIIQIPAFLCRQT--------DLLVAAAKTGKIINIKKG 138 (290)
Q Consensus 95 ------~d~~~~~~l~~-~~d~~kIgs~~~~n~--------~lL~~~a~~~~PVilstG 138 (290)
+....++.+++ .+|++|+-....... .+-+++.++|+||++|..
T Consensus 114 ~pGs~~~~~~da~~fa~WGvDylK~D~C~~~~~~~~~~~y~~m~~AL~~tGRpi~~sc~ 172 (404)
T 3hg3_A 114 FPGSFGYYDIDAQTFADWGVDLLKFAGCYCDSLENLADGYKHMSLALNRTGRSIVYSCE 172 (404)
T ss_dssp SBCCTTCHHHHHHHHHHHTCCEEEEECCSCSCHHHHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCccHHHHHHHHHHHHHhCCcEEEecCcCCCcchhHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 22234555666 799999876544322 244667789999999854
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=93.25 E-value=1.6 Score=39.05 Aligned_cols=189 Identities=14% Similarity=0.127 Sum_probs=110.3
Q ss_pred hhHHhhhcCCCCeEEEEccCC-------ccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH
Q 022892 5 TALFNQLKAAEPFFLLAGPNV-------IESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK 77 (290)
Q Consensus 5 ~~~~~~i~~~~~~~iIAgpcs-------ien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~ 77 (290)
.+++..+...+++.||||.=- |.......++|+...+ . +.++.- .|-+..|+| ++.
T Consensus 29 ~~f~~al~~~~~~~vIaE~K~aSPSkG~i~~~~~~~~iA~~y~~----~-A~~IsV-------lTd~~~F~g-----s~~ 91 (251)
T 1i4n_A 29 HRFLEVLSGKERVKIIAEFKKASPSAGDINADASLEDFIRMYDE----L-ADAISI-------LTEKHYFKG-----DPA 91 (251)
T ss_dssp CHHHHHHCCSSSCEEEEEECSBCSSSCBSCTTCCHHHHHHHHHH----H-CSEEEE-------ECCCSSSCC-----CTH
T ss_pred cCHHHHHhhCCCceEEEeecCCCCCCCccCCCCCHHHHHHHHHH----h-CCceEE-------EecccccCC-----CHH
Confidence 456677754455899998642 2111134566666554 3 544432 122222443 456
Q ss_pred HHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcceecccCCccCC---HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTD--VHETVQCEEVGK-VADIIQIPAFLCRQ---TDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~~n---~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
.|+++++..++|++.- +.|+.++..+.. .+|++-+=...+.. ..|++.+-++|+-+++... |.+|+..|++
T Consensus 92 dL~~ir~~v~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~a~l~~~~l~~l~~~a~~lGl~~lvEv~---~~eE~~~A~~ 168 (251)
T 1i4n_A 92 FVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVH---SREDLEKVFS 168 (251)
T ss_dssp HHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEEC---SHHHHHHHHT
T ss_pred HHHHHHHhCCCCEEEeeCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHh
Confidence 6777777789999974 345666666555 58875444444433 2456666778999999987 8999888754
Q ss_pred HHHHc-CCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHH
Q 022892 152 KVRLA-GNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIAR 227 (290)
Q Consensus 152 ~i~~~-Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~ 227 (290)
. |. +++-++- .+|....+|+.....|.. . +.+|+.- +. + + . +.-+.
T Consensus 169 ----l~g~-~iIGinn---r~l~t~~~d~~~~~~l~~~ip~~~~vIaE-sG-I--------------~-t-----~edv~ 218 (251)
T 1i4n_A 169 ----VIRP-KIIGINT---RDLDTFEIKKNVLWELLPLVPDDTVVVAE-SG-I--------------K-D-----PRELK 218 (251)
T ss_dssp ----TCCC-SEEEEEC---BCTTTCCBCTTHHHHHGGGSCTTSEEEEE-SC-C--------------C-C-----GGGHH
T ss_pred ----cCCC-CEEEEeC---cccccCCCCHHHHHHHHHhCCCCCEEEEe-CC-C--------------C-C-----HHHHH
Confidence 3 54 4444432 135555678777777755 2 4555431 11 1 1 1 22234
Q ss_pred HHHHcCCCEEEEeeeCC
Q 022892 228 TAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 228 aAva~GA~G~~IEkH~t 244 (290)
.+..+ ++|+++=..++
T Consensus 219 ~~~~~-a~avLVG~aim 234 (251)
T 1i4n_A 219 DLRGK-VNAVLVGTSIM 234 (251)
T ss_dssp HHTTT-CSEEEECHHHH
T ss_pred HHHHh-CCEEEEcHHHc
Confidence 55677 99999987763
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=93.18 E-value=1.1 Score=42.42 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE-eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT-DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s-~~~d~~~~~~l~~-~~ 107 (290)
...+.++++++ +|+++|....-. +.. ...++.++.+++.. +++++. .+.+++.+..+.+ .+
T Consensus 100 ~~~e~~~~a~~----aGvdvI~id~a~-----------G~~-~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGa 163 (361)
T 3r2g_A 100 NELQRAEALRD----AGADFFCVDVAH-----------AHA-KYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGA 163 (361)
T ss_dssp HHHHHHHHHHH----TTCCEEEEECSC-----------CSS-HHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH----cCCCEEEEeCCC-----------CCc-HhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCC
Confidence 45566666665 699987653210 111 23345555555555 899999 8999999999888 69
Q ss_pred ceecccCC---c----------cCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 108 DIIQIPAF---L----------CRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 108 d~~kIgs~---~----------~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
|+++||.. . ..+...+.++++.-.||+..-|.. +..++..|+.
T Consensus 164 D~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~PVIAdGGI~-~~~di~kALa 219 (361)
T 3r2g_A 164 DIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRADRSIVADGGIK-TSGDIVKALA 219 (361)
T ss_dssp SEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSSEEEEESCCC-SHHHHHHHHH
T ss_pred CEEEEcCCCCcCccccccCCccHHHHHHHHHHHHhCCCEEEECCCC-CHHHHHHHHH
Confidence 99998533 1 124556666665544999999998 9999988865
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=3.5 Score=43.66 Aligned_cols=173 Identities=10% Similarity=0.066 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhc-CCcEEEee---cCcccHHHHhh-----hcceeccc-------------CCccCCHH----HHHHHH
Q 022892 74 EGLKILEKVKIAY-DIPIVTDV---HETVQCEEVGK-----VADIIQIP-------------AFLCRQTD----LLVAAA 127 (290)
Q Consensus 74 ~~l~~L~~~~~~~-Gi~~~s~~---~d~~~~~~l~~-----~~d~~kIg-------------s~~~~n~~----lL~~~a 127 (290)
...+.+.++.+.. +.+++..+ .+++....+.+ .+|++.|- +..+++.. +++++-
T Consensus 620 ~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~ 699 (1025)
T 1gte_A 620 YWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVR 699 (1025)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHH
Confidence 3444555655544 56777766 33444333322 46777662 22234544 444443
Q ss_pred -hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec---------------------CCC-CCCCC---CCCchh
Q 022892 128 -KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG---------------------TMF-GYNDL---IVDPRN 181 (290)
Q Consensus 128 -~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g---------------------s~~-~y~~~---~~dL~~ 181 (290)
.+++||++|-... .+++...++.+...|-.-|++.-.. +.. +|... .+.+..
T Consensus 700 ~~~~~Pv~vK~~~~--~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~ 777 (1025)
T 1gte_A 700 QAVQIPFFAKLTPN--VTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRA 777 (1025)
T ss_dssp HHCSSCEEEEECSC--SSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHH
T ss_pred HhhCCceEEEeCCC--hHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHH
Confidence 3589999998654 4456666666677787666663111 111 11111 011456
Q ss_pred HHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChH
Q 022892 182 LEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLR 259 (290)
Q Consensus 182 i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~ 259 (290)
+..+++ . ++||+.+..=. . ..-+..++++||++++|=+-+.- -.+.
T Consensus 778 v~~v~~~~~~ipvi~~GGI~--------------------s--~~da~~~l~~Ga~~v~vg~~~l~----------~~~~ 825 (1025)
T 1gte_A 778 VTTIARALPGFPILATGGID--------------------S--AESGLQFLHSGASVLQVCSAVQN----------QDFT 825 (1025)
T ss_dssp HHHHHHHSTTCCEEEESSCC--------------------S--HHHHHHHHHTTCSEEEESHHHHT----------SCTT
T ss_pred HHHHHHHcCCCCEEEecCcC--------------------C--HHHHHHHHHcCCCEEEEeecccc----------CCcc
Confidence 777777 6 89998743221 1 23455667899999999775421 1235
Q ss_pred HHHHHHHHHHHHHHHhCCccc
Q 022892 260 NLEELLEELVAIAKVSKGKQR 280 (290)
Q Consensus 260 ~l~~lv~~ir~~~~~lg~~~~ 280 (290)
.++++.+.++.+-...|-+.+
T Consensus 826 ~~~~~~~~l~~~l~~~G~~~i 846 (1025)
T 1gte_A 826 VIQDYCTGLKALLYLKSIEEL 846 (1025)
T ss_dssp HHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHHcCCCCH
Confidence 778888888877776676433
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.68 Score=43.73 Aligned_cols=130 Identities=15% Similarity=0.066 Sum_probs=77.0
Q ss_pred CHHHHHHHH-hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-eecCCCCCCCCCCCchhHHHHHh-cCCCEEEe
Q 022892 119 QTDLLVAAA-KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-ERGTMFGYNDLIVDPRNLEWMRE-ANCPVVAD 195 (290)
Q Consensus 119 n~~lL~~~a-~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~-~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D 195 (290)
+.+.++++. ..++||++| |.. +.++++.+. +.|-+-|.+- |.|..+ ..-..++..+..+++ .+.||+.|
T Consensus 213 ~~~~i~~i~~~~~~Pv~vk-gv~-t~e~a~~a~----~aGad~I~vs~~gg~~~--d~~~~~~~~l~~v~~~~~~pVia~ 284 (380)
T 1p4c_A 213 NWEALRWLRDLWPHKLLVK-GLL-SAEDADRCI----AEGADGVILSNHGGRQL--DCAISPMEVLAQSVAKTGKPVLID 284 (380)
T ss_dssp CHHHHHHHHHHCCSEEEEE-EEC-CHHHHHHHH----HTTCSEEEECCGGGTSC--TTCCCGGGTHHHHHHHHCSCEEEC
T ss_pred cHHHHHHHHHhcCCCEEEE-ecC-cHHHHHHHH----HcCCCEEEEcCCCCCcC--CCCcCHHHHHHHHHHHcCCeEEEE
Confidence 567778765 479999999 555 888877654 4677666653 323221 111236778888888 77899885
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 022892 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 196 ~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~l 275 (290)
..=. .+ .. +..+.++||++++|=+-+.... ...+... --+.++.+++.++..-...
T Consensus 285 GGI~----------------~~-----~d-v~kal~~GAdaV~iGr~~l~~~-~~~g~~~-v~~~~~~l~~el~~~m~~~ 340 (380)
T 1p4c_A 285 SGFR----------------RG-----SD-IVKALALGAEAVLLGRATLYGL-AARGETG-VDEVLTLLKADIDRTLAQI 340 (380)
T ss_dssp SSCC----------------SH-----HH-HHHHHHTTCSCEEESHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCC----------------CH-----HH-HHHHHHhCCcHhhehHHHHHHH-HhcCHHH-HHHHHHHHHHHHHHHHHHh
Confidence 3322 12 23 4456789999999987663110 0000000 0024566677777777777
Q ss_pred CCccc
Q 022892 276 KGKQR 280 (290)
Q Consensus 276 g~~~~ 280 (290)
|.+.+
T Consensus 341 G~~~i 345 (380)
T 1p4c_A 341 GCPDI 345 (380)
T ss_dssp TCCBG
T ss_pred CCCCH
Confidence 76443
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.27 Score=44.98 Aligned_cols=71 Identities=8% Similarity=0.038 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
+..+++++++|++-.. .+.+.+ ++ .+|++-|.+-+-.+.++..++.+.||+|++.+.++.|++|.+.-++.
T Consensus 49 ~~a~~~a~~~g~~~~~-----~d~~~ll~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~ 121 (390)
T 4h3v_A 49 EAVRAAAGKLGWSTTE-----TDWRTLLERDDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAA 121 (390)
T ss_dssp HHHHHHHHHHTCSEEE-----SCHHHHTTCTTCSEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccc-----CCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHH
Confidence 3456778899997432 234444 44 69999999999999999999999999999999999999998877444
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.22 Score=45.47 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHH-Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEE-VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~-l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
+..+++++++|++-.. .+.+. +++ .+|++-|.+-+-.+.++..++.+.||+|++.+.++.|++|.+..++..+
T Consensus 60 ~~a~~~a~~~g~~~~y-----~d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 134 (350)
T 4had_A 60 TRAREMADRFSVPHAF-----GSYEEMLASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARD 134 (350)
T ss_dssp HHHHHHHHHHTCSEEE-----SSHHHHHHCSSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCCeee-----CCHHHHhcCCCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHH
Confidence 3456778899997432 23444 444 6999999999999999999999999999999999999999888887665
Q ss_pred HcC
Q 022892 155 LAG 157 (290)
Q Consensus 155 ~~G 157 (290)
+.|
T Consensus 135 ~~~ 137 (350)
T 4had_A 135 RNK 137 (350)
T ss_dssp HHT
T ss_pred HcC
Confidence 544
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=92.71 E-value=1.2 Score=42.10 Aligned_cols=115 Identities=12% Similarity=0.159 Sum_probs=75.4
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE-ee
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT-DV 94 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s-~~ 94 (290)
..+++..+. +. ...+.++.+++ .|+++|-...-. +.. ...++.++++.+.. ++|++. .+
T Consensus 142 ~~~~~~i~~--~~-~~~~~a~~~~~----~G~d~i~i~~~~-----------g~~-~~~~e~i~~ir~~~~~~pviv~~v 202 (404)
T 1eep_A 142 LRVGAAVSI--DI-DTIERVEELVK----AHVDILVIDSAH-----------GHS-TRIIELIKKIKTKYPNLDLIAGNI 202 (404)
T ss_dssp BCCEEEECS--CT-THHHHHHHHHH----TTCSEEEECCSC-----------CSS-HHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred ceEEEEeCC--Ch-hHHHHHHHHHH----CCCCEEEEeCCC-----------CCh-HHHHHHHHHHHHHCCCCeEEEcCC
Confidence 345666554 22 24566666554 699988652100 111 34455666666667 899995 88
Q ss_pred cCcccHHHHhh-hcceecccC-------------CccCCHHHHHHHH----hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 95 HETVQCEEVGK-VADIIQIPA-------------FLCRQTDLLVAAA----KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 95 ~d~~~~~~l~~-~~d~~kIgs-------------~~~~n~~lL~~~a----~~~~PVilstG~~~tl~e~~~Ave 151 (290)
.+++.+..+.+ .+|++.+|. ....+...|..+. ..+.||+..-|.. +.+++..++.
T Consensus 203 ~~~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~-~~~d~~~ala 276 (404)
T 1eep_A 203 VTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIR-FSGDVVKAIA 276 (404)
T ss_dssp CSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCC-SHHHHHHHHH
T ss_pred CcHHHHHHHHhcCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCC-CHHHHHHHHH
Confidence 99888888877 699999932 1122444455554 3689999999999 9999998765
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=92.68 E-value=0.56 Score=43.07 Aligned_cols=90 Identities=13% Similarity=0.054 Sum_probs=57.6
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CCC-------------CCC---CCCCchhHHHHHh-c--C
Q 022892 130 GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT-MFG-------------YND---LIVDPRNLEWMRE-A--N 189 (290)
Q Consensus 130 ~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~~~-------------y~~---~~~dL~~i~~lk~-~--~ 189 (290)
++||++|-....+.+|+...++.+...|-+-|++ +.++ ... +.. ....+..+..+++ . +
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~v-sn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ 289 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIA-TNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGR 289 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEE-CCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTS
T ss_pred cCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEE-eCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCC
Confidence 7999999887778889988899888888654544 4332 110 000 0012355666777 5 7
Q ss_pred CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 190 CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 190 ~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
+||+.+..=. . ..-+..++++||++++|=+-
T Consensus 290 ipVi~~GGI~-----------------~-----~~da~~~l~~GAd~V~igr~ 320 (336)
T 1f76_A 290 LPIIGVGGID-----------------S-----VIAAREKIAAGASLVQIYSG 320 (336)
T ss_dssp SCEEEESSCC-----------------S-----HHHHHHHHHHTCSEEEESHH
T ss_pred CCEEEECCCC-----------------C-----HHHHHHHHHCCCCEEEeeHH
Confidence 9998742211 1 34566778899998877544
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=92.63 E-value=2.9 Score=36.05 Aligned_cols=185 Identities=11% Similarity=0.058 Sum_probs=94.2
Q ss_pred EEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH-hcCCcEEEeecC
Q 022892 18 FLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI-AYDIPIVTDVHE 96 (290)
Q Consensus 18 ~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~-~~Gi~~~s~~~d 96 (290)
.++.-+-+. +.....+..+.+ .+.|++++-+..-+ ....+.+ .++ .+..+.+++.+. .+++.+++ .|
T Consensus 8 ~i~psi~a~-d~~~l~~~i~~~----~~~Gad~i~l~i~D--g~fv~~~--~~~-~~~~~~lr~~~~~~~~v~lmv--~d 75 (228)
T 1h1y_A 8 KIAPSMLSS-DFANLAAEADRM----VRLGADWLHMDIMD--GHFVPNL--TIG-APVIQSLRKHTKAYLDCHLMV--TN 75 (228)
T ss_dssp EEEEBGGGS-CGGGHHHHHHHH----HHTTCSEEEEEEEB--SSSSSCB--CBC-HHHHHHHHTTCCSEEEEEEES--SC
T ss_pred eEEEEeeeC-CHHHHHHHHHHH----HHcCCCEEEEEEec--CCcCcch--hhC-HHHHHHHHhhcCCcEEEEEEe--cC
Confidence 344444443 333333444443 45799886443211 1111111 122 244555555542 33444444 33
Q ss_pred c-ccHHHHhh-hcceecccCCccCC--HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc--CCCcEEEEeecCCC
Q 022892 97 T-VQCEEVGK-VADIIQIPAFLCRQ--TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA--GNPNVMVCERGTMF 170 (290)
Q Consensus 97 ~-~~~~~l~~-~~d~~kIgs~~~~n--~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~--Gn~~i~L~~~gs~~ 170 (290)
+ ..++.+.+ .+|.+++....... ...++++-+.|+.++++..+. |..|...+ +... +- +.+++-... .
T Consensus 76 ~~~~i~~~~~agad~v~vH~~~~~~~~~~~~~~i~~~g~~igv~~~p~-t~~e~~~~---~~~~~~~~-d~vl~~sv~-p 149 (228)
T 1h1y_A 76 PSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPG-TPVEEVFP---LVEAENPV-ELVLVMTVE-P 149 (228)
T ss_dssp GGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTT-SCGGGGHH---HHHSSSCC-SEEEEESSC-T
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccHHHHHHHHHHHcCCCEEEEEeCC-CCHHHHHH---HHhcCCCC-CEEEEEeec-C
Confidence 3 23555555 69999887766532 456777777899999999776 55444332 2332 33 445442211 1
Q ss_pred CCCCCCC---CchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 171 GYNDLIV---DPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 171 ~y~~~~~---dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
++..... -+..+..+++ . ++||.+|.-=+ +.-+..++..||||+++=+-+
T Consensus 150 g~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~-----------------------~~ni~~~~~aGaD~vvvGsai 204 (228)
T 1h1y_A 150 GFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLG-----------------------PSTIDVAASAGANCIVAGSSI 204 (228)
T ss_dssp TCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCS-----------------------TTTHHHHHHHTCCEEEESHHH
T ss_pred CCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcC-----------------------HHHHHHHHHcCCCEEEECHHH
Confidence 1111112 2445666666 5 78988752211 011223455699999988776
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=1.1 Score=41.14 Aligned_cols=136 Identities=18% Similarity=0.065 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCeEEEe-CCCCCCHHHHHHHHHHHHHcCCCcEEEE-eecC--------CC------CC--CCCCCCchh
Q 022892 120 TDLLVAAAKTGKIINIK-KGQFCASSVMVNSAEKVRLAGNPNVMVC-ERGT--------MF------GY--NDLIVDPRN 181 (290)
Q Consensus 120 ~~lL~~~a~~~~PVils-tG~~~tl~e~~~Ave~i~~~Gn~~i~L~-~~gs--------~~------~y--~~~~~dL~~ 181 (290)
.+.++++-+.++||++| .|...++++... +...|-+-|++- |-|+ .. +| ..-...+..
T Consensus 171 ~~~i~~vr~~~~Pv~vK~v~~g~~~e~a~~----~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 246 (332)
T 1vcf_A 171 VERLAELLPLPFPVMVKEVGHGLSREAALA----LRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARA 246 (332)
T ss_dssp HHHHHHHCSCSSCEEEECSSSCCCHHHHHH----HTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHH
T ss_pred HHHHHHHHcCCCCEEEEecCCCCCHHHHHH----HHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHH
Confidence 45666665578999999 666568887553 445676544442 2222 10 00 001123455
Q ss_pred HHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChH
Q 022892 182 LEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLR 259 (290)
Q Consensus 182 i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~ 259 (290)
+..+++ . ++||+.+..-.. ..-+..++++||++++|=+-+--.. .++.. --.+
T Consensus 247 l~~v~~~~~~ipvia~GGI~~----------------------~~d~~kal~~GAd~V~igr~~l~~~--~~G~~-gv~~ 301 (332)
T 1vcf_A 247 ILEVREVLPHLPLVASGGVYT----------------------GTDGAKALALGADLLAVARPLLRPA--LEGAE-RVAA 301 (332)
T ss_dssp HHHHHHHCSSSCEEEESSCCS----------------------HHHHHHHHHHTCSEEEECGGGHHHH--TTCHH-HHHH
T ss_pred HHHHHHhcCCCeEEEECCCCC----------------------HHHHHHHHHhCCChHhhhHHHHHHH--hccHH-HHHH
Confidence 666766 5 799988533221 2334467889999999987553110 11100 0013
Q ss_pred HHHHHHHHHHHHHHHhCCccccccC
Q 022892 260 NLEELLEELVAIAKVSKGKQRMNID 284 (290)
Q Consensus 260 ~l~~lv~~ir~~~~~lg~~~~~~~~ 284 (290)
-++.+.+.++..-...|.+++-++.
T Consensus 302 ~~~~l~~el~~~m~~~G~~~i~el~ 326 (332)
T 1vcf_A 302 WIGDYLEELRTALFAIGARNPKEAR 326 (332)
T ss_dssp HHHHHHHHHHHHHHHHTCSSGGGGT
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHh
Confidence 4667778888887788877665543
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=92.33 E-value=7.2 Score=36.39 Aligned_cols=131 Identities=18% Similarity=0.048 Sum_probs=75.1
Q ss_pred CHHHHHHHH-hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEE
Q 022892 119 QTDLLVAAA-KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVA 194 (290)
Q Consensus 119 n~~lL~~~a-~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~ 194 (290)
+.+.++++. .+++||++|--+ +.+++..+. ..|-+-|.+--.|+...+ ....++..+..+++ . ++||+.
T Consensus 213 ~~~~i~~l~~~~~~pv~vK~~~--~~e~a~~a~----~~Gad~I~vs~~ggr~~~-~~~~~~~~l~~v~~~~~~~ipvia 285 (370)
T 1gox_A 213 SWKDVAWLQTITSLPILVKGVI--TAEDARLAV----QHGAAGIIVSNHGARQLD-YVPATIMALEEVVKAAQGRIPVFL 285 (370)
T ss_dssp CHHHHHHHHHHCCSCEEEECCC--SHHHHHHHH----HTTCSEEEECCGGGTSST-TCCCHHHHHHHHHHHTTTSSCEEE
T ss_pred hHHHHHHHHHHhCCCEEEEecC--CHHHHHHHH----HcCCCEEEECCCCCccCC-CcccHHHHHHHHHHHhCCCCEEEE
Confidence 445566654 479999997653 677776654 467665555332222111 11246677887877 5 799988
Q ss_pred eCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 195 D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
|..-.. ..-+..+.++||++++|=+-+-..-+ ..+.. --.+-++.+++.++..-..
T Consensus 286 ~GGI~~----------------------~~D~~k~l~~GAdaV~iGr~~l~~~~-~~G~~-gv~~~~~~l~~el~~~m~~ 341 (370)
T 1gox_A 286 DGGVRR----------------------GTDVFKALALGAAGVFIGRPVVFSLA-AEGEA-GVKKVLQMMRDEFELTMAL 341 (370)
T ss_dssp ESSCCS----------------------HHHHHHHHHHTCSEEEECHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCC----------------------HHHHHHHHHcCCCEEeecHHHHHHHh-hccHH-HHHHHHHHHHHHHHHHHHH
Confidence 644331 22344567899999999875521100 01100 0003466677777777777
Q ss_pred hCCccc
Q 022892 275 SKGKQR 280 (290)
Q Consensus 275 lg~~~~ 280 (290)
.|.+.+
T Consensus 342 ~G~~~i 347 (370)
T 1gox_A 342 SGCRSL 347 (370)
T ss_dssp HTCSBT
T ss_pred hCCCCH
Confidence 776443
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=1.2 Score=43.61 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=82.6
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s 92 (290)
..++.+.|+++.- . ..++.++.|++ +|+++|...+-. +. ....++.+++++++++ ++++.
T Consensus 242 ~~rl~V~aavg~~--~-d~~era~aLve----aGvd~I~Id~a~-----------g~-~~~v~~~i~~i~~~~~~~~vi~ 302 (511)
T 3usb_A 242 QGRLLVGAAVGVT--A-DAMTRIDALVK----ASVDAIVLDTAH-----------GH-SQGVIDKVKEVRAKYPSLNIIA 302 (511)
T ss_dssp TSCBCCEEEECSS--T-THHHHHHHHHH----TTCSEEEEECSC-----------TT-SHHHHHHHHHHHHHCTTSEEEE
T ss_pred ccceeeeeeeeec--c-chHHHHHHHHh----hccceEEecccc-----------cc-hhhhhhHHHHHHHhCCCceEEe
Confidence 4567777777752 2 34777778877 599998775322 11 1345667778888875 77776
Q ss_pred -eecCcccHHHHhh-hcceecccCCc-------------cCCHHHHHHH----HhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 93 -DVHETVQCEEVGK-VADIIQIPAFL-------------CRQTDLLVAA----AKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 93 -~~~d~~~~~~l~~-~~d~~kIgs~~-------------~~n~~lL~~~----a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
++.+.+.+..+.+ .+|++++|..- ..+...+..+ ...+.|||.+=|.. +..++..|+.
T Consensus 303 g~v~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~-~~~di~kala 379 (511)
T 3usb_A 303 GNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIK-YSGDMVKALA 379 (511)
T ss_dssp EEECSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCC-SHHHHHHHHH
T ss_pred eeeccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCC-CHHHHHHHHH
Confidence 8889988888887 79999984321 2345555443 33579999999999 9999998854
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=92.31 E-value=6.3 Score=35.70 Aligned_cols=175 Identities=9% Similarity=0.061 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEEe-ecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVTD-VHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s~-~~d~~~~~~l~~ 105 (290)
+.+.-++++++|.++ |++.|=..+ |..+ +..++.+++.++. .+..+.+= +-....++...+
T Consensus 25 ~~~~K~~i~~~L~~~----Gv~~IE~g~----p~~~---------~~d~e~v~~i~~~~~~~~i~~l~~~~~~di~~a~~ 87 (293)
T 3ewb_X 25 DVKEKIQIALQLEKL----GIDVIEAGF----PISS---------PGDFECVKAIAKAIKHCSVTGLARCVEGDIDRAEE 87 (293)
T ss_dssp CHHHHHHHHHHHHHH----TCSEEEEEC----GGGC---------HHHHHHHHHHHHHCCSSEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc----CCCEEEEeC----CCCC---------ccHHHHHHHHHHhcCCCEEEEEecCCHHHHHHHHH
Confidence 678899999999885 999875442 2222 2334444444433 23333321 122233443322
Q ss_pred -----hcceec--ccCCccCC---------------HHHHHHHHhcCCeEEEeCCCC--CCHHHHHHHHHHHHHcCCCcE
Q 022892 106 -----VADIIQ--IPAFLCRQ---------------TDLLVAAAKTGKIINIKKGQF--CASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 106 -----~~d~~k--Igs~~~~n---------------~~lL~~~a~~~~PVilstG~~--~tl~e~~~Ave~i~~~Gn~~i 161 (290)
.++.+- +++.+..+ .+.++++-+.+..|.++-..+ .+++.+...++.+...|-..|
T Consensus 88 ~~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i 167 (293)
T 3ewb_X 88 ALKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVI 167 (293)
T ss_dssp HHTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEE
T ss_pred HHhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 223222 23333221 133444556688887764321 388889999999999999888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cC----CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCE
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-AN----CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 236 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~----~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G 236 (290)
.|+..... ..|.. +- .-+..+++ +. +|+++ +.|-. +.+...-+.+|+.+||+
T Consensus 168 ~l~DT~G~-~~P~~-v~-~lv~~l~~~~~~~~~~~l~~-H~Hnd------------------~Gla~AN~laA~~aGa~- 224 (293)
T 3ewb_X 168 NIPDTVGY-TNPTE-FG-QLFQDLRREIKQFDDIIFAS-HCHDD------------------LGMATANALAAIENGAR- 224 (293)
T ss_dssp EEECSSSC-CCHHH-HH-HHHHHHHHHCTTGGGSEEEE-ECBCT------------------TSCHHHHHHHHHHTTCC-
T ss_pred EecCCCCC-CCHHH-HH-HHHHHHHHhcCCccCceEEE-EeCCC------------------cChHHHHHHHHHHhCCC-
Confidence 88776542 12221 11 34556666 53 67988 77763 22335567789999998
Q ss_pred EEEeeeC
Q 022892 237 VFMEVHD 243 (290)
Q Consensus 237 ~~IEkH~ 243 (290)
.++.-.
T Consensus 225 -~vd~sv 230 (293)
T 3ewb_X 225 -RVEGTI 230 (293)
T ss_dssp -EEEEBG
T ss_pred -EEEeec
Confidence 777655
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=92.28 E-value=2.6 Score=40.26 Aligned_cols=129 Identities=13% Similarity=0.036 Sum_probs=73.3
Q ss_pred CcEEEeecCcccHHHHhh-hcceecccCCccCC---HHHHHHHHhc-CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 022892 88 IPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQ---TDLLVAAAKT-GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVM 162 (290)
Q Consensus 88 i~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n---~~lL~~~a~~-~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~ 162 (290)
+....-+.+.+.++.+.+ .+|++-|.+..-.. .++++++.+. +.||+..+- .|.++.+.+. ..|-+-|.
T Consensus 137 v~~~v~~~~~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V--~t~e~A~~a~----~aGAD~I~ 210 (400)
T 3ffs_A 137 VGAAIGVNEIERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNV--VTEEATKELI----ENGADGIK 210 (400)
T ss_dssp CEEEECCC-CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEE--CSHHHHHHHH----HTTCSEEE
T ss_pred EEeecCCCHHHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeec--CCHHHHHHHH----HcCCCEEE
Confidence 444555556667777766 69999874433222 4666776554 899998543 3688777654 45765444
Q ss_pred EEe------ecCCCCCCCCCCCchhHHHHHh----cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc
Q 022892 163 VCE------RGTMFGYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV 232 (290)
Q Consensus 163 L~~------~gs~~~y~~~~~dL~~i~~lk~----~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~ 232 (290)
+ . |++........-++..+..+.+ .++||+.|..=. .+ .. ...|.++
T Consensus 211 v-G~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~----------------~~-----~d-i~kalal 267 (400)
T 3ffs_A 211 V-GIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIR----------------YS-----GD-IGKALAV 267 (400)
T ss_dssp E-CC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCC----------------SH-----HH-HHHHHTT
T ss_pred E-eCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCC----------------CH-----HH-HHHHHHc
Confidence 4 2 2221000001124556666654 478998753211 01 23 3467889
Q ss_pred CCCEEEEeeeCCC
Q 022892 233 GVDGVFMEVHDDP 245 (290)
Q Consensus 233 GA~G~~IEkH~t~ 245 (290)
||+|++|=+-|.-
T Consensus 268 GAd~V~vGt~f~~ 280 (400)
T 3ffs_A 268 GASSVMIGSILAG 280 (400)
T ss_dssp TCSEEEECGGGTT
T ss_pred CCCEEEEChHHhc
Confidence 9999998876654
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=92.27 E-value=1.9 Score=39.35 Aligned_cols=109 Identities=12% Similarity=0.079 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..|++..++-+..++-++||.-++..+++ .++.+.+++..+.+. .|.| .++.- |++|+...++.|.+
T Consensus 5 ~~lr~l~~~~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~--------~G~p---D~~~v-t~~em~~~~~~I~~ 72 (290)
T 2hjp_A 5 QALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSAS--------YAVP---DANIL-SMSTHLEMMRAIAS 72 (290)
T ss_dssp HHHHHHHHHCCCEEEEECSSHHHHHHHHHHTCSEEEECHHHHHHH--------TTSC---TTTCS-CHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHh--------CCCC---CCCCC-CHHHHHHHHHHHHh
Confidence 34666667777888889999999999888 699999987654432 3555 34555 89999888877652
Q ss_pred cCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 156 AGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 156 ~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
. .++||++|-+.+- |..+.+...++.-+..||.
T Consensus 73 ~-------------------------------~~~PviaD~d~Gy----------------g~~~~~~~~v~~l~~aGa~ 105 (290)
T 2hjp_A 73 T-------------------------------VSIPLIADIDTGF----------------GNAVNVHYVVPQYEAAGAS 105 (290)
T ss_dssp T-------------------------------CSSCEEEECTTTT----------------SSHHHHHHHHHHHHHHTCS
T ss_pred c-------------------------------CCCCEEEECCCCC----------------CCHHHHHHHHHHHHHhCCe
Confidence 1 1468888888763 3233334445555678999
Q ss_pred EEEEeeeCC
Q 022892 236 GVFMEVHDD 244 (290)
Q Consensus 236 G~~IEkH~t 244 (290)
|+-||--..
T Consensus 106 gv~iED~~~ 114 (290)
T 2hjp_A 106 AIVMEDKTF 114 (290)
T ss_dssp EEEEECBCS
T ss_pred EEEEcCCCC
Confidence 999997643
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.94 Score=38.99 Aligned_cols=178 Identities=12% Similarity=0.056 Sum_probs=96.6
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEEe--
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVTD-- 93 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s~-- 93 (290)
.+++|-=.. |.+..++.++++. .|++++... |.. + +..|+..++++.+.+ +.+++-+
T Consensus 8 ~lilalD~~--~~~~~~~~~~~~~-----~~vd~ie~g-~~~--------~----~~~G~~~i~~lr~~~~~~~i~ld~~ 67 (218)
T 3jr2_A 8 MIQIALDQT--NLTDAVAVASNVA-----SYVDVIEVG-TIL--------A----FAEGMKAVSTLRHNHPNHILVCDMK 67 (218)
T ss_dssp EEEEEECCS--SHHHHHHHHHHHG-----GGCSEEEEC-HHH--------H----HHHTTHHHHHHHHHCTTSEEEEEEE
T ss_pred CeEEEeCCC--CHHHHHHHHHHhc-----CCceEEEeC-cHH--------H----HhcCHHHHHHHHHhCCCCcEEEEEe
Confidence 345543333 6777777777742 378887654 221 0 235566666666653 6566543
Q ss_pred ecCc--ccHHHHhh-hcceecccCCccCC--HHHHHHHHhcCCeEEE-eCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 022892 94 VHET--VQCEEVGK-VADIIQIPAFLCRQ--TDLLVAAAKTGKIINI-KKGQFCASSVMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 94 ~~d~--~~~~~l~~-~~d~~kIgs~~~~n--~~lL~~~a~~~~PVil-stG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
.+|. ..++.+.+ .+|++-+....... ..+++.+.+.|+++++ --|.. |.+++..+.+ .|-..+.+ +.+
T Consensus 68 l~d~p~~~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~~-T~~~~~~~~~----~g~d~v~~-~~~ 141 (218)
T 3jr2_A 68 TTDGGAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNW-TMQDAKAWVD----LGITQAIY-HRS 141 (218)
T ss_dssp ECSCHHHHHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSSC-CHHHHHHHHH----TTCCEEEE-ECC
T ss_pred ecccHHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceeeeecC-CHHHHHHHHH----cCccceee-eec
Confidence 2332 12334444 58888887665422 2455666677887765 44555 7777776543 36655544 333
Q ss_pred CCCCCCCCCCCchhHHHHHh---cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 168 TMFGYNDLIVDPRNLEWMRE---ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 168 s~~~y~~~~~dL~~i~~lk~---~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+..+......-...+..+|+ .++||.++. |.+ +.-+..++++||+|+++=+-+
T Consensus 142 ~~~~~~g~~~~~~~l~~i~~~~~~~~pi~v~G--------------------GI~---~~~~~~~~~aGAd~vvvGsaI 197 (218)
T 3jr2_A 142 RDAELAGIGWTTDDLDKMRQLSALGIELSITG--------------------GIV---PEDIYLFEGIKTKTFIAGRAL 197 (218)
T ss_dssp HHHHHHTCCSCHHHHHHHHHHHHTTCEEEEES--------------------SCC---GGGGGGGTTSCEEEEEESGGG
T ss_pred cccccCCCcCCHHHHHHHHHHhCCCCCEEEEC--------------------CCC---HHHHHHHHHcCCCEEEEchhh
Confidence 21111011122334555555 378887752 211 112335688899999987765
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=0.98 Score=42.51 Aligned_cols=130 Identities=17% Similarity=0.107 Sum_probs=73.7
Q ss_pred HHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEe
Q 022892 120 TDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVAD 195 (290)
Q Consensus 120 ~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D 195 (290)
.+.++++-+ +++||++|- .. +.++.+.+. ..|-+-|++--.|....+ ....++..++.+++ . ++||+.|
T Consensus 218 ~~~i~~lr~~~~~PvivK~-v~-~~e~a~~a~----~~Gad~I~vs~~ggr~~~-~g~~~~~~l~~v~~~v~~~ipVia~ 290 (368)
T 2nli_A 218 PRDIEEIAGHSGLPVFVKG-IQ-HPEDADMAI----KRGASGIWVSNHGARQLY-EAPGSFDTLPAIAERVNKRVPIVFD 290 (368)
T ss_dssp HHHHHHHHHHSSSCEEEEE-EC-SHHHHHHHH----HTTCSEEEECCGGGTSCS-SCCCHHHHHHHHHHHHTTSSCEEEC
T ss_pred HHHHHHHHHHcCCCEEEEc-CC-CHHHHHHHH----HcCCCEEEEcCCCcCCCC-CCCChHHHHHHHHHHhCCCCeEEEE
Confidence 455677654 789999994 33 777766554 467655555433432111 11235677777876 4 6999886
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 022892 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 196 ~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~l 275 (290)
..=.. | .. +..++++||++++|=+-+--..+ ..+... -.+.++.+.++++..-...
T Consensus 291 GGI~~----------------g-----~D-~~kalalGAd~V~iGr~~l~~~~-~~G~~g-v~~~l~~l~~el~~~m~~~ 346 (368)
T 2nli_A 291 SGVRR----------------G-----EH-VAKALASGADVVALGRPVLFGLA-LGGWQG-AYSVLDYFQKDLTRVMQLT 346 (368)
T ss_dssp SSCCS----------------H-----HH-HHHHHHTTCSEEEECHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC----------------H-----HH-HHHHHHcCCCEEEECHHHHHHHH-hcChHH-HHHHHHHHHHHHHHHHHHh
Confidence 44221 2 23 44568899999999874411000 001000 0124566677777777777
Q ss_pred CCccc
Q 022892 276 KGKQR 280 (290)
Q Consensus 276 g~~~~ 280 (290)
|.+.+
T Consensus 347 G~~~i 351 (368)
T 2nli_A 347 GSQNV 351 (368)
T ss_dssp TCSSH
T ss_pred CCcCH
Confidence 76443
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=92.06 E-value=1.7 Score=42.01 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=77.7
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEE-Ee
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIV-TD 93 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~-s~ 93 (290)
++.+.++.+. . ....+.++++++ +|+++|....- .|.. ...++.++++++.. ++|++ -.
T Consensus 225 ~l~vga~ig~--~-~~~~~~a~~l~~----aGvd~v~i~~~-----------~G~~-~~~~e~i~~i~~~~p~~pvi~g~ 285 (494)
T 1vrd_A 225 RLLVGAAVGT--S-PETMERVEKLVK----AGVDVIVIDTA-----------HGHS-RRVIETLEMIKADYPDLPVVAGN 285 (494)
T ss_dssp CBCCEEEECS--S-TTHHHHHHHHHH----TTCSEEEECCS-----------CCSS-HHHHHHHHHHHHHCTTSCEEEEE
T ss_pred hhccccccCc--C-HhHHHHHHHHHH----hCCCEEEEEec-----------CCch-HHHHHHHHHHHHHCCCceEEeCC
Confidence 4555555553 1 234666777766 69998876321 1111 35677778887777 78875 47
Q ss_pred ecCcccHHHHhh-hcceecccCCc-------------cCCHHHHHHHHh----cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 94 VHETVQCEEVGK-VADIIQIPAFL-------------CRQTDLLVAAAK----TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 94 ~~d~~~~~~l~~-~~d~~kIgs~~-------------~~n~~lL~~~a~----~~~PVilstG~~~tl~e~~~Ave 151 (290)
+.+.+.+..+.+ .+|++.++..- ..+...+..+++ .+.||+.+-|.. +..++..|+.
T Consensus 286 ~~t~e~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~-~~~di~kala 360 (494)
T 1vrd_A 286 VATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIR-YSGDIVKALA 360 (494)
T ss_dssp ECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCC-SHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcC-CHHHHHHHHH
Confidence 888888888877 79999995421 223444444433 489999999999 9999998764
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.58 Score=41.97 Aligned_cols=74 Identities=16% Similarity=0.043 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
..+++++++|++. ..+.+.+.+.+|++-|....-...++...+.+.||+|++.+.++.+++|....++..++.|
T Consensus 44 ~~~~~a~~~~~~~------~~~~~~ll~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g 117 (308)
T 3uuw_A 44 KREKICSDYRIMP------FDSIESLAKKCDCIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKN 117 (308)
T ss_dssp HHHHHHHHHTCCB------CSCHHHHHTTCSEEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCC------cCCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 3555677889875 2344555447999999999999999999999999999999999999999988887665554
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=91.91 E-value=7.2 Score=37.46 Aligned_cols=174 Identities=12% Similarity=0.087 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc--EEE-eecCcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP--IVT-DVHETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~--~~s-~~~d~~~~~~l~ 104 (290)
+.+.-+++|++|.++ |++.|=-.+ |..+|. .+...++++ +.++. +++ -..+...++...
T Consensus 59 s~eeKl~Ia~~L~~~----Gv~~IEvG~----P~asp~---------d~~~~~~i~-~~~~~~~v~~~~r~~~~di~~A~ 120 (423)
T 3ivs_A 59 DTEKKIQIAKALDNF----GVDYIELTS----PVASEQ---------SRQDCEAIC-KLGLKCKILTHIRCHMDDARVAV 120 (423)
T ss_dssp CHHHHHHHHHHHHHH----TCSEEEECC----TTSCHH---------HHHHHHHHH-TSCCSSEEEEEEESCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc----CCCEEEEee----cccCHH---------HHHHHHHHH-hcCCCCEEEEeeccChhhHHHHH
Confidence 678899999999985 999876542 333322 122222222 23332 221 123444455554
Q ss_pred h-hcceeccc--CCccC-----C------H----HHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEE
Q 022892 105 K-VADIIQIP--AFLCR-----Q------T----DLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVC 164 (290)
Q Consensus 105 ~-~~d~~kIg--s~~~~-----n------~----~lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~ 164 (290)
+ .++.+-|- +.+.. | . +.++++-+.|..|.++ .+...+++.+...++.+...|...|.|+
T Consensus 121 ~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~~Ga~~i~l~ 200 (423)
T 3ivs_A 121 ETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVNRVGIA 200 (423)
T ss_dssp HTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHHhCCCccccC
Confidence 4 45544432 22210 0 1 2345556678888875 3333478888888888888998888888
Q ss_pred eecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 165 ERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 165 ~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..... ..|.. + ..-+..+++ .++++.+ +.|-. +.+...-+.+|+.+||+ .++.-+
T Consensus 201 DTvG~-~~P~~-v-~~lv~~l~~~~~~~i~~-H~Hnd------------------~GlAvAN~laAv~aGa~--~vd~ti 256 (423)
T 3ivs_A 201 DTVGC-ATPRQ-V-YDLIRTLRGVVSCDIEC-HFHND------------------TGMAIANAYCALEAGAT--HIDTSI 256 (423)
T ss_dssp ETTSC-CCHHH-H-HHHHHHHHHHCSSEEEE-EEBCT------------------TSCHHHHHHHHHHTTCC--EEEEBG
T ss_pred CccCc-CCHHH-H-HHHHHHHHhhcCCeEEE-EECCC------------------CchHHHHHHHHHHhCCC--EEEEec
Confidence 76652 12221 1 134556666 7888988 67753 22335567789999998 777765
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=91.81 E-value=3.2 Score=47.39 Aligned_cols=193 Identities=12% Similarity=-0.002 Sum_probs=107.8
Q ss_pred hhhHHhhhcCCCCeEEEEccC-CccCHHHHHHHHHHHHHHHHHcCCCEEe-ccccccCCCCCcccCCCCChhHHHHHHHH
Q 022892 4 STALFNQLKAAEPFFLLAGPN-VIESEEHIMRMAKHIKSISTKVGLPLVF-KSSFDKANRTSSKSFRGPGMVEGLKILEK 81 (290)
Q Consensus 4 ~~~~~~~i~~~~~~~iIAgpc-sien~~~~le~Ak~L~~~a~~~G~~~V~-~~~~~k~~rts~~~~~g~~~~~~l~~L~~ 81 (290)
+|.+-+.++ ..++|.|+.. .+-+. + |+.+..++|.-.+. -..+. ..+..-+++++
T Consensus 573 ~t~~t~~lg--~~PIi~a~M~~~vs~~----~----LaaAva~aGglG~i~g~g~~-------------~~e~l~~~i~~ 629 (2060)
T 2uva_G 573 DTKMSRLLG--VPPVMVAGMTPTTVPW----D----FVAATMNAGYHIELAGGGYY-------------NAQKMSDAISK 629 (2060)
T ss_dssp ECHHHHHHT--SCSEEECCCTTTTCSH----H----HHHHHHHTTCEECEEGGGCC-------------SHHHHHHHHHH
T ss_pred chhhhhccc--cceEEecCCCCccccH----H----HHHHHHHCCCEEEECcCCCC-------------CHHHHHHHHHH
Confidence 456666666 4557777766 22122 2 33444456865544 22111 11222334555
Q ss_pred HHHhc--CCcEEEeecC--cc-------cHHHHhh-hcce--ecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHH
Q 022892 82 VKIAY--DIPIVTDVHE--TV-------QCEEVGK-VADI--IQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMV 147 (290)
Q Consensus 82 ~~~~~--Gi~~~s~~~d--~~-------~~~~l~~-~~d~--~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~ 147 (290)
+.+.. |-+|...++- +. .++.+.+ .+++ +.++++.-..-++.+.+...+.+++...+ +..+..
T Consensus 630 vk~~~~~~~p~gvN~~~~~p~~~~~~~~~~~~~~~~gv~i~gv~~~~G~p~~e~~~~~l~~~gi~~i~~v~---~~~~a~ 706 (2060)
T 2uva_G 630 IEKAIPPGRGITVNLIYVNPRAMGWQIPLLGRLRADGVPIEGLTIGAGVPSIEVANEYIQTLGIRHISFKP---GSVDAI 706 (2060)
T ss_dssp HGGGSCTTCCEEEEEETTCTTHHHHHHHHHHHHHTTTCCEEEEEEESSCCCHHHHHHHHHHSCCSEEEECC---CSHHHH
T ss_pred HHhhcccCCCeEecccccCcccchhHHHHHHHHHHcCCCcceEeecCCCCCHHHHHHHHHHcCCeEEEecC---CHHHHH
Confidence 55544 4566655443 33 2344444 5777 77777765544566777778999885544 457777
Q ss_pred HHHHHHHHcCCCcEEEEeecCC--CCC-CCCCC---CchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcc
Q 022892 148 NSAEKVRLAGNPNVMVCERGTM--FGY-NDLIV---DPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 220 (290)
Q Consensus 148 ~Ave~i~~~Gn~~i~L~~~gs~--~~y-~~~~~---dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~ 220 (290)
.++..+...|-+-+++++.... -+. ..+++ -+..++.+++ .++||+.+..=. .
T Consensus 707 ~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGGI~----------------~---- 766 (2060)
T 2uva_G 707 QQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGFG----------------G---- 766 (2060)
T ss_dssp HHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSCC----------------S----
T ss_pred HHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcCCCEEEeCCCC----------------C----
Confidence 7777777888766665554331 111 11211 1345566676 688998842222 1
Q ss_pred cHHHHHHHHH-----------HcCCCEEEEeeeCC
Q 022892 221 LIPCIARTAI-----------AVGVDGVFMEVHDD 244 (290)
Q Consensus 221 ~~~~~a~aAv-----------a~GA~G~~IEkH~t 244 (290)
..-..++. ++||+|+++=+-|-
T Consensus 767 --g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~ 799 (2060)
T 2uva_G 767 --SEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMM 799 (2060)
T ss_dssp --HHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGG
T ss_pred --HHHHHHHhcCcchhhcCCCCCCCCEEEEchhhh
Confidence 23344678 89999999877653
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.49 Score=44.35 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHH-Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEE-VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~-l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
...+++++++|++-.. .+.+. +++ .+|++-|.+-.-.+.++..++.+.||+|++.+.++.|++|....++..+
T Consensus 70 ~~a~~~a~~~~~~~~y-----~d~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~ 144 (412)
T 4gqa_A 70 AMAERHAAKLGAEKAY-----GDWRELVNDPQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAAR 144 (412)
T ss_dssp HHHHHHHHHHTCSEEE-----SSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEE-----CCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHH
Confidence 3466778899997332 23344 444 6999999999999999999999999999999999999999999988776
Q ss_pred HcC
Q 022892 155 LAG 157 (290)
Q Consensus 155 ~~G 157 (290)
+.|
T Consensus 145 ~~g 147 (412)
T 4gqa_A 145 RAG 147 (412)
T ss_dssp HHT
T ss_pred HhC
Confidence 654
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=91.79 E-value=2.7 Score=38.05 Aligned_cols=135 Identities=10% Similarity=0.056 Sum_probs=83.3
Q ss_pred hhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHH-HHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHH
Q 022892 5 TALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKS-ISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVK 83 (290)
Q Consensus 5 ~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~-~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~ 83 (290)
..++..|.. ..+.++=--..+.|-+....+|+--.+ + .|-+.||..-... +|+.. .. ....-...+..
T Consensus 63 ~~~~~~i~~-~~~~~lpNTag~~ta~eAv~~a~lare~~---~~~~~iKlEv~~d-~~~ll-----pD-~~~tv~aa~~L 131 (265)
T 1wv2_A 63 PNLLDVIPP-DRYTILPNTAGCYDAVEAVRTCRLARELL---DGHNLVKLEVLAD-QKTLF-----PN-VVETLKAAEQL 131 (265)
T ss_dssp -------CT-TTSEEEEECTTCCSHHHHHHHHHHHHTTT---TSCCEEEECCBSC-TTTCC-----BC-HHHHHHHHHHH
T ss_pred chHHhhhhh-cCCEECCcCCCCCCHHHHHHHHHHHHHHc---CCCCeEEEEeecC-ccccC-----cC-HHHHHHHHHHH
Confidence 356666642 234444322334577777777766555 3 5688998876642 33221 11 12222233333
Q ss_pred HhcCCcEE-EeecCcccHHHHhh-hccee-----cccCC-ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 84 IAYDIPIV-TDVHETVQCEEVGK-VADII-----QIPAF-LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 84 ~~~Gi~~~-s~~~d~~~~~~l~~-~~d~~-----kIgs~-~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
.+-|+.++ -..-|+.....+++ .++++ .||++ -+.|.++|+.+.+ .+.|||..=|.. |++++..|.+
T Consensus 132 ~~~Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~-TPsDAa~Ame 207 (265)
T 1wv2_A 132 VKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVG-TASDAAIAME 207 (265)
T ss_dssp HTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCC-SHHHHHHHHH
T ss_pred HHCCCEEEEEeCCCHHHHHHHHHhCCCEEEeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCC-CHHHHHHHHH
Confidence 45599999 48888888888887 46655 25665 4578999999866 588999999998 9999999877
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=91.62 E-value=6.6 Score=34.45 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCccc---------H
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQ---------C 100 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~---------~ 100 (290)
....++++.+.......+++.++.. .+..|..+.+..++++..-=.|+.+ +
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~L~~v~~~~~i~v~aQdv~~~~~Ga~TGeis~ 81 (225)
T 1hg3_A 22 KRALEIAKAAEKVYKETGVTIVVAP--------------------QLVDLRMIAESVEIPVFAQHIDPIKPGSHTGHVLP 81 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEC--------------------CHHHHHHHHHSCSSCBEESCCCSCCSBSCTTCCCH
T ss_pred HHHHHHHHHHHhhccccCCcEEEeC--------------------CHHHHHHHHHhcCCceeeeeCCcccCCCccCcccH
Confidence 6678888888664333234433332 2445555566669999997788888 9
Q ss_pred HHHhh-hcceecccCCc--cCCH---HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC-
Q 022892 101 EEVGK-VADIIQIPAFL--CRQT---DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN- 173 (290)
Q Consensus 101 ~~l~~-~~d~~kIgs~~--~~n~---~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~- 173 (290)
..+.+ .++++-||-.+ ...- .+++.+-+.|+-+++.-| +..|...+ ... ++.++-++-.-.-+..
T Consensus 82 ~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVg---e~~e~~~~----~~~-~~~iIayep~waiGtG~ 153 (225)
T 1hg3_A 82 EAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSN---NPAVSAAV----AAL-NPDYVAVEPPELIGTGI 153 (225)
T ss_dssp HHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEES---SHHHHHHH----HTT-CCSEEEECCTTTTTTSC
T ss_pred HHHHHcCCCEEEECcchhcCCHHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHH----hcC-CCCEEEEeChhhhccCC
Confidence 99988 69999999987 4322 344556678999999999 44454333 222 2356666543211111
Q ss_pred ---CCCCC-chhHHH-HHh--cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCC
Q 022892 174 ---DLIVD-PRNLEW-MRE--ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPL 246 (290)
Q Consensus 174 ---~~~~d-L~~i~~-lk~--~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~d 246 (290)
+.+.+ +..... +++ .+++|++-++-. . ..........|+||++|=.-
T Consensus 154 ~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~-----------------~-----~n~~~~~~~~~vDG~LVG~a---- 207 (225)
T 1hg3_A 154 PVSKAKPEVITNTVELVKKVNPEVKVLCGAGIS-----------------T-----GEDVKKAIELGTVGVLLASG---- 207 (225)
T ss_dssp CTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCC-----------------S-----HHHHHHHHHTTCSEEEESHH----
T ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC-----------------c-----HHHHHHHHhCCCCEEEeCHH----
Confidence 22333 333333 344 256777744433 1 23344456779999988543
Q ss_pred CCCCCCCCCCChHHHHHHHHHHH
Q 022892 247 NAPVDGPTQWPLRNLEELLEELV 269 (290)
Q Consensus 247 ka~~D~~~sl~p~~l~~lv~~ir 269 (290)
+|.+++|.++++++.
T Consensus 208 --------~l~a~~~~~~i~~l~ 222 (225)
T 1hg3_A 208 --------VTKAKDPEKAIWDLV 222 (225)
T ss_dssp --------HHTCSSHHHHHHHHH
T ss_pred --------HHCCcCHHHHHHHHH
Confidence 566667777776654
|
| >3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=3.1 Score=40.31 Aligned_cols=157 Identities=11% Similarity=0.027 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH----HHHHHH---h--cCCcEEEeecCcc
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI----LEKVKI---A--YDIPIVTDVHETV 98 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~----L~~~~~---~--~Gi~~~s~~~d~~ 98 (290)
+.+.+++.|+++++. ||+++=-.... |.|++ .....++.++. ++.+.+ + .++++.-+-++++
T Consensus 210 ~~~~al~~A~~mv~~----GAdIIDIGgeS----TrPGa-~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT~~~~ 280 (442)
T 3mcm_A 210 DDNQRKLNLDELIQS----GAEIIDIGAES----TKPDA-KPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDTRKLE 280 (442)
T ss_dssp CCCHHHHHHHHHHHH----TCSEEEEECCC----CCC-----CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEECCCHH
T ss_pred CHHHHHHHHHHHHHC----CCCEEEECCCC----CCCCC-CCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCCHH
Confidence 456789999999885 99988765433 22331 11222344444 344444 3 3899999999999
Q ss_pred cHHHHhh---hcce-e-cccCCccCCHHHHHHHHhcCCeEEEeCCCC--CC-------------HHHHHHHHHHHHHcCC
Q 022892 99 QCEEVGK---VADI-I-QIPAFLCRQTDLLVAAAKTGKIINIKKGQF--CA-------------SSVMVNSAEKVRLAGN 158 (290)
Q Consensus 99 ~~~~l~~---~~d~-~-kIgs~~~~n~~lL~~~a~~~~PVilstG~~--~t-------------l~e~~~Ave~i~~~Gn 158 (290)
.++...+ .+++ + -|.+ .....++..+++.+.||++-.-.. .| .+...+.++.+.+.|-
T Consensus 281 VaeaAL~~~aGa~i~INDVsg--~~d~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~y~dvv~ev~~~l~~~i~~a~~aGI 358 (442)
T 3mcm_A 281 VMQKILAKHHDIIWMINDVEC--NNIEQKAQLIAKYNKKYVIIHNLGITDRNQYLDKENAIDNVCDYIEQKKQILLKHGI 358 (442)
T ss_dssp HHHHHHHHHGGGCCEEEECCC--TTHHHHHHHHHHHTCEEEEECC----------------CTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhCCCCCEEEEcCCC--CCChHHHHHHHHhCCeEEEECCCCCCccccccCcccHHHHHHHHHHHHHHHHHHcCC
Confidence 9988665 4665 3 3443 244578888999999999954222 11 3344556677788885
Q ss_pred C-cEEEEeecCCCCCCC--CCCCchhHHHHHh-cCCCEEEe
Q 022892 159 P-NVMVCERGTMFGYND--LIVDPRNLEWMRE-ANCPVVAD 195 (290)
Q Consensus 159 ~-~i~L~~~gs~~~y~~--~~~dL~~i~~lk~-~~~pV~~D 195 (290)
+ +=+++..|.-|+-.. +--=|+.+..+++ +|+||.+-
T Consensus 359 ~~~~IilDPGiGF~Kt~~~nl~lL~~l~~l~~~lg~PvLvG 399 (442)
T 3mcm_A 359 AQQNIYFDIGFGFGKKSDTARYLLENIIEIKRRLELKALVG 399 (442)
T ss_dssp CGGGEEEECCCC------------CCHHHHHHHHTSEEEEC
T ss_pred CHHHEEEeCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 3 346678876553111 1112467777877 89998763
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=91.52 E-value=0.73 Score=41.87 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
...+++++++|++-.. .+.+.+ .+ .+|++-|+.-.-.+.++..++.+.||+|++.+.++.+++|....++..+
T Consensus 40 ~~a~~~a~~~~~~~~~-----~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~ 114 (334)
T 3ohs_X 40 SRAKEFAQKHDIPKAY-----GSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEAR 114 (334)
T ss_dssp HHHHHHHHHHTCSCEE-----SSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccc-----CCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456677888986322 234444 43 6999999999999999999999999999999999999999998888666
Q ss_pred HcC
Q 022892 155 LAG 157 (290)
Q Consensus 155 ~~G 157 (290)
+.|
T Consensus 115 ~~~ 117 (334)
T 3ohs_X 115 SRG 117 (334)
T ss_dssp HTT
T ss_pred HhC
Confidence 543
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.71 Score=42.51 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=60.1
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..+++++++|++..+ +.+.+ .+ .+|++-|....-...++..++.+.||+|++.+.++.+++|....++..++
T Consensus 65 ~~~~~a~~~g~~~~~------~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~ 138 (350)
T 3rc1_A 65 RAKRFTERFGGEPVE------GYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARE 138 (350)
T ss_dssp HHHHHHHHHCSEEEE------SHHHHHTCTTCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcC------CHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 355677788998752 34444 34 69999999999999999999999999999999999999999998887666
Q ss_pred cC
Q 022892 156 AG 157 (290)
Q Consensus 156 ~G 157 (290)
.|
T Consensus 139 ~g 140 (350)
T 3rc1_A 139 RG 140 (350)
T ss_dssp TT
T ss_pred hC
Confidence 54
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=91.19 E-value=0.57 Score=43.39 Aligned_cols=111 Identities=13% Similarity=0.070 Sum_probs=66.9
Q ss_pred cCCCEEec--cccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec----------CcccHHHHh-------h-
Q 022892 46 VGLPLVFK--SSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH----------ETVQCEEVG-------K- 105 (290)
Q Consensus 46 ~G~~~V~~--~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~----------d~~~~~~l~-------~- 105 (290)
+|+|+|+. ..|-- +++.. ..-+.+..+.+-|+++|+|++.++| ++.+.+.+. +
T Consensus 140 lGADaV~~l~~i~~G----s~~e~---~~l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaEL 212 (307)
T 3fok_A 140 RGVDFAKTLVRINLS----DAGTA---PTLEATAHAVNEAAAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGL 212 (307)
T ss_dssp HTCCEEEEEEEECTT----CTTHH---HHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEEEECCC----ChhHH---HHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHh
Confidence 59999883 33321 11110 0124566677888999999999842 122333332 2
Q ss_pred hcc----eecccCCccCCHHHHHHHHhcCCeEEEeCCCCC-CHHHHHHHHHHHHH-cCCCcEEEEeecC
Q 022892 106 VAD----IIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFC-ASSVMVNSAEKVRL-AGNPNVMVCERGT 168 (290)
Q Consensus 106 ~~d----~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~-tl~e~~~Ave~i~~-~Gn~~i~L~~~gs 168 (290)
..| |+|++-- .. |-+-++....||++.-|... +.+|.++-++.... .|. .=+.+=|..
T Consensus 213 GADs~~tivK~~y~--e~--f~~Vv~a~~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa-~Gv~vGRNI 276 (307)
T 3fok_A 213 GNDSSYTWMKLPVV--EE--MERVMESTTMPTLLLGGEGGNDPDATFASWEHALTLPGV-RGLTVGRTL 276 (307)
T ss_dssp SSCCSSEEEEEECC--TT--HHHHGGGCSSCEEEECCSCC--CHHHHHHHHHHTTSTTE-EEEEECTTT
T ss_pred CCCcCCCEEEeCCc--HH--HHHHHHhCCCCEEEeCCCCCCCHHHHHHHHHHHHHhCCC-eEEeechhh
Confidence 378 9999655 22 33335667899999988874 56788887776666 454 234444544
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=1 Score=44.31 Aligned_cols=129 Identities=17% Similarity=0.065 Sum_probs=71.7
Q ss_pred HHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-eecCCCCCCCCCCCchhHHHHHh-c-------C
Q 022892 120 TDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-ERGTMFGYNDLIVDPRNLEWMRE-A-------N 189 (290)
Q Consensus 120 ~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~-~~gs~~~y~~~~~dL~~i~~lk~-~-------~ 189 (290)
...++++-+ +++||++| |.. +.++...+ ...|-+-|++- |.|+.. ......+..++.+++ . +
T Consensus 332 ~~~i~~lr~~~~~PvivK-gv~-~~e~A~~a----~~aGad~I~vs~hgG~~~--d~~~~~~~~l~~v~~~v~~~~~~~~ 403 (511)
T 1kbi_A 332 WKDIEELKKKTKLPIVIK-GVQ-RTEDVIKA----AEIGVSGVVLSNHGGRQL--DFSRAPIEVLAETMPILEQRNLKDK 403 (511)
T ss_dssp HHHHHHHHHHCSSCEEEE-EEC-SHHHHHHH----HHTTCSEEEECCTTTTSS--TTCCCHHHHHHHHHHHHHTTTCBTT
T ss_pred HHHHHHHHHHhCCcEEEE-eCC-CHHHHHHH----HHcCCCEEEEcCCCCccC--CCCCchHHHHHHHHHHHHhhccCCC
Confidence 455677644 69999999 433 56665443 45676555553 333221 111124566777665 4 6
Q ss_pred CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 022892 190 CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELV 269 (290)
Q Consensus 190 ~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir 269 (290)
+||+.|..=. .| .. +..|+++||++++|=+-+--... ..+... -.+-++.+.+.++
T Consensus 404 ipVia~GGI~----------------~g-----~D-v~kaLalGAdaV~iGr~~l~~~~-~~G~~g-v~~~l~~l~~el~ 459 (511)
T 1kbi_A 404 LEVFVDGGVR----------------RG-----TD-VLKALCLGAKGVGLGRPFLYANS-CYGRNG-VEKAIEILRDEIE 459 (511)
T ss_dssp BEEEEESSCC----------------SH-----HH-HHHHHHHTCSEEEECHHHHHHHH-HHHHHH-HHHHHHHHHHHHH
T ss_pred cEEEEECCCC----------------CH-----HH-HHHHHHcCCCEEEECHHHHHHHH-hcChHH-HHHHHHHHHHHHH
Confidence 8998864322 12 33 44578899999999875421000 000000 0124566777777
Q ss_pred HHHHHhCCccc
Q 022892 270 AIAKVSKGKQR 280 (290)
Q Consensus 270 ~~~~~lg~~~~ 280 (290)
..-...|.+.+
T Consensus 460 ~~m~~~G~~~i 470 (511)
T 1kbi_A 460 MSMRLLGVTSI 470 (511)
T ss_dssp HHHHHHTCCBG
T ss_pred HHHHHhCCCcH
Confidence 77777786544
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.71 Score=43.18 Aligned_cols=96 Identities=10% Similarity=-0.040 Sum_probs=53.0
Q ss_pred HHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC-----CCCCchhHHHHHh----cC
Q 022892 121 DLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND-----LIVDPRNLEWMRE----AN 189 (290)
Q Consensus 121 ~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~-----~~~dL~~i~~lk~----~~ 189 (290)
+.++++-+. +.||++++.+ |.++.+.+++ .|-+-|.+-..+++..... ..-.+.+++.+.+ .+
T Consensus 150 ~~i~~lr~~~~~~~vi~g~v~--t~e~A~~a~~----aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ 223 (351)
T 2c6q_A 150 EFVKDVRKRFPQHTIMAGNVV--TGEMVEELIL----SGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLK 223 (351)
T ss_dssp HHHHHHHHHCTTSEEEEEEEC--SHHHHHHHHH----TTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCeEEEEeCC--CHHHHHHHHH----hCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHhhcC
Confidence 345555333 7899998764 5888776654 6765444421111100000 0012334444432 47
Q ss_pred CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 190 CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 190 ~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+||+.|.-=. .| .. ...|.++||++++|=+-|.
