Citrus Sinensis ID: 022909
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | 2.2.26 [Sep-21-2011] | |||||||
| F4I907 | 358 | Glyoxylate/succinic semia | yes | no | 0.772 | 0.625 | 0.711 | 6e-88 | |
| Q9LSV0 | 289 | Glyoxylate/succinic semia | no | no | 0.610 | 0.612 | 0.587 | 1e-52 | |
| Q5ZLS7 | 553 | Putative oxidoreductase G | yes | no | 0.786 | 0.412 | 0.422 | 2e-46 | |
| Q49A26 | 553 | Putative oxidoreductase G | yes | no | 0.734 | 0.385 | 0.450 | 3e-46 | |
| A4FUF0 | 553 | Putative oxidoreductase G | yes | no | 0.682 | 0.358 | 0.464 | 3e-46 | |
| Q5RKH0 | 552 | Putative oxidoreductase G | yes | no | 0.786 | 0.413 | 0.422 | 3e-46 | |
| Q5R7T2 | 553 | Putative oxidoreductase G | yes | no | 0.682 | 0.358 | 0.454 | 9e-45 | |
| Q562D5 | 534 | Putative oxidoreductase G | yes | no | 0.682 | 0.370 | 0.449 | 1e-43 | |
| Q922P9 | 546 | Putative oxidoreductase G | yes | no | 0.662 | 0.351 | 0.449 | 4e-42 | |
| Q5RKN4 | 462 | Putative oxidoreductase G | yes | no | 0.682 | 0.428 | 0.432 | 4e-42 |
| >sp|F4I907|GLYR2_ARATH Glyoxylate/succinic semialdehyde reductase 2, chloroplastic OS=Arabidopsis thaliana GN=GLYR2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 324 bits (830), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 160/225 (71%), Positives = 184/225 (81%), Gaps = 1/225 (0%)
Query: 26 SFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPG-RIGFLGMGIMGT 84
S CP++P FR KPI+ +KP L+++V+SS + + DEL IGFLGMGIMG+
Sbjct: 20 SICPRIPLRFRPKPISPFLSKPQICLAYRVYSSLQSTTPSTRDELGTVSIGFLGMGIMGS 79
Query: 85 PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144
PMAQNL+KAGCDVTVWNRTKSKCDPL+ LGAKY+ SP+EV A+CD+TFAMLADPESA+DV
Sbjct: 80 PMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLTFAMLADPESAIDV 139
Query: 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLI 204
ACGK+GA G+ GKGYVDVSTVD +S LI+ IK TGA FLEAPVSGSKKPAEDGQLI
Sbjct: 140 ACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPVSGSKKPAEDGQLI 199
Query: 205 FLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
FL AGDK LY AP LDIMGKS+FYLG+VGNGAAMKLVVNMIMG
Sbjct: 200 FLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMIMG 244
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Catalyzes the NADPH-dependent reduction of glyoxylate to glycolate as well as succinic semialdehyde (SSA) to gamma-hydroxybutyrate in vitro. May functions in redox homeostasis and play a role in oxidative stress tolerance by detoxifying glyoxylate and SSA generated in glycolate metabolism and GABA metabolism, respectively. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1EC: 1 |
| >sp|Q9LSV0|GLYR1_ARATH Glyoxylate/succinic semialdehyde reductase 1 OS=Arabidopsis thaliana GN=GLYR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/177 (58%), Positives = 121/177 (68%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+GFLG+GIMG M+ NLLK G VTVWNRT SKCD L+ GA SP EV C T
Sbjct: 2 EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 61
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
AML+DP +A+ V K G + GKGY+D+STVD +TS IN I G F+E PVS
Sbjct: 62 AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVS 121
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
GSKKPAEDGQLI LAAGDK+L+ P D++GK FYLG VGNGA MKL+VNMIMG
Sbjct: 122 GSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMG 178
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Catalyzes the NADPH-dependent reduction of glyoxylate to glycolate as well as succinic semialdehyde (SSA) to gamma-hydroxybutyrate in vitro. May functions in redox homeostasis and play a role in oxidative stress tolerance by detoxifying glyoxylate and SSA generated in glycolate metabolism and GABA metabolism, respectively. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 1 |
| >sp|Q5ZLS7|GLYR1_CHICK Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 138/239 (57%), Gaps = 11/239 (4%)
Query: 11 HRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADEL 70
H FL S T +VC Q L S + ++ +T V+
Sbjct: 218 HHFLLSQTEKPAVCY-----------QAITKKLKVCEEETGSTSIQAADSTAVNGSITPT 266
Query: 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 130
+IGFLG+G+MG+ + NLLK G VTVWNRT KCD I GA+ +P EV ++CD+
Sbjct: 267 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDI 326
Query: 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190
TFA ++DP++A D+ G G G+ PGK YVD+STVD DT + I + G FLEAP
Sbjct: 327 TFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAP 386
Query: 191 VSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
VSG+++ + DG L+ LAAGD+ LY + MGK+ F+LG+VGN A M L+VNM+ G
Sbjct: 387 VSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQG 445
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May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of MAPK14 and specifically regulating MAPK14 signaling. Gallus gallus (taxid: 9031) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q49A26|GLYR1_HUMAN Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 132/213 (61%)
Query: 52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
S + ++ +T V+ +IGFLG+G+MG+ + NLLK G VTVWNRT KCD I
Sbjct: 248 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 307
Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
GA+ +P EV ++CD+TFA ++DP++A D+ G G G+ PGK YVD+STVD DT
Sbjct: 308 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 367
Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
+ I + G FLEAPVSG+++ + DG L+ LAAGD+ LY + MGK+ F+L
Sbjct: 368 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427
Query: 232 GDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFV 264
G+VGN A M L+VNM+ G LTL V
Sbjct: 428 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAHV 460
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May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3). Homo sapiens (taxid: 9606) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|A4FUF0|GLYR1_BOVIN Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 128/198 (64%)
Query: 52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
S + ++ +T V+ +IGFLG+G+MG+ + NLLK G VTVWNRT KCD I
Sbjct: 248 STSIQAADSTAVNGSVTPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 307
Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
GA+ +P EV ++CD+TFA ++DP++A D+ G G G+ PGK YVD+STVD DT
Sbjct: 308 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 367
Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
+ I + G FLEAPVSG+++ + DG L+ LAAGD+ LY + MGK+ F+L
Sbjct: 368 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427
Query: 232 GDVGNGAAMKLVVNMIMG 249
G+VGN A M L+VNM+ G
Sbjct: 428 GEVGNAAKMMLIVNMVQG 445
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May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3). Bos taurus (taxid: 9913) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q5RKH0|GLYR1_RAT Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 138/239 (57%), Gaps = 11/239 (4%)
Query: 11 HRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADEL 70
H FL S T +VC Q L S + ++ +T V+
Sbjct: 217 HHFLLSQTEKPAVCY-----------QAITKKLKICEEETGSTSIQAADSTAVNGSITPT 265
Query: 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 130
+IGFLG+G+MG+ + NLLK G VTVWNRT KCD I GA+ +P EV ++CD+
Sbjct: 266 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDI 325
Query: 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190
TFA ++DP++A D+ G G G+ PGK YVD+STVD DT + I + G FLEAP
Sbjct: 326 TFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAP 385
Query: 191 VSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
VSG+++ + DG L+ LAAGD+ LY + MGK+ F+LG+VGN A M L+VNM+ G
Sbjct: 386 VSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQG 444
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May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3). Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q5R7T2|GLYR1_PONAB Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 90/198 (45%), Positives = 127/198 (64%)
Query: 52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
S + ++ +T V+ +IGFLG+G+MG+ + NLLK G VTVW+RT KCD I
Sbjct: 248 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWDRTAEKCDLFI 307
Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
GA+ +P EV ++CD+TFA ++DP++A D+ G G G+ P K YVD+STVD DT
Sbjct: 308 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTVDADT 367
Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
+ I + G FLEAPVSG+++ + DG L+ LAAGD+ LY + MGK+ F+L
Sbjct: 368 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427
Query: 232 GDVGNGAAMKLVVNMIMG 249
G+VGN A M L+VNM+ G
Sbjct: 428 GEVGNAAKMMLIVNMVQG 445
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May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3). Pongo abelii (taxid: 9601) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q562D5|GLYR1_XENTR Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 127/198 (64%)
Query: 52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
S + ++ +T ++ +IGFLG+G+MG+ + NLLK G VTVWNRT KCD I
Sbjct: 229 STSIQAADSTAINGNIIPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 288
Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
GA +P EV ++CD+TFA +ADP++A D+ G G G+ PGK YVD+STVD +T
Sbjct: 289 QEGAHMGRTPAEVVSTCDITFACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPET 348
Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
+ I + G FLEAPVSG+++ + DG L+ LAAGD+ +Y + MGK+ F+L
Sbjct: 349 VAELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFL 408
Query: 232 GDVGNGAAMKLVVNMIMG 249
G+VGN A M L++NM+ G
Sbjct: 409 GEVGNAARMMLILNMVQG 426
|
May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling. Xenopus tropicalis (taxid: 8364) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q922P9|GLYR1_MOUSE Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 125/198 (63%), Gaps = 6/198 (3%)
Query: 52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
S + ++ +T V+ +IGFLG+G+MG+ + NLLK G VTVWNRT K
Sbjct: 247 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEK----- 301
Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
GA+ +P EV ++CD+TFA ++DP++A D+ G G G+ PGK YVD+STVD DT
Sbjct: 302 -EGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 360
Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
+ I + G FLEAPVSG+++ + DG L+ LAAGD+ LY + MGK+ F+L
Sbjct: 361 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 420
Query: 232 GDVGNGAAMKLVVNMIMG 249
G+VGN A M L+VNM+ G
Sbjct: 421 GEVGNAAKMMLIVNMVQG 438
|
May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3). Mus musculus (taxid: 10090) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q5RKN4|GLYR1_DANRE Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 128/199 (64%), Gaps = 1/199 (0%)
Query: 52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
S + ++ +T ++ RIGFLG+G+MG+ + NLLK G VTVWNRT KCD I
Sbjct: 156 STSIQAADSTAINGSITPTDKRIGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFI 215
Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
GA+ +P EV + CD+TF+ ++DP++A D+ G G G+ PGK YV++STVD +T
Sbjct: 216 QEGARLGRTPAEVVSMCDITFSCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPET 275
Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
++ I + G FLEAPVSGS++ + DG L+ +AAGD+S+Y + MGK+ F++
Sbjct: 276 ITELSQVITSRGGRFLEAPVSGSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFI 335
Query: 232 -GDVGNGAAMKLVVNMIMG 249
G+ GN A M L++NM+ G
Sbjct: 336 AGEAGNAARMMLILNMVQG 354
|
May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling. Danio rerio (taxid: 7955) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | ||||||
| 449458161 | 356 | PREDICTED: putative oxidoreductase GLYR1 | 0.920 | 0.75 | 0.736 | 1e-104 | |
| 255560761 | 348 | 3-hydroxyisobutyrate dehydrogenase, puta | 0.893 | 0.744 | 0.732 | 1e-103 | |
| 225442309 | 365 | PREDICTED: putative oxidoreductase GLYR1 | 0.913 | 0.726 | 0.706 | 1e-100 | |
| 297743096 | 343 | unnamed protein product [Vitis vinifera] | 0.855 | 0.723 | 0.733 | 2e-99 | |
| 350538543 | 363 | succinic semialdehyde reductase isofom2 | 0.782 | 0.625 | 0.747 | 3e-95 | |
| 356550426 | 333 | PREDICTED: putative oxidoreductase GLYR1 | 0.703 | 0.612 | 0.799 | 2e-90 | |
| 357454619 | 339 | hypothetical protein MTR_2g099910 [Medic | 0.793 | 0.678 | 0.693 | 4e-89 | |
| 124359345 | 332 | Hydroxyacid dehydrogenase/reductase; 6-p | 0.793 | 0.692 | 0.693 | 4e-89 | |
| 297850160 | 341 | hypothetical protein ARALYDRAFT_471975 [ | 0.789 | 0.671 | 0.708 | 1e-88 | |
| 217073952 | 242 | unknown [Medicago truncatula] | 0.803 | 0.962 | 0.685 | 2e-88 |
| >gi|449458161|ref|XP_004146816.1| PREDICTED: putative oxidoreductase GLYR1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust.
Identities = 201/273 (73%), Positives = 218/273 (79%), Gaps = 6/273 (2%)
Query: 1 MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQA 60
MT LV++ YSH LSS+ AMS SSFCP LP +F +PI PTKP F LSFK FS QA
Sbjct: 1 MTFLVRAPYSHH-LSSTAIAMS--SSFCPHLPLHFGTRPIFYFPTKPSFSLSFKPFSVQA 57
Query: 61 TGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS 120
T S+ +EL R+GFLG+GIMGTPMAQNL+K+GCDVTVWNRTKSKCDPLI+LGAKYQ S
Sbjct: 58 TNASSGKEEL--RVGFLGLGIMGTPMAQNLIKSGCDVTVWNRTKSKCDPLINLGAKYQSS 115
Query: 121 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 180
P EVAASCDVTFAMLADP SA++VACG++GAASGM PGKGYVDVSTVD TSKLI+ IK
Sbjct: 116 PQEVAASCDVTFAMLADPNSALEVACGENGAASGMSPGKGYVDVSTVDDTTSKLISARIK 175
Query: 181 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM 240
TGA FLEAPVSGSKKPAEDGQLIFL AGDKSLY TVAP LDIMGKSRFYLGDVGNGAAM
Sbjct: 176 DTGALFLEAPVSGSKKPAEDGQLIFLTAGDKSLYETVAPFLDIMGKSRFYLGDVGNGAAM 235
Query: 241 KLVVNMIMGR-SCTFSYSFLTLEFVDFLINTVT 272
KLVVNMIMG FS L E V N V
Sbjct: 236 KLVVNMIMGSMMAAFSEGLLLSEKVGLDPNDVV 268
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560761|ref|XP_002521394.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] gi|223539472|gb|EEF41062.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/273 (73%), Positives = 216/273 (79%), Gaps = 14/273 (5%)
Query: 1 MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQA 60
MTLLVK + SH LS+ +CSSFCPQLPS+ R PI+S T+ SFK FS A
Sbjct: 1 MTLLVKINNSHSLLST------MCSSFCPQLPSHLRAIPISSFLTRQ----SFKAFSVSA 50
Query: 61 TGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS 120
S +AD R+GFLGMGIMGTPM QNL+KAGCDVTVWNRTKSKCDPLISLGAKY+PS
Sbjct: 51 ---SVKADGSSTRVGFLGMGIMGTPMTQNLIKAGCDVTVWNRTKSKCDPLISLGAKYRPS 107
Query: 121 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 180
P+EVAA+ DVTFAMLADPESA++VACGK+GAA GMGPGKGYVDVSTVDG TSKLI GHIK
Sbjct: 108 PEEVAAASDVTFAMLADPESAVEVACGKNGAAGGMGPGKGYVDVSTVDGGTSKLIGGHIK 167
Query: 181 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM 240
ATGASFLEAPVSGSKKPAEDGQLIFL AGDK LY VAP LDIMGKSRFYLGDVGNGAAM
Sbjct: 168 ATGASFLEAPVSGSKKPAEDGQLIFLTAGDKPLYEIVAPFLDIMGKSRFYLGDVGNGAAM 227
Query: 241 KLVVNMIMGR-SCTFSYSFLTLEFVDFLINTVT 272
KLVVNMIMG TFS L E V N +
Sbjct: 228 KLVVNMIMGSMMATFSEGILLGEKVGLDPNVIV 260
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442309|ref|XP_002280297.1| PREDICTED: putative oxidoreductase GLYR1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 197/279 (70%), Positives = 222/279 (79%), Gaps = 14/279 (5%)
Query: 4 LVKSSYSHRFLSSSTPA---MSVCSSFCP-QLPSYFR-QKPINSLPTKPLFPLSFKVFSS 58
LVKS + L+ S A M++CSSFCP Q+P++FR PI S KP SFK FSS
Sbjct: 3 LVKSHCCYNLLNPSNTASLAMAMCSSFCPPQVPNHFRGTTPIPSFLPKPP---SFKAFSS 59
Query: 59 QATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ 118
Q T ++ DE P R+GFLG+GIMG+PMAQNL+K+GCDVTVWNRTKSKCDPLISLGAKY+
Sbjct: 60 Q-TATASTKDEFPARVGFLGLGIMGSPMAQNLIKSGCDVTVWNRTKSKCDPLISLGAKYK 118
Query: 119 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH 178
SP+EVAASCDVTFAMLADPESA+DVACGKHGAASG+GPGKGYVDVSTVDG TSKLI H
Sbjct: 119 SSPEEVAASCDVTFAMLADPESAVDVACGKHGAASGIGPGKGYVDVSTVDGATSKLIGEH 178
Query: 179 IKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGA 238
IKATGA FLEAPVSGSKKPAEDGQLIFL GDKSLY TVAPLLDIMGKSRF+LG VGNGA
Sbjct: 179 IKATGALFLEAPVSGSKKPAEDGQLIFLTGGDKSLYETVAPLLDIMGKSRFFLGSVGNGA 238
Query: 239 AMKLVVNMIMGR-SCTFSYSFLTLEFV----DFLINTVT 272
AMKLVVNM+MG +FS L E V D ++ ++
Sbjct: 239 AMKLVVNMVMGSMMASFSEGLLLGEKVGLDPDVIVEVIS 277
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743096|emb|CBI35963.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 190/259 (73%), Positives = 213/259 (82%), Gaps = 11/259 (4%)
Query: 21 MSVCSSFCP-QLPSYFR-QKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLG 78
M++CSSFCP Q+P++FR PI S KP SFK FSSQ T ++ DE P R+GFLG
Sbjct: 1 MAMCSSFCPPQVPNHFRGTTPIPSFLPKPP---SFKAFSSQ-TATASTKDEFPARVGFLG 56
Query: 79 MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP 138
+GIMG+PMAQNL+K+GCDVTVWNRTKSKCDPLISLGAKY+ SP+EVAASCDVTFAMLADP
Sbjct: 57 LGIMGSPMAQNLIKSGCDVTVWNRTKSKCDPLISLGAKYKSSPEEVAASCDVTFAMLADP 116
Query: 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198
ESA+DVACGKHGAASG+GPGKGYVDVSTVDG TSKLI HIKATGA FLEAPVSGSKKPA
Sbjct: 117 ESAVDVACGKHGAASGIGPGKGYVDVSTVDGATSKLIGEHIKATGALFLEAPVSGSKKPA 176
Query: 199 EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGR-SCTFSYS 257
EDGQLIFL GDKSLY TVAPLLDIMGKSRF+LG VGNGAAMKLVVNM+MG +FS
Sbjct: 177 EDGQLIFLTGGDKSLYETVAPLLDIMGKSRFFLGSVGNGAAMKLVVNMVMGSMMASFSEG 236
Query: 258 FLTLEFV----DFLINTVT 272
L E V D ++ ++
Sbjct: 237 LLLGEKVGLDPDVIVEVIS 255
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350538543|ref|NP_001233836.1| succinic semialdehyde reductase isofom2 [Solanum lycopersicum] gi|171854591|dbj|BAG16486.1| succinic semialdehyde reductase isofom2 [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 172/230 (74%), Positives = 197/230 (85%), Gaps = 3/230 (1%)
Query: 21 MSVCSSFCPQLPSYFR-QKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGM 79
M++CS+FCP+L + +K ++ P K F ++ K FSSQ + + +AD+LP IGFLG+
Sbjct: 1 MAMCSTFCPRLSFHLNCKKSLSLFPVKHRFFVTIKAFSSQTS--APKADDLPASIGFLGL 58
Query: 80 GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE 139
GIMG PMAQNL+KAGCDVTVWNRTKSKC+PLISLGAKY+ SP+EVAASCDVTFAMLADPE
Sbjct: 59 GIMGNPMAQNLIKAGCDVTVWNRTKSKCEPLISLGAKYKSSPEEVAASCDVTFAMLADPE 118
Query: 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE 199
SA DVACGK+GAA GMGPGKGYVD STVDG+TSKLI HI+ATGA FLEAPVSGSKKPAE
Sbjct: 119 SAADVACGKYGAAKGMGPGKGYVDASTVDGETSKLICEHIRATGAHFLEAPVSGSKKPAE 178
Query: 200 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
DGQLIFL AGD LY+ APLLDIMGKSRFYLG+VGNGAAMKLVVNM+MG
Sbjct: 179 DGQLIFLTAGDSVLYDKAAPLLDIMGKSRFYLGEVGNGAAMKLVVNMVMG 228
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550426|ref|XP_003543588.1| PREDICTED: putative oxidoreductase GLYR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 167/209 (79%), Positives = 182/209 (87%), Gaps = 5/209 (2%)
Query: 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASC 128
E P RIGFLG+GIMG+PMA NLLKAG D+TVWNRTKSKCDPLISLGAKY+PSP+EVAASC
Sbjct: 37 EPPARIGFLGLGIMGSPMAHNLLKAGVDLTVWNRTKSKCDPLISLGAKYKPSPEEVAASC 96
Query: 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188
DVTFAMLADP+SA+DVACGKHGAA+GMGPGKGYVDVSTVDGDTSKLINGH+K+TGA FLE
Sbjct: 97 DVTFAMLADPQSAVDVACGKHGAANGMGPGKGYVDVSTVDGDTSKLINGHMKSTGALFLE 156
Query: 189 APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM 248
APVSGSKKPAEDGQLIFL AGDK+LY V LLDIMGKS+FYLGDVGNGAAMKLVVNMIM
Sbjct: 157 APVSGSKKPAEDGQLIFLTAGDKNLYEAVGSLLDIMGKSKFYLGDVGNGAAMKLVVNMIM 216
Query: 249 GR-SCTFSYSFLTLEFV----DFLINTVT 272
G +FS L E V D L+ V+
Sbjct: 217 GSMMASFSEGLLLSEKVGLDPDVLVQVVS 245
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357454619|ref|XP_003597590.1| hypothetical protein MTR_2g099910 [Medicago truncatula] gi|355486638|gb|AES67841.1| hypothetical protein MTR_2g099910 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 333 bits (855), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 172/248 (69%), Positives = 191/248 (77%), Gaps = 18/248 (7%)
Query: 24 CSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSA------EADELPGRIGFL 77
CS F + S F NS S + VSA + + P RIGFL
Sbjct: 3 CSQFATTMRSAFSLHHFNS-----------PRLSRHVSNVSASLQPQGQGTDTPPRIGFL 51
Query: 78 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD 137
G+GIMGTPMA NL+KAG D+TVWNRTKSKCDPLISLGAKY+PSP+EVAASCD+TFAMLAD
Sbjct: 52 GLGIMGTPMALNLIKAGVDLTVWNRTKSKCDPLISLGAKYKPSPEEVAASCDLTFAMLAD 111
Query: 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197
P+SA+DVACGKHG A+G+GPGKGYVDVSTVD DTSKLINGHIK+TGA FLEAPVSGSKKP
Sbjct: 112 PQSAVDVACGKHGVANGIGPGKGYVDVSTVDVDTSKLINGHIKSTGALFLEAPVSGSKKP 171
Query: 198 AEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGR-SCTFSY 256
AEDGQLIFL AGD++LY TVAP LDIMGKS+FYLGDVGNGAAMKLVVNMIMG +FS
Sbjct: 172 AEDGQLIFLTAGDRNLYETVAPFLDIMGKSKFYLGDVGNGAAMKLVVNMIMGSMMASFSE 231
Query: 257 SFLTLEFV 264
L E V
Sbjct: 232 GLLLSEKV 239
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|124359345|gb|ABD28508.2| Hydroxyacid dehydrogenase/reductase; 6-phosphogluconate dehydrogenase, C-terminal-like [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 333 bits (855), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 172/248 (69%), Positives = 191/248 (77%), Gaps = 18/248 (7%)
Query: 24 CSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSA------EADELPGRIGFL 77
CS F + S F NS S + VSA + + P RIGFL
Sbjct: 3 CSQFATTMRSAFSLHHFNS-----------PRLSRHVSNVSASLQPQGQGTDTPPRIGFL 51
Query: 78 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD 137
G+GIMGTPMA NL+KAG D+TVWNRTKSKCDPLISLGAKY+PSP+EVAASCD+TFAMLAD
Sbjct: 52 GLGIMGTPMALNLIKAGVDLTVWNRTKSKCDPLISLGAKYKPSPEEVAASCDLTFAMLAD 111
Query: 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197
P+SA+DVACGKHG A+G+GPGKGYVDVSTVD DTSKLINGHIK+TGA FLEAPVSGSKKP
Sbjct: 112 PQSAVDVACGKHGVANGIGPGKGYVDVSTVDVDTSKLINGHIKSTGALFLEAPVSGSKKP 171
Query: 198 AEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGR-SCTFSY 256
AEDGQLIFL AGD++LY TVAP LDIMGKS+FYLGDVGNGAAMKLVVNMIMG +FS
Sbjct: 172 AEDGQLIFLTAGDRNLYETVAPFLDIMGKSKFYLGDVGNGAAMKLVVNMIMGSMMASFSE 231
Query: 257 SFLTLEFV 264
L E V
Sbjct: 232 GLLLSEKV 239
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850160|ref|XP_002892961.1| hypothetical protein ARALYDRAFT_471975 [Arabidopsis lyrata subsp. lyrata] gi|297338803|gb|EFH69220.1| hypothetical protein ARALYDRAFT_471975 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 188/230 (81%), Gaps = 1/230 (0%)
Query: 21 MSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADEL-PGRIGFLGM 79
M++CS FCP++P FR KP + +KP LS++V+SS + + DEL IGFLGM
Sbjct: 1 MALCSIFCPRIPLRFRPKPKSPFLSKPQICLSYRVYSSLQSTTPSTKDELGTVSIGFLGM 60
Query: 80 GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE 139
GIMG+PMAQNL+KAGCDVTVWNR+KSKCDPL+ LGAKY+ SP+EV A+CD+TFAMLADPE
Sbjct: 61 GIMGSPMAQNLIKAGCDVTVWNRSKSKCDPLVRLGAKYKSSPEEVTATCDLTFAMLADPE 120
Query: 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE 199
SA+DVACGK+GA G+ GKGYVDVSTVD +S LI+ IK TGA FLEAPVSGSKKPAE
Sbjct: 121 SAIDVACGKNGAVFGISSGKGYVDVSTVDAASSILISKQIKDTGALFLEAPVSGSKKPAE 180
Query: 200 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
DGQLIFL AGDK LY AP LDIMGKSRFYLG+VGNGAAMKLVVNMIMG
Sbjct: 181 DGQLIFLTAGDKLLYEKAAPFLDIMGKSRFYLGEVGNGAAMKLVVNMIMG 230
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217073952|gb|ACJ85336.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 172/251 (68%), Positives = 192/251 (76%), Gaps = 18/251 (7%)
Query: 24 CSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSA------EADELPGRIGFL 77
CS F + S F NS S + VSA + + P RIGFL
Sbjct: 3 CSQFATTMRSAFSLHHFNS-----------PRLSRHVSNVSASLQPQGQGTDTPPRIGFL 51
Query: 78 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD 137
G+GIMGTPMA NL+KAG D+TVWNRTKSKCDPLISLGAKY+PSP+EVAASCD+TFAMLAD
Sbjct: 52 GLGIMGTPMALNLIKAGVDLTVWNRTKSKCDPLISLGAKYKPSPEEVAASCDLTFAMLAD 111
Query: 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197
P+SA+DVACGKHG A+G+GPGKGYVDVSTVD DTSKLINGHIK+TGA FLEAPVSGSKKP
Sbjct: 112 PQSAVDVACGKHGVANGIGPGKGYVDVSTVDVDTSKLINGHIKSTGALFLEAPVSGSKKP 171
Query: 198 AEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGR-SCTFSY 256
AEDGQLIFL AGD++LY TVAP LDIMGKS+FYLGDVGNGAAMKLVVNMIMG +FS
Sbjct: 172 AEDGQLIFLTAGDRNLYETVAPFLDIMGKSKFYLGDVGNGAAMKLVVNMIMGSMMASFSE 231
Query: 257 SFLTLEFVDFL 267
L E V +
Sbjct: 232 GLLLSEKVGLV 242
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | ||||||
| TAIR|locus:2007923 | 358 | GLYR2 "glyoxylate reductase 2" | 0.813 | 0.659 | 0.701 | 4.4e-84 | |
| TIGR_CMR|GSU_1372 | 286 | GSU_1372 "3-hydroxyisobutyrate | 0.617 | 0.625 | 0.592 | 1.5e-53 | |
| TAIR|locus:2094518 | 289 | GLYR1 "glyoxylate reductase 1" | 0.606 | 0.608 | 0.590 | 7.4e-50 | |
| UNIPROTKB|K7EMM8 | 524 | GLYR1 "Putative oxidoreductase | 0.734 | 0.406 | 0.450 | 3.4e-45 | |
| UNIPROTKB|Q49A26 | 553 | GLYR1 "Putative oxidoreductase | 0.734 | 0.385 | 0.450 | 3.4e-45 | |
| UNIPROTKB|A4FUF0 | 553 | GLYR1 "Putative oxidoreductase | 0.682 | 0.358 | 0.464 | 4.4e-45 | |
| UNIPROTKB|F1NFS2 | 575 | GLYR1 "Putative oxidoreductase | 0.682 | 0.344 | 0.464 | 5.6e-45 | |
| UNIPROTKB|F1NFS3 | 553 | GLYR1 "Putative oxidoreductase | 0.682 | 0.358 | 0.464 | 5.6e-45 | |
| UNIPROTKB|Q5ZLS7 | 553 | GLYR1 "Putative oxidoreductase | 0.682 | 0.358 | 0.464 | 5.6e-45 | |
| UNIPROTKB|E2QVM3 | 575 | GLYR1 "Uncharacterized protein | 0.682 | 0.344 | 0.464 | 5.6e-45 |
| TAIR|locus:2007923 GLYR2 "glyoxylate reductase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 167/238 (70%), Positives = 194/238 (81%)
Query: 13 FLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPG 72
F SSS+ AM++CS CP++P FR KPI+ +KP L+++V+SS + + DEL
Sbjct: 8 FASSSSKAMALCS-ICPRIPLRFRPKPISPFLSKPQICLAYRVYSSLQSTTPSTRDELGT 66
Query: 73 -RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 131
IGFLGMGIMG+PMAQNL+KAGCDVTVWNRTKSKCDPL+ LGAKY+ SP+EV A+CD+T
Sbjct: 67 VSIGFLGMGIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLT 126
Query: 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 191
FAMLADPESA+DVACGK+GA G+ GKGYVDVSTVD +S LI+ IK TGA FLEAPV
Sbjct: 127 FAMLADPESAIDVACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPV 186
Query: 192 SGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
SGSKKPAEDGQLIFL AGDK LY AP LDIMGKS+FYLG+VGNGAAMKLVVNMIMG
Sbjct: 187 SGSKKPAEDGQLIFLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMIMG 244
|
|
| TIGR_CMR|GSU_1372 GSU_1372 "3-hydroxyisobutyrate dehydrogenase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 106/179 (59%), Positives = 131/179 (73%)
Query: 75 GFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134
GFLG+GIMG PMA NL++AG DVTVWNR +KC PL++LGA+ SP EV A+CD+T AM
Sbjct: 5 GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64
Query: 135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS 194
LADP +A +V G +G G+G G+GY+D+STVD +TS I + A G FLEAPVSG+
Sbjct: 65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124
Query: 195 KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCT 253
KKPAEDG LI LAAGD+SL+ P +GK +LG+VG GA MKLVVNMIMG+ T
Sbjct: 125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMT 183
|
|
| TAIR|locus:2094518 GLYR1 "glyoxylate reductase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 104/176 (59%), Positives = 121/176 (68%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 133
+GFLG+GIMG M+ NLLK G VTVWNRT SKCD L+ GA SP EV C T A
Sbjct: 3 VGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIA 62
Query: 134 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193
ML+DP +A+ V K G + GKGY+D+STVD +TS IN I G F+E PVSG
Sbjct: 63 MLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSG 122
Query: 194 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
SKKPAEDGQLI LAAGDK+L+ P D++GK FYLG VGNGA MKL+VNMIMG
Sbjct: 123 SKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMG 178
|
|
| UNIPROTKB|K7EMM8 GLYR1 "Putative oxidoreductase GLYR1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 96/213 (45%), Positives = 132/213 (61%)
Query: 52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
S + ++ +T V+ +IGFLG+G+MG+ + NLLK G VTVWNRT KCD I
Sbjct: 219 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 278
Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
GA+ +P EV ++CD+TFA ++DP++A D+ G G G+ PGK YVD+STVD DT
Sbjct: 279 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 338
Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
+ I + G FLEAPVSG+++ + DG L+ LAAGD+ LY + MGK+ F+L
Sbjct: 339 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 398
Query: 232 GDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFV 264
G+VGN A M L+VNM+ G LTL V
Sbjct: 399 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAHV 431
|
|
| UNIPROTKB|Q49A26 GLYR1 "Putative oxidoreductase GLYR1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 96/213 (45%), Positives = 132/213 (61%)
Query: 52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
S + ++ +T V+ +IGFLG+G+MG+ + NLLK G VTVWNRT KCD I
Sbjct: 248 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 307
Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
GA+ +P EV ++CD+TFA ++DP++A D+ G G G+ PGK YVD+STVD DT
Sbjct: 308 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 367
Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
+ I + G FLEAPVSG+++ + DG L+ LAAGD+ LY + MGK+ F+L
Sbjct: 368 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427
Query: 232 GDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFV 264
G+VGN A M L+VNM+ G LTL V
Sbjct: 428 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAHV 460
|
|
| UNIPROTKB|A4FUF0 GLYR1 "Putative oxidoreductase GLYR1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 92/198 (46%), Positives = 128/198 (64%)
Query: 52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
S + ++ +T V+ +IGFLG+G+MG+ + NLLK G VTVWNRT KCD I
Sbjct: 248 STSIQAADSTAVNGSVTPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 307
Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
GA+ +P EV ++CD+TFA ++DP++A D+ G G G+ PGK YVD+STVD DT
Sbjct: 308 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 367
Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
+ I + G FLEAPVSG+++ + DG L+ LAAGD+ LY + MGK+ F+L
Sbjct: 368 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427
Query: 232 GDVGNGAAMKLVVNMIMG 249
G+VGN A M L+VNM+ G
Sbjct: 428 GEVGNAAKMMLIVNMVQG 445
|
|
| UNIPROTKB|F1NFS2 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 92/198 (46%), Positives = 128/198 (64%)
Query: 52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
S + ++ +T V+ +IGFLG+G+MG+ + NLLK G VTVWNRT KCD I
Sbjct: 270 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 329
Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
GA+ +P EV ++CD+TFA ++DP++A D+ G G G+ PGK YVD+STVD DT
Sbjct: 330 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 389
Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
+ I + G FLEAPVSG+++ + DG L+ LAAGD+ LY + MGK+ F+L
Sbjct: 390 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 449
Query: 232 GDVGNGAAMKLVVNMIMG 249
G+VGN A M L+VNM+ G
Sbjct: 450 GEVGNAAKMMLIVNMVQG 467
|
|
| UNIPROTKB|F1NFS3 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 92/198 (46%), Positives = 128/198 (64%)
Query: 52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
S + ++ +T V+ +IGFLG+G+MG+ + NLLK G VTVWNRT KCD I
Sbjct: 248 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 307
Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
GA+ +P EV ++CD+TFA ++DP++A D+ G G G+ PGK YVD+STVD DT
Sbjct: 308 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 367
Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
+ I + G FLEAPVSG+++ + DG L+ LAAGD+ LY + MGK+ F+L
Sbjct: 368 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427
Query: 232 GDVGNGAAMKLVVNMIMG 249
G+VGN A M L+VNM+ G
Sbjct: 428 GEVGNAAKMMLIVNMVQG 445
|
|
| UNIPROTKB|Q5ZLS7 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 92/198 (46%), Positives = 128/198 (64%)
Query: 52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
S + ++ +T V+ +IGFLG+G+MG+ + NLLK G VTVWNRT KCD I
Sbjct: 248 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 307
Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
GA+ +P EV ++CD+TFA ++DP++A D+ G G G+ PGK YVD+STVD DT
Sbjct: 308 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 367
Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
+ I + G FLEAPVSG+++ + DG L+ LAAGD+ LY + MGK+ F+L
Sbjct: 368 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427
Query: 232 GDVGNGAAMKLVVNMIMG 249
G+VGN A M L+VNM+ G
Sbjct: 428 GEVGNAAKMMLIVNMVQG 445
|
|
| UNIPROTKB|E2QVM3 GLYR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 92/198 (46%), Positives = 128/198 (64%)
Query: 52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
S + ++ +T V+ +IGFLG+G+MG+ + NLLK G VTVWNRT KCD I
Sbjct: 270 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 329
Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
GA+ +P EV ++CD+TFA ++DP++A D+ G G G+ PGK YVD+STVD DT
Sbjct: 330 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 389
Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
+ I + G FLEAPVSG+++ + DG L+ LAAGD+ LY + MGK+ F+L
Sbjct: 390 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 449
Query: 232 GDVGNGAAMKLVVNMIMG 249
G+VGN A M L+VNM+ G
Sbjct: 450 GEVGNAAKMMLIVNMVQG 467
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| F4I907 | GLYR2_ARATH | 1, ., 1, ., 1, ., n, 1, 1 | 0.7111 | 0.7724 | 0.6256 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 290 | |||
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 4e-58 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 4e-53 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 1e-45 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 1e-37 | |
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 9e-30 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 2e-29 | |
| PRK15461 | 296 | PRK15461, PRK15461, NADH-dependent gamma-hydroxybu | 1e-22 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 1e-18 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 3e-11 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 2e-08 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 1e-05 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 1e-05 | |
| pfam03807 | 93 | pfam03807, F420_oxidored, NADP oxidoreductase coen | 1e-04 | |
| COG0345 | 266 | COG0345, ProC, Pyrroline-5-carboxylate reductase [ | 2e-04 | |
| cd05198 | 302 | cd05198, formate_dh_like, Formate/glycerate and re | 3e-04 | |
| pfam02826 | 175 | pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro | 4e-04 | |
| TIGR00873 | 467 | TIGR00873, gnd, 6-phosphogluconate dehydrogenase ( | 4e-04 | |
| PLN02350 | 493 | PLN02350, PLN02350, phosphogluconate dehydrogenase | 7e-04 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 0.001 | |
| PRK11880 | 267 | PRK11880, PRK11880, pyrroline-5-carboxylate reduct | 0.001 | |
| cd12164 | 306 | cd12164, GDH_like_2, Putative glycerate dehydrogen | 0.002 | |
| PTZ00142 | 470 | PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena | 0.004 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 4e-58
Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 1/178 (0%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVT 131
+I F+G+GIMG+PMA NLLKAG +VTV+NRT K + L + GA SP E AA DV
Sbjct: 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVV 61
Query: 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 191
ML D + V G++G G+ PG +D+ST+ +T++ + + A G FL+APV
Sbjct: 62 ITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPV 121
Query: 192 SGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
SG A G L + GD + P+L+ MGK+ ++G VG G A KL N+++
Sbjct: 122 SGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLA 179
|
Length = 286 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 4e-53
Identities = 66/162 (40%), Positives = 92/162 (56%), Gaps = 1/162 (0%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+IGF+G+G+MG+PMA NLLKAG VTV+NRT K + L++ GA SP E AS DV
Sbjct: 2 KIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVVI 61
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
M+ + V G+ G G+ PG +D ST D D ++ + G FL+APVS
Sbjct: 62 TMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAEKGIHFLDAPVS 121
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF-YLGD 233
G ++ AE G L + GD+ + V P+L+ MG Y+G
Sbjct: 122 GGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGACVTHYIGP 163
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 1e-45
Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 1/176 (0%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
++GF+G+GIMG PM++NLLKAG + V++R +I+ GA+ + VA CDV
Sbjct: 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVII 63
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
ML + +VA G++G G PG +D+S++ S+ I +KA G L+APVS
Sbjct: 64 TMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVS 123
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM 248
G + A DG L + GDK++++ L+ M S + GD+G G KL N ++
Sbjct: 124 GGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKL-ANQVI 178
|
Length = 296 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 1e-37
Identities = 61/176 (34%), Positives = 98/176 (55%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
++GF+G+GIMG+PM+ NL KAG + V D L++ GA + +V DV F
Sbjct: 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIF 60
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
M+ D +VA G++G G PGK VD+S++ SK +K G +L+APVS
Sbjct: 61 TMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVS 120
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM 248
G + A +G L + GD+++++ V PL + +GK+ +G G+G K+ +I+
Sbjct: 121 GGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIV 176
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 9e-30
Identities = 62/176 (35%), Positives = 90/176 (51%)
Query: 76 FLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML 135
F+G+G MG PMA NLLKAG V V++ + ++ GA+ SP E A D ML
Sbjct: 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITML 60
Query: 136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK 195
+ + V G G + G +D ST+D D+++ + A GA F++APVSG
Sbjct: 61 PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGV 120
Query: 196 KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS 251
A G L F+ G + P+L MG++ + GD G G A K+ NM++G S
Sbjct: 121 GGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGIS 176