T Consensus 224 ipvIa~GGI~----------------~g-----~d-i~kAlalGA~~V~vG~~fl 256 (351)
T 2c6q_A 224 GHIISDGGCS----------------CP-----GD-VAKAFGAGADFVMLGGMLA 256 (351)
T ss_dssp CEEEEESCCC----------------SH-----HH-HHHHHHTTCSEEEESTTTT
T ss_pred CcEEEeCCCC----------------CH-----HH-HHHHHHcCCCceeccHHHh
Confidence 9998852211 12 23 4468999999999998885
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=91.02 E-value=0.76 Score=43.00 Aligned_cols=77 Identities=9% Similarity=-0.090 Sum_probs=59.8
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-------hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-------VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSA 150 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-------~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Av 150 (290)
..+++++++|++-. .. ..+.+.+.+ .+|++-|.+-+-.+.++..++.+.||+|++.+.++.|++|....+
T Consensus 53 ~a~~~a~~~g~~~~-~~--~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~ 129 (398)
T 3dty_A 53 RGSAFGEQLGVDSE-RC--YADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLR 129 (398)
T ss_dssp HHHHHHHHTTCCGG-GB--CSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHH
T ss_pred HHHHHHHHhCCCcc-ee--eCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHH
Confidence 45667788998510 01 123444432 399999999999999999999999999999999999999999998
Q ss_pred HHHHHcC
Q 022892 151 EKVRLAG 157 (290)
Q Consensus 151 e~i~~~G 157 (290)
+..++.|
T Consensus 130 ~~a~~~g 136 (398)
T 3dty_A 130 ELSHKHN 136 (398)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 8777654
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=90.94 E-value=1.9 Score=38.71 Aligned_cols=68 Identities=12% Similarity=0.050 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..|++..++-+..++-++||..++..+++ .+|++.+|+..+.+ ..|.| .++.- |++|+...++.|.+
T Consensus 10 ~~lr~l~~~~~~i~~~~ayD~~sA~~~~~aG~dai~vg~~s~a~--------~~G~p---D~~~v-t~~em~~~~~~I~r 77 (255)
T 2qiw_A 10 TKFASDHESGKLLVLPTVWDTWSAGLVEEAGFSGLTIGSHPVAD--------ATGSS---DGENM-NFADYMAVVKKITS 77 (255)
T ss_dssp HHHHHHHHTCCCEECCEESSHHHHHHHHHTTCSCEEECHHHHHH--------HTTCC---TTTCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEecCcCHHHHHHHHHcCCCEEEEChHHHHH--------hCCCC---CCCCc-CHHHHHHHHHHHHh
Confidence 34666666666777789999999999988 69999999865443 14666 45555 99999999988765
Q ss_pred c
Q 022892 156 A 156 (290)
Q Consensus 156 ~ 156 (290)
.
T Consensus 78 ~ 78 (255)
T 2qiw_A 78 A 78 (255)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.93 E-value=0.82 Score=44.98 Aligned_cols=105 Identities=10% Similarity=0.093 Sum_probs=66.0
Q ss_pred CHHHHHHHHhcCC-eEEEeC-----CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCC
Q 022892 119 QTDLLVAAAKTGK-IINIKK-----GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCP 191 (290)
Q Consensus 119 n~~lL~~~a~~~~-PVilst-----G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~p 191 (290)
+...++.+--.|. ||.+.. ....+++.++++++.. |...+.++.-+++|.+|...-|++.|..+-. +++|
T Consensus 172 HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIp 248 (501)
T 3hl2_A 172 QKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIP 248 (501)
T ss_dssp CHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCe
Confidence 3445555443333 666655 2334788888887643 4345555554444323434458999988876 8999
Q ss_pred EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CCEEEEeeeC
Q 022892 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVHD 243 (290)
Q Consensus 192 V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G-A~G~~IEkH~ 243 (290)
+++|--|+.+ -.........|..+| ||.++.=.|=
T Consensus 249 llVDeAhGah-----------------~~~~~~lp~sA~~~GrAD~vVqS~HK 284 (501)
T 3hl2_A 249 HIVNNAYGVQ-----------------SSKCMHLIQQGARVGRIDAFVQSLDK 284 (501)
T ss_dssp EEEECTTCTT-----------------CHHHHHHHHHHHHHSCCCEEEEEHHH
T ss_pred EEEeCcchhh-----------------hhhhhhhHHHHHhcCCCcEEEecccc
Confidence 9999989742 122345667788899 9976655553
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=90.91 E-value=0.94 Score=41.91 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=59.4
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..+++++++|++-+. .+.+.+ ++ .+|++-|.+..-.+.++..++.+.||+|++.+.++.+++|....++..++
T Consensus 58 ~a~~~a~~~~~~~~~-----~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~ 132 (383)
T 3oqb_A 58 KVEALAKRFNIARWT-----TDLDAALADKNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANS 132 (383)
T ss_dssp HHHHHHHHTTCCCEE-----SCHHHHHHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccc-----CCHHHHhcCCCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHH
Confidence 456777889996222 234444 44 59999999999999999999999999999999999999999888876665
Q ss_pred cC
Q 022892 156 AG 157 (290)
Q Consensus 156 ~G 157 (290)
.|
T Consensus 133 ~~ 134 (383)
T 3oqb_A 133 KG 134 (383)
T ss_dssp TT
T ss_pred cC
Confidence 54
|
| >2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.87 E-value=14 Score=36.73 Aligned_cols=112 Identities=14% Similarity=0.116 Sum_probs=73.6
Q ss_pred CCeEEEEccCCc----------c-CHHHHHHHHHHHHHHHHHcC-----CCEEeccccccCCCCCcccCCCCChhHHHHH
Q 022892 15 EPFFLLAGPNVI----------E-SEEHIMRMAKHIKSISTKVG-----LPLVFKSSFDKANRTSSKSFRGPGMVEGLKI 78 (290)
Q Consensus 15 ~~~~iIAgpcsi----------e-n~~~~le~Ak~L~~~a~~~G-----~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~ 78 (290)
.++.|++-.++- - +.+.+++.|+++++. | |++|=-.... |.|++- ....++.++.
T Consensus 223 ~~~~iMGIlNvTPDSFsDGG~~~~~~~~al~~a~~mv~~----G~~~~~AdIIDIGgeS----TRPGa~-~vs~eEEl~R 293 (545)
T 2bmb_A 223 SPTYIMAIFNATPDSFSDGGEHFADIESQLNDIIKLCKD----ALYLHESVIIDVGGCS----TRPNSI-QASEEEEIRR 293 (545)
T ss_dssp SCCEEEEEEECSCSSTTTTTTTTTCHHHHHHHHHHHHHH----HHTTCSCEEEEEECSC----CSTTCC-CCCHHHHHHH
T ss_pred CCCeEEEEEeCCCCCCcCCCcCcCCHHHHHHHHHHHHHc----CCCCCCceEEEECCCC----CCCCCC-CCCHHHHHHH
Confidence 456777655541 1 678899999999986 8 9987666433 233321 1222344433
Q ss_pred ----HHHHHH-----hcCCcEEEeecCcccHHHHhh-hcceec-ccCCccCCHHHHHHHHhc-CCeEEEe
Q 022892 79 ----LEKVKI-----AYDIPIVTDVHETVQCEEVGK-VADIIQ-IPAFLCRQTDLLVAAAKT-GKIINIK 136 (290)
Q Consensus 79 ----L~~~~~-----~~Gi~~~s~~~d~~~~~~l~~-~~d~~k-Igs~~~~n~~lL~~~a~~-~~PVils 136 (290)
++.+.+ ..++++..+-+.++.++...+ .++++- |.+.. ....++..+++. +.|+++.
T Consensus 294 vvpvI~~i~~~~~~~~~~vpISIDT~~a~VaeaAl~aGadIINDVsg~~-~d~~m~~vva~~~~~~vVlm 362 (545)
T 2bmb_A 294 SIPLIKAIRESTELPQDKVILSIDTYRSNVAKEAIKVGVDIINDISGGL-FDSNMFAVIAENPEICYILS 362 (545)
T ss_dssp HHHHHHHHHHCSSSCGGGEEEEEECCCHHHHHHHHHTTCCEEEETTTTS-SCTTHHHHHHTCTTSEEEEE
T ss_pred HHHHHHHHHhhccccCCCCeEEEeCCcHHHHHHHHHcCCCEEEeCCCCc-CChHHHHHHHHhCCCeEEEE
Confidence 444433 148999999999998888766 688773 54443 234678889999 9999996
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=90.83 E-value=0.86 Score=41.42 Aligned_cols=172 Identities=17% Similarity=0.117 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHcCCCEE-eccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecC--cccHHHHhh-hcc
Q 022892 33 MRMAKHIKSISTKVGLPLV-FKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE--TVQCEEVGK-VAD 108 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V-~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d--~~~~~~l~~-~~d 108 (290)
.++|+.+.+ .|+++| ...-. |.-. ..+.|.......+.++++++..++|++.-.+. .+.++.+.+ .+|
T Consensus 31 ~~~a~~~~~----~Ga~~I~~l~p~---~~~~-~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~g~~~~~~~~~a~GAd 102 (305)
T 2nv1_A 31 AEQAKIAEE----AGAVAVMALERV---PADI-RAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVD 102 (305)
T ss_dssp HHHHHHHHH----TTCSEEEECCC-----------CCCCCCCCCHHHHHHHHHHCSSCEEEEECTTCHHHHHHHHHHTCS
T ss_pred HHHHHHHHH----cCCCEEEEcCCC---cchh-hhccCcccCCCHHHHHHHHHhCCCCEEecccccchHHHHHHHHCCCC
Confidence 456666655 699998 33200 1100 01222111233567777888899999876554 455566555 588
Q ss_pred eecccCCccCCHHHHHH--HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEe--------------e------
Q 022892 109 IIQIPAFLCRQTDLLVA--AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCE--------------R------ 166 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~--~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~--------------~------ 166 (290)
.+- ++..++..++.+. .-+.+.|+++... +++|...++ ..|.+ .+.++ +
T Consensus 103 ~V~-~~~~l~~~~~~~~i~~~~~g~~v~~~~~---~~~e~~~a~----~~Gad-~V~~~G~~g~g~~~~~~~h~rt~~~~ 173 (305)
T 2nv1_A 103 YID-ESEVLTPADEEFHLNKNEYTVPFVCGCR---DLGEATRRI----AEGAS-MLRTKGEPGTGNIVEAVRHMRKVNAQ 173 (305)
T ss_dssp EEE-ECTTSCCSCSSCCCCGGGCSSCEEEEES---SHHHHHHHH----HTTCS-EEEECCCTTSCCTHHHHHHHHHHHHH
T ss_pred EEE-EeccCCHHHHHHHHHHhccCCcEEEEeC---CHHHHHHHH----HCCCC-EEEeccccCccchHHHHhhhhhhhcc
Confidence 874 5444433222111 1245888888653 788777664 35654 44442 1
Q ss_pred -----cCC-CC-CC---CCCCCchhHHHHHh-cCCCEE--EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 022892 167 -----GTM-FG-YN---DLIVDPRNLEWMRE-ANCPVV--ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 233 (290)
Q Consensus 167 -----gs~-~~-y~---~~~~dL~~i~~lk~-~~~pV~--~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G 233 (290)
|.+ .. |. ....++..+..+++ .++||+ ....-. . +.-+..+..+|
T Consensus 174 i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~~~iPvi~~a~GGI~-----------------~-----~~d~~~~~~~G 231 (305)
T 2nv1_A 174 VRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVA-----------------T-----PADAALMMQLG 231 (305)
T ss_dssp HHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSCEEBCSCCC-----------------S-----HHHHHHHHHTT
T ss_pred chhhccccchhhhcccccccccHHHHHHHHHhcCCCEEEEeccCCC-----------------C-----HHHHHHHHHcC
Confidence 110 00 00 01245667777777 688986 422111 1 22344556789
Q ss_pred CCEEEEeeeC
Q 022892 234 VDGVFMEVHD 243 (290)
Q Consensus 234 A~G~~IEkH~ 243 (290)
|+|+++=+-+
T Consensus 232 adgV~vGsai 241 (305)
T 2nv1_A 232 ADGVFVGSGI 241 (305)
T ss_dssp CSCEEECGGG
T ss_pred CCEEEEcHHH
Confidence 9999998876
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=90.79 E-value=1.5 Score=41.27 Aligned_cols=134 Identities=15% Similarity=0.061 Sum_probs=70.3
Q ss_pred HHHHHHhcCCcEEEeecCccc---HHHHhh-hcceecccCCc---------cCCHHHHHHHHhcCCeEEEeCCCCCCHHH
Q 022892 79 LEKVKIAYDIPIVTDVHETVQ---CEEVGK-VADIIQIPAFL---------CRQTDLLVAAAKTGKIINIKKGQFCASSV 145 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~---~~~l~~-~~d~~kIgs~~---------~~n~~lL~~~a~~~~PVilstG~~~tl~e 145 (290)
+.+.+++.|++++..+.-... +..+.+ .+|++.+.... ....++-+.....+.||+++.. . |.++
T Consensus 147 ~i~~~~~~g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~ggi-~-t~e~ 224 (393)
T 2qr6_A 147 RIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIAGGV-N-DYTT 224 (393)
T ss_dssp HHHHHHHTTSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHCSSCEEEECC-C-SHHH
T ss_pred HHHHHhhcCCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhcCCCEEECCc-C-CHHH
Confidence 344455569888875542222 223323 47776553211 1112232334457999999543 3 7888
Q ss_pred HHHHHHHHHHcCCCcEEEEeecC---CC--CCCCCCCCchhHHHHHh--------cC---CCEEEeCCCCCCCCCCCccC
Q 022892 146 MVNSAEKVRLAGNPNVMVCERGT---MF--GYNDLIVDPRNLEWMRE--------AN---CPVVADVTHSLQQPAGKKLD 209 (290)
Q Consensus 146 ~~~Ave~i~~~Gn~~i~L~~~gs---~~--~y~~~~~dL~~i~~lk~--------~~---~pV~~D~sHs~~~~~~~~~~ 209 (290)
...+. ..|-+-|++- .|. .+ ++. ...+..++.+++ .+ +||+.|..-.
T Consensus 225 a~~~~----~~Gad~i~vg-~Gg~~~~~~~~~g--~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~---------- 287 (393)
T 2qr6_A 225 ALHMM----RTGAVGIIVG-GGENTNSLALGME--VSMATAIADVAAARRDYLDETGGRYVHIIADGSIE---------- 287 (393)
T ss_dssp HHHHH----TTTCSEEEES-CCSCCHHHHTSCC--CCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCC----------
T ss_pred HHHHH----HcCCCEEEEC-CCcccccccCCCC--CChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCC----------
Confidence 66554 4677666662 211 10 111 123445544332 23 8998853322
Q ss_pred CCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 210 GGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 210 ~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.+ .. +..|+++||++++|=+-|
T Consensus 288 ------~~-----~d-v~kalalGA~~V~iG~~~ 309 (393)
T 2qr6_A 288 ------NS-----GD-VVKAIACGADAVVLGSPL 309 (393)
T ss_dssp ------SH-----HH-HHHHHHHTCSEEEECGGG
T ss_pred ------CH-----HH-HHHHHHcCCCEEEECHHH
Confidence 12 23 345688999999998876
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=90.72 E-value=3.4 Score=38.11 Aligned_cols=100 Identities=13% Similarity=0.051 Sum_probs=66.0
Q ss_pred HHHHHHHhcCCeEEEeCCC--CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cC----CCEE
Q 022892 121 DLLVAAAKTGKIINIKKGQ--FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN----CPVV 193 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~--~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~----~pV~ 193 (290)
+.++++-+.++.|.+..-. -.+++.+.+.++.+...|...|.|+..... ..|.. + ..-+..+++ ++ +|++
T Consensus 126 ~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~-~~P~~-v-~~lv~~l~~~~~~~~~~~i~ 202 (325)
T 3eeg_A 126 AAVKQAKKVVHEVEFFCEDAGRADQAFLARMVEAVIEAGADVVNIPDTTGY-MLPWQ-Y-GERIKYLMDNVSNIDKAILS 202 (325)
T ss_dssp HHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHHHHHHTCSEEECCBSSSC-CCHHH-H-HHHHHHHHHHCSCGGGSEEE
T ss_pred HHHHHHHHCCCEEEEEccccccchHHHHHHHHHHHHhcCCCEEEecCccCC-cCHHH-H-HHHHHHHHHhCCCCCceEEE
Confidence 4556667788888776421 238888888888888889887766665442 12221 2 144566776 54 8899
Q ss_pred EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 194 ~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+ +.|-. +.+...-+.+|+.+||+ .++.=+.
T Consensus 203 ~-H~Hnd------------------~GlA~AN~laA~~aGa~--~vd~tv~ 232 (325)
T 3eeg_A 203 A-HCHND------------------LGLATANSLAALQNGAR--QVECTIN 232 (325)
T ss_dssp E-CBCCT------------------TSCHHHHHHHHHHHTCC--EEEEBGG
T ss_pred E-EeCCC------------------CCHHHHHHHHHHHhCCC--EEEEecc
Confidence 8 77763 22335567789999998 7777653
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.71 E-value=0.88 Score=43.03 Aligned_cols=74 Identities=8% Similarity=-0.063 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCc---EEEeecCcccHHHHhh-------hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHH
Q 022892 78 ILEKVKIAYDIP---IVTDVHETVQCEEVGK-------VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMV 147 (290)
Q Consensus 78 ~L~~~~~~~Gi~---~~s~~~d~~~~~~l~~-------~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~ 147 (290)
..+++++++|++ +.+ +.+.+.+ .+|++-|.+-.-.+.++..++.+.||+|++.+.++.+++|..
T Consensus 78 ~a~~~a~~~g~~~~~~~~------~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~ 151 (417)
T 3v5n_A 78 KAEASGRELGLDPSRVYS------DFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAK 151 (417)
T ss_dssp HHHHHHHHHTCCGGGBCS------CHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHH
T ss_pred HHHHHHHHcCCCcccccC------CHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHH
Confidence 456777888985 322 3444433 399999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 022892 148 NSAEKVRLAG 157 (290)
Q Consensus 148 ~Ave~i~~~G 157 (290)
..++..++.|
T Consensus 152 ~l~~~a~~~g 161 (417)
T 3v5n_A 152 KLKKAADESD 161 (417)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHHcC
Confidence 8887666554
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=90.67 E-value=7.6 Score=33.46 Aligned_cols=163 Identities=13% Similarity=0.153 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCccc---------H
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQ---------C 100 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~---------~ 100 (290)
....++++.+.......+++.++...|. -+ ..+++..++|+..-=.++.+ +
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~l---~~v~~~~~~~v~aqd~~~~~~ga~tGei~~ 75 (219)
T 2h6r_A 16 NRGLEIAKIAEKVSEESGITIGVAPQFV-----------------DL---RMIVENVNIPVYAQHIDNINPGSHTGHILA 75 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECCTT-----------------TH---HHHHHHCCSCBEESCCCSCCSBSCTTCCCH
T ss_pred HHHHHHHHHHHhcccccCCcEEEECCHH-----------------HH---HHHHHHcCCcEEEEECChhhcCCccCchHH
Confidence 5677888888765444456666554333 12 33344458999983344545 8
Q ss_pred HHHhh-hcceecccCCc--cC---CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-----
Q 022892 101 EEVGK-VADIIQIPAFL--CR---QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM----- 169 (290)
Q Consensus 101 ~~l~~-~~d~~kIgs~~--~~---n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~----- 169 (290)
+.+.+ .+|++-||..+ .. -..+++.+-+.|+.+++.-+.. +|...+ ...|. .++-++....
T Consensus 76 ~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~~~---~e~~~~----~~~~~-~~i~~~~~~~iGtG~ 147 (219)
T 2h6r_A 76 EAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNNI---NTSKAV----AALSP-DCIAVEPPELIGTGI 147 (219)
T ss_dssp HHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEESSS---HHHHHH----TTTCC-SEEEECCCC------
T ss_pred HHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeCCc---hHHHHH----HhCCC-CEEEEEeccccccCC
Confidence 88887 69999998753 21 1245555667899999998854 233332 22233 3444443220
Q ss_pred --CCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 170 --FGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 170 --~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
-......+. .....+|+ . ++||++..+=. . +..+......|+||+++=+-+
T Consensus 148 ~~~t~~~~~~~-~~~~~ir~~~~~~~ii~ggGI~-----------------~-----~~~~~~~~~~gaDgvlVGsAi 202 (219)
T 2h6r_A 148 PVSKANPEVVE-GTVRAVKEINKDVKVLCGAGIS-----------------K-----GEDVKAALDLGAEGVLLASGV 202 (219)
T ss_dssp --------CSH-HHHHHHHHHCTTCEEEECSSCC-----------------S-----HHHHHHHHTTTCCCEEESHHH
T ss_pred CCccCCHHHHH-HHHHHHHhccCCCeEEEEeCcC-----------------c-----HHHHHHHhhCCCCEEEEcHHH
Confidence 001111122 34444555 3 78888743322 1 344555677899999986543
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=90.34 E-value=1.3 Score=42.09 Aligned_cols=133 Identities=19% Similarity=0.054 Sum_probs=74.8
Q ss_pred CHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEE
Q 022892 119 QTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVA 194 (290)
Q Consensus 119 n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~ 194 (290)
..+.++++-+ +++||++| |.. +.++.+.+ ...|-+-|++--.|....+ ....++..++.+++ . ++||+.
T Consensus 240 ~~~~i~~lr~~~~~PvivK-gv~-~~e~A~~a----~~aGad~I~vs~~ggr~~~-~g~~~~~~l~~v~~av~~~ipVia 312 (392)
T 2nzl_A 240 SWEDIKWLRRLTSLPIVAK-GIL-RGDDAREA----VKHGLNGILVSNHGARQLD-GVPATIDVLPEIVEAVEGKVEVFL 312 (392)
T ss_dssp CHHHHHHHC--CCSCEEEE-EEC-CHHHHHHH----HHTTCCEEEECCGGGTSST-TCCCHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHhhCCCEEEE-ecC-CHHHHHHH----HHcCCCEEEeCCCCCCcCC-CCcChHHHHHHHHHHcCCCCEEEE
Confidence 3455676644 68999999 444 77776554 4567665665433332111 11235567777776 4 599988
Q ss_pred eCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 195 D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
|..=. .| .. +..|+++||++++|=+-+--... ..+... -.+-++.+.++++..-..
T Consensus 313 ~GGI~----------------~g-----~D-v~kalalGAd~V~iGr~~l~~~~-~~g~~g-v~~~l~~l~~el~~~m~~ 368 (392)
T 2nzl_A 313 DGGVR----------------KG-----TD-VLKALALGAKAVFVGRPIVWGLA-FQGEKG-VQDVLEILKEEFRLAMAL 368 (392)
T ss_dssp CSSCC----------------SH-----HH-HHHHHHTTCSEEEECHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ECCCC----------------CH-----HH-HHHHHHhCCCeeEECHHHHHHHH-hcChHH-HHHHHHHHHHHHHHHHHH
Confidence 53322 12 33 44568899999999874421000 000000 012466677777777777
Q ss_pred hCCccccc
Q 022892 275 SKGKQRMN 282 (290)
Q Consensus 275 lg~~~~~~ 282 (290)
.|.+.+-+
T Consensus 369 ~G~~~i~e 376 (392)
T 2nzl_A 369 SGCQNVKV 376 (392)
T ss_dssp HTCSBGGG
T ss_pred hCCCcHHH
Confidence 88755443
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=90.34 E-value=8 Score=35.50 Aligned_cols=174 Identities=15% Similarity=0.083 Sum_probs=94.9
Q ss_pred HHhcCCcEEEee-cCcccHHH---Hhh-h--cceecccCC--c-cCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 83 KIAYDIPIVTDV-HETVQCEE---VGK-V--ADIIQIPAF--L-CRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 83 ~~~~Gi~~~s~~-~d~~~~~~---l~~-~--~d~~kIgs~--~-~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
+++.|+++...+ .+++.++. +.+ . ++++.|... + ..+.+.++++.+ ++.|++++-+.. +.++.+.++
T Consensus 90 ~~~~g~~v~v~~g~~~~~~~~a~~~~~~g~~~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~-s~e~A~~a~- 167 (336)
T 1ypf_A 90 MQSRGLIASISVGVKEDEYEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVG-TPEAVRELE- 167 (336)
T ss_dssp HHHTTCCCEEEECCSHHHHHHHHHHHHTTCCCSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEEC-SHHHHHHHH-
T ss_pred HHhcCCeEEEeCCCCHHHHHHHHHHHhcCCCCCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcC-CHHHHHHHH-
Confidence 455687766653 23333333 333 3 677665321 1 123456677654 344555553233 777766654
Q ss_pred HHHHcCCCcEEEE-eecCCC--------CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCccc
Q 022892 152 KVRLAGNPNVMVC-ERGTMF--------GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 221 (290)
Q Consensus 152 ~i~~~Gn~~i~L~-~~gs~~--------~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~ 221 (290)
..|-+-|++- |.|... +.+ ...+..++.+++ .++||+.|..=. .+
T Consensus 168 ---~aGad~Ivvs~hgG~~~~~~~~~~~g~~--g~~~~~l~~v~~~~~ipVIa~GGI~----------------~g---- 222 (336)
T 1ypf_A 168 ---NAGADATKVGIGPGKVCITKIKTGFGTG--GWQLAALRWCAKAASKPIIADGGIR----------------TN---- 222 (336)
T ss_dssp ---HHTCSEEEECSSCSTTCHHHHHHSCSST--TCHHHHHHHHHHTCSSCEEEESCCC----------------ST----
T ss_pred ---HcCCCEEEEecCCCceeecccccCcCCc--hhHHHHHHHHHHHcCCcEEEeCCCC----------------CH----
Confidence 4576555552 222210 111 014567777777 689999864322 13
Q ss_pred HHHHHHHHHHcCCCEEEEeeeCCCC-C-----------------CC-CCCCC-------CCC---------hHHHHHHHH
Q 022892 222 IPCIARTAIAVGVDGVFMEVHDDPL-N-----------------AP-VDGPT-------QWP---------LRNLEELLE 266 (290)
Q Consensus 222 ~~~~a~aAva~GA~G~~IEkH~t~d-k-----------------a~-~D~~~-------sl~---------p~~l~~lv~ 266 (290)
..+. .|.++||++++|=+-|--- . .+ +.... -.+ .+-++.|++
T Consensus 223 -~Dv~-kalalGAdaV~iGr~~l~t~Es~~~~~~~~g~~~k~~~g~~~~~~~g~~~~~~g~~~~~~~~g~~~~~~~~l~~ 300 (336)
T 1ypf_A 223 -GDVA-KSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYKEYFGSASEFQKGEKKNVEGKKMFVEHKGSLEDTLIEMEQ 300 (336)
T ss_dssp -HHHH-HHHHTTCSEEEESGGGTTCTTSSSCCC-----------------------CTTSCCSSSSCCCCHHHHHHHHHH
T ss_pred -HHHH-HHHHcCCCEEEeChhhhccccCCCceeeeCCeEeeeeecccchhhccCccccccceeeecccccHHHHHHHHHH
Confidence 3444 5688999999998877521 0 10 00000 000 156788899
Q ss_pred HHHHHHHHhCCccccccCC
Q 022892 267 ELVAIAKVSKGKQRMNIDL 285 (290)
Q Consensus 267 ~ir~~~~~lg~~~~~~~~~ 285 (290)
+++..-..+|.+++-++..
T Consensus 301 el~~~m~~~G~~~i~el~~ 319 (336)
T 1ypf_A 301 DLQSSISYAGGTKLDSIRT 319 (336)
T ss_dssp HHHHHHHHTTSSBGGGGGG
T ss_pred HHHHHHHHhCcccHHHhCc
Confidence 9999988889877766543
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=90.30 E-value=1.2 Score=41.60 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=59.2
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.+++++++|+++.+ +++.+ .+ .+|++-|..-.-.+.++..++.+.||+|++.+.++.+++|....++..++.
T Consensus 41 ~~~~a~~~g~~~~~------~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 114 (387)
T 3moi_A 41 RERFGKEYGIPVFA------TLAEMMQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERA 114 (387)
T ss_dssp HHHHHHHHTCCEES------SHHHHHHHSCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEC------CHHHHHcCCCCCEEEEcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHh
Confidence 45566778998543 34444 44 599999999998899999999999999999999999999999888877666
Q ss_pred C
Q 022892 157 G 157 (290)
Q Consensus 157 G 157 (290)
|
T Consensus 115 g 115 (387)
T 3moi_A 115 G 115 (387)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=90.16 E-value=5.7 Score=38.59 Aligned_cols=115 Identities=16% Similarity=0.131 Sum_probs=74.8
Q ss_pred hcceeccc--CCccCCH-HHHHHHHhcCCeEE--Ee--CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC
Q 022892 106 VADIIQIP--AFLCRQT-DLLVAAAKTGKIIN--IK--KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD 178 (290)
Q Consensus 106 ~~d~~kIg--s~~~~n~-~lL~~~a~~~~PVi--ls--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d 178 (290)
.+|.+-|- ..++.|. +.++++-+.|+.|. ++ -|.-.+++.+.+.++.+...|.+.|.|+.-... ..|.. +
T Consensus 113 Gvd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~-~~P~~-v- 189 (464)
T 2nx9_A 113 GMDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALKDMAGI-LTPYA-A- 189 (464)
T ss_dssp TCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEEEETTSC-CCHHH-H-
T ss_pred CcCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCC-cCHHH-H-
Confidence 35554433 2333444 45566667888874 32 244448899999999999999988888876552 12221 1
Q ss_pred chhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 179 PRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 179 L~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
..-+..+++ +++||++ +.|-. .| +...-+.+|+.+||+ +|+.-+.
T Consensus 190 ~~lv~~l~~~~~~~i~~-H~Hnd---------------~G---lAvAN~laAv~AGa~--~VD~ti~ 235 (464)
T 2nx9_A 190 EELVSTLKKQVDVELHL-HCHST---------------AG---LADMTLLKAIEAGVD--RVDTAIS 235 (464)
T ss_dssp HHHHHHHHHHCCSCEEE-EECCT---------------TS---CHHHHHHHHHHTTCS--EEEEBCG
T ss_pred HHHHHHHHHhcCCeEEE-EECCC---------------CC---hHHHHHHHHHHhCCC--EEEEecc
Confidence 144566777 7899999 88864 12 335567789999998 8887665
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=90.15 E-value=0.9 Score=41.57 Aligned_cols=75 Identities=13% Similarity=0.044 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHH-Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEE-VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~-l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..+++++++|++-.. .+.+. +.+ .+|++-|.+-.-...++..++.+.||+|++.+.++.|++|....++..++
T Consensus 57 ~~~~~a~~~~~~~~~-----~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 57 HAEEFAKMVGNPAVF-----DSYEELLESGLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp HHHHHHHHHSSCEEE-----SCHHHHHHSSCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccc-----CCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 345667788873221 23444 444 69999999999889999999999999999999999999999988887665
Q ss_pred cC
Q 022892 156 AG 157 (290)
Q Consensus 156 ~G 157 (290)
.|
T Consensus 132 ~g 133 (340)
T 1zh8_A 132 SE 133 (340)
T ss_dssp CS
T ss_pred cC
Confidence 54
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=90.10 E-value=3.9 Score=39.29 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE-eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT-DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s-~~~d~~~~~~l~~-~~d 108 (290)
.++.|+++.+ +|++++..+.-. +. ....+..+.++++.+ ++|++. .+.+.+.+..+.+ .+|
T Consensus 234 ~~~~a~~l~~----~G~d~ivi~~a~-----------g~-~~~~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad 297 (491)
T 1zfj_A 234 TFERAEALFE----AGADAIVIDTAH-----------GH-SAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVD 297 (491)
T ss_dssp HHHHHHHHHH----HTCSEEEECCSC-----------TT-CHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCS
T ss_pred HHHHHHHHHH----cCCCeEEEeeec-----------Cc-chhHHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcCCC
Confidence 4566666666 599998876411 11 134566777888888 888875 5666666766666 699
Q ss_pred eecccCC-------------ccCCHHHHHHHHh----cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 109 IIQIPAF-------------LCRQTDLLVAAAK----TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 109 ~~kIgs~-------------~~~n~~lL~~~a~----~~~PVilstG~~~tl~e~~~Ave 151 (290)
.+.||.. ...+...+++++. .+.||+.+-|.. +..++..|..
T Consensus 298 ~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~-~~~di~kal~ 356 (491)
T 1zfj_A 298 VVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIK-YSGDIVKALA 356 (491)
T ss_dssp EEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCC-SHHHHHHHHH
T ss_pred EEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCC-CHHHHHHHHH
Confidence 9988731 2345666666554 789999999999 9999998864
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=90.01 E-value=7.6 Score=32.41 Aligned_cols=169 Identities=14% Similarity=0.078 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE--eecC-ccc-HHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT--DVHE-TVQ-CEE 102 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s--~~~d-~~~-~~~ 102 (290)
+.+..++.++++.+ |+++++... . . | +..|...++++.+.+ +++++. -++| +.. ++.
T Consensus 11 ~~~~~~~~~~~~~~-----~v~~iev~~-~---~-----~----~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~ 72 (207)
T 3ajx_A 11 STEAALELAGKVAE-----YVDIIELGT-P---L-----I----KAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADI 72 (207)
T ss_dssp CHHHHHHHHHHHGG-----GCSEEEECH-H---H-----H----HHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHH
T ss_pred CHHHHHHHHHHhhc-----cCCEEEECc-H---H-----H----HhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHH
Confidence 45555555555533 778766521 1 0 1 134445555555556 777775 3556 333 555
Q ss_pred Hhh-hcceecccCCc--cCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCc
Q 022892 103 VGK-VADIIQIPAFL--CRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP 179 (290)
Q Consensus 103 l~~-~~d~~kIgs~~--~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL 179 (290)
+.+ .+|++-+.... ..-..+++.+.+.|+++.++.-...|+++....+ ...|- +.+-++.+....+.. .+.
T Consensus 73 a~~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~---~~~g~-d~v~~~~~~~~~~~g--~~~ 146 (207)
T 3ajx_A 73 AFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEV---RALGA-KFVEMHAGLDEQAKP--GFD 146 (207)
T ss_dssp HHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHH---HHTTC-SEEEEECCHHHHTST--TCC
T ss_pred HHhCCCCEEEEeccCChHHHHHHHHHHHHcCCceEEEEecCCChHHHHHHH---HHhCC-CEEEEEecccccccC--CCc
Confidence 555 58888653221 2222444555566888866543221677733332 23454 444233332100111 112
Q ss_pred hhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 180 RNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 180 ~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.. ..+|+ . ++||.++. |.+ +.-+..+++.||+|+++=+-++
T Consensus 147 ~~-~~i~~~~~~~~pi~v~G--------------------GI~---~~~~~~~~~aGad~vvvGsaI~ 190 (207)
T 3ajx_A 147 LN-GLLAAGEKARVPFSVAG--------------------GVK---VATIPAVQKAGAEVAVAGGAIY 190 (207)
T ss_dssp TH-HHHHHHHHHTSCEEEES--------------------SCC---GGGHHHHHHTTCSEEEESHHHH
T ss_pred hH-HHHHHhhCCCCCEEEEC--------------------CcC---HHHHHHHHHcCCCEEEEeeecc
Confidence 22 44555 3 78988752 211 1234556889999999877663
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.91 E-value=3.8 Score=37.22 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=42.1
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
++++-||||.++. |...+++.+++..+ +|+|++.-.. |+ |.++.-+.-+...+++++..++|++-
T Consensus 71 ~grvpviaGvg~~-~t~~ai~la~~a~~----~Gadavlv~~--------P~-y~~~~~~~l~~~f~~va~a~~lPiil 135 (300)
T 3eb2_A 71 QRRVPVVAGVAST-SVADAVAQAKLYEK----LGADGILAIL--------EA-YFPLKDAQIESYFRAIADAVEIPVVI 135 (300)
T ss_dssp TTSSCBEEEEEES-SHHHHHHHHHHHHH----HTCSEEEEEE--------CC-SSCCCHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCcEEEeCCCC-CHHHHHHHHHHHHH----cCCCEEEEcC--------CC-CCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 4567789998864 66667777766555 6999876531 22 21222133455677888888999874
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=89.90 E-value=2.7 Score=35.42 Aligned_cols=104 Identities=16% Similarity=0.097 Sum_probs=64.7
Q ss_pred HHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCccc----HHHHhh-hcceecccC
Q 022892 40 KSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQ----CEEVGK-VADIIQIPA 114 (290)
Q Consensus 40 ~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~----~~~l~~-~~d~~kIgs 114 (290)
++.+.++|++.|...... .++.+..+.+.++++|+.++.++..+.. +..+.+ .+|++.+..
T Consensus 70 ~~~~~~~Gad~v~v~~~~--------------~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~ 135 (211)
T 3f4w_A 70 SQLLFDAGADYVTVLGVT--------------DVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHT 135 (211)
T ss_dssp HHHHHHTTCSEEEEETTS--------------CHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHhcCCCEEEEeCCC--------------ChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 344455688777653221 1466788999999999999877555543 455555 488887642
Q ss_pred C------ccCCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 115 F------LCRQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 115 ~------~~~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
+ ...+.+.++++.+. +.||+..-|.. .+++..+ ...|.+-+++
T Consensus 136 g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI~--~~~~~~~----~~~Gad~vvv 186 (211)
T 3f4w_A 136 GTDQQAAGRKPIDDLITMLKVRRKARIAVAGGIS--SQTVKDY----ALLGPDVVIV 186 (211)
T ss_dssp CHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCC--TTTHHHH----HTTCCSEEEE
T ss_pred CCcccccCCCCHHHHHHHHHHcCCCcEEEECCCC--HHHHHHH----HHcCCCEEEE
Confidence 2 11366777777653 68998887764 5555443 3456544433
|
| >3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} | Back alignment and structure |
|---|
Probab=89.72 E-value=1 Score=43.86 Aligned_cols=126 Identities=9% Similarity=0.106 Sum_probs=86.9
Q ss_pred HHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC--CcEEEeecCcccHHHHhh---hcceecccCCc
Q 022892 42 ISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD--IPIVTDVHETVQCEEVGK---VADIIQIPAFL 116 (290)
Q Consensus 42 ~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G--i~~~s~~~d~~~~~~l~~---~~d~~kIgs~~ 116 (290)
.+.+.|+|.|....-.. .+.+.+++++..+.| +.+++-+-.++.++-+.+ ..|-+-||-+|
T Consensus 191 ~~~~~~vD~Ia~SfVr~--------------a~Dv~~~r~~l~~~g~~~~iiaKIE~~eav~nldeIl~~sDgImVaRGD 256 (461)
T 3qtg_A 191 SPIRDNIDYVAISLAKS--------------CKDVDSVRSLLTELGFQSQVAVKIETKGAVNNLEELVQCSDYVVVARGD 256 (461)
T ss_dssp GGGGGGCCEEEECSCCS--------------HHHHHHHHHHHHHTTCCCEEEEEECSHHHHHTHHHHHHTCSEEEEEHHH
T ss_pred HHhhcCCCEEEecCCCC--------------HHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcccEEEcccc
Confidence 55667999887753331 478899999998876 889999999988776666 47888888776
Q ss_pred c-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC
Q 022892 117 C-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 117 ~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~ 177 (290)
+ -|-.+++.+-..||||+.-|-|- .|-.|+-..+..+. .|-+-++|---+..-.||-
T Consensus 257 Lgvei~~e~v~~~Qk~ii~~~~~~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAV~-dGaDavMLSgETA~G~yPv--- 332 (461)
T 3qtg_A 257 LGLHYGLDALPIVQRRIVHTSLKYGKPIAVATQLLDSMQSSPIPTRAEINDVFTTAS-MGVDSLWLTNETASGKYPL--- 332 (461)
T ss_dssp HTTTSCTTTHHHHHHHHHHHHHHTTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHH-TTCSEEEECHHHHTSSCHH---
T ss_pred ccccCCHHHHHHHHHHHHHHHHHhCCCEEEeccchHhhccCCCccHHHHHHHHHHHH-hCCcEEEEcccccCCCCHH---
Confidence 6 34456777778999999955542 37788888887775 4665555532222223664
Q ss_pred CchhHHHHHh
Q 022892 178 DPRNLEWMRE 187 (290)
Q Consensus 178 dL~~i~~lk~ 187 (290)
.++.+|.+
T Consensus 333 --eaV~~m~~ 340 (461)
T 3qtg_A 333 --AAVSWLSR 340 (461)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHHH
Confidence 45566643
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=89.71 E-value=1.6 Score=39.15 Aligned_cols=158 Identities=13% Similarity=0.154 Sum_probs=86.4
Q ss_pred c-CCcEEEeecCc--ccHHH----Hh--hhcceecccC----------CccCC----HHHHHHHHh-cCCeEEEeCCCCC
Q 022892 86 Y-DIPIVTDVHET--VQCEE----VG--KVADIIQIPA----------FLCRQ----TDLLVAAAK-TGKIINIKKGQFC 141 (290)
Q Consensus 86 ~-Gi~~~s~~~d~--~~~~~----l~--~~~d~~kIgs----------~~~~n----~~lL~~~a~-~~~PVilstG~~~ 141 (290)
. +.++...++-. ++... +. ..+|++.|.- ....+ .++++++.+ .+.||++|....
T Consensus 96 ~~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~~- 174 (311)
T 1ep3_A 96 FPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPN- 174 (311)
T ss_dssp CTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSC-
T ss_pred CCCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC-
Confidence 5 88999888754 22222 22 2366665421 11123 345555544 489999997633
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeec--------CCC--------CCCCCC---CCchhHHHHHh-cCCCEEEeCCCCCC
Q 022892 142 ASSVMVNSAEKVRLAGNPNVMVCERG--------TMF--------GYNDLI---VDPRNLEWMRE-ANCPVVADVTHSLQ 201 (290)
Q Consensus 142 tl~e~~~Ave~i~~~Gn~~i~L~~~g--------s~~--------~y~~~~---~dL~~i~~lk~-~~~pV~~D~sHs~~ 201 (290)
..++...++.+...|-+-|++.... +.. +|.... ..+..+..+++ .++||+....-.
T Consensus 175 -~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~-- 251 (311)
T 1ep3_A 175 -VTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVA-- 251 (311)
T ss_dssp -SSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCC--
T ss_pred -hHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcC--
Confidence 2233444555667787666653211 100 010000 12355666777 789998732211
Q ss_pred CCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCc
Q 022892 202 QPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGK 278 (290)
Q Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~ 278 (290)
. ..-+..++++||+++++=+.+.- +|+-++++.+.++..-...|-+
T Consensus 252 ---------------~-----~~d~~~~l~~GAd~V~vg~~~l~-----------~p~~~~~i~~~l~~~~~~~g~~ 297 (311)
T 1ep3_A 252 ---------------N-----AQDVLEMYMAGASAVAVGTANFA-----------DPFVCPKIIDKLPELMDQYRIE 297 (311)
T ss_dssp ---------------S-----HHHHHHHHHHTCSEEEECTHHHH-----------CTTHHHHHHHHHHHHHHHTTCS
T ss_pred ---------------C-----HHHHHHHHHcCCCEEEECHHHHc-----------CcHHHHHHHHHHHHHHHHcCCC
Confidence 1 33455667889999998877622 3556777777776655555543
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.70 E-value=0.86 Score=41.51 Aligned_cols=79 Identities=18% Similarity=0.080 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 153 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i 153 (290)
.+.+.+.++++|+.. ..| .+.+.+ .+ .+|++-|.+-.-.+.++..++.+.||+|++.+.++.+++|....++..
T Consensus 39 ~~~~~~~~~~~~~~~--~~~--~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 114 (337)
T 3ip3_A 39 LSKLEKAISEMNIKP--KKY--NNWWEMLEKEKPDILVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVY 114 (337)
T ss_dssp CHHHHHHHHTTTCCC--EEC--SSHHHHHHHHCCSEEEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC--ccc--CCHHHHhcCCCCCEEEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 345566677788742 122 344444 43 599999999988888999999999999999999999999999999988
Q ss_pred HHcCC
Q 022892 154 RLAGN 158 (290)
Q Consensus 154 ~~~Gn 158 (290)
++.|.
T Consensus 115 ~~~g~ 119 (337)
T 3ip3_A 115 QKVRN 119 (337)
T ss_dssp HHHTT
T ss_pred HHhCC
Confidence 87764
|
| >3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A* | Back alignment and structure |
|---|
Probab=89.70 E-value=1.2 Score=43.12 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=61.0
Q ss_pred cceecccCCccC-CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEeecCCCCCCCCCCC--c-hh
Q 022892 107 ADIIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN-PNVMVCERGTMFGYNDLIVD--P-RN 181 (290)
Q Consensus 107 ~d~~kIgs~~~~-n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn-~~i~L~~~gs~~~y~~~~~d--L-~~ 181 (290)
..+++||-|+=+ +-..++.+.+..=||.+|-|.+++++|+.+-++.+--... -++.|+-|= +... |. | .-
T Consensus 276 aH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~elv~L~~~LnP~~epGRlTLI~Rm---Ga~k--v~~~LP~l 350 (462)
T 3rzi_A 276 AHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRM---GNHK--VRDLLPPI 350 (462)
T ss_dssp CSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEECC---CTTT--HHHHHHHH
T ss_pred cccceeccccCCCCccHHHHHhcCCCCeeEeECCCCCHHHHHHHHHHhCCCCCCCeEEEEEcc---CCch--hhhhHHHH
Confidence 448899988653 3345577788888999999999999999999998732211 259998883 3322 22 1 22
Q ss_pred HHHHHhcCCCEEE--eCCCCC
Q 022892 182 LEWMREANCPVVA--DVTHSL 200 (290)
Q Consensus 182 i~~lk~~~~pV~~--D~sHs~ 200 (290)
|...++.|.+|++ |+=|+|
T Consensus 351 i~aV~~~G~~VvW~cDPMHGN 371 (462)
T 3rzi_A 351 VEKVQATGHQVIWQCDPMHGN 371 (462)
T ss_dssp HHHHHHTSCCCEEEECCSTTS
T ss_pred HHHHHHCCCCeEEEeCCCCCC
Confidence 3333447888876 777986
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=89.55 E-value=6.4 Score=38.15 Aligned_cols=188 Identities=16% Similarity=0.124 Sum_probs=112.0
Q ss_pred hhHHhhhcCCCCeEEEEccC-------CccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH
Q 022892 5 TALFNQLKAAEPFFLLAGPN-------VIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK 77 (290)
Q Consensus 5 ~~~~~~i~~~~~~~iIAgpc-------sien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~ 77 (290)
.+++..+... .+-||||.= .|.......++|+...+ . |.++.- .|-+..|+| .+.
T Consensus 37 r~f~~al~~~-~~~vIaEvKraSPSkG~i~~~~~~~~iA~~y~~----~-A~~Isv-------LTd~~~F~g-----s~~ 98 (452)
T 1pii_A 37 RHFYDALQGA-RTAFILECKKASPSKGVIRDDFDPARIAAIYKH----Y-ASAISV-------LTDEKYFQG-----SFN 98 (452)
T ss_dssp SCHHHHHCSS-SCEEEEEECSEETTTEESCSSCCHHHHHHHHTT----T-CSEEEE-------ECCSTTTCC-----CTT
T ss_pred CCHHHHHhcC-CCceEEEecCCCCCCCccCCCCCHHHHHHHHHh----h-CcEEEE-------EecccccCC-----CHH
Confidence 3566666433 478999863 22211123455554433 3 666542 222333543 345
Q ss_pred HHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcceecccCCccCC---HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTD--VHETVQCEEVGK-VADIIQIPAFLCRQ---TDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~~n---~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
.|+++++..++|++.- +.|+.++..+.. .+|++-+=...+.. ..|++.+-++|+.+++... |.+|+..|++
T Consensus 99 dL~~vr~~v~lPvLrKDFI~d~~Qi~ea~~~GAD~ILLi~a~l~~~~l~~l~~~a~~lgm~~LvEvh---~~eE~~~A~~ 175 (452)
T 1pii_A 99 FLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVS---NEEEQERAIA 175 (452)
T ss_dssp HHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEEC---SHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEeccCCHHHHHHHHHcCCCEEEEEcccCCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHH
Confidence 5666666789999874 345555555555 58876554444543 2456666779999999987 8999998875
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 022892 152 KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 228 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~a 228 (290)
.|.+=|-+-.|+ |....+|+.....|.. . +++|+.-|-=. . +.-+..
T Consensus 176 ----lga~iIGinnr~----L~t~~~dl~~~~~L~~~ip~~~~vIaEsGI~-----------------t-----~edv~~ 225 (452)
T 1pii_A 176 ----LGAKVVGINNRD----LRDLSIDLNRTRELAPKLGHNVTVISESGIN-----------------T-----YAQVRE 225 (452)
T ss_dssp ----TTCSEEEEESEE----TTTTEECTHHHHHHHHHHCTTSEEEEESCCC-----------------C-----HHHHHH
T ss_pred ----CCCCEEEEeCCC----CCCCCCCHHHHHHHHHhCCCCCeEEEECCCC-----------------C-----HHHHHH
Confidence 354434444443 5556678888877765 2 55665422111 1 444555
Q ss_pred HHHcCCCEEEEeeeCC
Q 022892 229 AIAVGVDGVFMEVHDD 244 (290)
Q Consensus 229 Ava~GA~G~~IEkH~t 244 (290)
+..+ |+|++|=..++
T Consensus 226 ~~~~-a~avLVGealm 240 (452)
T 1pii_A 226 LSHF-ANGFLIGSALM 240 (452)
T ss_dssp HTTT-CSEEEECHHHH
T ss_pred HHHh-CCEEEEcHHHc
Confidence 6677 99999988874
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=89.50 E-value=1.2 Score=37.53 Aligned_cols=80 Identities=11% Similarity=-0.060 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHh-c-CCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAK-T-GKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~-~-~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
.+.++|++.|++++..++++.++....+ .+|++|+-........+++++.+ . +.||+..-|.. .+++.. ++
T Consensus 95 ~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~~~l~~~~~~~pvia~GGI~--~~~~~~---~~- 168 (205)
T 1wa3_A 95 EISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVN--LDNVCE---WF- 168 (205)
T ss_dssp HHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHHHHHHTTCTTCEEEEBSSCC--TTTHHH---HH-
T ss_pred HHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHhCCCCcEEEcCCCC--HHHHHH---HH-
Confidence 4667788899999999998888877766 69999976544445677777755 4 68988888875 343333 33
Q ss_pred HcCCCcEEE
Q 022892 155 LAGNPNVMV 163 (290)
Q Consensus 155 ~~Gn~~i~L 163 (290)
..|..-+.+
T Consensus 169 ~~Ga~~v~v 177 (205)
T 1wa3_A 169 KAGVLAVGV 177 (205)
T ss_dssp HHTCSCEEE
T ss_pred HCCCCEEEE
Confidence 356544443
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=89.40 E-value=0.82 Score=41.93 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
+.|++..++-+..++-++||.-++..+++ .++.+.+++..+.+ ..|.| .++.- |++|+...++.|.+
T Consensus 9 ~~lr~l~~~~~~i~~~~a~D~~sA~~~~~aG~~ai~vsg~~~a~--------~lG~p---D~~~v-t~~em~~~~~~I~~ 76 (295)
T 1s2w_A 9 TQLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSA--------QLGVR---DSNEA-SWTQVVEVLEFMSD 76 (295)
T ss_dssp HHHHHHHHSSSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHH--------TC-------------CHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeChHHHHH--------hCCCC---CCCCC-CHHHHHHHHHHHHh
Confidence 34666666667888889999999999988 69999998765442 12444 22333 78888877776653
Q ss_pred cCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 156 AGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 156 ~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
. .++||++|-+.+- |..+.+...++.-+..||.
T Consensus 77 ~-------------------------------~~~PviaD~d~Gy----------------g~~~~v~~~v~~l~~aGaa 109 (295)
T 1s2w_A 77 A-------------------------------SDVPILLDADTGY----------------GNFNNARRLVRKLEDRGVA 109 (295)
T ss_dssp T-------------------------------CSSCEEEECCSSC----------------SSHHHHHHHHHHHHHTTCC
T ss_pred c-------------------------------CCCCEEecCCCCC----------------CCHHHHHHHHHHHHHcCCc
Confidence 2 2478999988763 2222233344445678999
Q ss_pred EEEEeeeCC
Q 022892 236 GVFMEVHDD 244 (290)
Q Consensus 236 G~~IEkH~t 244 (290)
|+-||--..
T Consensus 110 gv~iED~~~ 118 (295)
T 1s2w_A 110 GACLEDKLF 118 (295)
T ss_dssp EEEEECBCC
T ss_pred EEEECCCCC
Confidence 999997643
|
| >4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=0.86 Score=45.15 Aligned_cols=121 Identities=14% Similarity=0.112 Sum_probs=85.7
Q ss_pred HHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC---------CcEEEeecCcccHHHHhh---h
Q 022892 39 IKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD---------IPIVTDVHETVQCEEVGK---V 106 (290)
Q Consensus 39 L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G---------i~~~s~~~d~~~~~~l~~---~ 106 (290)
+++.+.+.|+|+|...+-.. .+.+..++++..+.| +++++-+-.++.++-+++ .
T Consensus 221 ~l~fa~~~~vD~ialSFVr~--------------~~Dv~~~r~~l~~~g~~~~~~~~~i~IiaKIE~~~av~NldeIi~~ 286 (526)
T 4drs_A 221 IVDFALKYNLDFIALSFVQN--------------GADVQLCRQIISENTQYSNGIPSSIKIISKIENLEGVINFDSICSE 286 (526)
T ss_dssp HHHTTTTTTCSEEEETTCCS--------------HHHHHHHHHHHHTCCTTTTTCCCCCEEEEEECSHHHHHTHHHHHHH
T ss_pred HHHHHHHhccCeeeecccCc--------------hhhHHHHHHHHHhhCcccccccccceeeeehhccHHHHHHHHHHhh
Confidence 45667778999987653221 478999999998876 789999999998876666 5
Q ss_pred cceecccCCcc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeec
Q 022892 107 ADIIQIPAFLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 107 ~d~~kIgs~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
.|.+-|+=+|+ -|-.+++.+-..+||||+.|-|- .|=.|+-+.+..+. .|-+-++|---+
T Consensus 287 sDgIMVARGDLgvEip~e~vp~~QK~II~~c~~~gKPVI~ATQmLeSMi~np~PTRAEvsDVAnAV~-DGaDavMLSgET 365 (526)
T 4drs_A 287 SDGIMVARGDLGMEIPPEKIFVAQKCMISKCNVAGKPVVTATQMLESMIKSNRPTRAEMTDVANAVL-DGSDCVMLSGET 365 (526)
T ss_dssp SSEEEEECTTHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESCTTGGGGSSSSCCHHHHHHHHHHHH-HTCSEEEESHHH
T ss_pred ccEEEEECCcccccCCHHHHHHHHHHHHHHHHHcCCeEEEhhhhhHHHhhCCCCCCchHHHHHHHHH-hCCceEEEcchh
Confidence 88888888776 34456677778899999988764 35577777777665 366555553222
Q ss_pred CCCCCCC
Q 022892 168 TMFGYND 174 (290)
Q Consensus 168 s~~~y~~ 174 (290)
..-.||-
T Consensus 366 A~G~yPv 372 (526)
T 4drs_A 366 ANGAFPF 372 (526)
T ss_dssp HSCSCHH
T ss_pred hcccCHH
Confidence 2223764
|
| >3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* | Back alignment and structure |
|---|
Probab=89.37 E-value=7.3 Score=36.46 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-eecCcc--------
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-DVHETV-------- 98 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-~~~d~~-------- 98 (290)
+.+..++.+.+-.+..+++|...|.-.+ . .++| .....|+++.++.||-+++ |-|..+
T Consensus 77 ~~~~~~~~~~~~l~~~k~~Gg~tIVd~T-------~----~g~G--Rd~~~l~~is~~tGv~IV~~TG~y~~~~~~p~~~ 143 (360)
T 3tn4_A 77 REDESLRVAVEAAEKMKRHGIQTVVDPT-------P----NDCG--RNPAFLRRVAEETGLNIICATGYYYEGEGAPPYF 143 (360)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEECC-------C----TTTT--CCHHHHHHHHHHHCCEEEEEECCCCGGGSCTHHH
T ss_pred hhhhHHHHHHHHHHHHHhcCCCeEEECC-------C----CCcC--cCHHHHHHHHHHcCCCEEEeCccccCcccCCccc
Confidence 3444455544444445667877665321 1 1233 4567788888888988765 544432
Q ss_pred --------cHHHHhh--------hc-------ceecccCC--ccCCH--HHHHH----HHhcCCeEEEeCCCCCCHHHHH
Q 022892 99 --------QCEEVGK--------VA-------DIIQIPAF--LCRQT--DLLVA----AAKTGKIINIKKGQFCASSVMV 147 (290)
Q Consensus 99 --------~~~~l~~--------~~-------d~~kIgs~--~~~n~--~lL~~----~a~~~~PVilstG~~~tl~e~~ 147 (290)
+++.+.+ .+ -++|++.. .++.. ..+++ ...+|+||++-++-+ +. ..
T Consensus 144 ~~~~~~~~~~e~l~~~~i~Ei~~Gi~~tgikaG~I~~~~~~~~~t~~E~k~frA~a~aa~etG~Pv~iHt~~~-~~--~~ 220 (360)
T 3tn4_A 144 QFRRLLGTAEDDIYDMFMAELTEGIADTGIKAGVIKLASSKGRITEYEKMFFRAAARAQKETGAVIITHTQEG-TM--GP 220 (360)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTCSTTSCCCCSEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCEEEEECSTT-CC--HH
T ss_pred chhhhcccCHHHHHHHHHHHHHhccccCCCcceEEEEEccCCCCCHHHHHHHHHHHHHHHHhCCcEEEEcCcc-cC--CH
Confidence 1232222 11 14454433 23322 23444 346899999999876 32 12
Q ss_pred HHHHHHHHcCCC--cEEEEe-ecCCCCCCCCCCCchhHHHHHhcCCCEEEe
Q 022892 148 NSAEKVRLAGNP--NVMVCE-RGTMFGYNDLIVDPRNLEWMREANCPVVAD 195 (290)
Q Consensus 148 ~Ave~i~~~Gn~--~i~L~~-~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D 195 (290)
..++++++.|-+ +++++| |-+. |+.....+-+.|+-|.||
T Consensus 221 e~l~iL~eeG~~~~~vvi~H~~~~~--------d~~~~~~~l~~G~yl~fD 263 (360)
T 3tn4_A 221 EQAAYLLEHGADPKKIVIGHMCDNT--------DPDYHRKTLAYGVYIAFD 263 (360)
T ss_dssp HHHHHHHHTTCCGGGEEECCGGGCC--------CHHHHHHHHTTTCEEEEC
T ss_pred HHHHHHHHcCCCCCceEEEcCCCCC--------CHHHHHHHHHcCCEEEEc
Confidence 334567777753 789999 5431 333333333468888886
|
| >3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=89.33 E-value=1.3 Score=42.97 Aligned_cols=95 Identities=15% Similarity=0.051 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh---cc-eecccCCc--cCCHHHHHHHHh--cCCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV---AD-IIQIPAFL--CRQTDLLVAAAK--TGKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~---~d-~~kIgs~~--~~n~~lL~~~a~--~~~PVilstG~~~tl~ 144 (290)
++-++.+++.+++++|.++=+||++++.+-...+ +. -++|-+.+ ++|...++.+-. .---|++|-++.+++.
T Consensus 284 ~Elid~y~~lle~ypIv~IEDPl~~dD~eg~a~Lt~~lg~~iqIvGDDl~vTn~~~i~~~Ie~~a~n~IlIKvnQIGgIT 363 (452)
T 3otr_A 284 EKLKEVYEGWLKKYPIISVEDPFDQDDFASFSAFTKDVGEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVNQIGSVT 363 (452)
T ss_dssp HHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCCHH
T ss_pred HHHHHHHHHHHhhhCceEEecCCChhhHHHHHHHHHhhCCCeEEEeCccccCCHHHHHHHHhcCCCCEEEeeccccccHH
Confidence 3556677888999999999999999998876653 22 24444444 478776666533 2336888988888999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecC
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
|+.++++..++.| -.+++-||..
T Consensus 364 Ealka~~lA~~~G-~~vmvshrSG 386 (452)
T 3otr_A 364 EAIEACLLAQKSG-WGVQVSHRSG 386 (452)
T ss_dssp HHHHHHHHHHHTT-CEEEEECCSS
T ss_pred HHHHHHHHHHHcC-CeEEEeCCCC
Confidence 9999998887776 3567777743
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.27 E-value=1.5 Score=39.73 Aligned_cols=72 Identities=19% Similarity=0.110 Sum_probs=57.6
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
..++++++|++ . .+.+.+ .+ .+|++-|..-.-...++..++.+.||+|++.+.++.+++|....++..++.
T Consensus 41 ~~~~~~~~~~~-~------~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~ 113 (331)
T 4hkt_A 41 AEAIAGAYGCE-V------RTIDAIEAAADIDAVVICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDT 113 (331)
T ss_dssp HHHHHHHTTCE-E------CCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC-c------CCHHHHhcCCCCCEEEEeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHc
Confidence 55667788987 2 234444 33 699999999999999999999999999999999999999998888766655
Q ss_pred C
Q 022892 157 G 157 (290)
Q Consensus 157 G 157 (290)
|
T Consensus 114 g 114 (331)
T 4hkt_A 114 K 114 (331)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=89.18 E-value=3.4 Score=37.27 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=55.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
++++-||+|.++. |...+++.+++..+ +|+|++.-. .|+.| ++.-+.-+...+++++..++|++-=
T Consensus 68 ~gr~pviaGvg~~-~t~~ai~la~~a~~----~Gadavlv~--------~P~y~-~~~~~~l~~~f~~ia~a~~lPiilY 133 (291)
T 3tak_A 68 NKRIPIIAGTGAN-STREAIELTKAAKD----LGADAALLV--------TPYYN-KPTQEGLYQHYKAIAEAVELPLILY 133 (291)
T ss_dssp TTSSCEEEECCCS-SHHHHHHHHHHHHH----HTCSEEEEE--------CCCSS-CCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCeEEEeCCCC-CHHHHHHHHHHHHh----cCCCEEEEc--------CCCCC-CCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3567899999874 66667776666555 699987653 12212 2221233556778888899999842
Q ss_pred --------ecCcccHHHHhh--hcceecccCCccCCH
Q 022892 94 --------VHETVQCEEVGK--VADIIQIPAFLCRQT 120 (290)
Q Consensus 94 --------~~d~~~~~~l~~--~~d~~kIgs~~~~n~ 120 (290)
.++++.+..|.+ .+-.+|-.+.++.++
T Consensus 134 n~P~~tg~~l~~~~~~~La~~pnivgiK~ssgd~~~~ 170 (291)
T 3tak_A 134 NVPGRTGVDLSNDTAVRLAEIPNIVGIKDATGDVPRG 170 (291)
T ss_dssp ECHHHHSCCCCHHHHHHHTTSTTEEEEEECSCCHHHH
T ss_pred ecccccCCCCCHHHHHHHHcCCCEEEEEeCCCCHHHH
Confidence 233344444444 244566666665544
|
| >3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A* | Back alignment and structure |
|---|
Probab=89.17 E-value=1.4 Score=44.39 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=81.9
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC--CcEEEeecCcccHHHHhh---hcceecccCC
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD--IPIVTDVHETVQCEEVGK---VADIIQIPAF 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G--i~~~s~~~d~~~~~~l~~---~~d~~kIgs~ 115 (290)
+.+.+.|+|.|...+-.. .+.+.+++++..+.| +.+++-+-.++.++-+++ ..|-+-|+-+
T Consensus 200 ~f~~~~~vD~Ia~SFVr~--------------a~Dv~~~r~~l~~~~~~i~IiaKIE~~eav~nldeIl~~sDGImVARG 265 (606)
T 3t05_A 200 RFGIKENVDFIAASFVRR--------------PSDVLEIREILEEQKANISVFPKIENQEGIDNIEEILEVSDGLMVARG 265 (606)
T ss_dssp HHHHHTTCSEEEETTCCS--------------HHHHHHHHHHHHHTTCCCEEEECCCSHHHHHTHHHHHHHCSCEEEEHH
T ss_pred HHHHHcCCCEEEECCCCC--------------HHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHhHHHHHHhCCEEEEccc
Confidence 445567999987753331 477889999987765 899999998888766655 5888888777
Q ss_pred cc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 116 LC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 116 ~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
|+ -|-.+++.+-+.+|||++-|-|- .|=.|+-+.+..+. .|-+-++|---+..-.||.
T Consensus 266 DLgvei~~e~vp~~Qk~ii~~~~~~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAv~-dGaDavMLSgETA~G~yPv 342 (606)
T 3t05_A 266 DMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIY-DGTDAVMLSGETAAGLYPE 342 (606)
T ss_dssp HHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSSSGGGTTCSSCCHHHHHHHHHHHH-HTCSEEEECHHHHSCSCSH
T ss_pred cccCcCCHHHHHHHHHHHHHHHHHcCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHH-cCCCEEEecccccCCCCHH
Confidence 65 34567777888999999965552 26678877777765 3565555532222223764
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=89.17 E-value=1.8 Score=39.26 Aligned_cols=74 Identities=20% Similarity=0.181 Sum_probs=58.1
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHHh-h-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEVG-K-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l~-~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.+++++++|++-. ..+.+.+. + .+|++-|....-...++..++.+.||+|++.+.++.+++|....++..++.