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-29
Identities = 58/177 (32%), Positives = 96/177 (54%), Gaps = 1/177 (0%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
++GF+G+GIMGTPMA NL +AG + V D L+SLGA + +V + D+ F
Sbjct: 2 KLGFIGLGIMGTPMAINLARAGHQLHV-TTIGPVADELLSLGAVSVETARQVTEASDIIF 60
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
M+ D +V G++G GK VD+S++ +K + G +L+APVS
Sbjct: 61 IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVS 120
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
G + A +G L + GD++++ V PL +++GK+ +G G+G K+ +I+
Sbjct: 121 GGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVA 177
|
Length = 292 |
| >gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 1e-22
Identities = 53/172 (30%), Positives = 81/172 (47%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 133
I F+G+G MG+PMA NLLK G + V++ D L+ GA SP + AA +
Sbjct: 4 IAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVIT 63
Query: 134 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193
ML + + V G++G G+ +D+ST+ + + ++A G S ++ PV
Sbjct: 64 MLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR 123
Query: 194 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVN 245
+ A G L+ LA G P+L MG G G G +KL+ N
Sbjct: 124 TSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRVKLINN 175
|
Length = 296 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 1e-18
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 3/180 (1%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
RIGF+G+G MG MA +LLK+ V ++ K + G SP EVA DV
Sbjct: 326 RIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLV 385
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS--FLEAP 190
M+A+ A +V G GA S + G V STV + ++ G ++AP
Sbjct: 386 IMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP 445
Query: 191 VSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL-GDVGNGAAMKLVVNMIMG 249
VSG K A G L +A+G + +L + + + + G G G+ +K+V ++ G
Sbjct: 446 VSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAG 505
|
Length = 1378 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 3e-11
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 3/181 (1%)
Query: 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 131
G +GF+G+ + +A +LL++G V + + + LG SP E A
Sbjct: 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAAL 64
Query: 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFL-EA 189
+L+ P+ DV G GAA G+ G + ST+ KL + FL +A
Sbjct: 65 VVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124
Query: 190 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL-GDVGNGAAMKLVVNMIM 248
VS +G+L+ +A+G P L M + + G++G G+ +K+V ++
Sbjct: 125 YVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLE 184
Query: 249 G 249
G
Sbjct: 185 G 185
|
Length = 1378 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-08
Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 21/209 (10%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCD--- 129
++G +G+G MG MA+ L + G +V ++ + D LG + S +E+ + +
Sbjct: 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPR 61
Query: 130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSK----LINGHIKAT-GA 184
+ M+ E V + PG D+ VDG S+ L A G
Sbjct: 62 TIWVMVPAGEVTESVI---KDLYPLLSPG----DI-VVDGGNSRYKDDLRRAEELAERGI 113
Query: 185 SFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIM---GKSRFYLGDVGNGAAMK 241
+++ SG +G + + GDK +Y+ + P+ + G + G VG+G +K
Sbjct: 114 HYVDCGTSGGVWGLRNGYCL-MVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLK 172
Query: 242 LVVNMI-MGRSCTFSYSFLTLEFVDFLIN 269
+V N I G ++ L+ DF +
Sbjct: 173 MVHNGIEYGMMQAYAEGLELLDKSDFDFD 201
|
Length = 299 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 28/189 (14%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA---SCDV 130
IG +G+G MG + + LL G DV ++ ++ + L GA S DE+ A + +
Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRI 62
Query: 131 TFAML--ADP-ESAMDVACGKHGAASGMGPGKGYVDVSTVDG------DTSKLINGHIKA 181
+ M+ D ++ +D A + G D+ +DG D+ + +
Sbjct: 63 VWLMVPAGDITDAVID------DLAPLLSAG----DI-VIDGGNSNYKDSLRR-AKLLAE 110
Query: 182 TGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF---YLGDVGNGA 238
G FL+ SG AE G + GD+ + P+ + Y G G+G
Sbjct: 111 KGIHFLDVGTSGGVWGAERG-YCLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGSGH 169
Query: 239 AMKLVVNMI 247
+K+V N I
Sbjct: 170 FVKMVHNGI 178
|
Length = 300 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-05
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS 127
++G +G+G MG MA+ LL+ G +V ++R + L GA S +E+ A
Sbjct: 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAK 56
|
Length = 301 |
| >gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme F420-dependent | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLI-SLGAKYQP-SPDEVAASCD 129
+IG +G G MG +A+ L AG +V + +R K L LG K S +E D
Sbjct: 1 KIGIIGAGNMGEALARGLAAAGHEVVIANSRNPEKAAALAEELGVKATAVSNEEAVEEAD 60
Query: 130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS 165
V F + PE A +V + + GK + ++
Sbjct: 61 VVFLAVK-PEDAPEVL----AELADLLKGKLVISIT 91
|
Length = 93 |
| >gnl|CDD|223422 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAAS 127
+IGF+G G MG + LLK+G ++ V NR++ K L + G E
Sbjct: 3 KIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEE 62
Query: 128 CDVTF 132
DV F
Sbjct: 63 ADVVF 67
|
Length = 266 |
| >gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 58 SQATGVSAEADELPGR------IGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPL 110
+ G PG +G +G+G +G +A+ L+A G V ++RT+ +P
Sbjct: 121 AVRRGWGWLWAGFPGYELEGKTVGIVGLGRIGQRVAK-RLQAFGMKVLYYDRTRKP-EPE 178
Query: 111 ISLGAKYQPSPDEVAASCDV 130
LG + S DE+ A DV
Sbjct: 179 EDLGFRV-VSLDELLAQSDV 197
|
Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302 |
| >gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-04
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 69 ELPG-RIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA 126
EL G +G +G+G +G +A+ LKA G V ++R +LGA+Y S DE+ A
Sbjct: 32 ELSGKTVGIIGLGRIGRAVAR-RLKAFGMKVIAYDRYPK--AEAEALGARYV-SLDELLA 87
Query: 127 SCDV 130
DV
Sbjct: 88 ESDV 91
|
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175 |
| >gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 34/196 (17%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF- 132
IG +G+ +MG+ +A N+ G V+V+NRT K D + A++ V A F
Sbjct: 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFL---AEHAKGKKIVGAYSIEEFV 58
Query: 133 AMLADPESAMDVACGKHGAASG---------MGPGKGYVDVSTVDG------DTSKLING 177
L P M + K GA + G D+ +DG DT +
Sbjct: 59 QSLERPRKIMLMV--KAGAPVDAVINQLLPLLEKG----DI-IIDGGNSHYPDTERR-YK 110
Query: 178 HIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD-IMGKSR-----FYL 231
+KA G F+ + VSG ++ A G I + G + VAP+ I K ++
Sbjct: 111 ELKAKGILFVGSGVSGGEEGARKGPSI-MPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWI 169
Query: 232 GDVGNGAAMKLVVNMI 247
G G G +K+V N I
Sbjct: 170 GPDGAGHYVKMVHNGI 185
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467 |
| >gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 66 EADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108
A RIG G+ +MG +A N+ + G ++V+NRT SK D
Sbjct: 1 MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVD 43
|
Length = 493 |
| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 55/198 (27%), Positives = 80/198 (40%), Gaps = 38/198 (19%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI---SLGAKYQPSPD--EVAASC 128
IG +G+ +MG+ +A N+ G V V+NRT K D + + G P+ E AS
Sbjct: 6 IGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVAS- 64
Query: 129 DVTFAMLADPESAM-DVACGK------HGAASGMGPGKGYVDVSTVDG------DTSKLI 175
L P + V G + G D+ +DG DT +
Sbjct: 65 ------LEKPRKILLMVKAGTPVDAVIEQLLPLLEKG----DI-IIDGGNSHYKDTIRR- 112
Query: 176 NGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL-DIMGKSR-----F 229
N + G F+ VSG ++ A G I + G K Y VAP+L I K
Sbjct: 113 NKELSEKGILFVGMGVSGGEEGARHGPSI-MPGGQKEAYELVAPILTKIAAKVDGEPCCT 171
Query: 230 YLGDVGNGAAMKLVVNMI 247
++G G G +K+V N I
Sbjct: 172 WIGPDGAGHFVKMVHNGI 189
|
Length = 473 |
| >gnl|CDD|237008 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.001
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASC 128
+IGF+G G M + + LL +G D+ V + + K L G + E A
Sbjct: 4 KIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEA 63
Query: 129 DVTF 132
DV
Sbjct: 64 DVVV 67
|
Length = 267 |
| >gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.002
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104
R+G LG+G +G +A+ L G V+ W+R+
Sbjct: 134 RVGVLGLGELGAAVARRLAALGFPVSGWSRSP 165
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.004
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108
IG +G+ +MG +A N+ G ++V+NRT K +
Sbjct: 4 IGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTE 38
|
Length = 470 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 99.98 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.98 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.97 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.97 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 99.97 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.97 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.97 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 99.97 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 99.97 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.96 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.96 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.96 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.96 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 99.96 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 99.96 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 99.96 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.96 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 99.95 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 99.95 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.95 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 99.95 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 99.95 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 99.95 | |
| PLN02928 | 347 | oxidoreductase family protein | 99.95 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.95 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 99.95 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.94 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 99.94 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 99.94 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 99.93 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.93 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.92 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.9 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 99.9 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.89 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 99.89 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.88 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.88 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.87 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.87 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.87 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.85 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.84 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.84 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.83 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.81 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.81 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.8 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.8 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.8 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.8 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.8 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.79 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.79 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.79 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.78 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.78 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.78 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.77 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.77 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.77 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.76 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.76 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.75 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.75 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.75 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.75 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.75 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.75 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.75 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.75 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.74 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.74 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.74 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.72 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.72 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.67 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.67 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.67 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.67 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.65 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.65 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.65 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.64 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.63 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.63 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.62 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.61 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.6 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.6 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.59 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.57 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.56 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.56 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.55 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.53 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 99.53 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.52 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.52 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.49 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.48 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.47 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.47 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.46 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.43 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 99.43 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.42 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.42 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.41 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.39 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.35 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.34 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 99.33 | |
| PLN02494 | 477 | adenosylhomocysteinase | 99.28 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 99.27 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 99.27 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.26 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 99.21 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 99.2 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 99.14 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.12 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.11 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 99.11 | |
| KOG0067 | 435 | consensus Transcription factor CtBP [Transcription | 99.11 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 99.1 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 99.1 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 99.09 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 99.08 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 99.06 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.02 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.98 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.96 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 98.93 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.92 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.8 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 98.75 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.74 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.67 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.66 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.64 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.64 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.61 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.58 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.58 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.57 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 98.56 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 98.54 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.54 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.5 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 98.49 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.48 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 98.43 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 98.42 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 98.41 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 98.4 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 98.39 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.39 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 98.39 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.38 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 98.35 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 98.35 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.34 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 98.29 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 98.29 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 98.28 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 98.27 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 98.26 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 98.25 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 98.25 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 98.24 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 98.22 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 98.22 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 98.22 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 98.21 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 98.2 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 98.2 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 98.18 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.18 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.17 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 98.17 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.15 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 98.15 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 98.15 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 98.14 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 98.14 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.14 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.13 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.12 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 98.12 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.12 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 98.09 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.08 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 98.07 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 98.06 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 98.06 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 98.05 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 98.05 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 98.03 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.03 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 98.02 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.99 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 97.96 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.96 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 97.96 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.93 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.93 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 97.93 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.92 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.92 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.91 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 97.91 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 97.91 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.91 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.9 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.9 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.88 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 97.88 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 97.86 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.85 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.84 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.84 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.83 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.82 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.8 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.8 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.8 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.79 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.79 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.79 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 97.78 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.78 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.78 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.77 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.77 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.77 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.75 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.71 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.69 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.69 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.68 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 97.67 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.66 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.66 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.65 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 97.62 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.62 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.62 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.62 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.6 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.59 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.58 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.56 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.55 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.55 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.55 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.53 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 97.52 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.52 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.52 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.52 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.51 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 97.5 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.49 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.48 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.48 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.46 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.46 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.45 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.45 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 97.45 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.44 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 97.44 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.44 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.43 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.42 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 97.42 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.42 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.42 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.41 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.4 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.4 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.38 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.38 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 97.37 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 97.37 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 97.37 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.36 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 97.34 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 97.34 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 97.34 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.33 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 97.29 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 97.28 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 97.27 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.27 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.26 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.26 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.23 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.22 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.21 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 97.2 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 97.19 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 97.19 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 97.18 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.17 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 97.16 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.16 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 97.16 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.15 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.15 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 97.14 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 97.14 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.13 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.13 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.13 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 97.12 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.11 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.09 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.09 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 97.08 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.08 | |
| PLN00106 | 323 | malate dehydrogenase | 97.08 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 97.07 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.07 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.06 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 97.06 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.06 | |
| PLN02477 | 410 | glutamate dehydrogenase | 97.04 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.03 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 97.03 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.02 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 97.02 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.01 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 97.01 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 97.0 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.99 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.99 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.98 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.98 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 96.97 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.97 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.96 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 96.94 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 96.94 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.93 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.92 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 96.91 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.88 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 96.84 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 96.83 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 96.82 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.82 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.81 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 96.8 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.79 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.78 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 96.77 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.77 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.77 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 96.75 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 96.73 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.71 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.7 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 96.7 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 96.69 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 96.69 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 96.69 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.69 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.68 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.68 | |
| PRK07411 | 390 | hypothetical protein; Validated | 96.67 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.66 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.63 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 96.62 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 96.61 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.58 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.58 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 96.56 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 96.55 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 96.53 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 96.5 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 96.49 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 96.49 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 96.47 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.47 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.46 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 96.45 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 96.44 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 96.42 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 96.42 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 96.42 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 96.42 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.41 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.41 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 96.37 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 96.35 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 96.34 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 96.34 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 96.33 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 96.3 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.3 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 96.29 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 96.26 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 96.25 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 96.23 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 96.22 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 96.21 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 96.2 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 96.2 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 96.19 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 96.19 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.19 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.14 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.13 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 96.12 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 96.11 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 96.1 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.09 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 96.08 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 96.08 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 96.07 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 96.07 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 96.05 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 96.05 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 96.05 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 96.05 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 96.03 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.02 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.01 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 96.01 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 96.0 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 96.0 | |
| PRK08643 | 256 | acetoin reductase; Validated | 95.99 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 95.98 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 95.98 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 95.98 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 95.98 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 95.97 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 95.96 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 95.96 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 95.94 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 95.92 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.92 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 95.91 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 95.91 | |
| PRK05717 | 255 | oxidoreductase; Validated | 95.9 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 95.9 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.88 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 95.88 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 95.88 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 95.86 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.85 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 95.84 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 95.83 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 95.83 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 95.82 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 95.81 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 95.79 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 95.79 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 95.79 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 95.79 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 95.78 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.77 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 95.77 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.77 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 95.74 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 95.73 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 95.73 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 95.73 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 95.73 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 95.73 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.72 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 95.72 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 95.71 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 95.7 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 95.7 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 95.7 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.7 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 95.69 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 95.69 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.68 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 95.67 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 95.66 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 95.66 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 95.66 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 95.64 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 95.63 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 95.61 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 95.61 | |
| COG0057 | 335 | GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt | 95.61 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 95.61 | |
| PF00289 | 110 | CPSase_L_chain: Carbamoyl-phosphate synthase L cha | 95.6 |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=270.11 Aligned_cols=217 Identities=35% Similarity=0.564 Sum_probs=208.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+||++||+|.||..+|++|.+.|++|.+|||++++ .+.+++.|.....+..|+++++|+||+++|.+++++.++++...
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 47999999999999999999999999999999998 55566679999999999999999999999999999999987678
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 230 (290)
+.+.+++|+++||+|+.++...+++.+.++++|++|+|+|+++++..+..+.+++++||+++.+++++++|+.+|.++++
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~ 160 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH 160 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccCC
Q 022909 231 LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDGN 288 (290)
Q Consensus 231 ~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~~ 288 (290)
+|+.|.+...|+++|++...+ .+++|++.++++.|+|++.+.+++..+..+||.+.++
T Consensus 161 ~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~ 219 (286)
T COG2084 161 VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENY 219 (286)
T ss_pred ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhh
Confidence 999999999999999999888 9999999999999999999999999999999998764
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=242.96 Aligned_cols=218 Identities=40% Similarity=0.651 Sum_probs=210.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
.++||+||+|.||..++..|.+.||+|++|||+.++.+++++.|....+++.|+.++||+||.++|.+.+.++++++...
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~G 114 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSG 114 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999988778
Q ss_pred ccccCCCCCEE-EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEE
Q 022909 151 AASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF 229 (290)
Q Consensus 151 ~~~~~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~ 229 (290)
+++.++++... ||.|+.+|....++.+++..++.+|+++|++++...+..+.++++++|+++.++....+++.+|++++
T Consensus 115 vl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~ 194 (327)
T KOG0409|consen 115 VLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVV 194 (327)
T ss_pred ceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEE
Confidence 88888898877 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccCC
Q 022909 230 YLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDGN 288 (290)
Q Consensus 230 ~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~~ 288 (290)
++|..|.+..+|+++|.+.+.. .+++|++.++++.|+|..++.+++++...+|+.+.++
T Consensus 195 ~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~ 254 (327)
T KOG0409|consen 195 FLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNP 254 (327)
T ss_pred EecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCc
Confidence 9999999999999999998888 9999999999999999999999999999999988775
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=245.94 Aligned_cols=216 Identities=25% Similarity=0.417 Sum_probs=199.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~ 151 (290)
++|+|||+|.||..+++.|...|++|.+|||++++.+.+.+.+...+.+..++++++|+|++++|.+..++.++.....+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 47999999999999999999999999999999999888888888888899999999999999999988888888544456
Q ss_pred cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEe
Q 022909 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 152 ~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 231 (290)
+..++++.++||+|++.+...+++.+.+.++++.|+++|+++++.....+.++++++++++.+++++++|+.+|..++++
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~ 161 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA 161 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence 77789999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccC
Q 022909 232 GDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDG 287 (290)
Q Consensus 232 ~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~ 287 (290)
++.|.+..+|++.|++...+ ..++|++.++++.|+|++.+.+++..+..+++.+..
T Consensus 162 g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~ 218 (296)
T PRK15461 162 GGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTT 218 (296)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHc
Confidence 99999999999999998777 999999999999999999999999998888776544
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=242.63 Aligned_cols=215 Identities=29% Similarity=0.451 Sum_probs=196.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~ 151 (290)
|+|||||+|+||..+++.|.+.|++|.+||++++ .+.+.+.|...+.+..++++++|+|++++|.+++++.++++...+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 3799999999999999999999999999999874 566666788778899999999999999999988899988543446
Q ss_pred cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEe
Q 022909 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 152 ~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 231 (290)
.+.+++|+++||+|+..+...+++.+.+.+.++.|+++|+++++.....+.+.++++|+++.+++++++|+.+|.+++++
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~ 159 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV 159 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence 67788999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccC
Q 022909 232 GDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDG 287 (290)
Q Consensus 232 ~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~ 287 (290)
++.|++..+|+++|++...+ .++.|++.++++.|+|++++.+++......|+.+..
T Consensus 160 G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~ 216 (292)
T PRK15059 160 GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEV 216 (292)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHh
Confidence 99999999999999998877 999999999999999999999999988888887653
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=238.95 Aligned_cols=217 Identities=31% Similarity=0.519 Sum_probs=198.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
.++|||||+|.||..+++.+...|++|.+|||++++.+.+.+.+...+++.+++++++|+|++++|.+.+++.+++..++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~ 81 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENG 81 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcch
Confidence 47899999999999999999999999999999998888777778877888999999999999999998888888754345
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 230 (290)
+.+.+++++++||+|+..+...+++.+.+.+++++|+++|++++++....+.+.+++++++++++.+.++++.+|..+++
T Consensus 82 ~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~ 161 (296)
T PRK11559 82 IIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVH 161 (296)
T ss_pred HhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEE
Confidence 67788999999999999999999999999999999999999999887778888899999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccC
Q 022909 231 LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDG 287 (290)
Q Consensus 231 ~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~ 287 (290)
+++.+.+..+|++.|.+.+.+ .+++|++.++++.|++++++.+++.....+|+.+..
T Consensus 162 ~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~ 219 (296)
T PRK11559 162 TGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDA 219 (296)
T ss_pred eCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHh
Confidence 999999999999999998888 999999999999999999999999988888776543
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=236.79 Aligned_cols=215 Identities=30% Similarity=0.494 Sum_probs=196.1
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccccc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAA 152 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~ 152 (290)
+|||||+|.||..+++.|...|++|.+|||++++.+.+.+.|....++.+++++++|+|++++|.+..++.+++..+.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 59999999999999999999999999999999888888888887778899999999999999999888888874333456
Q ss_pred ccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeC
Q 022909 153 SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG 232 (290)
Q Consensus 153 ~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~ 232 (290)
..+++++++||+|+..+.+.+++.+.+++++++|+++|+++++.....+.+.+++++++++++.++++++.+|.++++++
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g 160 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG 160 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence 77899999999999999999999999999999999999999887777788888999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccC
Q 022909 233 DVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDG 287 (290)
Q Consensus 233 ~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~ 287 (290)
+.+.+...|+++|.+.... .+++|++.++++.|+|++++.+++..+..+|+.+..
T Consensus 161 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~ 216 (291)
T TIGR01505 161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEV 216 (291)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHh
Confidence 9999999999999998887 999999999999999999999999988888886643
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=235.01 Aligned_cols=211 Identities=31% Similarity=0.445 Sum_probs=196.0
Q ss_pred EEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccC
Q 022909 76 FLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGM 155 (290)
Q Consensus 76 iiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~ 155 (290)
|||+|.||..+++.|.+.|++|.+|||++++.+.+.+.|....++..++++++|+|++++|.+..++.++.+.+.+.+.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999999988888888888888999999999999999999888888885445667788
Q ss_pred CCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcc
Q 022909 156 GPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVG 235 (290)
Q Consensus 156 ~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g 235 (290)
++++++||+|+..+...+.+.+.++++++.|+++|+++++.....+.+.++++|+++.+++++++|+.+|.+++++++.|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g 160 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG 160 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 236 NGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 236 ~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
.+..+|+++|.+.... .+++|++.++++.|+|++++.+++....++||.+.
T Consensus 161 ~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~ 212 (288)
T TIGR01692 161 AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSD 212 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHH
Confidence 9999999999988877 89999999999999999999999999888888654
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=233.77 Aligned_cols=211 Identities=21% Similarity=0.314 Sum_probs=191.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhc---CCeEEEEeCChhHHHHHhccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivv~~~p~~~~~~~~~~~~ 148 (290)
|+|||||+|+||..++++|.+.|++|.+|||++++.+.+.+.|...+.+.++++++ +|+|++++|.+..++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~--- 77 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI--- 77 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---
Confidence 47999999999999999999999999999999988888877888888899998876 699999999987888887
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 226 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~-- 226 (290)
.++.+.++++.++||+|+..+.+..++.+.+.++++.|+++|+++++.....+. .++++|+++++++++++|+.+|.
T Consensus 78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~ 156 (299)
T PRK12490 78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEG 156 (299)
T ss_pred HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcC
Confidence 356777899999999999999999999999999999999999999988887887 68899999999999999999997
Q ss_pred -cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC--CCHHHHHHHHhh-cCCCCcccc
Q 022909 227 -SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVD--FLINTVTMFLQS-FSFGNLQYD 286 (290)
Q Consensus 227 -~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G--~~~~~~~~~i~~-~~~gs~~~~ 286 (290)
.++++++.|.+..+|++.|++...+ .+++|++.++++.| +|++++.++++. ...+|+.+.
T Consensus 157 ~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~ 221 (299)
T PRK12490 157 PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLD 221 (299)
T ss_pred CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHH
Confidence 7899999999999999999998887 99999999999999 999999999996 446666553
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.7e-33 Score=244.52 Aligned_cols=178 Identities=17% Similarity=0.171 Sum_probs=155.1
Q ss_pred CeeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCC-CcccccccccccccCCCccccCCCCeEEEEcc
Q 022909 1 MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKP-LFPLSFKVFSSQATGVSAEADELPGRIGFLGM 79 (290)
Q Consensus 1 ~~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~ 79 (290)
|++-.+|+|+++ +++|++++|+|++.|+++++++.+++|.|.... ...+..+.+. ++|+||||+
T Consensus 90 I~Vtnvp~~~t~--sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~-------------gktvGIiG~ 154 (324)
T COG1052 90 ITVTNVPGYSTE--AVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLR-------------GKTLGIIGL 154 (324)
T ss_pred cEEEeCCCCCch--HHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCC-------------CCEEEEECC
Confidence 456677889999 999999999999999999999999999998653 2222224454 899999999
Q ss_pred cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCC
Q 022909 80 GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGK 159 (290)
Q Consensus 80 G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~ 159 (290)
|+||+++|++++.||++|.+|+|++. .+..++.+..+.+ +++++++||+|+++||.+++|++++ +++.++.||+++
T Consensus 155 GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLi--n~~~l~~mk~ga 230 (324)
T COG1052 155 GRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLI--NAEELAKMKPGA 230 (324)
T ss_pred CHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhc--CHHHHHhCCCCe
Confidence 99999999999999999999999986 3333344566665 9999999999999999999999999 889999999999
Q ss_pred EEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 160 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 160 ~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
++||++||+.+|+++|.++|+++.+.....+++..++.
T Consensus 231 ~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~ 268 (324)
T COG1052 231 ILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPA 268 (324)
T ss_pred EEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCC
Confidence 99999999999999999999999988888888877765
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=241.92 Aligned_cols=211 Identities=20% Similarity=0.284 Sum_probs=189.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC----CCc---cCCCHHHHhhc---CCeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAK---YQPSPDEVAAS---CDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~---~~~~~~~~~~~---aDivv~~~p~~~~ 140 (290)
.++|||||+|.||..+|++|...|++|.+|||++++.+.+.+. |.. .+.+++|+++. +|+|++++|..+.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP 85 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH
Confidence 4789999999999999999999999999999999988877653 433 56789999876 9999999999999
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHH
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 220 (290)
++.++ ..+++.+++|.++||+|+..+.++.++.+.+.++|++|+++|+++++..+..++ ++++||+++++++++++
T Consensus 86 V~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pv 161 (493)
T PLN02350 86 VDQTI---KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDI 161 (493)
T ss_pred HHHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHH
Confidence 99998 457888999999999999999999999999999999999999999999999998 78999999999999999
Q ss_pred HHHhCC------cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHH-CCCCHHHHHHHHh---hcCCCCccc
Q 022909 221 LDIMGK------SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEF-VDFLINTVTMFLQ---SFSFGNLQY 285 (290)
Q Consensus 221 l~~~G~------~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~-~G~~~~~~~~~i~---~~~~gs~~~ 285 (290)
|+.++. .++++|+.|+++++|++.|.+...+ .+++|++.++++ .|+|++++.+++. ....+|+.+
T Consensus 162 L~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~ll 237 (493)
T PLN02350 162 LEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLI 237 (493)
T ss_pred HHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHH
Confidence 999985 3889999999999999999998877 999999999998 5999999999965 444445443
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=226.78 Aligned_cols=210 Identities=23% Similarity=0.304 Sum_probs=191.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhc---CCeEEEEeCChhHHHHHhccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivv~~~p~~~~~~~~~~~~ 148 (290)
|+|||||+|.||+.+++.|...|++|.+|||++++.+.+.+.|+..+++.+++++. +|+|++++|....++.++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~--- 77 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI--- 77 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---
Confidence 47999999999999999999999999999999998888888888888899998876 699999999877888887
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 226 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~-- 226 (290)
..+.+.++++.++||+|++.+....++.+.++++++.|+++|+++++..+..+. .++++|+++++++++++|+.++.
T Consensus 78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~ 156 (301)
T PRK09599 78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRA 156 (301)
T ss_pred HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccc
Confidence 356777899999999999999999999999999999999999999988877775 78899999999999999999998
Q ss_pred --cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHH--CCCCHHHHHHHHhhcC-CCCccc
Q 022909 227 --SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEF--VDFLINTVTMFLQSFS-FGNLQY 285 (290)
Q Consensus 227 --~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~--~G~~~~~~~~~i~~~~-~gs~~~ 285 (290)
+++++|+.|++..+|++.|.+...+ .+++|++.++++ .|+|++++.++++... .+|+.+
T Consensus 157 ~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l 221 (301)
T PRK09599 157 EDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLL 221 (301)
T ss_pred cCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHH
Confidence 7899999999999999999998777 999999999999 9999999999999764 566654
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=262.00 Aligned_cols=218 Identities=20% Similarity=0.310 Sum_probs=205.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
.++||+||+|.||..+|++|.+.|++|.+|||++++.+.+.+.|...+++..|+.++||+|++++|.++.++.++++...
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g 83 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEG 83 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhh
Confidence 58899999999999999999999999999999999999999889989999999999999999999999999999876567
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcC--CcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATG--ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR 228 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~ 228 (290)
+++.+++|.++||+|+..+...+++.+.+.+++ +.|+++|+++++..+..+.+++++||+++.+++++++|+.+|..+
T Consensus 84 ~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i 163 (1378)
T PLN02858 84 AAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKL 163 (1378)
T ss_pred HHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCce
Confidence 788899999999999999999999999999998 899999999999999999999999999999999999999999988
Q ss_pred EE-eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccCC
Q 022909 229 FY-LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDGN 288 (290)
Q Consensus 229 ~~-~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~~ 288 (290)
++ +|+.|.+..+|+++|++.+.+ .+++|++.++++.|+|++.+.+++..+.++||.+..+
T Consensus 164 ~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~ 225 (1378)
T PLN02858 164 YTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNH 225 (1378)
T ss_pred EEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhh
Confidence 76 489999999999999998888 9999999999999999999999999999999987644
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=235.22 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=149.7
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+++|..++. ..+++|++++++|++.|+++.+++.+++|.|.+.... + .++. ++|+||||+|+|
T Consensus 91 ~V~nap~~n-a~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~--g-~el~-------------gkTvGIiG~G~I 153 (324)
T COG0111 91 LVVNAPGGN-AISVAELVLALLLALARRIPDADASQRRGEWDRKAFR--G-TELA-------------GKTVGIIGLGRI 153 (324)
T ss_pred EEEeCCCcc-hHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccc--c-cccc-------------CCEEEEECCCHH
Confidence 355555444 4599999999999999999999999999999862111 1 3444 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
|+.+|++++.+|++|++||+...+. .....+....+++++++++||+|++|+|.|++|++++ +++.+..||+|++||
T Consensus 154 G~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i--~~~~~a~MK~gailI 230 (324)
T COG0111 154 GRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLI--NAEELAKMKPGAILI 230 (324)
T ss_pred HHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhccc--CHHHHhhCCCCeEEE
Confidence 9999999999999999999954432 2223456667899999999999999999999999999 889999999999999
Q ss_pred EecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcccc
Q 022909 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE 199 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~ 199 (290)
|++||..+++++|.++|+++.+....-++|..||...
T Consensus 231 N~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~ 267 (324)
T COG0111 231 NAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPA 267 (324)
T ss_pred ECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCC
Confidence 9999999999999999999988877778888776543
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=232.92 Aligned_cols=207 Identities=19% Similarity=0.272 Sum_probs=188.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC----C--CccCCCHHHHhh---cCCeEEEEeCChhHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAA---SCDVTFAMLADPESAM 142 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~---~aDivv~~~p~~~~~~ 142 (290)
.+|||||+|.||..+|++|...|++|.+|||++++.+.+.+. | +..+++++++++ ++|+|++++|.++.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 479999999999999999999999999999999988777653 4 345778999887 4899999999999999
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHH
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~ 222 (290)
.++ +++.+.+++|.++||++++.+.++....+.+.++|++|+++|+++++..+..++ ++++||+++++++++++|+
T Consensus 82 ~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~ 157 (470)
T PTZ00142 82 ETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILE 157 (470)
T ss_pred HHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHH
Confidence 998 457888999999999999999999999999999999999999999999998898 7899999999999999999
Q ss_pred HhCCc------EEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHH-HCCCCHHHHHHHHhhcCCCC
Q 022909 223 IMGKS------RFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLE-FVDFLINTVTMFLQSFSFGN 282 (290)
Q Consensus 223 ~~G~~------~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~-~~G~~~~~~~~~i~~~~~gs 282 (290)
.++.+ +.++|+.|+++++|++.|.+...+ .+++|++.+++ +.|++++++.+++..|..|+
T Consensus 158 ~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~ 225 (470)
T PTZ00142 158 KCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGI 225 (470)
T ss_pred HHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCC
Confidence 99987 789999999999999999998777 99999999997 79999999999997666654
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=256.25 Aligned_cols=219 Identities=25% Similarity=0.347 Sum_probs=203.4
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+.++|||||+|+||..+|++|...|++|.+|||++++.+.+.+.|....++..++++++|+|++++|.+.+++.+++++.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 35889999999999999999999999999999999888888888877788999999999999999999999999986655
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHH--cCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCc
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS 227 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~ 227 (290)
.+++.+++|.++||+|+..+...+++.+.+.+ ++++|+++|+++++..+..+.+.++++|+++.+++++++|+.+|..
T Consensus 403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~ 482 (1378)
T PLN02858 403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEK 482 (1378)
T ss_pred hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCc
Confidence 67788999999999999999999999999998 8999999999999999999999999999999999999999999998
Q ss_pred EEE-eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccCC
Q 022909 228 RFY-LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDGN 288 (290)
Q Consensus 228 ~~~-~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~~ 288 (290)
+++ .++.|.+..+|+++|++.+.+ .+++|++.++++.|+|++++.+++..+.+.||.+.++
T Consensus 483 i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~ 545 (1378)
T PLN02858 483 LYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENR 545 (1378)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhc
Confidence 887 467999999999999998887 9999999999999999999999999999999987654
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=230.93 Aligned_cols=174 Identities=13% Similarity=0.136 Sum_probs=146.1
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCccc---ccccccccccCCCccccCCCCeEEEEc
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPL---SFKVFSSQATGVSAEADELPGRIGFLG 78 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~IgiiG 78 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|.....+.. ..+.+. +++|||||
T Consensus 88 ~v~n~~g~~~~--~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~-------------gktvGIiG 152 (311)
T PRK08410 88 AVKNVAGYSTE--SVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIK-------------GKKWGIIG 152 (311)
T ss_pred EEEcCCCCCCh--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccC-------------CCEEEEEC
Confidence 44555787777 8889999999999999999999999999975432211 012344 89999999
Q ss_pred ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCC
Q 022909 79 MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPG 158 (290)
Q Consensus 79 ~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~ 158 (290)
+|+||+.+|++++.||++|++|||+.... +.+.. ..++++++++||+|++|+|.+++|++++ +++.++.||++
T Consensus 153 ~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li--~~~~~~~Mk~~ 225 (311)
T PRK08410 153 LGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLI--AYKELKLLKDG 225 (311)
T ss_pred CCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhccc--CHHHHHhCCCC
Confidence 99999999999999999999999975321 12333 3489999999999999999999999999 88999999999
Q ss_pred CEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccc
Q 022909 159 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 159 ~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~ 198 (290)
++|||++||..+|+++|.++|+++.+. ...+++..||..
T Consensus 226 a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~ 264 (311)
T PRK08410 226 AILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPME 264 (311)
T ss_pred eEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCC
Confidence 999999999999999999999999888 777888777643
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=230.80 Aligned_cols=177 Identities=11% Similarity=0.058 Sum_probs=148.0
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|+++|+++.+++.+++|.|.......+..+++. ++++||||+|+
T Consensus 91 ~V~n~~~~~~~--~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~-------------gktvGIiG~G~ 155 (323)
T PRK15409 91 LLMHTPTVLTE--TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVH-------------HKTLGIVGMGR 155 (323)
T ss_pred EEEeCCCCCch--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCC-------------CCEEEEEcccH
Confidence 45555777777 8999999999999999999999999999974321111114455 89999999999
Q ss_pred hHHHHHHHHH-HCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCE
Q 022909 82 MGTPMAQNLL-KAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG 160 (290)
Q Consensus 82 iG~~la~~l~-~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 160 (290)
||+.+|+++. .+|++|.+|||+... +.....++.. .++++++++||+|++|+|.+++|++++ +++.++.||++++
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li--~~~~l~~mk~ga~ 231 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLF--GAEQFAKMKSSAI 231 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhcc--CHHHHhcCCCCeE
Confidence 9999999998 999999999987532 2223345554 489999999999999999999999999 8889999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 161 lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
+||++||..+++++|.++|+++.+.....+++..|+.
T Consensus 232 lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~ 268 (323)
T PRK15409 232 FINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPL 268 (323)
T ss_pred EEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCC
Confidence 9999999999999999999999888777777776654
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-30 Score=230.21 Aligned_cols=179 Identities=13% Similarity=0.088 Sum_probs=151.2
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|++..+++.+++|.|...... ...+.+. +++|||||+|+
T Consensus 146 ~V~n~~g~na~--sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~-~~~~~L~-------------gktVGIVG~G~ 209 (386)
T PLN03139 146 TVAEVTGSNVV--SVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIA-YRAYDLE-------------GKTVGTVGAGR 209 (386)
T ss_pred EEEECCCcCcH--HHHHHHHHHHHHHHcCcHHHHHHHHhCCCcccccc-CCCcCCC-------------CCEEEEEeecH
Confidence 34444555554 89999999999999999999999999999743211 1113455 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++.+|++|.+||+++...+...+.|+...+++++++++||+|++++|.+++|++++ +++.++.||+|++|
T Consensus 210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~l 287 (386)
T PLN03139 210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF--NKERIAKMKKGVLI 287 (386)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHh--CHHHHhhCCCCeEE
Confidence 9999999999999999999998654444445667667799999999999999999999999999 78899999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~ 198 (290)
||++|+.++++++|.++|+++.+.....+++..+|..