T Consensus 43 ~~~~~~~~~~~~~-----~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~ 117 (330)
T 3e9m_A 43 AQKMAKELAIPVA-----YGSYEELCKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQ 117 (330)
T ss_dssp HHHHHHHTTCCCC-----BSSHHHHHHCTTCSEEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCce-----eCCHHHHhcCCCCCEEEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 4566777888521 13444443 3 699999999999999999999999999999999999999999888876665
Q ss_pred C
Q 022892 157 G 157 (290)
Q Consensus 157 G 157 (290)
|
T Consensus 118 g 118 (330)
T 3e9m_A 118 G 118 (330)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=89.16 E-value=11 Score=35.26 Aligned_cols=176 Identities=10% Similarity=0.061 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE-eecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT-DVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s-~~~d~~~~~~l~~ 105 (290)
+.+.-+++|++|.++ |++.|=-.++. .+ +..++.+++.++.. +..+.+ ..-....++...+
T Consensus 32 ~~~~Kl~ia~~L~~~----Gv~~IE~g~p~----~~---------~~d~e~v~~i~~~~~~~~i~~l~r~~~~di~~a~~ 94 (370)
T 3rmj_A 32 TKEEKIRVARQLEKL----GVDIIEAGFAA----AS---------PGDFEAVNAIAKTITKSTVCSLSRAIERDIRQAGE 94 (370)
T ss_dssp CHHHHHHHHHHHHHH----TCSEEEEEEGG----GC---------HHHHHHHHHHHTTCSSSEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc----CCCEEEEeCCC----CC---------HHHHHHHHHHHHhCCCCeEEEEecCCHHHHHHHHH
Confidence 678899999999885 99876544321 11 23444444444322 222221 1123344443322
Q ss_pred -----hccee--cccCCccCC-----------HH----HHHHHHhcCCeEEEeC--CCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 106 -----VADII--QIPAFLCRQ-----------TD----LLVAAAKTGKIINIKK--GQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 106 -----~~d~~--kIgs~~~~n-----------~~----lL~~~a~~~~PVilst--G~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
.++.+ -+++.+..+ .+ .++++-..+..|.++. +.-.+++.+.+.++.+...|...|
T Consensus 95 al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~Ga~~i 174 (370)
T 3rmj_A 95 AVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTI 174 (370)
T ss_dssp HHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHHTCCEE
T ss_pred HHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHcCCCEE
Confidence 12222 222222211 22 3344445677777765 223388889999998999999888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cC----CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCE
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-AN----CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 236 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~----~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G 236 (290)
.|+..... ..|.. + ..-+..+++ +. +|+.+ +.|-. +.+...-+.+|+.+||+
T Consensus 175 ~l~DT~G~-~~P~~-~-~~lv~~l~~~~~~~~~~~l~~-H~Hnd------------------~GlAvAN~laAv~aGa~- 231 (370)
T 3rmj_A 175 NIPDTVGY-SIPYK-T-EEFFRELIAKTPNGGKVVWSA-HCHND------------------LGLAVANSLAALKGGAR- 231 (370)
T ss_dssp EEECSSSC-CCHHH-H-HHHHHHHHHHSTTGGGSEEEE-ECBCT------------------TSCHHHHHHHHHHTTCC-
T ss_pred EecCccCC-cCHHH-H-HHHHHHHHHhCCCcCceEEEE-EeCCC------------------CChHHHHHHHHHHhCCC-
Confidence 88886652 12221 1 134566776 53 78988 77753 22335567789999998
Q ss_pred EEEeeeCC
Q 022892 237 VFMEVHDD 244 (290)
Q Consensus 237 ~~IEkH~t 244 (290)
.++.-+.
T Consensus 232 -~vd~tv~ 238 (370)
T 3rmj_A 232 -QVECTVN 238 (370)
T ss_dssp -EEEEBGG
T ss_pred -EEEEecc
Confidence 7777553
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=89.14 E-value=8 Score=38.33 Aligned_cols=116 Identities=15% Similarity=0.101 Sum_probs=75.5
Q ss_pred hcceeccc--CCccCCH-HHHHHHHhcCCeE--EEeC--CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC
Q 022892 106 VADIIQIP--AFLCRQT-DLLVAAAKTGKII--NIKK--GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD 178 (290)
Q Consensus 106 ~~d~~kIg--s~~~~n~-~lL~~~a~~~~PV--ilst--G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d 178 (290)
.++++-|- ..++.|. +.++++-+.|+.| .++. |.-.+++.+.+.++.+...|...|.|+.-... ..|.. +
T Consensus 130 Gvd~vrIf~s~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~-~~P~~-v- 206 (539)
T 1rqb_A 130 GMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADSIALKDMAAL-LKPQP-A- 206 (539)
T ss_dssp TCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTCSEEEEEETTCC-CCHHH-H-
T ss_pred CCCEEEEEEehhHHHHHHHHHHHHHHCCCeEEEEEEeeeCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC-cCHHH-H-
Confidence 45655443 3334444 4556666788877 4643 44448999999999999999887777776542 12221 1
Q ss_pred chhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCC
Q 022892 179 PRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 179 L~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~ 245 (290)
..-+..+++ + ++||++ +.|-. +.+...-+.+|+.+||+ .|+.-+.+
T Consensus 207 ~~lv~~l~~~~p~~i~I~~-H~Hnd------------------~GlAvAN~laAveAGa~--~VD~ti~g 255 (539)
T 1rqb_A 207 YDIIKAIKDTYGQKTQINL-HCHST------------------TGVTEVSLMKAIEAGVD--VVDTAISS 255 (539)
T ss_dssp HHHHHHHHHHHCTTCCEEE-EEBCT------------------TSCHHHHHHHHHHTTCS--EEEEBCGG
T ss_pred HHHHHHHHHhcCCCceEEE-EeCCC------------------CChHHHHHHHHHHhCCC--EEEEeccc
Confidence 245666777 6 799999 78863 22335567789999998 88876654
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=89.12 E-value=1.4 Score=39.73 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=54.9
Q ss_pred HHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 81 KVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 81 ~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
++++++|+++ + .+.+.+.+.+|++-|....-...++...+.+.||+|++.+.++.+++|....++..++.|
T Consensus 46 ~~~~~~g~~~----~--~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g 116 (319)
T 1tlt_A 46 PICESWRIPY----A--DSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKK 116 (319)
T ss_dssp HHHHHHTCCB----C--SSHHHHHTTCSEEEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCc----c--CcHHHhhcCCCEEEEeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 4456778872 2 233445457999999999888888888888999999999998889999888877666554
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=89.12 E-value=3.5 Score=35.91 Aligned_cols=166 Identities=12% Similarity=0.078 Sum_probs=87.7
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH-hcCCcEEEeecCcc-cHHHHhh-hcceecccCC--
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI-AYDIPIVTDVHETV-QCEEVGK-VADIIQIPAF-- 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~-~~Gi~~~s~~~d~~-~~~~l~~-~~d~~kIgs~-- 115 (290)
+.+.+.|++.+-..--+ ...-|. -.++ .+.++.+++.++ .+++.+++ .|++ .++.+.+ .+|.+-++..
T Consensus 24 ~~~~~~Gad~ihldi~D--G~fvp~--~~~g-~~~v~~lr~~~~~~~~vhlmv--~dp~~~i~~~~~aGadgv~vh~e~~ 96 (230)
T 1tqj_A 24 KAVDEAGADWIHVDVMD--GRFVPN--ITIG-PLIVDAIRPLTKKTLDVHLMI--VEPEKYVEDFAKAGADIISVHVEHN 96 (230)
T ss_dssp HHHHHTTCSEEEEEEEB--SSSSSC--BCBC-HHHHHHHGGGCCSEEEEEEES--SSGGGTHHHHHHHTCSEEEEECSTT
T ss_pred HHHHHcCCCEEEEEEEe--cCCCcc--hhhh-HHHHHHHHhhcCCcEEEEEEc--cCHHHHHHHHHHcCCCEEEECcccc
Confidence 33445799886333221 111111 1123 345555655552 44444555 4542 3555555 6899988866
Q ss_pred ccC-CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC---CCCchhHHHHHh-c--
Q 022892 116 LCR-QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL---IVDPRNLEWMRE-A-- 188 (290)
Q Consensus 116 ~~~-n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~---~~dL~~i~~lk~-~-- 188 (290)
... -...++.+-+.|+-++++..+. |+.|...++ . .+-+ .+++-+.. .++... ..-+..+..+|+ .
T Consensus 97 ~~~~~~~~~~~i~~~g~~~gv~~~p~-t~~e~~~~~---~-~~~D-~v~~msv~-pg~ggq~~~~~~~~~i~~lr~~~~~ 169 (230)
T 1tqj_A 97 ASPHLHRTLCQIRELGKKAGAVLNPS-TPLDFLEYV---L-PVCD-LILIMSVN-PGFGGQSFIPEVLPKIRALRQMCDE 169 (230)
T ss_dssp TCTTHHHHHHHHHHTTCEEEEEECTT-CCGGGGTTT---G-GGCS-EEEEESSC-C----CCCCGGGHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHcCCcEEEEEeCC-CcHHHHHHH---H-hcCC-EEEEEEec-cccCCccCcHHHHHHHHHHHHHHHh
Confidence 332 3356777778899999999777 766654432 2 2333 34332221 111111 123455666666 4
Q ss_pred ---CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 189 ---NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 189 ---~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
++||.+|--=+ ..-+.....+||||+++=+-+
T Consensus 170 ~~~~~~I~v~GGI~-----------------------~~~~~~~~~aGad~vvvGSai 204 (230)
T 1tqj_A 170 RGLDPWIEVDGGLK-----------------------PNNTWQVLEAGANAIVAGSAV 204 (230)
T ss_dssp HTCCCEEEEESSCC-----------------------TTTTHHHHHHTCCEEEESHHH
T ss_pred cCCCCcEEEECCcC-----------------------HHHHHHHHHcCCCEEEECHHH
Confidence 78888762211 111334466799999998776
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=89.06 E-value=1.5 Score=40.01 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHh-h-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVG-K-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~-~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..++.++++|++.. .+.+.+. + .+|++-|..-.-.+.++..++.+.||+|++.+.++.+++|....++..++
T Consensus 42 ~~~~~~~~~g~~~~------~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (354)
T 3db2_A 42 KREKFGKRYNCAGD------ATMEALLAREDVEMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKE 115 (354)
T ss_dssp HHHHHHHHHTCCCC------SSHHHHHHCSSCCEEEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCc------CCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHH
Confidence 34556677888752 3444444 3 69999999999999999999999999999999999999999888876665
Q ss_pred cC
Q 022892 156 AG 157 (290)
Q Consensus 156 ~G 157 (290)
.|
T Consensus 116 ~~ 117 (354)
T 3db2_A 116 TG 117 (354)
T ss_dssp HC
T ss_pred cC
Confidence 54
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=89.02 E-value=11 Score=32.83 Aligned_cols=139 Identities=10% Similarity=0.020 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhcCCcEEEe--ecCcc-cHHHHhh-hcceecccCCccCCH-HHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTD--VHETV-QCEEVGK-VADIIQIPAFLCRQT-DLLVAAAKTGKIINIKKGQFCASSVMVN 148 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~--~~d~~-~~~~l~~-~~d~~kIgs~~~~n~-~lL~~~a~~~~PVilstG~~~tl~e~~~ 148 (290)
.-++.+++.. ...+++-.- +.++. .++.+.+ .+|++.+......+. ..++++-+.|+-+++..... |..|...
T Consensus 52 ~~v~~ir~~~-~~~~~~dvhLmv~~p~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~-t~~e~l~ 129 (228)
T 3ovp_A 52 PVVESLRKQL-GQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPG-TSVEYLA 129 (228)
T ss_dssp HHHHHHHHHH-CSSSCEEEEEECSCGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTT-SCGGGTG
T ss_pred HHHHHHHHhh-CCCCcEEEEEEeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCC-CCHHHHH
Confidence 4455555553 023444332 23332 3555555 699999988665543 46677778898888888877 4433322
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCC---CCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHH
Q 022892 149 SAEKVRLAGNPNVMVCERGTMFGYNDLI---VDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIP 223 (290)
Q Consensus 149 Ave~i~~~Gn~~i~L~~~gs~~~y~~~~---~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~ 223 (290)
.+.. ..+.+++.+. .+++.-.. -.+.-+..+|+ . +++|.+|..=+ +
T Consensus 130 ---~~l~--~~D~Vl~msv-~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~-----------------------~ 180 (228)
T 3ovp_A 130 ---PWAN--QIDMALVMTV-EPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVG-----------------------P 180 (228)
T ss_dssp ---GGGG--GCSEEEEESS-CTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESSCS-----------------------T
T ss_pred ---HHhc--cCCeEEEeee-cCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCCcC-----------------------H
Confidence 2222 2345555443 22332221 12445677776 3 57887763221 2
Q ss_pred HHHHHHHHcCCCEEEEeeeC
Q 022892 224 CIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 224 ~~a~aAva~GA~G~~IEkH~ 243 (290)
..+..++.+|||++|+=+-+
T Consensus 181 ~t~~~~~~aGAd~~VvGsaI 200 (228)
T 3ovp_A 181 DTVHKCAEAGANMIVSGSAI 200 (228)
T ss_dssp TTHHHHHHHTCCEEEESHHH
T ss_pred HHHHHHHHcCCCEEEEeHHH
Confidence 33556788899999888765
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=89.01 E-value=7.4 Score=34.56 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=67.0
Q ss_pred HHHHHHHhc---CCeEE-EeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEe
Q 022892 121 DLLVAAAKT---GKIIN-IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVAD 195 (290)
Q Consensus 121 ~lL~~~a~~---~~PVi-lstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D 195 (290)
.+++.+-+. ++.++ +.+. +.++++.+. ..|..-| +..+.-++......+...+..+++ .++||++.
T Consensus 114 ~~~~~a~~~~~~g~~vi~~~~~---~~~~a~~~~----~~gad~v--~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~ 184 (264)
T 1xm3_A 114 ETLKASEQLLEEGFIVLPYTSD---DVVLARKLE----ELGVHAI--MPGASPIGSGQGILNPLNLSFIIEQAKVPVIVD 184 (264)
T ss_dssp HHHHHHHHHHHTTCCEEEEECS---CHHHHHHHH----HHTCSCB--EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEE
T ss_pred HHHHHHHHHHCCCeEEEEEcCC---CHHHHHHHH----HhCCCEE--EECCcccCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 566666666 87777 6654 566655543 3466545 333332222222224567777777 78999874
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 022892 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 196 ~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~l 275 (290)
.-=+ . +.-+..+.++||+|+++=+.+.-. .| ..+.+++|++.+++...+.
T Consensus 185 gGI~-----------------t-----~eda~~~~~~GAdgViVGSAi~~a---~d-----p~~~~~~l~~~v~~~~~~~ 234 (264)
T 1xm3_A 185 AGIG-----------------S-----PKDAAYAMELGADGVLLNTAVSGA---DD-----PVKMARAMKLAVEAGRLSY 234 (264)
T ss_dssp SCCC-----------------S-----HHHHHHHHHTTCSEEEESHHHHTS---SS-----HHHHHHHHHHHHHHHHHHH
T ss_pred eCCC-----------------C-----HHHHHHHHHcCCCEEEEcHHHhCC---CC-----HHHHHHHHHHHHHHHHHHH
Confidence 2111 1 344566788999999998876311 11 2245677777666655443
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=89.00 E-value=2.3 Score=39.01 Aligned_cols=92 Identities=13% Similarity=0.039 Sum_probs=60.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||||.++ |...+++.+++..+ +|+|++.-. .|+ |.++. +++ +...+++++..++|++-
T Consensus 79 ~grvpViaGvg~--st~~ai~la~~A~~----~Gadavlv~--------~P~-y~~~s-~~~l~~~f~~va~a~~lPiil 142 (314)
T 3d0c_A 79 NGRATVVAGIGY--SVDTAIELGKSAID----SGADCVMIH--------QPV-HPYIT-DAGAVEYYRNIIEALDAPSII 142 (314)
T ss_dssp TTSSEEEEEECS--SHHHHHHHHHHHHH----TTCSEEEEC--------CCC-CSCCC-HHHHHHHHHHHHHHSSSCEEE
T ss_pred CCCCeEEecCCc--CHHHHHHHHHHHHH----cCCCEEEEC--------CCC-CCCCC-HHHHHHHHHHHHHhCCCCEEE
Confidence 457889999997 77777777666554 799987653 122 22223 344 55677888999999875
Q ss_pred e----ecCcccHHHHhh--hcceecccCCccCCHH
Q 022892 93 D----VHETVQCEEVGK--VADIIQIPAFLCRQTD 121 (290)
Q Consensus 93 ~----~~d~~~~~~l~~--~~d~~kIgs~~~~n~~ 121 (290)
= +++++.+..|.+ .+-.+|-.+.++.+..
T Consensus 143 Yn~tg~l~~~~~~~La~~pnIvgiKdssgd~~~~~ 177 (314)
T 3d0c_A 143 YFKDAHLSDDVIKELAPLDKLVGIKYAINDIQRVT 177 (314)
T ss_dssp EECCTTSCTHHHHHHTTCTTEEEEEECCCCHHHHH
T ss_pred EeCCCCcCHHHHHHHHcCCCEEEEEeCCCCHHHHH
Confidence 1 255666666655 3557788888775543
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=88.75 E-value=13 Score=33.31 Aligned_cols=217 Identities=13% Similarity=0.118 Sum_probs=112.0
Q ss_pred HHhhhcCCCCeEEEE--ccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCccc-------------CCCCC
Q 022892 7 LFNQLKAAEPFFLLA--GPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKS-------------FRGPG 71 (290)
Q Consensus 7 ~~~~i~~~~~~~iIA--gpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~-------------~~g~~ 71 (290)
.|......++..+|. -+|.. +.+..++.++.|.+ . +|+|-.+. |.+.|.. -.|..
T Consensus 6 ~f~~~~~~~~~~li~~i~~GdP-~~~~~~~~~~~l~~----~-aD~IElG~----PfsdP~adGp~Iq~a~~~Al~~G~~ 75 (271)
T 1ujp_A 6 AFAKARSEGRAALIPYLTAGFP-SREGFLQAVEEVLP----Y-ADLLEIGL----PYSDPLGDGPVIQRASELALRKGMS 75 (271)
T ss_dssp HHHHHHHTTBCEEEEEEETTSS-CHHHHHHHHHHHGG----G-CSSEEEEC----CCCC----CHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCceEEEEecCCCC-ChHHHHHHHHHHHh----c-CCEEEECC----CCCCcccccHHHHHHHHHHHHcCCC
Confidence 666654333322222 34443 66777777766665 5 88887764 2222221 01233
Q ss_pred hhHHHHHHHHHHHhcCCcEEEee-cCc-------ccHHHHhh-hcceecccCCcc-CCHHHHHHHHhcCCe-EEEeCCCC
Q 022892 72 MVEGLKILEKVKIAYDIPIVTDV-HET-------VQCEEVGK-VADIIQIPAFLC-RQTDLLVAAAKTGKI-INIKKGQF 140 (290)
Q Consensus 72 ~~~~l~~L~~~~~~~Gi~~~s~~-~d~-------~~~~~l~~-~~d~~kIgs~~~-~n~~lL~~~a~~~~P-VilstG~~ 140 (290)
+...++.++++.++..+|++--. +++ ..++.+.+ .+|.+-++.-.. +-..+.+.+-+.+.+ |.|-+..+
T Consensus 76 ~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s 155 (271)
T 1ujp_A 76 VQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTS 155 (271)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCC
Confidence 34457778888888889988832 221 11222333 578666654433 344566666667764 55555555
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeecC-CCCCCCC-CCC-chhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCC
Q 022892 141 CASSVMVNSAEKVRLAGNPNVMVCERGT-MFGYNDL-IVD-PRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASG 216 (290)
Q Consensus 141 ~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~~~y~~~-~~d-L~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~ 216 (290)
+.+.+...++ .+.. .+.+-..+ ..+.... .-+ ...+..+|+ .++||++-.- -+
T Consensus 156 -~~eri~~ia~----~~~g-fiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfG----------------I~- 212 (271)
T 1ujp_A 156 -TDARIATVVR----HATG-FVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFG----------------VS- 212 (271)
T ss_dssp -CHHHHHHHHT----TCCS-CEEEECC------------CCHHHHHHHHTTCCSCEEEESC----------------CC-
T ss_pred -CHHHHHHHHH----hCCC-CEEEEecCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcC----------------CC-
Confidence 6665554332 2332 33332111 0122111 112 356677888 7899876111 11
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 217 GLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 217 g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
. +..+.. + .||||+|+=+.++-.-. .+ +.++++++.+++.
T Consensus 213 t-----~e~a~~-~-~~ADgVIVGSAi~~~~~-~~-------~~~~~fv~~l~~~ 252 (271)
T 1ujp_A 213 G-----KATAAQ-A-AVADGVVVGSALVRALE-EG-------RSLAPLLQEIRQG 252 (271)
T ss_dssp S-----HHHHHH-H-TTSSEEEECHHHHHHHH-TT-------CCHHHHHHHHHHH
T ss_pred C-----HHHHHH-h-cCCCEEEEChHHhcccc-hH-------HHHHHHHHHHHHH
Confidence 1 344444 4 89999999877642110 01 3688888887654
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=88.68 E-value=3.8 Score=37.37 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=42.1
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCC-CCChhHHHHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFR-GPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~-g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
++++-||||.++. |...+++.|++.. ++|+|++.-. .|+.|+ .+.-+.-+...+++++..++|++-
T Consensus 81 ~gr~pviaGvg~~-~t~~ai~la~~A~----~~Gadavlv~--------~P~y~~~~~s~~~l~~~f~~ia~a~~lPiil 147 (307)
T 3s5o_A 81 PKNRLLLAGSGCE-STQATVEMTVSMA----QVGADAAMVV--------TPCYYRGRMSSAALIHHYTKVADLSPIPVVL 147 (307)
T ss_dssp CTTSEEEEECCCS-SHHHHHHHHHHHH----HTTCSEEEEE--------CCCTTGGGCCHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCcEEEecCCC-CHHHHHHHHHHHH----HcCCCEEEEc--------CCCcCCCCCCHHHHHHHHHHHHhhcCCCEEE
Confidence 4678899999874 6666666666554 4799997753 122122 122123455677888888999873
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=88.65 E-value=1.1 Score=41.06 Aligned_cols=73 Identities=10% Similarity=-0.025 Sum_probs=56.9
Q ss_pred HHHHHHhcCCcEEEeecCcccHHH-Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEE-VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~-l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
+.++++++|+.+.+ +.+. +.+ .+|++-|....-.+.++..++.+.||+|++.+.++.+++|....++..++.
T Consensus 52 ~~~~~~~~~~~~~~------~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~ 125 (354)
T 3q2i_A 52 LKAAVERTGARGHA------SLTDMLAQTDADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKA 125 (354)
T ss_dssp HHHHHHHHCCEEES------CHHHHHHHCCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCceeC------CHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 45566778875432 3344 443 699999999999999998999999999999999999999988887765554
Q ss_pred C
Q 022892 157 G 157 (290)
Q Consensus 157 G 157 (290)
|
T Consensus 126 g 126 (354)
T 3q2i_A 126 K 126 (354)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.40 E-value=1.6 Score=40.40 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..+++++++|.+-.. .+.+.+ ++ .+|++-|.+-.-.+.++..++.+.||+|++.+.++.+++|....++..++
T Consensus 63 ~a~~~a~~~~~~~~~-----~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 137 (361)
T 3u3x_A 63 LAAEFSAVYADARRI-----ATAEEILEDENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAE 137 (361)
T ss_dssp HHHHHHHHSSSCCEE-----SCHHHHHTCTTCCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCccc-----CCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 455677788843221 244444 43 59999999999999999999999999999999999999999988886655
Q ss_pred cC
Q 022892 156 AG 157 (290)
Q Consensus 156 ~G 157 (290)
.|
T Consensus 138 ~g 139 (361)
T 3u3x_A 138 TG 139 (361)
T ss_dssp TC
T ss_pred cC
Confidence 43
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=88.38 E-value=10 Score=34.62 Aligned_cols=64 Identities=16% Similarity=0.235 Sum_probs=41.4
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCC-CChhHH-HHHHHHHHHhcCCcEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRG-PGMVEG-LKILEKVKIAYDIPIV 91 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g-~~~~~~-l~~L~~~~~~~Gi~~~ 91 (290)
++++-||||.++. |...+++.+++..+ +|+|++.-. .|+.|.+ .. +++ +...+++++..++|++
T Consensus 78 ~grvpviaGvg~~-~t~~ai~la~~a~~----~Gadavlv~--------~P~y~~kp~~-~~~l~~~f~~ia~a~~lPii 143 (318)
T 3qfe_A 78 GPDFPIMAGVGAH-STRQVLEHINDASV----AGANYVLVL--------PPAYFGKATT-PPVIKSFFDDVSCQSPLPVV 143 (318)
T ss_dssp CTTSCEEEECCCS-SHHHHHHHHHHHHH----HTCSEEEEC--------CCCC---CCC-HHHHHHHHHHHHHHCSSCEE
T ss_pred CCCCcEEEeCCCC-CHHHHHHHHHHHHH----cCCCEEEEe--------CCcccCCCCC-HHHHHHHHHHHHhhCCCCEE
Confidence 4677899999874 66667777766655 699987653 2222322 22 344 5567788888888886
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=88.32 E-value=1.8 Score=39.44 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..+++++++|+..- ++ .+.+.+ .+ .+|++-|..-.-...++..++.+.||+|++.+.++.+++|....++..++
T Consensus 40 ~~~~~~~~~g~~~~--~~--~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~ 115 (344)
T 3mz0_A 40 AAQKVVEQYQLNAT--VY--PNDDSLLADENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIK 115 (344)
T ss_dssp HHHHHHHHTTCCCE--EE--SSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCe--ee--CCHHHHhcCCCCCEEEECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 45567788886211 11 234444 33 59999999999999999999999999999999999999999888887666
Q ss_pred cCC
Q 022892 156 AGN 158 (290)
Q Consensus 156 ~Gn 158 (290)
.|.
T Consensus 116 ~g~ 118 (344)
T 3mz0_A 116 VGK 118 (344)
T ss_dssp HSS
T ss_pred HCC
Confidence 553
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=88.24 E-value=14 Score=33.56 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=41.9
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcC--CcEE
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYD--IPIV 91 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~G--i~~~ 91 (290)
+++-||||.++. |...+++.|++..+ +|+|++.-. .|| |. .. +++ +.+.+++++..+ +|++
T Consensus 75 grvpViaGvg~~-~t~~ai~la~~A~~----~Gadavlv~--------~P~-~~-~s-~~~l~~~f~~va~a~~~~lPii 138 (313)
T 3dz1_A 75 KSMQVIVGVSAP-GFAAMRRLARLSMD----AGAAGVMIA--------PPP-SL-RT-DEQITTYFRQATEAIGDDVPWV 138 (313)
T ss_dssp TTSEEEEECCCS-SHHHHHHHHHHHHH----HTCSEEEEC--------CCT-TC-CS-HHHHHHHHHHHHHHHCTTSCEE
T ss_pred CCCcEEEecCCC-CHHHHHHHHHHHHH----cCCCEEEEC--------CCC-CC-CC-HHHHHHHHHHHHHhCCCCCcEE
Confidence 577899999874 66667777766555 699998753 223 32 22 344 556778888888 9987
Q ss_pred E
Q 022892 92 T 92 (290)
Q Consensus 92 s 92 (290)
-
T Consensus 139 l 139 (313)
T 3dz1_A 139 L 139 (313)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=88.17 E-value=4.1 Score=35.85 Aligned_cols=185 Identities=13% Similarity=0.108 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
-+++|++..+. |++-+...-.+.+ ..+- ..-+..+++.+++..+|+.. =+-+.++++.+-+ .++
T Consensus 33 P~~~a~~~~~~----gad~lhvvDld~a-------~~~~--~~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~Gad 99 (243)
T 4gj1_A 33 PLKKFKEYEKA----GAKELHLVDLTGA-------KDPS--KRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVK 99 (243)
T ss_dssp HHHHHHHHHHH----TCCEEEEEEHHHH-------HCGG--GCCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHC----CCCEEEEEecCcc-------cccc--hhHHHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCC
Confidence 46788887774 8887665444421 0000 13367788889999998876 5677788887666 799
Q ss_pred eecccCCccCCHHHHHHHHh-cCC-eEE--Ee----CC-----------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 109 IIQIPAFLCRQTDLLVAAAK-TGK-IIN--IK----KG-----------QFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~-~~~-PVi--ls----tG-----------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
-+-|++....|..|++++++ .+. -++ +. ++ +..++.||. +.+...|-..++ +.+..+
T Consensus 100 kVii~t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~---~~~~~~g~~eil-~t~Id~ 175 (243)
T 4gj1_A 100 RVVIGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVL---DFYSNKGLKHIL-CTDISK 175 (243)
T ss_dssp EEEECTTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHH---HHHHTTTCCEEE-EEETTC
T ss_pred EEEEccccccCCchHHHHHhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHH---HHHhhcCCcEEE-eeeecc
Confidence 99999999999999988764 221 122 11 11 112344443 345566765544 444332
Q ss_pred CCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 FGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
-+. ..=.|+..+..+.+ + ++||++- +|.+.. ..+. .+..+++|+++=+-+
T Consensus 176 DGt-~~G~d~~l~~~l~~~~~~ipvias--------------------GGv~~~-~Dl~--~l~~~~~gvivg~Al---- 227 (243)
T 4gj1_A 176 DGT-MQGVNVRLYKLIHEIFPNICIQAS--------------------GGVASL-KDLE--NLKGICSGVIVGKAL---- 227 (243)
T ss_dssp ------CCCHHHHHHHHHHCTTSEEEEE--------------------SCCCSH-HHHH--HTTTTCSEEEECHHH----
T ss_pred ccc-ccCCCHHHHHHHHHhcCCCCEEEE--------------------cCCCCH-HHHH--HHHccCchhehHHHH----
Confidence 111 01136677777876 4 7999871 122211 2222 234568898887766
Q ss_pred CCCCCCCCCChHHHHHHH
Q 022892 248 APVDGPTQWPLRNLEELL 265 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv 265 (290)
|.-.++.+|..+.+
T Consensus 228 ----~~g~i~l~ea~~~l 241 (243)
T 4gj1_A 228 ----LDGVFSVEEGIRCL 241 (243)
T ss_dssp ----HTTSSCHHHHHHHH
T ss_pred ----HCCCCCHHHHHHHh
Confidence 55667777765554
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=88.14 E-value=6.5 Score=34.82 Aligned_cols=162 Identities=17% Similarity=0.185 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecc
Q 022892 33 MRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQI 112 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kI 112 (290)
.+..+.|.+ +|+|++..+. . .|..++..++.++++.+ ..+|++-.+.....+ ...+|.+-|
T Consensus 23 ~~~~~~l~~----~GaD~ielG~-S----------~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i---~~G~dg~ii 83 (240)
T 1viz_A 23 DEQLEILCE----SGTDAVIIGG-S----------DGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAI---VPGFDLYFI 83 (240)
T ss_dssp HHHHHHHHT----SCCSEEEECC---------------CHHHHHHHHHHHTT-SSSCEEEECSCGGGC---CSCCSEEEE
T ss_pred HHHHHHHHH----cCCCEEEECC-C----------CCCCHHHHHHHHHHhhC-cCCCEEEecCccccc---cCCCCEEEE
Confidence 444555544 7999998864 1 23334557777777766 899999888874333 447888888
Q ss_pred cCCccC-CHHH-----HHHHHhcC------CeEE----EeCCCC-----------CCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 113 PAFLCR-QTDL-----LVAAAKTG------KIIN----IKKGQF-----------CASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 113 gs~~~~-n~~l-----L~~~a~~~------~PVi----lstG~~-----------~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
+.--.. +..+ .+++-+.+ .+|. |-+..+ .+++.+...++.=.-.+ ..++-+.
T Consensus 84 PdLp~ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~-~~~VYl~ 162 (240)
T 1viz_A 84 PSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQ-LPIFYLE 162 (240)
T ss_dssp EEETTBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTT-CSEEEEE
T ss_pred cccCcccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccC-CCEEEEe
Confidence 876554 4444 35555545 3444 433332 12444443332111111 2344444
Q ss_pred ecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 166 RGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
. + +- ..|...+..+++ . ++||.+- + |.+. +..+..+.. ||+|+++=+-+
T Consensus 163 s-~--G~---~~~~~~i~~i~~~~~~~Pv~vG----------------g----GI~t--~e~a~~~~~-gAd~VIVGSa~ 213 (240)
T 1viz_A 163 Y-S--GV---LGDIEAVKKTKAVLETSTLFYG----------------G----GIKD--AETAKQYAE-HADVIVVGNAV 213 (240)
T ss_dssp C-T--TS---CCCHHHHHHHHHTCSSSEEEEE----------------S----SCCS--HHHHHHHHT-TCSEEEECTHH
T ss_pred C-C--Cc---cChHHHHHHHHHhcCCCCEEEE----------------e----ccCC--HHHHHHHHh-CCCEEEEChHH
Confidence 3 2 22 236778888888 7 8998771 1 2111 445555556 99999997765
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=88.13 E-value=6 Score=35.67 Aligned_cols=64 Identities=6% Similarity=0.087 Sum_probs=41.6
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.++. |...+++.+++..+ +|+|++.-. .|+ |.++. +++ +...+++++..++|++-
T Consensus 71 ~grvpviaGvg~~-~t~~ai~la~~a~~----~Gadavlv~--------~P~-y~~~~-~~~l~~~f~~va~a~~lPiil 135 (293)
T 1f6k_A 71 KDQIALIAQVGSV-NLKEAVELGKYATE----LGYDCLSAV--------TPF-YYKFS-FPEIKHYYDTIIAETGSNMIV 135 (293)
T ss_dssp TTSSEEEEECCCS-CHHHHHHHHHHHHH----HTCSEEEEE--------CCC-SSCCC-HHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCCeEEEecCCC-CHHHHHHHHHHHHh----cCCCEEEEC--------CCC-CCCCC-HHHHHHHHHHHHHhCCCCEEE
Confidence 4578899999974 66666666665554 699987653 122 22222 344 55677788888888873
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.13 E-value=0.9 Score=44.34 Aligned_cols=118 Identities=13% Similarity=0.007 Sum_probs=68.3
Q ss_pred ccHHHHhh-hcceecccCCccCCH---HHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-----ee
Q 022892 98 VQCEEVGK-VADIIQIPAFLCRQT---DLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-----ER 166 (290)
Q Consensus 98 ~~~~~l~~-~~d~~kIgs~~~~n~---~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~-----~~ 166 (290)
+.++.+.+ .+|++.|.+..-... ++++++.+. +.||+..+.. |.++.+.+ ...|-+-|.+- +|
T Consensus 232 ~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~--t~e~a~~l----~~aGaD~I~vg~g~Gs~~ 305 (490)
T 4avf_A 232 ERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIA--TAEAAKAL----AEAGADAVKVGIGPGSIC 305 (490)
T ss_dssp HHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEEC--SHHHHHHH----HHTTCSEEEECSSCSTTC
T ss_pred HHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeC--cHHHHHHH----HHcCCCEEEECCCCCcCC
Confidence 34444444 588888876655444 566666553 6799995543 57766554 44676555541 33
Q ss_pred cCC--CCCCCCCCCchhHHHHHh----cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 167 GTM--FGYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 167 gs~--~~y~~~~~dL~~i~~lk~----~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
++. .++. .-++..+..+.+ +++||+.|..=. . ..-+..|.++||+|+++=
T Consensus 306 ~t~~~~g~g--~p~~~~l~~v~~~~~~~~iPVIa~GGI~--------------------~--~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 306 TTRIVAGVG--VPQISAIANVAAALEGTGVPLIADGGIR--------------------F--SGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHTCBC--CCHHHHHHHHHHHHTTTTCCEEEESCCC--------------------S--HHHHHHHHHHTCSEEEEC
T ss_pred CccccCCCC--ccHHHHHHHHHHHhccCCCcEEEeCCCC--------------------C--HHHHHHHHHcCCCeeeec
Confidence 321 0111 124556666554 479998752211 0 222345688899999998
Q ss_pred eeCCC
Q 022892 241 VHDDP 245 (290)
Q Consensus 241 kH~t~ 245 (290)
+-|.-
T Consensus 362 s~~~~ 366 (490)
T 4avf_A 362 SMFAG 366 (490)
T ss_dssp TTTTT
T ss_pred HHHhc
Confidence 77654
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=88.12 E-value=4.1 Score=40.30 Aligned_cols=188 Identities=15% Similarity=0.115 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCC-hhHHHHHHHHHHHhcCCcEEE--eecCccc--------
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPG-MVEGLKILEKVKIAYDIPIVT--DVHETVQ-------- 99 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~-~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~-------- 99 (290)
.-.++|++..+ .|++.+.+--.+. -+ .+.. -...++.+++++++..+|+.. -+-+.++
T Consensus 281 dp~~~A~~~~~----~Ga~~l~~~dl~~-~~------~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~ 349 (555)
T 1jvn_A 281 KPVQLAQKYYQ----QGADEVTFLNITS-FR------DCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPA 349 (555)
T ss_dssp HHHHHHHHHHH----TTCSEEEEEEEC----------CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECH
T ss_pred CHHHHHHHHHH----cCCCEEEEEeCCc-cc------cccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchH
Confidence 34667776665 5998776644431 01 1110 024578889999989999873 3444433
Q ss_pred ---HHHHhh-hcceecccCCccC-------------CHHHHHHHHhc-CC-eEEEeCCC---------------------
Q 022892 100 ---CEEVGK-VADIIQIPAFLCR-------------QTDLLVAAAKT-GK-IINIKKGQ--------------------- 139 (290)
Q Consensus 100 ---~~~l~~-~~d~~kIgs~~~~-------------n~~lL~~~a~~-~~-PVilstG~--------------------- 139 (290)
++.+.+ .+|.+.||+.... |.++++++++. |. -|+++-..
T Consensus 350 ~~~a~~~l~aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~ 429 (555)
T 1jvn_A 350 LEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYP 429 (555)
T ss_dssp HHHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSC
T ss_pred HHHHHHHHHcCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEcccccccccccccccccccccc
Confidence 555544 7999999998765 46888887653 41 23333221
Q ss_pred --CC-------------------CHHHHHHHHHHHHHcCCCcEEEEeecCCCC-CCCCCCCchhHHHHHh-cCCCEEEeC
Q 022892 140 --FC-------------------ASSVMVNSAEKVRLAGNPNVMVCERGTMFG-YNDLIVDPRNLEWMRE-ANCPVVADV 196 (290)
Q Consensus 140 --~~-------------------tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~-y~~~~~dL~~i~~lk~-~~~pV~~D~ 196 (290)
.+ +..|+. +.+...|-..| |+|..+.-+ +. -.|+..+..+++ .++||+...
T Consensus 430 ~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a---~~~~~~Ga~~i-l~t~~~~dG~~~--G~d~~li~~l~~~~~iPVIasG 503 (555)
T 1jvn_A 430 GPNGEKYCWYQCTIKGGRESRDLGVWELT---RACEALGAGEI-LLNCIDKDGSNS--GYDLELIEHVKDAVKIPVIASS 503 (555)
T ss_dssp CTTCCCEEEEEEEETTTTEEEEEEHHHHH---HHHHHTTCCEE-EECCGGGTTTCS--CCCHHHHHHHHHHCSSCEEECS
T ss_pred CCCCCcceeEEEEEecCccCCCCCHHHHH---HHHHHcCCCEE-EEeCCCCCCCCC--CCCHHHHHHHHHhCCccEEEEC
Confidence 11 123333 33456676555 566544322 22 147788888888 799998721
Q ss_pred CCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH-cCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHH
Q 022892 197 THSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA-VGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELL 265 (290)
Q Consensus 197 sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva-~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv 265 (290)
.-+ . +.-...+.. .|++|+++=+-+ +...++..++++++
T Consensus 504 Gi~-----------------s-----~~d~~~~~~~~G~~gvivg~a~--------~~~~~~~~e~~~~l 543 (555)
T 1jvn_A 504 GAG-----------------V-----PEHFEEAFLKTRADACLGAGMF--------HRGEFTVNDVKEYL 543 (555)
T ss_dssp CCC-----------------S-----HHHHHHHHHHSCCSEEEESHHH--------HTTSCCHHHHHHHH
T ss_pred CCC-----------------C-----HHHHHHHHHhcCChHHHHHHHH--------HcCCCCHHHHHHHH
Confidence 111 1 222334444 799999998865 33455666666553
|
| >3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* | Back alignment and structure |
|---|
Probab=87.99 E-value=7.1 Score=37.71 Aligned_cols=167 Identities=16% Similarity=0.074 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
.+-+.|+++.++-+..++-.+||+-++..+.+ ..+.+.+.+..+... ...+..|.|=+ |.. +++|+.+.++.
T Consensus 48 ~~a~~lr~Ll~~~~~l~~~ga~D~~sA~~~~~aGf~Aiy~SG~~vAa~---~~~~~~G~PD~---~~~-~~~ev~~~v~r 120 (433)
T 3eol_A 48 MGANRLWKLIHEEDFVNALGALSGNQAMQMVRAGLKAIYLSGWQVAAD---ANTASAMYPDQ---SLY-PANAGPELAKR 120 (433)
T ss_dssp HHHHHHHHHHHHSSCEEEEBCSSHHHHHHHHHTTCCCEEEC------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHhccCCCEEeCCCCcHHHHHHHHHhCCCEEEechHHHHhc---cchhcCCCCCC---ccC-CHHHHHHHHHH
Confidence 34567888888888889999999999999988 699999999887652 11123455522 333 67777776665
Q ss_pred HHHcC--CCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH
Q 022892 153 VRLAG--NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI 230 (290)
Q Consensus 153 i~~~G--n~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAv 230 (290)
|...- .+++...+ +.. .+ .+| +.+||++|.+.+- |...-+....+..+
T Consensus 121 I~~a~~~~d~~~~~~-~~~--~~--~~d---------~~lPIiaD~DtGf----------------G~~~nv~rtVk~~~ 170 (433)
T 3eol_A 121 INRTLQRADQIETAE-GKG--LS--VDT---------WFAPIVADAEAGF----------------GDPLDAFEIMKAYI 170 (433)
T ss_dssp HHHHHHHHHHHHHHT-TSC--CS--SSC---------SCCCEEEECC-------------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhh-ccc--cc--ccC---------CCCCeEEECCCCC----------------CCcHHHHHHHHHHH
Confidence 53210 00000000 110 01 011 4689999999874 32223445556668
Q ss_pred HcCCCEEEEeeeCC-CCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 231 AVGVDGVFMEVHDD-PLNAP-VDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 231 a~GA~G~~IEkH~t-~dka~-~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
.+||.|+-||-... |.|-- -+++.-.+.+|+-+=++..+.....+|.
T Consensus 171 ~AGaAGi~IEDQ~~~~KkCGH~~gk~lvp~ee~v~rI~AAr~A~~~~g~ 219 (433)
T 3eol_A 171 EAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGT 219 (433)
T ss_dssp HHTCSEEEEESBCC---------CCEECCHHHHHHHHHHHHHHHHHHTC
T ss_pred HcCCeEEEEecCCCCCCcCCCCCCCcccCHHHHHHHHHHHHHHHHhcCC
Confidence 89999999997753 43321 1444455666655555555555554554
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=87.97 E-value=1.7 Score=42.39 Aligned_cols=116 Identities=16% Similarity=-0.008 Sum_probs=67.4
Q ss_pred cHHHHhh-hcceecccCCccCCH---HHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-----eec
Q 022892 99 QCEEVGK-VADIIQIPAFLCRQT---DLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-----ERG 167 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~~n~---~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~-----~~g 167 (290)
.++.+.+ .+|++.|.+..-... ++++++.+. +.||+..+.. +.++.+.++ ..|-+-|.+- +|+
T Consensus 235 ~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~--t~e~a~~l~----~aGaD~I~Vg~g~Gs~~~ 308 (496)
T 4fxs_A 235 RVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVA--TAEGARALI----EAGVSAVKVGIGPGSICT 308 (496)
T ss_dssp HHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEEC--SHHHHHHHH----HHTCSEEEECSSCCTTBC
T ss_pred HHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccC--cHHHHHHHH----HhCCCEEEECCCCCcCcc
Confidence 3444444 688888877655433 566666554 7899995543 577766554 4576544432 444
Q ss_pred CCC--CCCCCCCCchhHHHHHh----cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 168 TMF--GYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 168 s~~--~y~~~~~dL~~i~~lk~----~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
+.. ++.. -++.++..+.+ +++||+.|..=. . +.-+..|.++||+|+++=+
T Consensus 309 tr~~~g~g~--p~~~~i~~v~~~~~~~~iPVIa~GGI~----------------~------~~di~kala~GAd~V~iGs 364 (496)
T 4fxs_A 309 TRIVTGVGV--PQITAIADAAGVANEYGIPVIADGGIR----------------F------SGDISKAIAAGASCVMVGS 364 (496)
T ss_dssp HHHHHCCCC--CHHHHHHHHHHHHGGGTCCEEEESCCC----------------S------HHHHHHHHHTTCSEEEEST
T ss_pred cccccCCCc--cHHHHHHHHHHHhccCCCeEEEeCCCC----------------C------HHHHHHHHHcCCCeEEecH
Confidence 320 1111 24555555543 489998752211 1 2223456889999999987
Q ss_pred eCC
Q 022892 242 HDD 244 (290)
Q Consensus 242 H~t 244 (290)
-|.
T Consensus 365 ~f~ 367 (496)
T 4fxs_A 365 MFA 367 (496)
T ss_dssp TTT
T ss_pred HHh
Confidence 664
|
| >3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ... | Back alignment and structure |
|---|
Probab=87.95 E-value=1.6 Score=43.47 Aligned_cols=109 Identities=16% Similarity=0.142 Sum_probs=78.6
Q ss_pred HHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC--CcEEEeecCcccHHHHhh---hcceecccC
Q 022892 40 KSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD--IPIVTDVHETVQCEEVGK---VADIIQIPA 114 (290)
Q Consensus 40 ~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G--i~~~s~~~d~~~~~~l~~---~~d~~kIgs 114 (290)
++.+.+.|+|.|....-.. .+.+.+++++..+.| +.+++-+-.++.++-+++ ..|.+-||-
T Consensus 248 l~f~~~~~vD~ia~SfVr~--------------a~Dv~~~r~~L~~~g~~i~IIAKIE~~eav~nldeIl~~sDgImVaR 313 (550)
T 3gr4_A 248 LKFGVEQDVDMVFASFIRK--------------ASDVHEVRKVLGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVAR 313 (550)
T ss_dssp HHHHHHTTCSEEEETTCCS--------------HHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEEEEEH
T ss_pred HHHHHHcCCCEEEecCCCC--------------HHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHhCCEEEEcc
Confidence 3455667999998653321 477888999887765 889999999988776666 478888887
Q ss_pred Ccc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEE
Q 022892 115 FLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 115 ~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
+|+ -|-.+++.+-+.||||+.-|-|- .|-.|+-..+..+.. |-+-++|
T Consensus 314 GDLgvei~~e~vp~~Qk~iI~~c~~agkpVi~ATQMLeSMi~~p~PTRAEvsDVanAvld-G~DavML 380 (550)
T 3gr4_A 314 GDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLD-GADCIML 380 (550)
T ss_dssp HHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHH-TCSEEEE
T ss_pred chhcccCCHHHHHHHHHHHHHHHHHhCCCEEEEehhhHHhhcCCCccHHHHHHHHHHHHc-CCcEEEE
Confidence 776 34456677778899999765552 367888887777653 5554555
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=87.93 E-value=7.8 Score=36.31 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHHHHHHHH----------------------HHHHHcCCCcEEEEeecCCCCC------
Q 022892 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSA----------------------EKVRLAGNPNVMVCERGTMFGY------ 172 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~~~tl~e~~~Av----------------------e~i~~~Gn~~i~L~~~gs~~~y------ 172 (290)
.+-+++++.|.|.++||..+.++||+..+. +..+..|..-++|.--....+.
T Consensus 90 ~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r 169 (352)
T 3sgz_A 90 STARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKR 169 (352)
T ss_dssp HHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHH
T ss_pred HHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhh
Confidence 566888899999999999888999998874 2344556655555432211100
Q ss_pred ------------------------------CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCccc
Q 022892 173 ------------------------------NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 221 (290)
Q Consensus 173 ------------------------------~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~ 221 (290)
-+..++...+.++++ .++||++=-.. .
T Consensus 170 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~lr~~~~~PvivK~v~------------------~---- 227 (352)
T 3sgz_A 170 NQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGIL------------------T---- 227 (352)
T ss_dssp HHHHSCHHHHTTCC---------------CCCTTCCHHHHHHHHHHCCSCEEEEEEC------------------S----
T ss_pred cCCCCCcccchhhhcccccccccchhhhhccCCCCCHHHHHHHHHhcCCCEEEEecC------------------c----
Confidence 012344567888888 78998771111 1
Q ss_pred HHHHHHHHHHcCCCEEEEeeeC
Q 022892 222 IPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 222 ~~~~a~aAva~GA~G~~IEkH~ 243 (290)
...++.++..|+||+++--|-
T Consensus 228 -~e~A~~a~~~GaD~I~vsn~G 248 (352)
T 3sgz_A 228 -KEDAELAMKHNVQGIVVSNHG 248 (352)
T ss_dssp -HHHHHHHHHTTCSEEEECCGG
T ss_pred -HHHHHHHHHcCCCEEEEeCCC
Confidence 567888999999999987773
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=87.88 E-value=14 Score=32.70 Aligned_cols=169 Identities=12% Similarity=0.098 Sum_probs=95.7
Q ss_pred HHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCcc-CCHHH
Q 022892 44 TKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLC-RQTDL 122 (290)
Q Consensus 44 ~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~-~n~~l 122 (290)
.++|.|++.-+.= .|...+.-++.++++.+ ..+|++-.|.+++++ ...+|.+-+++=.. +|..+
T Consensus 33 ~~~GtDaI~vGgs-----------~gvt~~~~~~~v~~ik~-~~~Piil~p~~~~~~---~~gaD~il~pslln~~~~~~ 97 (235)
T 3w01_A 33 CMSQTDAIMIGGT-----------DDVTEDNVIHLMSKIRR-YPLPLVLEISNIESV---MPGFDFYFVPTVLNSTDVAF 97 (235)
T ss_dssp HTSSCSEEEECCS-----------SCCCHHHHHHHHHHHTT-SCSCEEEECCCSTTC---CTTCSEEEEEEETTBSSGGG
T ss_pred HHcCCCEEEECCc-----------CCcCHHHHHHHHHHhcC-cCCCEEEecCCHHHh---hcCCCEEEEccccCCCCcch
Confidence 3579999988641 12222334444555544 999999999998665 55789888887544 34444
Q ss_pred -----HHHHHhcCC------eEE----EeCCCCCCHHH---------HHHHHHHHHH----cCCCcEEEEeecCCCCCCC
Q 022892 123 -----LVAAAKTGK------IIN----IKKGQFCASSV---------MVNSAEKVRL----AGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 123 -----L~~~a~~~~------PVi----lstG~~~tl~e---------~~~Ave~i~~----~Gn~~i~L~~~gs~~~y~~ 174 (290)
++.+.+.|. +|. +=++.+ +.+. .+.++.+.+. -|- .++=++. + +-+
T Consensus 98 i~g~~~~a~~~~gl~~~~~e~i~~gYivv~p~s-~v~~v~~a~~~~~~e~iaa~A~~a~~~~g~-~~vY~e~-s--G~~- 171 (235)
T 3w01_A 98 HNGTLLEALKTYGHSIDFEEVIFEGYVVCNADS-KVAKHTKANTDLTTEDLEAYAQMVNHMYRL-PVMYIEY-S--GIY- 171 (235)
T ss_dssp TTHHHHHHHHHHGGGCCGGGEEEEEEEECCSSS-HHHHHTTBCCCCCHHHHHHHHHHHHHTTCC-SEEEEEC-T--TSC-
T ss_pred hhhHHHHHHHHcCCCCcccceeeeeEEEECCCC-ChhhcccCCcCCCHHHHHHHHHHHHHHcCC-CEEEEec-C--CCc-
Confidence 345666664 333 234433 3331 4444444321 133 3444444 3 111
Q ss_pred CCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCC
Q 022892 175 LIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDG 252 (290)
Q Consensus 175 ~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~ 252 (290)
.+...+..+|+ + ++||++- + |.+. +..+..+.. ||||+|+=+-++-
T Consensus 172 --g~~~~v~~ir~~~~~~pv~vG-----------------f---GI~~--~e~a~~~~~-gAD~VVVGSai~~------- 219 (235)
T 3w01_A 172 --GDVSKVQAVSEHLTETQLFYG-----------------G---GISS--EQQATEMAA-IADTIIVGDIIYK------- 219 (235)
T ss_dssp --CCHHHHHHHHTTCSSSEEEEE-----------------S---CCCS--HHHHHHHHT-TSSEEEECTHHHH-------
T ss_pred --CCHHHHHHHHHhcCCCCEEEE-----------------C---CcCC--HHHHHHHHc-CCCEEEECCceec-------
Confidence 26778888888 6 7898761 1 1111 445555444 9999999877632
Q ss_pred CCCCChHHHHHHHHHHH
Q 022892 253 PTQWPLRNLEELLEELV 269 (290)
Q Consensus 253 ~~sl~p~~l~~lv~~ir 269 (290)
+|+.++++++.++
T Consensus 220 ----~~~~~~e~v~~v~ 232 (235)
T 3w01_A 220 ----DIKKALKTVKIKE 232 (235)
T ss_dssp ----CHHHHHHTTCC--
T ss_pred ----CHHHHHHHHHHHh
Confidence 3666666655443
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=87.81 E-value=4.6 Score=36.73 Aligned_cols=72 Identities=15% Similarity=0.040 Sum_probs=53.7
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCC---------ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHH
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAF---------LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMV 147 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~---------~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~ 147 (290)
+.+.+++.|++++..+.+++.+..+.+ .+|++.+-+. ...+..+++++.+ .+.||+..-|.. +.+++.
T Consensus 110 ~~~~l~~~gi~vi~~v~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~-~~~~v~ 188 (328)
T 2gjl_A 110 HIAEFRRHGVKVIHKCTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFA-DGRGLV 188 (328)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCC-SHHHHH
T ss_pred HHHHHHHcCCCEEeeCCCHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCC-CHHHHH
Confidence 334456679999999888887777666 6998888221 2356678888764 589999999998 899888
Q ss_pred HHHH
Q 022892 148 NSAE 151 (290)
Q Consensus 148 ~Ave 151 (290)
.++.
T Consensus 189 ~al~ 192 (328)
T 2gjl_A 189 AALA 192 (328)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.81 E-value=2.7 Score=38.25 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..+++++++|++-.. .+.+.+ .+ .+|++-|..-.-...++..++.+.||+|++.+.++.+++|....++..++
T Consensus 39 ~~~~~~~~~~~~~~~-----~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~ 113 (344)
T 3ezy_A 39 RLREMKEKLGVEKAY-----KDPHELIEDPNVDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKK 113 (344)
T ss_dssp HHHHHHHHHTCSEEE-----SSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcee-----CCHHHHhcCCCCCEEEEcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345566778886222 233444 43 69999999999888999899999999999999999999998888776655
Q ss_pred cC
Q 022892 156 AG 157 (290)
Q Consensus 156 ~G 157 (290)
.|
T Consensus 114 ~g 115 (344)
T 3ezy_A 114 AD 115 (344)
T ss_dssp HT
T ss_pred hC
Confidence 54
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=87.74 E-value=3.4 Score=37.46 Aligned_cols=92 Identities=12% Similarity=0.144 Sum_probs=54.1
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.++. |...+++.+++.. ++|+|++.-. .|+ |..+. +++ +...+++++..++|++-
T Consensus 74 ~grvpviaGvg~~-~t~~ai~la~~a~----~~Gadavlv~--------~P~-y~~~~-~~~l~~~f~~va~a~~lPiil 138 (297)
T 3flu_A 74 AKRVPVIAGTGAN-NTVEAIALSQAAE----KAGADYTLSV--------VPY-YNKPS-QEGIYQHFKTIAEATSIPMII 138 (297)
T ss_dssp TTSSCEEEECCCS-SHHHHHHHHHHHH----HTTCSEEEEE--------CCC-SSCCC-HHHHHHHHHHHHHHCCSCEEE
T ss_pred CCCCcEEEeCCCc-CHHHHHHHHHHHH----HcCCCEEEEC--------CCC-CCCCC-HHHHHHHHHHHHHhCCCCEEE
Confidence 4567899999874 6666666666554 4799987653 122 21222 344 55677888888999984
Q ss_pred e--------ecCcccHHHHhh--hcceecccCCccCCH
Q 022892 93 D--------VHETVQCEEVGK--VADIIQIPAFLCRQT 120 (290)
Q Consensus 93 ~--------~~d~~~~~~l~~--~~d~~kIgs~~~~n~ 120 (290)
= .++++.+..|.+ .+-.+|-.+.++.++
T Consensus 139 Yn~P~~tg~~l~~~~~~~La~~pnivgiKdssgd~~~~ 176 (297)
T 3flu_A 139 YNVPGRTVVSMTNDTILRLAEIPNIVGVKEASGNIGSN 176 (297)
T ss_dssp EECHHHHSSCCCHHHHHHHTTSTTEEEEEECSCCHHHH
T ss_pred EECCchhccCCCHHHHHHHHcCCCEEEEEeCCCCHHHH
Confidence 2 233333444433 244556555555443
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=87.72 E-value=6.5 Score=35.92 Aligned_cols=178 Identities=15% Similarity=0.134 Sum_probs=101.8
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHH-HhcCCcEEE-ee
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVK-IAYDIPIVT-DV 94 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~-~~~Gi~~~s-~~ 94 (290)
+.++--|--. +.+...+.++++. +.|.|+|+-.+.. ..+| ++.+..+.+.+ +.++||++- +|
T Consensus 41 ~~~liDPdK~-~~~~~~~~~~~~~----~sGtDai~VGS~~------vt~~-----~~~~~~~v~~ik~~~~lPvil~fP 104 (286)
T 3vk5_A 41 PVHIIDPFKV-PVTEAVEKAAELT----RLGFAAVLLASTD------YESF-----ESHMEPYVAAVKAATPLPVVLHFP 104 (286)
T ss_dssp EEEEECTTTS-CHHHHHHHHHHHH----HTTCSCEEEECSC------CSSH-----HHHHHHHHHHHHHHCSSCEEEECC
T ss_pred ceEEECCCCC-CcHHHHHHHHHHH----hcCCCEEEEccCC------CCcc-----hHHHHHHHHHHHHhCCCCEEEECC
Confidence 4555566542 4444445555554 4799999886221 1112 24455544444 449999999 99
Q ss_pred ---cCcccHHHHhhhcceecccCCcc-CCHHHHHHH-----H---------hcCCe-----EEEeCC---------CCC-
Q 022892 95 ---HETVQCEEVGKVADIIQIPAFLC-RQTDLLVAA-----A---------KTGKI-----INIKKG---------QFC- 141 (290)
Q Consensus 95 ---~d~~~~~~l~~~~d~~kIgs~~~-~n~~lL~~~-----a---------~~~~P-----VilstG---------~~~- 141 (290)
-+..++ ...+|++-++|=.- +|...+-.. + +.+.+ ++++.| ...
T Consensus 105 P~~g~~~~i---~~~aDa~l~psvlNs~n~~~i~g~~~~~~aa~~v~~~~~~~ge~ip~gYL~v~~g~k~V~fv~~~~~~ 181 (286)
T 3vk5_A 105 PRPGAGFPV---VRGADALLLPALLGSGDDYFVWKSFLETLAAFPGRIPREEWPELLLTVALTFGEDPRTGDLLGTVPVS 181 (286)
T ss_dssp CBTTTBSCC---CTTCSEEEEEEETTBSSHHHHTHHHHHHHHHCSTTSCGGGCCEEEEEEEEECSCCHHHHHHHCBCCCC
T ss_pred CCCCCcccc---ccCCCEEEEEEEecCCCcccccCcHHHHHHhHHHHHHHHHhCCcceEEEEEECCCCceeeeeCCCCCC
Confidence 777655 45788888887644 454433211 1 22211 345655 111
Q ss_pred CHHHHHHHHHHHH---HcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccC
Q 022892 142 ASSVMVNSAEKVR---LAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 142 tl~e~~~Ave~i~---~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
++ |+.....|-+ ..| -+++-++-+. ..+|+..+..+++ . ++||.+-
T Consensus 182 ~~-e~A~~~aYa~~gad~G-~~lV~LD~~~------~~v~~e~V~~I~~~~~~~iPV~vG-------------------- 233 (286)
T 3vk5_A 182 TA-STEEIDRYLHVARAFG-FHMVYLYSRN------EHVPPEVVRHFRKGLGPDQVLFVS-------------------- 233 (286)
T ss_dssp CS-SSHHHHHHHHHHHHTT-CSEEEEECSS------SCCCHHHHHHHHHHSCTTCEEEEE--------------------
T ss_pred CH-HHHHHHHHHHHHHHcC-CCEEEEcCCC------CcCCHHHHHHHHHhcCCCCCEEEE--------------------
Confidence 22 3331122222 223 3788888433 2367788888888 7 8998771
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 216 GGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 216 ~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+|.|. ...+..+..+|||++++=+-+
T Consensus 234 GGIrs--~Eda~~ll~aGAD~VVVGSAa 259 (286)
T 3vk5_A 234 GNVRS--GRQVTEYLDSGADYVGFAGAL 259 (286)
T ss_dssp SSCCS--HHHHHHHHHTTCSEEEESGGG
T ss_pred eCCCC--HHHHHHHHHcCCCEEEECchh
Confidence 12221 445667788999999998876
|
| >3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=87.70 E-value=3.9 Score=39.64 Aligned_cols=94 Identities=15% Similarity=0.041 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh---cceecccCCc--cCCHHHHHHHHh--cCCeEEEeCCCCCCHHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV---ADIIQIPAFL--CRQTDLLVAAAK--TGKIINIKKGQFCASSV 145 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~---~d~~kIgs~~--~~n~~lL~~~a~--~~~PVilstG~~~tl~e 145 (290)
++-+..+++.+++++|.++=+|+++++.+-...+ +.-++|-+.+ ++|...++.+-. .---|++|-++.+++.|
T Consensus 282 ~elid~y~~lle~ypI~~IEDPl~~dD~eg~a~Lt~~lg~i~IvGDEl~vTn~~~i~~~Ie~~a~n~IlIKvnqiGGITE 361 (441)
T 3qtp_A 282 DGLIAEYVDYGKHYPIASIEDPFAEDDWAAWNKFTVEHGNFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQIGTLTE 361 (441)
T ss_dssp HHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECGGGTCCHHH
T ss_pred HHHHHHHHHHhhhcceeeecCCCChHHHHHHHHHHHhcCCceEEeccccccCHHHHHHHHHcCCCCEEEecccccccHHH
Confidence 3556677888999999999999999998876653 3213333433 467776666533 33468889998889999
Q ss_pred HHHHHHHHHHcCCCcEEEEeec
Q 022892 146 MVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 146 ~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
+.+++...++.| -.+++-||.
T Consensus 362 alkaa~lA~~~G-~~vmvsHrs 382 (441)
T 3qtp_A 362 TFKTIKMAQEKG-WGVMASHRS 382 (441)
T ss_dssp HHHHHHHHHHTT-CEEEEECCS
T ss_pred HHHHHHHHHHcC-CeEEEeCCC
Confidence 999988877765 356666764
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=87.64 E-value=4.6 Score=37.17 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEEe-ecCcccHHHHhh-
Q 022892 31 HIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVTD-VHETVQCEEVGK- 105 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s~-~~d~~~~~~l~~- 105 (290)
..++.++.+.+ .| ++++-...- ++.. ...++.++++++.. +++++.- +.+++.+..+.+
T Consensus 106 ~~~~~a~~~~~----~g~~~~~i~i~~~-----------~G~~-~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a 169 (336)
T 1ypf_A 106 DEYEFVQQLAA----EHLTPEYITIDIA-----------HGHS-NAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENA 169 (336)
T ss_dssp HHHHHHHHHHH----TTCCCSEEEEECS-----------SCCS-HHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHh----cCCCCCEEEEECC-----------CCCc-HHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc
Confidence 35677777766 47 777643210 1111 35567777777777 4667765 888888888887
Q ss_pred hcceecccC---CccC------------CHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 106 VADIIQIPA---FLCR------------QTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 106 ~~d~~kIgs---~~~~------------n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
.+|++.++. +.+. ...+|.++.+ .+.||+.+-|.. +..++..|+.
T Consensus 170 Gad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~-~g~Dv~kala 230 (336)
T 1ypf_A 170 GADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIR-TNGDVAKSIR 230 (336)
T ss_dssp TCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCC-STHHHHHHHH
T ss_pred CCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCC-CHHHHHHHHH
Confidence 699999932 2221 4566666654 489999999999 9999998864
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=87.58 E-value=4 Score=38.41 Aligned_cols=77 Identities=12% Similarity=0.057 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCcEEEe-e---cCcccHHHHhh-hcceecccCC---cc-------------------CCHHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTD-V---HETVQCEEVGK-VADIIQIPAF---LC-------------------RQTDLLVAA 126 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~-~---~d~~~~~~l~~-~~d~~kIgs~---~~-------------------~n~~lL~~~ 126 (290)
.+++.++++++..++|++.- + .+++.+..+.+ .+|++.|+.. .. .....|..+
T Consensus 193 ~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v 272 (365)
T 3sr7_A 193 SWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNA 272 (365)
T ss_dssp HHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHH
Confidence 45678888889999999996 6 67888888877 6999988543 11 112344555
Q ss_pred Hhc--CCeEEEeCCCCCCHHHHHHHHH
Q 022892 127 AKT--GKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 127 a~~--~~PVilstG~~~tl~e~~~Ave 151 (290)
... ..||+.+-|.. +..++..|+.