T Consensus 288 IN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp 324 (386)
T PLN03139 288 VNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAP 324 (386)
T ss_pred EECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCC
Confidence 9999999999999999999999987777888777654
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=214.31 Aligned_cols=210 Identities=21% Similarity=0.273 Sum_probs=186.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHh---hcCCeEEEEeCChhHHHHHhccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA---ASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~---~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
|+|||||+|.||..+++.|.+.|++|.+|||++++.+.+.+.+.....+++++. +++|+|++++|.. .++.++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~--- 76 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL--- 76 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---
Confidence 479999999999999999999999999999999998888887776666776654 4589999999987 888888
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 226 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~-- 226 (290)
+++.+.++++.++||++++.+.+..++.+.+.+++++|+++|+++++.....+ +.++++|++++++.++++|+.++.
T Consensus 77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~ 155 (298)
T TIGR00872 77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEE 155 (298)
T ss_pred HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcC
Confidence 45677889999999999999999999999999999999999999998888777 478999999999999999999986
Q ss_pred -cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--CCCHHHHHHHHhhcC-CCCcccc
Q 022909 227 -SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFV--DFLINTVTMFLQSFS-FGNLQYD 286 (290)
Q Consensus 227 -~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~--G~~~~~~~~~i~~~~-~gs~~~~ 286 (290)
.++++++.|.+..+|++.|.+...+ .+++|++.++++. |+|++++.++.+... .+|+.+.
T Consensus 156 ~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~ 220 (298)
T TIGR00872 156 QGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLD 220 (298)
T ss_pred CCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHH
Confidence 5789999999999999999998777 9999999999998 569999999988875 4666543
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=226.53 Aligned_cols=209 Identities=20% Similarity=0.262 Sum_probs=185.3
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----CCccCCCHHHHhh---cCCeEEEEeCChhHHHHH
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAA---SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~---~aDivv~~~p~~~~~~~~ 144 (290)
.|||||+|.||..+|++|...|++|.+|||++++.+.+.+. ++..+.+++++++ ++|+|++++|....+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 38999999999999999999999999999999988887764 2455677888764 689999999998889998
Q ss_pred hcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHh
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIM 224 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~ 224 (290)
+ +++.+.+++|.++||+++..+.++....+.+.+++++|+++|+++++..+..++ ++++||+++++++++++|+.+
T Consensus 81 i---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~i 156 (467)
T TIGR00873 81 I---NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKI 156 (467)
T ss_pred H---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHH
Confidence 8 457788999999999999999999999999999999999999999999988888 789999999999999999999
Q ss_pred CCc------EEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHH-HCCCCHHHHHHHHh---hcCCCCccc
Q 022909 225 GKS------RFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLE-FVDFLINTVTMFLQ---SFSFGNLQY 285 (290)
Q Consensus 225 G~~------~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~-~~G~~~~~~~~~i~---~~~~gs~~~ 285 (290)
+.+ +.++|+.|+++++|++.|.+...+ .+++|++.+++ +.|++++++.+++. +...+||.+
T Consensus 157 a~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~ 228 (467)
T TIGR00873 157 AAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLI 228 (467)
T ss_pred hhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHH
Confidence 876 478999999999999999997777 99999999885 79999999999995 444555543
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=229.03 Aligned_cols=178 Identities=13% Similarity=0.089 Sum_probs=149.0
Q ss_pred eeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhH
Q 022909 4 LVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMG 83 (290)
Q Consensus 4 ~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG 83 (290)
++|..+++ ..+++|++++++|++.|++..+++.+++|.|......... +.+. +++|||||+|+||
T Consensus 140 V~n~~g~~-a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~-~~L~-------------gktVGIvG~G~IG 204 (385)
T PRK07574 140 VAEVTGSN-SISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRS-YDLE-------------GMTVGIVGAGRIG 204 (385)
T ss_pred EEcCCCCc-hHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccc-eecC-------------CCEEEEECCCHHH
Confidence 45554443 2489999999999999999999999999999753211111 3444 8999999999999
Q ss_pred HHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEE
Q 022909 84 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD 163 (290)
Q Consensus 84 ~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin 163 (290)
+.+|++|+.+|++|.+|||++...+...+.++....++++++++||+|++|+|.+++|++++ +++.++.||+|++|||
T Consensus 205 ~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lIN 282 (385)
T PRK07574 205 LAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLF--DADVLSRMKRGSYLVN 282 (385)
T ss_pred HHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHh--CHHHHhcCCCCcEEEE
Confidence 99999999999999999998744333344566666789999999999999999999999999 8899999999999999
Q ss_pred ecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccc
Q 022909 164 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 164 ~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~ 198 (290)
++|+.++++++|.++|+++.+.....+++..++..
T Consensus 283 ~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp 317 (385)
T PRK07574 283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAP 317 (385)
T ss_pred CCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCC
Confidence 99999999999999999998887777777766543
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=225.06 Aligned_cols=172 Identities=15% Similarity=0.155 Sum_probs=144.9
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCccc---ccccccccccCCCccccCCCCeEEEEc
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPL---SFKVFSSQATGVSAEADELPGRIGFLG 78 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~IgiiG 78 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|.....+.. ..+++. +++|||||
T Consensus 91 ~v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~-------------gktvgIiG 155 (317)
T PRK06487 91 TVCNCQGYGTP--SVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELE-------------GKTLGLLG 155 (317)
T ss_pred EEEeCCCCCcc--hHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccC-------------CCEEEEEC
Confidence 44455777766 8999999999999999999999999999975432211 112344 89999999
Q ss_pred ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCC
Q 022909 79 MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPG 158 (290)
Q Consensus 79 ~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~ 158 (290)
+|+||+.+|++++.||++|++|++.... . ... ..++++++++||+|++|+|.+++|++++ +++.++.||+|
T Consensus 156 ~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li--~~~~~~~mk~g 226 (317)
T PRK06487 156 HGELGGAVARLAEAFGMRVLIGQLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTRHLI--GARELALMKPG 226 (317)
T ss_pred CCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHhcCc--CHHHHhcCCCC
Confidence 9999999999999999999999986431 1 122 2489999999999999999999999999 88999999999
Q ss_pred CEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 159 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 159 ~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
++|||++||..+++++|.++|+++.+.....+++..||.
T Consensus 227 a~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~ 265 (317)
T PRK06487 227 ALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPP 265 (317)
T ss_pred eEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCC
Confidence 999999999999999999999999888777788877654
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=223.76 Aligned_cols=173 Identities=12% Similarity=0.102 Sum_probs=144.6
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCccc---ccccccccccCCCccccCCCCeEEEEc
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPL---SFKVFSSQATGVSAEADELPGRIGFLG 78 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~IgiiG 78 (290)
.+.+.|+|... +++|++++++|++.|+++.+++.+++|.|.....+.. ..+++. +++|||||
T Consensus 90 ~v~n~~g~~~~--~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~-------------gktvgIiG 154 (314)
T PRK06932 90 AVKNVTGYSST--TVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVR-------------GSTLGVFG 154 (314)
T ss_pred EEEeCCCCChh--HHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccC-------------CCEEEEEC
Confidence 34455777776 8889999999999999999999999999975322111 112344 89999999
Q ss_pred ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCC
Q 022909 79 MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPG 158 (290)
Q Consensus 79 ~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~ 158 (290)
+|+||+.+|++++.||++|++|+++... .. .. ...++++++++||+|++|+|.+++|++++ +++.++.||+|
T Consensus 155 ~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li--~~~~l~~mk~g 226 (314)
T PRK06932 155 KGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLI--NAETLALMKPT 226 (314)
T ss_pred CCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhccc--CHHHHHhCCCC
Confidence 9999999999999999999999986431 11 11 13589999999999999999999999999 88999999999
Q ss_pred CEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 159 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 159 ~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
+++||++||..+++++|.++|+++.+.....+++..||.
T Consensus 227 a~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 227 AFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred eEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 999999999999999999999999888777788877664
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-29 Score=224.88 Aligned_cols=179 Identities=12% Similarity=0.041 Sum_probs=145.7
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+..+|+|... +++|++++++|++.|+++.+++.+++|.|..+.......+.+. +++|||||+|+
T Consensus 111 ~V~n~pg~~~~--~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~-------------gktvGIiG~G~ 175 (386)
T PLN02306 111 AVGNTPGVLTE--TTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLK-------------GQTVGVIGAGR 175 (386)
T ss_pred EEEECCCcCHH--HHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCC-------------CCEEEEECCCH
Confidence 45556777776 8899999999999999999999999999964322111113444 89999999999
Q ss_pred hHHHHHHHHH-HCCCeEEEEeCCccch-hhH-HhCC------------CccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 82 MGTPMAQNLL-KAGCDVTVWNRTKSKC-DPL-ISLG------------AKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 82 iG~~la~~l~-~~g~~V~~~d~~~~~~-~~~-~~~g------------~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
||+.+|+++. .||++|.+||++++.. ... ...+ .....++++++++||+|++|+|.+++|++++
T Consensus 176 IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~li- 254 (386)
T PLN02306 176 IGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLI- 254 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhc-
Confidence 9999999985 9999999999986421 111 1111 1234589999999999999999999999999
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
+++.++.||+|++|||++||..+++++|.++|+++.+.....+++..|+.
T Consensus 255 -n~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~ 304 (386)
T PLN02306 255 -NKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPY 304 (386)
T ss_pred -CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCC
Confidence 88999999999999999999999999999999998887777778776653
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=198.54 Aligned_cols=161 Identities=38% Similarity=0.670 Sum_probs=143.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~ 151 (290)
++|||||+|.||..+|++|.+.|++|.+|||++++.+++.+.|+..++++.|+++++|+|++++|.+++++.++.+.. +
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-i 80 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-I 80 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-H
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-H
Confidence 789999999999999999999999999999999999999988999999999999999999999999999999986544 8
Q ss_pred cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEe
Q 022909 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 152 ~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 231 (290)
++.+++|.++||+|+.++...+++.+.+.+++++|+++|++++++.+..+.++++++|+++++++++++|+.+|.+++++
T Consensus 81 ~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~~ 160 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYHY 160 (163)
T ss_dssp GGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEEE
T ss_pred hhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCceee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988844
Q ss_pred -CC
Q 022909 232 -GD 233 (290)
Q Consensus 232 -~~ 233 (290)
|+
T Consensus 161 ~G~ 163 (163)
T PF03446_consen 161 VGP 163 (163)
T ss_dssp -ES
T ss_pred eCc
Confidence 53
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-29 Score=205.85 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=130.6
Q ss_pred chhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHHCCCeEEEE
Q 022909 21 MSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW 100 (290)
Q Consensus 21 ~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~ 100 (290)
++++|++.|+++.+++.++++.|... .....+.+. +++|||||+|+||+.+|++++.+|++|++|
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~--~~~~~~~l~-------------g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~ 65 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASR--ERFPGRELR-------------GKTVGIIGYGRIGRAVARRLKAFGMRVIGY 65 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHH--TTTTBS-ST-------------TSEEEEESTSHHHHHHHHHHHHTT-EEEEE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCC--cCCCccccC-------------CCEEEEEEEcCCcCeEeeeeecCCceeEEe
Confidence 46777788999999999999999111 111114454 899999999999999999999999999999
Q ss_pred eCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHH
Q 022909 101 NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 180 (290)
Q Consensus 101 d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~ 180 (290)
||+........+.+.. ..++++++++||+|++|+|.+++|++++ +++.++.||+|++|||++|+..+++++|.++|+
T Consensus 66 d~~~~~~~~~~~~~~~-~~~l~ell~~aDiv~~~~plt~~T~~li--~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 66 DRSPKPEEGADEFGVE-YVSLDELLAQADIVSLHLPLTPETRGLI--NAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp ESSCHHHHHHHHTTEE-ESSHHHHHHH-SEEEE-SSSSTTTTTSB--SHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred cccCChhhhcccccce-eeehhhhcchhhhhhhhhccccccceee--eeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 9998765434555554 4599999999999999999999999999 889999999999999999999999999999999
Q ss_pred HcCCcEEeCccCCCCccc
Q 022909 181 ATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 181 ~~~~~~~~~p~~~~~~~~ 198 (290)
++.+.....+++..|+..
T Consensus 143 ~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 143 SGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp TTSEEEEEESS-SSSSSS
T ss_pred hccCceEEEECCCCCCCC
Confidence 998887777777776543
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-28 Score=226.20 Aligned_cols=172 Identities=13% Similarity=0.069 Sum_probs=146.3
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|.+... ..+++. +++|||||+|+
T Consensus 100 ~V~n~pg~~~~--aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~---~~~~L~-------------gktvGIiG~G~ 161 (409)
T PRK11790 100 PVFNAPFSNTR--SVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAA---GSFEVR-------------GKTLGIVGYGH 161 (409)
T ss_pred EEEeCCCCChH--HHHHHHHHHHHHHHcChHHHHHHHHcCccccccc---CcccCC-------------CCEEEEECCCH
Confidence 34455777777 8889999999999999999999999999975321 113455 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|+++..+|++|.+||+++... ..++....++++++++||+|++|+|.+++|++++ +++.++.||+|+++
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li--~~~~l~~mk~ga~l 235 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMI--GAEELALMKPGAIL 235 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhcc--CHHHHhcCCCCeEE
Confidence 99999999999999999999875321 1234456689999999999999999999999999 88899999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
||++||..+++++|.++|+++.+.....+++..++.
T Consensus 236 IN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~ 271 (409)
T PRK11790 236 INASRGTVVDIDALADALKSGHLAGAAIDVFPVEPK 271 (409)
T ss_pred EECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence 999999999999999999999888777777766653
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-28 Score=219.19 Aligned_cols=177 Identities=13% Similarity=0.069 Sum_probs=147.1
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCC-c---ccccccccccccCCCccccCCCCeEEEE
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPL-F---PLSFKVFSSQATGVSAEADELPGRIGFL 77 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~-~---~l~~~~~~~~~~~~~~~~~~~~~~Igii 77 (290)
.+..+|+|... +++|++++++|++.|+++.+++.+++|.|..... . ....+++. +++||||
T Consensus 92 ~v~n~~g~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~-------------gktvgIi 156 (333)
T PRK13243 92 YVTNTPGVLTE--ATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVY-------------GKTIGII 156 (333)
T ss_pred EEEECCCCChH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCC-------------CCEEEEE
Confidence 34455777666 8899999999999999999999999999974311 0 00113444 8999999
Q ss_pred cccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCC
Q 022909 78 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGP 157 (290)
Q Consensus 78 G~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~ 157 (290)
|+|+||+.+|+++..+|++|.+|||+++.. ...+.+... .++++++++||+|++|+|.+++|++++ +++.++.||+
T Consensus 157 G~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i--~~~~~~~mk~ 232 (333)
T PRK13243 157 GFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKETYHMI--NEERLKLMKP 232 (333)
T ss_pred CcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhcc--CHHHHhcCCC
Confidence 999999999999999999999999986542 223344544 489999999999999999999999999 7789999999
Q ss_pred CCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 158 ~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
|+++||+||+.++++++|.++|+++.+.....+++..|+.
T Consensus 233 ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~ 272 (333)
T PRK13243 233 TAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPY 272 (333)
T ss_pred CeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCC
Confidence 9999999999999999999999999888777778777654
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-28 Score=215.44 Aligned_cols=167 Identities=13% Similarity=0.168 Sum_probs=142.3
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+++|+++.. .+++|++++++|++.|+++.+.+.+++|.|..... +.+. +++|||||+|+|
T Consensus 74 ~~~~~g~~~--~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~-----~~L~-------------gktvgIiG~G~I 133 (303)
T PRK06436 74 LCSNAGAYS--ISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPT-----KLLY-------------NKSLGILGYGGI 133 (303)
T ss_pred EEEcCCCCc--HHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCC-----CCCC-------------CCEEEEECcCHH
Confidence 455654333 49999999999999999999999999999985322 3444 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-cCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
|+.+|++++.+|++|++|||+... .+.. ...++++++++||+|++|+|.+++|++++ +++.++.||+|+++
T Consensus 134 G~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li--~~~~l~~mk~ga~l 205 (303)
T PRK06436 134 GRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMI--NSKMLSLFRKGLAI 205 (303)
T ss_pred HHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCc--CHHHHhcCCCCeEE
Confidence 999999999999999999997532 1222 24589999999999999999999999999 78899999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
||+||+.++++++|.++|+++.+.....+++..||.
T Consensus 206 IN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~ 241 (303)
T PRK06436 206 INVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPI 241 (303)
T ss_pred EECCCccccCHHHHHHHHHcCCceEEEEccCCCCCC
Confidence 999999999999999999998787766777776653
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-28 Score=211.06 Aligned_cols=176 Identities=13% Similarity=0.123 Sum_probs=155.1
Q ss_pred CeeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEccc
Q 022909 1 MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMG 80 (290)
Q Consensus 1 ~~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G 80 (290)
++++..|.|++. |++|++++|+++++|++++....+++|.|.+.... + .++. +|++||+|+|
T Consensus 94 i~Vvn~P~~Ns~--saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~--G-~el~-------------GKTLgvlG~G 155 (406)
T KOG0068|consen 94 ILVVNTPTANSR--SAAELTIGLILSLARQIGQASASMKEGKWNRVKYL--G-WELR-------------GKTLGVLGLG 155 (406)
T ss_pred eEEEeCCCCChH--HHHHHHHHHHHHHhhhcchhheeeecCceeeccee--e-eEEe-------------ccEEEEeecc
Confidence 467788999998 99999999999999999999999999999865322 2 4566 8999999999
Q ss_pred HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCE
Q 022909 81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG 160 (290)
Q Consensus 81 ~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 160 (290)
+||+.+|+++..+|++|+.||+-.. .+.....|++.. +++|++..+|+|.+|+|.+++|++++ +++.+..||+|..
T Consensus 156 rIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~li--n~~tfA~mKkGVr 231 (406)
T KOG0068|consen 156 RIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLL--NDETFAKMKKGVR 231 (406)
T ss_pred cchHHHHHHHHhcCceEEeecCCCc-hHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhcc--CHHHHHHhhCCcE
Confidence 9999999999999999999998653 345566788876 89999999999999999999999999 8889999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccc
Q 022909 161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 161 lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~ 198 (290)
+||++||+++|+.+|.++++++.+.-...+++..|+..
T Consensus 232 iIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~ 269 (406)
T KOG0068|consen 232 IINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPK 269 (406)
T ss_pred EEEecCCceechHHHHHHHhcCcccceeeecccCCCCc
Confidence 99999999999999999999987776666777766654
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-28 Score=214.84 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=139.5
Q ss_pred cccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHH
Q 022909 13 FLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLK 92 (290)
Q Consensus 13 ~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~ 92 (290)
..+++|++++++|++.|+++.+.+.++++.|...... .+. ++||||||+|+||+.+|++|.+
T Consensus 96 ~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~-----~l~-------------g~tvgIvG~G~IG~~vA~~l~a 157 (312)
T PRK15469 96 GEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEY-----HRE-------------DFTIGILGAGVLGSKVAQSLQT 157 (312)
T ss_pred cHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCC-----CcC-------------CCEEEEECCCHHHHHHHHHHHH
Confidence 3488999999999999999999999999999743222 333 8999999999999999999999
Q ss_pred CCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHH
Q 022909 93 AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 172 (290)
Q Consensus 93 ~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~ 172 (290)
+|++|.+||+++++...... .....++++++++||+|++++|.+++|++++ +++.++.||+|+++||++||..+++
T Consensus 158 fG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde 233 (312)
T PRK15469 158 WGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGII--NQQLLEQLPDGAYLLNLARGVHVVE 233 (312)
T ss_pred CCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHh--HHHHHhcCCCCcEEEECCCccccCH
Confidence 99999999997654322111 1224589999999999999999999999999 7889999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 173 KLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 173 ~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
++|.++|+++.+.....+++..|+.
T Consensus 234 ~aL~~aL~~g~i~gaalDVf~~EPl 258 (312)
T PRK15469 234 DDLLAALDSGKVKGAMLDVFSREPL 258 (312)
T ss_pred HHHHHHHhcCCeeeEEecCCCCCCC
Confidence 9999999999888777788776654
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-28 Score=217.22 Aligned_cols=174 Identities=13% Similarity=0.032 Sum_probs=144.2
Q ss_pred eeeeccccc-ccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 3 LLVKSSYSH-RFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 3 ~~~~~~y~~-~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
+...|+|++ ...+++|++++++|++.|+++.+.+.+++|.|.... . +.+. +++|||||+|+
T Consensus 108 v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~----~-~~l~-------------gktvGIiG~G~ 169 (347)
T PLN02928 108 VARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPI----G-DTLF-------------GKTVFILGYGA 169 (347)
T ss_pred EEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccccc----c-cCCC-------------CCEEEEECCCH
Confidence 334455543 556899999999999999999999999999996421 1 3444 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhH------------HhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPL------------ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~------------~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
||+.+|++++.+|++|++|||+..+.... ..... ...++++++++||+|++|+|.+++|++++ ++
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li--~~ 246 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIV--ND 246 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhccc--CH
Confidence 99999999999999999999974321111 00112 34589999999999999999999999999 88
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
+.++.||+|++|||++||..+++++|.++|+++.+.....+++..|+.
T Consensus 247 ~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~ 294 (347)
T PLN02928 247 EFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPF 294 (347)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCC
Confidence 999999999999999999999999999999999888777788876664
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=211.09 Aligned_cols=197 Identities=22% Similarity=0.279 Sum_probs=180.4
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----CCccCCCHHHHhhc---CCeEEEEeCChhHHHHHhcccccccc
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGKHGAAS 153 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDivv~~~p~~~~~~~~~~~~~~~~~ 153 (290)
||+.+|++|...|++|.+|||++++.+.+.+. ++..+.+++++++. +|+|++++|..+.++.++ .++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence 79999999999999999999999998888763 47788899999875 899999999999999998 45788
Q ss_pred cCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcE-----
Q 022909 154 GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR----- 228 (290)
Q Consensus 154 ~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~----- 228 (290)
.+.+|.++||.++..+.++.+..+.++++|++|+++|+++++..+..++ ++++||+++++++++++|+.++.++
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~ 156 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEP 156 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCC
Confidence 8999999999999999999999999999999999999999999998998 7899999999999999999999876
Q ss_pred --EEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHH-HCCCCHHHHHHHHhhcCCCC
Q 022909 229 --FYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLE-FVDFLINTVTMFLQSFSFGN 282 (290)
Q Consensus 229 --~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~-~~G~~~~~~~~~i~~~~~gs 282 (290)
.++|+.|+++++|++.|.+...+ .+++|++.+++ +.|++++++.+++..|..|+
T Consensus 157 c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~ 214 (459)
T PRK09287 157 CVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGE 214 (459)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCC
Confidence 89999999999999999998777 99999999999 58999999999996554443
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=226.33 Aligned_cols=174 Identities=13% Similarity=0.115 Sum_probs=148.0
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+...|+|... +++|++++++|+++|+++.+++.+++|.|.+... .. +++. +++|||||+|+|
T Consensus 88 V~n~pg~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~--~g-~~l~-------------gktvgIiG~G~I 149 (525)
T TIGR01327 88 VVNAPTGNTI--SAAEHALAMLLAAARNIPQADASLKEGEWDRKAF--MG-TELY-------------GKTLGVIGLGRI 149 (525)
T ss_pred EEeCCCcChH--HHHHHHHHHHHHHhcCHHHHHHHHHcCCcccccc--Cc-cccC-------------CCEEEEECCCHH
Confidence 4444666665 8999999999999999999999999999974321 11 3455 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
|+.+|++++.+|++|.+||++... +...+.++...+++++++++||+|++|+|.+++|++++ +++.++.||+++++|
T Consensus 150 G~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lI 226 (525)
T TIGR01327 150 GSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLI--GAEELAKMKKGVIIV 226 (525)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc--CHHHHhcCCCCeEEE
Confidence 999999999999999999986432 33344566666789999999999999999999999999 788999999999999
Q ss_pred EecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
|++|+..+++++|.++|+++.+.....+++..||.
T Consensus 227 N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~ 261 (525)
T TIGR01327 227 NCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP 261 (525)
T ss_pred EcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC
Confidence 99999999999999999999888777777776653
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-27 Score=212.63 Aligned_cols=172 Identities=12% Similarity=0.110 Sum_probs=146.2
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|++. +++|++++++|++.|+++.+++.+++|.|.+... ...+.+. +++|||||+|+
T Consensus 94 ~v~n~~~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~--~~~~~l~-------------g~~VgIIG~G~ 156 (330)
T PRK12480 94 VISNVPSYSPE--TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE--IMSKPVK-------------NMTVAIIGTGR 156 (330)
T ss_pred EEEeCCCCChH--HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccc--cCccccC-------------CCEEEEECCCH
Confidence 45556889888 8888999999999999999999999997742211 1113444 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++|+.+|++|.+||++++..... .....++++++++||+|++|+|.++++++++ +++.++.|++|+++
T Consensus 157 IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li--~~~~l~~mk~gavl 230 (330)
T PRK12480 157 IGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLF--DKAMFDHVKKGAIL 230 (330)
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHH--hHHHHhcCCCCcEE
Confidence 99999999999999999999987543221 3345689999999999999999999999999 78899999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
||++||..+++++|.++|+++.+.....+++..|+
T Consensus 231 IN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP 265 (330)
T PRK12480 231 VNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEA 265 (330)
T ss_pred EEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCC
Confidence 99999999999999999999988888888887776
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-27 Score=222.42 Aligned_cols=173 Identities=14% Similarity=0.169 Sum_probs=147.0
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+...|+|... +++|++++++|+++|+++.+++.+++|.|..... .. +.+. +++|||||+|+|
T Consensus 90 V~n~p~~~~~--~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~--~g-~~l~-------------gktvgIiG~G~I 151 (526)
T PRK13581 90 VVNAPTGNTI--SAAEHTIALMLALARNIPQAHASLKAGKWERKKF--MG-VELY-------------GKTLGIIGLGRI 151 (526)
T ss_pred EEeCCCCChH--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCc--cc-cccC-------------CCEEEEECCCHH
Confidence 3344666665 8999999999999999999999999999975321 11 3455 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
|+.+|++++.+|++|.+|||+... +...+.++... ++++++++||+|++|+|.+++|++++ +++.++.||+++++|
T Consensus 152 G~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li--~~~~l~~mk~ga~lI 227 (526)
T PRK13581 152 GSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLI--GAEELAKMKPGVRII 227 (526)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCc--CHHHHhcCCCCeEEE
Confidence 999999999999999999997532 33344566666 89999999999999999999999999 788999999999999
Q ss_pred EecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
|++|+.++++++|.++|+++.+.....+++..||.
T Consensus 228 N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~ 262 (526)
T PRK13581 228 NCARGGIIDEAALAEALKSGKVAGAALDVFEKEPP 262 (526)
T ss_pred ECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCC
Confidence 99999999999999999999887777777776653
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=202.62 Aligned_cols=166 Identities=15% Similarity=0.102 Sum_probs=145.2
Q ss_pred ccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHHC
Q 022909 14 LSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKA 93 (290)
Q Consensus 14 ~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~~ 93 (290)
.++|+++++++|.+.|++..+++++++|.|.....+.+. ..+. ++||||+|+|+||+.+|++|.+|
T Consensus 119 ~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g-~~~~-------------gK~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 119 DDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLG-YDLE-------------GKTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCcccc-cccc-------------CCEEEEecCcHHHHHHHHhhhhc
Confidence 488999999999999999999999999999433333333 3333 89999999999999999999999
Q ss_pred CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHH
Q 022909 94 GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSK 173 (290)
Q Consensus 94 g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~ 173 (290)
|+.+.+++|++...+...+.+.. ..+.++++.++|+|++|+|.+++|++++ +++.+.+||++.++||++||...+++
T Consensus 185 g~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~li--Nk~~~~~mk~g~vlVN~aRG~iide~ 261 (336)
T KOG0069|consen 185 GCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLI--NKKFIEKMKDGAVLVNTARGAIIDEE 261 (336)
T ss_pred cceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHh--hHHHHHhcCCCeEEEeccccccccHH
Confidence 98888888988776666665555 4589999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEeCccCCCCc
Q 022909 174 LINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 174 ~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
++.++|+++.+.-.+-+++..++
T Consensus 262 ~l~eaL~sG~i~~aGlDVf~~EP 284 (336)
T KOG0069|consen 262 ALVEALKSGKIAGAGLDVFEPEP 284 (336)
T ss_pred HHHHHHhcCCcccccccccCCCC
Confidence 99999999988777777887776
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-26 Score=203.11 Aligned_cols=173 Identities=10% Similarity=0.089 Sum_probs=144.4
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|+.. +++|++++++|++.|+++.+++.+++|.|.+... +..+++. +++|||||+|+
T Consensus 94 ~v~n~~~~~~~--~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~--~~~~~l~-------------g~~VgIIG~G~ 156 (332)
T PRK08605 94 IISNVPSYSPE--SIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPP--ILSRSIK-------------DLKVAVIGTGR 156 (332)
T ss_pred EEEeCCCCChH--HHHHHHHHHHHHHhcChHHHHHHHHhCCcccccc--cccceeC-------------CCEEEEECCCH
Confidence 44556788777 8999999999999999999999999998853221 1114555 89999999999
Q ss_pred hHHHHHHHH-HHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCE
Q 022909 82 MGTPMAQNL-LKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG 160 (290)
Q Consensus 82 iG~~la~~l-~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 160 (290)
||+.+|++| ..+|++|.+||+++... .. ..+....++++++++||+|++|+|.++.+++++ +++.++.|++|++
T Consensus 157 IG~~vA~~L~~~~g~~V~~~d~~~~~~--~~-~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li--~~~~l~~mk~gai 231 (332)
T PRK08605 157 IGLAVAKIFAKGYGSDVVAYDPFPNAK--AA-TYVDYKDTIEEAVEGADIVTLHMPATKYNHYLF--NADLFKHFKKGAV 231 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccHh--HH-hhccccCCHHHHHHhCCEEEEeCCCCcchhhhc--CHHHHhcCCCCcE
Confidence 999999999 67899999999986532 11 234455689999999999999999999999988 6778999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 161 lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
+||+||+..+++++|.++|+++.+.....+++..|+
T Consensus 232 lIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep 267 (332)
T PRK08605 232 FVNCARGSLVDTKALLDALDNGLIKGAALDTYEFER 267 (332)
T ss_pred EEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCC
Confidence 999999999999999999999988877777777664
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-24 Score=174.31 Aligned_cols=206 Identities=23% Similarity=0.333 Sum_probs=180.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhh---cCCeEEEEeCChhHHHHHhccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA---SCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~---~aDivv~~~p~~~~~~~~~~~~ 148 (290)
|+||+||+|+||..+.+++...|++|.+||++++..++++..++..+++++++++ ...+|.+.+|....|..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi--- 77 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI--- 77 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---
Confidence 5799999999999999999999999999999999999999988888889888876 4789999999988888888
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 226 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~-- 226 (290)
+++.+.|.+|.++|+-++....|.....+.+.+++++|+++..+++......+. +++++|++++++.++++|+.+..
T Consensus 78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge 156 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGE 156 (300)
T ss_pred HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCc
Confidence 678889999999999999999999999999999999999999999988776665 67999999999999999999854
Q ss_pred -cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCC
Q 022909 227 -SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGN 282 (290)
Q Consensus 227 -~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs 282 (290)
..-++++.|+++++|++.|.+...+ ++++|.+.+.++..+|.+ +.++..-|..||
T Consensus 157 ~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D-~~~VA~vW~hGS 213 (300)
T COG1023 157 DGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYD-LEAVAEVWNHGS 213 (300)
T ss_pred CccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHhCcc
Confidence 4568999999999999999997776 999999999998877654 444444444443
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=192.38 Aligned_cols=205 Identities=18% Similarity=0.132 Sum_probs=163.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-------------------CC-CccCCCHHHHhhcCCeE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT 131 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv 131 (290)
|+|+|||+|.||..+|..|+..|++|++||+++++.+.+.+ .| +...++.+++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 47999999999999999999999999999999887766543 12 45566788889999999
Q ss_pred EEEeCChhH---------HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc--CC------cEEeCccCCC
Q 022909 132 FAMLADPES---------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GA------SFLEAPVSGS 194 (290)
Q Consensus 132 v~~~p~~~~---------~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~--~~------~~~~~p~~~~ 194 (290)
++++|.+.. +...+ +.+.+.+++++++|+.|+..+...+.+.+.+.+. +. .+..+|.+..
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence 999998643 44443 4456778999999999999999988887544332 22 2344554443
Q ss_pred Ccccc---CCceEEEecCCHHHHHHHHHHHHHhC-CcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHH
Q 022909 195 KKPAE---DGQLIFLAAGDKSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLIN 269 (290)
Q Consensus 195 ~~~~~---~~~~~~~~~~~~~~~~~v~~ll~~~G-~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~ 269 (290)
+.... ..+..+++|++++..+.++++++.++ ..++++++.+.++..|++.|.+.+.. ..++|+..+|++.|+|++
T Consensus 158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~ 237 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVY 237 (411)
T ss_pred CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 32221 12226778889999999999999998 57888999999999999999999888 999999999999999999
Q ss_pred HHHHHHhhcC
Q 022909 270 TVTMFLQSFS 279 (290)
Q Consensus 270 ~~~~~i~~~~ 279 (290)
++.+++....
T Consensus 238 ~v~~~~~~~~ 247 (411)
T TIGR03026 238 EVIEAAGTDP 247 (411)
T ss_pred HHHHHhCCCC
Confidence 9999998653
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-22 Score=182.75 Aligned_cols=206 Identities=14% Similarity=0.080 Sum_probs=161.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc-CCCHHHH---------------hhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QPSPDEV---------------AASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~~~~~~---------------~~~aDivv~~ 134 (290)
.++|+|||+|.||..+|..|+..|++|++||+++++.+.+....... ...++++ ++++|+|++|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 38899999999999999999999999999999998887754322211 1233333 2379999999
Q ss_pred eCCh---------hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCC--------------cEEeCc-
Q 022909 135 LADP---------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA--------------SFLEAP- 190 (290)
Q Consensus 135 ~p~~---------~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~--------------~~~~~p- 190 (290)
+|.+ ..+...+ +.+.+.+++|+++|+.|+.++...+.+...+.+.+. .++.+|
T Consensus 83 vptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE 159 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPE 159 (415)
T ss_pred cCCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCC
Confidence 9986 3444444 456778899999999999999999999887776432 245567
Q ss_pred -cCCCCccccCCceEEEecC-CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Q 022909 191 -VSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFL 267 (290)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~ 267 (290)
+..+........+..+++| +++..+.++++++.++..++++++.+.++..|++.|.+.+.. ..++|+..+|++.|+|
T Consensus 160 ~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD 239 (415)
T PRK11064 160 RVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGIN 239 (415)
T ss_pred ccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3333322222223344566 889999999999999988888999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHhhcC
Q 022909 268 INTVTMFLQSFS 279 (290)
Q Consensus 268 ~~~~~~~i~~~~ 279 (290)
++++.+++..-.
T Consensus 240 ~~~v~~~~~~~~ 251 (415)
T PRK11064 240 VWELIRLANRHP 251 (415)
T ss_pred HHHHHHHhccCC
Confidence 999999987543
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=189.56 Aligned_cols=152 Identities=11% Similarity=0.085 Sum_probs=123.7
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+...|+|... +++|+++++++.+.|+. | + .+. +++|||||+|+|
T Consensus 84 v~napg~na~--aVAE~~~~~lL~l~r~~---------g-------~-----~L~-------------gktvGIIG~G~I 127 (378)
T PRK15438 84 FSAAPGCNAI--AVVEYVFSSLLMLAERD---------G-------F-----SLH-------------DRTVGIVGVGNV 127 (378)
T ss_pred EEECCCcCch--HHHHHHHHHHHHHhccC---------C-------C-----CcC-------------CCEEEEECcCHH
Confidence 3444555555 88899999988888851 1 1 222 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhH----HHHHhcccccccccCCCC
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES----AMDVACGKHGAASGMGPG 158 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~----~~~~~~~~~~~~~~~~~~ 158 (290)
|+.+|+++.++|++|.+||+..... .... ...++++++++||+|++|+|.+++ |.+++ +++.++.||+|
T Consensus 128 G~~vA~~l~a~G~~V~~~dp~~~~~----~~~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li--~~~~l~~mk~g 200 (378)
T PRK15438 128 GRRLQARLEALGIKTLLCDPPRADR----GDEG-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLA--DEKLIRSLKPG 200 (378)
T ss_pred HHHHHHHHHHCCCEEEEECCccccc----cccc-ccCCHHHHHhhCCEEEEeCCCCCCccccccccc--CHHHHhcCCCC
Confidence 9999999999999999999754321 1111 245899999999999999999885 99999 88899999999
Q ss_pred CEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 159 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 159 ~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
+++||++||.++++++|.++|+++.+.....+++..||.
T Consensus 201 ailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~ 239 (378)
T PRK15438 201 AILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE 239 (378)
T ss_pred cEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 999999999999999999999998877666677766653
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=179.64 Aligned_cols=206 Identities=15% Similarity=0.135 Sum_probs=160.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc----------------cCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK----------------YQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~----------------~~~~~~~~~~~aDivv~~ 134 (290)
.|+|||||+|.||..+|..|+. |++|++||+++++.+.+.+ |.. .+++..+.+++||++++|
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~-G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~ 83 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKN-GVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT 83 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHC-cCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence 5899999999999999999877 6999999999999888773 221 223334568899999999
Q ss_pred eCCh------hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc--CCcEEe------CccCC--CCccc
Q 022909 135 LADP------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLE------APVSG--SKKPA 198 (290)
Q Consensus 135 ~p~~------~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~--~~~~~~------~p~~~--~~~~~ 198 (290)
+|++ .+++.++...+.+.+.+++|.++|+.|+..+..++++.+.+.+. |+.+.+ +|.+. +....
T Consensus 84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~ 163 (425)
T PRK15182 84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKH 163 (425)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccc
Confidence 9987 45566665556677889999999999999999998765544332 444332 33322 22221
Q ss_pred c-CCceEEEecCCHHHHHHHHHHHHHhC-CcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHH
Q 022909 199 E-DGQLIFLAAGDKSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFL 275 (290)
Q Consensus 199 ~-~~~~~~~~~~~~~~~~~v~~ll~~~G-~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i 275 (290)
. .....++.|.+++..+.++++++.+. ..++++++.+.|+..|+++|.+.+.. ..++|+..+|++.|+|.+++.+++
T Consensus 164 ~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~ 243 (425)
T PRK15182 164 RLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAA 243 (425)
T ss_pred cccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHh
Confidence 1 22334667777888889999999985 34678899999999999999999999 999999999999999999999996
Q ss_pred hhc
Q 022909 276 QSF 278 (290)
Q Consensus 276 ~~~ 278 (290)
..-
T Consensus 244 ~~~ 246 (425)
T PRK15182 244 GSK 246 (425)
T ss_pred cCC
Confidence 543
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-23 Score=185.87 Aligned_cols=153 Identities=12% Similarity=0.112 Sum_probs=124.2
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|+++++++++.|+. . +.+. +++|||||+|+
T Consensus 83 ~v~napg~na~--aVAE~v~~~lL~l~r~~------------g---------~~l~-------------gktvGIIG~G~ 126 (381)
T PRK00257 83 TWSSAPGCNAR--GVVDYVLGSLLTLAERE------------G---------VDLA-------------ERTYGVVGAGH 126 (381)
T ss_pred EEEECCCcChH--HHHHHHHHHHHHHhccc------------C---------CCcC-------------cCEEEEECCCH
Confidence 34445666666 78888888888877751 1 1233 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChh----HHHHHhcccccccccCCC
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE----SAMDVACGKHGAASGMGP 157 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~----~~~~~~~~~~~~~~~~~~ 157 (290)
||+.+|+++.++|++|++||+..... + +.....++++++++||+|++|+|.++ .|++++ +++.+..||+
T Consensus 127 IG~~va~~l~a~G~~V~~~Dp~~~~~----~-~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li--~~~~l~~mk~ 199 (381)
T PRK00257 127 VGGRLVRVLRGLGWKVLVCDPPRQEA----E-GDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLL--DEAFLASLRP 199 (381)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc----c-cCccccCHHHHHhhCCEEEEeCcCCCCccccccccC--CHHHHhcCCC
Confidence 99999999999999999999864321 1 12234589999999999999999987 699999 8889999999
Q ss_pred CCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 158 ~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
|+++||+|||.++++++|.++|+++.+.....+++..||.
T Consensus 200 gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~ 239 (381)
T PRK00257 200 GAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ 239 (381)
T ss_pred CeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC
Confidence 9999999999999999999999998777666667766553
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=172.25 Aligned_cols=204 Identities=11% Similarity=0.144 Sum_probs=156.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-----------HhCC-------------CccCCCHHHHhhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAAS 127 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~ 127 (290)
++|+|||+|.||..+|..|+..|++|++||++++..+.. .+.| +..+.++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 689999999999999999999999999999998765542 2233 2466788889999
Q ss_pred CCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEe
Q 022909 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA 207 (290)
Q Consensus 128 aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 207 (290)
+|+|+.++|...+.+..++ .++.+..+++.++ .. +.+.....++.+.+...+..+.++|+.+... .+++.++
T Consensus 83 ad~Vi~avpe~~~~k~~~~--~~l~~~~~~~~ii-~s-sts~~~~~~la~~~~~~~~~~~~hp~~p~~~----~~lveiv 154 (308)
T PRK06129 83 ADYVQESAPENLELKRALF--AELDALAPPHAIL-AS-STSALLASAFTEHLAGRERCLVAHPINPPYL----IPVVEVV 154 (308)
T ss_pred CCEEEECCcCCHHHHHHHH--HHHHHhCCCcceE-EE-eCCCCCHHHHHHhcCCcccEEEEecCCCccc----CceEEEe
Confidence 9999999998766655552 2233334445444 33 3334456678887776677788899865321 1355566
Q ss_pred c---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCcc
Q 022909 208 A---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQ 284 (290)
Q Consensus 208 ~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~ 284 (290)
+ ++++.++.+.++++.+|+.++++++.+.+.. ++++. ...++|++.++++.|++++++++++....+.+|.
T Consensus 155 ~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i---~nrl~---~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~ 228 (308)
T PRK06129 155 PAPWTAPATLARAEALYRAAGQSPVRLRREIDGFV---LNRLQ---GALLREAFRLVADGVASVDDIDAVIRDGLGLRWS 228 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHH---HHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcc
Confidence 5 7889999999999999999999987777753 33321 2777999999999999999999999999999999
Q ss_pred ccCCC
Q 022909 285 YDGNF 289 (290)
Q Consensus 285 ~~~~~ 289 (290)
+.|+|
T Consensus 229 ~~gp~ 233 (308)
T PRK06129 229 FMGPF 233 (308)
T ss_pred CcCHH
Confidence 98876
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=183.26 Aligned_cols=203 Identities=14% Similarity=0.077 Sum_probs=158.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-------------------CC-CccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDi 130 (290)
-++|+|||+|.||..+|..|...|++|++||+++++.+.+.+ .+ +..++++++++++||+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 478999999999999999999999999999999887654321 12 5667889899999999
Q ss_pred EEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCC
Q 022909 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD 210 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 210 (290)
|++++|...+.+..++ +++.+.++++++ |.+|+.++. ...+.+.+.+.+..++.+|+... ...+++.+++++
T Consensus 84 Vieavpe~~~vk~~l~--~~l~~~~~~~~i-I~SsTsgi~-~s~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~ 155 (495)
T PRK07531 84 IQESVPERLDLKRRVL--AEIDAAARPDAL-IGSSTSGFL-PSDLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGG 155 (495)
T ss_pred EEEcCcCCHHHHHHHH--HHHHhhCCCCcE-EEEcCCCCC-HHHHHhhcCCcceEEEEecCCCc----ccCceEEEcCCC
Confidence 9999999888777653 234455677765 455454443 33667777666777888887632 234567777775
Q ss_pred ---HHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 211 ---KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS--CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 211 ---~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~--~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
++.++.+.++++.+|+.+++++. .+.|++.+.+ ..++|++.++++.|++++++++++....+.+|.+
T Consensus 156 ~t~~e~~~~~~~~~~~lG~~~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~ 227 (495)
T PRK07531 156 KTSPETIRRAKEILREIGMKPVHIAK--------EIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQ 227 (495)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccc
Confidence 78999999999999999999874 3334443333 4469999999999999999999999999999999
Q ss_pred cCCC
Q 022909 286 DGNF 289 (290)
Q Consensus 286 ~~~~ 289 (290)
.|+|
T Consensus 228 ~Gpf 231 (495)
T PRK07531 228 MGLF 231 (495)
T ss_pred cchH
Confidence 9987
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-22 Score=178.30 Aligned_cols=210 Identities=16% Similarity=0.114 Sum_probs=164.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------C------CccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------G------AKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------g------~~~~~~~~~~~~~aDivv~~~p 136 (290)
.|+|+|||+|.||..+|..|...|++|.+|+|++++.+.+.+. + +..+++++++++++|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 5799999999999999999999999999999998776666542 2 3355688888899999999998
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEecCC-ChhH--HHHHHHHHHH---cCCcEEeCccCCCCccccCCceEEEecCC
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDT--SKLINGHIKA---TGASFLEAPVSGSKKPAEDGQLIFLAAGD 210 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~-~~~~--~~~l~~~l~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 210 (290)
.. .++.++ +.++++.++|+++++ .+.+ .+.+.+.+.+ .++.++..|....+.....+.+.++.+++
T Consensus 84 ~~-~~~~v~-------~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~ 155 (328)
T PRK14618 84 SK-ALRETL-------AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPE 155 (328)
T ss_pred hH-HHHHHH-------HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCC
Confidence 75 455554 456788899999885 4333 4566666665 56677777776655444556677788899
Q ss_pred HHHHHHHHHHHHHhCCcEEEe--------CC---------cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHH
Q 022909 211 KSLYNTVAPLLDIMGKSRFYL--------GD---------VGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVT 272 (290)
Q Consensus 211 ~~~~~~v~~ll~~~G~~~~~~--------~~---------~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~ 272 (290)
++.++.++++|+..|.+++.. +. .|.+..+|+..|...+++ .++.|+..++++.|++++++.
T Consensus 156 ~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~ 235 (328)
T PRK14618 156 PGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFY 235 (328)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchh
Confidence 999999999999999888742 22 366667788888888888 999999999999999999999
Q ss_pred HHHhh----cCCCCccccCC
Q 022909 273 MFLQS----FSFGNLQYDGN 288 (290)
Q Consensus 273 ~~i~~----~~~gs~~~~~~ 288 (290)
+++.. ....|+...++
T Consensus 236 ~~~~~gDl~~t~~s~~~rn~ 255 (328)
T PRK14618 236 GLSGLGDLIATATSPHSRNR 255 (328)
T ss_pred cCcchhheeeEeccCCCccH
Confidence 99775 35556655554
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=172.49 Aligned_cols=201 Identities=14% Similarity=0.075 Sum_probs=155.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh----------------CCCcc--CCCHHHHhhcCCeEEE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----------------LGAKY--QPSPDEVAASCDVTFA 133 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----------------~g~~~--~~~~~~~~~~aDivv~ 133 (290)
|+|+|||+|.||..+|..++. |++|++||+++++.+.+.+ .+... ..+..++++++|+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 479999999999999977764 9999999999998877654 12222 2346677899999999
Q ss_pred EeCCh----------hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccc---cC
Q 022909 134 MLADP----------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA---ED 200 (290)
Q Consensus 134 ~~p~~----------~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~---~~ 200 (290)
++|.+ ..++.++ +++.+ ++++.++|+.|+.++...+.+.+.+.+.++.+ .|.+-.+... ..
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~--~PE~l~~G~a~~d~~ 153 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF--SPEFLREGKALYDNL 153 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE--CcccccCCccccccc
Confidence 99987 3444444 33444 68999999999999999999998887655443 5554332221 22
Q ss_pred CceEEEecCCHHHHHHHHHHHHH--hCCcEE-EeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHh
Q 022909 201 GQLIFLAAGDKSLYNTVAPLLDI--MGKSRF-YLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQ 276 (290)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~ll~~--~G~~~~-~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~ 276 (290)
.+..++.|++++..+.+.+++.. ++..+. ++++.+.|+..|++.|.+.+.. +.++|...+|++.|+|.+++.+++.
T Consensus 154 ~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~ 233 (388)
T PRK15057 154 HPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVC 233 (388)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence 33367888887778888888854 454443 6899999999999999999999 9999999999999999999999997
Q ss_pred hcC
Q 022909 277 SFS 279 (290)
Q Consensus 277 ~~~ 279 (290)
.=.
T Consensus 234 ~d~ 236 (388)
T PRK15057 234 LDP 236 (388)
T ss_pred CCC
Confidence 544
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-21 Score=166.71 Aligned_cols=209 Identities=22% Similarity=0.310 Sum_probs=181.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----CCccCCCHHHHhh---cCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAA---SCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~---~aDivv~~~p~~~~~~ 142 (290)
...||+||+|.||+.+|.....+|++|.+|+|++++.+++-+. .+..+.+++|++. ...-|++.+.....+.
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD 82 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD 82 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence 5789999999999999999999999999999999998877652 3556667887754 5677888876655556
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHH
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~ 222 (290)
.++ +++++.|.+|.++||-++....|+..-.++|.+.|++|+++.+++++..+..+|. ++.||++++.+.++++|.
T Consensus 83 ~~I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-iMpGG~~eay~~v~pil~ 158 (473)
T COG0362 83 AVI---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-IMPGGQKEAYELVAPILT 158 (473)
T ss_pred HHH---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-cCCCCCHHHHHHHHHHHH
Confidence 776 5678999999999999999999999999999999999999999999999988884 699999999999999999
Q ss_pred HhCC------cEEEeCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHH-CCCCHHHHHHHHhhcCCCCc
Q 022909 223 IMGK------SRFYLGDVGNGAAMKLVVNMIMGR-SCTFSYSFLTLEF-VDFLINTVTMFLQSFSFGNL 283 (290)
Q Consensus 223 ~~G~------~~~~~~~~g~a~~~k~~~n~~~~~-~~~~~ea~~l~~~-~G~~~~~~~~~i~~~~~gs~ 283 (290)
.+.. -+.++|+.|.++++|++.|.+... |+.++|++.+.+. .|++.+++.+++..|.+|-.
T Consensus 159 ~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL 227 (473)
T COG0362 159 KIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGEL 227 (473)
T ss_pred HHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcc
Confidence 8842 245689999999999999999665 4999999998876 99999999999999988754
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=163.23 Aligned_cols=202 Identities=19% Similarity=0.182 Sum_probs=143.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC----eEEEE-eCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVW-NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~----~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
|||+|||+|+||.++++.|.+.|+ +|++| +|++++.+.+.+.|+....+..++++++|+|++++| ++.++.++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 579999999999999999999998 89999 999888877777888888888999999999999996 67788887
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhC
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMG 225 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G 225 (290)
.++.+.+++++++|++..+. ..+.+.+.+... +++. +|+.+.........++...+.+++.++.++++|+.+|
T Consensus 79 --~~l~~~~~~~~~iIs~~~g~--~~~~l~~~~~~~--~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G 152 (266)
T PLN02688 79 --TELRPLLSKDKLLVSVAAGI--TLADLQEWAGGR--RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVG 152 (266)
T ss_pred --HHHHhhcCCCCEEEEecCCC--cHHHHHHHcCCC--CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 34556678899988775443 344444444322 5664 6665433222211222222347788999999999999
Q ss_pred CcEEEeCCcchHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 226 KSRFYLGDVGNGAAMKLVVN---MIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 226 ~~~~~~~~~g~a~~~k~~~n---~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
. ++++++.....+...... ++...+.++.|+ +++.|++++++.+++.+++.|++.+
T Consensus 153 ~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l 211 (266)
T PLN02688 153 K-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKM 211 (266)
T ss_pred C-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9 878755222222211111 122222444555 7999999999999999999999874
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-20 Score=166.50 Aligned_cols=201 Identities=18% Similarity=0.163 Sum_probs=152.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------------CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
|+|+|||+|.||..++..|...|++|.+|+|++++.+.+.+. ++....+.+++++++|+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 689999999999999999999999999999998877766654 244556788888999999999986
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEec-CCChhHHHHHHHHHHHc-----CCcEEeCccCCCCccccCCceEEEecCCH
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVS-TVDGDTSKLINGHIKAT-----GASFLEAPVSGSKKPAEDGQLIFLAAGDK 211 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s-~~~~~~~~~l~~~l~~~-----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 211 (290)
..++.++ +++.+.+++++++|+++ +..+...+.+.+.+.+. ...++..|....+.........++.+++.