T Consensus 273 ~~~~~~ipvia~GGI~-~g~Dv~KaLa 298 (365)
T 3sr7_A 273 QPLMDKVEILASGGIR-HPLDIIKALV 298 (365)
T ss_dssp GGGTTTSEEEECSSCC-SHHHHHHHHH
T ss_pred HHhcCCCeEEEeCCCC-CHHHHHHHHH
Confidence 544 67999999998 9999888764
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=87.53 E-value=7.8 Score=35.67 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCC----C--CCCC-CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCC
Q 022892 142 ASSVMVNSAEKVRLAGNPNVMVCERGTM----F--GYND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGG 212 (290)
Q Consensus 142 tl~e~~~Ave~i~~~Gn~~i~L~~~gs~----~--~y~~-~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~ 212 (290)
+.++++.|++.+...|.+.+.+.-..|. + +... +.++ ...+...|+.++.|.|++-..-
T Consensus 79 ~~~~i~~a~~al~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~------------ 146 (325)
T 3eeg_A 79 KEADINIAGEALRFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAG------------ 146 (325)
T ss_dssp CHHHHHHHHHHHTTCSSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGG------------
T ss_pred CHHHHHHHHHhhcccCCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccc------------
Confidence 7889999999888778778887766652 1 1111 2222 1334445556777877544320
Q ss_pred ccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 213 VASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 213 ~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
.-..+++..++.++..+|++-+ - ++|-.-.+.|.++.++++.+++.
T Consensus 147 ---~~~~~~~~~~~~~~~~~G~~~i----~------l~DT~G~~~P~~v~~lv~~l~~~ 192 (325)
T 3eeg_A 147 ---RADQAFLARMVEAVIEAGADVV----N------IPDTTGYMLPWQYGERIKYLMDN 192 (325)
T ss_dssp ---GSCHHHHHHHHHHHHHHTCSEE----E------CCBSSSCCCHHHHHHHHHHHHHH
T ss_pred ---cchHHHHHHHHHHHHhcCCCEE----E------ecCccCCcCHHHHHHHHHHHHHh
Confidence 0124667778888889999822 2 37888899999999999988764
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=87.44 E-value=1.4 Score=41.33 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCC----HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQ----TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n----~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
+..+++++++|+++.++.- .+.+.+|+.-|...+-.+ .++.+++-+.||+|++.+.+ |++|+..-++.
T Consensus 43 ~~a~~~a~~~gv~~~~~~~------~l~~~~D~v~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKPl--~~~ea~~l~~~ 114 (372)
T 4gmf_A 43 ARSRELAHAFGIPLYTSPE------QITGMPDIACIVVRSTVAGGAGTQLARHFLARGVHVIQEHPL--HPDDISSLQTL 114 (372)
T ss_dssp HHHHHHHHHTTCCEESSGG------GCCSCCSEEEECCC--CTTSHHHHHHHHHHHTTCEEEEESCC--CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEECCHH------HHhcCCCEEEEECCCcccchhHHHHHHHHHHcCCcEEEecCC--CHHHHHHHHHH
Confidence 4567788999999765432 233458888888777666 78888888899999999995 78998888876
Q ss_pred HHHcC
Q 022892 153 VRLAG 157 (290)
Q Consensus 153 i~~~G 157 (290)
.++.|
T Consensus 115 A~~~g 119 (372)
T 4gmf_A 115 AQEQG 119 (372)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 66655
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=87.44 E-value=14 Score=32.32 Aligned_cols=179 Identities=13% Similarity=0.164 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCccc---------H
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQ---------C 100 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~---------~ 100 (290)
....++++.+.......+++.++...|. .|..+++..++++..-=.|+.+ +
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~--------------------~L~~v~~~~~i~v~aQdv~~~~~Ga~TGeis~ 78 (226)
T 1w0m_A 19 KRAVELAKAAERAARELGVNIVVAPNHL--------------------ELGLVSQSVDIPVYAQGADVEAGGAHTAHVSL 78 (226)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECCGG--------------------GHHHHHTTCSSCBEESCCSBSSCSSCTTCCBH
T ss_pred HHHHHHHHHHHhcccccCCcEEEeCCHH--------------------HHHHHHHhcCCceEeeECChhhCCCccCCCCH
Confidence 5678888888765444455555544332 2333444458999997788888 9
Q ss_pred HHHhh-hcceecccCCc--cCCH---HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC-
Q 022892 101 EEVGK-VADIIQIPAFL--CRQT---DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN- 173 (290)
Q Consensus 101 ~~l~~-~~d~~kIgs~~--~~n~---~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~- 173 (290)
..+.+ .++++-||-.+ ...- .+++.+-+.|+-+++.-|- ..|...+ ...+ +.++-++-.-.-+..
T Consensus 79 ~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVge---~~e~~~~----~~~~-~~iIayep~waiGtG~ 150 (226)
T 1w0m_A 79 ENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCAPD---PRTSLAA----AALG-PHAVAVEPPELIGTGR 150 (226)
T ss_dssp HHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEESS---HHHHHHH----HHTC-CSEEEECCGGGTTTSC
T ss_pred HHHHHcCCCEEEEeeeeccCCHHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHH----hcCC-CCEEEEcChhhhccCC
Confidence 99988 69999999987 4322 3445566789999999994 4444433 2223 346655533211111
Q ss_pred ---CCCCC-chhHH-HHHh--cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCC
Q 022892 174 ---DLIVD-PRNLE-WMRE--ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPL 246 (290)
Q Consensus 174 ---~~~~d-L~~i~-~lk~--~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~d 246 (290)
+.+.| +.... .+++ .+++|++-++-. . ..........|+||++|=.-
T Consensus 151 ~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~-----------------~-----~n~~~~~~~~giDG~LVG~a---- 204 (226)
T 1w0m_A 151 AVSRYKPEAIVETVGLVSRHFPEVSVITGAGIE-----------------S-----GDDVAAALRLGTRGVLLASA---- 204 (226)
T ss_dssp CHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCC-----------------S-----HHHHHHHHHTTCSEEEECHH----
T ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC-----------------c-----HHHHHHHHhCCCCEEEECHH----
Confidence 11223 22222 2344 256777744332 1 23344456779999988544
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHH
Q 022892 247 NAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 247 ka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
+|.+++|.++++.+..
T Consensus 205 --------~l~a~~~~~~i~~l~~ 220 (226)
T 1w0m_A 205 --------AVKAKDPYAKIVELAK 220 (226)
T ss_dssp --------HHTCSSHHHHHHHHHH
T ss_pred --------HHCCcCHHHHHHHHHH
Confidence 5666677777766544
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.38 E-value=3 Score=37.69 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=57.1
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.++. |...+++.|++ |+++|+|++.-. .|+ |..+. +++ +...+++++..++|++-
T Consensus 67 ~gr~pviaGvg~~-~t~~ai~la~~----A~~~Gadavlv~--------~P~-y~~~s-~~~l~~~f~~ia~a~~lPiil 131 (292)
T 2vc6_A 67 NGRVPVIAGAGSN-STAEAIAFVRH----AQNAGADGVLIV--------SPY-YNKPT-QEGIYQHFKAIDAASTIPIIV 131 (292)
T ss_dssp TTSSCBEEECCCS-SHHHHHHHHHH----HHHTTCSEEEEE--------CCC-SSCCC-HHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCcEEEecCCc-cHHHHHHHHHH----HHHcCCCEEEEc--------CCC-CCCCC-HHHHHHHHHHHHHhCCCCEEE
Confidence 3567799999973 55555555555 455799987653 122 22222 344 55677888999999986
Q ss_pred ------e--ecCcccHHHHhh-h--cceecccCCccCCHH
Q 022892 93 ------D--VHETVQCEEVGK-V--ADIIQIPAFLCRQTD 121 (290)
Q Consensus 93 ------~--~~d~~~~~~l~~-~--~d~~kIgs~~~~n~~ 121 (290)
+ .++++.+..|.+ . +-.+|-.+.++.+..
T Consensus 132 Yn~P~~tg~~l~~~~~~~La~~~pnIvgiK~s~gd~~~~~ 171 (292)
T 2vc6_A 132 YNIPGRSAIEIHVETLARIFEDCPNVKGVXDATGNLLRPS 171 (292)
T ss_dssp EECHHHHSCCCCHHHHHHHHHHCTTEEEEEECSCCTHHHH
T ss_pred EeCccccCcCCCHHHHHHHHhhCCCEEEEecCCCCHHHHH
Confidence 2 244555555544 2 556777777766554
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=87.21 E-value=9.1 Score=34.48 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=41.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||||.++. |...+++.|++..+ +|+|++.-. .|+ |..+. +++ +.+.+++++..++|++-
T Consensus 69 ~grvpviaGvg~~-~t~~ai~la~~a~~----~Gadavlv~--------~P~-y~~~~-~~~l~~~f~~ia~a~~lPiil 133 (292)
T 3daq_A 69 DKRVPVIAGTGTN-DTEKSIQASIQAKA----LGADAIMLI--------TPY-YNKTN-QRGLVKHFEAIADAVKLPVVL 133 (292)
T ss_dssp TTSSCEEEECCCS-CHHHHHHHHHHHHH----HTCSEEEEE--------CCC-SSCCC-HHHHHHHHHHHHHHHCSCEEE
T ss_pred CCCCcEEEeCCcc-cHHHHHHHHHHHHH----cCCCEEEEC--------CCC-CCCCC-HHHHHHHHHHHHHhCCCCEEE
Confidence 4677899999863 66666776666555 699987653 122 21222 344 55677888888999883
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=87.00 E-value=2.1 Score=38.91 Aligned_cols=70 Identities=20% Similarity=0.088 Sum_probs=54.9
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHHhh--hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEVGK--VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l~~--~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
+.+.++++|..+. .+.+.+.+ .+|++-|....-...++..++.+.||+|++.+.++.+++|....++..+
T Consensus 42 ~~~~a~~~g~~~~------~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~ 113 (344)
T 3euw_A 42 AQRLAEANGAEAV------ASPDEVFARDDIDGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIG 113 (344)
T ss_dssp HHHHHHTTTCEEE------SSHHHHTTCSCCCEEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCcee------CCHHHHhcCCCCCEEEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4566778885443 24444444 6999999999999999999999999999999999989999887766443
|
| >3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* | Back alignment and structure |
|---|
Probab=87.00 E-value=2.6 Score=41.48 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=78.6
Q ss_pred HHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc--CCcEEEeecCcccHHHHhh---hcceecccC
Q 022892 40 KSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY--DIPIVTDVHETVQCEEVGK---VADIIQIPA 114 (290)
Q Consensus 40 ~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~--Gi~~~s~~~d~~~~~~l~~---~~d~~kIgs 114 (290)
++.+.+.|+|.|....-.. .+.+.+++++..+. .+.+++-+-.++.++-+++ ..|.+-||-
T Consensus 198 l~~~~~~~vD~i~~sfVr~--------------a~dv~~~r~~l~~~~~~i~IiaKIE~~eav~nldeIl~~sDgImVaR 263 (499)
T 3hqn_D 198 LQFGVEQGVDMIFASFIRS--------------AEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVAR 263 (499)
T ss_dssp HHHHHHTTCSEEEETTCCS--------------HHHHHHHHHHHCGGGTTSEEEEEECSHHHHHTHHHHHHHSSEEEEEH
T ss_pred HHHHHHcCCCEEEecCCCC--------------HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHhHHHHHHhCCcEEEcc
Confidence 3455667999988753331 47788888888654 5889999999888776665 489999988
Q ss_pred Ccc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEE
Q 022892 115 FLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 115 ~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
+|+ -|-.+++.+-..||||++-|-|- .|-.|+-..+..+.. |-+-++|
T Consensus 264 GDLgvEi~~e~vp~~Qk~iI~~c~~agkpVi~ATQmLeSMi~~p~PTRAEvsDVanaV~d-G~DavML 330 (499)
T 3hqn_D 264 GDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFN-GADCVML 330 (499)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEESSSSGGGGTSSSCCHHHHHHHHHHHHH-TCSEEEE
T ss_pred ccccCcCCHHHHHHHHHHHHHHHHHcCCCeEEeehhHHHhccCCCccHHHHHHHHHHHHc-CCcEEEE
Confidence 876 34456677778899999955542 377888887777653 5554555
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=87.00 E-value=7.5 Score=35.25 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=41.1
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcC-CcEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYD-IPIV 91 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~G-i~~~ 91 (290)
++++-||||.++. |...+++.+++..+ +|+|++.-. .|+ |.++. +++ +...+++++..+ +|++
T Consensus 78 ~grvpViaGvg~~-~t~~ai~la~~A~~----~Gadavlv~--------~P~-y~~~s-~~~l~~~f~~va~a~~~lPii 142 (303)
T 2wkj_A 78 KGKIKLIAHVGCV-STAESQQLAASAKR----YGFDAVSAV--------TPF-YYPFS-FEEHCDHYRAIIDSADGLPMV 142 (303)
T ss_dssp TTTSEEEEECCCS-SHHHHHHHHHHHHH----HTCSEEEEE--------CCC-SSCCC-HHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCcEEEecCCC-CHHHHHHHHHHHHh----CCCCEEEec--------CCC-CCCCC-HHHHHHHHHHHHHhCCCCCEE
Confidence 4578899999974 56666666666554 699987653 122 22222 344 456777888878 8887
Q ss_pred E
Q 022892 92 T 92 (290)
Q Consensus 92 s 92 (290)
-
T Consensus 143 l 143 (303)
T 2wkj_A 143 V 143 (303)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=86.91 E-value=2.5 Score=38.86 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=58.3
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.+++++++|+.. ..+ .+.+.+ .+ .+|++-|....-...++..++.+.||+|++.+.++.+++|....++..++.
T Consensus 62 ~~~~a~~~g~~~--~~~--~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 137 (357)
T 3ec7_A 62 AQAALDKYAIEA--KDY--NDYHDLINDKDVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKN 137 (357)
T ss_dssp HHHHHHHHTCCC--EEE--SSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCC--eee--CCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHh
Confidence 345667778521 111 234444 44 699999999999999999999999999999999999999999988877766
Q ss_pred CC
Q 022892 157 GN 158 (290)
Q Consensus 157 Gn 158 (290)
|.
T Consensus 138 g~ 139 (357)
T 3ec7_A 138 GK 139 (357)
T ss_dssp TS
T ss_pred CC
Confidence 54
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=86.82 E-value=3.6 Score=37.34 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=57.1
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.++. |...+++.|++..+ +|+|++.-. .|+ |.++. +++ +...+++++..++|++-
T Consensus 67 ~grvpviaGvg~~-~t~~ai~la~~A~~----~Gadavlv~--------~P~-y~~~s-~~~l~~~f~~va~a~~lPiil 131 (297)
T 2rfg_A 67 QGRVPVIAGAGSN-NPVEAVRYAQHAQQ----AGADAVLCV--------AGY-YNRPS-QEGLYQHFKMVHDAIDIPIIV 131 (297)
T ss_dssp TTSSCBEEECCCS-SHHHHHHHHHHHHH----HTCSEEEEC--------CCT-TTCCC-HHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCeEEEccCCC-CHHHHHHHHHHHHh----cCCCEEEEc--------CCC-CCCCC-HHHHHHHHHHHHHhcCCCEEE
Confidence 4567799999974 56666666666555 699987653 122 22233 344 55677888889999884
Q ss_pred e--------ecCcccHHHHhh--hcceecccCCccCCHH
Q 022892 93 D--------VHETVQCEEVGK--VADIIQIPAFLCRQTD 121 (290)
Q Consensus 93 ~--------~~d~~~~~~l~~--~~d~~kIgs~~~~n~~ 121 (290)
= .++++.+..|.+ .+-.+|-.+.++.++.
T Consensus 132 Yn~P~~tg~~l~~~~~~~La~~pnIvgiKds~gd~~~~~ 170 (297)
T 2rfg_A 132 YNIPPRAVVDIKPETMARLAALPRIVGVKDATTDLARIS 170 (297)
T ss_dssp EECHHHHSCCCCHHHHHHHHTSTTEEEEEECSCCTTHHH
T ss_pred EeCccccCCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHH
Confidence 1 234444444444 2445677777766543
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=86.78 E-value=4.3 Score=37.12 Aligned_cols=67 Identities=12% Similarity=0.011 Sum_probs=51.9
Q ss_pred HhcCCcEEEeecCcccHHHHhh-hcceecccCC-------ccCCHHHHHHHH-hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 84 IAYDIPIVTDVHETVQCEEVGK-VADIIQIPAF-------LCRQTDLLVAAA-KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 84 ~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~-------~~~n~~lL~~~a-~~~~PVilstG~~~tl~e~~~Ave 151 (290)
++.|++++..+.+.+.+..+.+ .+|++.+-+. ...+..+++++. ..+.||+..-|.. +.+++..++.
T Consensus 107 ~~~g~~v~~~v~~~~~a~~~~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~-~~~~~~~al~ 182 (332)
T 2z6i_A 107 HEAGIIVIPVVPSVALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIA-DGEGAAAGFM 182 (332)
T ss_dssp HHTTCEEEEEESSHHHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCC-SHHHHHHHHH
T ss_pred HHcCCeEEEEeCCHHHHHHHHHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCC-CHHHHHHHHH
Confidence 4569999999988888877776 6999988321 245667888765 4689999999998 8998887765
|
| >3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=86.69 E-value=1.7 Score=43.03 Aligned_cols=108 Identities=16% Similarity=0.135 Sum_probs=78.0
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC--CcEEEeecCcccHHHHhh---hcceecccCC
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD--IPIVTDVHETVQCEEVGK---VADIIQIPAF 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G--i~~~s~~~d~~~~~~l~~---~~d~~kIgs~ 115 (290)
+.+.+.|+|.|....-.. .+.+.+++++..+.| +.+++-+-.++.++-+++ ..|.+-||-+
T Consensus 224 ~f~~~~~vD~Ia~SFVr~--------------a~Dv~~~r~~l~~~g~~i~IIAKIE~~eav~nldeIl~~sDGIMVARG 289 (520)
T 3khd_A 224 NFAIPMGCNFIAASFIQS--------------ADDVRLIRNLLGPRGRHIKIIPKIENIEGIIHFDKILAESDGIMIARG 289 (520)
T ss_dssp HTHHHHTCCEEEETTCCS--------------HHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHHHHSSCEEECHH
T ss_pred HHHHHcCCCEEEECCCCC--------------HHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhHHHHHHhCCcEEEccc
Confidence 455667999988753331 478899999987765 889999999888776665 4788888877
Q ss_pred cc-----------CCHHHHHHHHhcCCeEEEeCCC--------CCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 116 LC-----------RQTDLLVAAAKTGKIINIKKGQ--------FCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 116 ~~-----------~n~~lL~~~a~~~~PVilstG~--------~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
|+ -|-.+++.+-..||||+.-|-| ..|-.|+-..+..+.. |-+-++|
T Consensus 290 DLgvEi~~e~vp~~Qk~iI~~c~~aGKPVi~ATQMLeSMi~~p~PTRAEvsDVanAVld-GaDavML 355 (520)
T 3khd_A 290 DLGMEISPEKVFLAQKLMISKCNLQGKPIITATQMLESMTKNPRPTRAEVTDVANAVLD-GTDCVML 355 (520)
T ss_dssp HHTTTSCGGGHHHHHHHHHHHHHHHTCCEEECCCCCGGGGTCSSCCHHHHHHHHHHHHH-TCSEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCeEEeehhhHHHhcCCCccHHHHHHHHHHHHh-CCCEEEe
Confidence 66 3445677777889999965554 2377888887777753 5555555
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=86.67 E-value=6.3 Score=33.72 Aligned_cols=71 Identities=10% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCcEEEeecCcccHHHHhh-hccee--cccCCc-------cCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 87 DIPIVTDVHETVQCEEVGK-VADII--QIPAFL-------CRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 87 Gi~~~s~~~d~~~~~~l~~-~~d~~--kIgs~~-------~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
|++++.++.+++.+..+.+ .+|++ .+.+.+ -.+..+++++.+.+.||+..=|.. |.+++....+ .
T Consensus 133 ~~~v~~~~~t~~ea~~a~~~Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~~ipvia~GGI~-s~~~~~~~~~----~ 207 (234)
T 1yxy_A 133 NQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIH-SPEEAKKIND----L 207 (234)
T ss_dssp TCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHTTCCEEEESCCC-SHHHHHHHHT----T
T ss_pred CCeEEEeCCCHHHHHHHHHcCCCEEeeeccccCCCCcCCCCCCHHHHHHHHhCCCCEEEECCCC-CHHHHHHHHH----C
Confidence 8999999998888877665 69998 555432 245677888765589999999988 8998887543 4
Q ss_pred CCCcEE
Q 022892 157 GNPNVM 162 (290)
Q Consensus 157 Gn~~i~ 162 (290)
|-.-++
T Consensus 208 Gad~v~ 213 (234)
T 1yxy_A 208 GVAGIV 213 (234)
T ss_dssp CCSEEE
T ss_pred CCCEEE
Confidence 654333
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=86.65 E-value=4.3 Score=37.16 Aligned_cols=90 Identities=10% Similarity=0.035 Sum_probs=57.2
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||||.++ |...+++.+++..+ +|+|++.-. .|+ |..+. +++ +...+++++..++|++-
T Consensus 79 ~grvpViaGvg~--~t~~ai~la~~A~~----~Gadavlv~--------~P~-y~~~s-~~~l~~~f~~va~a~~lPiil 142 (316)
T 3e96_A 79 HGRALVVAGIGY--ATSTAIELGNAAKA----AGADAVMIH--------MPI-HPYVT-AGGVYAYFRDIIEALDFPSLV 142 (316)
T ss_dssp TTSSEEEEEECS--SHHHHHHHHHHHHH----HTCSEEEEC--------CCC-CSCCC-HHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCcEEEEeCc--CHHHHHHHHHHHHh----cCCCEEEEc--------CCC-CCCCC-HHHHHHHHHHHHHhCCCCEEE
Confidence 457889999985 77777777766665 699998753 122 22222 344 55677888888999986
Q ss_pred e----ecCcccHHHHhh--hcceecccCCccCC
Q 022892 93 D----VHETVQCEEVGK--VADIIQIPAFLCRQ 119 (290)
Q Consensus 93 ~----~~d~~~~~~l~~--~~d~~kIgs~~~~n 119 (290)
= .++++.+..|.+ .+-.+|-.+.++.+
T Consensus 143 Yn~g~~l~~~~~~~La~~pnIvgiKdssgd~~~ 175 (316)
T 3e96_A 143 YFKDPEISDRVLVDLAPLQNLVGVKYAINDLPR 175 (316)
T ss_dssp EECCTTSCTHHHHHHTTCTTEEEEEECCCCHHH
T ss_pred EeCCCCCCHHHHHHHHcCCCEEEEEeCCCCHHH
Confidence 3 244445555544 24456666665543
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.60 E-value=5.3 Score=36.06 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=54.4
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.++. |...+++.+++. +++|+|++.-. .|+ |..+. +++ +...+++++..++|++-
T Consensus 67 ~grvpviaGvg~~-~t~~ai~la~~A----~~~Gadavlv~--------~P~-y~~~s-~~~l~~~f~~va~a~~lPiil 131 (294)
T 2ehh_A 67 AGRIKVIAGTGGN-ATHEAVHLTAHA----KEVGADGALVV--------VPY-YNKPT-QRGLYEHFKTVAQEVDIPIII 131 (294)
T ss_dssp TTSSEEEEECCCS-CHHHHHHHHHHH----HHTTCSEEEEE--------CCC-SSCCC-HHHHHHHHHHHHHHCCSCEEE
T ss_pred CCCCcEEEecCCC-CHHHHHHHHHHH----HhcCCCEEEEC--------CCC-CCCCC-HHHHHHHHHHHHHhcCCCEEE
Confidence 4577899999974 566666666555 44799987653 122 22222 344 55677888888999874
Q ss_pred e--------ecCcccHHHHh-h--hcceecccCCccCCH
Q 022892 93 D--------VHETVQCEEVG-K--VADIIQIPAFLCRQT 120 (290)
Q Consensus 93 ~--------~~d~~~~~~l~-~--~~d~~kIgs~~~~n~ 120 (290)
= .++++.+..|. + .+-.+|-.+.++.++
T Consensus 132 Yn~P~~tg~~l~~~~~~~La~~~pnivgiKds~gd~~~~ 170 (294)
T 2ehh_A 132 YNIPSRTCVEISVDTMFKLASECENIVASKESTPNMDRI 170 (294)
T ss_dssp EECHHHHSCCCCHHHHHHHHHHCTTEEEEEECCSCHHHH
T ss_pred EeCCcccCcCCCHHHHHHHHhhCCCEEEEEeCCCCHHHH
Confidence 1 23444444444 3 244556666655443
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=86.58 E-value=14 Score=33.70 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=50.3
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c---CCCEEEeCCCCCCCCCCC
Q 022892 131 KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A---NCPVVADVTHSLQQPAGK 206 (290)
Q Consensus 131 ~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~---~~pV~~D~sHs~~~~~~~ 206 (290)
..|||.|+.- +.+|+..|++.....|-+ ++-..+ +|...-..+..+..|++ . +.+|++=.
T Consensus 176 lKVIlEt~~L-t~eei~~A~~ia~eaGAD---fVKTST--Gf~~~GAT~edv~lmr~~v~~~g~~v~VKA---------- 239 (288)
T 3oa3_A 176 LKVILETSQL-TADEIIAGCVLSSLAGAD---YVKTST--GFNGPGASIENVSLMSAVCDSLQSETRVKA---------- 239 (288)
T ss_dssp EEEECCGGGC-CHHHHHHHHHHHHHTTCS---EEECCC--SSSSCCCCHHHHHHHHHHHHHSSSCCEEEE----------
T ss_pred ceEEEECCCC-CHHHHHHHHHHHHHcCCC---EEEcCC--CCCCCCCCHHHHHHHHHHHHHhCCCceEEE----------
Confidence 6789999987 999999999988888863 233332 33322234556677776 3 55555522
Q ss_pred ccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 207 KLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
++|.|.. .-+++-+.+||+
T Consensus 240 --------AGGIrt~--edAl~mi~aGA~ 258 (288)
T 3oa3_A 240 --------SGGIRTI--EDCVKMVRAGAE 258 (288)
T ss_dssp --------ESSCCSH--HHHHHHHHTTCS
T ss_pred --------eCCCCCH--HHHHHHHHcCCc
Confidence 2354443 345666788997
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=86.57 E-value=2 Score=39.54 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=55.4
Q ss_pred HHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 83 KIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 83 ~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
++++|+++. .+.+.+ .+ .+|++-|..-.-...++..++.+.||+|++.+.++.+++|....++..++.|
T Consensus 46 a~~~g~~~~------~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g 116 (359)
T 3e18_A 46 AAQKGLKIY------ESYEAVLADEKVDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVN 116 (359)
T ss_dssp HHTTTCCBC------SCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHT
T ss_pred HHhcCCcee------CCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhC
Confidence 467888643 244444 43 6999999999999999999999999999999999999999998887665554
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=86.54 E-value=4.9 Score=36.77 Aligned_cols=70 Identities=10% Similarity=-0.040 Sum_probs=55.1
Q ss_pred HHHHhcCCcEEEeecCcccHHHHhh-hcceecc-c----C--CccCCHHHHHHHH-hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 81 KVKIAYDIPIVTDVHETVQCEEVGK-VADIIQI-P----A--FLCRQTDLLVAAA-KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 81 ~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kI-g----s--~~~~n~~lL~~~a-~~~~PVilstG~~~tl~e~~~Ave 151 (290)
+.+++.|++++..+.+.+.+..+.+ .+|++.+ | . +...+..++.++. ..+.||+..-|.. +.+++..++.
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~-~~~dv~~al~ 196 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIA-DGRGMAAAFA 196 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCC-SHHHHHHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHcCCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCC-CHHHHHHHHH
Confidence 4445679999999999888888777 5999988 2 1 2346778888865 4689999999999 9999988765
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=86.38 E-value=6.5 Score=35.35 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=57.7
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.++. |...+++.|++..+ +|+|++.-. .|+ |.++. +++ +...+++++..++|++-
T Consensus 67 ~gr~pviaGvg~~-~t~~ai~la~~a~~----~Gadavlv~--------~P~-y~~~s-~~~l~~~f~~ia~a~~lPiil 131 (289)
T 2yxg_A 67 NGRVQVIAGAGSN-CTEEAIELSVFAED----VGADAVLSI--------TPY-YNKPT-QEGLRKHFGKVAESINLPIVL 131 (289)
T ss_dssp TTSSEEEEECCCS-SHHHHHHHHHHHHH----HTCSEEEEE--------CCC-SSCCC-HHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCcEEEeCCCC-CHHHHHHHHHHHHh----cCCCEEEEC--------CCC-CCCCC-HHHHHHHHHHHHHhcCCCEEE
Confidence 4578899999974 56666666666555 699987653 122 22222 344 55677888889999884
Q ss_pred e--------ecCcccHHHHh-h--hcceecccCCccCCHH
Q 022892 93 D--------VHETVQCEEVG-K--VADIIQIPAFLCRQTD 121 (290)
Q Consensus 93 ~--------~~d~~~~~~l~-~--~~d~~kIgs~~~~n~~ 121 (290)
= .++++.+..|. + .+-.+|-.+.++.+..
T Consensus 132 Yn~P~~tg~~l~~~~~~~La~~~pnivgiK~s~gd~~~~~ 171 (289)
T 2yxg_A 132 YNVPSRTAVNLEPKTVKLLAEEYSNISAVKEANPNLSQVS 171 (289)
T ss_dssp EECHHHHSCCCCHHHHHHHHHHCTTEEEEEECCSCTHHHH
T ss_pred EeCccccCcCCCHHHHHHHHHhCCCEEEEEeCCCCHHHHH
Confidence 1 23444455554 3 2556677777765543
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=86.31 E-value=1.4 Score=40.37 Aligned_cols=54 Identities=15% Similarity=-0.003 Sum_probs=46.6
Q ss_pred Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 103 VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 103 l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
+.+ .+|++-|..-.-.+.++..++.+.||+|++.+.++.|++|....++..++.
T Consensus 61 l~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 115 (349)
T 3i23_A 61 LTDPEIELITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEK 115 (349)
T ss_dssp HSCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred hcCCCCCEEEEeCCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHc
Confidence 444 599999999999999999999999999999999999999988887765544
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=86.29 E-value=2.2 Score=41.23 Aligned_cols=74 Identities=4% Similarity=-0.054 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCc---EEEeecCcccHHH-Hhh-hcceecccCCccCCHHHHHHHHhcC------CeEEEeCCCCCCHHHH
Q 022892 78 ILEKVKIAYDIP---IVTDVHETVQCEE-VGK-VADIIQIPAFLCRQTDLLVAAAKTG------KIINIKKGQFCASSVM 146 (290)
Q Consensus 78 ~L~~~~~~~Gi~---~~s~~~d~~~~~~-l~~-~~d~~kIgs~~~~n~~lL~~~a~~~------~PVilstG~~~tl~e~ 146 (290)
..+++++++|++ +.+ +.+. +++ .+|++-|...+-.+.++..++.+.| |+|++.+.++.+++|.
T Consensus 81 ~a~~~a~~~g~~~~~~~~------d~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea 154 (479)
T 2nvw_A 81 SSLQTIEQLQLKHATGFD------SLESFAQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQA 154 (479)
T ss_dssp HHHHHHHHTTCTTCEEES------CHHHHHHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHH
T ss_pred HHHHHHHHcCCCcceeeC------CHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHH
Confidence 455667888986 332 2334 443 6999999999988899988888889 9999999999999999
Q ss_pred HHHHHHHHHcC
Q 022892 147 VNSAEKVRLAG 157 (290)
Q Consensus 147 ~~Ave~i~~~G 157 (290)
...++..++.|
T Consensus 155 ~~l~~~a~~~g 165 (479)
T 2nvw_A 155 EELYSISQQRA 165 (479)
T ss_dssp HHHHHHHHTCT
T ss_pred HHHHHHHHHcC
Confidence 98888777665
|
| >2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=86.27 E-value=1.9 Score=43.28 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=80.7
Q ss_pred HHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC---CcEEEeecCcccHHHHhh---hcceecccCC
Q 022892 42 ISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD---IPIVTDVHETVQCEEVGK---VADIIQIPAF 115 (290)
Q Consensus 42 ~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G---i~~~s~~~d~~~~~~l~~---~~d~~kIgs~ 115 (290)
.+-+.|+|.|....-.. .+..+.+++++++.| +.+++-+-+++.++-+++ ..|.+-||-+
T Consensus 181 ~~l~~g~d~v~~sfV~~--------------a~dv~~~~~~l~~~~~~~~~iiakIE~~eav~nldeIl~~~DgImVarg 246 (587)
T 2e28_A 181 FGIRQGIDFIAASFVRR--------------ASDVLEIRELLEAHDALHIQIIAKIENEEGVANIDEILEAADGLMVARG 246 (587)
T ss_dssp HHHHHTCSEEEESSCCS--------------HHHHHHHHHHHHHTTCTTSEEEEEECSHHHHHTHHHHHHHSSEEEEEHH
T ss_pred HHHHcCCCEEEECCCCC--------------HHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCEEEEcCc
Confidence 33446999998754331 578888999998775 789999999888776665 5899888887
Q ss_pred cc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 116 LC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 116 ~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
|+ -|..+++.+-+.||||++-|-|- .|=.|+-+.+..+.. |.+-++|---+..-.||.
T Consensus 247 DLgvei~~~~v~~~qk~ii~~~~~~gkpvi~ATQmLeSMi~~p~PTRAE~sDvanav~d-G~DavMLSgETA~G~yPv 323 (587)
T 2e28_A 247 DLGVEIPAEEVPLIQKLLIKKSNMLGKPVITATQMLDSMQRNPRPTRAEASDVANAIFD-GTDAVMLSGETAAGQYPV 323 (587)
T ss_dssp HHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHH-TCSEEEESHHHHTCSCHH
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEechhhHhhccCCCccHHHHhccchhhhh-CcceeeecccccCCCCHH
Confidence 66 23445666778899999988764 245777777776653 555455422222223764
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=86.26 E-value=22 Score=33.28 Aligned_cols=77 Identities=13% Similarity=-0.028 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcc
Q 022892 142 ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 220 (290)
Q Consensus 142 tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~ 220 (290)
+.++....++.+...|-.-|++..+.....++.. ++..+..+|+ +++||+....-+
T Consensus 253 ~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~--~~~~~~~ik~~~~iPvi~~Ggi~--------------------- 309 (377)
T 2r14_A 253 PEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITY--PEGFREQMRQRFKGGLIYCGNYD--------------------- 309 (377)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCC------CC--CTTHHHHHHHHCCSEEEEESSCC---------------------
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCcc--hHHHHHHHHHHCCCCEEEECCCC---------------------
Confidence 5678888888888888766665443211112211 4566778888 889998732221
Q ss_pred cHHHHHHHHHHcC-CCEEEEeeeC
Q 022892 221 LIPCIARTAIAVG-VDGVFMEVHD 243 (290)
Q Consensus 221 ~~~~~a~aAva~G-A~G~~IEkH~ 243 (290)
+..+..+++.| ||++++=+-+
T Consensus 310 --~~~a~~~l~~g~aD~V~igR~~ 331 (377)
T 2r14_A 310 --AGRAQARLDDNTADAVAFGRPF 331 (377)
T ss_dssp --HHHHHHHHHTTSCSEEEESHHH
T ss_pred --HHHHHHHHHCCCceEEeecHHH
Confidence 56677788887 9998887765
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=86.08 E-value=4.6 Score=36.99 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=42.1
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.++. |...+++.+++. +++|+|++.-. .|+.| .+. +++ +...+++++..++|++-
T Consensus 90 ~grvpViaGvg~~-st~eai~la~~A----~~~Gadavlv~--------~P~y~-~~s-~~~l~~~f~~va~a~~lPiil 154 (314)
T 3qze_A 90 KGRIPVIAGTGAN-STREAVALTEAA----KSGGADACLLV--------TPYYN-KPT-QEGMYQHFRHIAEAVAIPQIL 154 (314)
T ss_dssp TTSSCEEEECCCS-SHHHHHHHHHHH----HHTTCSEEEEE--------CCCSS-CCC-HHHHHHHHHHHHHHSCSCEEE
T ss_pred CCCCcEEEeCCCc-CHHHHHHHHHHH----HHcCCCEEEEc--------CCCCC-CCC-HHHHHHHHHHHHHhcCCCEEE
Confidence 4567899999874 566666666654 45799987753 12212 222 344 55677888888999884
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=85.94 E-value=8.6 Score=34.89 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=54.2
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.++. |....++.+++.. ++|+|++.-. .|+ |..+. +++ +...+++++..++|++-
T Consensus 83 ~grvpviaGvg~~-st~~ai~la~~A~----~~Gadavlv~--------~P~-y~~~~-~~~l~~~f~~ia~a~~lPiil 147 (304)
T 3cpr_A 83 GDRAKLIAGVGTN-NTRTSVELAEAAA----SAGADGLLVV--------TPY-YSKPS-QEGLLAHFGAIAAATEVPICL 147 (304)
T ss_dssp TTTSEEEEECCCS-CHHHHHHHHHHHH----HTTCSEEEEE--------CCC-SSCCC-HHHHHHHHHHHHHHCCSCEEE
T ss_pred CCCCcEEecCCCC-CHHHHHHHHHHHH----hcCCCEEEEC--------CCC-CCCCC-HHHHHHHHHHHHHhcCCCEEE
Confidence 4577899999974 5666666666554 4799987653 122 22222 344 55677888888999874
Q ss_pred e--------ecCcccHHHHhh--hcceecccCCccCCH
Q 022892 93 D--------VHETVQCEEVGK--VADIIQIPAFLCRQT 120 (290)
Q Consensus 93 ~--------~~d~~~~~~l~~--~~d~~kIgs~~~~n~ 120 (290)
= .++++.+..|.+ .+-.+|-.++++.++
T Consensus 148 Yn~P~~tg~~l~~~~~~~La~~pnIvgiKdssgd~~~~ 185 (304)
T 3cpr_A 148 YDIPGRSGIPIESDTMRRLSELPTILAVXDAKGDLVAA 185 (304)
T ss_dssp EECHHHHSSCCCHHHHHHHTTSTTEEEEEECSCCHHHH
T ss_pred EeCccccCcCCCHHHHHHHHcCCCEEEEecCCCCHHHH
Confidence 1 133333434433 244556666655443
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=85.90 E-value=1.9 Score=39.01 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=53.9
Q ss_pred HHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 83 KIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 83 ~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
++++|++-.. .+.+.+ .+ .+|++-|....-...++..++.+.||+|++.+.++.+++|....++..++.|
T Consensus 47 a~~~~~~~~~-----~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~ 118 (329)
T 3evn_A 47 ANKYHLPKAY-----DKLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCN 118 (329)
T ss_dssp --CCCCSCEE-----SCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTT
T ss_pred HHHcCCCccc-----CCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcC
Confidence 4566775221 233444 33 6999999999999999999999999999999999999999999888777654
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=85.84 E-value=4.9 Score=36.45 Aligned_cols=64 Identities=17% Similarity=0.335 Sum_probs=41.4
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.++. |...+++.|++. +++|+|++.-. .|+ |..+. +++ +...+++++..++|++-
T Consensus 79 ~grvpViaGvg~~-~t~~ai~la~~A----~~~Gadavlv~--------~P~-y~~~s-~~~l~~~f~~va~a~~lPiil 143 (301)
T 1xky_A 79 DKRVPVIAGTGSN-NTHASIDLTKKA----TEVGVDAVMLV--------APY-YNKPS-QEGMYQHFKAIAESTPLPVML 143 (301)
T ss_dssp TTSSCEEEECCCS-CHHHHHHHHHHH----HHTTCSEEEEE--------CCC-SSCCC-HHHHHHHHHHHHHTCSSCEEE
T ss_pred CCCceEEeCCCCC-CHHHHHHHHHHH----HhcCCCEEEEc--------CCC-CCCCC-HHHHHHHHHHHHHhcCCCEEE
Confidence 4567799999974 566666666554 45799987653 122 22222 344 55677888888999874
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=85.76 E-value=13 Score=32.46 Aligned_cols=161 Identities=14% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecC----cccHHHHhhhcc
Q 022892 33 MRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE----TVQCEEVGKVAD 108 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d----~~~~~~l~~~~d 108 (290)
.+--+++.+.+.+.|+++|.-. ...++..++..+..++.+.+.+-- ...---+.+.-+
T Consensus 18 ~~~i~~l~~~a~~~~~~aVcv~------------------p~~v~~~~~~l~~~~v~v~~vigFP~G~~~~~~k~~e~~~ 79 (220)
T 1ub3_A 18 LEEVAKAAEEALEYGFYGLCIP------------------PSYVAWVRARYPHAPFRLVTVVGFPLGYQEKEVKALEAAL 79 (220)
T ss_dssp HHHHHHHHHHHHHHTCSEEECC------------------GGGHHHHHHHCTTCSSEEEEEESTTTCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEC------------------HHHHHHHHHHhCCCCceEEEEecCCCCCCchHHHHHHHHH
Q ss_pred eecccCCcc------------------CCHHHHHHHH-hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 109 IIQIPAFLC------------------RQTDLLVAAA-KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 109 ~~kIgs~~~------------------~n~~lL~~~a-~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
.++-|+.++ .++.-+++++ +...|||+.|+.- +.+++..|++.....|-+-|= ++
T Consensus 80 Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l-~~e~i~~a~~ia~eaGADfVK-----Ts 153 (220)
T 1ub3_A 80 ACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYF-SPEEIARLAEAAIRGGADFLK-----TS 153 (220)
T ss_dssp HHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGS-CHHHHHHHHHHHHHHTCSEEE-----CC
T ss_pred HHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCC-CHHHHHHHHHHHHHhCCCEEE-----eC
Q ss_pred CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC--EE
Q 022892 170 FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD--GV 237 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~--G~ 237 (290)
++|...-..+..+..|++ .+.+|++ ..++|.|.. .-++.-+.+||+ |.
T Consensus 154 TGf~~~gat~~dv~~m~~~vg~~v~V------------------kaaGGirt~--~~al~~i~aGa~RiG~ 204 (220)
T 1ub3_A 154 TGFGPRGASLEDVALLVRVAQGRAQV------------------KAAGGIRDR--ETALRMLKAGASRLGT 204 (220)
T ss_dssp CSSSSCCCCHHHHHHHHHHHTTSSEE------------------EEESSCCSH--HHHHHHHHTTCSEEEE
T ss_pred CCCCCCCCCHHHHHHHHHhhCCCCeE------------------EEECCCCCH--HHHHHHHHCCCcccch
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=85.76 E-value=2.7 Score=37.81 Aligned_cols=75 Identities=13% Similarity=0.025 Sum_probs=56.4
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
++++++++|++.. ..+.. +.+.+.+|++-|....-...++..++.+.||+|++.+.++.+++|....++..++.|
T Consensus 40 ~~~~a~~~g~~~~--~~~~~--~~l~~~~D~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g 114 (323)
T 1xea_A 40 LGTLATRYRVSAT--CTDYR--DVLQYGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHH 114 (323)
T ss_dssp HHHHHHHTTCCCC--CSSTT--GGGGGCCSEEEECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcc--ccCHH--HHhhcCCCEEEEECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcC
Confidence 4556778888631 22222 234346999999999888888888888899999999999889999888887666554
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=85.71 E-value=13 Score=33.58 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=40.7
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEE
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIV 91 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~ 91 (290)
++-||+|.++. |...+++.+++..+ +|+|++... .|+.| ++.-+.-+...+++++..++|++
T Consensus 77 rvpviaGvg~~-~t~~ai~la~~a~~----~Gadavlv~--------~P~y~-~~s~~~l~~~f~~va~a~~lPii 138 (301)
T 3m5v_A 77 KVKVLAGAGSN-ATHEAVGLAKFAKE----HGADGILSV--------APYYN-KPTQQGLYEHYKAIAQSVDIPVL 138 (301)
T ss_dssp SCEEEEECCCS-SHHHHHHHHHHHHH----TTCSEEEEE--------CCCSS-CCCHHHHHHHHHHHHHHCSSCEE
T ss_pred CCeEEEeCCCC-CHHHHHHHHHHHHH----cCCCEEEEc--------CCCCC-CCCHHHHHHHHHHHHHhCCCCEE
Confidence 78899999873 56666666665544 799987653 12212 22212335567788888899988
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=85.68 E-value=3.7 Score=37.96 Aligned_cols=181 Identities=13% Similarity=0.069 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCC-ChhHHHHHHHHHHHhcCCcEEEeec----CcccHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGP-GMVEGLKILEKVKIAYDIPIVTDVH----ETVQCEE 102 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~-~~~~~l~~L~~~~~~~Gi~~~s~~~----d~~~~~~ 102 (290)
+.+..+++|++|.+ +|++.|=-.+|. .|.. .|++. .+ ..++.++++.+..+.++..=.. .++.++.
T Consensus 22 ~~~~k~~ia~~L~~----aGv~~IEvg~~~-~p~~---~f~~~~~~-~~~e~l~~i~~~~~~~~~~L~r~~~~~~~dv~~ 92 (320)
T 3dxi_A 22 NSKIVDAYILAMNE----LPIDYLEVGYRN-KPSK---EYMGKFGY-TPVSVLKHLRNISTKKIAIMLNEKNTTPEDLNH 92 (320)
T ss_dssp CHHHHHHHHHHHHT----TTCCEEEEEECC-SCCS---SCCCHHHH-CCHHHHHHHHHHCCSEEEEEEEGGGCCGGGHHH
T ss_pred CHHHHHHHHHHHHH----hCCCEEEEeccc-CCcc---cccccccc-ChHHHHHHHhhccCCeEEEEecCCCCChhhHHH
Confidence 56778888888877 699987766653 1321 12210 01 0133344433345665544321 2334544
Q ss_pred H---h-hhcceecccCCccCCHH----HHHHHHhcCCeEEEeC----CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC
Q 022892 103 V---G-KVADIIQIPAFLCRQTD----LLVAAAKTGKIINIKK----GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF 170 (290)
Q Consensus 103 l---~-~~~d~~kIgs~~~~n~~----lL~~~a~~~~PVilst----G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~ 170 (290)
+ . ..+|.+-|.. .+.|.+ .++++.+.|+.|.+.- +.. +.++...-+..+ ..|...|.|+.....
T Consensus 93 ~~~a~~~Gvd~~ri~~-~~~nle~~~~~v~~ak~~G~~v~~~~~~~~~~~-~~~~~l~~~~~~-~~G~~~i~l~Dt~G~- 168 (320)
T 3dxi_A 93 LLLPIIGLVDMIRIAI-DPQNIDRAIVLAKAIKTMGFEVGFNVMYMSKWA-EMNGFLSKLKAI-DKIADLFCMVDSFGG- 168 (320)
T ss_dssp HHGGGTTTCSEEEEEE-CGGGHHHHHHHHHHHHTTTCEEEEEECCTTTGG-GSTTSGGGGGGG-TTTCSEEEEECTTSC-
T ss_pred HHHhhhcCCCEEEEEe-cHHHHHHHHHHHHHHHHCCCEEEEEEEeCCCCC-CHHHHHHHHHHh-hCCCCEEEECcccCC-
Confidence 3 1 2588887775 555554 3344556788887653 222 222222222222 457666666654432
Q ss_pred CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 171 GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 171 ~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
..|. .+ ..-+..+++ +++||.+ +.|.. .| +...-+.+|+.+||+ .|+.-+.
T Consensus 169 ~~P~-~~-~~lv~~l~~~~~~~i~~-H~Hn~---------------~G---~a~an~laA~~aGa~--~vd~si~ 220 (320)
T 3dxi_A 169 ITPK-EV-KNLLKEVRKYTHVPVGF-HGHDN---------------LQ---LGLINSITAIDDGID--FIDATIT 220 (320)
T ss_dssp CCHH-HH-HHHHHHHHHHCCSCEEE-ECBCT---------------TS---CHHHHHHHHHHTTCS--EEEEBGG
T ss_pred CCHH-HH-HHHHHHHHHhCCCeEEE-EeCCC---------------Cc---cHHHHHHHHHHhCCC--EEEEecc
Confidence 1222 12 145666777 7899999 77764 12 224557788999998 8887654
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=85.59 E-value=2.4 Score=37.57 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecc
Q 022892 33 MRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQI 112 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kI 112 (290)
.+.++.|.+ +|+|+|..+. . .|..++.-++.++++.+ ..+|++-.++....+ ...+|.+-|
T Consensus 23 ~~~~~~l~~----~GaD~IelG~-S----------~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i---~~gvDg~ii 83 (234)
T 2f6u_A 23 DEIIKAVAD----SGTDAVMISG-T----------QNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNV---VYDVDYLFV 83 (234)
T ss_dssp HHHHHHHHT----TTCSEEEECC-C----------TTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCC---CCCSSEEEE
T ss_pred HHHHHHHHH----cCCCEEEECC-C----------CCCCHHHHHHHHHHhcC-CCCCEEEecCCcchh---hcCCCEEEE
Confidence 444555544 6999998874 1 23334556777777765 899999999885444 446888877
Q ss_pred cCCcc
Q 022892 113 PAFLC 117 (290)
Q Consensus 113 gs~~~ 117 (290)
++=-.
T Consensus 84 pdLp~ 88 (234)
T 2f6u_A 84 PTVLN 88 (234)
T ss_dssp EEETT
T ss_pred cccCC
Confidence 76544
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=85.46 E-value=1.7 Score=39.40 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=49.6
Q ss_pred cHHH-Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 99 QCEE-VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 99 ~~~~-l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
+.+. +.+ .+|++-|..-+-.+.++..++.+.||+|++.+.++.+++|....++..++.|
T Consensus 57 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g 117 (336)
T 2p2s_A 57 SAEQLITDASIDLIACAVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETG 117 (336)
T ss_dssp CHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHC
T ss_pred CHHHHhhCCCCCEEEEeCChhhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 3444 444 6999999999999999999999999999999999999999988888776654
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=85.44 E-value=20 Score=36.66 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCc
Q 022892 142 ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLR 219 (290)
Q Consensus 142 tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~ 219 (290)
+++.+.+.++.+.+.|...|.|+.-... ..|.. + ..-+..+++ + ++||++ +.|-. .
T Consensus 259 ~~e~~~~~a~~l~~~Ga~~I~l~DT~G~-~~P~~-v-~~lV~~lk~~~p~~~I~~-H~Hnd------------------~ 316 (718)
T 3bg3_A 259 SLQYYMGLAEELVRAGTHILCIKDMAGL-LKPTA-C-TMLVSSLRDRFPDLPLHI-HTHDT------------------S 316 (718)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECTTSC-CCHHH-H-HHHHHHHHHHSTTCCEEE-ECCCT------------------T
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCC-cCHHH-H-HHHHHHHHHhCCCCeEEE-EECCC------------------c
Confidence 7899999999999999987777776542 12221 1 245667777 7 799999 88864 2
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 220 ELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 220 ~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.+...-+.+|+.+||+ .|+.-+.
T Consensus 317 GlAvANslaAveAGa~--~VD~ti~ 339 (718)
T 3bg3_A 317 GAGVAAMLACAQAGAD--VVDVAAD 339 (718)
T ss_dssp SCHHHHHHHHHHTTCS--EEEEBCG
T ss_pred cHHHHHHHHHHHhCCC--EEEecCc
Confidence 2335567789999998 8887654
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=85.42 E-value=14 Score=32.24 Aligned_cols=121 Identities=14% Similarity=0.076 Sum_probs=69.2
Q ss_pred cccHHHHhh-hccee--cccCCccCC---H----HHHHHHHhcCCeEEEeCC---CC----CCHHHHHHHHHHHHHcCCC
Q 022892 97 TVQCEEVGK-VADII--QIPAFLCRQ---T----DLLVAAAKTGKIINIKKG---QF----CASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 97 ~~~~~~l~~-~~d~~--kIgs~~~~n---~----~lL~~~a~~~~PVilstG---~~----~tl~e~~~Ave~i~~~Gn~ 159 (290)
..+++.+.+ .++++ ++-...... . .+.+.+.+.+.|+++..+ .. .+.+++..+++.....|-+
T Consensus 102 ~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad 181 (273)
T 2qjg_A 102 VTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGAD 181 (273)
T ss_dssp CSCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCC
Confidence 455665554 57777 432222221 1 223334456999999762 11 3677888887777778865
Q ss_pred cEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 160 NVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 160 ~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
++.++ |+ .|+..+..+++ .++||+.-..-. ....+........+...||+|+.
T Consensus 182 -~i~~~------~~---~~~~~l~~i~~~~~ipvva~GGi~----------------~~~~~~~~~~~~~~~~~Ga~gv~ 235 (273)
T 2qjg_A 182 -IVKTS------YT---GDIDSFRDVVKGCPAPVVVAGGPK----------------TNTDEEFLQMIKDAMEAGAAGVA 235 (273)
T ss_dssp -EEEEC------CC---SSHHHHHHHHHHCSSCEEEECCSC----------------CSSHHHHHHHHHHHHHHTCSEEE
T ss_pred -EEEEC------CC---CCHHHHHHHHHhCCCCEEEEeCCC----------------CCCHHHHHHHHHHHHHcCCcEEE
Confidence 44333 22 47778888877 789997611110 01112222334456789999998
Q ss_pred EeeeC
Q 022892 239 MEVHD 243 (290)
Q Consensus 239 IEkH~ 243 (290)
+=+.+
T Consensus 236 vg~~i 240 (273)
T 2qjg_A 236 VGRNI 240 (273)
T ss_dssp CCHHH
T ss_pred eeHHh
Confidence 86655
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.39 E-value=4.9 Score=36.83 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=42.2
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
++++-||||.++. |...+++.|++.. ++|+|++... .|+.| ++.-++-+...+++++..++|++-
T Consensus 91 ~grvpViaGvg~~-~t~~ai~la~~A~----~~Gadavlv~--------~P~y~-~~s~~~l~~~f~~va~a~~lPiil 155 (315)
T 3na8_A 91 AHRVPTIVSVSDL-TTAKTVRRAQFAE----SLGAEAVMVL--------PISYW-KLNEAEVFQHYRAVGEAIGVPVML 155 (315)
T ss_dssp TTSSCBEEECCCS-SHHHHHHHHHHHH----HTTCSEEEEC--------CCCSS-CCCHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCcEEEecCCC-CHHHHHHHHHHHH----hcCCCEEEEC--------CCCCC-CCCHHHHHHHHHHHHHhCCCcEEE
Confidence 4567899999863 5666666665554 4799997753 22222 233133455678888889999883
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=85.37 E-value=5.4 Score=36.53 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=55.2
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||||.++. |...+++.+++.. ++|+|++... .|| |..+. +++ +...+++++..++|++-
T Consensus 89 ~grvpViaGvg~~-st~~ai~la~~A~----~~Gadavlv~--------~P~-y~~~~-~~~l~~~f~~va~a~~lPiil 153 (315)
T 3si9_A 89 AKRVPVVAGAGSN-STSEAVELAKHAE----KAGADAVLVV--------TPY-YNRPN-QRGLYTHFSSIAKAISIPIII 153 (315)
T ss_dssp TTSSCBEEECCCS-SHHHHHHHHHHHH----HTTCSEEEEE--------CCC-SSCCC-HHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCcEEEeCCCC-CHHHHHHHHHHHH----hcCCCEEEEC--------CCC-CCCCC-HHHHHHHHHHHHHcCCCCEEE
Confidence 4567899999874 5666666666554 4799987653 122 22233 344 55677888888999884
Q ss_pred e--------ecCcccHHHHhh-h--cceecccCCccCCHH
Q 022892 93 D--------VHETVQCEEVGK-V--ADIIQIPAFLCRQTD 121 (290)
Q Consensus 93 ~--------~~d~~~~~~l~~-~--~d~~kIgs~~~~n~~ 121 (290)
= .++++.+..|.+ . +-.+|-.+.++.+..
T Consensus 154 Yn~P~~tg~~l~~~~~~~La~~~pnIvgiKdssgd~~~~~ 193 (315)
T 3si9_A 154 YNIPSRSVIDMAVETMRDLCRDFKNIIGVKDATGKIERAS 193 (315)
T ss_dssp EECHHHHSCCCCHHHHHHHHHHCTTEEEEEECSCCTHHHH
T ss_pred EeCchhhCCCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHH
Confidence 2 233344444443 2 445566666655443
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=85.28 E-value=5.3 Score=35.51 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=52.8
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCcc
Q 022892 130 GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKL 208 (290)
Q Consensus 130 ~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~ 208 (290)
..+|||.||.- +.+|+..|++.....|-+ ++...+-|.+. -..+..+..|++ .+.+|++=
T Consensus 144 ~lKVIlEt~~L-t~eei~~a~~ia~~aGAD---fVKTSTGf~~g--gAt~~dv~lmr~~vg~~v~VK------------- 204 (239)
T 3ngj_A 144 LTKVIIECCYL-TNEEKVEVCKRCVAAGAE---YVKTSTGFGTH--GATPEDVKLMKDTVGDKALVK------------- 204 (239)
T ss_dssp EEEEECCGGGS-CHHHHHHHHHHHHHHTCS---EEECCCSSSSC--CCCHHHHHHHHHHHGGGSEEE-------------
T ss_pred ceEEEEecCCC-CHHHHHHHHHHHHHHCcC---EEECCCCCCCC--CCCHHHHHHHHHhhCCCceEE-------------
Confidence 36899999985 999999999998888863 33443333222 245678888888 55555541
Q ss_pred CCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 209 DGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 209 ~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
.++|.|.. .-+.+-+.+||+
T Consensus 205 -----asGGIrt~--~da~~~i~aGA~ 224 (239)
T 3ngj_A 205 -----AAGGIRTF--DDAMKMINNGAS 224 (239)
T ss_dssp -----EESSCCSH--HHHHHHHHTTEE
T ss_pred -----EeCCCCCH--HHHHHHHHhccc
Confidence 12455544 345556788987
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=85.24 E-value=4.7 Score=37.94 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCC----CCCC---CCCCc--hhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCC
Q 022892 142 ASSVMVNSAEKVRLAGNPNVMVCERGTMF----GYND---LIVDP--RNLEWMREANCPVVADVTHSLQQPAGKKLDGGG 212 (290)
Q Consensus 142 tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~~---~~~dL--~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~ 212 (290)
+..+++.|++.+...|.+.+++.-..|.. .... +.++. ..+...++.+..|.|++--+-
T Consensus 85 ~~~di~~a~~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~------------ 152 (370)
T 3rmj_A 85 IERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDAL------------ 152 (370)
T ss_dssp SHHHHHHHHHHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGG------------
T ss_pred CHHHHHHHHHHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCC------------
Confidence 78999999998888888888887776621 1111 01111 123333445677777553220
Q ss_pred ccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 213 VASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 213 ~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
.-..+++..++.++..+||+-+ .++|-.-.+.|.++.++++.+++.
T Consensus 153 ---r~~~~~~~~~~~~~~~~Ga~~i----------~l~DT~G~~~P~~~~~lv~~l~~~ 198 (370)
T 3rmj_A 153 ---RSEIDFLAEICGAVIEAGATTI----------NIPDTVGYSIPYKTEEFFRELIAK 198 (370)
T ss_dssp ---GSCHHHHHHHHHHHHHHTCCEE----------EEECSSSCCCHHHHHHHHHHHHHH
T ss_pred ---ccCHHHHHHHHHHHHHcCCCEE----------EecCccCCcCHHHHHHHHHHHHHh
Confidence 0124677788889999999832 127888899999999999988764
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=85.00 E-value=17 Score=33.60 Aligned_cols=64 Identities=11% Similarity=0.229 Sum_probs=42.0
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||||.++. |...+++.|++..+ +|+|+|.-. .|+ |.++. +++ +...+++++..++|++-
T Consensus 98 ~grvpViaGvg~~-st~eai~la~~A~~----~Gadavlv~--------~P~-Y~~~s-~~~l~~~f~~VA~a~~lPiil 162 (343)
T 2v9d_A 98 DRRVPVLIGTGGT-NARETIELSQHAQQ----AGADGIVVI--------NPY-YWKVS-EANLIRYFEQVADSVTLPVML 162 (343)
T ss_dssp TTSSCEEEECCSS-CHHHHHHHHHHHHH----HTCSEEEEE--------CCS-SSCCC-HHHHHHHHHHHHHTCSSCEEE
T ss_pred CCCCcEEEecCCC-CHHHHHHHHHHHHh----cCCCEEEEC--------CCC-CCCCC-HHHHHHHHHHHHHhcCCCEEE
Confidence 4577899999974 66666766666555 699987653 122 21222 344 55677888888999874
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=84.90 E-value=21 Score=34.44 Aligned_cols=111 Identities=15% Similarity=0.060 Sum_probs=62.5
Q ss_pred hcceecccCCc--c-CCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-eecCC--------CC
Q 022892 106 VADIIQIPAFL--C-RQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-ERGTM--------FG 171 (290)
Q Consensus 106 ~~d~~kIgs~~--~-~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~-~~gs~--------~~ 171 (290)
.+|++-|.+.. . ...++++++.+. +.||+.++= . +.++...+. ..|-+-|.+. +.|+. .+
T Consensus 267 G~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v-~-t~~~a~~l~----~aGad~I~vg~~~G~~~~t~~~~~~g 340 (514)
T 1jcn_A 267 GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV-V-TAAQAKNLI----DAGVDGLRVGMGCGSICITQEVMACG 340 (514)
T ss_dssp TCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE-C-SHHHHHHHH----HHTCSEEEECSSCSCCBTTBCCCSCC
T ss_pred CCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc-c-hHHHHHHHH----HcCCCEEEECCCCCcccccccccCCC
Confidence 57888773332 2 124667777665 899998643 3 677765544 4676555551 11211 01
Q ss_pred CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCC
Q 022892 172 YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~ 245 (290)
.+. ..++..+..+++ .++||+.+..=.. ..-+..|+++||+++++=+-|.-
T Consensus 341 ~~~-~~~~~~~~~~~~~~~ipVia~GGI~~----------------------~~di~kala~GAd~V~iG~~~l~ 392 (514)
T 1jcn_A 341 RPQ-GTAVYKVAEYARRFGVPIIADGGIQT----------------------VGHVVKALALGASTVMMGSLLAA 392 (514)
T ss_dssp CCH-HHHHHHHHHHHGGGTCCEEEESCCCS----------------------HHHHHHHHHTTCSEEEESTTTTT
T ss_pred ccc-hhHHHHHHHHHhhCCCCEEEECCCCC----------------------HHHHHHHHHcCCCeeeECHHHHc
Confidence 110 112334445555 6899987532211 23344678899999999886644
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=84.74 E-value=5.5 Score=36.39 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=57.1
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCC----------CCChhHHHHHHHHHHHh
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFR----------GPGMVEGLKILEKVKIA 85 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~----------g~~~~~~l~~L~~~~~~ 85 (290)
..-|+||.|..+-.-+.-.+-+.|++ +|+..| +.| .+...++ +++ .+...++-+.|++
T Consensus 94 ~iPV~Agv~~~DP~~~~g~~Le~lk~----~Gf~Gv--~N~-----ptvglidG~fr~~LEE~gm~-~~~eve~I~~A~~ 161 (286)
T 2p10_A 94 HTPVLAGVNGTDPFMVMSTFLRELKE----IGFAGV--QNF-----PTVGLIDGLFRQNLEETGMS-YAQEVEMIAEAHK 161 (286)
T ss_dssp SSCEEEEECTTCTTCCHHHHHHHHHH----HTCCEE--EEC-----SCGGGCCHHHHHHHHHTTCC-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCcCCCcCHHHHHHHHHH----hCCceE--EEC-----CCcccccchhhhhHhhcCCC-HHHHHHHHHHHHH
Confidence 45688898887532222222266666 599888 433 3333222 333 2445567778899
Q ss_pred cCCcEEEeecCcccHHHHhh-hcceeccc
Q 022892 86 YDIPIVTDVHETVQCEEVGK-VADIIQIP 113 (290)
Q Consensus 86 ~Gi~~~s~~~d~~~~~~l~~-~~d~~kIg 113 (290)
+|+..+.-+|+++++..+.+ .+|++-+=
T Consensus 162 ~gL~Ti~~v~~~eeA~amA~agpDiI~~h 190 (286)
T 2p10_A 162 LDLLTTPYVFSPEDAVAMAKAGADILVCH 190 (286)
T ss_dssp TTCEECCEECSHHHHHHHHHHTCSEEEEE
T ss_pred CCCeEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999999988 68887653
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=84.69 E-value=16 Score=33.06 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=54.6
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.++. |...+++.+++..+ +|+|++.-. .|+ |..+. +++ +...+++++..++|++-
T Consensus 79 ~grvpViaGvg~~-st~~ai~la~~A~~----~Gadavlv~--------~P~-y~~~s-~~~l~~~f~~va~a~~lPiil 143 (306)
T 1o5k_A 79 DGKIPVIVGAGTN-STEKTLKLVKQAEK----LGANGVLVV--------TPY-YNKPT-QEGLYQHYKYISERTDLGIVV 143 (306)
T ss_dssp TTSSCEEEECCCS-CHHHHHHHHHHHHH----HTCSEEEEE--------CCC-SSCCC-HHHHHHHHHHHHTTCSSCEEE
T ss_pred CCCCeEEEcCCCc-cHHHHHHHHHHHHh----cCCCEEEEC--------CCC-CCCCC-HHHHHHHHHHHHHhCCCCEEE
Confidence 3567799999974 56666666665554 699987653 122 22223 344 55677888888999874
Q ss_pred e--------ecCcccHHHHh-h--hcceecccCCccCCH
Q 022892 93 D--------VHETVQCEEVG-K--VADIIQIPAFLCRQT 120 (290)
Q Consensus 93 ~--------~~d~~~~~~l~-~--~~d~~kIgs~~~~n~ 120 (290)
= .++++.+..|. + .+-.+|-.+.++.++
T Consensus 144 Yn~P~~tg~~l~~~~~~~La~~~pnIvgiKdssgd~~~~ 182 (306)
T 1o5k_A 144 YNVPGRTGVNVLPETAARIAADLKNVVGIXEANPDIDQI 182 (306)
T ss_dssp EECHHHHSCCCCHHHHHHHHHHCTTEEEEEECCCCHHHH
T ss_pred EeCccccCcCCCHHHHHHHHHhCCCEEEEeCCCCCHHHH
Confidence 1 13444444444 3 244566666665443
|
| >3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=84.59 E-value=11 Score=34.63 Aligned_cols=62 Identities=13% Similarity=0.036 Sum_probs=37.2
Q ss_pred HHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC--cEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEe
Q 022892 124 VAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNP--NVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVAD 195 (290)
Q Consensus 124 ~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~--~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D 195 (290)
+.+..+++||++-++-.-.-.+ .++++++.|.+ +++++||.-+ . ++.....+-+.|+-|+||
T Consensus 175 ~~A~~~glPViiH~r~g~~a~~---~l~iL~e~~~~~~~vvi~H~~~s--~-----~~e~a~~~l~~G~~i~~~ 238 (330)
T 3pnz_A 175 RAHHETKAPIHSHTEAGTMALE---QIEILKQENIPLEYLSIGHMDRN--L-----DPYYHKQVAKTGAFMSFD 238 (330)
T ss_dssp HHHHHHCCCEEEECGGGCCHHH---HHHHHHHTTCCGGGEEETTGGGS--C-----CHHHHHHHHTTTCEEEEC
T ss_pred HHHHHHCCeEEEeCCCCcChHH---HHHHHHHcCCCCCeEEEecCCCC--C-----CHHHHHHHHHcCcEEEEc
Confidence 4455789999999885311222 25667776654 6888999621 1 233333333357778885
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=84.53 E-value=23 Score=32.05 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=83.1
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc------------CCHHHH---HHHHh-cCC-eEEEeCC
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC------------RQTDLL---VAAAK-TGK-IINIKKG 138 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~------------~n~~lL---~~~a~-~~~-PVilstG 138 (290)
..|++...+-...++-++||..++..+++ .+|++.+|+... +-.+++ +.+++ .+. ||+.-++
T Consensus 7 ~~lr~~k~~g~~i~~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~p 86 (275)
T 1o66_A 7 NTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLP 86 (275)
T ss_dssp HHHHHHHHHTCCEEEEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECC
T ss_pred HHHHHHHhCCCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECC
Confidence 44666666666778889999999999998 699999885421 222333 44443 443 6778877
Q ss_pred CCC---CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccC
Q 022892 139 QFC---ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 139 ~~~---tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
... ++++....+..+...|- +-+=+|-+. + -...|..+.+.++||+..---+.|+... -|+-.-
T Consensus 87 fgsy~~s~~~a~~na~rl~kaGa-~aVklEdg~------e--~~~~I~al~~agIpV~gHiGLtPQs~~~----~ggf~v 153 (275)
T 1o66_A 87 FGAYQQSKEQAFAAAAELMAAGA-HMVKLEGGV------W--MAETTEFLQMRGIPVCAHIGLTPQSVFA----FGGYKV 153 (275)
T ss_dssp TTSSSSCHHHHHHHHHHHHHTTC-SEEEEECSG------G--GHHHHHHHHHTTCCEEEEEESCGGGTTC----------
T ss_pred CCCccCCHHHHHHHHHHHHHcCC-cEEEECCcH------H--HHHHHHHHHHcCCCeEeeeccCceeecc----cCCeEE
Confidence 632 46665544444444665 444556542 1 1235555655789986311111111000 000000
Q ss_pred CCC---cccHHHHHHHHHHcCCCEEEEee
Q 022892 216 GGL---RELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 216 ~g~---~~~~~~~a~aAva~GA~G~~IEk 241 (290)
-|+ .+.+..=+++-..+||+++++|.
T Consensus 154 ~grt~~a~~~i~rA~a~~eAGA~~ivlE~ 182 (275)
T 1o66_A 154 QGRGGKAQALLNDAKAHDDAGAAVVLMEC 182 (275)
T ss_dssp -----CHHHHHHHHHHHHHTTCSEEEEES
T ss_pred EeChHHHHHHHHHHHHHHHcCCcEEEEec
Confidence 111 12223334455678999999997
|
| >1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A | Back alignment and structure |
|---|
Probab=84.40 E-value=6.3 Score=38.43 Aligned_cols=124 Identities=14% Similarity=0.115 Sum_probs=79.7
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc---CCcEEEeecCcccHHHHhh---hcceecccCCc
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY---DIPIVTDVHETVQCEEVGK---VADIIQIPAFL 116 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~---Gi~~~s~~~d~~~~~~l~~---~~d~~kIgs~~ 116 (290)
+.+.|+|.|....-.. .+.+..++++.++. .+.+++-+-.++.++-+.+ ..|.+-||.+|
T Consensus 181 ~l~~gvD~I~lsfV~s--------------aeDv~~~~~~l~~~~~~~i~IiakIEt~eav~nldeI~~~sDgImVargD 246 (470)
T 1e0t_A 181 GCEQGVDFVAASFIRK--------------RSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGD 246 (470)
T ss_dssp HHHHTCSEEEESSCCS--------------HHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSEEEEEHHH
T ss_pred HHHcCCCEEEECCCCC--------------HHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHHCCEEEECchH
Confidence 3346999988753221 47788899998776 5899999988887766655 58999998887
Q ss_pred c-----------CCHHHHHHHHhcCCeEEEeCCCCC--------CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC
Q 022892 117 C-----------RQTDLLVAAAKTGKIINIKKGQFC--------ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 117 ~-----------~n~~lL~~~a~~~~PVilstG~~~--------tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~ 177 (290)
+ -+..+++++-..||||+.-|-|-- |=.|+-+.+..+. .|.+-++|---+..-.||.
T Consensus 247 Lgveig~e~v~~~qk~ii~~araaGkpvI~ATQMLeSMi~~p~PTRAEvsDVanAV~-dG~DavMLSgETA~G~yPv--- 322 (470)
T 1e0t_A 247 LGVEIPVEEVIFAQKMMIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVANAIL-DGTDAVMLSGESAKGKYPL--- 322 (470)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHTCEEEEECC---------CCCHHHHHHHHHHHH-HTCSEEEECCC------CH---
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHcCCCEEEechhhHhhccCCCccHHHHhhhhHhhh-cCccEEEecccccCCCCHH---
Confidence 6 233456667778999999887642 4467777777665 3665555522222223775
Q ss_pred CchhHHHHH
Q 022892 178 DPRNLEWMR 186 (290)
Q Consensus 178 dL~~i~~lk 186 (290)
.++.+|.
T Consensus 323 --eaV~~m~ 329 (470)
T 1e0t_A 323 --EAVSIMA 329 (470)
T ss_dssp --HHHHHHH
T ss_pred --HHHHHHH
Confidence 4555553
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=84.35 E-value=20 Score=32.91 Aligned_cols=88 Identities=14% Similarity=0.142 Sum_probs=53.1
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||||.++. |...+++.|++..+ +|+|+|.-. .|+ |.++. +++ +...+++++..++|++-
T Consensus 101 ~grvpViaGvg~~-st~eai~la~~A~~----~Gadavlv~--------~P~-Y~~~s-~~~l~~~f~~VA~a~~lPiil 165 (332)
T 2r8w_A 101 RGRRTLMAGIGAL-RTDEAVALAKDAEA----AGADALLLA--------PVS-YTPLT-QEEAYHHFAAVAGATALPLAI 165 (332)
T ss_dssp TTSSEEEEEECCS-SHHHHHHHHHHHHH----HTCSEEEEC--------CCC-SSCCC-HHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCcEEEecCCC-CHHHHHHHHHHHHh----cCCCEEEEC--------CCC-CCCCC-HHHHHHHHHHHHHhcCCCEEE
Confidence 4578899999974 56666666665544 699987653 122 22233 344 55677888888999884
Q ss_pred e--------ecCcccHHHHhh--hcceecccCCc
Q 022892 93 D--------VHETVQCEEVGK--VADIIQIPAFL 116 (290)
Q Consensus 93 ~--------~~d~~~~~~l~~--~~d~~kIgs~~ 116 (290)
= .++++.+..|.+ .+-.+|-++++
T Consensus 166 Yn~P~~tg~~l~~e~~~~La~~pnIvgiKdssgd 199 (332)
T 2r8w_A 166 YNNPTTTRFTFSDELLVRLAYIPNIRAIKMPLPA 199 (332)
T ss_dssp ECCHHHHCCCCCHHHHHHHHTSTTEEEEEECCCT
T ss_pred EeCccccCcCCCHHHHHHHHcCCCEEEEEeCCCC
Confidence 1 133344444443 24456666665
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=84.33 E-value=9.5 Score=35.21 Aligned_cols=92 Identities=12% Similarity=-0.027 Sum_probs=60.7
Q ss_pred CCeEEEeCCC------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC---CCCCCCCchhHHHHHh-cCCCEEEeCCCC
Q 022892 130 GKIINIKKGQ------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFG---YNDLIVDPRNLEWMRE-ANCPVVADVTHS 199 (290)
Q Consensus 130 ~~PVilstG~------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~---y~~~~~dL~~i~~lk~-~~~pV~~D~sHs 199 (290)
++||.++-.. ..+++|....++.+...|-.-|++...+.... +.....++..+..+|+ +++||+....-.
T Consensus 219 d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~ 298 (349)
T 3hgj_A 219 ELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLIT 298 (349)
T ss_dssp TSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCC
T ss_pred CceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCC
Confidence 6799998765 23789999999999888866555543222110 1112246667788888 899998732211
Q ss_pred CCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CCEEEEeeeC
Q 022892 200 LQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVHD 243 (290)
Q Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G-A~G~~IEkH~ 243 (290)
. +..+..+++.| ||++++=+.+
T Consensus 299 -----------------t-----~e~a~~~l~~G~aD~V~iGR~~ 321 (349)
T 3hgj_A 299 -----------------T-----PEQAETLLQAGSADLVLLGRVL 321 (349)
T ss_dssp -----------------C-----HHHHHHHHHTTSCSEEEESTHH
T ss_pred -----------------C-----HHHHHHHHHCCCceEEEecHHH
Confidence 1 55677788888 9988877654
|
| >3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A | Back alignment and structure |
|---|
Probab=84.33 E-value=1.7 Score=42.84 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=81.4
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc--CCcEEEeecCcccHHHHhh---hcceecccCC
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY--DIPIVTDVHETVQCEEVGK---VADIIQIPAF 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~--Gi~~~s~~~d~~~~~~l~~---~~d~~kIgs~ 115 (290)
+.+.+.|+|+|....-.. .+.+..++++..+. .+.+++-+-.++.++-+.+ ..|-+-||-+
T Consensus 215 ~f~~~~~vD~Ia~SFVr~--------------a~Dv~~~r~~l~~~~~~~~iiaKIE~~eav~nldeIl~~sDgimVaRG 280 (511)
T 3gg8_A 215 NFGIPMGCNFIAASFVQS--------------ADDVRYIRGLLGPRGRHIRIIPKIENVEGLVNFDEILAEADGIMIARG 280 (511)
T ss_dssp HTTTTTTCCEEEETTCCS--------------HHHHHHHHHHHTGGGTTCEEEEEECSHHHHHTHHHHHHHCSCEEEEHH
T ss_pred HHHHHcCCCEEEEcCCCC--------------HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHhHHHHHHhCCeEEEecc
Confidence 456677999887753321 47788999988765 4889999988888765555 4788888877
Q ss_pred cc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 116 LC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 116 ~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
|+ -|-.+++.+-..||||++-|-|- .|=.|+-..+..+. .|-+-++|---+..-.||.
T Consensus 281 DLgvei~~e~v~~~qk~ii~~~~~~gkpvi~ATQmLeSMi~~p~PTRAEvsDVAnAV~-dGaDavMLSgETA~G~yPv 357 (511)
T 3gg8_A 281 DLGMEIPPEKVFLAQKMMIAKCNVVGKPVITATQMLESMIKNPRPTRAEAADVANAVL-DGTDCVMLSGETANGEFPV 357 (511)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHH-HTCSEEEESHHHHTCSCHH
T ss_pred hhcCcCCHHHHHHHHHHHHHHHHHcCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHH-hCCCEEEecccccCCCCHH
Confidence 66 34456677778999999966552 36678877777765 3555555522222223764
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=84.04 E-value=3.6 Score=38.39 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=54.4
Q ss_pred HHHHHcCCCEEeccc-cccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecC--cccHHHHhh-hcceecccCC-
Q 022892 41 SISTKVGLPLVFKSS-FDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE--TVQCEEVGK-VADIIQIPAF- 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~-~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d--~~~~~~l~~-~~d~~kIgs~- 115 (290)
+.++++|+.+|+-=. -.++.|. |.|...-...+.+++..+...||++.-.|- ...++.+.. .+|++-+...
T Consensus 31 ~~ae~aGA~aI~~l~~v~~d~~~----~~G~arm~~p~~i~~I~~av~iPV~~K~rig~~~e~qilea~GaD~Id~s~~l 106 (330)
T 2yzr_A 31 QIAEEAGAVAVMALERVPADIRA----AGGVARMSDPALIEEIMDAVSIPVMAKCRIGHTTEALVLEAIGVDMIDESEVL 106 (330)
T ss_dssp HHHHHHTCSEEEECSSCHHHHC------CCCCCCCCHHHHHHHHHHCSSCEEEEEETTCHHHHHHHHHTTCSEEEEETTS
T ss_pred HHHHHcCCCEEEecCCccccccC----CcchhhcCCHHHHHHHHHhcCCCeEEEEeecchHHHHHHHHcCCCEEehhccC
Confidence 444557999984311 0011222 444222245666777777889999997776 666676766 5888754321
Q ss_pred --------------------ccCCHH-HHHHHHhcCCeEEEeCC
Q 022892 116 --------------------LCRQTD-LLVAAAKTGKIINIKKG 138 (290)
Q Consensus 116 --------------------~~~n~~-lL~~~a~~~~PVilstG 138 (290)
.++|+. .++.+ ..|--+|=-+|
T Consensus 107 ~p~d~~~~i~k~~~~~~~~~~a~~lgea~r~~-~~Ga~~i~t~g 149 (330)
T 2yzr_A 107 TQADPFFHIYKKKFNVPFVCGARNLGEAVRRI-WEGAAMIRTKG 149 (330)
T ss_dssp CCSCSSCCCCGGGCSSCEEEECSSHHHHHHHH-HHTCSEEEECC
T ss_pred CHHHHHHHhhhhhcccchhhccccHHHHHHHH-hcCcceeeccC
Confidence 123443 45555 67888888888
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=83.95 E-value=12 Score=34.46 Aligned_cols=100 Identities=16% Similarity=0.025 Sum_probs=65.7
Q ss_pred HHHHHH-hcCCeEEEeCCCC------CCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CC-CCCCCCchhHHHHHh-cCCC
Q 022892 122 LLVAAA-KTGKIINIKKGQF------CASSVMVNSAEKVRLAGNPNVMVCERGTMF-GY-NDLIVDPRNLEWMRE-ANCP 191 (290)
Q Consensus 122 lL~~~a-~~~~PVilstG~~------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y-~~~~~dL~~i~~lk~-~~~p 191 (290)
+++++- ..+.||.++-... .+.++....++.+...|-.-|++...+... .. .....++..+..+|+ .++|
T Consensus 200 iv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iP 279 (340)
T 3gr7_A 200 VIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIP 279 (340)
T ss_dssp HHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCc
Confidence 444442 3488999988753 368889999999998887666654332211 11 112246667788888 8999
Q ss_pred EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CCEEEEeeeC
Q 022892 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVHD 243 (290)
Q Consensus 192 V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G-A~G~~IEkH~ 243 (290)
|+....-. . +..+..++..| ||++++=+.+
T Consensus 280 Vi~~GgI~-----------------s-----~e~a~~~L~~G~aD~V~iGR~~ 310 (340)
T 3gr7_A 280 TGAVGLIT-----------------S-----GWQAEEILQNGRADLVFLGREL 310 (340)
T ss_dssp EEEESSCC-----------------C-----HHHHHHHHHTTSCSEEEECHHH
T ss_pred EEeeCCCC-----------------C-----HHHHHHHHHCCCeeEEEecHHH
Confidence 98732211 1 56677788888 9998887765
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=83.90 E-value=4.9 Score=38.10 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCcEEEeecC--cccHHHHhh--hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHE--TVQCEEVGK--VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d--~~~~~~l~~--~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~A 149 (290)
+..+.+.+...++|++-. .+++ ..+.+.+.+ .+|++-|.+-.-.+.++..++.+.||+|++.+.++.|++|....
T Consensus 56 ~~~~~~a~~~~~~g~~~~-~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l 134 (444)
T 2ixa_A 56 YMVGRAQEILKKNGKKPA-KVFGNGNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDY 134 (444)
T ss_dssp HHHHHHHHHHHHTTCCCC-EEECSSTTTHHHHTTCTTCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCC-ceeccCCCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHH
Confidence 344555554556786421 1222 335555543 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 022892 150 AEKVRLAGN 158 (290)
Q Consensus 150 ve~i~~~Gn 158 (290)
++..++.|.
T Consensus 135 ~~~a~~~g~ 143 (444)
T 2ixa_A 135 VKVSEQTGV 143 (444)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhCC
Confidence 887776653
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=83.87 E-value=13 Score=34.14 Aligned_cols=138 Identities=13% Similarity=0.089 Sum_probs=70.5
Q ss_pred hhcCCCCeEEEEcc-CCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC---Cc------------ccCCCCChh
Q 022892 10 QLKAAEPFFLLAGP-NVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT---SS------------KSFRGPGMV 73 (290)
Q Consensus 10 ~i~~~~~~~iIAgp-csien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt---s~------------~~~~g~~~~ 73 (290)
.+...+|+.+=||+ +- | .|+.+.+.+ +|+-+|--.+.+..|+. .| ..|...|.+
T Consensus 43 Gl~f~NPvglAaG~~~~--~----~e~~~~l~~----~G~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~G~~n~G~~ 112 (354)
T 3tjx_A 43 NNTFANPFMNAAGVMCT--T----TEELVAMTE----SASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFD 112 (354)
T ss_dssp TEEESSSEEECTTSSCS--S----HHHHHHHHH----SSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHH
T ss_pred CEEcCCCcEEccCCCCC--C----HHHHHHHHH----cCCCEEEeCCcCcccccCCCCCeEEEcccccccccccCCHHHH
Confidence 44566776655574 32 2 345555544 47555443343322332 11 123333434
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCccc------HHHHh----hhcceecc--cC------Ccc-CCHHHH----HHH-Hhc
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQ------CEEVG----KVADIIQI--PA------FLC-RQTDLL----VAA-AKT 129 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~------~~~l~----~~~d~~kI--gs------~~~-~n~~lL----~~~-a~~ 129 (290)
..++.+.+......+|++..+.-... +..+. +.+|++-| ++ +.+ .+.+++ +++ ...
T Consensus 113 ~~~~~~~~~~~~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~g~~~l~~~~~~~~~i~~~v~~~~ 192 (354)
T 3tjx_A 113 FYLAYAAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVY 192 (354)
T ss_dssp HHHHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC---------CTTSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhccCCceEEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCcchhhhccCHHHHHHHHHHHHHHh
Confidence 44555655556668899988864321 11121 23455432 22 122 344443 333 246
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 130 GKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 130 ~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
.+|+.+|.....+..++...++.+...+
T Consensus 193 ~~pv~vK~~p~~~~~~~~~~~~~~~~~~ 220 (354)
T 3tjx_A 193 PHSFGVKMPPYFDFAAFDAAAEILNEFP 220 (354)
T ss_dssp CSCEEEEECCCCSHHHHHHHHHHHHTCT
T ss_pred hcccccccCCCCCchhHHHHHHHHHhhc
Confidence 8899999998877777766666655443
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=83.66 E-value=5.4 Score=36.27 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=42.5
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.++. |....++.+++..+ +|+|+|... .|+.| .+. +++ +...+++++..++|++-
T Consensus 82 ~grvpviaGvg~~-~t~~ai~la~~a~~----~Gadavlv~--------~P~y~-~~s-~~~l~~~f~~va~a~~lPiil 146 (304)
T 3l21_A 82 GDRARVIAGAGTY-DTAHSIRLAKACAA----EGAHGLLVV--------TPYYS-KPP-QRGLQAHFTAVADATELPMLL 146 (304)
T ss_dssp TTTSEEEEECCCS-CHHHHHHHHHHHHH----HTCSEEEEE--------CCCSS-CCC-HHHHHHHHHHHHTSCSSCEEE
T ss_pred CCCCeEEEeCCCC-CHHHHHHHHHHHHH----cCCCEEEEC--------CCCCC-CCC-HHHHHHHHHHHHHhcCCCEEE
Confidence 4678899999864 66666666666555 699987653 12212 222 344 55677888888999874
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=83.51 E-value=14 Score=32.26 Aligned_cols=167 Identities=10% Similarity=0.059 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCCCE----EeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCccc-HHHHhh
Q 022892 33 MRMAKHIKSISTKVGLPL----VFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQ-CEEVGK 105 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~----V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~-~~~l~~ 105 (290)
.++.+.+..+ +.|++. |+-..|-+ . -.+| ...++.+++++ ++++-+ -+.||+. ++.+.+
T Consensus 13 ~~l~~~i~~~--~~gad~lHvDvmDG~fvp------n--~t~G-~~~v~~lr~~~---~~~~dvhLmv~dp~~~i~~~~~ 78 (231)
T 3ctl_A 13 LKFKEQIEFI--DSHADYFHIDIMDGHFVP------N--LTLS-PFFVSQVKKLA---TKPLDCHLMVTRPQDYIAQLAR 78 (231)
T ss_dssp GGHHHHHHHH--HTTCSCEEEEEECSSSSS------C--CCBC-HHHHHHHHTTC---CSCEEEEEESSCGGGTHHHHHH
T ss_pred hhHHHHHHHH--HcCCCEEEEEEEeCccCc------c--chhc-HHHHHHHHhcc---CCcEEEEEEecCHHHHHHHHHH
Confidence 3445555554 679886 34444431 1 1123 24455555543 444433 3345544 555555
Q ss_pred -hcceecccCCc-cCCH-HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCC---CCc
Q 022892 106 -VADIIQIPAFL-CRQT-DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLI---VDP 179 (290)
Q Consensus 106 -~~d~~kIgs~~-~~n~-~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~---~dL 179 (290)
.+|++-+-... ..+. .+++.+-+.|+-+++.-.+. |+.|.... +.. +- +.+++-. ..+++.... --+
T Consensus 79 aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~-tp~~~~~~---~l~-~~-D~Vlvms-V~pGfggQ~f~~~~l 151 (231)
T 3ctl_A 79 AGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPE-TPVEAMKY---YIH-KA-DKITVMT-VDPGFAGQPFIPEML 151 (231)
T ss_dssp HTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTT-CCGGGGTT---TGG-GC-SEEEEES-SCTTCSSCCCCTTHH
T ss_pred cCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECC-CcHHHHHH---HHh-cC-CEEEEee-eccCcCCccccHHHH
Confidence 68988877666 4433 46677778899888887777 66444332 221 33 4454322 222222211 123
Q ss_pred hhHHHHHh-c-----CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe-eeC
Q 022892 180 RNLEWMRE-A-----NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME-VHD 243 (290)
Q Consensus 180 ~~i~~lk~-~-----~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE-kH~ 243 (290)
.-+..+|+ . +++|.+|..=. +.-+..++.+|||++++= +-+
T Consensus 152 ~kI~~lr~~~~~~~~~~~I~VdGGI~-----------------------~~~~~~~~~aGAd~~V~G~sai 199 (231)
T 3ctl_A 152 DKLAELKAWREREGLEYEIEVDGSCN-----------------------QATYEKLMAAGADVFIVGTSGL 199 (231)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESCCS-----------------------TTTHHHHHHHTCCEEEECTTTT
T ss_pred HHHHHHHHHHhccCCCceEEEECCcC-----------------------HHHHHHHHHcCCCEEEEccHHH
Confidence 44555554 2 57787763211 122445677899998887 654
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=83.26 E-value=2.8 Score=38.42 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=57.5
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.+++++++|++-...++ .+.+.+ .+ .+|++-|..-.-.+.++..++.+.||+|++.+.++.+++|....++..++.
T Consensus 44 ~~~~a~~~~~~~~~~~~--~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~ 121 (362)
T 1ydw_A 44 AKAFATANNYPESTKIH--GSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEAN 121 (362)
T ss_dssp HHHHHHHTTCCTTCEEE--SSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCeee--CCHHHHhcCCCCCEEEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHc
Confidence 45677888863111111 234444 43 699999999988889999999999999999999999999988888876654
Q ss_pred C
Q 022892 157 G 157 (290)
Q Consensus 157 G 157 (290)
|
T Consensus 122 g 122 (362)
T 1ydw_A 122 G 122 (362)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=83.22 E-value=5.4 Score=35.69 Aligned_cols=74 Identities=18% Similarity=0.081 Sum_probs=55.4
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.+++++++|++- .+ .+.+.+ .+ .+|++-|....-...++..++.+.||+|++.+.++.+.+|....++..++.
T Consensus 38 ~~~~~~~~g~~~---~~--~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~ 112 (332)
T 2glx_A 38 GAAYATENGIGK---SV--TSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREA 112 (332)
T ss_dssp HHHHHHHTTCSC---CB--SCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCc---cc--CCHHHHhcCCCCCEEEEeCChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHc
Confidence 445667788751 11 234444 43 599999999988888888888889999999999888999988877765554
Q ss_pred C
Q 022892 157 G 157 (290)
Q Consensus 157 G 157 (290)
|
T Consensus 113 g 113 (332)
T 2glx_A 113 G 113 (332)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=83.20 E-value=19 Score=32.27 Aligned_cols=80 Identities=21% Similarity=0.243 Sum_probs=52.7
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCcc
Q 022892 130 GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKL 208 (290)
Q Consensus 130 ~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~ 208 (290)
...|||.||.- |.+|+..|++.....|-+ ++...|-|.+.. ..+..+..|++ .+.+|++=
T Consensus 160 ~lKVIlEt~~L-t~eei~~A~~ia~eaGAD---fVKTSTGf~~~G--AT~edV~lm~~~vg~~v~VK------------- 220 (260)
T 3r12_A 160 VVKVIIETCYL-DTEEKIAACVISKLAGAH---FVKTSTGFGTGG--ATAEDVHLMKWIVGDEMGVK------------- 220 (260)
T ss_dssp EEEEECCGGGC-CHHHHHHHHHHHHHTTCS---EEECCCSSSSCC--CCHHHHHHHHHHHCTTSEEE-------------
T ss_pred cEEEEEeCCCC-CHHHHHHHHHHHHHhCcC---EEEcCCCCCCCC--CCHHHHHHHHHHhCCCceEE-------------
Confidence 34689999977 999999999999888863 333333232222 35667888888 66666662
Q ss_pred CCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 209 DGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 209 ~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
.++|.|.. .-+.+-+.+||+
T Consensus 221 -----aAGGIrt~--~~al~mi~aGA~ 240 (260)
T 3r12_A 221 -----ASGGIRTF--EDAVKMIMYGAD 240 (260)
T ss_dssp -----EESSCCSH--HHHHHHHHTTCS
T ss_pred -----EeCCCCCH--HHHHHHHHcCCc
Confidence 23455544 334455888997
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=83.17 E-value=29 Score=32.17 Aligned_cols=76 Identities=14% Similarity=0.085 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcc
Q 022892 142 ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 220 (290)
Q Consensus 142 tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~ 220 (290)
++++....++.+...|-.-|.+..++.. +.+. .++..+..+|+ +++||+....-+
T Consensus 249 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~-~~~~--~~~~~~~~v~~~~~iPvi~~Ggit--------------------- 304 (364)
T 1vyr_A 249 EEADALYLIEELAKRGIAYLHMSETDLA-GGKP--YSEAFRQKVRERFHGVIIGAGAYT--------------------- 304 (364)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCBTT-BCCC--CCHHHHHHHHHHCCSEEEEESSCC---------------------
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecCccc-CCCc--ccHHHHHHHHHHCCCCEEEECCcC---------------------
Confidence 6777777788888888666665443321 1111 24566777888 889998732221
Q ss_pred cHHHHHHHHHHcC-CCEEEEeeeC
Q 022892 221 LIPCIARTAIAVG-VDGVFMEVHD 243 (290)
Q Consensus 221 ~~~~~a~aAva~G-A~G~~IEkH~ 243 (290)
+..+..+++.| ||++++=+-+
T Consensus 305 --~~~a~~~l~~g~aD~V~~gR~~ 326 (364)
T 1vyr_A 305 --AEKAEDLIGKGLIDAVAFGRDY 326 (364)
T ss_dssp --HHHHHHHHHTTSCSEEEESHHH
T ss_pred --HHHHHHHHHCCCccEEEECHHH
Confidence 55677778888 9998887655
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=83.10 E-value=2.5 Score=38.25 Aligned_cols=52 Identities=13% Similarity=-0.025 Sum_probs=47.5
Q ss_pred hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 106 VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 106 ~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
.+|++-|.+-.-.+.++.+++.+.||+|++.+.++.|++|....++..++.|
T Consensus 72 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 123 (312)
T 3o9z_A 72 GVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTG 123 (312)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHC
T ss_pred CCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 6999999999999999999999999999999999999999999888776664
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=83.09 E-value=3.3 Score=35.14 Aligned_cols=74 Identities=8% Similarity=0.061 Sum_probs=52.1
Q ss_pred HHHHHHHHhc--CCcEEEeecCcccHHHHhh-hcceecccCC-------cc----CCHHHHHHHHh-cCCeEEEeCCCCC
Q 022892 77 KILEKVKIAY--DIPIVTDVHETVQCEEVGK-VADIIQIPAF-------LC----RQTDLLVAAAK-TGKIINIKKGQFC 141 (290)
Q Consensus 77 ~~L~~~~~~~--Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~-------~~----~n~~lL~~~a~-~~~PVilstG~~~ 141 (290)
..+.+.+++. |++++.++.+++.+..+.+ .+|++.++.. +. .+.++++++.+ .+.||+..-|..
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~- 185 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVI- 185 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCC-
T ss_pred HHHHHHHHHhCCCceEEecCCCHHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCC-
Confidence 3444444444 9999999999888877766 6998876432 11 23456777654 589999999998
Q ss_pred CHHHHHHHHH
Q 022892 142 ASSVMVNSAE 151 (290)
Q Consensus 142 tl~e~~~Ave 151 (290)
+.+++..+.+
T Consensus 186 ~~~~~~~~~~ 195 (223)
T 1y0e_A 186 TPDMYKRVMD 195 (223)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8998887654
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.57 E-value=2.5 Score=38.35 Aligned_cols=53 Identities=13% Similarity=-0.002 Sum_probs=48.3
Q ss_pred hhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 105 KVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 105 ~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
+.+|++-|.+-+-.+.++..++.+.||+|++.+.++.|++|....++..++.|
T Consensus 72 ~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 124 (318)
T 3oa2_A 72 TALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETD 124 (318)
T ss_dssp TSCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHT
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 36999999999999999999999999999999999999999999988777764
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=82.43 E-value=12 Score=34.66 Aligned_cols=67 Identities=9% Similarity=-0.025 Sum_probs=51.0
Q ss_pred HhcCCcEEEeecCcccHHHHhh-hcceecc-cC------Cc-----------cCCHHHHHHHHh-cCCeEEEeCCCCCCH
Q 022892 84 IAYDIPIVTDVHETVQCEEVGK-VADIIQI-PA------FL-----------CRQTDLLVAAAK-TGKIINIKKGQFCAS 143 (290)
Q Consensus 84 ~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kI-gs------~~-----------~~n~~lL~~~a~-~~~PVilstG~~~tl 143 (290)
++.|++++.++.+++.+..+.+ .+|++.+ |. .. .....+++++.+ .+.||+..-|.. +.
T Consensus 142 ~~~g~~v~~~v~t~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~-~~ 220 (369)
T 3bw2_A 142 RRAGTLTLVTATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIM-RG 220 (369)
T ss_dssp HHTTCEEEEEESSHHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCC-SH
T ss_pred HHCCCeEEEECCCHHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCC-CH
Confidence 4579999999999888877766 6999988 31 11 223677877754 689999999988 89
Q ss_pred HHHHHHHH
Q 022892 144 SVMVNSAE 151 (290)
Q Consensus 144 ~e~~~Ave 151 (290)
+++..+++
T Consensus 221 ~~~~~~l~ 228 (369)
T 3bw2_A 221 GQIAAVLA 228 (369)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887754
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=82.38 E-value=6.3 Score=35.49 Aligned_cols=73 Identities=15% Similarity=0.054 Sum_probs=54.8
Q ss_pred HHHHHHhcCCcEEEeecCcccHHH-Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEE-VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~-l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
++++++++|++... .+.+. +.+ .+|++-|.+..-...++...+.+.||+|++.+.++.+++|....++..++.
T Consensus 47 ~~~~a~~~g~~~~~-----~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~ 121 (346)
T 3cea_A 47 LEWAKNELGVETTY-----TNYKDMIDTENIDAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSH 121 (346)
T ss_dssp HHHHHHTTCCSEEE-----SCHHHHHTTSCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCccc-----CCHHHHhcCCCCCEEEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhC
Confidence 44567788885222 12343 443 699999999988888888888888999999998888999988877766544
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=82.37 E-value=2.6 Score=40.03 Aligned_cols=72 Identities=8% Similarity=0.062 Sum_probs=56.2
Q ss_pred HHHHHHhcCCc---EEEeecCcccHHH-Hhh-hcceecccCCccCCHHHHHHHHhcC------CeEEEeCCCCCCHHHHH
Q 022892 79 LEKVKIAYDIP---IVTDVHETVQCEE-VGK-VADIIQIPAFLCRQTDLLVAAAKTG------KIINIKKGQFCASSVMV 147 (290)
Q Consensus 79 L~~~~~~~Gi~---~~s~~~d~~~~~~-l~~-~~d~~kIgs~~~~n~~lL~~~a~~~------~PVilstG~~~tl~e~~ 147 (290)
.+++++++|++ +.+ +.+. +.+ .+|++-|..-.-.+.++..++.+.| |+|++.+.++.+++|..
T Consensus 63 ~~~~a~~~g~~~~~~~~------~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~ 136 (438)
T 3btv_A 63 SIATIQRLKLSNATAFP------TLESFASSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAE 136 (438)
T ss_dssp HHHHHHHTTCTTCEEES------SHHHHHHCSSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHH
T ss_pred HHHHHHHcCCCcceeeC------CHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHH
Confidence 45667788886 322 3344 444 6999999999888888888888889 99999999999999988
Q ss_pred HHHHHHHHc
Q 022892 148 NSAEKVRLA 156 (290)
Q Consensus 148 ~Ave~i~~~ 156 (290)
..++..++.
T Consensus 137 ~l~~~a~~~ 145 (438)
T 3btv_A 137 SIYKAAAER 145 (438)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHc
Confidence 888765544
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=82.35 E-value=2.6 Score=38.72 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=47.8
Q ss_pred HHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 102 EVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 102 ~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
.+++ .+|++-|..-.-.+.++..++.+.||+|++.+.++.|++|....++..++.|
T Consensus 60 ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g 116 (362)
T 3fhl_A 60 LTEDPEIDLIVVNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKG 116 (362)
T ss_dssp HHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHT
T ss_pred HhcCCCCCEEEEeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 3444 5999999999999999999999999999999999999999988887655543
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=82.32 E-value=2.9 Score=39.71 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=54.8
Q ss_pred HHHHHHhcCCcEEEeecCcccHHH-Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEE-VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~-l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.+++++++|++-. .+.-..+.+. +.+ .+|++-|..-.-.+.++..++.+.||+|++.+.++.+++|....++..++.
T Consensus 122 ~~~~a~~~g~~~~-~~~~~~~~~~ll~~~~vD~V~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 200 (433)
T 1h6d_A 122 AKIVAAEYGVDPR-KIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAA 200 (433)
T ss_dssp HHHHHHHTTCCGG-GEECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcc-cccccCCHHHHhcCCCCCEEEEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHh
Confidence 4566777887520 0001122333 333 699999999998999999999999999999999998999887777654443
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=82.22 E-value=29 Score=31.41 Aligned_cols=155 Identities=18% Similarity=0.171 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc------------CCHHHH---HHHHhc--CCeEEEeC
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC------------RQTDLL---VAAAKT--GKIINIKK 137 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~------------~n~~lL---~~~a~~--~~PVilst 137 (290)
+..|++..++-...++-++||..++..+++ .+|++-+|+... +=.+++ +.+.+. ..||+.--
T Consensus 18 ~~~lr~~~~~g~~i~m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~ 97 (275)
T 3vav_A 18 VPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADL 97 (275)
T ss_dssp HHHHHHHHHHTCCEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEEC
T ss_pred HHHHHHHHHCCCcEEEEeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEec
Confidence 556667666667788889999999999988 699999885531 222333 455543 35788765
Q ss_pred CC--CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccC
Q 022892 138 GQ--FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 138 G~--~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
.. ..++++....+..+.+.|- +-+=+|-+.. -...+..|.+.|+||+. |.-..|-.... .|+-.-
T Consensus 98 pfgsY~s~~~a~~~a~rl~kaGa-~aVklEdg~~--------~~~~i~~l~~~GIpv~g---HlgltPq~~~~-~gg~~v 164 (275)
T 3vav_A 98 PFGTYGTPADAFASAVKLMRAGA-QMVKFEGGEW--------LAETVRFLVERAVPVCA---HVGLTPQSVHA-FGGFKV 164 (275)
T ss_dssp CTTSCSSHHHHHHHHHHHHHTTC-SEEEEECCGG--------GHHHHHHHHHTTCCEEE---EEESCGGGHHH-HC---C
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CEEEECCchh--------HHHHHHHHHHCCCCEEE---ecCCCceEEec-cCCeEE
Confidence 54 2588886555554555675 3444665531 12466667678999964 42000100000 001111
Q ss_pred CCCc----ccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 216 GGLR----ELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 216 ~g~~----~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
-|+. +.+..=+++-..+||+++++|-=+
T Consensus 165 qgrt~~~a~~~i~rA~a~~eAGA~~ivlE~vp 196 (275)
T 3vav_A 165 QGKTEAGAAQLLRDARAVEEAGAQLIVLEAVP 196 (275)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTCSEEEEESCC
T ss_pred EcCCHHHHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 1221 112223334456899999999643
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=82.13 E-value=2.9 Score=38.43 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=48.5
Q ss_pred HHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 102 EVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 102 ~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
.+.+ .+|++-|..-.-...++..++.+.||+|++.+.++.+++|....++..++.|
T Consensus 60 ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g 116 (358)
T 3gdo_A 60 ITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKG 116 (358)
T ss_dssp HHTCTTCCEEEECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHT
T ss_pred HhcCCCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcC
Confidence 3444 6999999999999999999999999999999999999999998888666554
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=82.10 E-value=4.2 Score=36.39 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=50.8
Q ss_pred cHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 022892 99 QCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN 158 (290)
Q Consensus 99 ~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn 158 (290)
+.+.+ .+ .+|++-|.+-.-.+.++..++-+.||+|++.+.++.+++|....++..++.|-
T Consensus 56 ~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~ 117 (294)
T 1lc0_A 56 SLEDALRSQEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGR 117 (294)
T ss_dssp CHHHHHHCSSEEEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred CHHHHhcCCCCCEEEEeCCcHhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 44544 43 69999999999899999999889999999999999999999999887776653
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=82.02 E-value=22 Score=32.10 Aligned_cols=130 Identities=15% Similarity=0.072 Sum_probs=79.6
Q ss_pred hhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH
Q 022892 5 TALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI 84 (290)
Q Consensus 5 ~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~ 84 (290)
..++..|. .+.+.=--..+.|.+.....|+--+++ .|-+.||..-... +|+ . .....++-+.|+
T Consensus 55 ~~~~~~i~---~~~~lpntaG~~taeeAv~~a~lare~---~gt~~iKlEvi~d-~~~-----l----~pD~~~tv~aa~ 118 (268)
T 2htm_A 55 VGLLEALE---GVRLLPNTAGARTAEEAVRLARLGRLL---TGERWVKLEVIPD-PTY-----L----LPDPLETLKAAE 118 (268)
T ss_dssp -CHHHHTT---TSEEEEBCTTCCSHHHHHHHHHHHHHH---HCCSEEBCCCCSC-TTT-----T----CCCHHHHHHHHH
T ss_pred ccHHHHHh---hhhccCcccCCCCHHHHHHHHHhhhHh---cCcceeeeeeccC-ccc-----c----CcCHHHHHHHHH
Confidence 45666664 222222111233777777777654443 5788888766552 332 1 112334444444
Q ss_pred hc---CCcEE-EeecCcccHHHHhh-hccee-----cccCC-ccCCHHHHHHHHh-c-C-CeEEEeCCCCCCHHHHHHHH
Q 022892 85 AY---DIPIV-TDVHETVQCEEVGK-VADII-----QIPAF-LCRQTDLLVAAAK-T-G-KIINIKKGQFCASSVMVNSA 150 (290)
Q Consensus 85 ~~---Gi~~~-s~~~d~~~~~~l~~-~~d~~-----kIgs~-~~~n~~lL~~~a~-~-~-~PVilstG~~~tl~e~~~Av 150 (290)
++ |+.++ -..-|+..+..+++ .++++ -|||. -++|..+|+.+.. . + .||+.-=|.. |++++..|.
T Consensus 119 ~L~k~Gf~Vlpy~~~D~~~ak~l~~~G~~aVmPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~-tpsDAa~Am 197 (268)
T 2htm_A 119 RLIEEDFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLG-LPSHAAEVM 197 (268)
T ss_dssp HHHHTTCEECCEECSCHHHHHHHHHHTCSCBEEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCC-SHHHHHHHH
T ss_pred HHHHCCCEEeeccCCCHHHHHHHHhcCCCEEEecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCC-CHHHHHHHH
Confidence 44 98877 34567777777777 45544 15665 4578888888876 3 5 8999999998 999999887
Q ss_pred H
Q 022892 151 E 151 (290)
Q Consensus 151 e 151 (290)
+
T Consensus 198 e 198 (268)
T 2htm_A 198 E 198 (268)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=81.54 E-value=6.1 Score=32.75 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=46.3
Q ss_pred HHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 022892 150 AEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 228 (290)
Q Consensus 150 ve~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~a 228 (290)
++.+...|...+.+...+-. +.. ..++.+.+..++. .++||+.-...+. +.-...
T Consensus 136 i~~~~~~~~~~vli~~~~~~-g~~-~g~~~~~i~~~~~~~~~Pvia~~g~~~----------------------~~~~~~ 191 (237)
T 3cwo_X 136 VVEVEKRGAGEILLTSIDRD-GTK-SGYDTEMIRFVRPLTTLPIIASGGAGK----------------------MEHFLE 191 (237)
T ss_dssp HHHHHHHTCSEEEEEETTTT-TCC-SCCCHHHHHHHGGGCCSCEEEESCCCS----------------------HHHHHH
T ss_pred HHHHhhcCCCeEEEEecCCC-Ccc-ccccHHHHHHHHHhcCCCEEecCCCCC----------------------HHHHHH
Confidence 34455556656665543221 211 1234677777777 6899977333321 333334
Q ss_pred HHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHH
Q 022892 229 AIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELL 265 (290)
Q Consensus 229 Ava~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv 265 (290)
+...||+|+++=+-+ +...+++.++.+.+
T Consensus 192 ~~~~G~~~~~vg~a~--------~~~~~~~~~~~~~l 220 (237)
T 3cwo_X 192 AFLAGADAALAASVF--------HFREIDVRELKEYL 220 (237)
T ss_dssp HHHHTCSEEEESHHH--------HTTSSCHHHHHHHH
T ss_pred HHHcCcHHHhhhHHH--------HcCCCCHHHHHHHH
Confidence 556899999987755 22335556655543
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=81.50 E-value=8.1 Score=34.85 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=53.9
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH-HHHHHHHHHhc---CCc
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG-LKILEKVKIAY---DIP 89 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~-l~~L~~~~~~~---Gi~ 89 (290)
++++-||+|.++. |....++.|++. +++|+|++.-. .|+.|+.+. +++ +...+++++.. ++|
T Consensus 70 ~gr~pviaGvg~~-~t~~ai~la~~A----~~~Gadavlv~--------~P~y~~~~s-~~~l~~~f~~va~a~p~~~lP 135 (294)
T 3b4u_A 70 IAPSRIVTGVLVD-SIEDAADQSAEA----LNAGARNILLA--------PPSYFKNVS-DDGLFAWFSAVFSKIGKDARD 135 (294)
T ss_dssp CCGGGEEEEECCS-SHHHHHHHHHHH----HHTTCSEEEEC--------CCCSSCSCC-HHHHHHHHHHHHHHHCTTCCC
T ss_pred CCCCcEEEeCCCc-cHHHHHHHHHHH----HhcCCCEEEEc--------CCcCCCCCC-HHHHHHHHHHHHHhcCCCCCc
Confidence 4567799999974 556666666554 45799998753 222222133 444 55677888888 899
Q ss_pred EEEe--------ecCcccHHHHh-h--h-cceecccCCccCCH
Q 022892 90 IVTD--------VHETVQCEEVG-K--V-ADIIQIPAFLCRQT 120 (290)
Q Consensus 90 ~~s~--------~~d~~~~~~l~-~--~-~d~~kIgs~~~~n~ 120 (290)
++-= .++++.+..|. + . +-.+|-.+.++.++
T Consensus 136 iilYn~P~~tg~~l~~~~~~~La~~~pn~ivgiKds~gd~~~~ 178 (294)
T 3b4u_A 136 ILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGVKDSSGNWSHT 178 (294)
T ss_dssp EEEEECHHHHSCCCCHHHHHHHHHHCTTTEEEEEECCCCHHHH
T ss_pred EEEEECcchhCcCCCHHHHHHHHHhCCCcEEEEEECCCCHHHH
Confidence 8741 13344444444 2 2 34456566555443
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=81.14 E-value=36 Score=31.81 Aligned_cols=174 Identities=11% Similarity=0.028 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec---CcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH---ETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~---d~~~~~~l~ 104 (290)
+.+..+++|++|.++ |++.+=..+ |..++. ..+.++. ..+.++..-...| .++.++...
T Consensus 23 ~~~~k~~ia~~L~~~----Gv~~IE~g~----p~~~~~---------~~~~~~~-i~~~~~~~~v~~~~r~~~~di~~a~ 84 (382)
T 2ztj_A 23 STQDKVEIAKALDEF----GIEYIEVTT----PVASPQ---------SRKDAEV-LASLGLKAKVVTHIQCRLDAAKVAV 84 (382)
T ss_dssp CHHHHHHHHHHHHHH----TCSEEEECC----TTSCHH---------HHHHHHH-HHTSCCSSEEEEEEESCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc----CcCEEEEcC----CcCCHH---------HHHHHHH-HHhcCCCcEEEEEcccChhhHHHHH
Confidence 678889999999885 998775532 222222 1111222 2233333222222 233444444
Q ss_pred h-hcceecc--cCCcc-------------CC-HHHHHHHHhcC--CeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 105 K-VADIIQI--PAFLC-------------RQ-TDLLVAAAKTG--KIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 105 ~-~~d~~kI--gs~~~-------------~n-~~lL~~~a~~~--~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
+ .++.+-| ++.+. .+ .+.++++-+.| ..|-++ .+...+++.+.+.++.+... -..|.|
T Consensus 85 ~~g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~-a~~i~l 163 (382)
T 2ztj_A 85 ETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY-VDRVGL 163 (382)
T ss_dssp HTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG-CSEEEE
T ss_pred HcCCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh-cCEEEe
Confidence 4 4554433 22221 11 13344555567 666665 55555788888888888777 666777
Q ss_pred EeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 164 CERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 164 ~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
+.-... ..|.. + ..-+..+++ + ++||++ +.|-. +.+...-+.+|+.+||+ .|+
T Consensus 164 ~DT~G~-~~P~~-~-~~lv~~l~~~~~~~~~i~~-H~Hnd------------------~GlAvAN~laAv~aGa~--~vd 219 (382)
T 2ztj_A 164 ADTVGV-ATPRQ-V-YALVREVRRVVGPRVDIEF-HGHND------------------TGCAIANAYEAIEAGAT--HVD 219 (382)
T ss_dssp EETTSC-CCHHH-H-HHHHHHHHHHHTTTSEEEE-EEBCT------------------TSCHHHHHHHHHHTTCC--EEE
T ss_pred cCCCCC-CCHHH-H-HHHHHHHHHhcCCCCeEEE-EeCCC------------------ccHHHHHHHHHHHhCCC--EEE
Confidence 665542 12221 1 134555665 3 578888 77753 22335567789999998 888
Q ss_pred eeCC
Q 022892 241 VHDD 244 (290)
Q Consensus 241 kH~t 244 (290)
.=+.
T Consensus 220 ~tv~ 223 (382)
T 2ztj_A 220 TTIL 223 (382)
T ss_dssp EBGG
T ss_pred Eccc
Confidence 7664
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.07 E-value=3.8 Score=37.38 Aligned_cols=58 Identities=22% Similarity=0.134 Sum_probs=48.5
Q ss_pred HHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 100 CEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 100 ~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
.+.+ ++ .+|++-|..-.-.+.++..++.+.||+|++.+.++.+++|....++..++.|
T Consensus 59 ~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g 118 (352)
T 3kux_A 59 PQMLFNDPSIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAG 118 (352)
T ss_dssp HHHHHHCSSCCEEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCCEEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcC
Confidence 3444 43 5999999999989999999999999999999999999999988887665543
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=80.89 E-value=2.3 Score=37.98 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=55.0
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHH-cCCCcEEEEeecCCC------CCC-CCCCCchhHHHHHh-cCCCEEEeCCCCC
Q 022892 130 GKIINIKKGQFCASSVMVNSAEKVRL-AGNPNVMVCERGTMF------GYN-DLIVDPRNLEWMRE-ANCPVVADVTHSL 200 (290)
Q Consensus 130 ~~PVilstG~~~tl~e~~~Ave~i~~-~Gn~~i~L~~~gs~~------~y~-~~~~dL~~i~~lk~-~~~pV~~D~sHs~ 200 (290)
+.|+++.-+.. +++++..+++.+.. .|-+ .+-+|.++-. .|. +...-...+..+++ .++||++=.+..+
T Consensus 98 ~~p~~v~l~~~-~~~~~~~~a~~~~~~~g~d-~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~~~ 175 (311)
T 1ep3_A 98 ELPIIANVAGS-EEADYVAVCAKIGDAANVK-AIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNV 175 (311)
T ss_dssp TSCEEEEECCS-SHHHHHHHHHHHTTSTTEE-EEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCS
T ss_pred CCcEEEEEcCC-CHHHHHHHHHHHhccCCCC-EEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECCCh
Confidence 88999998877 89999999998876 5643 3444543210 010 00111345566666 5899876211111
Q ss_pred CCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 201 QQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
.. ...++..+..+|++++.+-
T Consensus 176 ---------------~~----~~~~a~~l~~~G~d~i~v~ 196 (311)
T 1ep3_A 176 ---------------TD----IVPIAKAVEAAGADGLTMI 196 (311)
T ss_dssp ---------------SC----SHHHHHHHHHTTCSEEEEC
T ss_pred ---------------HH----HHHHHHHHHHcCCCEEEEe
Confidence 01 1466778889999988873
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=80.73 E-value=11 Score=32.38 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=61.2
Q ss_pred HHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec--Cc-ccHHHHhhhcc-eecccC
Q 022892 39 IKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH--ET-VQCEEVGKVAD-IIQIPA 114 (290)
Q Consensus 39 L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~--d~-~~~~~l~~~~d-~~kIgs 114 (290)
.++.+.++|++.|...... .+....+.+.++++|+.++--+- ++ +.+..+.+.+| ++.+.+
T Consensus 100 ~~~~~~~~Gad~v~~~~~~---------------~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d~~i~~~~ 164 (248)
T 1geq_A 100 FLAEAKASGVDGILVVDLP---------------VFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVS 164 (248)
T ss_dssp HHHHHHHHTCCEEEETTCC---------------GGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCC---------------hhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCCCeEEEEE
Confidence 3444445699988775322 13356778888889987665332 22 22334444466 543322
Q ss_pred C---c-------cCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 022892 115 F---L-------CRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVM 162 (290)
Q Consensus 115 ~---~-------~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~ 162 (290)
. . -.+.++++++.+ ++.||+..-|.. +.+++.... ..|-.-++
T Consensus 165 ~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~-~~e~i~~~~----~~Gad~vi 218 (248)
T 1geq_A 165 LYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVS-KREHVVSLL----KEGANGVV 218 (248)
T ss_dssp CC-------CCCHHHHHHHHHHHHHCSSCEEEESCCC-SHHHHHHHH----HTTCSEEE
T ss_pred CCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecC-CHHHHHHHH----HcCCCEEE
Confidence 2 1 123457777654 479999999998 878877643 35654444
|
| >1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A | Back alignment and structure |
|---|
Probab=80.60 E-value=3.8 Score=40.26 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=71.0
Q ss_pred HHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc--CCcEEEeecCcccHHHHhh---hcceecccCCcc-
Q 022892 44 TKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY--DIPIVTDVHETVQCEEVGK---VADIIQIPAFLC- 117 (290)
Q Consensus 44 ~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~--Gi~~~s~~~d~~~~~~l~~---~~d~~kIgs~~~- 117 (290)
.+.|+|.|....-+. .+.+..++++..+. .+.+++-+-.++.++-+.+ ..|.+-||..|+
T Consensus 203 l~~g~d~I~lpfV~s--------------aeDv~~~~~~l~~~~~~i~IiakIEt~eav~nldeI~~~~DgImvgrgDLg 268 (500)
T 1a3w_A 203 VKNGVHMVFASFIRT--------------ANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGDLG 268 (500)
T ss_dssp HHHTCSEEEECSCCS--------------HHHHHHHHHHHHHHHTTSEEEEEECSSHHHHSHHHHHHHSSEEEECHHHHH
T ss_pred HHcCCCEEEECCCCC--------------HHHHHHHHHHHHhcCCCcEEEEEECChHHHHhHHHHHHhCCEEEECchHhh
Confidence 345999988753321 46677777777543 5889999988888766665 478898888766
Q ss_pred ----------CCHHHHHHHHhcCCeEEE---------eCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 118 ----------RQTDLLVAAAKTGKIINI---------KKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 118 ----------~n~~lL~~~a~~~~PVil---------stG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
-+..+++++-..||||++ .++.- |-.|+-.+...+. .|.+-++|
T Consensus 269 velg~~~v~~aqk~ii~aaraaGkpvi~ATQMLeSMi~~~~p-traEvsdva~av~-~G~d~vmL 331 (500)
T 1a3w_A 269 IEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRP-TRAEVSDVGNAIL-DGADCVML 331 (500)
T ss_dssp HHTTGGGHHHHHHHHHHHHHHHTCCEEECSSTTGGGGSCSSC-CHHHHHHHHHHHH-HTCSEECB
T ss_pred hhcCcHHHHHHHHHHHHHHHhcCCCEEEEeehhhhhccCCCc-hHHHHHHHHHHHH-hCCCEEEe
Confidence 233455666778999996 44444 7777777777765 46654443
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=80.55 E-value=8.7 Score=36.97 Aligned_cols=115 Identities=18% Similarity=0.088 Sum_probs=62.7
Q ss_pred cHHHHhh-hcceecccCCcc---CCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEe-ecC---
Q 022892 99 QCEEVGK-VADIIQIPAFLC---RQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCE-RGT--- 168 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~---~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~-~gs--- 168 (290)
.++.+.+ .+|.+.|....- ...+.++++.+. ++||+++++. +.++...+. ..|-+-|.+-- .|+
T Consensus 241 ~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~--t~e~a~~l~----~~G~d~I~v~~~~G~~~~ 314 (494)
T 1vrd_A 241 RVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVA--TPEGTEALI----KAGADAVKVGVGPGSICT 314 (494)
T ss_dssp HHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEEC--SHHHHHHHH----HTTCSEEEECSSCSTTCH
T ss_pred HHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcC--CHHHHHHHH----HcCCCEEEEcCCCCcccc
Confidence 4444444 578888754322 244566776554 7999997663 588875543 46765444411 110
Q ss_pred -C--CCCCCCCCCchhHHHHHh----cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 169 -M--FGYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 169 -~--~~y~~~~~dL~~i~~lk~----~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
. .+... -.+..++.+.+ .++||+.|.-=.. ..-+..|+++||+++++=+
T Consensus 315 ~~~~~~~g~--p~~~~l~~v~~~~~~~~ipvia~GGI~~----------------------~~di~kala~GAd~V~iGr 370 (494)
T 1vrd_A 315 TRVVAGVGV--PQLTAVMECSEVARKYDVPIIADGGIRY----------------------SGDIVKALAAGAESVMVGS 370 (494)
T ss_dssp HHHHHCCCC--CHHHHHHHHHHHHHTTTCCEEEESCCCS----------------------HHHHHHHHHTTCSEEEESH
T ss_pred ccccCCCCc--cHHHHHHHHHHHHhhcCCCEEEECCcCC----------------------HHHHHHHHHcCCCEEEECH
Confidence 0 00100 12334444433 4799988532211 2334467899999998765
Q ss_pred eC
Q 022892 242 HD 243 (290)
Q Consensus 242 H~ 243 (290)
-|
T Consensus 371 ~~ 372 (494)
T 1vrd_A 371 IF 372 (494)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A* | Back alignment and structure |
|---|
Probab=80.37 E-value=4.2 Score=39.78 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHH-HHHcCCCEEeccccccCCCCCcccCC--CCChhHHHHHHHHHHHhcCCcEEE--ee--------
Q 022892 28 SEEHIMRMAKHIKSI-STKVGLPLVFKSSFDKANRTSSKSFR--GPGMVEGLKILEKVKIAYDIPIVT--DV-------- 94 (290)
Q Consensus 28 n~~~~le~Ak~L~~~-a~~~G~~~V~~~~~~k~~rts~~~~~--g~~~~~~l~~L~~~~~~~Gi~~~s--~~-------- 94 (290)
|++..+++|..+++. -+++|...|....-+-..|...+.+. .-.+..|++.|.++.+++|+.|-- ++
T Consensus 45 ~e~~i~~~Ad~~~~~Gl~~~GyeyvvIDDGW~~~rd~~G~~~~d~~kFP~Glk~Lad~ih~~GlKfGIw~~pG~~tC~~~ 124 (479)
T 3lrk_A 45 SEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGRDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAGY 124 (479)
T ss_dssp CHHHHHHHHHHHHHTTCGGGTCCEEECCSSCEEEECTTSCEEECTTTCTTCHHHHHHHHHHTTCEEEEEEESSSBCTTSS
T ss_pred CHHHHHHHHHHHHhcCccccCceEEEECCccccccCCCCCEecChhhcCCCHHHHHHHHHHCCCeeEEEecCccccccCC
Confidence 788889999988873 23458776655433322344333221 111246899999999999999865 44
Q ss_pred -----cCcccHHHHhh-hcceecccCCccC------------CHHHHHHHHhcCCeEEEeC
Q 022892 95 -----HETVQCEEVGK-VADIIQIPAFLCR------------QTDLLVAAAKTGKIINIKK 137 (290)
Q Consensus 95 -----~d~~~~~~l~~-~~d~~kIgs~~~~------------n~~lL~~~a~~~~PVilst 137 (290)
+....++.+++ .+|++|+--.... -..+-+++.++|+||++|-
T Consensus 125 pGsl~~~~~da~~fa~WGVDylK~D~c~~~~~~~~~~~~~~~y~~m~~AL~~tGRpI~~Sl 185 (479)
T 3lrk_A 125 PGSLGREEEDAQFFANNRVDYLKYDNCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSL 185 (479)
T ss_dssp BCCTTCHHHHHHHHHHTTCCEEEEECTTCTTCCSSHHHHHHHHHHHHHHHHHHCSCCEEEE
T ss_pred CchhHHHHHHHHHHHHhCCcEEEEccCCCccccCCcchhHHHHHHHHHHHHHhCCCeEEEe
Confidence 22233455666 7999997543210 1134466788999999985
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=80.28 E-value=12 Score=34.78 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=59.3
Q ss_pred CCeEEEeCCCC-------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCC--CC-CCCCCchhHHHHHh-cCCCEEEeCCC
Q 022892 130 GKIINIKKGQF-------CASSVMVNSAEKVRLAGNPNVMVCERGTMFG--YN-DLIVDPRNLEWMRE-ANCPVVADVTH 198 (290)
Q Consensus 130 ~~PVilstG~~-------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~--y~-~~~~dL~~i~~lk~-~~~pV~~D~sH 198 (290)
.+||.++-... .+++|....++.+...|-.-|++...+.... .+ ....++..+..+|+ +++||+....-
T Consensus 225 d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI 304 (363)
T 3l5l_A 225 NLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGF 304 (363)
T ss_dssp TSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSST
T ss_pred CceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCC
Confidence 57999987542 3678888888888888866565554332111 11 12245666777888 89999873221
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CCEEEEeeeC
Q 022892 199 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVHD 243 (290)
Q Consensus 199 s~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G-A~G~~IEkH~ 243 (290)
. . +..+..++..| ||++++=+.+
T Consensus 305 ~-----------------s-----~e~a~~~l~~G~aD~V~iGR~~ 328 (363)
T 3l5l_A 305 G-----------------T-----PQLAEAALQANQLDLVSVGRAH 328 (363)
T ss_dssp T-----------------S-----HHHHHHHHHTTSCSEEECCHHH
T ss_pred C-----------------C-----HHHHHHHHHCCCccEEEecHHH
Confidence 1 1 55677788888 9988776654
|
| >3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* | Back alignment and structure |
|---|
Probab=80.24 E-value=7.5 Score=34.03 Aligned_cols=152 Identities=11% Similarity=0.090 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHHHH---HcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSIST---KVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~---~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~ 104 (290)
+.+...++...|.+.++ .+|+|+|...+-.. ..|.|.+ ...+...++.+..|+|+++... ..++.+.
T Consensus 44 t~e~l~~~~~~l~~aa~~L~~ag~d~i~~aCtsa------s~~~G~~--~~~~~~~~l~~~~~iPv~~~~~--A~~~al~ 113 (240)
T 3ixl_A 44 TPEGYDAVIESVVDHARRLQKQGAAVVSLMCTSL------SFYRGAA--FNAALTVAMREATGLPCTTMST--AVLNGLR 113 (240)
T ss_dssp SHHHHHHHGGGHHHHHHHHHHTTEEEEEECCHHH------HHTTCHH--HHHHHHHHHHHHHSSCEEEHHH--HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCCEEEECCcHH------HHhcccc--hHHHHHHHHHhccCCCEECHHH--HHHHHHH
Confidence 34444444333333332 35899888753221 1122221 1223344555668999998443 2333343
Q ss_pred h-hcc-eecccCCccC-CHHHHHHHHhcCCeEEEeCCCC---------CCHHHHHHHHHH-HHHcCCCcEEEEeecCCCC
Q 022892 105 K-VAD-IIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQF---------CASSVMVNSAEK-VRLAGNPNVMVCERGTMFG 171 (290)
Q Consensus 105 ~-~~d-~~kIgs~~~~-n~~lL~~~a~~~~PVilstG~~---------~tl~e~~~Ave~-i~~~Gn~~i~L~~~gs~~~ 171 (290)
. .+. +.-++.+... +..+.+.+...|..|+...+.. .+.+++.++++. +....+-+.+++-|+-
T Consensus 114 ~~g~~rvglltpy~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~CT~--- 190 (240)
T 3ixl_A 114 ALGVRRVALATAYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSSGG--- 190 (240)
T ss_dssp HTTCSEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEECTT---
T ss_pred HhCCCEEEEEeCChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeCCC---
Confidence 3 222 2233343333 2233345666788776654432 146677777776 5233345778888963
Q ss_pred CCCCCCCchhHHHHHh-cCCCEEEeCC
Q 022892 172 YNDLIVDPRNLEWMRE-ANCPVVADVT 197 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~-~~~pV~~D~s 197 (290)
++. +..+..+++ +++|| +|+.
T Consensus 191 l~~----l~~i~~le~~lg~PV-ids~ 212 (240)
T 3ixl_A 191 LLT----LDAIPEVERRLGVPV-VSSS 212 (240)
T ss_dssp SCC----TTHHHHHHHHHSSCE-EEHH
T ss_pred Cch----hhhHHHHHHHhCCCE-EeHH
Confidence 443 235667777 89999 7654
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=80.18 E-value=31 Score=34.29 Aligned_cols=127 Identities=18% Similarity=0.149 Sum_probs=87.9
Q ss_pred CCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEE
Q 022892 13 AAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIV 91 (290)
Q Consensus 13 ~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~ 91 (290)
..+++.+=|.++. +. ..++.++.|++ +|+|++..++-. |.. +..++.++.+.+.+ .++++
T Consensus 266 ~~grL~VgAAVgv--~~-d~~eR~~aLv~----AGvD~iviD~ah-----------Ghs-~~v~~~i~~ik~~~p~~~vi 326 (556)
T 4af0_A 266 ESKQLYCGAAIGT--RP-GDKDRLKLLAE----AGLDVVVLDSSQ-----------GNS-VYQIEFIKWIKQTYPKIDVI 326 (556)
T ss_dssp TTCCBCCEEEECS--SH-HHHHHHHHHHH----TTCCEEEECCSC-----------CCS-HHHHHHHHHHHHHCTTSEEE
T ss_pred hhhceeeEEEecc--Cc-cHHHHHHHHHh----cCCcEEEEeccc-----------ccc-HHHHHHHHHHHhhCCcceEE
Confidence 3567888888886 44 47899999998 599998765321 222 34455566665555 78887
Q ss_pred E-eecCcccHHHHhh-hcceecccCC--cc-C----------CHHHH----HHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 92 T-DVHETVQCEEVGK-VADIIQIPAF--LC-R----------QTDLL----VAAAKTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 92 s-~~~d~~~~~~l~~-~~d~~kIgs~--~~-~----------n~~lL----~~~a~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
. -+-+.+.+..|.+ .+|.+|||-+ .+ + |..-+ +++.+.+.|||--=|.. +..++..|+.