T Consensus 82 -~~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 82 -QALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred -HHHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 5677777 34566778899999997 43433333444444442 33455566654433334445566777788
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCc-----------------chHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHH
Q 022909 212 SLYNTVAPLLDIMGKSRFYLGDV-----------------GNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTM 273 (290)
Q Consensus 212 ~~~~~v~~ll~~~G~~~~~~~~~-----------------g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~ 273 (290)
+.++.+.++|+..|..+++..+. |.+...|+..|...+++ .++.|++.++++.|+|++++.+
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~ 237 (325)
T PRK00094 158 ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLG 237 (325)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhc
Confidence 99999999999999877766553 44444677778887777 9999999999999999999988
Q ss_pred HHh
Q 022909 274 FLQ 276 (290)
Q Consensus 274 ~i~ 276 (290)
++.
T Consensus 238 ~~~ 240 (325)
T PRK00094 238 LAG 240 (325)
T ss_pred ccH
Confidence 754
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=159.45 Aligned_cols=205 Identities=10% Similarity=0.070 Sum_probs=150.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------C---------CCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L---------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~---------g~~~~~~~~~~~~~aDi 130 (290)
-++|+|||+|.||..+|..++..|++|.+||++++..+...+ . .+...+++++++++||+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 478999999999999999999999999999999875443211 1 23556789899999999
Q ss_pred EEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEec--
Q 022909 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA-- 208 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-- 208 (290)
|+.++|.+.+++..++ +++.+.++++++ |.++++ .....++.+.++.. -+++....+.++.. -+++-++.
T Consensus 87 ViEavpE~l~vK~~lf--~~l~~~~~~~aI-laSnTS-~l~~s~la~~~~~p-~R~~g~HffnP~~~---~pLVEVv~g~ 158 (321)
T PRK07066 87 IQESAPEREALKLELH--ERISRAAKPDAI-IASSTS-GLLPTDFYARATHP-ERCVVGHPFNPVYL---LPLVEVLGGE 158 (321)
T ss_pred EEECCcCCHHHHHHHH--HHHHHhCCCCeE-EEECCC-ccCHHHHHHhcCCc-ccEEEEecCCcccc---CceEEEeCCC
Confidence 9999999999998884 456677888885 444444 34555676666543 33444222332221 13344443
Q ss_pred -CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccC
Q 022909 209 -GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDG 287 (290)
Q Consensus 209 -~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~ 287 (290)
.+++.++.+.++++.+|+.++.+...-.+....-+.. ..+.|++.+.++...++++++.++...++-.|.+.|
T Consensus 159 ~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~------a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~G 232 (321)
T PRK07066 159 RTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLE------ALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMG 232 (321)
T ss_pred CCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHH------HHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcC
Confidence 3679999999999999999998853223333222211 567999999999889999999999999999999999
Q ss_pred CC
Q 022909 288 NF 289 (290)
Q Consensus 288 ~~ 289 (290)
+|
T Consensus 233 pf 234 (321)
T PRK07066 233 TF 234 (321)
T ss_pred HH
Confidence 87
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=157.39 Aligned_cols=205 Identities=13% Similarity=0.149 Sum_probs=147.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC----eEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~----~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
.++|+|||+|+||.++++.|...|+ +|+++||++++.+.+.+ .|+..+.+..+++++||+|++++| ++.+..++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH
Confidence 5789999999999999999998874 69999999988777765 677777788889999999999998 58888887
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecC--CHHHHHHHHHHHH
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLD 222 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~ll~ 222 (290)
+++.+.+++++++|++..| ++.+.|.+.+... .+++. +|+... ..+.+...+..+. +++..+.++++|+
T Consensus 81 ---~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~~~-~~vvR~MPN~~~--~vg~g~t~~~~~~~~~~~~~~~v~~lf~ 152 (272)
T PRK12491 81 ---NQIKDQIKNDVIVVTIAAG--KSIKSTENEFDRK-LKVIRVMPNTPV--LVGEGMSALCFNEMVTEKDIKEVLNIFN 152 (272)
T ss_pred ---HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcCCC-CcEEEECCChHH--HHcCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 4455667888999988544 4555676766432 23444 676532 3344544444332 4567889999999
Q ss_pred HhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 223 IMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 223 ~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
.+|.. +.+.+.....+. .+...--++++.+.|++ ..+.+.|++++++.+++.+++.|+..+.
T Consensus 153 ~~G~~-~~~~E~~~d~~t-alsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll 215 (272)
T PRK12491 153 IFGQT-EVVNEKLMDVVT-SISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMV 215 (272)
T ss_pred cCCCE-EEEcHHHhhhHH-HhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99995 455532222222 12221223335556666 6789999999999999999999987653
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-18 Score=152.30 Aligned_cols=195 Identities=13% Similarity=0.121 Sum_probs=150.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcc-----chhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCC
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKS-----KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGP 157 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~-----~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~ 157 (290)
|..+|..|...|++|++|||+++ +.+.+.+.|+..+++..++++++|+|++++|....++.++ .++.+.+++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~ 108 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA---KNILPHLPE 108 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH---HHHHhhCCC
Confidence 78899999999999999999886 3344556788878888899999999999999866588887 456788899
Q ss_pred CCEEEEecCCChhHH-HHHHHHHHHc----CCcEEe-CccCCCCccccCCceEEEecC--------CHHHHHHHHHHHHH
Q 022909 158 GKGYVDVSTVDGDTS-KLINGHIKAT----GASFLE-APVSGSKKPAEDGQLIFLAAG--------DKSLYNTVAPLLDI 223 (290)
Q Consensus 158 ~~~lin~s~~~~~~~-~~l~~~l~~~----~~~~~~-~p~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~ll~~ 223 (290)
++++||+|++++... +.+.+.+... ++.+.+ .++.+. ..+.+.++.++ +++.+++++++++.
T Consensus 109 g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Ga----e~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a 184 (342)
T PRK12557 109 NAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGT----PQHGHYVIAGKTTNGTELATEEQIEKCVELAES 184 (342)
T ss_pred CCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccccc----ccchheEEeCCCcccccCCCHHHHHHHHHHHHH
Confidence 999999999988876 5666666422 333332 222222 23333445443 78889999999999
Q ss_pred hCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHH-HHHHhhcCCCCccc
Q 022909 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTV-TMFLQSFSFGNLQY 285 (290)
Q Consensus 224 ~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~-~~~i~~~~~gs~~~ 285 (290)
+|+++++++ .+.+...|.+.|++.+.. .+.+|++.++++.|.+++++ .+++.++..|+..+
T Consensus 185 ~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~l 247 (342)
T PRK12557 185 IGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMASL 247 (342)
T ss_pred cCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 999887777 589999999999999998 99999999999999887655 45566666665544
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-18 Score=157.69 Aligned_cols=200 Identities=20% Similarity=0.282 Sum_probs=154.9
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-HhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
|+|+||| +|.||..+++.|...|++|.+|+|++++.... .+.|+....+.++.++++|+|++++|. ..+..++ +
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl---~ 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI---K 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH---H
Confidence 5799997 89999999999999999999999998765333 345776677888889999999999987 5566776 4
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecC---CHHHHHHHHHHHHHhC
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG---DKSLYNTVAPLLDIMG 225 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~ll~~~G 225 (290)
++.+.++++++++++++......+.+.+.++ .+..|++ +|++++......+..++++++ +++.++.++++++.+|
T Consensus 77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G 155 (437)
T PRK08655 77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEG 155 (437)
T ss_pred HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 5677889999999999988877777777654 3677887 699987655556666666654 4678899999999999
Q ss_pred CcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcC
Q 022909 226 KSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFS 279 (290)
Q Consensus 226 ~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~ 279 (290)
.+++.+++..+...+..++.+.+....++..+ +.+.|++.++...+....+
T Consensus 156 ~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~---l~~~g~~~~~~~~~a~~~f 206 (437)
T PRK08655 156 ARVIVTSPEEHDRIMSVVQGLTHFAYISIAST---LKRLGVDIKESRKFASPIY 206 (437)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCHHHHHhhcChhh
Confidence 99998988888888766666655444444444 3677888887665554443
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=148.33 Aligned_cols=201 Identities=18% Similarity=0.208 Sum_probs=147.4
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC----CeEEEEeCCccchhhHH-hCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLI-SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g----~~V~~~d~~~~~~~~~~-~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
++|||||+|+||++++..|.+.| .+|++.+|++++...+. ++|+..+++.++++.++|+|++++ +|+....++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~~~vl- 79 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDLEEVL- 79 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhHHHHH-
Confidence 78999999999999999999998 58999999998876444 477766778889999999999999 668888887
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI 223 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~~ 223 (290)
.++.. ..+++++|++.. .+..+.|.+.+. +.+++. +|+.... ...+...+..+ .+++..+.+.++|+.
T Consensus 80 --~~l~~-~~~~~lvISiaA--Gv~~~~l~~~l~--~~~vvR~MPNt~a~--vg~g~t~i~~~~~~~~~~~~~v~~l~~~ 150 (266)
T COG0345 80 --SKLKP-LTKDKLVISIAA--GVSIETLERLLG--GLRVVRVMPNTPAL--VGAGVTAISANANVSEEDKAFVEALLSA 150 (266)
T ss_pred --HHhhc-ccCCCEEEEEeC--CCCHHHHHHHcC--CCceEEeCCChHHH--HcCcceeeecCccCCHHHHHHHHHHHHh
Confidence 33334 668999998854 455567777776 456655 6765433 33444443433 356888899999999
Q ss_pred hCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 224 ~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+|..+ .+++.....+. .++..--++++.+.|++ ..+.+.|++++++++++.+++.|+..+
T Consensus 151 ~G~v~-~v~E~~~da~T-aisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakl 211 (266)
T COG0345 151 VGKVV-EVEESLMDAVT-ALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKL 211 (266)
T ss_pred cCCeE-EechHHhhHHH-HHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99955 45543222222 22222233346667877 678999999999999999999998754
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=152.00 Aligned_cols=188 Identities=15% Similarity=0.163 Sum_probs=139.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------C-------------CCccCCCHHHHhhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAAS 127 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~ 127 (290)
++|+|||+|.||..+|..|+..|++|++||+++++.+.+.+ . ++..++++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 57999999999999999999999999999999887665432 0 13346688889999
Q ss_pred CCeEEEEeCChhHHHHHhcccccccccCCCCCEE-EEecCCChhHHHHHHHHHHH----cCCcEEeCccCCCCccccCCc
Q 022909 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQ 202 (290)
Q Consensus 128 aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l-in~s~~~~~~~~~l~~~l~~----~~~~~~~~p~~~~~~~~~~~~ 202 (290)
+|+|++|+|.+.+++..++ .++.+.+++++++ +|+|+..+.. +.+.++. .+++|+ .|+.. .+
T Consensus 82 aD~Vi~avpe~~~~k~~~~--~~l~~~~~~~~il~~~tSt~~~~~---l~~~~~~~~r~~g~h~~-~Pv~~-------~~ 148 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVF--ETADAHAPAECYIATNTSTMSPTE---IASFTKRPERVIAMHFF-NPVHK-------MK 148 (288)
T ss_pred CCEEEEeccCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcccEEEEecC-CCccc-------Cc
Confidence 9999999999887776653 3456678889876 7888877654 4444432 244454 44432 35
Q ss_pred eEEEecC---CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhc
Q 022909 203 LIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSF 278 (290)
Q Consensus 203 ~~~~~~~---~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~ 278 (290)
++.++++ ++++++.+.++++.+|+.++++++.. + ++.|- +. ..++|++.+.++...++++++.++...
T Consensus 149 Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~-G----f~~nR---l~~~~~~ea~~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 149 LVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFP-G----FVTSR---ISALVGNEAFYMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcc-c----HHHHH---HHHHHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 6778887 88999999999999999999998622 1 22221 11 456899888877668899999998765
Q ss_pred CC
Q 022909 279 SF 280 (290)
Q Consensus 279 ~~ 280 (290)
++
T Consensus 221 ~g 222 (288)
T PRK09260 221 LN 222 (288)
T ss_pred CC
Confidence 54
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-18 Score=146.99 Aligned_cols=196 Identities=15% Similarity=0.267 Sum_probs=142.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHhCCCc-cCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
|+|+|||+|.||..+++.|...|+ +|.+||+++++.+.+.+.|+. ...+.+++. ++|+||+++|. ..+..++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~-~~~~~~~--- 75 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPV-DAIIEIL--- 75 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcH-HHHHHHH---
Confidence 479999999999999999999885 789999998877777666653 345677765 59999999986 4556666
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCC----ccc----cCCceEEEec---CCHHHHHH
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSK----KPA----EDGQLIFLAA---GDKSLYNT 216 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~----~~~----~~~~~~~~~~---~~~~~~~~ 216 (290)
+++.+ ++++++++++++......+.+.+. .+..|++ +|+.+.+ ... ..+..+++++ .+++.++.
T Consensus 76 ~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~ 151 (275)
T PRK08507 76 PKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQER 151 (275)
T ss_pred HHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHH
Confidence 34566 889999999877654444333322 2346777 6997643 211 2455666665 35678899
Q ss_pred HHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCC
Q 022909 217 VAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSF 280 (290)
Q Consensus 217 v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~ 280 (290)
+.++++.+|.+++++++.+++..+++++++.+.+..++.+++. .+.+.+.+.++....+.
T Consensus 152 v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~----~~~~~~~~~~~~~~gfr 211 (275)
T PRK08507 152 AKEIFSGLGMRIVYMDAKEHDLHAAYISHLPHIISFALANTVL----KEEDERNIFDLAGGGFR 211 (275)
T ss_pred HHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHH----hcCChHHHHhhcccchh
Confidence 9999999999999999999999999999998755566666651 35566665555544433
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-18 Score=161.37 Aligned_cols=187 Identities=18% Similarity=0.258 Sum_probs=146.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-----------HhCC-------------CccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~ 126 (290)
-++|||||+|.||..||..++..|++|++||++++..+.. .+.| +..++++++ +.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~ 85 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LA 85 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hC
Confidence 4789999999999999999999999999999999876653 3334 456677766 56
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEE-EEecCCChhHHHHHHHHHHH----cCCcEEe-CccCCCCccccC
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKA----TGASFLE-APVSGSKKPAED 200 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l-in~s~~~~~~~~~l~~~l~~----~~~~~~~-~p~~~~~~~~~~ 200 (290)
+||+||.++|.+.+++..+++ ++-..+++++++ .|+|+.++. ++...+.. .|+||++ +|++
T Consensus 86 ~aDlViEav~E~~~vK~~vf~--~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~-------- 152 (507)
T PRK08268 86 DCDLVVEAIVERLDVKQALFA--QLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM-------- 152 (507)
T ss_pred CCCEEEEcCcccHHHHHHHHH--HHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC--------
Confidence 999999999999999988853 344556789988 588887775 45555543 2667777 4554
Q ss_pred CceEEEecC---CHHHHHHHHHHHHHhCCcEEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Q 022909 201 GQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQ 276 (290)
Q Consensus 201 ~~~~~~~~~---~~~~~~~v~~ll~~~G~~~~~~~~-~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~ 276 (290)
+++.++++ ++++++.+.++++.+|+.++++++ .| ++.|-+. ...++|++.++++.|.+++++++++.
T Consensus 153 -~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll--~~~~~Ea~~l~~~g~~~~~~iD~al~ 223 (507)
T PRK08268 153 -KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAA--RPYYTEALRVLEEGVADPATIDAILR 223 (507)
T ss_pred -eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHH--HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35666664 789999999999999999999986 45 2333221 14679999999999999999999998
Q ss_pred hcCC
Q 022909 277 SFSF 280 (290)
Q Consensus 277 ~~~~ 280 (290)
..++
T Consensus 224 ~~~G 227 (507)
T PRK08268 224 EAAG 227 (507)
T ss_pred hcCC
Confidence 7665
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=153.08 Aligned_cols=201 Identities=13% Similarity=0.158 Sum_probs=135.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC----CeEEEEeCCcc-chhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS-KCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g----~~V~~~d~~~~-~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
.|+|+|||+|+||.++++.|...| .+|.+++|+++ +.+.+.+ .|+....+..++++++|+|++++|. +....+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHHHH
Confidence 579999999999999999999987 78999999764 4455544 4777777888899999999999975 666776
Q ss_pred hcccccccccCCCCCEEEEe-cCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecCC---HHHHHHHHH
Q 022909 145 ACGKHGAASGMGPGKGYVDV-STVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAGD---KSLYNTVAP 219 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~-s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~ 219 (290)
+ +++.+.+++++++|++ ++..+. .+.+.+. .+..++. +|++. ......++++++++ ++.++.+++
T Consensus 82 l---~~l~~~~~~~~liIs~~aGi~~~---~l~~~~~-~~~~v~r~mPn~~---~~~~~~~t~~~~~~~~~~~~~~~v~~ 151 (279)
T PRK07679 82 L---IPFKEYIHNNQLIISLLAGVSTH---SIRNLLQ-KDVPIIRAMPNTS---AAILKSATAISPSKHATAEHIQTAKA 151 (279)
T ss_pred H---HHHHhhcCCCCEEEEECCCCCHH---HHHHHcC-CCCeEEEECCCHH---HHHhcccEEEeeCCCCCHHHHHHHHH
Confidence 6 3455667788999997 444433 3444432 2333443 45422 12223334555554 568899999
Q ss_pred HHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCcc
Q 022909 220 LLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQ 284 (290)
Q Consensus 220 ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~ 284 (290)
+|+.+|..+ .+.+.....+...... -.+++..+.|++ ..+++.|++++++.+++.+++.|+..
T Consensus 152 l~~~~G~~~-~v~e~~~~~~~a~~Gs-gpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~ 215 (279)
T PRK07679 152 LFETIGLVS-VVEEEDMHAVTALSGS-GPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAE 215 (279)
T ss_pred HHHhCCcEE-EeCHHHhhhHHHhhcC-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999855 4432111000111100 011125555666 36899999999999999999998844
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=148.73 Aligned_cols=203 Identities=13% Similarity=0.109 Sum_probs=140.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----C--------------CccCCCHHHHhhcCCeE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----G--------------AKYQPSPDEVAASCDVT 131 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g--------------~~~~~~~~~~~~~aDiv 131 (290)
.++|+|||+|.||..+|..|+..|++|++||+++++.+.+.+. + +...++.+++++++|+|
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV 83 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV 83 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence 4789999999999999999999999999999998776554331 1 23456788888999999
Q ss_pred EEEeCChhHH-HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecC
Q 022909 132 FAMLADPESA-MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG 209 (290)
Q Consensus 132 v~~~p~~~~~-~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~ 209 (290)
++++|...+. ..++ .++....+++++++..+.+.. ..++.+.+.. ..+++. +|.. ++. . ..++.++.+
T Consensus 84 i~av~~~~~~~~~v~---~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~-~~~~ig~h~~~-p~~-~--~~l~~i~~g 153 (311)
T PRK06130 84 IEAVPEKLELKRDVF---ARLDGLCDPDTIFATNTSGLP--ITAIAQAVTR-PERFVGTHFFT-PAD-V--IPLVEVVRG 153 (311)
T ss_pred EEeccCcHHHHHHHH---HHHHHhCCCCcEEEECCCCCC--HHHHHhhcCC-cccEEEEccCC-CCc-c--CceEEEeCC
Confidence 9999987654 4444 233445666766654433322 3466666543 233444 3322 221 1 123344444
Q ss_pred ---CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 210 ---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 210 ---~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
+++.++.+.++++.+|+.+++++....+. ++++++. ..++|++.++++.|++++++++++....+-.+...
T Consensus 154 ~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~~---~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~ 227 (311)
T PRK06130 154 DKTSPQTVATTMALLRSIGKRPVLVKKDIPGF---IANRIQH---ALAREAISLLEKGVASAEDIDEVVKWSLGIRLALT 227 (311)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc---HHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCC
Confidence 57899999999999999999887432232 4444432 55799999999999999999999988777655556
Q ss_pred CCC
Q 022909 287 GNF 289 (290)
Q Consensus 287 ~~~ 289 (290)
|+|
T Consensus 228 Gp~ 230 (311)
T PRK06130 228 GPL 230 (311)
T ss_pred CHH
Confidence 665
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-18 Score=159.89 Aligned_cols=187 Identities=14% Similarity=0.117 Sum_probs=142.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-----------HhCC-------------CccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~ 126 (290)
-++|+|||+|.||..||..++..|++|.+||++++..+.. .+.| +..++++++ +.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 4789999999999999999999999999999998876542 2223 345677765 57
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE-EecCCChhHHHHHHHHHHH----cCCcEEe-CccCCCCccccC
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLE-APVSGSKKPAED 200 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li-n~s~~~~~~~~~l~~~l~~----~~~~~~~-~p~~~~~~~~~~ 200 (290)
+||+||.++|.+.+++..+++ ++-...++++++. |+|+.++. ++.+.+.+ .|+||++ +|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~--~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~-------- 150 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFA--QLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVM-------- 150 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHH--HHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccC--------
Confidence 999999999999999888743 3445577777765 55555543 45555543 3567776 4544
Q ss_pred CceEEEecC---CHHHHHHHHHHHHHhCCcEEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Q 022909 201 GQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQ 276 (290)
Q Consensus 201 ~~~~~~~~~---~~~~~~~v~~ll~~~G~~~~~~~~-~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~ 276 (290)
+++.++++ +++.++.+.++++.+|+.++++++ .|. +.++++. ..+.|++.++++.+++++++++++.
T Consensus 151 -~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrl~~---~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 151 -ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVNRVAR---PYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred -ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35677777 889999999999999999999986 442 2222222 5679999999999999999999998
Q ss_pred hcCC
Q 022909 277 SFSF 280 (290)
Q Consensus 277 ~~~~ 280 (290)
..++
T Consensus 222 ~~~G 225 (503)
T TIGR02279 222 DGAG 225 (503)
T ss_pred hcCC
Confidence 7655
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=153.53 Aligned_cols=184 Identities=20% Similarity=0.197 Sum_probs=136.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+|+|+|||+|.||+++|+.|...|++|.+|+|++. .+++++++++|+|++++|. ..++.++ ++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~---~~ 66 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA---EQ 66 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH---HH
Confidence 68999999999999999999999999999999853 3677889999999999998 5778877 33
Q ss_pred ccc-cCCCCCEEEEecC-CChhHHHHHHHHHHHcCCcEEeCccC--CCC-----ccccCCceEEEecCCHHHHHHHHHHH
Q 022909 151 AAS-GMGPGKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVS--GSK-----KPAEDGQLIFLAAGDKSLYNTVAPLL 221 (290)
Q Consensus 151 ~~~-~~~~~~~lin~s~-~~~~~~~~l~~~l~~~~~~~~~~p~~--~~~-----~~~~~~~~~~~~~~~~~~~~~v~~ll 221 (290)
+.. .+++++++|++++ ..+.....+.+.+... +.++|+. .++ ........+++++++.+..+.++++|
T Consensus 67 l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~---~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll 143 (308)
T PRK14619 67 VQALNLPPETIIVTATKGLDPETTRTPSQIWQAA---FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIF 143 (308)
T ss_pred HHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHH---cCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHh
Confidence 333 3678999999886 3333333333333322 2233432 221 11233456778889999999999999
Q ss_pred HHhCCcEEEeCCc---chHHHH--------------HHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHH
Q 022909 222 DIMGKSRFYLGDV---GNGAAM--------------KLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMF 274 (290)
Q Consensus 222 ~~~G~~~~~~~~~---g~a~~~--------------k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~ 274 (290)
+..+.+++..++. ..+..+ ++..|...+.+ .++.|++.++++.|++++++.++
T Consensus 144 ~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~ 214 (308)
T PRK14619 144 SSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL 214 (308)
T ss_pred CCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccc
Confidence 9999888876662 222233 36678877777 99999999999999999999874
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-17 Score=145.54 Aligned_cols=210 Identities=15% Similarity=0.118 Sum_probs=148.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHh-hcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|||+|.||+.+++.|.+.|++|.+|++++. .+...+.|+....+.++++ .++|+|++|+|. ..+..++ +
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl---~ 110 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVL---R 110 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHH---H
Confidence 68999999999999999999999999999999864 2334446776677888876 479999999986 5678877 3
Q ss_pred cc-cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc--ccCCceEEEec-------CCHHHHHHHH
Q 022909 150 GA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--AEDGQLIFLAA-------GDKSLYNTVA 218 (290)
Q Consensus 150 ~~-~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~--~~~~~~~~~~~-------~~~~~~~~v~ 218 (290)
++ ...++++++++|+++++....+.+.+.+.. +..|+. +|+++.+.. ...+...++.. .+++..+.+.
T Consensus 111 ~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 189 (304)
T PLN02256 111 SLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFL 189 (304)
T ss_pred hhhhhccCCCCEEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHH
Confidence 34 456889999999999887777777776643 456777 899998753 22333333332 2567889999
Q ss_pred HHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 219 PLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 219 ~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
++++.+|.+++.+....+...+..++.+-+.+-.++.+.. .-..-.|-..+++.+++.....+++.+|
T Consensus 190 ~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~~L~~~~~~~~~~~~~gfrd~tria~r~~~~~p~lw 258 (304)
T PLN02256 190 DIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGRILGKMELESTPINTKGYETLLRLVENTSSDSFDLY 258 (304)
T ss_pred HHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHHHHHHcCCcccccccccHHHHHHHHHhhcCCCHHHH
Confidence 9999999999999988888887766655443323332221 0012223346666666665555555443
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-18 Score=146.76 Aligned_cols=198 Identities=18% Similarity=0.172 Sum_probs=139.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCe---EEEEeCCccchhhHHhC--CCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCD---VTVWNRTKSKCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~---V~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
|+|||||+|+||+++++.|...|++ +.+|+|++++.+.+.+. +...+.+.+++++++|+|++++| ++....++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl- 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL- 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 4799999999999999999988853 57899998887776653 46667788899999999999998 57778877
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK 226 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~ 226 (290)
+++ .+++++++|+++ .....+.+.+.++.....+..+|+.... ...+. +.++.++ +.++++|+.+|.