T Consensus 327 aGNVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~-~sGDi~KAla- 404 (556)
T 4af0_A 327 AGNVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIG-NIGHIAKALA- 404 (556)
T ss_dssp EEEECSHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCCC-SHHHHHHHHH-
T ss_pred eccccCHHHHHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCcC-cchHHHHHhh-
Confidence 7 8888888888877 7999998654 11 1 12111 22345789999999998 9999988853
Q ss_pred HHHcCCCcEEE
Q 022892 153 VRLAGNPNVMV 163 (290)
Q Consensus 153 i~~~Gn~~i~L 163 (290)
.|..-++|
T Consensus 405 ---aGAd~VMl 412 (556)
T 4af0_A 405 ---LGASAVMM 412 (556)
T ss_dssp ---TTCSEEEE
T ss_pred ---cCCCEEEE
Confidence 57766664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 290 | ||||
| d2a21a1 | 263 | c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonat | 3e-65 | |
| d1vr6a1 | 338 | c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate | 3e-54 | |
| d1o60a_ | 281 | c.1.10.4 (A:) 3-deoxy-D-manno-octulosonate 8-phosp | 1e-43 |
| >d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) species: Aquifex aeolicus [TaxId: 63363]
Score = 203 bits (517), Expect = 3e-65
Identities = 131/263 (49%), Positives = 173/263 (65%), Gaps = 7/263 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRTSSKSFRGPGMV 73
E F ++AGP IESEE ++++ + IK +S K + VFKSSFDKANR+S SFRG G+
Sbjct: 1 EKFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLE 60
Query: 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 133
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +
Sbjct: 61 YGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAV 120
Query: 134 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV 193
N+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+ + + V+
Sbjct: 121 NVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRS-LPIMKQWAKVI 179
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D
Sbjct: 180 YDATHSVQLP-----GGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAS 234
Query: 254 TQWPLRNLEELLEELVAIAKVSK 276
TQ PL LE ++E ++ I +V+
Sbjct: 235 TQLPLSQLEGIIEAILEIREVAS 257
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Score = 177 bits (449), Expect = 3e-54
Identities = 74/263 (28%), Positives = 118/263 (44%), Gaps = 26/263 (9%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
F ++AGP +E E +M A + + KV +K RTS SF+G G +
Sbjct: 93 GYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKP------RTSPYSFQGLGE-K 145
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GL+ L + Y + +VT+ +V + ADIIQI A + LL A K +
Sbjct: 146 GLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVL 205
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLE---WMREANCP 191
+K+G + SAE + +GN +++CERG +E++ P
Sbjct: 206 LKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLP 265
Query: 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 251
++ D +HS GG R+L+ ++R AIAVG G+ +EVH +P A D
Sbjct: 266 ILVDPSHS----------------GGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSD 309
Query: 252 GPTQWPLRNLEELLEELVAIAKV 274
G +EL++E+ +A
Sbjct: 310 GKQSLDFELFKELVQEMKKLADA 332
|
| >d1o60a_ c.1.10.4 (A:) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Haemophilus influenzae [TaxId: 727]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) species: Haemophilus influenzae [TaxId: 727]
Score = 147 bits (372), Expect = 1e-43
Identities = 116/268 (43%), Positives = 168/268 (62%), Gaps = 3/268 (1%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
+PF L G NV+ES + M++ + ++ K+G+P VFK+SFDKANR+S S+RGPGM E
Sbjct: 16 KPFVLFGGMNVLESRDMAMQVCEAYVKVTEKLGVPYVFKASFDKANRSSIHSYRGPGMEE 75
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GLKI +++K + + I+TDVHE QC+ V V DIIQ+PAFL RQTDL+ A AKTG +IN
Sbjct: 76 GLKIFQELKDTFGVKIITDVHEIYQCQPVADVVDIIQLPAFLARQTDLVEAMAKTGAVIN 135
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 194
+KK QF + S M N EK+ GN +++C+RGT FGY++LIVD M++A+
Sbjct: 136 VKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTNFGYDNLIVDMLGFSVMKKASKG--- 192
Query: 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254
+ + D G AS G R + +AR+ +AVG+ G+F+E H +P A DGP+
Sbjct: 193 SPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHPNPNQAKCDGPS 252
Query: 255 QWPLRNLEELLEELVAIAKVSKGKQRMN 282
PL LE + ++ AI + K ++
Sbjct: 253 ALPLSALEGFVSQMKAIDDLVKSFPELD 280
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 100.0 | |
| d2a21a1 | 263 | 3-deoxy-D-manno-octulosonate 8-phosphate synthase | 100.0 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 100.0 | |
| d1vlia2 | 295 | Spore coat polysaccharide biosynthesis protein Sps | 100.0 | |
| d1o60a_ | 281 | 3-deoxy-D-manno-octulosonate 8-phosphate synthase | 100.0 | |
| d1n8fa_ | 343 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 100.0 | |
| d1of8a_ | 346 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 100.0 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 96.83 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 96.33 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 96.07 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 95.92 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 95.56 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 95.34 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 95.29 | |
| d1eyea_ | 270 | Dihydropteroate synthetase {Mycobacterium tubercul | 95.28 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 95.1 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 94.79 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 94.66 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 94.63 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 94.49 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 94.31 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 94.3 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 94.23 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 94.2 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 94.03 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 93.78 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 93.76 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 93.6 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 93.57 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 92.98 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 92.97 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 92.91 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 92.78 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 92.67 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 92.66 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 92.54 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 92.2 | |
| d2b7oa1 | 462 | Probable DAHP synthetase AroG, phenylalanine-repre | 91.99 | |
| d2fyma1 | 292 | Enolase {Escherichia coli [TaxId: 562]} | 91.98 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 91.85 | |
| d2al1a1 | 295 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 91.8 | |
| d2akza1 | 294 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 91.79 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 91.76 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.69 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 91.49 | |
| d1w6ta1 | 296 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 91.34 | |
| d2ptza1 | 291 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 90.85 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 90.81 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 89.89 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 89.72 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 89.52 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 88.65 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 88.5 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 88.39 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 88.26 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 87.5 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 87.29 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 87.18 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 86.43 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 86.42 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 86.14 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 85.83 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 85.68 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 85.03 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 84.81 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 84.76 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 84.73 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 84.64 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 84.09 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 83.41 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 82.96 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 82.9 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 81.73 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 81.61 | |
| d2g50a2 | 282 | Pyruvate kinase, N-terminal domain {Rabbit (Orycto | 81.61 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 80.91 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 80.72 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 80.28 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 80.09 |
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.2e-61 Score=453.24 Aligned_cols=242 Identities=30% Similarity=0.451 Sum_probs=230.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
++++.+|||||++||.++.+++|+.+++ +|+...+...|+ |||++|+|+|+| ++||++|+++.+++|+|++|+
T Consensus 92 ~~~l~lIAGPC~vES~e~~~~~A~~lke----~g~~~~r~g~fK--pRtsp~sf~g~g-~~gL~~l~~~k~~~glpvvTd 164 (338)
T d1vr6a1 92 NGYFTIIAGPCSVEGREMLMETAHFLSE----LGVKVLRGGAYK--PRTSPYSFQGLG-EKGLEYLREAADKYGMYVVTE 164 (338)
T ss_dssp TTEEEEEEECSBCCCHHHHHHHHHHHHH----TTCCEEECBSCC--CCCSTTSCCCCT-HHHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHH----hCccccccceec--ccccccccccch-HHHHHHHHHHHhhcCceeEEe
Confidence 4679999999999999999999999998 489888877777 899999999999 899999999999999999999
Q ss_pred ecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC--CC
Q 022892 94 VHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM--FG 171 (290)
Q Consensus 94 ~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~--~~ 171 (290)
++++.+++.+.+++|++|||||+|+|++||+++|+++|||+||+|+++|++||+.|+|++.+.||.+++|||||++ ++
T Consensus 165 V~~~~~~~~~~e~~DilQI~A~~~~n~~LL~~~g~t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~ 244 (338)
T d1vr6a1 165 ALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEK 244 (338)
T ss_dssp CSSGGGHHHHHHHCSEEEECGGGTTCHHHHHHHHTTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCC
T ss_pred ccchhhhhhhhceeeeEEechhhccCHHHHHHhhccCCcEEecCccccchhhhhhhHHHHHhcCCccceeeecccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985 35
Q ss_pred CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCC
Q 022892 172 YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPV 250 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~ 250 (290)
|+++.+|+++++.||+ +++||++|+||+. |+|++++.+++||+|+||||+|||+|++|++|++
T Consensus 245 ~~~~~lD~~~i~~~k~~~~lPVi~DpsHs~----------------G~r~~v~~larAAvA~GadGl~iE~Hp~P~~Als 308 (338)
T d1vr6a1 245 ATRNTLDISAVPIIRKESHLPILVDPSHSG----------------GRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALS 308 (338)
T ss_dssp SSSSBCCTTHHHHHHHHBSSCEEECHHHHH----------------CSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCSS
T ss_pred ccccchhhcccceeeccccCceeeCCCCCC----------------CchhHHHHHHHHHHHhCCCEEEEEeCCCcccCCC
Confidence 7777899999999998 8999999999984 8899999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhCCc
Q 022892 251 DGPTQWPLRNLEELLEELVAIAKVSKGK 278 (290)
Q Consensus 251 D~~~sl~p~~l~~lv~~ir~~~~~lg~~ 278 (290)
|++++|+|++|++|+++++++++++|.+
T Consensus 309 Dg~q~l~~~~~~~ll~~l~~i~~~vg~~ 336 (338)
T d1vr6a1 309 DGKQSLDFELFKELVQEMKKLADALGVK 336 (338)
T ss_dssp CGGGCBCHHHHHHHHHHHHHHHHHHTCE
T ss_pred CccccCCHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999863
|
| >d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=2.4e-57 Score=414.78 Aligned_cols=257 Identities=52% Similarity=0.801 Sum_probs=240.1
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC-CCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G-~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
++++|||||||+||.++++++|++|++++++++ ...|++.+|+|+|||++++|+|.|++.++++|.+..+++|+|++||
T Consensus 1 drllvIaGPCsies~e~~~~~A~~lk~~~~~~~~~~~i~r~~~~k~~RTs~~~f~g~G~~~~l~~l~~~~~~~glpi~tE 80 (263)
T d2a21a1 1 EKFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTD 80 (263)
T ss_dssp CCEEEEEECSBCCCHHHHHHHHHHHHHHHHHCTTEEEEEECBSCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEEEE
T ss_pred CceEEEecCCcCCCHHHHHHHHHHHHHHHHHhCcCceEEeccccCCCCCCccccCCCCchhHHHHHHHHHHhhCCceeee
Confidence 579999999999999999999999999999987 7788999999878999999999998889999999999999999999
Q ss_pred ecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Q 022892 94 VHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN 173 (290)
Q Consensus 94 ~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~ 173 (290)
++++.+++++.+++||+|||||+++|+++|+++|++++||+||+|+++++++|.+|++++.+.||+++++|+||++++|+
T Consensus 81 v~~~~~~~~~~d~vd~~qIGAr~~~~~~ll~~a~~~~~pV~~K~g~~~~~~~~~~a~e~~~~~G~~~v~~~eRg~~~g~~ 160 (263)
T d2a21a1 81 IHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYN 160 (263)
T ss_dssp CSSGGGHHHHHTTCSEEEECGGGTTCHHHHHHHHTTTSEEEEECCTTCCGGGGHHHHHHHHHTTCSSEEEEECCEECSTT
T ss_pred eccchhhhhhhhhceeeeehhhhccChHhHhhhhccCCcccccccccCchhhhhhhhHHHHhCCCceEEeeccceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCC
Q 022892 174 DLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253 (290)
Q Consensus 174 ~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~ 253 (290)
...+|+++.+.++. ..|+.+|++|++|.|+.. ...++|+++++..++++|+++|++|+|||+|++||++++|++
T Consensus 161 ~~~~~~r~~~~~~~-~~~~~~d~~~s~~~~~~~-----~~~s~g~~~~~~~~~~aaia~g~dGlmIEsHp~P~~AlsD~~ 234 (263)
T d2a21a1 161 NLVVDFRSLPIMKQ-WAKVIYDATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAS 234 (263)
T ss_dssp CEECCTTHHHHHTT-TSEEEEETTGGGEETTCS-----SSSCEECGGGHHHHHHHHHHHCCSEEEEEEESSGGGCSSCTT
T ss_pred cccccccccccccc-cccchhhhhhcccCCcCC-----ccccccccccccHhHHHHHHhCCCEEEEEeCCCcccCCCccc
Confidence 88899999887665 357889999998877643 334467899999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCC
Q 022892 254 TQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 254 ~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
++++|++|++|++.+++++++.+.
T Consensus 235 q~l~~~~l~~Ll~~l~~i~~~~~k 258 (263)
T d2a21a1 235 TQLPLSQLEGIIEAILEIREVASK 258 (263)
T ss_dssp TCEEGGGHHHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998754
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=100.00 E-value=2.2e-50 Score=370.91 Aligned_cols=240 Identities=14% Similarity=0.092 Sum_probs=215.3
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccC---------------CCCCh-h
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSF---------------RGPGM-V 73 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~---------------~g~~~-~ 73 (290)
.|+.++++|||||+|. ||+|++++|++|++.|+++|+++|+||.|..+...++..+ +...+ .
T Consensus 12 ~i~~~~~~~iIAEig~--NH~Gd~~~a~~lI~~a~~sGadaVKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 89 (280)
T d2zdra2 12 SVGYNHEPLIICEIGI--NHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNE 89 (280)
T ss_dssp EEETTSCCEEEEEEET--TTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCH
T ss_pred EeCCCCCcEEEEEecc--ccCCCHHHHHHHHHHHHHhCCCEEEecCcccchhcccccccccccccccccccccccccccc
Confidence 5788999999999999 9999999999999999999999999999864322222110 10111 4
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
+++..|.++|++.|+.|+++|||+.+++++.+ .++++||+|++++|++||++++++++||+|||||+ +++|+..|+++
T Consensus 90 ~~~~~l~~~~k~~~i~~~~s~fd~~s~~~~~~~~~~~~KIaS~d~~n~~Li~~i~k~~kpiiiStG~s-~~~EI~~av~~ 168 (280)
T d2zdra2 90 EDEIKLKEYVESKGMIFISTPFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGMN-SIESIKKSVEI 168 (280)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTC-CHHHHHHHHHH
T ss_pred hhhHHHHHHHHhcCCccccccchhhcccccccccccceeccchhccccHhhhhhhhccCceeeccccc-chhHhhhhhhh
Confidence 77889999999999999999999999999988 69999999999999999999999999999999999 99999999999
Q ss_pred HHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cC-CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH
Q 022892 153 VRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI 230 (290)
Q Consensus 153 i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~-~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAv 230 (290)
+...++ +++|+||.++||.+.+++||+.|..|++ |. ++||| |||+. | ..++.+|+
T Consensus 169 ~~~~~~-~~~llhc~s~YPt~~~~~nL~~i~~lk~~f~~~~iG~-SdH~~----------------g-----~~~~~~Av 225 (280)
T d2zdra2 169 IREAGV-PYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGL-SDHTL----------------D-----NYACLGAV 225 (280)
T ss_dssp HHHHTC-CEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEEEE-ECCSS----------------S-----SHHHHHHH
T ss_pred hhhccc-cceEEEeeccCccccccccccccceeeccccccceee-cCccc----------------c-----hhhHHHHH
Confidence 987765 7999999999888888999999999998 75 56899 99996 5 57888999
Q ss_pred HcCCCEEEEeeeCCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 231 AVGVDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 231 a~GA~G~~IEkH~t~dka~--~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
++||+ +||||||+||++ +||.+|++|+||++||+.+|.++.++|+
T Consensus 226 a~GA~--~IEKH~tl~k~~~g~D~~~Sl~p~e~~~~v~~i~~~~~~lG~ 272 (280)
T d2zdra2 226 ALGGS--ILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARGG 272 (280)
T ss_dssp HTTCC--EEEEEBCSCTTCCSTTGGGCBCHHHHHHHHHHHHHHHHHSCC
T ss_pred HCCCe--EEEEEEEeCCCCCCCchhccCCHHHHHHHHHHHHHHHHHcCC
Confidence 99998 999999999998 5999999999999999999999999999
|
| >d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.6e-50 Score=373.13 Aligned_cols=242 Identities=12% Similarity=0.104 Sum_probs=218.7
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCccc----------------CCCCCh-
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKS----------------FRGPGM- 72 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~----------------~~g~~~- 72 (290)
.||.++|+|||||+|. ||+|++++|++|++.|+++|||+|+||.|+.+...++.. ++.+.+
T Consensus 9 ~ig~~~~~~IIAEig~--nH~G~~~~ak~lI~~A~~sGAdaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~els 86 (295)
T d1vlia2 9 TVGKDAPVFIIAEAGI--NHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMP 86 (295)
T ss_dssp EEETTSCCEEEEEEET--TTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSC
T ss_pred EeCCCCCeEEEEEecC--CcCccHHHHHHHHHHHHHcCCCEEEEeeecchhceecccccccccCcccccccccchheecC
Confidence 5889999999999999 999999999999999999999999999998654333210 122223
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
.++|.+|.++|++.|+.|++||||..+++++.+ .++++||+|++++|.+||++++++++||++||||+ +++|+..+++
T Consensus 87 ~~~~~~l~~~~k~~gi~~~~s~fd~~s~~~l~~l~~~~iKIaS~d~~n~~Li~~i~k~~kpviistG~~-~~~ei~~~~~ 165 (295)
T d1vlia2 87 AEWILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIFSTAGA-EISDVHEAWR 165 (295)
T ss_dssp GGGHHHHHHHHHHTTCEEECBCCSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTC-CHHHHHHHHH
T ss_pred HHHhhhHHHHhhhcccceeeecccceeeeeecccCcceeEecccccccHHHHHHHHhcCCchheechhh-hhhhHHHHHh
Confidence 588999999999999999999999999999999 59999999999999999999999999999999999 9999999999
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 022892 152 KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 229 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aA 229 (290)
++...++.+++|+||+++||.+..++||..|..+++ + +++||| |||+. .| ..++.+|
T Consensus 166 ~~~~~~~~~i~llhc~s~YPt~~~~~nL~~i~~l~k~~~~~~vG~-SdHs~---------------~~-----~~~~~~A 224 (295)
T d1vlia2 166 TIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGF-SDHSE---------------HP-----TEAPCAA 224 (295)
T ss_dssp HHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEEE-EECCS---------------SS-----SHHHHHH
T ss_pred HhhhcccccEEEEeecccccccchhhhhhhhhhhhhhccccceee-ecccc---------------cc-----ccchhhh
Confidence 999999999999999999887778899999999977 4 799999 99984 13 4677889
Q ss_pred HHcCCCEEEEeeeCCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 230 IAVGVDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 230 va~GA~G~~IEkH~t~dka~--~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
+++||+ +||||||+|+++ +||.+|++|+||++||+.+|.++.++|+
T Consensus 225 ~~~Ga~--~IEkH~tl~~~~~g~D~~~Sl~p~e~~~~v~~ir~~~~~lg~ 272 (295)
T d1vlia2 225 VRLGAK--LIEKHFTIDKNLPGADHSFALNPDELKEMVDGIRKTEAELKQ 272 (295)
T ss_dssp HHTTCS--EEEEEBCSCTTSSCSSCTTSBCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcc--eeeEEEEecCCCCCCccccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999998 999999999998 5999999999999999999999999998
|
| >d1o60a_ c.1.10.4 (A:) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=4.6e-47 Score=336.50 Aligned_cols=248 Identities=44% Similarity=0.739 Sum_probs=212.4
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
.||.++|+|||||||+.|||++++++|++|+++|+++|+|+|+||+|.++.+++++.++.....++++++.+++++.++.
T Consensus 11 ~ig~~~~~~iIAei~~~~nh~g~l~~AkkLi~~A~~aGad~vKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (281)
T d1o60a_ 11 DVANDKPFVLFGGMNVLESRDMAMQVCEAYVKVTEKLGVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKDTFGVK 90 (281)
T ss_dssp EECTTSCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCE
T ss_pred EECCCCceEEEEeCCcccCHHHHHHHHHHHHHHHHHhCCCEEEecccccccccccccccccchHHHHHHHHHHHHHhccc
Confidence 47889999999999999999999999999999999999999999999987777777666555578999999999999999
Q ss_pred EEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 90 IVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
+++++++....+++.+.+++++|+++++.|.+++..++++++|+++++|+.....++..++.++.+.||..+..++|++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~s~g~~~~~~~~~~~~ 170 (281)
T d1o60a_ 91 IITDVHEIYQCQPVADVVDIIQLPAFLARQTDLVEAMAKTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTN 170 (281)
T ss_dssp EEEECCSGGGHHHHHTTCSEEEECGGGTTCHHHHHHHHHTTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEE
T ss_pred ccccccchhHHHHHHHhccccccccccchhhhhhhhhhcccCccccccccchhHHHHHHHHHHHHHhCCCcchhhhhccc
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999986
Q ss_pred CCCCCCCCCchhHHHHHh-------------------cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH
Q 022892 170 FGYNDLIVDPRNLEWMRE-------------------ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI 230 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~-------------------~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAv 230 (290)
+.+.....++.....+.. +...+++ ++|+. | ..++.+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~----------------~-----~~~~~aAv 228 (281)
T d1o60a_ 171 FGYDNLIVDMLGFSVMKKASKGSPVIFDVTHSLQCRDPFGAASS-GRRAQ----------------V-----TELARSGL 228 (281)
T ss_dssp CSTTCEECCTTHHHHHHHHTTSCCEEEEHHHHCC-------------CTT----------------H-----HHHHHHHH
T ss_pred cccccccchhhHHHHhhhhhhhhhhcccccchhhhhcccccccc-chhhH----------------H-----HHHHHHHH
Confidence 433222223222222211 2223433 55553 3 77889999
Q ss_pred HcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCcc
Q 022892 231 AVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQ 279 (290)
Q Consensus 231 a~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~~ 279 (290)
|+||+|+||||||||||+++||++||+|+||++||+.+|++++++|+.+
T Consensus 229 AlGA~a~vIEKHfTldk~~~D~~~Sl~p~elk~lv~~ir~ie~~iks~~ 277 (281)
T d1o60a_ 229 AVGIAGLFLEAHPNPNQAKCDGPSALPLSALEGFVSQMKAIDDLVKSFP 277 (281)
T ss_dssp HHCCSEEEEEEESSGGGCSSCCTTCEEGGGHHHHHHHHHHHHHHHHHSC
T ss_pred HhCCCEEEEEeCCCcccCCCchhhcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999998854
|
| >d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Escherichia coli, phenylalanine-regulated isozyme [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Escherichia coli, phenylalanine-regulated isozyme [TaxId: 562]
Probab=100.00 E-value=1.5e-34 Score=268.45 Aligned_cols=221 Identities=19% Similarity=0.226 Sum_probs=183.2
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCC----------ChhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGP----------GMVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~----------~~~~~l~~L 79 (290)
|.++|++||+||||||+.++++|||++|++++++.. +.+|||.||+| |||+.+ |+|+ .+.+||+..
T Consensus 42 g~D~RlLVVvGPCSIHD~~aa~eYA~rL~~l~~~~~d~l~iVMRvYfEK-PRTtvG-WKGli~DP~ldgs~~I~~Gl~~a 119 (343)
T d1n8fa_ 42 GNDDRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEK-PRTTVG-WKGLINDPHMDNSFQINDGLRIA 119 (343)
T ss_dssp TSCCCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTTTTEEEEEECCCCC-CCSSSS-CCCTTTCTTSSSCCCHHHHHHHH
T ss_pred CCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHHhhccceEEeeeecccC-CCccCC-cchhccCcccCCCcChhhhHHHH
Confidence 478999999999999999999999999999999997 67899999998 999975 7764 356898886
Q ss_pred HHHH---HhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH----
Q 022892 80 EKVK---IAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK---- 152 (290)
Q Consensus 80 ~~~~---~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~---- 152 (290)
+++. .++|+|+.+|.+|+...+|++|++.|..||||+...+...+.++.+.+||+||||+.|++.-..+|+..
T Consensus 120 R~ll~~i~~~glP~atE~Ld~i~pqY~~DLiswgaIGARttESQ~HRelaSgls~PVGfKN~t~G~i~~Aidai~aa~~~ 199 (343)
T d1n8fa_ 120 RKLLLDINDSGLPAAGEFLDMITPQYLADLMSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAP 199 (343)
T ss_dssp HHHHHHHHHTTCCEEEECCCSSTHHHHGGGCSEEEECTTTTTCHHHHHHHHTCSSCEEEECCTTCCSHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCccccccccCCchhHhhhhhhhhcccCcccchHHHHHHcCCCCceeeccCCCccHHHHHHHHHHhcCC
Confidence 6665 789999999999999999999999999999999987666566788999999999999999999999863
Q ss_pred --------------HHHcCCCcEEEEeecCC-CCCCCCCCCchhHHHHHhcCC--CEEEeCCCCCCCCCCCccCCCCccC
Q 022892 153 --------------VRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEWMREANC--PVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 153 --------------i~~~Gn~~i~L~~~gs~-~~y~~~~~dL~~i~~lk~~~~--pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
+.+.||++.|+++||.. ++|..+++. .+...|++.++ .|++||||+|.
T Consensus 200 H~Fl~~~~~G~~aiv~T~GN~~~HiILRGG~~PNY~~~~V~-~a~~~L~~~~l~~~imVDcSHgNS-------------- 264 (343)
T d1n8fa_ 200 HCFLSVTKWGHSAIVNTSGNGDCHIILRGGKEPNYSAKHVA-EVKEGLNKAGLPAQVMIDFSHANS-------------- 264 (343)
T ss_dssp CEEEEECTTSBEEEEEECCCSCEEEEECCSSSCCCSHHHHH-HHHHHHHHTTCCCCEEEECSGGGT--------------
T ss_pred CeEEeeCCCCceEeeeccCCCceeEEEEcCCCCCCCHHHHH-HHHHHHHHCCCCHHHhhhccCCcc--------------
Confidence 66889999999999986 457666666 56677777666 49999999972
Q ss_pred CCCcccHHHHHHHH---HHcC---CCEEEEeeeCCCCCCC
Q 022892 216 GGLRELIPCIARTA---IAVG---VDGVFMEVHDDPLNAP 249 (290)
Q Consensus 216 ~g~~~~~~~~a~aA---va~G---A~G~~IEkH~t~dka~ 249 (290)
...+..++.++... ++.| +.|+|||+|+...+..
T Consensus 265 ~Kd~~~Q~~V~~~v~~qi~~g~~~I~GvMiES~L~eG~Q~ 304 (343)
T d1n8fa_ 265 SKQFKKQMDVCADVCQQIAGGEKAIIGVMVESHLVEGNQS 304 (343)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCCSEEEEEEEBCSSSBBCC
T ss_pred cccHHHHHHHHHHHHHHHHcCCCeEEEEEEeecccccCCC
Confidence 23344444444332 3334 8899999999877654
|
| >d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]
Probab=100.00 E-value=3e-34 Score=266.34 Aligned_cols=221 Identities=19% Similarity=0.248 Sum_probs=177.8
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCC----------ChhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGP----------GMVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~----------~~~~~l~~L 79 (290)
|.|+|++||+||||||+.+.++|||++|++++++.. ..+|||.||+| |||+.+ |+|+ .+.+||+..
T Consensus 42 g~D~RlLVIvGPCSIHD~~aa~eYA~rL~~l~~~~~d~l~iVMRvYfEK-PRTtvG-WKGlinDP~ldgs~~i~~Gl~~a 119 (346)
T d1of8a_ 42 GKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEK-PRTTVG-WKGLINDPDVNNTFNINKGLQSA 119 (346)
T ss_dssp TSCCSEEEEEECSCCCCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCC-CCSSSS-CCCTTTCTTSSSCCCHHHHHHHH
T ss_pred CCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHHhhcCceEEEEeecccC-cccccC-ccccccccccCCCccHHHHHHHH
Confidence 478999999999999999999999999999999987 66899999998 999965 7764 356899887
Q ss_pred HHHH---HhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH----
Q 022892 80 EKVK---IAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK---- 152 (290)
Q Consensus 80 ~~~~---~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~---- 152 (290)
+++. .++|+|+.||++|+...+|++|++.|..||||++..+...+.++.+.+||+||||+.|++.-..+|+..
T Consensus 120 R~ll~~i~~~GlP~atE~Ldp~~pqY~~DLiswgAIGARTtESQ~HRelaSgls~PVGfKN~t~G~i~~Aidai~aa~~~ 199 (346)
T d1of8a_ 120 RQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHS 199 (346)
T ss_dssp HHHHHHHHTTTCCEEEECCSSSTHHHHGGGCSEEEECTTTTTCHHHHHHHHTCSSCEEEECCTTSCSHHHHHHHHHHTSC
T ss_pred HHHHHHHHhccCCchhhhccccChHHHHHHHhhcccccCccccHHHHHHHcCCCCceeeecCCCCCHHHHHHHHHHHcCC
Confidence 7665 789999999999999999999999999999999987666566788999999999999999999999863
Q ss_pred --------------HHHcCCCcEEEEeecCC--CCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCC
Q 022892 153 --------------VRLAGNPNVMVCERGTM--FGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASG 216 (290)
Q Consensus 153 --------------i~~~Gn~~i~L~~~gs~--~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~ 216 (290)
+.+.||++.|+++||++ ++|..++++ .+...|+..+-.|++||||+|. .
T Consensus 200 H~Fl~~~~~G~~~iv~T~GN~~~HiILRGG~~gpNyd~~~v~-~a~~~l~~~~~~imIDcSHgNS--------------~ 264 (346)
T d1of8a_ 200 HHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVA-EAKAQLPAGSNGLMIDYSHGNS--------------N 264 (346)
T ss_dssp CEEEEECTTSBEEEEEECCCSCEEEEECCCTTCCCCSHHHHH-HHHHHCCTTCCCEEEESSGGGG--------------T
T ss_pred CEEEEECCCCCEEEEEeCCCCcceEEEEccCCCCCcCHHHHH-HHHHHhhhcCCceEEecccccc--------------c
Confidence 56789999999999996 345444343 2333333345569999999972 2
Q ss_pred CCcccHHHHHHHH---HHcC---CCEEEEeeeCCCCCCC
Q 022892 217 GLRELIPCIARTA---IAVG---VDGVFMEVHDDPLNAP 249 (290)
Q Consensus 217 g~~~~~~~~a~aA---va~G---A~G~~IEkH~t~dka~ 249 (290)
..+..++.++... ++.| +.|+|||+|+...+..
T Consensus 265 Kd~~~Q~~V~~~v~~Qi~~G~~~I~GvMiES~L~eG~Q~ 303 (346)
T d1of8a_ 265 KDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQG 303 (346)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCCSEEEEEEEBCSSSBBCC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEEEEeecccccCCC
Confidence 3333334433322 3444 8899999999776653
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.0062 Score=53.80 Aligned_cols=142 Identities=10% Similarity=0.073 Sum_probs=96.8
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
+.|+++.++-+..++-.+||+-++..+++ ..+.+.++|+.+.. +.+|.| -.|.- +++|+.+.++.|..
T Consensus 6 ~~lr~ll~~~~~~~~~~~~D~~sA~~~e~~Gf~a~~~sg~~~sa-------~~~G~p---D~~~~-~~~e~~~~~~~i~~ 74 (289)
T d1muma_ 6 KAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAA-------GSLGLP---DLGIS-TLDDVLTDIRRITD 74 (289)
T ss_dssp HHHHHHHHHCSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHH-------TTSCCC---SSSCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEeecCCCHHHHHHHHHcCCCEEEhhHHHHHH-------HccCCC---CCCCC-ChHHHHHHHHHHhc
Confidence 56788888889999999999999887776 57877777654321 234554 12333 77777777765532
Q ss_pred cCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 156 AGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 156 ~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
. .++||++|.+.+- +|...-+....+.....|+.
T Consensus 75 a-------------------------------~~~Pvi~D~d~Gy---------------G~~~~~v~~~v~~~~~aGva 108 (289)
T d1muma_ 75 V-------------------------------CSLPLLVDADIGF---------------GSSAFNVARTVKSMIKAGAA 108 (289)
T ss_dssp H-------------------------------CCSCEEEECTTCS---------------SSSHHHHHHHHHHHHHHTCS
T ss_pred c-------------------------------cCCCeeecccccc---------------cccchHHHHHHHHHHHCCCC
Confidence 2 3689999999873 23233444556667789999
Q ss_pred EEEEeeeCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhCCc
Q 022892 236 GVFMEVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKVSKGK 278 (290)
Q Consensus 236 G~~IEkH~t~dka~-~D~~~sl~p~~l~~lv~~ir~~~~~lg~~ 278 (290)
|+.||-+..|.|.. .+++.-++ .++++..|+....+.++.
T Consensus 109 gi~iEDq~~pk~~g~~~~~~~~~---~~e~~~ki~aa~~a~~~~ 149 (289)
T d1muma_ 109 GLHIEDQVGAKRCGHRPNKAIVS---KEEMVDRIRAAVDAKTDP 149 (289)
T ss_dssp EEEEECBCCCSSTTCCSCCCBCC---HHHHHHHHHHHHHTCSST
T ss_pred EEEecCcccccccccccccceec---HHHHHHHHHHHHHhcCCc
Confidence 99999998776644 35555454 455677777777766653
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=96.33 E-value=0.032 Score=48.66 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=88.0
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..|+++.++-++.++-.+||.-++..+++ ..+.+.++|+.+ .+..|.|= .|.- |++|+...++.|..
T Consensus 6 ~~lr~l~~~~~~~~~p~~~Da~SAr~~e~aGf~a~~~ss~~~--------aas~G~pD---~~~l-t~~e~~~~~~~I~~ 73 (275)
T d1s2wa_ 6 TQLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSV--------SAQLGVRD---SNEA-SWTQVVEVLEFMSD 73 (275)
T ss_dssp HHHHHHHHSSSCEEEEEECSHHHHHHHHHHTCSCEEECCHHH--------HHTC-------------CHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEeecCcCHHHHHHHHHcCCCEEEhhHHHH--------HHHcCCCC---CCcc-chhhHHHHHHhhhc
Confidence 56888889899999999999999999887 688888888432 23456662 1333 78888888877632
Q ss_pred cCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 156 AGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 156 ~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
. .++||++|.+.+- |...-+....+.....||.
T Consensus 74 ~-------------------------------~~lPv~~D~d~Gy----------------G~~~~v~~tv~~~~~aGaa 106 (275)
T d1s2wa_ 74 A-------------------------------SDVPILLDADTGY----------------GNFNNARRLVRKLEDRGVA 106 (275)
T ss_dssp T-------------------------------CSSCEEEECCSSC----------------SSHHHHHHHHHHHHHTTCC
T ss_pred c-------------------------------cCCceeEeccccc----------------ccchHHHHHHHHHHHhccc
Confidence 2 3589999999873 4334444556667789999
Q ss_pred EEEEeeeCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 236 GVFMEVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 236 G~~IEkH~t~dka~-~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
|+.||-...|.+.- -+++. ......++++..++.......+
T Consensus 107 gi~iEDq~~pk~~~~~~~~~-~~~~~~~~~~~ki~aa~~~~~~ 148 (275)
T d1s2wa_ 107 GACLEDKLFPKTNSLHDGRA-QPLADIEEFALKIKACKDSQTD 148 (275)
T ss_dssp EEEEECBCC--------CTT-CCBCCHHHHHHHHHHHHHHCSS
T ss_pred eeEeeccccccccccccccc-cccccHHHHHHHHHhhhhhccC
Confidence 99999988776643 23221 1222344455566655555443
|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Bacillus anthracis [TaxId: 1392]
Probab=96.07 E-value=0.051 Score=47.35 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH----HHHHHHhcCCcEEEeecCcccHHHHh
Q 022892 29 EEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI----LEKVKIAYDIPIVTDVHETVQCEEVG 104 (290)
Q Consensus 29 ~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~----L~~~~~~~Gi~~~s~~~d~~~~~~l~ 104 (290)
.+.+++.|++|++ .||++|=-..-. |.|+ +....-++.++. +....+..++++-.+-+.++-++...
T Consensus 41 ~~~a~~~a~~~i~----~GAdiIDIGaeS----TrPg-~~~is~~eE~~rl~p~i~~~~~~~~~~iSIDT~~~~Va~~al 111 (273)
T d1tx2a_ 41 VDAAVRHAKEMRD----EGAHIIDIGGES----TRPG-FAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAI 111 (273)
T ss_dssp HHHHHHHHHHHHH----TTCSEEEEESCC---------CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----CCCCEEEeecee----cccc-ccccCHHHHHHhhchhHHhhhccceEEEehHHhhHHHHHHHH
Confidence 5678888888888 499998766433 2333 222222344443 45566778999988999999999887
Q ss_pred h-hcceec-ccCCccCCHHHHHHHHhcCCeEEEeCCCC--CC---H----HHHHHHHHHHHHcCC-CcEEEEeecCCCCC
Q 022892 105 K-VADIIQ-IPAFLCRQTDLLVAAAKTGKIINIKKGQF--CA---S----SVMVNSAEKVRLAGN-PNVMVCERGTMFGY 172 (290)
Q Consensus 105 ~-~~d~~k-Igs~~~~n~~lL~~~a~~~~PVilstG~~--~t---l----~e~~~Ave~i~~~Gn-~~i~L~~~gs~~~y 172 (290)
+ .++++= |.++. ....+++.+++.+.|+++.-... -+ . ....+-++.+.+.|- ++-+++.-|.-|+=
T Consensus 112 ~~G~~iINDvsg~~-~D~~m~~~~~~~~~~~vlmH~~~~~~~~~~~~~~~~~~~~~i~~~~~~GI~~~~IiiDPGiGFgK 190 (273)
T d1tx2a_ 112 EAGAHIINDIWGAK-AEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAK 190 (273)
T ss_dssp HHTCCEEEETTTTS-SCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSC
T ss_pred HcCCeEEecccccc-chhHHHHHHHhhcccccccccccccccccccchhhhhHHHHHHHHHHcCCChheEecCccCCccc
Confidence 7 688876 44433 45567788999999999975322 11 1 222333445666773 44566677764431
Q ss_pred CCCCCCc---hhHHHHHhcCCCEEEe
Q 022892 173 NDLIVDP---RNLEWMREANCPVVAD 195 (290)
Q Consensus 173 ~~~~~dL---~~i~~lk~~~~pV~~D 195 (290)
+ ..-|+ +.+..++++++||.+-
T Consensus 191 ~-~~~n~~ll~~i~~l~~~g~PilvG 215 (273)
T d1tx2a_ 191 T-PEQNLEAMRNLEQLNVLGYPVLLG 215 (273)
T ss_dssp C-HHHHHHHHHTGGGGGGGCSCBEEE
T ss_pred h-HHHHHHHHhhhcccccCCCcEEEE
Confidence 1 11232 3333344468998763
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=95.92 E-value=0.43 Score=40.97 Aligned_cols=214 Identities=18% Similarity=0.159 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH---HHHHHHhcCCcEEEeecCcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI---LEKVKIAYDIPIVTDVHETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~---L~~~~~~~Gi~~~s~~~d~~~~~~l~ 104 (290)
+.+.++..|++|++. ||++|=-..-. |.|+ ++....++.+.. +-+..++.++++-.+-+.++-+.+..
T Consensus 24 ~~~~a~~~~~~m~~~----GAdiIDIGaeS----TrPg-a~~is~~eE~~Rl~pvi~~l~~~~~~iSIDT~~~eVa~~al 94 (264)
T d1ad1a_ 24 NVESAVTRVKAMMDE----GADIIDVGGVS----TRPG-HEMITVEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACL 94 (264)
T ss_dssp SHHHHHHHHHHHHHT----TCSEEEEESCC----CSTT-CCCCCHHHHHHHHHHHHHHHTTSSSEEEEECSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC----CCCEEEECCcc----CCCC-CCcCCHHHHHHhhhhHhhhhcccCcccchhhhhHHHHHHHH
Confidence 678899999999985 99998776433 3333 222222344443 23444678999988999999999887
Q ss_pred h-hcceec-ccCCccCCHHHHHHHHhcCCeEEEeCCCC--CC---HHHHHHH----HHHHHHcCC-CcEEEEeecCCCCC
Q 022892 105 K-VADIIQ-IPAFLCRQTDLLVAAAKTGKIINIKKGQF--CA---SSVMVNS----AEKVRLAGN-PNVMVCERGTMFGY 172 (290)
Q Consensus 105 ~-~~d~~k-Igs~~~~n~~lL~~~a~~~~PVilstG~~--~t---l~e~~~A----ve~i~~~Gn-~~i~L~~~gs~~~y 172 (290)
+ .++++= |.++. .+..+++.+++.+.|+++---.. -+ ..|+..- ++.+...|- .+-+++.-|.-|+-
T Consensus 95 ~~Ga~iINDVs~g~-~d~~~~~~va~~~~~~ilmH~~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~IilDPGiGFgK 173 (264)
T d1ad1a_ 95 KLGVDIINDQWAGL-YDHRMFQVVAKYDAEIVLMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAK 173 (264)
T ss_dssp HTTCCEEEETTTTS-SCTHHHHHHHHTTCEEEEECCCCTTCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSC
T ss_pred hcCCcEeecccccc-ccccHHHHHhhcCcceeeeeeccccccCccchhhhhHHHHHHHHHHhhccccceEEeccCcCccc
Confidence 7 699887 64444 45578899999999999965322 01 2333332 334555663 34567777765543
Q ss_pred CCCCCCc---hhHHHHHhcCCCEEEeCCCC--CCCCCCCccCCCCccCCCCcccH-HHHHHHHHHcCCCEEEEeeeCCCC
Q 022892 173 NDLIVDP---RNLEWMREANCPVVADVTHS--LQQPAGKKLDGGGVASGGLRELI-PCIARTAIAVGVDGVFMEVHDDPL 246 (290)
Q Consensus 173 ~~~~~dL---~~i~~lk~~~~pV~~D~sHs--~~~~~~~~~~~~~~~~~g~~~~~-~~~a~aAva~GA~G~~IEkH~t~d 246 (290)
+.+ -|+ +.+..++.+++||.+-.|.= ++.. .|...+...|... ..+...|+..||+ +|=.|
T Consensus 174 t~~-~n~~ll~~l~~~~~~g~PiLiG~SRKsfig~l------~g~~~~~~~r~~~t~a~~~~a~~~Ga~--iiRvH---- 240 (264)
T d1ad1a_ 174 TRN-EEAEVMARLDELVATEYPVLLATSRKRFTKEM------MGYDTTPVERDEVTAATTAYGIMKGVR--AVRVH---- 240 (264)
T ss_dssp CHH-HHHHHHHCHHHHHTTCSCBEECCTTSHHHHTT------SSSCCCGGGGHHHHHHHHHHHHHHTCC--EEEES----
T ss_pred cch-hHHHHHHHHHHhhccCCceeeeccHHHHHHHH------hCCCCChHHhhHHHHHHHHHHHHCCCC--EEEeC----
Confidence 221 132 34444555789997733320 0000 0000000112111 1122234557998 99999
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 247 NAPVDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 247 ka~~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
+..+.+++++-++.+++.
T Consensus 241 ----------DV~e~~~~~~v~~~l~~~ 258 (264)
T d1ad1a_ 241 ----------NVELNAKLAKGIDFLKEN 258 (264)
T ss_dssp ----------CHHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHhh
Confidence 566777777766666553
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.56 E-value=0.046 Score=47.09 Aligned_cols=84 Identities=11% Similarity=0.064 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccC----CHHH-HHHHHh--cCCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCR----QTDL-LVAAAK--TGKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~----n~~l-L~~~a~--~~~PVilstG~~~tl~ 144 (290)
.+.++.|.++|+++|+.++.|++++++++...+ ..+++-|-.|++. +..- ++.+.. .+.+++-..|.. |.+
T Consensus 138 ~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~~a~iIGINnRnL~t~~vd~~~~~~L~~~ip~~~~~IaESGI~-t~~ 216 (247)
T d1a53a_ 138 ERELESLLEYARSYGMEPLIEINDENDLDIALRIGARFIGINSRDLETLEINKENQRKLISMIPSNVVKVAESGIS-ERN 216 (247)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHHTTCSEEEEESBCTTTCCBCHHHHHHHHHHSCTTSEEEEESCCC-CHH
T ss_pred HHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHhCCCCeEeeeccChhhhhhhhhHHHHHHhhCCCCCeEEEecCCC-CHH
Confidence 468999999999999999999999999999887 6999999888883 3322 222232 367888888998 999
Q ss_pred HHHHHHHHHHHcCCCcE
Q 022892 145 VMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i 161 (290)
++.. +.+.|-+-+
T Consensus 217 dv~~----l~~~G~dav 229 (247)
T d1a53a_ 217 EIEE----LRKLGVNAF 229 (247)
T ss_dssp HHHH----HHHTTCCEE
T ss_pred HHHH----HHHCCCCEE
Confidence 8886 455665433
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=95.34 E-value=0.76 Score=39.78 Aligned_cols=156 Identities=20% Similarity=0.179 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH----HHHHHHHhcCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK----ILEKVKIAYDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~----~L~~~~~~~Gi~~~s~~~d~~~~~~l 103 (290)
+.+.+++.|++|++. ||+++=-..-. |.|+ +.....++.+. .++.+.++.++++-.+-|.++-++..
T Consensus 36 ~~~~a~~~a~~mi~~----GAdiIDIGgeS----TrPg-a~~vs~eeE~~Rl~pvi~~l~~~~~~~iSIDT~~~eVa~~a 106 (282)
T d1ajza_ 36 SLIDAVKHANLMINA----GATIIDVGGES----TRPG-AAEVSVEEELQRVIPVVEAIAQRFEVWISVDTSKPEVIRES 106 (282)
T ss_dssp HHHHHHHHHHHHHHH----TCSEEEEESSC----CSTT-CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC----CCCEEEECCcc----cccc-ccCCcHHHHHHHHHHHHHHHhhcccceEEEEecChHHHHHH
Confidence 467889999999885 99998776544 3333 22222234433 35556678899888899999988887
Q ss_pred hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCC--C---------C-----HHHHHHHHHHHHHcCC-CcEEEEe
Q 022892 104 GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF--C---------A-----SSVMVNSAEKVRLAGN-PNVMVCE 165 (290)
Q Consensus 104 ~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~--~---------t-----l~e~~~Ave~i~~~Gn-~~i~L~~ 165 (290)
.+ .++++===|+. ++.++++.+++.+.|+++..-.. . + .+...+-++.+.+.|- .+=+++.
T Consensus 107 l~~Ga~iINDvsg~-~~~~~~~~va~~~~~~vlmh~~g~p~~~~~~~~y~dv~~~v~~~~~~~~~~~~~~GI~~~~IilD 185 (282)
T d1ajza_ 107 AKVGAHIINDIRSL-SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLD 185 (282)
T ss_dssp HHTTCCEECCTTTT-CSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred HhcCceEEechhhc-ccchhHHHhhccCceEEEeccCCCccccccCCcccchhhhhHHHHHHHHHHHHHcCCcHhhEecC
Confidence 76 68887544443 45577888999999998864221 0 1 1333444566777884 3456778
Q ss_pred ecCCCCCCCCCCCchhHHHH---HhcCCCEEE
Q 022892 166 RGTMFGYNDLIVDPRNLEWM---REANCPVVA 194 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~l---k~~~~pV~~ 194 (290)
-|.-|+-+. .-|+.-+..+ +.+++||.+
T Consensus 186 PGiGFgK~~-~~n~~ll~~l~~~~~~~~PiLv 216 (282)
T d1ajza_ 186 PGFGFGKNL-SHNYSLLARLAEFHHFNLPLLV 216 (282)
T ss_dssp CCTTSSCCH-HHHHHHHHTGGGGGGGCSCBEE
T ss_pred CCcCcCCCh-hhhHHHHhhcchhhccccceEE
Confidence 887654322 2233333333 336889876
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=95.29 E-value=0.086 Score=44.98 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhcCCcEEEeecC-------cccHHHH-------hh-hcceecccCCccCCH-HHHHHH-HhcCCeEEEe
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHE-------TVQCEEV-------GK-VADIIQIPAFLCRQT-DLLVAA-AKTGKIINIK 136 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d-------~~~~~~l-------~~-~~d~~kIgs~~~~n~-~lL~~~-a~~~~PVils 136 (290)
+.+..+.+-|+++|||++.+++- ..+.+++ .+ .+|++|+.-- .|. .+.+.+ +....||++.
T Consensus 123 ~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~~~p--~~~~~~~~~v~~a~~~pv~~~ 200 (251)
T d1ojxa_ 123 EELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYT--GDPKTFSWAVKVAGKVPVLMS 200 (251)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEECCC--SSHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEEecCC--CcHHHHHHHHHhcCCCceEEe
Confidence 34556778889999999999873 2233333 23 3899998544 333 333333 4567899999
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCCcEEEEeec
Q 022892 137 KGQFC-ASSVMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 137 tG~~~-tl~e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
=|... +.+++++.++.....|.. =+++=|.
T Consensus 201 gG~~~~~~~~~l~~~~~a~~~Ga~-G~~~GRn 231 (251)
T d1ojxa_ 201 GGPKTKTEEDFLKQVEGVLEAGAL-GIAVGRN 231 (251)
T ss_dssp CCSCCSSHHHHHHHHHHHHHTTCC-EEEESHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCc-EEeechh
Confidence 88764 788999998887777763 3444443
|
| >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.28 E-value=0.33 Score=41.80 Aligned_cols=157 Identities=11% Similarity=0.047 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH---HHHHHHhcCCcEEEeecCcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI---LEKVKIAYDIPIVTDVHETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~---L~~~~~~~Gi~~~s~~~d~~~~~~l~ 104 (290)
+.+.+++.|++|++. ||+++=-.... |.|++ .....++.+.. +-+..++.++++-.+-|.++-++...
T Consensus 23 ~~~~a~~~a~~~~~~----GAdiIDIGgeS----TrPga-~~is~~eE~~Rl~p~i~~~~~~~~~iSIDT~~~~Va~~al 93 (270)
T d1eyea_ 23 DLDDAVKHGLAMAAA----GAGIVDVGGES----SRPGA-TRVDPAVETSRVIPVVKELAAQGITVSIDTMRADVARAAL 93 (270)
T ss_dssp SHHHHHHHHHHHHHT----TCSEEEEECC-------------------HHHHHHHHHHHHHTTCCEEEECSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC----CCCEEEECCcc----CCCCC-EeeechhhcccccceeeeecccceeechHhhhHHHHHHHH
Confidence 678899999999985 99998776554 22331 11111233332 33445777999888999999888877
Q ss_pred h-hcceec-ccCCccCCHHHHHHHHhcCCeEEEeCCCC--C-------C----HH----HHHHHHHHHHHcCC-CcEEEE
Q 022892 105 K-VADIIQ-IPAFLCRQTDLLVAAAKTGKIINIKKGQF--C-------A----SS----VMVNSAEKVRLAGN-PNVMVC 164 (290)
Q Consensus 105 ~-~~d~~k-Igs~~~~n~~lL~~~a~~~~PVilstG~~--~-------t----l~----e~~~Ave~i~~~Gn-~~i~L~ 164 (290)
+ .++++= |.++. .+..+++.+++.+.|+++.-... . . ++ +...-++.+...|- .+-+++
T Consensus 94 ~~Ga~iINDvsg~~-~d~~m~~~~a~~~~~~vlmh~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gi~~~~Iil 172 (270)
T d1eyea_ 94 QNGAQMVNDVSGGR-ADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVL 172 (270)
T ss_dssp HTTCCEEEETTTTS-SCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred hcCCeEEEeccccc-cchhHHhhhhhcccceeeeeccccccccccccccccchhhhhhhHHHHHHHHHHhccccceEEEE
Confidence 7 799887 76665 34456778899999999865322 0 1 12 22233344556663 345777
Q ss_pred eecCCCCCCCCCCCc---hhHHHHHhcCCCEEEe
Q 022892 165 ERGTMFGYNDLIVDP---RNLEWMREANCPVVAD 195 (290)
Q Consensus 165 ~~gs~~~y~~~~~dL---~~i~~lk~~~~pV~~D 195 (290)
.-|.-|+.+. .-|+ +.++.++.+++||.+-
T Consensus 173 DPGiGFgKt~-~~n~~lL~~l~~~~~~g~PiLvG 205 (270)
T d1eyea_ 173 DPGLGFAKTA-QHNWAILHALPELVATGIPVLVG 205 (270)
T ss_dssp ECCTTSSCCH-HHHHHHHHTHHHHHTTSSCBEEC
T ss_pred ccccccCccc-chHHHHHHHHHhhccCCCceEEe
Confidence 8887654322 1233 3444455578998763
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=95.10 E-value=0.85 Score=38.95 Aligned_cols=205 Identities=13% Similarity=0.131 Sum_probs=117.7
Q ss_pred chhhHHhhhcCCCCeEEEEccC-CccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcc------------c-CC
Q 022892 3 PSTALFNQLKAAEPFFLLAGPN-VIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSK------------S-FR 68 (290)
Q Consensus 3 ~~~~~~~~i~~~~~~~iIAgpc-sien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~------------~-~~ 68 (290)
|-...|......++..+|+=.. .--|.+..++.++.|.+ +|+|++=.+. |-+.|. + -.
T Consensus 3 ~i~~~f~~~~~~~~~~li~y~~aG~P~~~~~~~~l~~l~~----~G~DiiElGi----PfSDP~aDGpvIq~a~~rAL~~ 74 (261)
T d1rd5a_ 3 PVSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDG----CGADVIELGV----PCSDPYIDGPIIQASVARALAS 74 (261)
T ss_dssp CHHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHH----TTCSSEEEEC----CCSCCTTSCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCCCeEEEEEeCcCCCHHHHHHHHHHHHH----cCCCEEEECC----CCCCcCcCCcceeeeeeecccc
Confidence 3455677777656544444222 12256777777777777 6999987664 223232 0 12
Q ss_pred CCChhHHHHHHHHHHHhcCCcEEEeec-Cc---ccHHHHhh-hcceecccCCcc-CCHHHHHHHHhcCC-eEEEeCCCCC
Q 022892 69 GPGMVEGLKILEKVKIAYDIPIVTDVH-ET---VQCEEVGK-VADIIQIPAFLC-RQTDLLVAAAKTGK-IINIKKGQFC 141 (290)
Q Consensus 69 g~~~~~~l~~L~~~~~~~Gi~~~s~~~-d~---~~~~~l~~-~~d~~kIgs~~~-~n~~lL~~~a~~~~-PVilstG~~~ 141 (290)
|..+++-++++++++++..+|++---+ ++ ..++.+.+ .+|-+-|+---. ...++.+.+.+.+. +|.|=+.++
T Consensus 75 G~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt- 153 (261)
T d1rd5a_ 75 GTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAI- 153 (261)
T ss_dssp TCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTS-
T ss_pred CcchhhhhhhhhcccccccCceeeeeeecchhhHHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCC-
Confidence 444567788899998888888864222 11 22344444 577666655333 35567777777777 556666666
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEee-cCCCCCCC-CCCC-chhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCC
Q 022892 142 ASSVMVNSAEKVRLAGNPNVMVCER-GTMFGYND-LIVD-PRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGG 217 (290)
Q Consensus 142 tl~e~~~Ave~i~~~Gn~~i~L~~~-gs~~~y~~-~~~d-L~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g 217 (290)
+.+-+...++ ..+.-|-++-+ |+. +-.. ..-+ -..+..+|+ +++||.+- -++ ..
T Consensus 154 ~~~Ri~~i~~----~a~gFvY~vs~~GvT-G~~~~~~~~~~~~i~~ik~~t~~Pi~vG--FGI---------------~~ 211 (261)
T d1rd5a_ 154 PEDRMKEITK----ASEGFVYLVSVNGVT-GPRANVNPRVESLIQEVKKVTNKPVAVG--FGI---------------SK 211 (261)
T ss_dssp CHHHHHHHHH----HCCSCEEEECSSCCB-CTTSCBCTHHHHHHHHHHHHCSSCEEEE--SCC---------------CS
T ss_pred chhHHHHHHh----cCcchhhhhhccCcc-cccccchhHHHHHHHHhhhccCCCeEEE--cCC---------------CC
Confidence 6667766554 22333444333 332 1111 0011 246667787 78997651 111 12
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 218 LRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 218 ~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+.-+......||||+|+=+++
T Consensus 212 -----~e~v~~~~~~gaDGvIVGSai 232 (261)
T d1rd5a_ 212 -----PEHVKQIAQWGADGVIIGSAM 232 (261)
T ss_dssp -----HHHHHHHHHTTCSEEEECHHH
T ss_pred -----HHHHHHHHhcCCCEEEECHHH
Confidence 444555566799999999987
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.094 Score=45.24 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCH--------HHHHHHHhcCCeEEEeCCCCCCH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQT--------DLLVAAAKTGKIINIKKGQFCAS 143 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~--------~lL~~~a~~~~PVilstG~~~tl 143 (290)
.+.++.|.++|+++|+.++.|+||.++++...+ ..+++-|-.|++..+ .|...+ ..+..++-..|.. |.
T Consensus 143 ~~~l~~l~~~a~~lgl~~LVEvh~~~El~~a~~~~a~iIGINnRnL~tf~vd~~~t~~L~~~i-p~~~~~VsESGI~-~~ 220 (254)
T d1piia2 143 DDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKL-GHNVTVISESGIN-TY 220 (254)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEEESEETTTTEECTHHHHHHHHHH-CTTSEEEEESCCC-CH
T ss_pred ccHHHHHHHHHHHHhhhHHHhhccHHHHHHHHhhcccccCccccchhhhhhhhHHHHHHHHhC-CCCCEEEEcCCCC-CH
Confidence 468999999999999999999999999999877 699999999988422 233333 2366777788988 88
Q ss_pred HHHHH
Q 022892 144 SVMVN 148 (290)
Q Consensus 144 ~e~~~ 148 (290)
+++..
T Consensus 221 ~d~~~ 225 (254)
T d1piia2 221 AQVRE 225 (254)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=94.66 E-value=0.066 Score=41.98 Aligned_cols=71 Identities=10% Similarity=0.049 Sum_probs=58.8
Q ss_pred HHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 81 KVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 81 ~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
++++++|+++. ...+.+.+.+|++-|.+..-.+.++..++.+.||+|++.+.++.+++|....++.....|
T Consensus 42 ~~~~~~~~~~~------~~~~~l~~~~D~V~I~tp~~~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~ 112 (164)
T d1tlta1 42 PICESWRIPYA------DSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKK 112 (164)
T ss_dssp HHHHHHTCCBC------SSHHHHHTTCSEEEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTT
T ss_pred hhhhccccccc------ccchhhhhhcccccccccchhccccccccccccceeeccccccCCHHHHHHHHHHHHHcC
Confidence 45567788753 235555567999999999989999999999999999999999999999999999877654
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.63 E-value=0.39 Score=38.90 Aligned_cols=96 Identities=15% Similarity=0.040 Sum_probs=51.0
Q ss_pred HHHHHHHhc-CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCchhHHHHHhcCCCEEEeCCC
Q 022892 121 DLLVAAAKT-GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWMREANCPVVADVTH 198 (290)
Q Consensus 121 ~lL~~~a~~-~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i~~lk~~~~pV~~D~sH 198 (290)
++++.+... ..++++. +.. |.++.+.+. ..|-+-+.+-.++... .......++......+..++||+.+..=
T Consensus 119 ~~~~~~~~~~~~~~v~~-~v~-t~~~a~~a~----~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI 192 (230)
T d1yxya1 119 SFIRQVKEKYPNQLLMA-DIS-TFDEGLVAH----QAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKI 192 (230)
T ss_dssp HHHHHHHHHCTTCEEEE-ECS-SHHHHHHHH----HTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHhcCCCceEec-CCC-CHHHHHHHH----hcCCCEEEeecccccccccccchHHHHHHHHHhcCCCeEEEeCCC
Confidence 455555443 3444444 555 888887764 3565444333333321 1111122222222223378999986432
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 199 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 199 s~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.. +.-+..+.++||+|++|=+-++
T Consensus 193 ~t----------------------~~d~~~al~~GAd~V~vGsAi~ 216 (230)
T d1yxya1 193 HS----------------------PEEAKKINDLGVAGIVVGGAIT 216 (230)
T ss_dssp CS----------------------HHHHHHHHTTCCSEEEECHHHH
T ss_pred CC----------------------HHHHHHHHHcCCCEEEEChhhc
Confidence 21 2334456889999999987653
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=94.49 E-value=0.059 Score=47.35 Aligned_cols=108 Identities=12% Similarity=0.108 Sum_probs=72.9
Q ss_pred ccCCccCCHHHHHHH-----HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHH
Q 022892 112 IPAFLCRQTDLLVAA-----AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMR 186 (290)
Q Consensus 112 Igs~~~~n~~lL~~~-----a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk 186 (290)
-||..+.+.+++..+ ..++.||-+|+-...+-++...-+..+...|-.-+++-=|+-.-.|.. ..|...|..++
T Consensus 99 ~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~-~a~~~~i~~~~ 177 (305)
T d1vhna_ 99 AGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTG-RAEWKALSVLE 177 (305)
T ss_dssp CGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSS-CCCGGGGGGSC
T ss_pred cceeeccCHHHHHHHhhhhhhhcccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhhhcccc-chhhhHHHhhh
Confidence 588899999877543 357999999998866666666667777888886666555544333432 35777877776
Q ss_pred hcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH-HcCCCEEEEeeeC
Q 022892 187 EANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI-AVGVDGVFMEVHD 243 (290)
Q Consensus 187 ~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAv-a~GA~G~~IEkH~ 243 (290)
+ .+||+++.+=. . ..-+.... ..|+||+||=+-.
T Consensus 178 ~-~ipvi~NGdI~-----------------s-----~~d~~~~l~~tg~dgVMiGRga 212 (305)
T d1vhna_ 178 K-RIPTFVSGDIF-----------------T-----PEDAKRALEESGCDGLLVARGA 212 (305)
T ss_dssp C-SSCEEEESSCC-----------------S-----HHHHHHHHHHHCCSEEEESGGG
T ss_pred h-hhhhhcccccc-----------------c-----HHHHHHHHHhcCCCeEehhHHH
Confidence 4 68998854432 1 22233333 3699999998764
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.14 Score=43.81 Aligned_cols=150 Identities=12% Similarity=0.086 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcc------------------cCCCCChhHHHHHHHHHHHhcC--
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSK------------------SFRGPGMVEGLKILEKVKIAYD-- 87 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~------------------~~~g~~~~~~l~~L~~~~~~~G-- 87 (290)
+++.-.++.+.+++++++.|-..-....+.- |--+.. ||-. -.+.+..+++++++.|
T Consensus 39 ~~~~~~~~i~~ir~~~~~~~~~~~I~~Dl~g-p~ltekD~~~i~~a~~~~vD~ialSFVr--~~~Dv~~~r~~l~~~~~~ 115 (246)
T d1e0ta2 39 DYAEHGQRIQNLRNVMSKTGKTAAILLDTKG-PALAEKDKQDLIFGCEQGVDFVAASFIR--KRSDVIEIREHLKAHGGE 115 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCEEEEECCC-CSSCHHHHHHHHHHHHHTCSEEEESSCC--SHHHHHHHHHHHHTTTCT
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcccccccc-cccccCcchhhhHHHHcCCCEEEEcCCC--CHHHHHHHHHHHHHhCCC
Confidence 5666677777777777777744322222221 111110 1211 1366888999998764
Q ss_pred -CcEEEeecCcccHHHHhh---hcceecccCCcc-----------CCHHHHHHHHhcCCeEEEeCCCCC--------CHH
Q 022892 88 -IPIVTDVHETVQCEEVGK---VADIIQIPAFLC-----------RQTDLLVAAAKTGKIINIKKGQFC--------ASS 144 (290)
Q Consensus 88 -i~~~s~~~d~~~~~~l~~---~~d~~kIgs~~~-----------~n~~lL~~~a~~~~PVilstG~~~--------tl~ 144 (290)
+.+++-+-.++.++-+.+ ..|.+-|+=+++ .|..+++.+-..+|||++.|.|-- |-.
T Consensus 116 ~~~iiaKIE~~~al~nldeIi~~sDgImIaRGDLg~ei~~e~vp~~Qk~ii~~~~~~~kpvi~ATq~LeSM~~~p~PTRA 195 (246)
T d1e0ta2 116 NIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATMMLDSMIKNPRPTDA 195 (246)
T ss_dssp TCEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCEEEEECC---------CCCHH
T ss_pred CceEEEEecchhhhhchHHHHhhcceEEEEccchhhhCCHHHHHHHHHHHHHHHHHhCCCEEEehhhhhhhhcCCCCchH
Confidence 679999999888887766 488888887765 344566777788999999998853 567
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHH
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMR 186 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk 186 (290)
|+-..+..+. .|-+-++|..-+..-.||. .++.+|+
T Consensus 196 Ev~Dv~nav~-dG~D~vmLs~ETa~G~~P~-----~~v~~l~ 231 (246)
T d1e0ta2 196 EAGDVANAIL-DGTDAVMLSGESAKGKYPL-----EAVSIMA 231 (246)
T ss_dssp HHHHHHHHHH-HTCSEEEECCC------CH-----HHHHHHH
T ss_pred HHHHHHHHHH-hCCcEEEEccccccCCCHH-----HHHHHHH
Confidence 8877777765 4666666654443324775 4555554
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=94.30 E-value=0.82 Score=37.06 Aligned_cols=175 Identities=17% Similarity=0.166 Sum_probs=100.2
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH 95 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~ 95 (290)
++|+|.-+-. .+ .++..+++.+ .|+++|-.- .| .. +.. ...+..+.+++.|+++|++++-.
T Consensus 7 ~ly~ITd~~~-~~---~~~~v~~~l~----~Gv~~vqlR--~k-~~-~~~-----e~~~~a~~l~~i~~~~~~~liin-- 67 (206)
T d1xi3a_ 7 KLYVITDRRL-KP---EVESVREALE----GGATAIQMR--IK-NA-PTR-----EMYEIGKTLRQLTREYDALFFVD-- 67 (206)
T ss_dssp SEEEECCTTT-SC---HHHHHHHHHH----TTCSEEEEC--CC-SC-CHH-----HHHHHHHHHHHHHHHTTCEEEEE--
T ss_pred eEEEEeCCcc-cC---HHHHHHHHHH----cCCCEEEEc--CC-CC-CHH-----HHHHHHHHHHHHHHHcCCeEEec--
Confidence 5888886653 22 3455555444 699877321 11 00 000 01345667999999999999853
Q ss_pred CcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCC
Q 022892 96 ETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYN 173 (290)
Q Consensus 96 d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~ 173 (290)
..++...+ .+|-+-+|..+... ...+.. ..++-++ .... +.+|+..|.+ .|-+.+.+-..-.+. ...
T Consensus 68 --d~~~lA~~~~adGvHl~~~~~~~-~~~~~~-~~~~iig--~s~h-~~~e~~~a~~----~g~DYi~~gpvf~T~tk~~ 136 (206)
T d1xi3a_ 68 --DRVDVALAVDADGVQLGPEDMPI-EVAKEI-APNLIIG--ASVY-SLEEALEAEK----KGADYLGAGSVFPTKTKED 136 (206)
T ss_dssp --SCHHHHHHHTCSEEEECTTSCCH-HHHHHH-CTTSEEE--EEES-SHHHHHHHHH----HTCSEEEEECSSCC----C
T ss_pred --hhHHHHHhccCceEeeccccccH-hhhhhc-ccccccc--cccC-CHHHHHHHHh----cCCCEEEeccccccccccc
Confidence 34455555 58889999988753 222222 2233343 3334 8999888754 466777776543221 011
Q ss_pred CCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 174 DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 174 ~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
...+.+..+..+.+ ..+||+.- ||.. ..-...+...||+|+.+=+-+
T Consensus 137 ~~~~g~~~l~~~~~~~~~Pv~Ai--------------------GGI~---~~ni~~~~~~Ga~gvAvis~I 184 (206)
T d1xi3a_ 137 ARVIGLEGLRKIVESVKIPVVAI--------------------GGIN---KDNAREVLKTGVDGIAVISAV 184 (206)
T ss_dssp CCCCHHHHHHHHHHHCSSCEEEE--------------------SSCC---TTTHHHHHTTTCSEEEESHHH
T ss_pred cccccHHHHHHHHHhcCCCEEEE--------------------CCCC---HHHHHHHHHhCCCEEEEhHHH
Confidence 12356677777766 78998652 1100 001334578899998776654
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=94.23 E-value=0.081 Score=46.04 Aligned_cols=115 Identities=10% Similarity=0.086 Sum_probs=70.4
Q ss_pred HcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecC-------cc----cH----HHHhh-hcc
Q 022892 45 KVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE-------TV----QC----EEVGK-VAD 108 (290)
Q Consensus 45 ~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d-------~~----~~----~~l~~-~~d 108 (290)
+.|+++|+.-.|.- |-.... . ..+.++.+.+.|++.|+|++.+++- .. .+ ..+.+ .+|
T Consensus 117 ~~GadaVk~lv~~~-~d~~~e-~----~~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaD 190 (291)
T d1to3a_ 117 RDGAKALKLLVLWR-SDEDAQ-Q----RLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGAD 190 (291)
T ss_dssp HTTCCEEEEEEEEC-TTSCHH-H----HHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCS
T ss_pred hccCceEEEEEeeC-CcccHH-H----HHHHHHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCc
Confidence 36999998876652 111100 0 1245677889999999999999872 11 12 12234 488
Q ss_pred eecccC-Ccc-CC-----HHHHHHHHhcCCe-EEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 109 IIQIPA-FLC-RQ-----TDLLVAAAKTGKI-INIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 109 ~~kIgs-~~~-~n-----~~lL~~~a~~~~P-VilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
++|+-- ++. .. ..+.+..+..+.| |+|+.|. +.+++...++...+.|. .=+++=|..
T Consensus 191 i~K~~~p~~~~~~~~~~~~~~~~~~~~~~~p~vvLs~G~--~~~~f~~~l~~A~~aGa-~G~~~GR~i 255 (291)
T d1to3a_ 191 LYKVEMPLYGKGARSDLLTASQRLNGHINMPWVILSSGV--DEKLFPRAVRVAMEAGA-SGFLAGRAV 255 (291)
T ss_dssp EEEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEECCTTS--CTTTHHHHHHHHHHTTC-CEEEESHHH
T ss_pred EEEEecCCCchhhhHHHHHHHHHHhhcCCCcEEEEeCCC--CHHHHHHHHHHHHHCCC-eEEEeChhh
Confidence 887753 111 11 1244456677999 7777774 57888888887777775 445554443
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.20 E-value=1.4 Score=37.51 Aligned_cols=222 Identities=13% Similarity=0.069 Sum_probs=123.7
Q ss_pred HhhhcCCCCeEEEEccCCc------------cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH
Q 022892 8 FNQLKAAEPFFLLAGPNVI------------ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75 (290)
Q Consensus 8 ~~~i~~~~~~~iIAgpcsi------------en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~ 75 (290)
++.+.. ++|.+|-|-+-. .|.+..++.|++.++ .||+++=-.. .+ +. - -+ .+-
T Consensus 7 ~~~~~~-~~f~iIGEriN~tg~k~~~~~~~~~d~d~~~~~A~~qv~----~GA~iLDIn~----~~--~~-~--~e-~~~ 71 (260)
T d3bofa1 7 SKLVTF-DHFVVIGERINPAGRKKLWAEMQKGNEEIVIKEAKTQVE----KGAEVLDVNF----GI--ES-Q--ID-VRY 71 (260)
T ss_dssp SCEEES-SSCEEEEEEECCTTCHHHHHHHHTTCSHHHHHHHHHHHH----TTCSEEEEEC----SS--GG-G--SC-HHH
T ss_pred ceeecC-CCcEEEEeeCchhhHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCEEEeec----CC--ch-h--hh-HHH
Confidence 445545 457777765532 122445566666665 6999864421 01 00 0 11 234
Q ss_pred HHH-HHHHHHhcCCcEEEeecCcccHHHHhh---hccee-cccCCccCCHHHHHHHHhcCCeEEE---eCCCCCCHHHHH
Q 022892 76 LKI-LEKVKIAYDIPIVTDVHETVQCEEVGK---VADII-QIPAFLCRQTDLLVAAAKTGKIINI---KKGQFCASSVMV 147 (290)
Q Consensus 76 l~~-L~~~~~~~Gi~~~s~~~d~~~~~~l~~---~~d~~-kIgs~~~~n~~lL~~~a~~~~PVil---stG~~~tl~e~~ 147 (290)
+.| ++.+....++|+.-+-++++.++...+ ..+++ -|....-....++..+++.+.||++ +.|+..+.+|..
T Consensus 72 m~~li~~l~~~~d~PlsIDT~~~~v~eaaLk~~~G~~iINsis~e~~~~~~~~~l~~~yga~vI~l~~d~g~p~~~~er~ 151 (260)
T d3bofa1 72 VEKIVQTLPYVSNVPLSLDIQNVDLTERALRAYPGRSLFNSAKVDEEELEMKINLLKKYGGTLIVLLMGKDVPKSFEERK 151 (260)
T ss_dssp HHHHHHHHHHHTCSCEEEECCCHHHHHHHHHHCSSCCEEEEEESCHHHHHHHHHHHHHHCCEEEEESCSSSCCCSHHHHH
T ss_pred HHHHHHHHHhcCCCCccccCCCHHHHHHHHHHhcCcceEeecccccchHHHHHHHHHhcCCCEEEEecCCcccccHHHHH
Confidence 554 344457789999999999988877644 23332 1222211222356778899999876 346666777766
Q ss_pred HHHH----HHHHcC-CCcEEEEeecCCCCCCCCCCC---chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCC--
Q 022892 148 NSAE----KVRLAG-NPNVMVCERGTMFGYNDLIVD---PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG-- 217 (290)
Q Consensus 148 ~Ave----~i~~~G-n~~i~L~~~gs~~~y~~~~~d---L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g-- 217 (290)
..++ .+.+.| .++++ +..+.-+. ....-+ |++|..+++.++|+.+- . |+.|.|
T Consensus 152 ~~~~~~~~~~~~~g~~e~ii-~DPli~~~-~t~~~~~~~l~~i~~i~~~g~~~~~G--l-------------SN~SFGlp 214 (260)
T d3bofa1 152 EYFEKALKILERHDFSDRVI-FDPGVLPL-GAEGKPVEVLKTIEFISSKGFNTTVG--L-------------SNLSFGLP 214 (260)
T ss_dssp HHHHHHHHHHHHTTCGGGEE-EECCCCCG-GGTCCHHHHHHHHHHHHHTTCCBCCB--G-------------GGGGTTCT
T ss_pred HHHHHHHHHHHhcCCcHhhe-ecccceec-cchHHHHHHHHHHHHHHhcCcceeec--c-------------ccccCCCc
Confidence 5554 344455 34655 58887542 111123 45555555567776431 1 122223
Q ss_pred CcccHHHHH-HHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCcc
Q 022892 218 LRELIPCIA-RTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQ 279 (290)
Q Consensus 218 ~~~~~~~~a-~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~~ 279 (290)
.|..+...- ..|+..|.+.-++-.|- +++++.++..+..+|..+
T Consensus 215 ~R~~ln~~Fl~~a~~~Gld~aIvnp~~------------------~~~~~~i~a~~~ll~~de 259 (260)
T d3bofa1 215 DRSYYNTAFLVLGISKGLSSAIMNPLD------------------ETLMKTLNATLVILEKKE 259 (260)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEECTTC------------------HHHHHHHHHHHHHTTSSC
T ss_pred chHHHHHHHHHHHHHcCCCcccCCcCc------------------HHHHHHHHHHHHHhCCCC
Confidence 244444432 25788998876665431 678888888888777643
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=94.03 E-value=0.056 Score=45.00 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=63.3
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
+.++++++++|++-.. ++...+++.+ .+ .+|++-|++-...+.++..++.+.||+|++.+.++.|++|..+.++..+
T Consensus 70 ~~a~~~~~~~~i~~~~-~~~~~d~~ell~~~~iD~V~I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~ 148 (221)
T d1h6da1 70 EKAKIVAAEYGVDPRK-IYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAK 148 (221)
T ss_dssp HHHHHHHHHTTCCGGG-EECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccc-ccccCchhhhcccccceeeeeccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHH
Confidence 4456778889987422 1122334444 33 6999999999999999999999999999999999999999999999887
Q ss_pred HcC
Q 022892 155 LAG 157 (290)
Q Consensus 155 ~~G 157 (290)
+.|
T Consensus 149 ~~~ 151 (221)
T d1h6da1 149 AAN 151 (221)
T ss_dssp HHT
T ss_pred hcC
Confidence 764
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=93.78 E-value=0.092 Score=41.23 Aligned_cols=81 Identities=14% Similarity=0.019 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
...+++++++++...+-+ ++ .+++.+|++-|.+..-.+.++..++.+.|+||++.+.++.+++|...-++...+.|
T Consensus 38 ~~~~~~~~~~~~~~~~~~--~~--ll~~~iD~V~I~tp~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~ 113 (167)
T d1xeaa1 38 VLGTLATRYRVSATCTDY--RD--VLQYGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHH 113 (167)
T ss_dssp HHHHHHHHTTCCCCCSST--TG--GGGGCCSEEEECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccccH--HH--hcccccceecccccccccccccccccccccccccCCCCcCCHHHHHHHHHHHHHcC
Confidence 455667788886433222 22 23446899999999999999999999999999999999999999999999887764
Q ss_pred CCcEEE
Q 022892 158 NPNVMV 163 (290)
Q Consensus 158 n~~i~L 163 (290)
..+.+
T Consensus 114 -~~~~v 118 (167)
T d1xeaa1 114 -QPLYV 118 (167)
T ss_dssp -CCEEE
T ss_pred -CEEEE
Confidence 34443
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=93.76 E-value=0.13 Score=44.35 Aligned_cols=74 Identities=15% Similarity=0.050 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCH--------HHHHHHHhc--CCeEEEeCCCCCC
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQT--------DLLVAAAKT--GKIINIKKGQFCA 142 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~--------~lL~~~a~~--~~PVilstG~~~t 142 (290)
+.+..+.++|.++|+.++.|+|+.++++.+.+ .++++-|-.|++..+ .|.+.+... +..++-..|.. |
T Consensus 141 ~~l~~l~~~A~~lgl~~LVEvh~~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~~~~i~IsESGI~-~ 219 (254)
T d1vc4a_ 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYS-R 219 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCC-S
T ss_pred HHHHHHHHHHHHhCCceEEEeccHHHHhhhhcCCCCEEEEeccchhhhhcchHHHHHhhhcccccCCCCEEEEccCCC-C
Confidence 45777889999999999999999999999888 699999999887322 233334443 55777888888 8
Q ss_pred HHHHHH
Q 022892 143 SSVMVN 148 (290)
Q Consensus 143 l~e~~~ 148 (290)
.+++..
T Consensus 220 ~~dv~~ 225 (254)
T d1vc4a_ 220 KEELKA 225 (254)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 888754
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.8 Score=38.06 Aligned_cols=149 Identities=16% Similarity=0.122 Sum_probs=96.1
Q ss_pred hhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHH
Q 022892 4 STALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVK 83 (290)
Q Consensus 4 ~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~ 83 (290)
+++...-+ ...|+.-|.- +++.+..+++++.|++ .|+.++-.. ++. ...++.+++++
T Consensus 5 ~~~~~~~l-~~~~iipvlr---~~~~~~a~~~~~al~~----~Gi~~iEit------------l~t---p~a~~~I~~l~ 61 (213)
T d1wbha1 5 KTSAESIL-TTGPVVPVIV---VKKLEHAVPMAKALVA----GGVRVLNVT------------LRT---ECAVDAIRAIA 61 (213)
T ss_dssp SSCHHHHH-HSCSEEEEEC---CSSGGGHHHHHHHHHH----TTCCEEEEE------------SCS---TTHHHHHHHHH
T ss_pred ccCHHHHH-HhCCEEEEEE---CCCHHHHHHHHHHHHH----CCCCEEEEe------------CCC---hhHHHHHHHHH
Confidence 33333334 2345443333 3466778888888888 588876543 111 23566666666
Q ss_pred HhcC-CcEE-EeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCc
Q 022892 84 IAYD-IPIV-TDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 84 ~~~G-i~~~-s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~ 160 (290)
++++ +.+- -|+.+.++++.+.+ .++|+-=+. .|.++++++.+.+.|++ -|.+ |+.|+..|.+ .|-.-
T Consensus 62 ~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~---~~~~v~~~a~~~~i~~i--PGv~-TpsEi~~A~~----~G~~~ 131 (213)
T d1wbha1 62 KEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG---LTEPLLKAATEGTIPLI--PGIS-TVSELMLGMD----YGLKE 131 (213)
T ss_dssp HHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS---CCHHHHHHHHHSSSCEE--EEES-SHHHHHHHHH----TTCCE
T ss_pred HHCCCCeeeccccccHHHHHHHHHCCCcEEECCC---CCHHHHHHHHhcCCCcc--CCcC-CHHHHHHHHH----CCCCE
Confidence 6654 3333 39999999998877 688887666 67899999999998887 4666 9999999865 46543
Q ss_pred EEEEeecCCCCCCCCCCC-chhHHHHHh-c-CCCEE
Q 022892 161 VMVCERGTMFGYNDLIVD-PRNLEWMRE-A-NCPVV 193 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~d-L~~i~~lk~-~-~~pV~ 193 (290)
+=+ ||...+. ...+..++. | +++++
T Consensus 132 vKl--------FPA~~~Gg~~~lkal~~p~p~~~~~ 159 (213)
T d1wbha1 132 FKF--------FPAEANGGVKALQAIAGPFSQVRFC 159 (213)
T ss_dssp EEE--------TTTTTTTHHHHHHHHHTTCTTCEEE
T ss_pred EEe--------ccchhcChHHHHHHhcCcccCCcee
Confidence 333 5554443 345566665 3 45554
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=93.57 E-value=1.6 Score=35.94 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=101.6
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV 94 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~ 94 (290)
-++|+|.++.... ...++..++..+ .|+.+|-.- +| . ....+.. ...+..+.+++.|+++|++++-.
T Consensus 17 ~~ly~i~~~~~~~--~~~~~~v~~al~----~Gv~~iqlR--~K-~-~~~~~~~--~~~~~a~~l~~lc~~~~~~liIn- 83 (226)
T d2tpsa_ 17 LSVYFIMGSNNTK--ADPVTVVQKALK----GGATLYQFR--EK-G-GDALTGE--ARIKFAEKAQAACREAGVPFIVN- 83 (226)
T ss_dssp TTEEEEECGGGCS--SCHHHHHHHHHH----HTCSEEEEC--CC-S-TTCCCHH--HHHHHHHHHHHHHHHHTCCEEEE-
T ss_pred CCEEEEECccccc--cCHHHHHHHHHH----CCCCEEEEc--CC-C-ccchhHH--HHHHHHHHHHHHHHHhCCeEEEc-
Confidence 3589999877642 234566666555 599887221 11 0 0000000 01234567889999999998854
Q ss_pred cCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC---C
Q 022892 95 HETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM---F 170 (290)
Q Consensus 95 ~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~---~ 170 (290)
| .++...+ .+|-+-+|..+..-... +..-. .+-++.|.. +++|+..|.+ .|.+.+.+-..-.+ .
T Consensus 84 -d--~~~lA~~~~adGvHl~~~d~~~~~~-r~~~~-~~iig~S~h---~~~e~~~a~~----~g~DYi~~gpvf~T~sK~ 151 (226)
T d2tpsa_ 84 -D--DVELALNLKADGIHIGQEDANAKEV-RAAIG-DMILGVSAH---TMSEVKQAEE----DGADYVGLGPIYPTETKK 151 (226)
T ss_dssp -S--CHHHHHHHTCSEEEECTTSSCHHHH-HHHHT-TSEEEEEEC---SHHHHHHHHH----HTCSEEEECCSSCCCSSS
T ss_pred -C--CHHHHhhccCCEEEeccccchhhhh-hhccc-ceeeeeecc---chHHHHHHHh----CcCCeEEEeccccccccc
Confidence 2 4455555 59999999998765443 44333 345666654 8999988865 36666655443211 1
Q ss_pred CCCCCCCCchhHHHHHh--cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 171 GYNDLIVDPRNLEWMRE--ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 171 ~y~~~~~dL~~i~~lk~--~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
++.. ..-...+..+++ .++||+.- ||.. +.-...+..+||+|+.+=+-+
T Consensus 152 ~~~~-~~~~~~~~~~~~~~~~~Pv~Ai--------------------GGI~---~~ni~~l~~~Ga~giAvis~I 202 (226)
T d2tpsa_ 152 DTRA-VQGVSLIEAVRRQGISIPIVGI--------------------GGIT---IDNAAPVIQAGADGVSMISAI 202 (226)
T ss_dssp SCCC-CCTTHHHHHHHHTTCCCCEEEE--------------------SSCC---TTTSHHHHHTTCSEEEESHHH
T ss_pred cccc-ccccchhHHHHHhcCCCCEEEe--------------------cCCC---HHHHHHHHHhCCCEEEEhHHh
Confidence 1111 112344455543 57898651 1100 011234567899999887765
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=92.98 E-value=0.17 Score=40.30 Aligned_cols=75 Identities=15% Similarity=0.091 Sum_probs=61.1
Q ss_pred HHHHHHhcCCcEEEeecCcccHHH-Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEE-VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~-l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
..++++++|.+...+ +.+. +.+ .+|++-|.+-.-.+.+++.++.+.||+|++.+.++.+++|...-++..++.
T Consensus 43 ~~~~~~~~~~~~~~~-----~~~ell~~~~id~v~I~tp~~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~ 117 (181)
T d1zh8a1 43 AEEFAKMVGNPAVFD-----SYEELLESGLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKS 117 (181)
T ss_dssp HHHHHHHHSSCEEES-----CHHHHHHSSCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHC
T ss_pred hhhhhccccccceee-----eeeccccccccceeeccccccccccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHh
Confidence 456677888875432 3334 444 599999999999999999999999999999999999999999999988776
Q ss_pred CC
Q 022892 157 GN 158 (290)
Q Consensus 157 Gn 158 (290)
|.
T Consensus 118 ~~ 119 (181)
T d1zh8a1 118 EK 119 (181)
T ss_dssp SS
T ss_pred CC
Confidence 53
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.97 E-value=0.13 Score=40.93 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..+++++++|++..+.+++ +.+.+ .+ .+|++-|++..-.+.++...+.+.|+||++.+.++.+++|....++....
T Consensus 38 ~~~~~~~~~~~~~~~~~~~--~~~~ll~~~~iD~v~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~ 115 (184)
T d1ydwa1 38 KAKAFATANNYPESTKIHG--SYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEA 115 (184)
T ss_dssp HHHHHHHHTTCCTTCEEES--SHHHHHHCTTCCEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHT
T ss_pred ccccchhccccccceeecC--cHHHhhhccccceeeecccchhhcchhhhhhhccceeecccccccCHHHHHHHHHHHHh
Confidence 3456678899876555553 34444 34 69999999999999999999999999999999999999999999988765
Q ss_pred cC
Q 022892 156 AG 157 (290)
Q Consensus 156 ~G 157 (290)
.|
T Consensus 116 ~~ 117 (184)
T d1ydwa1 116 NG 117 (184)
T ss_dssp TT
T ss_pred hC
Confidence 43
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.91 E-value=1.2 Score=38.07 Aligned_cols=166 Identities=11% Similarity=0.097 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHhc--CCcEEEeec--Cccc----HHHHhh-hcceeccc-------------CCccCCHHHHHH----H
Q 022892 73 VEGLKILEKVKIAY--DIPIVTDVH--ETVQ----CEEVGK-VADIIQIP-------------AFLCRQTDLLVA----A 126 (290)
Q Consensus 73 ~~~l~~L~~~~~~~--Gi~~~s~~~--d~~~----~~~l~~-~~d~~kIg-------------s~~~~n~~lL~~----~ 126 (290)
+.+++.+.+....+ +..+++... ++++ +..+.+ .+|++.+- .....+.++++. +
T Consensus 87 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v 166 (312)
T d1gtea2 87 AYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWV 166 (312)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHH
Confidence 45677777777665 333333332 2221 222333 47877662 112245555544 3
Q ss_pred -HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC---CCC----------------------CCCCch
Q 022892 127 -AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG---YND----------------------LIVDPR 180 (290)
Q Consensus 127 -a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~---y~~----------------------~~~dL~ 180 (290)
..+.+||++|-+.. .++....++.+...|-+-++++.+..... ... ..+.++
T Consensus 167 ~~~~~~pv~vKl~~~--~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~ 244 (312)
T d1gtea2 167 RQAVQIPFFAKLTPN--VTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALR 244 (312)
T ss_dssp HHHCSSCEEEEECSC--SSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHH
T ss_pred hhccCCceeeccccc--chhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHH
Confidence 23689999996654 12333444555666776677665432100 000 011255
Q ss_pred hHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCCh
Q 022892 181 NLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPL 258 (290)
Q Consensus 181 ~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p 258 (290)
.+..+++ . ++||+.. +|.+. ..-+...+++||+++.|=+-+.- + .|
T Consensus 245 ~v~~~~~~~~~ipIi~~--------------------GGI~~--~~d~~~~l~aGA~~Vqv~ta~~~-----~-----G~ 292 (312)
T d1gtea2 245 AVTTIARALPGFPILAT--------------------GGIDS--AESGLQFLHSGASVLQVCSAVQN-----Q-----DF 292 (312)
T ss_dssp HHHHHHHHSTTCCEEEE--------------------SSCCS--HHHHHHHHHTTCSEEEESHHHHT-----S-----CT
T ss_pred HHHHHHHHcCCCcEEEE--------------------cCCCC--HHHHHHHHHcCCCeeEECHhhhc-----c-----Ch
Confidence 6666766 4 6898762 12111 22344567899998877543211 1 36
Q ss_pred HHHHHHHHHHHHHH
Q 022892 259 RNLEELLEELVAIA 272 (290)
Q Consensus 259 ~~l~~lv~~ir~~~ 272 (290)
.-++++++.+++.=
T Consensus 293 ~~i~~i~~~L~~~m 306 (312)
T d1gtea2 293 TVIQDYCTGLKALL 306 (312)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67888888887753
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=92.78 E-value=1.6 Score=36.08 Aligned_cols=148 Identities=13% Similarity=0.173 Sum_probs=95.4
Q ss_pred hhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH
Q 022892 5 TALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI 84 (290)
Q Consensus 5 ~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~ 84 (290)
+.+++.+.. .+++-|.- .+|.+...++++.|++ .|+.++-.. ++. +..++.++++.+
T Consensus 5 ~~~~~~l~~-~~iipvlr---~~~~~~~~~~~~al~~----~Gi~~iEit------------l~~---~~a~~~I~~l~~ 61 (212)
T d1vhca_ 5 QQIIEKLRE-LKIVPVIA---LDNADDILPLADTLAK----NGLSVAEIT------------FRS---EAAADAIRLLRA 61 (212)
T ss_dssp HHHHHHHHH-HCEEEEEC---CSSGGGHHHHHHHHHH----TTCCEEEEE------------TTS---TTHHHHHHHHHH
T ss_pred HHHHHHHHH-CCEEEEEe---CCCHHHHHHHHHHHHH----CCCCEEEEe------------CCC---hhHHHHHHHHHh
Confidence 445566643 33333322 2355677888888877 588876542 111 245666666666
Q ss_pred hc-CCcEEE-eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 85 AY-DIPIVT-DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 85 ~~-Gi~~~s-~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
++ ++.+-. |+.+.++++.+.+ .++|+-=+. .|.++++.+-+.+.|++ -|.+ |+.|+..|.+ .|-+-+
T Consensus 62 ~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~---~~~~v~~~a~~~~i~~i--PGv~-TpsEi~~A~~----~G~~~v 131 (212)
T d1vhca_ 62 NRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPG---LNPKIVKLCQDLNFPIT--PGVN-NPMAIEIALE----MGISAV 131 (212)
T ss_dssp HCTTCEEEEESCCSHHHHHHHHHHTCSEEECSS---CCHHHHHHHHHTTCCEE--CEEC-SHHHHHHHHH----TTCCEE
T ss_pred cCCCceEeeeecccHHHHHHHHhhCCcEEECCC---CCHHHHHHHHhcCCCcc--CCcC-CHHHHHHHHH----CCCCEE
Confidence 66 555544 9999999999887 688887765 67799999999998887 4666 9999999865 465433
Q ss_pred EEEeecCCCCCCCCCC-CchhHHHHHh-c-CCCEE
Q 022892 162 MVCERGTMFGYNDLIV-DPRNLEWMRE-A-NCPVV 193 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~-dL~~i~~lk~-~-~~pV~ 193 (290)
=+ ||...+ -++-+..|+. + +++++
T Consensus 132 K~--------FPA~~~gG~~~lkal~~p~p~~~~~ 158 (212)
T d1vhca_ 132 KF--------FPAEASGGVKMIKALLGPYAQLQIM 158 (212)
T ss_dssp EE--------TTTTTTTHHHHHHHHHTTTTTCEEE
T ss_pred EE--------ccccccchHHHHHHHhccccCCeEE
Confidence 33 454323 2445555555 4 56664
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=92.67 E-value=0.75 Score=38.57 Aligned_cols=188 Identities=19% Similarity=0.255 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD--VHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d 108 (290)
-+++|+.+.+ .|++-+.-.-.+.+ .. +-..-+..+.+.+++.++|+..- +.+.++++.+-+ .++
T Consensus 32 P~~~a~~~~~----~g~dei~ivDld~~-------~~--~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~ 98 (253)
T d1thfd_ 32 PVELGKFYSE----IGIDELVFLDITAS-------VE--KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGAD 98 (253)
T ss_dssp HHHHHHHHHH----TTCCEEEEEESSCS-------SS--HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCS
T ss_pred HHHHHHHHHH----cCCCEEEEEeeccc-------cc--CcccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCC
Confidence 5788888877 59887665444420 11 11345778899999999998774 888888888766 699
Q ss_pred eecccCCccCCHHHHHHHHhc-CC-eEEEe------CC---------C---CCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT-GK-IINIK------KG---------Q---FCASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~-~~-PVils------tG---------~---~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
-+-||+...+|.++++++++. |. -|+++ .+ . ..++.|+. +.+...|-..+++ ....
T Consensus 99 kviigs~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~eii~-tdI~ 174 (253)
T d1thfd_ 99 KVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWV---VEVEKRGAGEILL-TSID 174 (253)
T ss_dssp EEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHH---HHHHHTTCSEEEE-EETT
T ss_pred EEEEChHHhhChHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHH---HHHHhccCCEEEE-EEec
Confidence 999999999999999888643 32 12221 11 1 11344444 4556666655544 4444
Q ss_pred CCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 169 MFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 169 ~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
+-+. ..-.|+..+..+++ .++||++- +|.+.. ..+.. +...|++|+++=+-|
T Consensus 175 ~dGt-~~G~d~~ll~~i~~~~~~pvi~~--------------------GGv~s~-~di~~-l~~~g~~gvivgsal---- 227 (253)
T d1thfd_ 175 RDGT-KSGYDTEMIRFVRPLTTLPIIAS--------------------GGAGKM-EHFLE-AFLAGADAALAASVF---- 227 (253)
T ss_dssp TTTS-CSCCCHHHHHHHGGGCCSCEEEE--------------------SCCCSH-HHHHH-HHHTTCSEEEESHHH----
T ss_pred ccCc-cCCccccccccccccccceEEEe--------------------cCCCCH-HHHHH-HHHCCCCEEEEchHH----
Confidence 3221 12257778888877 78999871 121111 23343 356799999998877
Q ss_pred CCCCCCCCCChHHHHHHHHH
Q 022892 248 APVDGPTQWPLRNLEELLEE 267 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ 267 (290)
|...++++++++.+..
T Consensus 228 ----~~~~~~~~~~k~~l~~ 243 (253)
T d1thfd_ 228 ----HFREIDVRELKEYLKK 243 (253)
T ss_dssp ----HTTCSCHHHHHHHHHH
T ss_pred ----HcCCCCHHHHHHHHHH
Confidence 5567788888877653
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.66 E-value=0.76 Score=38.64 Aligned_cols=188 Identities=18% Similarity=0.196 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
-+++|+.+.+ .|++.+.-.-..++ . .+-..-+..+++.+++..+|+.. =+.+.++++.+-+ .++
T Consensus 34 P~~~a~~~~~----~gadei~ivDl~~~-------~--~~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~ 100 (252)
T d1h5ya_ 34 PVEMAVRYEE----EGADEIAILDITAA-------P--EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGAD 100 (252)
T ss_dssp HHHHHHHHHH----TTCSCEEEEECCCC-------T--TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCS
T ss_pred HHHHHHHHHH----CCCCEEEEEecccc-------c--cccccHHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCc
Confidence 4677888876 59887655444421 0 01134567788999999999865 4778888888766 799
Q ss_pred eecccCCccCCHHHHHHHHhc-CC-eEEEeC--------------C-C---CCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT-GK-IINIKK--------------G-Q---FCASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~-~~-PVilst--------------G-~---~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
-+-|+|....|..+++++++. |. -|+++- | . ..++.||.+ .+...|-..+++. ...
T Consensus 101 kVii~s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~g~~eii~t-dI~ 176 (252)
T d1h5ya_ 101 KVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAK---EVEELGAGEILLT-SID 176 (252)
T ss_dssp EEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHH---HHHHHTCSEEEEE-ETT
T ss_pred EEEecccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHH---HHHhcCCCEEEEE-eec
Confidence 999999999999999887642 32 122211 1 1 125666665 3445565565554 333
Q ss_pred CCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 169 MFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 169 ~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
.-+. ..-.|+..+..+++ +++||++- +|.+.. ..+. .+...|++|+++=+-|
T Consensus 177 ~dG~-~~G~d~~~~~~i~~~~~~pii~~--------------------GGv~~~-~di~-~l~~~g~~gv~~gs~l---- 229 (252)
T d1h5ya_ 177 RDGT-GLGYDVELIRRVADSVRIPVIAS--------------------GGAGRV-EHFY-EAAAAGADAVLAASLF---- 229 (252)
T ss_dssp TTTT-CSCCCHHHHHHHHHHCSSCEEEE--------------------SCCCSH-HHHH-HHHHTTCSEEEESHHH----
T ss_pred ccCc-cCCcCHHHHHHHHHhcCCCEEEe--------------------cCCCCH-HHHH-HHHHCCCCEEEEhhHH----
Confidence 2111 11246778888887 88999881 121111 2333 3456899999998755
Q ss_pred CCCCCCCCCChHHHHHHHHH
Q 022892 248 APVDGPTQWPLRNLEELLEE 267 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ 267 (290)
|...+++++++++++.
T Consensus 230 ----~~~~~~~~~lk~~l~~ 245 (252)
T d1h5ya_ 230 ----HFRVLSIAQVKRYLKE 245 (252)
T ss_dssp ----HTTSSCHHHHHHHHHH
T ss_pred ----HcCCCCHHHHHHHHHH
Confidence 4456788888887653
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=92.54 E-value=0.21 Score=42.83 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHh-h-hcceecccCCccCC----HH-HHHHHHh--cCCeEEEeCCCCCCH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVG-K-VADIIQIPAFLCRQ----TD-LLVAAAK--TGKIINIKKGQFCAS 143 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~-~-~~d~~kIgs~~~~n----~~-lL~~~a~--~~~PVilstG~~~tl 143 (290)
.+.++.|.++|.++|+.++.|+||++.++.+. . ..+++-|-.|++.. .. ..+.+.. .+.+++-..|.. +.
T Consensus 136 ~~~l~~l~~~a~~lgle~LvEvh~~~El~~al~~~~a~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IaESGI~-~~ 214 (251)
T d1i4na_ 136 AEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIK-DP 214 (251)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCC-CG
T ss_pred HHHHHHHHHHHHHhCCeeecccCCHHHHHHHhcccccceeeeeecchhccchhhhHHHHHHhhCCCCCEEEEcCCCC-CH
Confidence 47799999999999999999999999999865 3 48899999988833 11 1122222 366788888888 88
Q ss_pred HHHHH
Q 022892 144 SVMVN 148 (290)
Q Consensus 144 ~e~~~ 148 (290)
+++..
T Consensus 215 ~d~~~ 219 (251)
T d1i4na_ 215 RELKD 219 (251)
T ss_dssp GGHHH
T ss_pred HHHHH
Confidence 87653
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=92.20 E-value=3 Score=35.44 Aligned_cols=205 Identities=15% Similarity=0.148 Sum_probs=112.4
Q ss_pred CCchhhHHhhhcCCCCe----EEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCccc----------
Q 022892 1 MDPSTALFNQLKAAEPF----FLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKS---------- 66 (290)
Q Consensus 1 ~~~~~~~~~~i~~~~~~----~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~---------- 66 (290)
|+--..+|..+...++. |+.||=- |.+..++.++.|.+ .|+|++-.+. |.+.|..
T Consensus 1 M~ri~~~f~~lk~~~~~ali~y~t~G~P---~~~~~~~~~~~l~~----~GaDiiElGi----PfSDP~aDGpvIq~a~~ 69 (267)
T d1qopa_ 1 MERYENLFAQLNDRREGAFVPFVTLGDP---GIEQSLKIIDTLID----AGADALELGV----PFSDPLADGPTIQNANL 69 (267)
T ss_dssp CCHHHHHHHHHHHTTCCEEEEEEETTSS---CHHHHHHHHHHHHH----TTCSSEEEEC----CCSCCTTCCHHHHHHHH
T ss_pred CchHHHHHHHHHHcCCceEEEEEeCcCC---CHHHHHHHHHHHHH----cCCCEEEECC----CCCcccccchHHHhhhh
Confidence 44456788888765543 3444422 55666666666665 6999987764 3333321
Q ss_pred ---CCCCChhHHHHHHHHHHHhc-CCcEEE-e----ecCcccHHHHh---h-hcceecccCCcc-CCHHHHHHHHhcCC-
Q 022892 67 ---FRGPGMVEGLKILEKVKIAY-DIPIVT-D----VHETVQCEEVG---K-VADIIQIPAFLC-RQTDLLVAAAKTGK- 131 (290)
Q Consensus 67 ---~~g~~~~~~l~~L~~~~~~~-Gi~~~s-~----~~d~~~~~~l~---~-~~d~~kIgs~~~-~n~~lL~~~a~~~~- 131 (290)
-.|..+.+-++++++++++. .+|++- + ++..-.-+|+. + .++-+-|+---. ...++.+.+.+.+.
T Consensus 70 ~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~ 149 (267)
T d1qopa_ 70 RAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIA 149 (267)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCE
T ss_pred hcccccchhhhhhhhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCce
Confidence 02333456677888888774 567654 2 23332222333 3 466666665433 45667666777787
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC-CCCCc-hhHHHHHh-cCCCEEEeCCCCCCCCCCCcc
Q 022892 132 IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND-LIVDP-RNLEWMRE-ANCPVVADVTHSLQQPAGKKL 208 (290)
Q Consensus 132 PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~-~~~dL-~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~ 208 (290)
+|.|=+.++ +.+-+...++ ..+.-|-++-..+-.+-.. ...++ ..+..+|+ +++||.+- -++
T Consensus 150 ~I~lvaPtt-~~~Ri~~i~~----~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vG--FGI-------- 214 (267)
T d1qopa_ 150 PIFICPPNA-DDDLLRQVAS----YGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQG--FGI-------- 214 (267)
T ss_dssp EECEECTTC-CHHHHHHHHH----HCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEE--SSC--------
T ss_pred EEEEecccc-cHHHHHHHHh----hCchhhhhhcccccCCcccccchhHHHHHHHHhhhccCCceee--ccc--------
Confidence 666666666 6666665544 2232332222211111111 11122 45777888 89997551 111
Q ss_pred CCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 209 DGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 209 ~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.. ++-+..++..||||+|+=+++
T Consensus 215 -------~~-----~e~v~~~~~~~ADGvIVGSAi 237 (267)
T d1qopa_ 215 -------SS-----PEQVSAAVRAGAAGAISGSAI 237 (267)
T ss_dssp -------CS-----HHHHHHHHHTTCSEEEECHHH
T ss_pred -------CC-----HHHHHHHHhcCCCEEEECHHH
Confidence 12 444445678899999998776
|
| >d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class-II DAHP synthetase domain: Probable DAHP synthetase AroG, phenylalanine-repressible species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.99 E-value=0.24 Score=45.73 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=62.6
Q ss_pred cceecccCCccC-CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEeecCCCCCCCCCCC--c-hh
Q 022892 107 ADIIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN-PNVMVCERGTMFGYNDLIVD--P-RN 181 (290)
Q Consensus 107 ~d~~kIgs~~~~-n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn-~~i~L~~~gs~~~y~~~~~d--L-~~ 181 (290)
..+++||-|+-+ +-..++.+.+..=||.+|-|..++++|+..-++++--... .+|.|+.|=. ...+. | .-
T Consensus 276 aH~lWIGeRTRqlDgAHVef~rgI~NPIGiKvGP~~~pd~l~~L~~~LNP~nepGRltLI~RmG-----a~ki~~~LP~L 350 (462)
T d2b7oa1 276 AHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMG-----NHKVRDLLPPI 350 (462)
T ss_dssp CSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEECCC-----TTTHHHHHHHH
T ss_pred cceeeecccccccccchhHHHHhccCcceeeeCCCCCHHHHHHHHHHhCcccccceEEEEehhc-----hHHHHHHHHHH
Confidence 557899988764 4455677888888999999999999999999997732211 2699999833 22232 1 22
Q ss_pred HHHHHhcCCCEEE--eCCCCC
Q 022892 182 LEWMREANCPVVA--DVTHSL 200 (290)
Q Consensus 182 i~~lk~~~~pV~~--D~sHs~ 200 (290)
|...++.|.||++ |+=|+|
T Consensus 351 I~aV~~~g~~VvW~cDPMHGN 371 (462)
T d2b7oa1 351 VEKVQATGHQVIWQCDPMHGN 371 (462)
T ss_dssp HHHHHTTTCCCEEEECCSTTS
T ss_pred HHHHHhcCCceEEEecCCcCC
Confidence 3334457889877 666986
|
| >d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=91.98 E-value=0.31 Score=42.65 Aligned_cols=95 Identities=18% Similarity=0.165 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh-----cceecccCCcc-CCHHHHHHHHhc--CCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-----ADIIQIPAFLC-RQTDLLVAAAKT--GKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~-----~d~~kIgs~~~-~n~~lL~~~a~~--~~PVilstG~~~tl~ 144 (290)
++-..++.++++++-|..+-+||++++.+-.... -.+.-||.... +|..+|+..-.. ---|+||-++-+|+.
T Consensus 131 ~eli~~y~~l~~~yPIisIEDP~~edD~~gw~~lt~~~g~~~~ivGDDL~~Tn~~rl~~gi~~~~~nailiK~NQiGTvT 210 (292)
T d2fyma1 131 EEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLT 210 (292)
T ss_dssp HHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECGGGTCSHH
T ss_pred HHHHHHHHHHHhcCceEEEeCCcccccHHHHHHHHHhcCCcEEEeCCchhccChHHHHhhhhcCCccceeechhhhhHHH
Confidence 4556789999999999999999999997765442 23555665543 899999876543 337999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecC
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
|..+|++..+..| -.+++-||..
T Consensus 211 et~ea~~la~~~g-~~~ivShRSG 233 (292)
T d2fyma1 211 ETLAAIKMAKDAG-YTAVISHRSG 233 (292)
T ss_dssp HHHHHHHHHHHTT-CEEEEECCSS
T ss_pred HHHHHHHHHHHcC-CeEeecCCCC
Confidence 9999999988764 4788888864
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=91.85 E-value=0.91 Score=38.70 Aligned_cols=232 Identities=14% Similarity=0.108 Sum_probs=121.3
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCC---cc------------cCCCCChhH
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTS---SK------------SFRGPGMVE 74 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts---~~------------~~~g~~~~~ 74 (290)
.+...+|+.+=|||..- ..+..+++.+ +|+.+|.-.+...+||.. |. .|...|++.
T Consensus 8 Gl~l~nPi~~aag~~~~-----~~~~~~~~~~----~G~G~vv~ktit~~~~~gn~~pr~~~~~~~~~n~~G~~n~g~~~ 78 (311)
T d1juba_ 8 NAKFANPFMNASGVHCM-----TIEDLEELKA----SQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDY 78 (311)
T ss_dssp TEEESSSEEECTTSSCS-----SHHHHHHHHH----SSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHH
T ss_pred CEecCCCCEECCCCCCC-----CHHHHHHHHH----CCCcEEEEEEEeeccccCCCCCeEEEccccchhhhhhcCchhHH
Confidence 45566775555577531 2455555544 576665444443334431 11 123344455
Q ss_pred HHHHHHHHHHhc--CCcEEEeecCcccHHHHh------h--hcceec--ccCCcc-------CCHH----HHHHH-HhcC
Q 022892 75 GLKILEKVKIAY--DIPIVTDVHETVQCEEVG------K--VADIIQ--IPAFLC-------RQTD----LLVAA-AKTG 130 (290)
Q Consensus 75 ~l~~L~~~~~~~--Gi~~~s~~~d~~~~~~l~------~--~~d~~k--Igs~~~-------~n~~----lL~~~-a~~~ 130 (290)
.++.+.+..++. ..|++.++.....-++.. + +.|++- +.+-+. .+.. +++++ ....
T Consensus 79 ~~~~~~~~~~~~~~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (311)
T d1juba_ 79 YLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFT 158 (311)
T ss_dssp HHHHHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhhhhcccCCCceeeccccccchhHHHHHHHhhccccceeeeccccccccccccccccHHHHHHHHHHhhcccc
Confidence 666666666543 567888777655444322 1 234432 222111 2333 34444 2468
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC------------------C-CCCC---CCCCchhHHHHHh-
Q 022892 131 KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM------------------F-GYND---LIVDPRNLEWMRE- 187 (290)
Q Consensus 131 ~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~------------------~-~y~~---~~~dL~~i~~lk~- 187 (290)
+||++|-....+..++..+++.+...|-.-+...-.... + ++.- ....++.+..+++
T Consensus 159 ~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~ 238 (311)
T d1juba_ 159 KPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTR 238 (311)
T ss_dssp SCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTT
T ss_pred cceeecccccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHHHHh
Confidence 899999998878888888888877665443332211000 0 0000 0113444555554
Q ss_pred c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHH
Q 022892 188 A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELL 265 (290)
Q Consensus 188 ~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv 265 (290)
. ++||+.. +|.+. ..-+...+.+||+.+-|=+-+.. + -|+-++++.
T Consensus 239 ~~~~~~Iig~--------------------GGI~s--~~Da~~~i~aGA~~Vql~tal~~-----~-----Gp~~i~~i~ 286 (311)
T d1juba_ 239 LKPEIQIIGT--------------------GGIET--GQDAFEHLLCGATMLQIGTALHK-----E-----GPAIFDRII 286 (311)
T ss_dssp SCTTSEEEEE--------------------SSCCS--HHHHHHHHHHTCSEEEECHHHHH-----H-----CTHHHHHHH
T ss_pred cCCCeeEEec--------------------CCcCC--HHHHHHHHHcCCCceeeeHhhHh-----c-----ChHHHHHHH
Confidence 3 4787651 12111 12344568899995555332200 1 366788888
Q ss_pred HHHHHHHHHhCCccccc
Q 022892 266 EELVAIAKVSKGKQRMN 282 (290)
Q Consensus 266 ~~ir~~~~~lg~~~~~~ 282 (290)
+.+++.=...|-+.+-+
T Consensus 287 ~~L~~~m~~~G~~si~e 303 (311)
T d1juba_ 287 KELEEIMNQKGYQSIAD 303 (311)
T ss_dssp HHHHHHHHHHTCCSGGG
T ss_pred HHHHHHHHHcCCCCHHH
Confidence 88888776667665544
|
| >d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.80 E-value=0.29 Score=42.87 Aligned_cols=94 Identities=18% Similarity=0.149 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhh---hcceecccCC-ccCCHHHHHHHHhcC--CeEEEeCCCCCCHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGK---VADIIQIPAF-LCRQTDLLVAAAKTG--KIINIKKGQFCASSVMV 147 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~---~~d~~kIgs~-~~~n~~lL~~~a~~~--~PVilstG~~~tl~e~~ 147 (290)
+-..++.++++++-|..+=+||++++.+-... ......||.. .++|..+|+..-..+ --|+||-++-+|+.|..
T Consensus 136 elid~y~~li~~YPIisIEDp~~e~D~~gw~~lt~~~g~~iVGDDl~~Tn~~rl~~~i~~~~~nailiK~NQiGTvtEt~ 215 (295)
T d2al1a1 136 QLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKTAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESI 215 (295)
T ss_dssp HHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHTTCCSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHH
T ss_pred HHHHHHHHHHHhCCEEEecCCcCccchHHHHHHhhccCceeecchhhcccchhhhcchhhhcccceeecccchhhHHHHH
Confidence 55678999999999999999999999986554 2444455544 338999998865443 37999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEeecC
Q 022892 148 NSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 148 ~Ave~i~~~Gn~~i~L~~~gs 168 (290)
+|++..+..| -.+++-||..
T Consensus 216 ea~~la~~~g-~~~ivShRSG 235 (295)
T d2al1a1 216 KAAQDSFAAG-WGVMVSHRSG 235 (295)
T ss_dssp HHHHHHHHTT-CEEEEECCSB
T ss_pred HHHHHHHhcC-CeeecccCCC
Confidence 9999888765 4788888865
|
| >d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=91.79 E-value=0.29 Score=42.82 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh---cceecccCC-ccCCHHHHHHHHhcC--CeEEEeCCCCCCHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV---ADIIQIPAF-LCRQTDLLVAAAKTG--KIINIKKGQFCASSVMV 147 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~---~d~~kIgs~-~~~n~~lL~~~a~~~--~PVilstG~~~tl~e~~ 147 (290)
+-..++.++++++-|..+-+||++++.+-..+. +...-||-. .++|..+|+..-..+ --|+||-++-+|+.|..
T Consensus 135 elid~y~~l~~kYPIisIEDP~~E~D~~gw~~lt~~lg~~ivGDDl~vTn~~rl~kgi~~~aanailIK~NQiGTltEt~ 214 (294)
T d2akza1 135 QLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAI 214 (294)
T ss_dssp HHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHTCSSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHH
T ss_pred HHHHHHHHHhcccCeEEEeCCCcccchhhHHHHHHhcCcEEEccccccccHHHHHHHHhcCcCccceeccccchhHHHHH
Confidence 446688999999999999999999998876653 443445533 348999998865443 37999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEeecC
Q 022892 148 NSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 148 ~Ave~i~~~Gn~~i~L~~~gs 168 (290)
++++..++.| -.+++.||..
T Consensus 215 ea~~la~~~g-~~~ivShRsG 234 (294)
T d2akza1 215 QACKLAQENG-WGVMVSHRSG 234 (294)
T ss_dssp HHHHHHHHTT-CEEEEECCSB
T ss_pred HHHHHHHHcC-CcEEeeCCCC
Confidence 9999888765 4688888865
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=91.76 E-value=0.24 Score=41.22 Aligned_cols=84 Identities=5% Similarity=-0.051 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhc------CCeEEEeCCCCCCHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKT------GKIINIKKGQFCASSVMVNSA 150 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~------~~PVilstG~~~tl~e~~~Av 150 (290)
..++.++++|++.....-|.++ .+.+ .+|++-|..-.-.+.+...++-+. +|||++.+..+.+++|....+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~--l~~~~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~ 135 (237)
T d2nvwa1 58 SSLQTIEQLQLKHATGFDSLES--FAQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELY 135 (237)
T ss_dssp HHHHHHHHTTCTTCEEESCHHH--HHHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHH
T ss_pred HHHHHHHhcccccceeecchhh--cccccccceeeccCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHH
Confidence 4556678888886655444432 2333 699999999988888877776554 479999999999999999998
Q ss_pred HHHHHcCCCcEEE
Q 022892 151 EKVRLAGNPNVMV 163 (290)
Q Consensus 151 e~i~~~Gn~~i~L 163 (290)
+..++.++-.+.+
T Consensus 136 ~~a~~~~~~~~~v 148 (237)
T d2nvwa1 136 SISQQRANLQTII 148 (237)
T ss_dssp HHHHTCTTCEEEE
T ss_pred HHHhhcCCeeEEE
Confidence 8777665544433
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.69 E-value=1.7 Score=35.55 Aligned_cols=160 Identities=14% Similarity=0.142 Sum_probs=89.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
..+.++++||..+ |--.++-||.....+.|-. |...+.+ .|+ ..+.++|+.|++.+|++|.+.
T Consensus 5 ~~~vi~lvGptGv----GKTTTiaKLA~~~~~~g~k-V~lit~D--------t~R----~gA~eQL~~~a~~l~i~~~~~ 67 (207)
T d1okkd2 5 KGRVVLVVGVNGV----GKTTTIAKLGRYYQNLGKK-VMFCAGD--------TFR----AAGGTQLSEWGKRLSIPVIQG 67 (207)
T ss_dssp SSSEEEEECSTTS----SHHHHHHHHHHHHHTTTCC-EEEECCC--------CSS----TTHHHHHHHHHHHHTCCEECC
T ss_pred CCEEEEEECCCCC----CHHHHHHHHHHHHHHCCCc-EEEEEec--------ccc----ccchhhHhhcccccCceEEec
Confidence 3456677888874 2223333333333345644 2233333 143 357899999999999999875
Q ss_pred ecCcccHHHHh--------hhcceecc--cCCccCCHHHHHHHHhc---------CC---eEEEeCCCCCCHHHHHHHHH
Q 022892 94 VHETVQCEEVG--------KVADIIQI--PAFLCRQTDLLVAAAKT---------GK---IINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 94 ~~d~~~~~~l~--------~~~d~~kI--gs~~~~n~~lL~~~a~~---------~~---PVilstG~~~tl~e~~~Ave 151 (290)
....+....+. +..|++-| +.+.-.+..+++++.+. .. .+++=.++. ..+++..+..
T Consensus 68 ~~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~-~~~~~~~~~~ 146 (207)
T d1okkd2 68 PEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT-GQNGLEQAKK 146 (207)
T ss_dssp CTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB-CTHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeeccc-CchHHHHHHH
Confidence 54333222221 13455554 55555666655544332 12 233333444 5788888888
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCCCchh-HHHHHhcCCCEEEeCCCC
Q 022892 152 KVRLAGNPNVMVCERGTMFGYNDLIVDPRN-LEWMREANCPVVADVTHS 199 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~-i~~lk~~~~pV~~D~sHs 199 (290)
.....|-..+++..--.. ..+.+ +..+.++++||.| .+.+
T Consensus 147 ~~~~~~~~~lI~TKlDet-------~~~G~~l~~~~~~~~Pi~~-i~~G 187 (207)
T d1okkd2 147 FHEAVGLTGVIVTKLDGT-------AKGGVLIPIVRTLKVPIKF-VGVG 187 (207)
T ss_dssp HHHHHCCSEEEEECTTSS-------CCCTTHHHHHHHHCCCEEE-EECS
T ss_pred hhhccCCceEEEeccCCC-------CCccHHHHHHHHHCCCEEE-EeCC
Confidence 887777777888765432 12233 3334448999988 4444
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=91.49 E-value=1 Score=39.67 Aligned_cols=134 Identities=17% Similarity=0.137 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcCCcEEEee----cCcccHHHHhh-hcceecccCCccCCH---HHHHHHHh--cCCeEEEeCCCCCCH
Q 022892 74 EGLKILEKVKIAYDIPIVTDV----HETVQCEEVGK-VADIIQIPAFLCRQT---DLLVAAAK--TGKIINIKKGQFCAS 143 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~----~d~~~~~~l~~-~~d~~kIgs~~~~n~---~lL~~~a~--~~~PVilstG~~~tl 143 (290)
+..+..++. ++..+.+...+ .+.+.++.+.+ .+|++-|-...-.+. ++++.+-. .+.||+.-+-.. .
T Consensus 74 ~~~~~i~~v-k~~~~~v~~~vgv~~~~~e~~~~li~agvd~ivId~A~G~~~~~~~~ik~ik~~~~~~~viaGnV~t--~ 150 (330)
T d1vrda1 74 EQARQVSIV-KKTRLLVGAAVGTSPETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVAT--P 150 (330)
T ss_dssp HHHHHHHHH-HTCCBCCEEEECSSTTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECS--H
T ss_pred hhHHHHHHH-hhhccEEEEEEecCHHHHHHHHHHHHCCCCEEEEecCCCCchhHHHHHHHHHHhCCCCCEEeechhH--H
Confidence 333334433 44444443333 33333444444 588877654444443 33443322 367888876644 4
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeec------CC----CCCCCCCCCchhHHHH---Hh-cCCCEEEeCCCCCCCCCCCccC
Q 022892 144 SVMVNSAEKVRLAGNPNVMVCERG------TM----FGYNDLIVDPRNLEWM---RE-ANCPVVADVTHSLQQPAGKKLD 209 (290)
Q Consensus 144 ~e~~~Ave~i~~~Gn~~i~L~~~g------s~----~~y~~~~~dL~~i~~l---k~-~~~pV~~D~sHs~~~~~~~~~~ 209 (290)
+- ++.+...|- +.+.+-.| +. .++| ++.++... .+ .++||+.|.--..
T Consensus 151 ~~----a~~l~~~Ga-D~v~VGig~Gs~ctt~~~~G~g~p----~~sai~~~~~~~~~~~vpvIAdGGi~~--------- 212 (330)
T d1vrda1 151 EG----TEALIKAGA-DAVKVGVGPGSICTTRVVAGVGVP----QLTAVMECSEVARKYDVPIIADGGIRY--------- 212 (330)
T ss_dssp HH----HHHHHHTTC-SEEEECSSCSTTCHHHHHHCCCCC----HHHHHHHHHHHHHTTTCCEEEESCCCS---------
T ss_pred HH----HHHHHHcCC-CEEeeccccCccccccceeccccc----cchhHHHHHHHHHhcCceEEecCCccc---------
Confidence 33 344555675 45555322 21 2343 33444433 23 6789998755442
Q ss_pred CCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 210 GGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 210 ~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
+ -.++ .|.++||||+|+=+
T Consensus 213 -------~-----gdia-kAla~GAd~Vm~Gs 231 (330)
T d1vrda1 213 -------S-----GDIV-KALAAGAESVMVGS 231 (330)
T ss_dssp -------H-----HHHH-HHHHTTCSEEEESH
T ss_pred -------C-----Cchh-eeeeccCceeeecc
Confidence 1 2344 57999999999865
|
| >d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.34 E-value=0.18 Score=44.37 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh-----cceecccCCcc-CCHHHHHHHHhc--CCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-----ADIIQIPAFLC-RQTDLLVAAAKT--GKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~-----~d~~kIgs~~~-~n~~lL~~~a~~--~~PVilstG~~~tl~ 144 (290)
++.+..+.++++++-|..+=+||++++.+-.... -.+.-||.... ||..+|+..-.. ---|+||-++-+|+.
T Consensus 135 ~elid~y~~l~~~YPIisIEDP~~e~D~~gw~~lt~~lg~~~~iVGDDL~vTn~~~l~~gI~~~~~nailiK~NQiGTvt 214 (296)
T d1w6ta1 135 AEQIDYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLT 214 (296)
T ss_dssp HHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHH
T ss_pred HHHHHHHHHHHhcCCeEEEecCcccccHHHHHHHHHHhCCceEEEcCcccccChhHHHhhhhhcccccceeccchhHHHH
Confidence 4667889999999999999999999998766542 24445555543 899999876433 347999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecC
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
|..++++..++.| -.+++-||..
T Consensus 215 et~e~~~~a~~~g-~~~ivShRSG 237 (296)
T d1w6ta1 215 ETFEAIEMAKEAG-YTAVVSHRSG 237 (296)
T ss_dssp HHHHHHHHHHHTT-CEEEEECCSS
T ss_pred HHHHHHHHHHHCC-ceEEeecCCC
Confidence 9999999988765 4788888865
|
| >d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=90.85 E-value=0.41 Score=41.75 Aligned_cols=95 Identities=17% Similarity=0.092 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh-----cceecccCCcc-CCHHHHHHHHhcC--CeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-----ADIIQIPAFLC-RQTDLLVAAAKTG--KIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~-----~d~~kIgs~~~-~n~~lL~~~a~~~--~PVilstG~~~tl~ 144 (290)
++-+.++.++++++-|..+=+||++++.+-..+. -.+..||.... ||...|+..-..+ -.|+||-++-+|+.
T Consensus 134 ~elid~y~~l~~~YPIisIEDp~~e~D~~gw~~lt~~~g~k~~iVGDDL~vTn~~rl~~gi~~~a~NaiLIK~NQiGTvt 213 (291)
T d2ptza1 134 EQLRETYCKWAHDYPIVSIEDPYDQDDFAGFAGITEALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTIS 213 (291)
T ss_dssp HHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHHTTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHH
T ss_pred HHHHHHHHHHhhccceeEecCCccccchhHHHHhhhccCceEEEecCcccccchHHHhhccccCCccceEecchhhhhHH
Confidence 3556889999999999998999999999865442 23555666544 8999998865443 38999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecC
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
|..+|++..++.| -.+++-||..
T Consensus 214 Et~ea~~la~~~g-~~~iiShRSG 236 (291)
T d2ptza1 214 EAIASSKLCMENG-WSVMVSHRSG 236 (291)
T ss_dssp HHHHHHHHHHHTT-CEEEEECCSB
T ss_pred HHHHHHHHHHHcC-eeEEeeCCCC
Confidence 9999999888775 4789999865
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=90.81 E-value=2.1 Score=35.59 Aligned_cols=188 Identities=16% Similarity=0.158 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
-+++|+.+.+. |++-+.-.-... .+ .+-..-+..+++.++..++|+.. =+.+.++++.+-+ .++
T Consensus 32 P~~~a~~~~~~----g~dei~iiDl~~-~~--------~~~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~ 98 (251)
T d1ka9f_ 32 PVEAARAYDEA----GADELVFLDISA-TH--------EERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGAD 98 (251)
T ss_dssp HHHHHHHHHHH----TCSCEEEEECCS-ST--------TCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHc----CCCEEEEEeccc-cc--------ccchhHHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCC
Confidence 46788888764 888666554442 11 01124567788999999998865 5777788888766 799
Q ss_pred eecccCCccCCHHHHHHHHhc-CC-eEEE--------------eCCC----CCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT-GK-IINI--------------KKGQ----FCASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~-~~-PVil--------------stG~----~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
.+-|+|...+|.++++++++. |. -++. ..|- ..++.||.. .+...|-..+++. ...
T Consensus 99 kVii~s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~eii~t-di~ 174 (251)
T d1ka9f_ 99 KVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAV---KGVELGAGEILLT-SMD 174 (251)
T ss_dssp EEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHH---HHHHHTCCEEEEE-ETT
T ss_pred EEEECchhhhCHHHHHHHHHhhcccccccccchhhcccceEEEeccceecCCccHHHHHH---HHHhcCCCEEEEE-eec
Confidence 999999999999999988752 21 1211 1221 124566555 4456676565554 333
Q ss_pred CCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 169 MFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 169 ~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
.-+.. .-.|+..+..+.+ +++||++- +|.+.. ..+. .+...|++|+++=+-|
T Consensus 175 ~dG~~-~G~d~~l~~~i~~~~~~pii~~--------------------GGv~~~-~dl~-~l~~~g~~gviig~al---- 227 (251)
T d1ka9f_ 175 RDGTK-EGYDLRLTRMVAEAVGVPVIAS--------------------GGAGRM-EHFL-EAFQAGAEAALAASVF---- 227 (251)
T ss_dssp TTTTC-SCCCHHHHHHHHHHCSSCEEEE--------------------SCCCSH-HHHH-HHHHTTCSEEEESHHH----
T ss_pred ccCcc-CCcchhHHHHHHhhcceeEEEe--------------------cCCCCH-HHHH-HHHHCCCCEEEEhHHH----
Confidence 21211 1246777878877 79999871 121111 2333 3456899999998766
Q ss_pred CCCCCCCCCChHHHHHHHHH
Q 022892 248 APVDGPTQWPLRNLEELLEE 267 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ 267 (290)
|...+++.++++.+.+
T Consensus 228 ----~~g~~~~~~~k~~l~~ 243 (251)
T d1ka9f_ 228 ----HFGEIPIPKLKRYLAE 243 (251)
T ss_dssp ----HTTSSCHHHHHHHHHH
T ss_pred ----HcCCCCHHHHHHHHHH
Confidence 5556777777776653
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=89.89 E-value=0.77 Score=39.28 Aligned_cols=152 Identities=15% Similarity=0.148 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCE-EeccccccCCCCCcc-----------------cCCCCChhHHHHHHHHHHHhc--C
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPL-VFKSSFDKANRTSSK-----------------SFRGPGMVEGLKILEKVKIAY--D 87 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~-V~~~~~~k~~rts~~-----------------~~~g~~~~~~l~~L~~~~~~~--G 87 (290)
+++.-.++.+.+++.+++.|..+ +....-....||... ||-.- .+.+..++++..+. .
T Consensus 56 ~~e~~~~~i~~iR~~~~~~g~~v~i~~d~~gp~~~t~kd~~di~~a~~~~vD~ialSFVrs--~~Dv~~ir~~l~~~~~~ 133 (258)
T d1pkla2 56 SHEYHQTTINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQFGVEQGVDMIFASFIRS--AEQVGDVRKALGPKGRD 133 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCEEEEECCCCCSSCHHHHHHHHHHHHHTCSEEEETTCCS--HHHHHHHHHHHCGGGTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccccccccccccccccHHHHHHHHHhcCCCeEEEeCCCC--HHHHHHHHHHHHHcCCC
Confidence 45666677777777777877543 222211111233222 12111 36677888888665 4
Q ss_pred CcEEEeecCcccHHHHhh---hcceecccCCcc-----------CCHHHHHHHHhcCCeEEEeCCC--------CCCHHH
Q 022892 88 IPIVTDVHETVQCEEVGK---VADIIQIPAFLC-----------RQTDLLVAAAKTGKIINIKKGQ--------FCASSV 145 (290)
Q Consensus 88 i~~~s~~~d~~~~~~l~~---~~d~~kIgs~~~-----------~n~~lL~~~a~~~~PVilstG~--------~~tl~e 145 (290)
+.+++-+-....++-+.+ ..|.+-|+-+++ -|..+++.+-..+|||++.|-| ..|-.|
T Consensus 134 ~~iiaKIE~~~al~nldeI~~~sDgImIaRGDLg~ei~~e~vp~~Qk~Ii~~~~~~~kpvivATq~LeSM~~~~~PTRAE 213 (258)
T d1pkla2 134 IMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAE 213 (258)
T ss_dssp SEEEEEECSHHHHHTHHHHHHHSSEEEECHHHHTTTSCHHHHHHHHHHHHHHHHHHTCCEEECSSSSGGGGTSSSCCHHH
T ss_pred CceEEEecCchhhhhhhhHHhhCCeeeEechhhhhhcchhhhhhHHHHHHHHHHHcCCCEEEEeceeHhhccCCCCCHHH
Confidence 678888888888877766 588888888875 3445667777889999998755 346788
Q ss_pred HHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh
Q 022892 146 MVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE 187 (290)
Q Consensus 146 ~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~ 187 (290)
+-..+..+. .|-+-++|..-+..-.||. .++.+|++
T Consensus 214 v~Dvanav~-dG~D~imLs~ETa~G~~P~-----~~V~~l~~ 249 (258)
T d1pkla2 214 VSDVANAVF-NGADCVMLSGETAKGKYPN-----EVVQYMAR 249 (258)
T ss_dssp HHHHHHHHH-HTCSEEEESHHHHTCSCHH-----HHHHHHHH
T ss_pred HHHHHHHHH-hCCCEEEEccccccCCCHH-----HHHHHHHH
Confidence 888887775 4666666644433323664 45555543
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=89.72 E-value=0.83 Score=38.05 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=88.3
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE-eecCcccHHHHh
Q 022892 27 ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT-DVHETVQCEEVG 104 (290)
Q Consensus 27 en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s-~~~d~~~~~~l~ 104 (290)
++.+...++++.|++ .|+.++-.. |+. ...++.+++.++++ ++.+-. |+.++++++.+.