T Consensus 79 --~~l--~~~~~~~vis~~--ag~~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~-t~~~~~~----~~~~~l~~~lG~ 145 (258)
T PRK06476 79 --RAL--RFRPGQTVISVI--AATDRAALLEWIGHDVKLVRAIPLPFVA--ERKGV-TAIYPPD----PFVAALFDALGT 145 (258)
T ss_pred --HHh--ccCCCCEEEEEC--CCCCHHHHHHHhCCCCCEEEECCCChhh--hCCCC-eEecCCH----HHHHHHHHhcCC
Confidence 222 256888999875 4566667777775444455567874322 22333 3344332 589999999999
Q ss_pred cEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 227 SRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 227 ~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
.++...+.....+..+ ......++..+.++..++++.|++++++.+++.+++.|+..+
T Consensus 146 ~~~~~~e~~~d~~~a~-~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l 203 (258)
T PRK06476 146 AVECDSEEEYDLLAAA-SALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQD 203 (258)
T ss_pred cEEECChHhccceeeh-hccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 7763323222222111 122222225556666899999999999999999999998766
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=150.57 Aligned_cols=179 Identities=13% Similarity=0.204 Sum_probs=139.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
.++|+||| +|.||..+|+.|...|++|.+||+++. ++.+++++++|+|++|+|... +..++ +
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~-~~~~~---~ 160 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL-TEEVI---A 160 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH-HHHHH---H
Confidence 58999999 999999999999999999999998631 256678899999999999854 56666 3
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecC-CHHHHHHHHHHHHHhCCc
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGKS 227 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~ll~~~G~~ 227 (290)
++.+ ++++++++|+++.+.....++.+.+. ..|++ ||++|++.....+..++++++ ++++++.+.++++.+|.+
T Consensus 161 ~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~ 236 (374)
T PRK11199 161 RLPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGAR 236 (374)
T ss_pred HHhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCE
Confidence 4555 89999999999988766666665432 25884 999998776666666667666 557889999999999999
Q ss_pred EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q 022909 228 RFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTM 273 (290)
Q Consensus 228 ~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~ 273 (290)
++++++.+++..+++++.+.+. .+++++..+++ .+.+.+.+.+
T Consensus 237 v~~~~~~~HD~~~a~vshLpH~--~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 237 LHRISAVEHDQNMAFIQALRHF--ATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred EEECCHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-cCCCHHHHHH
Confidence 9999999999999999855222 44455555555 6777666533
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.7e-18 Score=145.10 Aligned_cols=208 Identities=18% Similarity=0.282 Sum_probs=180.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh---CC--CccCCCHHHHhh---cCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS---LG--AKYQPSPDEVAA---SCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~---~g--~~~~~~~~~~~~---~aDivv~~~p~~~~~~ 142 (290)
...||+||++-||+.++......|+.|.+|+|+..+.+++.+ .| +....|++|++. ....|++.+.....+.
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD 85 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD 85 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence 478999999999999999999999999999999988877654 22 444568888764 5788888887777777
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHH
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~ 222 (290)
.++ +++.+.|.+|.+|||-++....++..-.+.+.++|+-|+++.+++++..+..++. ++.|+++++...++++|.
T Consensus 86 ~~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-lMpGg~~~Awp~ik~ifq 161 (487)
T KOG2653|consen 86 QFI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-LMPGGSKEAWPHIKDIFQ 161 (487)
T ss_pred HHH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc-cCCCCChHHHHHHHHHHH
Confidence 777 6788999999999999999999999999999999999999999999999988885 589999999999999998
Q ss_pred HhCC-------cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHH-CCCCHHHHHHHHhhcCCCC
Q 022909 223 IMGK-------SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEF-VDFLINTVTMFLQSFSFGN 282 (290)
Q Consensus 223 ~~G~-------~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~-~G~~~~~~~~~i~~~~~gs 282 (290)
.+.. -..++++.|++++.|++.|.+...- +.++|++.+..+ .|++.+++.+++.+|.+|-
T Consensus 162 ~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~ge 230 (487)
T KOG2653|consen 162 KIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGE 230 (487)
T ss_pred HHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccc
Confidence 7632 2456899999999999999996664 999999998887 9999999999999998874
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=146.97 Aligned_cols=172 Identities=18% Similarity=0.263 Sum_probs=130.1
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-cCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
|+|+|||+|.||..++..|...|++|.+||++++..+.+.+.|.. ...+..+.++++|+|++|+|. ..+..++ ++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~-~~~~~~~---~~ 76 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPI-GLLLPPS---EQ 76 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCH-HHHHHHH---HH
Confidence 479999999999999999999999999999998877777666542 222333567899999999986 4445555 45
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccc--------cCCceEEEec---CCHHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPA--------EDGQLIFLAA---GDKSLYNTVA 218 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~--------~~~~~~~~~~---~~~~~~~~v~ 218 (290)
+.+.++++.+++|+++.+....+.+. +....|++ ||+++++... ..+...+++. ++++.++.++
T Consensus 77 l~~~l~~~~ii~d~~Svk~~~~~~~~----~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~ 152 (279)
T PRK07417 77 LIPALPPEAIVTDVGSVKAPIVEAWE----KLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVE 152 (279)
T ss_pred HHHhCCCCcEEEeCcchHHHHHHHHH----HhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHH
Confidence 66778899999999887765443333 22335777 8999876321 2344444443 4678899999
Q ss_pred HHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH
Q 022909 219 PLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS 251 (290)
Q Consensus 219 ~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~ 251 (290)
++++.+|..++++++.+++..+++++++...+.
T Consensus 153 ~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a 185 (279)
T PRK07417 153 ELAVSLGSKIYTADPEEHDRAVALISHLPVMVS 185 (279)
T ss_pred HHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHH
Confidence 999999999999999999999999988775554
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=145.05 Aligned_cols=202 Identities=16% Similarity=0.153 Sum_probs=139.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC---CeEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g---~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
+++|+|||+|.||..+++.|...| .+|.+++|++++.+.+.+ .++....+.+++++++|+|++++|. ..++.++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~- 79 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVL- 79 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHH-
Confidence 578999999999999999999988 789999999888777766 3777777888889999999999975 5677776
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI 223 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~~ 223 (290)
+++.+.+ ++++|+++.+-. .+.+.+.+. .+.+++. +|... .....+...+..+ .++++++.++++++.
T Consensus 80 --~~l~~~~--~~~vvs~~~gi~--~~~l~~~~~-~~~~iv~~~P~~p--~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~ 150 (267)
T PRK11880 80 --SELKGQL--DKLVVSIAAGVT--LARLERLLG-ADLPVVRAMPNTP--ALVGAGMTALTANALVSAEDRELVENLLSA 150 (267)
T ss_pred --HHHHhhc--CCEEEEecCCCC--HHHHHHhcC-CCCcEEEecCCch--HHHcCceEEEecCCCCCHHHHHHHHHHHHh
Confidence 3333434 467888866553 345555543 2345554 56432 2223333333433 367889999999999
Q ss_pred hCCcEEEeC-CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 224 MGKSRFYLG-DVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 224 ~G~~~~~~~-~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+|..+ .+. +.....+..+..+. .++...+.|++ ..+.+.|++++++.+++.+++.|+..+
T Consensus 151 lG~~~-~~~~e~~~d~~~a~~~~~-pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~ 212 (267)
T PRK11880 151 FGKVV-WVDDEKQMDAVTAVSGSG-PAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKL 212 (267)
T ss_pred CCeEE-EECChHhcchHHHHhcCh-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99844 555 33333333333322 22223445555 567889999999999999999887654
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=147.86 Aligned_cols=209 Identities=16% Similarity=0.117 Sum_probs=161.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHhC-------------------CCccCCCHHHHhhcCCe
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISL-------------------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~aDi 130 (290)
|+|+|||+|.+|..+|..|+.. |++|+++|.++++.+.+.+. .+.++++.++.++++|+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 7899999999999999999987 58899999999887775432 13345667778899999
Q ss_pred EEEEeCChh-----------HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc--C--CcEEeCccCCCC
Q 022909 131 TFAMLADPE-----------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--G--ASFLEAPVSGSK 195 (290)
Q Consensus 131 vv~~~p~~~-----------~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~--~--~~~~~~p~~~~~ 195 (290)
+++|+|++. +...+....+++.+.++++.++|.-|+..+..++.+.+.+.+. + .++..+|.+-.+
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~~ 161 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAE 161 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccCC
Confidence 999998654 2223332235567788999999999999999999998888763 2 345668877655
Q ss_pred ccc---cCCceEEEecCC-----HHHHHHHHHHHHHhC-CcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC
Q 022909 196 KPA---EDGQLIFLAAGD-----KSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVD 265 (290)
Q Consensus 196 ~~~---~~~~~~~~~~~~-----~~~~~~v~~ll~~~G-~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G 265 (290)
..+ ...+..+++|+. +++.+.++++++.+- ..++.+.+...|++.|++.|.+.++. +.++|...+|++.|
T Consensus 162 G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~g 241 (473)
T PLN02353 162 GTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241 (473)
T ss_pred CCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 433 223334555543 345788899999885 24667788999999999999999999 88899999999999
Q ss_pred CCHHHHHHHHhhcCC
Q 022909 266 FLINTVTMFLQSFSF 280 (290)
Q Consensus 266 ~~~~~~~~~i~~~~~ 280 (290)
+|..++.++++.-..
T Consensus 242 iD~~eV~~~~~~d~r 256 (473)
T PLN02353 242 ADVSQVSHAVGKDSR 256 (473)
T ss_pred CCHHHHHHHhCCCCc
Confidence 999999999886543
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-17 Score=144.57 Aligned_cols=189 Identities=16% Similarity=0.195 Sum_probs=134.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhh-----------HHhCC-------------CccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~ 126 (290)
.++|+|||+|.||..+|..++..|++|.+||+++++.+. +.+.| ....++. +.++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 478999999999999999999999999999999876542 22222 2233444 5689
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE-EecCCChhHHHHHHHHHHH----cCCcEEeCccCCCCccccCC
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDG 201 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li-n~s~~~~~~~~~l~~~l~~----~~~~~~~~p~~~~~~~~~~~ 201 (290)
+||+|++++|.+.+.+..++ .++.+.++++++|+ |+|+..+. .+.+.+.. .++|++++|...
T Consensus 83 ~aD~Vieav~e~~~~k~~v~--~~l~~~~~~~~il~s~tS~i~~~---~l~~~~~~~~r~~g~h~~~pp~~~-------- 149 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLF--SELDRICKPSAILASNTSSISIT---RLASATQRPQQVIGMHFMNPPPIM-------- 149 (295)
T ss_pred CCCEEEEcCccCHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCCcceEEEeccCCcccC--------
Confidence 99999999999888887773 34566788998886 66666544 34444432 134555554432
Q ss_pred ceEEEec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhc
Q 022909 202 QLIFLAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSF 278 (290)
Q Consensus 202 ~~~~~~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~ 278 (290)
+++.++. ++++.++.+.++++.+|+.++++++..- . +.+.++. ..++|++.+.++...++++++.++...
T Consensus 150 ~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-~---i~nri~~---~~~~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 150 KLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-F---IVNRILM---PMINEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-H---HHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 2344443 4789999999999999999998876321 1 2222222 456899998888878999999988654
Q ss_pred CC
Q 022909 279 SF 280 (290)
Q Consensus 279 ~~ 280 (290)
++
T Consensus 223 ~g 224 (295)
T PLN02545 223 TN 224 (295)
T ss_pred cC
Confidence 43
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.9e-17 Score=142.14 Aligned_cols=189 Identities=16% Similarity=0.204 Sum_probs=131.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------CC-------------CccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 126 (290)
.++|+|||+|.||..+|..++..|++|.+||++++..+...+ .| +...++++ .++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hhc
Confidence 588999999999999999999999999999999877654321 12 34456665 478
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE-EecCCChhHHHHHHHHHHHc----CCcEEe-CccCCCCccccC
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKAT----GASFLE-APVSGSKKPAED 200 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li-n~s~~~~~~~~~l~~~l~~~----~~~~~~-~p~~~~~~~~~~ 200 (290)
++|+|++++|.+.+.+..++ +++.+.++++++++ |+|+..+ .++.+.+... ++|+++ +|+....
T Consensus 83 ~aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~~r~~g~h~~~p~~~~~~v----- 152 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISI---TRLASATDRPERFIGIHFMNPVPVMKLV----- 152 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCcccEEEeeccCCcccCceE-----
Confidence 99999999998877665553 35667788999887 5555443 2566665321 345554 2222111
Q ss_pred CceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhc
Q 022909 201 GQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSF 278 (290)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~ 278 (290)
.++.-.+++++.++.+.++++.+|+.++++++.+ -++.++++. ..+.|++.+.++.-.++++++.++...
T Consensus 153 -ei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~~---~~~~ea~~~~~~g~~~~~~iD~~~~~g 222 (292)
T PRK07530 153 -ELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRILL---PMINEAIYTLYEGVGSVEAIDTAMKLG 222 (292)
T ss_pred -EEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHHH---HHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 1111134688999999999999999999887754 233333333 445888877777556899999998643
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-17 Score=141.93 Aligned_cols=197 Identities=11% Similarity=0.055 Sum_probs=137.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-------------------------CCCccCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------------LGAKYQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-------------------------~g~~~~~~~~~~~ 125 (290)
.++|+|||+|.||..+|..++..|++|++||++++..+...+ .++..++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 378999999999999999999999999999999875444321 1234567888889
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEE
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 205 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~ 205 (290)
+++|+|++++|.+.+.+..++ +++.+.++++++|++.+++.. ..++.+.++. .-+++....+.+.. ..+++.
T Consensus 83 ~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~--~~~~~~~~~~-~~r~vg~Hf~~p~~---~~~lve 154 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLL--PSQFAEATGR-PEKFLALHFANEIW---KNNTAE 154 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCC--HHHHHhhcCC-cccEEEEcCCCCCC---cCCeEE
Confidence 999999999998766555442 345566788888854333332 2345554432 33566532233221 234444
Q ss_pred Ee---cCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCC
Q 022909 206 LA---AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFG 281 (290)
Q Consensus 206 ~~---~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~g 281 (290)
++ .++++.++.+.++++.+|+.++.+.....+.....+.. ..++|++.+.++...++++++.++...++.
T Consensus 155 vv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~------~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~ 227 (287)
T PRK08293 155 IMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLV------PFLSAALALWAKGVADPETIDKTWMIATGA 227 (287)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHH------HHHHHHHHHHHcCCCCHHHHHHHHHhccCC
Confidence 44 35779999999999999999988864444444332222 556899999888778999999998766653
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-17 Score=144.40 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=135.1
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh--------------CC-------------CccCCCHHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--------------LG-------------AKYQPSPDEV 124 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~--------------~g-------------~~~~~~~~~~ 124 (290)
++|+|||+|.||..+|..++..|++|++||++++..+...+ .+ +...++. +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 78999999999999999999999999999999877643211 11 1233455 56
Q ss_pred hhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc----CCcEEe-CccCCCCcccc
Q 022909 125 AASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLE-APVSGSKKPAE 199 (290)
Q Consensus 125 ~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~----~~~~~~-~p~~~~~~~~~ 199 (290)
++++|+|++++|.+.+.+..++ +++.+.+++++++++.+++ ....++.+.+... +.||++ +|+..... ..
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE-v~ 157 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASNTSG--IMIAEIATALERKDRFIGMHWFNPAPVMKLIE-VV 157 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCcccEEEEecCCCcccCccEE-Ee
Confidence 7899999999998876555442 3455667888888765444 3445666666432 344444 23332211 11
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcC
Q 022909 200 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFS 279 (290)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~ 279 (290)
.+.. .+++.++.+.++++.+|+.++++++.+.....+++.++ ++|++.+.++.-.++++++.++...+
T Consensus 158 ~g~~-----T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~-------~~ea~~~~~~g~a~~~~iD~~~~~~~ 225 (291)
T PRK06035 158 RAAL-----TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW-------LLEAIRSFEIGIATIKDIDEMCKLAF 225 (291)
T ss_pred CCCC-----CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH-------HHHHHHHHHcCCCCHHHHHHHHhhcC
Confidence 1111 36899999999999999999999887766666666554 38888887775578999999987665
Q ss_pred CC
Q 022909 280 FG 281 (290)
Q Consensus 280 ~g 281 (290)
+.
T Consensus 226 g~ 227 (291)
T PRK06035 226 GF 227 (291)
T ss_pred CC
Confidence 53
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=138.34 Aligned_cols=180 Identities=19% Similarity=0.309 Sum_probs=140.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc--hhhHHhCCCccC--CCH-HHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAKYQ--PSP-DEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~--~~~~~~~g~~~~--~~~-~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
.++|+|+|+|.||+.+++.++..|+.|.+++++... .+...+.|+... .+. .+.+.++|+||+++|- ..+..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence 589999999999999999999999988777666544 333333444321 222 5667789999999987 6677777
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCC--ccccCCceEEEecCC---HHHHHHHHH
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSK--KPAEDGQLIFLAAGD---KSLYNTVAP 219 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~--~~~~~~~~~~~~~~~---~~~~~~v~~ 219 (290)
+++.+.+++|++++|+++......+++.+.+.+.. +|++ ||++|++ .....+..++++..+ .+.++++.+
T Consensus 82 ---~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~ 157 (279)
T COG0287 82 ---KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKR 157 (279)
T ss_pred ---HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHH
Confidence 56677899999999999999888888888776655 8888 9999994 444566666676643 478899999
Q ss_pred HHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHH
Q 022909 220 LLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFS 255 (290)
Q Consensus 220 ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ 255 (290)
+++.+|.+++.+....+...+..++.+.+....++.
T Consensus 158 ~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~ 193 (279)
T COG0287 158 LWEALGARLVEMDAEEHDRVMAAVSHLPHAAALALA 193 (279)
T ss_pred HHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887765553333
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-17 Score=141.40 Aligned_cols=207 Identities=14% Similarity=0.099 Sum_probs=136.5
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCC---e-EEEEeCC-ccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHH
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGC---D-VTVWNRT-KSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~---~-V~~~d~~-~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
..+||+|||+|+||.++++.+...|. + +.+++|+ +++.+.+.+ .++..+.+.+++++++|+|++++|. ...+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHH
Confidence 36899999999999999999988763 3 7778874 566666554 5676677888999999999999986 55677
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHH
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI 223 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~ 223 (290)
++ +++.+.++ +.++|+++.+-. .+.+.+.+.........+|.+..+.......+.+....+++..+.++++|+.
T Consensus 82 v~---~~l~~~~~-~~~vis~~~gi~--~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~ 155 (245)
T PRK07634 82 LL---AELSPLLS-NQLVVTVAAGIG--PSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKG 155 (245)
T ss_pred HH---HHHHhhcc-CCEEEEECCCCC--HHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHh
Confidence 66 23333444 578888865543 3356666543222223477655433222222222233567888999999999
Q ss_pred hCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 224 ~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+|..++ +.+.....+..+.. .-.++...+.|++ ..+.+.|++++++++++.+++.|+..+
T Consensus 156 ~G~~~~-~~e~~~~~~~a~~g-s~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~ 216 (245)
T PRK07634 156 IGTSQL-CTEEEVHQLTAVTG-SAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASM 216 (245)
T ss_pred CCCEEE-ECHHHcchHHhhhc-chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999775 54322222221111 1122224445555 578999999999999999999988654
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=141.07 Aligned_cols=209 Identities=17% Similarity=0.167 Sum_probs=161.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-------------------C-CccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------------------G-AKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~aDi 130 (290)
.++|||||+|.||..+|..++..|++|+++|.++.+.+.+... | ++.+++.++ ++.||+
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv 87 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDV 87 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCE
Confidence 4899999999999999999999999999999998876665431 2 344555555 459999
Q ss_pred EEEEeCCh------hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc--CCc-----EEe-CccCCCCc
Q 022909 131 TFAMLADP------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GAS-----FLE-APVSGSKK 196 (290)
Q Consensus 131 vv~~~p~~------~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~--~~~-----~~~-~p~~~~~~ 196 (290)
+++|+|++ ++...+....+.+.+.|++|.++|--|+..|.+++++...+.+. |+. ++. +|.-..+.
T Consensus 88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~PG 167 (436)
T COG0677 88 FIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPG 167 (436)
T ss_pred EEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccCCC
Confidence 99999975 23334443345667889999999999999999999999887764 332 222 55322111
Q ss_pred c---ccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHH
Q 022909 197 P---AEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVT 272 (290)
Q Consensus 197 ~---~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~ 272 (290)
. ......-++.|.+++..+.+..+++.+-..++.+.+...|++.|+..|.++..+ +..+|...+|+++|+|..++.
T Consensus 168 ~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevI 247 (436)
T COG0677 168 NVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVI 247 (436)
T ss_pred chhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 1 111222356666788889999999998766888899999999999999999999 888888899999999999999
Q ss_pred HHHhhcCC
Q 022909 273 MFLQSFSF 280 (290)
Q Consensus 273 ~~i~~~~~ 280 (290)
++.+.-..
T Consensus 248 eaAnt~P~ 255 (436)
T COG0677 248 EAANTKPR 255 (436)
T ss_pred HHhccCCc
Confidence 99987644
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=145.01 Aligned_cols=203 Identities=18% Similarity=0.154 Sum_probs=149.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc----cCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK----YQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~----~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
++|+|||+|.||.++++.|+..|++|.+|++++++.......+.. ..++++++++++|+|++|+|. ..+..++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl-- 77 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALL-- 77 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHH--
Confidence 469999999999999999999999999999887654433332222 235677888999999999987 5677777
Q ss_pred cccccc-cCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc--------ccCCceEEEec---CCHHHH
Q 022909 148 KHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--------AEDGQLIFLAA---GDKSLY 214 (290)
Q Consensus 148 ~~~~~~-~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~--------~~~~~~~~~~~---~~~~~~ 214 (290)
+++.+ .++++.++.|+++.+....+.+.+.+ ....+|++ +|+.+.+.. ...+..++++. .+++.+
T Consensus 78 -~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~-~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~ 155 (359)
T PRK06545 78 -AELADLELKPGVIVTDVGSVKGAILAEAEALL-GDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAV 155 (359)
T ss_pred -HHHhhcCCCCCcEEEeCccccHHHHHHHHHhc-CCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHH
Confidence 34444 47899999999998876666665542 34567888 899887532 23444455554 467889
Q ss_pred HHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 215 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 215 ~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+.++++++.+|..++.+++..+.....+++.+-+.+. +++ +...+.+.+.+..+..+++.+...+
T Consensus 156 ~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia----~al--~~~~~~~~~~~~~la~~gfrd~tRi 220 (359)
T PRK06545 156 AELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILA----SSL--AARLAGEHPLALRLAAGGFRDITRI 220 (359)
T ss_pred HHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHH----HHH--HHhhccCchHHHhhhcccccCCccc
Confidence 9999999999999988988888888877776654333 332 5566777777778887777765443
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.3e-17 Score=141.24 Aligned_cols=193 Identities=15% Similarity=0.152 Sum_probs=136.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhh-----------HHhCC-------------CccCCCHHHHhhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAAS 127 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~ 127 (290)
++|||||+|.||..+|..++..|++|++||++++..+. +.+.| +..++++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 58999999999999999999999999999999987655 22222 2256677 45799
Q ss_pred CCeEEEEeCChhHHHHHhcccccccccC-CCCCEEEEecCCChhHHHHHHHHHHHc--CCcEEeC-ccCCCCccccCCce
Q 022909 128 CDVTFAMLADPESAMDVACGKHGAASGM-GPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLEA-PVSGSKKPAEDGQL 203 (290)
Q Consensus 128 aDivv~~~p~~~~~~~~~~~~~~~~~~~-~~~~~lin~s~~~~~~~~~l~~~l~~~--~~~~~~~-p~~~~~~~~~~~~~ 203 (290)
+|+|+.++|.+.+.+..+++ ++-+.. ++++++++.|++.+....+.....+++ ++||+++ |+.... .+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~--~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv------El 156 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFA--ELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV------EL 156 (286)
T ss_pred CCEEEEecccCHHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE------EE
Confidence 99999999999999988853 333444 789999888777666554432222223 4555552 232221 22
Q ss_pred EEEecCCHHHHHHHHHHHH-HhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCC
Q 022909 204 IFLAAGDKSLYNTVAPLLD-IMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSF 280 (290)
Q Consensus 204 ~~~~~~~~~~~~~v~~ll~-~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~ 280 (290)
+....++++.++.+.+++. .+|+.++.+++.. +..... ++. ..++|++.+.++...++++++.++...++
T Consensus 157 v~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~p-Gfi~nR---i~~---~~~~Ea~~ll~eGv~~~~dID~~~~~g~G 227 (286)
T PRK07819 157 VPTLVTSEATVARAEEFASDVLGKQVVRAQDRS-GFVVNA---LLV---PYLLSAIRMVESGFATAEDIDKAMVLGCA 227 (286)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCCceEecCCC-ChHHHH---HHH---HHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 3334568899999999988 5999999997622 222111 111 55689998888777889999999876544
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-16 Score=140.55 Aligned_cols=206 Identities=16% Similarity=0.106 Sum_probs=165.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-------------------C-CccCCCHHHHhhcCCeE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------------------G-AKYQPSPDEVAASCDVT 131 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~aDiv 131 (290)
|||.|+|.|.+|...+..|+..||+|+.+|.++++.+.+.+. | +.++++.+++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 689999999999999999999999999999999887766442 1 55678899999999999
Q ss_pred EEEeCChhH------HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcC----CcEEeCccCCCCccccC-
Q 022909 132 FAMLADPES------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKKPAED- 200 (290)
Q Consensus 132 v~~~p~~~~------~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~----~~~~~~p~~~~~~~~~~- 200 (290)
++++|+|.. ++.+....+++.+.++..+++|+-|+.++...+.+.+.+.... ..++..|.|-.|..+..
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~Av~D 160 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSAVYD 160 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcchhhh
Confidence 999997743 4444333356777888889999999999999999888777654 34777888776655432
Q ss_pred --CceEEEecCCH-HHHHHHHHHHHHh--CCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHH
Q 022909 201 --GQLIFLAAGDK-SLYNTVAPLLDIM--GKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMF 274 (290)
Q Consensus 201 --~~~~~~~~~~~-~~~~~v~~ll~~~--G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~ 274 (290)
.+--+++|... .+.+.+++++..+ ...++...+...+++.|+.+|.+.+.- +.++|...+|++.|+|.+++.+.