T Consensus 26 ~~~~~a~~~~~al~~----~Gi~~iEit------------l~~---p~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~ 86 (216)
T d1mxsa_ 26 AREEDILPLADALAA----GGIRTLEVT------------LRS---QHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVE 86 (216)
T ss_dssp SCGGGHHHHHHHHHH----TTCCEEEEE------------SSS---THHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----CCCCEEEEe------------CCC---hhHHHHHHHHHHhCCCcceeeeeeecHHHHHHHH
Confidence 366778888888888 588876442 111 35677777777776 454444 999999999988
Q ss_pred h-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCC-CCchhH
Q 022892 105 K-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLI-VDPRNL 182 (290)
Q Consensus 105 ~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~-~dL~~i 182 (290)
+ .++|+--+. .|.++++++-+.+.|++ -|.. |+.|+..|.+ .|-+-+=+ ||... .-...+
T Consensus 87 ~aGa~FivsP~---~~~~v~~~a~~~~i~~i--PGv~-TpsEi~~A~~----~G~~~vKl--------FPA~~~~g~~~i 148 (216)
T d1mxsa_ 87 AAGAQFVVTPG---ITEDILEAGVDSEIPLL--PGIS-TPSEIMMGYA----LGYRRFKL--------FPAEISGGVAAI 148 (216)
T ss_dssp HHTCSSEECSS---CCHHHHHHHHHCSSCEE--CEEC-SHHHHHHHHT----TTCCEEEE--------TTHHHHTHHHHH
T ss_pred hCCCCEEECCC---CcHHHHHHHHhcCCCcc--CCcC-CHHHHHHHHH----CCCCEEEe--------ccccccccHHHH
Confidence 7 688776665 67899999999999887 5666 9999999865 45433333 44321 223455
Q ss_pred HHHHh-c-CCCEE
Q 022892 183 EWMRE-A-NCPVV 193 (290)
Q Consensus 183 ~~lk~-~-~~pV~ 193 (290)
..|+. | +++++
T Consensus 149 kal~~p~p~~~fi 161 (216)
T d1mxsa_ 149 KAFGGPFGDIRFC 161 (216)
T ss_dssp HHHHTTTTTCEEE
T ss_pred HHHhcccccCcee
Confidence 55555 3 45554
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=89.52 E-value=2.4 Score=37.16 Aligned_cols=192 Identities=15% Similarity=0.127 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe--ecCcccH--------
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD--VHETVQC-------- 100 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~--~~d~~~~-------- 100 (290)
.-++.|+...+ .|+|-+...-.+. .+...+ .-..-++.+++.+++..+|+..- +.+.+++
T Consensus 49 dP~~~a~~~~~----~gaDeL~ivDida-s~~~~~-----~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~ 118 (323)
T d1jvna1 49 KPVQLAQKYYQ----QGADEVTFLNITS-FRDCPL-----KDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPAL 118 (323)
T ss_dssp HHHHHHHHHHH----TTCSEEEEEEEC----CCCG-----GGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHH
T ss_pred CHHHHHHHHHH----CCCCEEEEEECcC-CCCCcC-----CCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhh
Confidence 34788888877 5999776654442 111110 00245788999999999999663 5554443
Q ss_pred ---H-HHhhhcceecccCCccCCHHHHHHH-------------Hh-cC---Ce---------------------------
Q 022892 101 ---E-EVGKVADIIQIPAFLCRQTDLLVAA-------------AK-TG---KI--------------------------- 132 (290)
Q Consensus 101 ---~-~l~~~~d~~kIgs~~~~n~~lL~~~-------------a~-~~---~P--------------------------- 132 (290)
. ++...+|-+-|++.-++|.+++.++ ++ .| .-
T Consensus 119 e~A~~ll~~GadKVvI~T~ai~~p~~~~e~~~~~~n~~li~~i~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~ 198 (323)
T d1jvna1 119 EVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPG 198 (323)
T ss_dssp HHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCC
T ss_pred HHHHHHHHcCCCeEEechHHhhChHHHHHHHhhcccchhHHHHHHHhCCceEEEEEEEEecccccccccccccccccccc
Confidence 3 4445899999999888776655443 32 11 11
Q ss_pred ----------EEEeCCC---CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCC
Q 022892 133 ----------INIKKGQ---FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTH 198 (290)
Q Consensus 133 ----------VilstG~---~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sH 198 (290)
|....|. ..++.||.. .+...|-..| |+.....-+.- .-.|+..+..+++ ..+||++.
T Consensus 199 ~~~~~~~~y~v~~~gg~~~t~~~l~~~i~---~~~~~G~GEI-lltdIdrDGt~-~G~D~el~~~i~~~~~iPiIas--- 270 (323)
T d1jvna1 199 PNGEKYCWYQCTIKGGRESRDLGVWELTR---ACEALGAGEI-LLNCIDKDGSN-SGYDLELIEHVKDAVKIPVIAS--- 270 (323)
T ss_dssp TTCCCEEEEEEEETTTTEEEEEEHHHHHH---HHHHTTCCEE-EECCGGGTTTC-SCCCHHHHHHHHHHCSSCEEEC---
T ss_pred CCCccceeEEEEEcCCeEecCchHHHHhh---hhhccCccee-EEEeecccccc-cccchhHHHHHHHhCCCCEEEE---
Confidence 1121221 114666665 4556676664 44554432211 1247788888887 79999871
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHH
Q 022892 199 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLE 266 (290)
Q Consensus 199 s~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~ 266 (290)
+|.... ..+..+-...|++|+++=+-| |..-.++.++++.+.
T Consensus 271 -----------------GGi~s~-~di~~ll~~~~v~gv~~gs~~--------~~~~~si~elK~~L~ 312 (323)
T d1jvna1 271 -----------------SGAGVP-EHFEEAFLKTRADACLGAGMF--------HRGEFTVNDVKEYLL 312 (323)
T ss_dssp -----------------SCCCSH-HHHHHHHHHSCCSEEEESHHH--------HTTSCCHHHHHHHHH
T ss_pred -----------------CCCCCH-HHHHHHHHhCCCeEEEEhhHH--------HcCCCCHHHHHHHHH
Confidence 121111 233333345689999988766 444556777776654
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.65 E-value=2.4 Score=33.82 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhc-CCcEEEeecCcccHHHHhh-hcceecccCCccCC---------HHHHHHHHhcCCeEEEeCCCCCCH
Q 022892 75 GLKILEKVKIAY-DIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQ---------TDLLVAAAKTGKIINIKKGQFCAS 143 (290)
Q Consensus 75 ~l~~L~~~~~~~-Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n---------~~lL~~~a~~~~PVilstG~~~tl 143 (290)
.++.++++.... |+.++.++.+.+.+..+.+ .+|++.+..+..++ ..+.+.....+.||+..-|.. |.
T Consensus 117 ~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~-t~ 195 (230)
T d1yxya1 117 IASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIH-SP 195 (230)
T ss_dssp HHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHTTCCEEEESCCC-SH
T ss_pred HHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhcCCCeEEEeCCCC-CH
Confidence 355566655554 7888889999999988877 69999888876633 334455566899999999999 99
Q ss_pred HHHHHHHHHHHHcCCCcEE
Q 022892 144 SVMVNSAEKVRLAGNPNVM 162 (290)
Q Consensus 144 ~e~~~Ave~i~~~Gn~~i~ 162 (290)
+++..+.+ .|-+-++
T Consensus 196 ~d~~~al~----~GAd~V~ 210 (230)
T d1yxya1 196 EEAKKIND----LGVAGIV 210 (230)
T ss_dssp HHHHHHHT----TCCSEEE
T ss_pred HHHHHHHH----cCCCEEE
Confidence 99988753 4654433
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=88.50 E-value=5.7 Score=32.78 Aligned_cols=186 Identities=10% Similarity=0.048 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh---cCCcEEEee--cCcccHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA---YDIPIVTDV--HETVQCEE 102 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~---~Gi~~~s~~--~d~~~~~~ 102 (290)
+.+..+++++.|.++ |++.|=-.++.. +..+...+.... ....+.+...... .++..+... .+.+.+..
T Consensus 27 s~e~k~~i~~~L~~~----Gv~~IEvG~~~~-~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 100 (289)
T d1nvma2 27 TLDDVRAIARALDKA----KVDSIEVAHGDG-LQGSSFNYGFGR-HTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKN 100 (289)
T ss_dssp CHHHHHHHHHHHHHH----TCSEEECSCTTS-TTCCBTTTBCCS-SCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHH
T ss_pred CHHHHHHHHHHHHHc----CCCEEEeCCCcC-cccccchhhhcc-chHHHHHHHHHHhcchhHHHHHHhhhhhhHHHHHH
Confidence 667888888888874 999876543221 111111111011 1223333433332 233322221 11222333
Q ss_pred Hhh-hcceecccCC--ccCCH-HHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCC
Q 022892 103 VGK-VADIIQIPAF--LCRQT-DLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLI 176 (290)
Q Consensus 103 l~~-~~d~~kIgs~--~~~n~-~lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~ 176 (290)
..+ .++.+.+... ++.+. +.++.+-+.+..+.+. --...+.+.+...++.+...|-..|.|+...... .|. +
T Consensus 101 ~~~~~~~~~r~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~I~l~DT~G~~-~P~-~ 178 (289)
T d1nvma2 101 AYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAM-SMN-D 178 (289)
T ss_dssp HHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCC-CHH-H
T ss_pred HHHhcccceEEEeehhhhhhHhHHHHHHHHhCCceeeEeeeccccCchhhhHHHHhhccccceeeeecchhhcc-cch-h
Confidence 333 4665555433 22222 4445555567655432 2223378889999999999898877787765431 221 1
Q ss_pred CCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 177 VDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 177 ~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+- +-+..+++ + ++++++ +.|.. +.+...-+.+|+..||+ +|+.-+
T Consensus 179 v~-~~v~~l~~~~~~~~~i~~-H~Hn~------------------~g~a~an~l~A~~~G~~--~id~si 226 (289)
T d1nvma2 179 IR-DRMRAFKAVLKPETQVGM-HAHHN------------------LSLGVANSIVAVEEGCD--RVDASL 226 (289)
T ss_dssp HH-HHHHHHHHHSCTTSEEEE-ECBCT------------------TSCHHHHHHHHHHTTCC--EEEEBG
T ss_pred HH-HHHHHHHHHhccccccee-eechH------------------HHHHHHHHHHHHHhCCc--Eeeccc
Confidence 21 34455666 4 478999 77763 22335557789999998 777655
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.39 E-value=6.2 Score=33.02 Aligned_cols=155 Identities=10% Similarity=0.075 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhc
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVA 107 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~ 107 (290)
+.+..++..+++++ +....+|.+.||+. . +.-|++...+-|++.|+.-+--|--|-.
T Consensus 64 ~~~~~~~~~~~~r~---~~~~pivlm~Y~N~--------i----~~~G~~~f~~~~~~~Gv~GliipDLP~e-------- 120 (248)
T d1geqa_ 64 KLREAFWIVKEFRR---HSSTPIVLMTYYNP--------I----YRAGVRNFLAEAKASGVDGILVVDLPVF-------- 120 (248)
T ss_dssp CHHHHHHHHHHHHT---TCCCCEEEEECHHH--------H----HHHCHHHHHHHHHHHTCCEEEETTCCGG--------
T ss_pred cHHHHHHHHHHHhh---cCCCcEEEEecccc--------c----cccCHHHHhhhhcccCeeEEeccCCcHH--------
Confidence 34555666665543 35578888887773 1 1467888888889999988876655421
Q ss_pred ceecccCCccCCHHHHHHHHhcCC-eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC---CCCchhHH
Q 022892 108 DIIQIPAFLCRQTDLLVAAAKTGK-IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL---IVDPRNLE 183 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~~~~-PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~---~~dL~~i~ 183 (290)
...++...+.+.+. +|.|=+.++ +.+-++..++ ..+.-+-+.-+-+-.+-... .+ ...+.
T Consensus 121 ----------E~~~~~~~~~~~gl~~I~lvaPtt-~~~ri~~i~~----~s~gFiY~vs~~GvTG~~~~~~~~~-~~~v~ 184 (248)
T d1geqa_ 121 ----------HAKEFTEIAREEGIKTVFLAAPNT-PDERLKVIDD----MTTGFVYLVSLYGTTGAREEIPKTA-YDLLR 184 (248)
T ss_dssp ----------GHHHHHHHHHHHTCEEEEEECTTC-CHHHHHHHHH----HCSSEEEEECCC-------CCCHHH-HHHHH
T ss_pred ----------HHHHHHhhccccCcceEEEecccc-hhHHHHHHHh----cCCCeEEEEecccccccchhhhhhH-HHHHH
Confidence 11255556666666 566677766 6666665544 22223333222211111111 11 24567
Q ss_pred HHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 184 WMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 184 ~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.+|+ +++||.+ --++ .. ++.++.++..||||+|+=+++
T Consensus 185 ~vk~~t~~Pv~v--GFGI---------------~~-----~e~v~~~~~~~ADGvIVGSai 223 (248)
T d1geqa_ 185 RAKRICRNKVAV--GFGV---------------SK-----REHVVSLLKEGANGVVVGSAL 223 (248)
T ss_dssp HHHHHCSSCEEE--ESCC---------------CS-----HHHHHHHHHTTCSEEEECHHH
T ss_pred HHhhhcccceee--eccc---------------CC-----HHHHHHHHhcCCCEEEECHHH
Confidence 7788 7899755 1111 12 455666677899999998886
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=88.26 E-value=3.5 Score=34.91 Aligned_cols=196 Identities=15% Similarity=0.180 Sum_probs=104.3
Q ss_pred hHHhhhcCCCCeEEEE--ccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHH
Q 022892 6 ALFNQLKAAEPFFLLA--GPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVK 83 (290)
Q Consensus 6 ~~~~~i~~~~~~~iIA--gpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~ 83 (290)
++|+....-.+.=||| ||.+. ..+.-++|++. |+++++.. |. .++... ..+.++.+++..
T Consensus 10 ~~~~p~~~~r~TKIIaTiGPas~-----~~~~l~~li~a----Gvdv~RiN-~S---Hg~~e~-----~~~~i~~iR~~~ 71 (258)
T d1pkla2 10 SIFDPVANYRAARIICTIGPSTQ-----SVEALKGLIQS----GMSVARMN-FS---HGSHEY-----HQTTINNVRQAA 71 (258)
T ss_dssp CTTSCCCSCCCSEEEEECCGGGC-----SHHHHHHHHHH----TEEEEEEE-TT---SSCHHH-----HHHHHHHHHHHH
T ss_pred cccCCcccCCCCcEEEeeCCCcC-----CHHHHHHHHHc----CCCEEEEE-CC---CCCHHH-----HHHHHHHHHHHH
Confidence 3444444445566777 78762 34556777774 99977664 22 111110 135677788999
Q ss_pred HhcCCcEEE--ee--------cCcccHHHHhh-hcceeccc-CCccCCHHHHHH-HHhc--CCeEEEeCCCCCCHHHHHH
Q 022892 84 IAYDIPIVT--DV--------HETVQCEEVGK-VADIIQIP-AFLCRQTDLLVA-AAKT--GKIINIKKGQFCASSVMVN 148 (290)
Q Consensus 84 ~~~Gi~~~s--~~--------~d~~~~~~l~~-~~d~~kIg-s~~~~n~~lL~~-~a~~--~~PVilstG~~~tl~e~~~ 148 (290)
++.|.++.. +. .|..++++..+ .+||+.+. -++..+...++. +... ..+|+-|-- +.+-+.+
T Consensus 72 ~~~g~~v~i~~d~~gp~~~t~kd~~di~~a~~~~vD~ialSFVrs~~Dv~~ir~~l~~~~~~~~iiaKIE---~~~al~n 148 (258)
T d1pkla2 72 AELGVNIAIALDTKGPPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIE---NHQGVQN 148 (258)
T ss_dssp HHTTCCCEEEEECCCCCSSCHHHHHHHHHHHHHTCSEEEETTCCSHHHHHHHHHHHCGGGTTSEEEEEEC---SHHHHHT
T ss_pred HHhCCCccccccccccccccccHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHHHcCCCCceEEEec---Cchhhhh
Confidence 998876533 22 33445666656 58988665 223333333343 3332 335666655 3444444
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHH--------hcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcc
Q 022892 149 SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMR--------EANCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 220 (290)
Q Consensus 149 Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk--------~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~ 220 (290)
.=+++... +-+++-||-- .-++.+..++.++ +.+.||++ .++-+.+.- ....--|.
T Consensus 149 ldeI~~~s---DgImIaRGDL----g~ei~~e~vp~~Qk~Ii~~~~~~~kpviv-ATq~LeSM~--------~~~~PTRA 212 (258)
T d1pkla2 149 IDSIIEES---DGIMVARGDL----GVEIPAEKVVVAQKILISKCNVAGKPVIC-ATQMLESMT--------YNPRPTRA 212 (258)
T ss_dssp HHHHHHHS---SEEEECHHHH----TTTSCHHHHHHHHHHHHHHHHHHTCCEEE-CSSSSGGGG--------TSSSCCHH
T ss_pred hhhHHhhC---CeeeEechhh----hhhcchhhhhhHHHHHHHHHHHcCCCEEE-EeceeHhhc--------cCCCCCHH
Confidence 33444432 4688889851 0123334444432 25889988 776531110 00011122
Q ss_pred cHHHHHHHHHHcCCCEEEE
Q 022892 221 LIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 221 ~~~~~a~aAva~GA~G~~I 239 (290)
-+..++ -|+..|+||+|+
T Consensus 213 Ev~Dva-nav~dG~D~imL 230 (258)
T d1pkla2 213 EVSDVA-NAVFNGADCVML 230 (258)
T ss_dssp HHHHHH-HHHHHTCSEEEE
T ss_pred HHHHHH-HHHHhCCCEEEE
Confidence 334444 367889999998
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=87.50 E-value=0.99 Score=35.95 Aligned_cols=96 Identities=15% Similarity=0.078 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-C--CCCCCCCCchhHHHHHh-cCCCEEEeC
Q 022892 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-F--GYNDLIVDPRNLEWMRE-ANCPVVADV 196 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~--~y~~~~~dL~~i~~lk~-~~~pV~~D~ 196 (290)
+.++.+...+.-+++-.+.. |.++.+.+. +.|-.-+.....+.. . .......++..+..+++ .++||+.+.
T Consensus 108 ~~~~~~~~~~~~~~v~~~~~-t~~~a~~~~----~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iPVia~G 182 (222)
T d1y0ea_ 108 ELVSYIRTHAPNVEIMADIA-TVEEAKNAA----RLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEG 182 (222)
T ss_dssp HHHHHHHHHCTTSEEEEECS-SHHHHHHHH----HTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHhCCceEEeecCC-CHHHHHHHH----HcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcCCCcEEEeC
Confidence 45555555554444444455 788877653 355543332222111 1 11111233455666666 789998853
Q ss_pred CCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 197 THSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 197 sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.=+ . ..-+..+.++||+|++|=+-+
T Consensus 183 GI~----------------t------~~d~~~~~~~GAdgV~iGsAi 207 (222)
T d1y0ea_ 183 NVI----------------T------PDMYKRVMDLGVHCSVVGGAI 207 (222)
T ss_dssp SCC----------------S------HHHHHHHHHTTCSEEEECHHH
T ss_pred CCC----------------C------HHHHHHHHHcCCCEEEEchhh
Confidence 321 1 334556788999999998876
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=87.29 E-value=6.5 Score=32.01 Aligned_cols=117 Identities=9% Similarity=0.097 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHH-HHhh--------hccee--cccCCccCCHHHHHHHHhc-----------C
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCE-EVGK--------VADII--QIPAFLCRQTDLLVAAAKT-----------G 130 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~-~l~~--------~~d~~--kIgs~~~~n~~lL~~~a~~-----------~ 130 (290)
..+.++|+.|++.+|+++.+ +.++.++. .+.+ ..|.+ =-+.+.-.|..+++++.+. .
T Consensus 50 ~gA~eQL~~~a~~l~v~~~~-~~~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p 128 (211)
T d2qy9a2 50 AAAVEQLQVWGQRNNIPVIA-QHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAP 128 (211)
T ss_dssp HHHHHHHHHHHHHTTCCEEC-CSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCC
T ss_pred ccchhhhhhhhhhcCCcccc-cccCCCHHHHHHHHHHHHHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCc
Confidence 46899999999999999984 34443332 2221 23444 4455666676676665533 1
Q ss_pred -CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHH-HhcCCCEEEeCCCC
Q 022892 131 -KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWM-REANCPVVADVTHS 199 (290)
Q Consensus 131 -~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~l-k~~~~pV~~D~sHs 199 (290)
.++++-..+. ..+++..+.......|-..+++..--.. ..+.++-.+ .++++||.| .+.+
T Consensus 129 ~~~~LVl~a~~-~~~~~~~~~~~~~~~~~~~lIlTKlDe~-------~~~G~~l~~~~~~~~Pi~~-i~~G 190 (211)
T d2qy9a2 129 HEVMLTIDAST-GQNAVSQAKLFHEAVGLTGITLTKLDGT-------AKGGVIFSVADQFGIPIRY-IGVG 190 (211)
T ss_dssp SEEEEEEEGGG-THHHHHHHHHHHHHSCCCEEEEECCTTC-------TTTTHHHHHHHHHCCCEEE-EECS
T ss_pred ceeeeehhccc-CcchHHHHhhhhhccCCceEEEeecCCC-------CCccHHHHHHHHHCCCEEE-EeCC
Confidence 2333333333 5888888888888777777887664332 223333333 448999988 4443
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=87.18 E-value=3.4 Score=36.19 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=81.4
Q ss_pred HHHHHHHhcCCcEEEee-cCcccHHHHhhhc--------ceecccCCccCCHHHHHHHHhcCC-eEEEeC---CC--CCC
Q 022892 78 ILEKVKIAYDIPIVTDV-HETVQCEEVGKVA--------DIIQIPAFLCRQTDLLVAAAKTGK-IINIKK---GQ--FCA 142 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~-~d~~~~~~l~~~~--------d~~kIgs~~~~n~~lL~~~a~~~~-PVilst---G~--~~t 142 (290)
++...++-+|.+..... ++-...-...-.. +.+ |-| ...+....+.+.-.+. |+.+.+ +. ..+
T Consensus 118 ~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~v-i~s-~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d 195 (434)
T d2z67a1 118 ILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVV-IYP-YASHKSPIKAVSFVGMNMRLVETVLDGDRVYVP 195 (434)
T ss_dssp HHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEE-EEE-CCCCHHHHHHHHHTTCEEEEECCEEETTEEECC
T ss_pred HHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceE-EEe-ccCCHHHHHHHHHhCCcceEEEeecCCCccCCC
Confidence 45677788888765433 3332221111111 111 222 2245556666655443 666642 21 238
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCccc
Q 022892 143 SSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 221 (290)
Q Consensus 143 l~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~ 221 (290)
+++++++++.-...++.-++++.-+++ ++...-|+..|..+.+ .++++++|..|+. +. ..
T Consensus 196 ~~~l~~~i~~~~~~~~~~~v~~~~~~~--~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~----------------~~-~~ 256 (434)
T d2z67a1 196 VEDIENAIKKEIELGNRPCVLSTLTFF--PPRNSDDIVEIAKICENYDIPHIINGAYAI----------------QN-NY 256 (434)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSCC--TTBCCCCHHHHHHHHHHHTCCEEEECTTTT----------------TC-HH
T ss_pred HHHHHHHHHhhhhcCCceEEEeccCcC--CCccccCHHHHHHHHHHhCCeEEEeccchh----------------hh-hh
Confidence 999999998777677655554444432 1222346888888866 8999999999974 11 11
Q ss_pred HHHHHHHHHHcCCCEEEEeee
Q 022892 222 IPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 222 ~~~~a~aAva~GA~G~~IEkH 242 (290)
.......+...|+|-++...|
T Consensus 257 ~~~~~~~~~~~~~D~~~~s~h 277 (434)
T d2z67a1 257 YLEKLKKAFKYRVDAVVSSSD 277 (434)
T ss_dssp HHHHHHHHHTSCCSEEEEEHH
T ss_pred ccccccccccCCcceEEEcCc
Confidence 122333456678887777766
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=86.43 E-value=3.1 Score=35.36 Aligned_cols=154 Identities=16% Similarity=0.137 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCc------------cCCH---HHHHHHHh-cCCeEEEe--
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFL------------CRQT---DLLVAAAK-TGKIINIK-- 136 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~------------~~n~---~lL~~~a~-~~~PVils-- 136 (290)
+..|++..++---.++.|.+|...+..+++ .+|++-||... ++-- ...+++.+ .+.+.++.
T Consensus 4 i~~L~~~K~~g~ki~~lTayD~~~A~~~~~agvDiiLVGDSlgmv~~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~Dm 83 (262)
T d1m3ua_ 4 ISLLQKYKQEKKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADL 83 (262)
T ss_dssp HHHHHHHHHHTCCEEEEECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HHHHHHHHhCCCcEEEEEcCCHHHHHHHHHCCCCEEEEcCcHHhcccCCCCcceechHhHHHHHHHHHhccccceeEecc
Confidence 345666654444456679999999999988 79999999641 1111 22344443 34444433
Q ss_pred -CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccC
Q 022892 137 -KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 137 -tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
-|...+.++..+.+..+.+.|. +.+-|++|.. ....|..|.+.|+||+. |.=-.|-.... .|+-..
T Consensus 84 Pf~sy~~~~~a~~~a~~l~~~GA-daVKlEgg~~--------~~~~I~~L~~~gIPV~g---HiGL~PQ~~~~-~GG~r~ 150 (262)
T d1m3ua_ 84 PFMAYATPEQAFENAATVMRAGA-NMVKIEGGEW--------LVETVQMLTERAVPVCG---HLGLTPQSVNI-FGGYKV 150 (262)
T ss_dssp CTTSSSSHHHHHHHHHHHHHTTC-SEEECCCSGG--------GHHHHHHHHHTTCCEEE---EEESCGGGHHH-HTSSCC
T ss_pred ccccchhhHHHHHHHHHHHhcCC-cEEEeccchh--------HHHHHHHHHHcCCeEEe---ehhhchhhhhh-cCCccc
Confidence 3344567777777777777764 6788887642 23577778778999965 53111110000 011111
Q ss_pred CCC----cccHHHHHHHHHHcCCCEEEEeee
Q 022892 216 GGL----RELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 216 ~g~----~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
-|. ...+...+++--.+||.++++|.=
T Consensus 151 qGkt~~ea~~l~~~a~~le~AGaf~ivlE~v 181 (262)
T d1m3ua_ 151 QGRGDEAGDQLLSDALALEAAGAQLLVLECV 181 (262)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred cCccHHHHHHHHHHHHHHHhhcceEEEEecc
Confidence 121 112344455556789999999964
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=86.42 E-value=0.86 Score=41.15 Aligned_cols=88 Identities=14% Similarity=0.097 Sum_probs=62.4
Q ss_pred HHHHH-HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCC
Q 022892 121 DLLVA-AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTH 198 (290)
Q Consensus 121 ~lL~~-~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sH 198 (290)
.|++. +.+.|..+-+=.. . ++++|++|++ .|.+++.+|.-++ ..-...|++.+..+.+ .|+++++|.+.
T Consensus 113 ~l~~~~~~~~Gi~~~~~d~-~-d~~~~~~ai~-----~~t~lv~~Esp~N--P~l~v~Di~~i~~ia~~~g~~~vvDnT~ 183 (392)
T d1gc0a_ 113 AFLHHGIGEFGVKLRHVDM-A-DLQALEAAMT-----PATRVIYFESPAN--PNMHMADIAGVAKIARKHGATVVVDNTY 183 (392)
T ss_dssp HHHHHTGGGGTCEEEEECT-T-CHHHHHHHCC-----TTEEEEEEESSCT--TTCCCCCHHHHHHHHGGGTCEEEEECTT
T ss_pred hhhhhhhccCCcccccCCc-c-CHHHHHHhCC-----CCCeEEEeccccc--ceeeecchHHHHHHHHhcCCEEEEecCc
Confidence 45544 4667877665443 3 6888887753 4678999998775 3335789999999877 89999999888
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 199 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 199 s~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
+. .+......+||| ++|.+
T Consensus 184 at-----------------------P~~~~Pl~~GaD-ivihS 202 (392)
T d1gc0a_ 184 CT-----------------------PYLQRPLELGAD-LVVHS 202 (392)
T ss_dssp TH-----------------------HHHCCGGGGTCS-EEEEE
T ss_pred cC-----------------------ccccChHHhCCC-EEEEe
Confidence 72 233345788999 78775
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=86.14 E-value=3.6 Score=29.81 Aligned_cols=82 Identities=12% Similarity=0.149 Sum_probs=47.4
Q ss_pred HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC-chhHHHHHh--cCCCEEEeCCCCCCC
Q 022892 126 AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD-PRNLEWMRE--ANCPVVADVTHSLQQ 202 (290)
Q Consensus 126 ~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d-L~~i~~lk~--~~~pV~~D~sHs~~~ 202 (290)
+.+.|.-|+-. +.+.+|. ++.+++ .+++++|+.-.- |. .| +..+..+|+ .++||++=+.|+.
T Consensus 21 L~~~g~~v~~~---a~~~~~a---l~~~~~-~~~dliilD~~m----p~--~~G~e~~~~ir~~~~~~pvi~ls~~~~-- 85 (118)
T d1u0sy_ 21 ITKAGYEVAGE---ATNGREA---VEKYKE-LKPDIVTMDITM----PE--MNGIDAIKEIMKIDPNAKIIVCSAMGQ-- 85 (118)
T ss_dssp HHHTTCEEEEE---ESSHHHH---HHHHHH-HCCSEEEEECSC----GG--GCHHHHHHHHHHHCTTCCEEEEECTTC--
T ss_pred HHHcCCceEEE---ECCHHHH---HHHHHh-ccCCEEEEecCC----CC--CCHHHHHHHHHHhCCCCcEEEEEccCC--
Confidence 45667665421 1134444 444443 368899987432 21 11 233444555 4689888566762
Q ss_pred CCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 203 PAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
......|..+||++ +|-|=+
T Consensus 86 --------------------~~~~~~a~~~Ga~~-yl~KP~ 105 (118)
T d1u0sy_ 86 --------------------QAMVIEAIKAGAKD-FIVKPF 105 (118)
T ss_dssp --------------------HHHHHHHHHTTCCE-EEESSC
T ss_pred --------------------HHHHHHHHHcCCCE-EEECCC
Confidence 66777889999998 455644
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.83 E-value=0.85 Score=35.49 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=47.0
Q ss_pred hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 106 VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 106 ~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
.+|++-|.+-.-++.++..++-..|++|++.+.++.+++|...-++..++.|
T Consensus 65 ~iD~V~I~tp~~~H~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~ 116 (172)
T d1lc0a1 65 EIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKG 116 (172)
T ss_dssp SEEEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTT
T ss_pred CcchhhhcccccccccccccccccchhhhcCCCccccHHHHHHHHHHHHHcC
Confidence 5889999998888999999999999999999999999999999998777664
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=85.68 E-value=2.9 Score=34.01 Aligned_cols=130 Identities=17% Similarity=0.233 Sum_probs=83.4
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh--cCCcEE-EeecCcccHHHH
Q 022892 27 ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA--YDIPIV-TDVHETVQCEEV 103 (290)
Q Consensus 27 en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~--~Gi~~~-s~~~d~~~~~~l 103 (290)
++.+...++++.|++ .|+.++=.. + |+ ...++.+++++++ -++.+- -|+.++++++.+
T Consensus 18 ~~~~~a~~~~~al~~----~Gi~~iEit-l----r~----------p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a 78 (202)
T d1wa3a1 18 NSVEEAKEKALAVFE----GGVHLIEIT-F----TV----------PDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKA 78 (202)
T ss_dssp SSHHHHHHHHHHHHH----TTCCEEEEE-T----TS----------TTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----cCCCEEEEe-c----CC----------ccHHHHHHHHHHhcCCCcEEEecccccHHHHHHH
Confidence 366777777777776 689887542 1 11 1234444444322 456564 499999999998
Q ss_pred hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhH
Q 022892 104 GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 182 (290)
Q Consensus 104 ~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i 182 (290)
.+ .++++--+. .|.++++++-+.+.|++ -|.. |+.|+..|.+ .|-+-+-+ ||....-...+
T Consensus 79 ~~aGa~fivsP~---~~~~v~~~~~~~~i~~i--PGv~-TpsEi~~A~~----~G~~~lK~--------fPa~~~G~~~l 140 (202)
T d1wa3a1 79 VESGAEFIVSPH---LDEEISQFCKEKGVFYM--PGVM-TPTELVKAMK----LGHTILKL--------FPGEVVGPQFV 140 (202)
T ss_dssp HHHTCSEEECSS---CCHHHHHHHHHHTCEEE--CEEC-SHHHHHHHHH----TTCCEEEE--------TTHHHHHHHHH
T ss_pred HhhcccEEeCCC---CcHHHHHHHHhcCCcee--CCcC-cHHHHHHHHH----CCCCEEEe--------cchhhcCHHHH
Confidence 87 799886443 45789999888888876 4666 9999999864 56543333 34322223445
Q ss_pred HHHHh-c-CCCEE
Q 022892 183 EWMRE-A-NCPVV 193 (290)
Q Consensus 183 ~~lk~-~-~~pV~ 193 (290)
..|+. + ++|++
T Consensus 141 k~l~~p~p~i~~i 153 (202)
T d1wa3a1 141 KAMKGPFPNVKFV 153 (202)
T ss_dssp HHHHTTCTTCEEE
T ss_pred HHHhCcccCCcEE
Confidence 55555 4 56664
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=85.03 E-value=9.7 Score=31.92 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=96.7
Q ss_pred hhHHhhhcCCCCeEEEEcc-------CCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH
Q 022892 5 TALFNQLKAAEPFFLLAGP-------NVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK 77 (290)
Q Consensus 5 ~~~~~~i~~~~~~~iIAgp-------csien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~ 77 (290)
.+++..+...+++-||||. |.+...-...++|+.. + .|+.++-- .|-+..|.| .+.
T Consensus 29 ~~f~~al~~~~~~~iIAEiKr~SPS~G~i~~~~d~~~~a~~y-e----~GA~aiSV-------LTd~~~F~G-----s~~ 91 (251)
T d1i4na_ 29 HRFLEVLSGKERVKIIAEFKKASPSAGDINADASLEDFIRMY-D----ELADAISI-------LTEKHYFKG-----DPA 91 (251)
T ss_dssp CHHHHHHCCSSSCEEEEEECSBCSSSCBSCTTCCHHHHHHHH-H----HHCSEEEE-------ECCCSSSCC-----CTH
T ss_pred chHHHHHhcCCCCeEEEeeecCCCCCCCCcCCccHHHHHHHH-h----cCCcceEE-------ecccCCCCC-----CHH
Confidence 4677777656679999975 3332111234566533 3 38877632 222333543 245
Q ss_pred HHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcceecccCCccC--C-HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTD--VHETVQCEEVGK-VADIIQIPAFLCR--Q-TDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~~--n-~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
.|.++++..++|++-- +.|+.++..... .+|++-+=+.-++ + ..|++.+-.+|+-+++... +.+|+..|++
T Consensus 92 ~l~~vr~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgle~LvEvh---~~~El~~al~ 168 (251)
T d1i4na_ 92 FVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVH---SREDLEKVFS 168 (251)
T ss_dssp HHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEEC---SHHHHHHHHT
T ss_pred HHHHHhhcccCchhhhhhhhCHHHHHHHHhhccceEEeecccccHHHHHHHHHHHHHhCCeeecccC---CHHHHHHHhc
Confidence 6777888899999995 456666666555 5787544444443 2 3677888899999999965 8999998754
Q ss_pred HHHHcCCCcEE-EEeecCCCCCCCCCCCchhHHHHHh
Q 022892 152 KVRLAGNPNVM-VCERGTMFGYNDLIVDPRNLEWMRE 187 (290)
Q Consensus 152 ~i~~~Gn~~i~-L~~~gs~~~y~~~~~dL~~i~~lk~ 187 (290)
. +..+++ +=.| +..+..+|+.....|..
T Consensus 169 ~----~~a~iiGINnR----dL~t~~vd~~~~~~L~~ 197 (251)
T d1i4na_ 169 V----IRPKIIGINTR----DLDTFEIKKNVLWELLP 197 (251)
T ss_dssp T----CCCSEEEEECB----CTTTCCBCTTHHHHHGG
T ss_pred c----cccceeeeeec----chhccchhhhHHHHHHh
Confidence 2 233444 3333 34556678877766654
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=84.81 E-value=1.2 Score=40.03 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=48.8
Q ss_pred HHHHHHHHhc-CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCC
Q 022892 120 TDLLVAAAKT-GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVT 197 (290)
Q Consensus 120 ~~lL~~~a~~-~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~s 197 (290)
..+++..... +.-+.+- ... +.+++++++. .|..++.+|.-++ +.-...|+..+..+.+ .|+++++|.+
T Consensus 103 ~~~~~~~~~~~g~~~~~~-d~~-d~~~~~~~~~-----~~t~~v~~EspsN--P~l~v~Di~~i~~ia~~~g~~~vVDNT 173 (384)
T d1cs1a_ 103 YRLFDSLAKRGCYRVLFV-DQG-DEQALRAALA-----EKPKLVLVESPSN--PLLRVVDIAKICHLAREVGAVSVVDNT 173 (384)
T ss_dssp HHHHHHHHTTTSCEEEEE-CTT-CHHHHHHHHH-----TCCSEEEEECSCT--TTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred hhhhhhhhcccccccccc-cCC-CHHHHHhhcc-----ccccEEEEecccc--ccceeccHHHHhhhhhhcCcEEEEecc
Confidence 3455555443 4444333 333 6788776543 5789999999886 3335789999998877 8999999988
Q ss_pred CC
Q 022892 198 HS 199 (290)
Q Consensus 198 Hs 199 (290)
-.
T Consensus 174 ~a 175 (384)
T d1cs1a_ 174 FL 175 (384)
T ss_dssp TT
T ss_pred cc
Confidence 75
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=84.76 E-value=4.4 Score=30.01 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC-chhHHHHHh--cCCCEEEeCCCCCCCCCCCccCCCCccCCCC
Q 022892 142 ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD-PRNLEWMRE--ANCPVVADVTHSLQQPAGKKLDGGGVASGGL 218 (290)
Q Consensus 142 tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d-L~~i~~lk~--~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~ 218 (290)
+.++..+ .+.+ .+++++|+.-.- |. .| +..+..+|+ .+.||++=+.|+.
T Consensus 36 ~~~~al~---~~~~-~~~DlvllD~~m----P~--~~G~el~~~ir~~~~~~~vivlt~~~~------------------ 87 (138)
T d1a04a2 36 NGEQGIE---LAES-LDPDLILLDLNM----PG--MNGLETLDKLREKSLSGRIVVFSVSNH------------------ 87 (138)
T ss_dssp SHHHHHH---HHHH-HCCSEEEEETTS----TT--SCHHHHHHHHHHSCCCSEEEEEECCCC------------------
T ss_pred CHHHHHH---HHHh-cCCCEEEEecCC----CC--CCHHHHHHHHHhhCCCCCEEEEEEECC------------------
Confidence 4555444 4443 368999998753 11 12 445566666 3677766466652
Q ss_pred cccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 219 RELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 219 ~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
......|..+||+| +|-|-+
T Consensus 88 ----~~~~~~a~~~Ga~~-yl~Kp~ 107 (138)
T d1a04a2 88 ----EEDVVTALKRGADG-YLLKDM 107 (138)
T ss_dssp ----HHHHHHHHHTTCSE-EEETTC
T ss_pred ----HHHHHHHHHcCCCE-EEECCC
Confidence 55667789999998 677765
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.73 E-value=8.1 Score=32.24 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=42.2
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
+++..+|+|.++. |.+.+++.|+.-. ++|+++++-. .|+.|. ..-++-+.+.+++++..++|++-
T Consensus 74 ~~~~~vi~g~~~~-s~~~~i~~a~~a~----~~Gad~v~i~--------~P~~~~-~~~~~l~~~~~~v~~~~~~pi~l 138 (296)
T d1xxxa1 74 GDRARVIAGAGTY-DTAHSIRLAKACA----AEGAHGLLVV--------TPYYSK-PPQRGLQAHFTAVADATELPMLL 138 (296)
T ss_dssp TTTSEEEEECCCS-CHHHHHHHHHHHH----HHTCSEEEEE--------CCCSSC-CCHHHHHHHHHHHHTTCSSCEEE
T ss_pred ccccceEeccccc-hhHHHHHHHHHHH----HhcCCeEEEE--------eccCCC-CCHHHHHHHHHHHHHhcCCCEEE
Confidence 4667889998863 6666666665555 4699987653 122122 23234566788888888999875
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=84.64 E-value=8.8 Score=31.13 Aligned_cols=119 Identities=9% Similarity=0.086 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHhcCCcEEEeec--CcccHHHH------hhhcceecc--cCCccCCHHHHHHHHhc------C------
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVH--ETVQCEEV------GKVADIIQI--PAFLCRQTDLLVAAAKT------G------ 130 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~--d~~~~~~l------~~~~d~~kI--gs~~~~n~~lL~~~a~~------~------ 130 (290)
..+.++|+.|++.+|+++.+... |+..+.+. .+..|++-| +.+.-.|..++.++.+. .
T Consensus 52 ~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~ 131 (213)
T d1vmaa2 52 AAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPH 131 (213)
T ss_dssp HHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCS
T ss_pred cchhHHHHHHhhhcCccccccCCCCcHHHHHHHHHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccc
Confidence 46789999999999999986433 22222111 113455544 55556666666554432 1
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCC
Q 022892 131 KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHS 199 (290)
Q Consensus 131 ~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs 199 (290)
.++++=..+. ..+++..+.......|-..+++..--....+. ..+..+.++++||.| .+.+
T Consensus 132 ~~~LVl~a~~-~~~~~~~~~~~~~~~~~~~lI~TKlDe~~~~G------~~l~~~~~~~~Pi~~-i~~G 192 (213)
T d1vmaa2 132 ETLLVIDATT-GQNGLVQAKIFKEAVNVTGIILTKLDGTAKGG------ITLAIARELGIPIKF-IGVG 192 (213)
T ss_dssp EEEEEEEGGG-HHHHHHHHHHHHHHSCCCEEEEECGGGCSCTT------HHHHHHHHHCCCEEE-EECS
T ss_pred eeEEeecccc-CcchhhhhhhhccccCCceEEEecccCCCccc------HHHHHHHHHCCCEEE-EeCC
Confidence 1334434444 58899999888888887788887654431122 233444448999988 4443
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=84.09 E-value=9.5 Score=32.11 Aligned_cols=153 Identities=17% Similarity=0.144 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCc--------cCC---H----HHHHHHHh-cCCeEEEeCCC
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFL--------CRQ---T----DLLVAAAK-TGKIINIKKGQ 139 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~--------~~n---~----~lL~~~a~-~~~PVilstG~ 139 (290)
..|++...+---.++.|++|...+..+++ .+|++-||-.. .+. . ...+++.+ .+.+.++.-=.
T Consensus 5 ~~L~~~K~~g~ki~~lTayd~~~A~~ae~agiDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmP 84 (260)
T d1o66a_ 5 NTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLP 84 (260)
T ss_dssp HHHHHHHHHTCCEEEEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECC
T ss_pred HHHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchh
Confidence 45666654433344558999999999988 69999998541 111 1 22344443 44455443221
Q ss_pred ----CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccC
Q 022892 140 ----FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 140 ----~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
..+.++..+|+..+.+.|. +.+-|+.+.. ....+..|.+.|+||+. |.=-.|... ...|+-..
T Consensus 85 f~sy~~~~~~~~~a~~~~~~~ga-davk~eg~~~--------~~~~i~~l~~~gIPV~g---HiGl~Pq~~-~~~gG~r~ 151 (260)
T d1o66a_ 85 FGAYQQSKEQAFAAAAELMAAGA-HMVKLEGGVW--------MAETTEFLQMRGIPVCA---HIGLTPQSV-FAFGGYKV 151 (260)
T ss_dssp TTSSSSCHHHHHHHHHHHHHTTC-SEEEEECSGG--------GHHHHHHHHHTTCCEEE---EEESCGGGT-TC------
T ss_pred hhhhcchhHHHHHHHHHHHHhhh-hhccccchhh--------hhHHHHHHHHcCCeeEe---ecccccchh-eecCccee
Confidence 1266888888887777775 5778886642 23567777778999854 431111100 00111111
Q ss_pred CCCc-c--cHHHHHHHHHHcCCCEEEEeee
Q 022892 216 GGLR-E--LIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 216 ~g~~-~--~~~~~a~aAva~GA~G~~IEkH 242 (290)
.|.. + .+..-+++--.+||.++++|.=
T Consensus 152 ~Gk~~e~~~l~~~a~~le~AGa~~ivlE~V 181 (260)
T d1o66a_ 152 QGRGGKAQALLNDAKAHDDAGAAVVLMECV 181 (260)
T ss_dssp -----CHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred ccccchhHHHHHHHHHHHHhhhhehhhhhc
Confidence 1211 1 1333344445689999999864
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=83.41 E-value=8.5 Score=31.87 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=43.1
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
++++-+|+|.+.. |...++++|++..+ +|++++.-.. |+.| ...-++-+...++++++.++|++-
T Consensus 70 ~~~~~vi~gv~~~-s~~~~i~~a~~a~~----~Gad~ilv~p--------P~~~-~~s~~~i~~~~~~v~~~~~~pi~i 134 (292)
T d1xkya1 70 DKRVPVIAGTGSN-NTHASIDLTKKATE----VGVDAVMLVA--------PYYN-KPSQEGMYQHFKAIAESTPLPVML 134 (292)
T ss_dssp TTSSCEEEECCCS-CHHHHHHHHHHHHH----TTCSEEEEEC--------CCSS-CCCHHHHHHHHHHHHHTCSSCEEE
T ss_pred CCCceEEEecCcc-cHHHHHHHHHHHHH----cCCCEEEECC--------CCCC-CCCHHHHHHHHHHHhccCCCcEEE
Confidence 4577888888853 67777777766555 6999877641 1212 222134466788888999999884
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.96 E-value=12 Score=31.26 Aligned_cols=179 Identities=16% Similarity=0.109 Sum_probs=111.4
Q ss_pred CCCeEEEEcc-------CCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc
Q 022892 14 AEPFFLLAGP-------NVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY 86 (290)
Q Consensus 14 ~~~~~iIAgp-------csien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~ 86 (290)
.+++-||||. +.++ .+ ..++|+ .. +.||.++-- .|-+..|+| .+..|.++++..
T Consensus 42 ~~~~~iIaEiKr~SPS~g~i~-~d-~~~~a~-~~----~~gA~aiSV-------LTd~~~F~G-----s~~dl~~v~~~~ 102 (247)
T d1a53a_ 42 RNITAIIAEYKRKSPSGLDVE-RD-PIEYSK-FM----ERYAVGLSI-------LTEEKYFNG-----SYETLRKIASSV 102 (247)
T ss_dssp TTCCCEEEEECSBCTTSCBCC-CC-HHHHHH-HH----TTTCSEEEE-------ECCCTTTCC-----CHHHHHHHHHHC
T ss_pred cCCCeEEeeEecCCCCCCccc-cC-HHHHHH-HH----HhCCCeEEE-------ecCcccccc-----chHHHHHHHhcc
Confidence 4556899986 3332 21 345553 22 368877542 233333543 467788888889
Q ss_pred CCcEEEe--ecCcccHHHHhh-hcceecccCCccCC---HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCc
Q 022892 87 DIPIVTD--VHETVQCEEVGK-VADIIQIPAFLCRQ---TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 87 Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~~n---~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~ 160 (290)
.+|++-- +.|+.++..... .+|++-+=...+.. ..|++.+-++|+-+++.-. |.+|+..|++ .|..-
T Consensus 103 ~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh---~~~El~~a~~----~~a~i 175 (247)
T d1a53a_ 103 SIPILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEIN---DENDLDIALR----IGARF 175 (247)
T ss_dssp CSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHTTTCCCEEEEC---SHHHHHHHHH----TTCSE
T ss_pred ccceeecccccChHHHHHHHHhhcchhhhhhhhccHHHHHHHHHHHHHHhhhHHhhcC---CHHHHHHHHh----CCCCe
Confidence 9999985 456666666655 58877666666643 2567777889999999987 8899998875 35433
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
|.+= +.+..+..+|+.....|.. . +..++.=| ++ .. +.-......+|++|+
T Consensus 176 IGIN----nRnL~t~~vd~~~~~~L~~~ip~~~~~IaES--GI---------------~t-----~~dv~~l~~~G~dav 229 (247)
T d1a53a_ 176 IGIN----SRDLETLEINKENQRKLISMIPSNVVKVAES--GI---------------SE-----RNEIEELRKLGVNAF 229 (247)
T ss_dssp EEEE----SBCTTTCCBCHHHHHHHHHHSCTTSEEEEES--CC---------------CC-----HHHHHHHHHTTCCEE
T ss_pred Eeee----ccChhhhhhhhhHHHHHHhhCCCCCeEEEec--CC---------------CC-----HHHHHHHHHCCCCEE
Confidence 3222 2345566788877777655 2 44444322 11 12 233334567899999
Q ss_pred EEeeeCC
Q 022892 238 FMEVHDD 244 (290)
Q Consensus 238 ~IEkH~t 244 (290)
+|-..+.
T Consensus 230 LIGeaLm 236 (247)
T d1a53a_ 230 LIGSSLM 236 (247)
T ss_dssp EECHHHH
T ss_pred EECHHHc
Confidence 9987763
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=82.90 E-value=7.1 Score=32.50 Aligned_cols=65 Identities=8% Similarity=0.105 Sum_probs=42.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.+.. |.+.++++|+...+ +|+++|... .|+.|+ +.-++-+...+++++..++|++-
T Consensus 71 ~~~~~vi~gv~~~-s~~~~iela~~a~~----~Gad~i~~~--------pP~~~~-~s~~~~~~~~~~v~~~~~~pi~i 135 (293)
T d1f74a_ 71 KDQIALIAQVGSV-NLKEAVELGKYATE----LGYDCLSAV--------TPFYYK-FSFPEIKHYYDTIIAETGSNMIV 135 (293)
T ss_dssp TTSSEEEEECCCS-CHHHHHHHHHHHHH----HTCSEEECC--------CCCSSC-CCHHHHHHHHHHHHHHHCCCEEE
T ss_pred cCccccccccccc-cHHHHHHHHHHHHH----cCCCEeecc--------Cccccc-cchHHHHHHHhcccccCCceEEE
Confidence 4667889998753 77777887776665 599987653 122122 22134456677788888998874
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=81.73 E-value=3.5 Score=33.86 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=72.7
Q ss_pred EEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcc
Q 022892 19 LLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETV 98 (290)
Q Consensus 19 iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~ 98 (290)
++.|.+++=|. +.+++.++ +|++.+.-..++ +.+.++|++.+++++--++.+.
T Consensus 66 ~~vGaGTV~~~----~~~~~a~~----aGa~FivSP~~~-------------------~~v~~~a~~~~i~~iPGv~Tps 118 (212)
T d1vhca_ 66 FLIAAGTVLTA----EQVVLAKS----SGADFVVTPGLN-------------------PKIVKLCQDLNFPITPGVNNPM 118 (212)
T ss_dssp CEEEEESCCSH----HHHHHHHH----HTCSEEECSSCC-------------------HHHHHHHHHTTCCEECEECSHH
T ss_pred ceEeeeecccH----HHHHHHHh----hCCcEEECCCCC-------------------HHHHHHHHhcCCCccCCcCCHH
Confidence 45566666444 44555555 488877654333 3578899999999999999999
Q ss_pred cHHHHhh-hcceecccC-CccCCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 022892 99 QCEEVGK-VADIIQIPA-FLCRQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGN 158 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs-~~~~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn 158 (290)
++....+ .++++|+=- ..+.-..+|+.+..- +.|++ -||-- +++++ -+++ +.|+
T Consensus 119 Ei~~A~~~G~~~vK~FPA~~~gG~~~lkal~~p~p~~~~~-ptGGV-~~~N~---~~yl-~~g~ 176 (212)
T d1vhca_ 119 AIEIALEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIM-PTGGI-GLHNI---RDYL-AIPN 176 (212)
T ss_dssp HHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTTTTCEEE-EBSSC-CTTTH---HHHH-TSTT
T ss_pred HHHHHHHCCCCEEEEccccccchHHHHHHHhccccCCeEE-ecCCC-CHHHH---HHHH-hCCC
Confidence 9988877 699999954 445567888888753 56665 55543 44433 3455 3454
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=81.61 E-value=13 Score=30.84 Aligned_cols=204 Identities=14% Similarity=0.045 Sum_probs=118.9
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEEeecCcccHHHHhh
Q 022892 27 ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVTDVHETVQCEEVGK 105 (290)
Q Consensus 27 en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s~~~d~~~~~~l~~ 105 (290)
+|.+..++.|+++++. ||+++=-.. . .....-++.+.++.....+ .++|+..+-+.++.++...+
T Consensus 22 ~d~~~~~~~A~~m~~~----GAdiIDIg~---------g-~~~~~e~e~~~~vi~~l~~~~~vpiSIDT~~~~v~~aal~ 87 (262)
T d1f6ya_ 22 RDPAPVQEWARRQEEG----GARALDLNV---------G-PAVQDKVSAMEWLVEVTQEVSNLTLCLDSTNIKAIEAGLK 87 (262)
T ss_dssp TCHHHHHHHHHHHHHH----TCSEEEEBC---------C-----CHHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC----CCCEEEeCC---------C-CCCCCHHHHHHHHHHHHHHhhcCCccccCCccHHHHHHHH
Confidence 3677888899999885 999876531 0 0000113456666655544 69999999999988876544
Q ss_pred ---hcceecccCCccCC-HHHHHHHHhcCCeEEEeCC----CCCCHHHHHHHHH----HHHHcCC-CcEEEEeecCCCCC
Q 022892 106 ---VADIIQIPAFLCRQ-TDLLVAAAKTGKIINIKKG----QFCASSVMVNSAE----KVRLAGN-PNVMVCERGTMFGY 172 (290)
Q Consensus 106 ---~~d~~kIgs~~~~n-~~lL~~~a~~~~PVilstG----~~~tl~e~~~Ave----~i~~~Gn-~~i~L~~~gs~~~y 172 (290)
.++++===|..-.. ..++..+.+.+.+++..++ +..++++.....+ .+.+.|- ++-+++..|.-|.-
T Consensus 88 ~~~Ga~iINdIsg~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~Ii~DPgi~~~~ 167 (262)
T d1f6ya_ 88 KCKNRAMINSTNAEREKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPAN 167 (262)
T ss_dssp HCSSCEEEEEECSCHHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCTT
T ss_pred hhcccceeechhcccchHHHHHHHHhcCCceEEEEecCCcccccCHHHHHHHHHHHHHHHHHcCCCHHHhhccceeeecc
Confidence 45554332332222 2344556788889888765 4446666655543 4555663 44567888864321
Q ss_pred --CC-CCCCchhHHHHHh---cCCCEEEeCCCCCCCCCCCccCCCCccCCC--CcccHHHH-HHHHHHcCCCEEEEeeeC
Q 022892 173 --ND-LIVDPRNLEWMRE---ANCPVVADVTHSLQQPAGKKLDGGGVASGG--LRELIPCI-ARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 173 --~~-~~~dL~~i~~lk~---~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g--~~~~~~~~-a~aAva~GA~G~~IEkH~ 243 (290)
.. ...+|..+..+++ +++|+.+-.|. .|.| .|+.+... ...|++.|.++-++-.|-
T Consensus 168 ~~~~~~~~~le~l~~l~~~~~~g~~~l~G~Sn---------------~Sfg~~~r~~ln~~~l~~a~~aGl~~aIv~~~d 232 (262)
T d1f6ya_ 168 VAQDHAPEVLKTLQQIKMLADPAPKTVLGLSN---------------VSQNCQNRPLINRTFLAMAMACGLMSAIADACD 232 (262)
T ss_dssp TCTTHHHHHHHHHHHHHTCCSSCCEEEEEGGG---------------GGTTCSSHHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred ccchHHHHHHHHHHHHHHHHhhccceeeeeec---------------cccccchhhHHHHHHHHHHHHccCCccccCcch
Confidence 11 1234566666765 46787552222 1122 23333332 335788898877776662
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 244 DPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 244 t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
.++++.++..+..+|.
T Consensus 233 ------------------~~~~~~~~~~dal~~~ 248 (262)
T d1f6ya_ 233 ------------------EALIETAATAEILLNQ 248 (262)
T ss_dssp ------------------HHHHHHHHHHHHHTTS
T ss_pred ------------------HHHHHHHHHHHHHhCC
Confidence 3556767766666665
|
| >d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=81.61 E-value=2 Score=36.87 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhc--CCcEEEeecCcccHHHHhh---hcceecccCCcc-----------CCHHHHHHHHhcCCeEEEeC
Q 022892 74 EGLKILEKVKIAY--DIPIVTDVHETVQCEEVGK---VADIIQIPAFLC-----------RQTDLLVAAAKTGKIINIKK 137 (290)
Q Consensus 74 ~~l~~L~~~~~~~--Gi~~~s~~~d~~~~~~l~~---~~d~~kIgs~~~-----------~n~~lL~~~a~~~~PVilst 137 (290)
+.+..++++.++. ++.+++-+-....++-+.+ ..|.+-|+=+++ -|..+++.+-..+|||++.|
T Consensus 135 ~DI~~~r~~l~~~g~~~~IiaKIE~~~al~NldeIi~~sDgIMIaRGDLg~ei~~e~vp~~Qk~Ii~~~~~~~kpvivAt 214 (282)
T d2g50a2 135 ADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFLAQKMIIGRCNRAGKPVICAT 214 (282)
T ss_dssp HHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHcCCCceEEEeecchhhhhcchhhccccceeeeeccccccccCHHHhHHHHHHHHHHHHhcCCcEEEec
Confidence 6678888888765 5778998888888877766 377777764444 23455666677899999876
Q ss_pred CC--------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHH
Q 022892 138 GQ--------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMR 186 (290)
Q Consensus 138 G~--------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk 186 (290)
.+ ..|-.|+-.....+. .|-+-++|..-+..-.||. .++.+|+
T Consensus 215 ~~leSMi~~~~pTRaEv~Dianav~-~G~D~imLs~ETa~G~~p~-----~~V~~l~ 265 (282)
T d2g50a2 215 QMLESMIKKPRPTRAEGSDVANAVL-DGADCIMLSGETAKGDYPL-----EAVRMQH 265 (282)
T ss_dssp STTGGGGTCSSCCHHHHHHHHHHHH-HTCSEEEESHHHHTCSCHH-----HHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHH-hCCCEEEECcccccCCCHH-----HHHHHHH
Confidence 55 346788888777766 4777777764443324664 4555554
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.91 E-value=3.7 Score=34.56 Aligned_cols=69 Identities=25% Similarity=0.320 Sum_probs=48.1
Q ss_pred HHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 022892 151 EKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 229 (290)
Q Consensus 151 e~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aA 229 (290)
+.+...|. -+++--|+--++..-..|...+..+++ ..+||++|.-=+. +.=+..|
T Consensus 142 k~le~~Gc--~~vMplgsPIGsg~Gi~n~~~l~~i~~~~~vpvivdAGIg~----------------------psdaa~A 197 (243)
T d1wv2a_ 142 RQLAEIGC--IAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGT----------------------ASDAAIA 197 (243)
T ss_dssp HHHHHSCC--SEEEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCS----------------------HHHHHHH
T ss_pred hHHHHcCc--eeeeecccccccccccccHHHHHhccccCCcceEeecccCC----------------------HHHHHHH
Confidence 44555665 355555553345555678888888877 7899998755432 5556678
Q ss_pred HHcCCCEEEEeeeC
Q 022892 230 IAVGVDGVFMEVHD 243 (290)
Q Consensus 230 va~GA~G~~IEkH~ 243 (290)
..+|+||+++-+-.
T Consensus 198 MElG~dgVLvnsaI 211 (243)
T d1wv2a_ 198 MELGCEAVLMNTAI 211 (243)
T ss_dssp HHHTCSEEEESHHH
T ss_pred HHccCCEEEechHh
Confidence 99999999998876
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=80.72 E-value=2.4 Score=35.86 Aligned_cols=108 Identities=22% Similarity=0.251 Sum_probs=64.3
Q ss_pred CCHHHHHHH---HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEE
Q 022892 118 RQTDLLVAA---AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVV 193 (290)
Q Consensus 118 ~n~~lL~~~---a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~ 193 (290)
.+..+|+++ .+-|--|+-=+... +- .+..+...|..-+ +-=|+--+...--.|...+..+++ .++||+
T Consensus 110 D~~etl~Aae~Lv~eGF~VlpY~~~D--~v----~ak~Le~~Gc~av--MPlgsPIGSg~Gl~n~~~l~~i~~~~~vPvI 181 (251)
T d1xm3a_ 110 DPVETLKASEQLLEEGFIVLPYTSDD--VV----LARKLEELGVHAI--MPGASPIGSGQGILNPLNLSFIIEQAKVPVI 181 (251)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECSC--HH----HHHHHHHHTCSCB--EECSSSTTCCCCCSCHHHHHHHHHHCSSCBE
T ss_pred CHHHHHHHHHHHHhCCcEEEEecCCC--HH----HHHHHHHcCChhH--HHhhhhhhcCCCcCChHHHHHHHhcCCccEE
Confidence 455555543 34455555444433 22 2334555676433 333331123333568888888887 899999
Q ss_pred EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHH
Q 022892 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEEL 264 (290)
Q Consensus 194 ~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~l 264 (290)
+|.-=+. +.-+..|..+|+||+++-+-. ..+-+|-.+++-
T Consensus 182 vDAGIG~----------------------pSdAa~AMElG~daVLvNTAI---------A~a~dPv~MA~A 221 (251)
T d1xm3a_ 182 VDAGIGS----------------------PKDAAYAMELGADGVLLNTAV---------SGADDPVKMARA 221 (251)
T ss_dssp EESCCCS----------------------HHHHHHHHHTTCSEEEESHHH---------HTSSSHHHHHHH
T ss_pred EecCCCC----------------------HHHHHHHHHccCCEEEechhh---------hcCCCHHHHHHH
Confidence 9855432 666778899999999998875 234466655443
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.28 E-value=15 Score=30.80 Aligned_cols=110 Identities=10% Similarity=0.109 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCC--------------ccCC-HHHHHHHHh-cCCeEEEeCC
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAF--------------LCRQ-TDLLVAAAK-TGKIINIKKG 138 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~--------------~~~n-~~lL~~~a~-~~~PVilstG 138 (290)
+..|++..+.---.++.|.+|...+..+++ .+|++-||.. ++.+ ....+.+.+ .+.+.++.--
T Consensus 6 i~~l~~~K~~g~ki~~lTaYD~~~A~~~~~agiDiiLVGDSlgmv~~G~~~T~~Vt~d~m~~H~~aV~rga~~~~iv~Dm 85 (262)
T d1oy0a_ 6 THHLQRWKADGHKWAMLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADL 85 (262)
T ss_dssp HHHHHHHHHHTCCEEEEECCSHHHHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEEC
T ss_pred HHHHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEEcCchhhhhcCCCCcceeeHHHHHHHHHHHHhccccceeEecc
Confidence 455666655544556679999999999988 6999999843 1111 122344544 4445554332
Q ss_pred CC----CCHHHHHH-HHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEE
Q 022892 139 QF----CASSVMVN-SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 194 (290)
Q Consensus 139 ~~----~tl~e~~~-Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~ 194 (290)
.+ .+.++... |...++..| -+.+=|++|.. ....|..|.+.|+||+.
T Consensus 86 Pf~s~~~s~~~a~~nA~r~~~~~g-a~avkleg~~~--------~~~~I~~L~~~gIPV~g 137 (262)
T d1oy0a_ 86 PFGSYEAGPTAALAAATRFLKDGG-AHAVKLEGGER--------VAEQIACLTAAGIPVMA 137 (262)
T ss_dssp CTTSSTTCHHHHHHHHHHHHHTTC-CSEEEEEBSGG--------GHHHHHHHHHHTCCEEE
T ss_pred hhhhcccchHHHHHHHHHHHhccc-cceeeechhhh--------hHHHHHHHHhcCCceEE
Confidence 22 24555544 455555444 57888888742 23567777778999854
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.09 E-value=1.1 Score=38.28 Aligned_cols=109 Identities=14% Similarity=0.143 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHhc--CCcEEEeecCcccHHHHhh---hcceecccCCcc-----------CCHHHHHHHHhcCCeEEEe
Q 022892 73 VEGLKILEKVKIAY--DIPIVTDVHETVQCEEVGK---VADIIQIPAFLC-----------RQTDLLVAAAKTGKIINIK 136 (290)
Q Consensus 73 ~~~l~~L~~~~~~~--Gi~~~s~~~d~~~~~~l~~---~~d~~kIgs~~~-----------~n~~lL~~~a~~~~PVils 136 (290)
.+.+..++++..+. .+.+++-+-..+.++-+.+ ..|.+-|+=+++ .|-.+++.+-..+|||++.
T Consensus 117 ~~Di~~~r~~l~~~~~~~~IiaKIE~~~al~NldeIi~~sDgimIaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvivA 196 (265)
T d1a3xa2 117 ANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICA 196 (265)
T ss_dssp HHHHHHHHHHHCGGGTTSCCEEEECSHHHHTTHHHHHHHCSEEEEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeccchHHHhChHHHHhhcceeEEEccchhhhccHHHHHHHHHHHHHHHHHcCCcEEeh
Confidence 36788888888654 5889998888887776665 588888887775 3455666777789999999
Q ss_pred CCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh
Q 022892 137 KGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE 187 (290)
Q Consensus 137 tG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~ 187 (290)
|-|- .|-.|+-..+..+. .|-+-++|..-+..-.||. .++.+|++
T Consensus 197 Tq~LeSM~~~~~PTRAEv~Dvanav~-dG~D~vmLs~ETA~G~~Pv-----~~V~~~~~ 249 (265)
T d1a3xa2 197 TQMLESMTYNPRPTRAEVSDVGNAIL-DGADCVMLSGETAKGNYPI-----NAVTTMAE 249 (265)
T ss_dssp SSSSGGGGTCSSCCHHHHHHHHHHHH-TTCSEECCSHHHHSCSCHH-----HHHHHHHH
T ss_pred hhhhhhhccCCCCcHHHHHHHHHHHH-hCCCEEEEccccccCCCHH-----HHHHHHHH
Confidence 9763 35577777777665 5666666644333223764 45555543
|