T Consensus 161 ~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V~~g 240 (414)
T COG1004 161 FLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQVAEG 240 (414)
T ss_pred ccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 23345666544 4678888888776 445777888899999999999998888 99999999999999999999998
Q ss_pred Hhh
Q 022909 275 LQS 277 (290)
Q Consensus 275 i~~ 277 (290)
+..
T Consensus 241 IGl 243 (414)
T COG1004 241 IGL 243 (414)
T ss_pred cCC
Confidence 854
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-17 Score=141.59 Aligned_cols=202 Identities=16% Similarity=0.190 Sum_probs=135.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC----eEEEEeCCccchhhHHh-C-CCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-L-GAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~----~V~~~d~~~~~~~~~~~-~-g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
|+|+|||+|+||.++++.|...|. +|.+|+|++++.+.+.+ . ++....+..++++++|+|++++| +..+..++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence 479999999999999999998883 79999999887766655 2 56667788888999999999996 56677877
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI 223 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~~ 223 (290)
+++.+.+++++++|+++.+- ..+.+.+.+....+++ .|... .....+...+..+ .+++..+.++++|+.
T Consensus 80 ---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~--~p~~~--~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~ 150 (273)
T PRK07680 80 ---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARI--IPSIT--NRALSGASLFTFGSRCSEEDQQKLERLFSN 150 (273)
T ss_pred ---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEE--CCChH--HHHhhccEEEeeCCCCCHHHHHHHHHHHHc
Confidence 44556778889999997543 4556666654222223 33221 2233455544444 355778899999999
Q ss_pred hCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHH-CCCCHHHHHHHHhhcCCCCccc
Q 022909 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEF-VDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 224 ~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~-~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+|. ++.+.+........+... -.++++.+.+++ ..+.+ .|++++++.+++.+++.|+..+
T Consensus 151 ~G~-~~~i~e~~~~~~~~l~gs-~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l 212 (273)
T PRK07680 151 IST-PLVIEEDITRVSSDIVSC-GPAFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKL 212 (273)
T ss_pred CCC-EEEEChHhcchhhhhccc-hHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 996 445553211111111111 111112223332 22344 8999999999999999988654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-16 Score=152.53 Aligned_cols=203 Identities=17% Similarity=0.194 Sum_probs=144.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhh-cCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|||||+|.||+.+|+.|..+|++|.+|||+... +...+.|+....++++++. ++|+|++|+|. ..+..++ .
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi--~- 443 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL--K- 443 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH--H-
Confidence 799999999999999999999999999999998643 4445567766778888876 58999999985 7788887 2
Q ss_pred ccc-ccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE-eCccCCCCccc-c-CCceE----EEecCCH---HHHHHHH
Q 022909 150 GAA-SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPA-E-DGQLI----FLAAGDK---SLYNTVA 218 (290)
Q Consensus 150 ~~~-~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~-~~p~~~~~~~~-~-~~~~~----~~~~~~~---~~~~~v~ 218 (290)
++. ..++++++++|+++++....+.+.+.+. .+..|+ .+|+++.+... + ..... ..++++. +..+.+.
T Consensus 444 ~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~-~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~ 522 (667)
T PLN02712 444 SLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP-QDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFL 522 (667)
T ss_pred HHHHhcCCCCcEEEECCCccHHHHHHHHHhcc-CCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHH
Confidence 233 3688999999999988655555555554 356788 49999987541 1 11111 1223333 3445566
Q ss_pred HHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHhhcCCCCcccc
Q 022909 219 PLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFL--------INTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 219 ~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~--------~~~~~~~i~~~~~gs~~~~ 286 (290)
++++.+|.+++.+....+...+..++.+.+ .++.+ ..+.|++ .+++..++...+..++.++
T Consensus 523 ~l~~~lGa~vv~ms~eeHD~~~A~vShLpH----lla~~---L~~~~~~~~~~~~~gfr~l~~Li~Ria~~~p~l~ 591 (667)
T PLN02712 523 DIFAREGCRMVEMSCAEHDWHAAGSQFITH----TMGRL---LEKLGLESTPINTKGYETLLNLVENTAGDSFDLY 591 (667)
T ss_pred HHHHHcCCEEEEeCHHHHHHHHHHHHHHHH----HHHHH---HHHCCCcccccccHHHHHHHHHHHhhcCCCHHHH
Confidence 999999999999988777766654443332 22222 2444554 7888888888888887665
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=138.69 Aligned_cols=200 Identities=15% Similarity=0.116 Sum_probs=155.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------------CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
++|+|||.|.+|.++|+.|...|++|.+|.|+++..+++.+. ++..++|+.++++++|+|++++|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 789999999999999999999999999999998776665542 244568999999999999999987
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEecCCChh-----HHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHH
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-----TSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKS 212 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~-----~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 212 (290)
+.++.++ +.+...++++..+|+++-|--. ..+.+.+.+....+.+++.|.+..+........+.+.+.+++
T Consensus 82 -~~~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~ 157 (329)
T COG0240 82 -QALREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQE 157 (329)
T ss_pred -HHHHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHH
Confidence 7788887 4445678899999999844322 223334444434477888999988887777777778888899
Q ss_pred HHHHHHHHHHHhCCcEEEeCCc-----------------chHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHH
Q 022909 213 LYNTVAPLLDIMGKSRFYLGDV-----------------GNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMF 274 (290)
Q Consensus 213 ~~~~v~~ll~~~G~~~~~~~~~-----------------g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~ 274 (290)
..++++++|+.--++++...|. |....+.+..|...+++ .+++|..+++...|-+++++..+
T Consensus 158 ~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gL 237 (329)
T COG0240 158 AAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGL 237 (329)
T ss_pred HHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhccc
Confidence 9999999999877777766552 33333455567778888 99999999999999999876654
Q ss_pred H
Q 022909 275 L 275 (290)
Q Consensus 275 i 275 (290)
-
T Consensus 238 s 238 (329)
T COG0240 238 S 238 (329)
T ss_pred c
Confidence 3
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=135.54 Aligned_cols=176 Identities=16% Similarity=0.287 Sum_probs=131.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHhCCC--ccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGA--KYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~~g~--~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.++|+|||+|.||..+++.|...|+ +|.+|||++++.+.+.+.|. ....+.++.++++|+|++++|. ..+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~-~~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPV-GASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCH-HHHHHHH-
Confidence 4789999999999999999999885 89999999887777666654 2345778888999999999987 4445555
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-c-------cCCceEEEe---cCCHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-A-------EDGQLIFLA---AGDKSLY 214 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-~-------~~~~~~~~~---~~~~~~~ 214 (290)
+++.+.++++.+++++++......+++.+.+. .++++++ +|+.+++.. . ..+..++++ +++++.+
T Consensus 84 --~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~ 160 (307)
T PRK07502 84 --AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAV 160 (307)
T ss_pred --HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHH
Confidence 34556788999999998877655555555443 3567888 699876531 1 123333343 3567889
Q ss_pred HHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH
Q 022909 215 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS 251 (290)
Q Consensus 215 ~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~ 251 (290)
+.+.++++.+|.+++.+++..+...+.+++...+.+.
T Consensus 161 ~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a 197 (307)
T PRK07502 161 ARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIA 197 (307)
T ss_pred HHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHH
Confidence 9999999999999999988888888777776654433
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-14 Score=124.22 Aligned_cols=146 Identities=13% Similarity=0.131 Sum_probs=109.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccch-----hhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCC
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGP 157 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~-----~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~ 157 (290)
|..+|++|.+.|++|++|||++++. +.+.+.|+..+++..++++++|+|++++|.+..++.++ ..+++.+++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl---~GLaa~L~~ 108 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA---RTIIEHVPE 108 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH---HHHHhcCCC
Confidence 7899999999999999999987643 34677888889999999999999999999999898887 357888999
Q ss_pred CCEEEEecCCChhHHHHHHHH-HH--HcCCcEEe-CccCCCCccccCCceEEEec--------CCHHHHHHHHHHHHHhC
Q 022909 158 GKGYVDVSTVDGDTSKLINGH-IK--ATGASFLE-APVSGSKKPAEDGQLIFLAA--------GDKSLYNTVAPLLDIMG 225 (290)
Q Consensus 158 ~~~lin~s~~~~~~~~~l~~~-l~--~~~~~~~~-~p~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~ll~~~G 225 (290)
|+++||+|+.++.......+. |+ ++.+.+.+ ||-. .|........++.+ .+++.++++.++.+..+
T Consensus 109 GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~--vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~ 186 (341)
T TIGR01724 109 NAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAA--VPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTG 186 (341)
T ss_pred CCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCC--CCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhC
Confidence 999999999999877655544 33 33444444 4422 22222222222222 25688899999999999
Q ss_pred CcEEEeCC
Q 022909 226 KSRFYLGD 233 (290)
Q Consensus 226 ~~~~~~~~ 233 (290)
+.+|.+..
T Consensus 187 ~~~~~~pa 194 (341)
T TIGR01724 187 KKAYVVPA 194 (341)
T ss_pred CCeeecch
Confidence 99887653
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-15 Score=143.19 Aligned_cols=173 Identities=16% Similarity=0.194 Sum_probs=130.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHh-hcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
.++|||||+|.||+.+++.|..+|++|.+||++... ....+.|+....+.++++ +++|+|++|+|. ..+..++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl---~ 126 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVL---K 126 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHH---H
Confidence 589999999999999999999999999999998543 445557777777888866 469999999985 6788887 2
Q ss_pred ccc-ccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc--ccCCceEEEe----cCCH---HHHHHHH
Q 022909 150 GAA-SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--AEDGQLIFLA----AGDK---SLYNTVA 218 (290)
Q Consensus 150 ~~~-~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~--~~~~~~~~~~----~~~~---~~~~~v~ 218 (290)
++. ..++++++|+|+++......+.+.+.+.. +..|+. ||++|++.. ...+...++. +.++ +..+.+.
T Consensus 127 ~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~-~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (667)
T PLN02712 127 SLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE-DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFL 205 (667)
T ss_pred hhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC-CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHH
Confidence 332 56899999999998886555556655543 456777 999998732 2233333333 2222 3456677
Q ss_pred HHHHHhCCcEEEeCCcchHHHHHHHHHHHHH
Q 022909 219 PLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249 (290)
Q Consensus 219 ~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~ 249 (290)
++++.+|.+++.+....+..++..++.+-+.
T Consensus 206 ~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~ 236 (667)
T PLN02712 206 EVFEREGCKMVEMSCTEHDKYAAESQFITHT 236 (667)
T ss_pred HHHHHcCCEEEEeCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888888887766543
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.9e-16 Score=134.29 Aligned_cols=203 Identities=15% Similarity=0.170 Sum_probs=135.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC----CeEEEEeCCcc-chhhHHh-C-CCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS-KCDPLIS-L-GAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g----~~V~~~d~~~~-~~~~~~~-~-g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
++|+|||+|+||.++++.|...| ++|.+|+|+++ +.+.+.. . +.....+..++++++|+|++++| ++....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 57999999999999999999888 68999998653 2333333 2 23445678888999999999998 4667777
Q ss_pred hcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEec--CCHHHHHHHHHHH
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLL 221 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~ll 221 (290)
+ +++.+.++++.++|++..| ...+.|.+.+.. .+++. +|+... ..+.+...+..+ -+++..+.++++|
T Consensus 81 l---~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~--~~vvR~MPN~~~--~~g~g~t~~~~~~~~~~~~~~~v~~l~ 151 (277)
T PRK06928 81 L---KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG--LQVSRLIPSLTS--AVGVGTSLVAHAETVNEANKSRLEETL 151 (277)
T ss_pred H---HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC--CCEEEEeCccHH--HHhhhcEEEecCCCCCHHHHHHHHHHH
Confidence 7 3455667788888888655 344467676642 24444 565432 234454444333 2457788999999
Q ss_pred HHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHC-CCCHHHHHHHHhhcCCCCcccc
Q 022909 222 DIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFV-DFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 222 ~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~-G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
+.+|..+ .+.+.....+. .+...--++++.+.|++ ..+.+. |++++++.+++.+++.|+..+.
T Consensus 152 ~~~G~~~-~v~E~~~d~~t-al~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a~l~ 216 (277)
T PRK06928 152 SHFSHVM-TIREENMDIAS-NLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLL 216 (277)
T ss_pred HhCCCEE-EEchhhCceee-eeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999955 44431111111 11111122234555666 467888 7999999999999999987653
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=9e-15 Score=128.71 Aligned_cols=193 Identities=16% Similarity=0.101 Sum_probs=130.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhh-----------HHhCC-------------CccCCCHHHHhhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAAS 127 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~ 127 (290)
++|+|||+|.||..+|..++..|++|+++|+++++.+. +.+.| +..+++.++ +++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence 68999999999999999999999999999999887642 22232 233556654 789
Q ss_pred CCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEE
Q 022909 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFL 206 (290)
Q Consensus 128 aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~ 206 (290)
||+|++++|.+.+.+..++ +++.+.++++++++..+++ .....+.+.+... -+++. +|+...+.... -.++.-
T Consensus 83 aDlVi~av~e~~~~k~~~~--~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~-~r~ig~h~~~P~~~~~~-vev~~g 156 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIF--AQLDEIAKPEAILATNTSS--LSITELAAATKRP-DKVIGMHFFNPVPVMKL-VEIIRG 156 (282)
T ss_pred CCeeeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC-cceEEeeccCCcccCcc-EEEeCC
Confidence 9999999998777774442 4466678889888443333 3333666766433 34444 44432221110 011111
Q ss_pred ecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcC
Q 022909 207 AAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFS 279 (290)
Q Consensus 207 ~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~ 279 (290)
.+.+++..+.+.++++.+|+.++.+++.. +. +.| -++ ..++|+..+.++.-.++++++.++...+
T Consensus 157 ~~t~~e~~~~~~~l~~~lGk~pv~~~d~~-g~----i~~---Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~ 222 (282)
T PRK05808 157 LATSDATHEAVEALAKKIGKTPVEVKNAP-GF----VVN---RILIPMINEAIFVLAEGVATAEDIDEGMKLGC 222 (282)
T ss_pred CCCCHHHHHHHHHHHHHcCCeeEEecCcc-Ch----HHH---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 23568999999999999999999997533 22 222 112 5568998888776688999999997443
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-14 Score=144.44 Aligned_cols=205 Identities=15% Similarity=0.166 Sum_probs=149.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC--CeEEEEeCCccchhhHHhCCCc--cCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISLGAK--YQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
-++|+|||+|.||.++++.+...| ++|++||+++++.+.+.+.|.. ...+.+++++++|+|++++|. ..+..++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl- 80 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPV-LAMEKVL- 80 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCH-HHHHHHH-
Confidence 478999999999999999999988 4899999998887776666654 445678889999999999986 4677776
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccc--------cCCceEEEec---CCHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPA--------EDGQLIFLAA---GDKSLY 214 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~--------~~~~~~~~~~---~~~~~~ 214 (290)
+++.+.++++.+++++++.+....+.+.+.+....++++. +|+++++... ..+..++++. .+++..
T Consensus 81 --~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~ 158 (735)
T PRK14806 81 --ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAAL 158 (735)
T ss_pred --HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHH
Confidence 3455677889999999998877777777766544566665 8988765421 1233333433 456788
Q ss_pred HHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCc
Q 022909 215 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNL 283 (290)
Q Consensus 215 ~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~ 283 (290)
+.+.++++.+|..++.+++..+.....+++..-+.+...+.|++ .+.|.. +++.++..+.+.+..
T Consensus 159 ~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l---~~~~~~-~~~~~~a~~~f~~~t 223 (735)
T PRK14806 159 ARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQL---ANREDN-LDIFRYAAGGFRDFT 223 (735)
T ss_pred HHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHH---hhcCCh-hHHHhhhccchhccc
Confidence 99999999999989888887777777777766654456666764 344433 345566655554443
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=136.88 Aligned_cols=188 Identities=20% Similarity=0.252 Sum_probs=131.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-----------------cCCCHHHHhhcCCeEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-----------------YQPSPDEVAASCDVTFA 133 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-----------------~~~~~~~~~~~aDivv~ 133 (290)
.|+|+|||+|.||..+|..|...|++|.+++|++. .+.+.+.|.. ..++. +.++.+|+|++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil 79 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLV 79 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEE
Confidence 57899999999999999999999999999999753 3444444432 12344 56788999999
Q ss_pred EeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeC--c---cCCCCcc---ccCCceEE
Q 022909 134 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA--P---VSGSKKP---AEDGQLIF 205 (290)
Q Consensus 134 ~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~--p---~~~~~~~---~~~~~~~~ 205 (290)
++|. .....++ +++.+.++++++++++..+ ....+.+.+.+.+. +++.+ + +..++.. ...+.+.+
T Consensus 80 ~vk~-~~~~~~~---~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~l~~ 152 (341)
T PRK08229 80 TVKS-AATADAA---AALAGHARPGAVVVSFQNG-VRNADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGALAI 152 (341)
T ss_pred EecC-cchHHHH---HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCceEe
Confidence 9986 4456666 4456677888998888654 33445566665432 23332 2 1212111 12334332
Q ss_pred EecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHH--------------------H-HHHHHHHHHHHHC
Q 022909 206 LAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGR--------------------S-CTFSYSFLTLEFV 264 (290)
Q Consensus 206 ~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~--------------------~-~~~~ea~~l~~~~ 264 (290)
+ ..+.++.+.++|+..|.++++.++.+...|.|++.|.+... + ..+.|++.++++.
T Consensus 153 --~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~ 229 (341)
T PRK08229 153 --E-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAA 229 (341)
T ss_pred --c-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHc
Confidence 2 23456889999999999999999999999999998853211 2 5689999999999
Q ss_pred CCCHHH
Q 022909 265 DFLINT 270 (290)
Q Consensus 265 G~~~~~ 270 (290)
|++++.
T Consensus 230 Gi~~~~ 235 (341)
T PRK08229 230 GIRPAR 235 (341)
T ss_pred CCCccc
Confidence 998644
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=128.29 Aligned_cols=192 Identities=17% Similarity=0.123 Sum_probs=127.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccch-hhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|||||+|+||+++|+.|+.+|++|.+++++..+. +...+.|+... +.+++++++|+|++++|.+.. ..++ ++
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~--~~ 92 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVY--EE 92 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHH--HH
Confidence 7999999999999999999999999999888765443 33344677655 889999999999999997554 6776 45
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-----ccCCceEEE-ecCC--HHHHHHHHHH
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-----AEDGQLIFL-AAGD--KSLYNTVAPL 220 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-----~~~~~~~~~-~~~~--~~~~~~v~~l 220 (290)
++++.++++++++ .+.|-.... +.... ..++.++. +|....... .+.+.+.++ +..+ .++.+.+..+
T Consensus 93 ~I~~~Lk~g~iL~-~a~G~~i~~--~~~~p-~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l 168 (330)
T PRK05479 93 EIEPNLKEGAALA-FAHGFNIHF--GQIVP-PADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAY 168 (330)
T ss_pred HHHhcCCCCCEEE-ECCCCChhh--ceecc-CCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHH
Confidence 6788899999884 444432221 11111 23444444 565544311 344555555 4444 7889999999
Q ss_pred HHHhCCcEE-----EeCCcc-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHH
Q 022909 221 LDIMGKSRF-----YLGDVG-NGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVT 272 (290)
Q Consensus 221 l~~~G~~~~-----~~~~~g-~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~ 272 (290)
+..+|.... ...+.. ...+-. +..+.... ..+..+....+..|.+++.++
T Consensus 169 ~~aiG~~~~g~~~ttf~~e~~~dl~ge--q~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay 225 (330)
T PRK05479 169 AKGIGGTRAGVIETTFKEETETDLFGE--QAVLCGGLTELIKAGFETLVEAGYQPEMAY 225 (330)
T ss_pred HHHcCCCccceeeeeecccccccchhh--HHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999998754 222222 222211 22233333 444666677899999999876
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-15 Score=127.91 Aligned_cols=197 Identities=16% Similarity=0.199 Sum_probs=126.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC----eEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~----~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.|||+|||+|+||.++++.|...+. ++++++|++++. +.....+..++++++|+|++++| +..++.++
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl- 74 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL- 74 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 4789999999999999999998762 489999876542 23445677788899999999986 57788888
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI 223 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~~ 223 (290)
+++.+.++++.++..++... .+.+.+.+.... .++. .|... .....+...+... .+++..+.++++|+.
T Consensus 75 --~~i~~~l~~~~iIS~~aGi~---~~~l~~~~~~~~-~vvr~mPn~p--~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~ 146 (260)
T PTZ00431 75 --LEIKPYLGSKLLISICGGLN---LKTLEEMVGVEA-KIVRVMPNTP--SLVGQGSLVFCANNNVDSTDKKKVIDIFSA 146 (260)
T ss_pred --HHHHhhccCCEEEEEeCCcc---HHHHHHHcCCCC-eEEEECCCch--hHhcceeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 34455555544443333333 334444443221 1222 34332 2223333333322 245778899999999
Q ss_pred hCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 224 ~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+|... .+.+.....+.. +...--++.+.+.|++ ..+.+.|++.+++++++.+++.|+..+
T Consensus 147 ~G~~~-~v~E~~~d~~ta-~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~l 207 (260)
T PTZ00431 147 CGIIQ-EIKEKDMDIATA-ISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHM 207 (260)
T ss_pred CCcEE-EEChHHcchhhh-hcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99955 454432222222 2122223334555666 578999999999999999999998765
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.7e-15 Score=131.45 Aligned_cols=203 Identities=12% Similarity=0.028 Sum_probs=133.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCC-ccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT-KSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~-~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|||+|+||.++++.|..+|++|+++++. .++.+.+.+.|+... +..++++++|+|++++|.......+. +
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~---~ 78 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE---A 78 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---H
Confidence 799999999999999999999999998876554 344455556677654 68888999999999999753444333 4
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-----ccCCceEEE-ecC--CHHHHHHHHHH
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-----AEDGQLIFL-AAG--DKSLYNTVAPL 220 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-----~~~~~~~~~-~~~--~~~~~~~v~~l 220 (290)
++.+.++++. +|.++.|-.. ..+...+.. +..++- +|....... .+.+...++ +.. +.++.+.+..+
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i--~~~~~~~~~-~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~ 154 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI--HFVQIVPPK-DVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAY 154 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH--hhccccCCC-CCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHH
Confidence 5667788886 5666555443 333334432 344444 777654321 144554443 332 46788999999
Q ss_pred HHHhCCc-------EE--EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 221 LDIMGKS-------RF--YLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 221 l~~~G~~-------~~--~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+..+|.. .+ .+.+.-.+... .+.....+++..+.|++ .+.|++++.++.++.++++|+..+
T Consensus 155 ~~~iG~~~~~~~~t~f~~e~~edl~~~~t-~l~Gs~pa~v~~~~eal---v~~G~~~e~A~~~~~~~~~g~~~l 224 (314)
T TIGR00465 155 AKAIGGGRAGVLETTFKEETESDLFGEQA-VLCGGLTALIKAGFDTL---VEAGYQPELAYFETVHELKLIVDL 224 (314)
T ss_pred HHHcCCCccceeechhHhhhhHHhcCcch-hHHhHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999986 31 12211111111 12222333344445665 899999999999999999887654
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-14 Score=127.46 Aligned_cols=162 Identities=16% Similarity=0.221 Sum_probs=124.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHH-CCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLK-AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~-~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
.++|+|||. |.||+.+|+.|+. +|++|+++|+..+ ...++++.++++|+|++|+|. ..+..++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv-~~~~~~l--- 68 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPI-RHTAALI--- 68 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCH-HHHHHHH---
Confidence 689999999 9999999999996 5889999998521 123677889999999999987 5566776
Q ss_pred ccccc---cCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-ccCCceEEEecCC-HHHHHHHHHHHH
Q 022909 149 HGAAS---GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-AEDGQLIFLAAGD-KSLYNTVAPLLD 222 (290)
Q Consensus 149 ~~~~~---~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-~~~~~~~~~~~~~-~~~~~~v~~ll~ 222 (290)
+++.+ .+++++++.|+++.+....+.+ ...+..|++ ||++|++.. ...+..++++... .+..+.++++++
T Consensus 69 ~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~ 144 (370)
T PRK08818 69 EEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCS 144 (370)
T ss_pred HHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHH
Confidence 33333 4799999999999886554444 233567888 999998743 3456666666543 455788999999
Q ss_pred HhCCcEEEeCCcchHHHHHHHHHHHHHHH
Q 022909 223 IMGKSRFYLGDVGNGAAMKLVVNMIMGRS 251 (290)
Q Consensus 223 ~~G~~~~~~~~~g~a~~~k~~~n~~~~~~ 251 (290)
.+|..++.+....+...+..++.+-+...
T Consensus 145 ~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~ 173 (370)
T PRK08818 145 ALQAECVYATPEHHDRVMALVQAMVHATH 173 (370)
T ss_pred HcCCEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888875554443
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=119.23 Aligned_cols=167 Identities=22% Similarity=0.271 Sum_probs=112.1
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHh-CC-CccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLIS-LG-AKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~-~g-~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
|+++|+|+|+||..+|++|...|++|.+-+|+.++ .+...+ .+ .....+.+++.+.+|+|++++|. .....++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~-~a~~~v~--- 77 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPF-EAIPDVL--- 77 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccH-HHHHhHH---
Confidence 88999999999999999999999999988665544 333333 12 22345788999999999999998 4555665
Q ss_pred ccccccCCCCCEEEEecCC---Ch------------hHHHHHHHHHHHcCC----cEEeCccCCCCccccCCceEEEecC
Q 022909 149 HGAASGMGPGKGYVDVSTV---DG------------DTSKLINGHIKATGA----SFLEAPVSGSKKPAEDGQLIFLAAG 209 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~---~~------------~~~~~l~~~l~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~ 209 (290)
+++.+.+. |+++||++.. .. ...+.+.+.+++..+ +-+....+..........-+++++.
T Consensus 78 ~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vagD 156 (211)
T COG2085 78 AELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAGD 156 (211)
T ss_pred HHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEecC
Confidence 45566665 8999999764 11 112333444433211 1111222222222223444667778
Q ss_pred CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHH
Q 022909 210 DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV 243 (290)
Q Consensus 210 ~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~ 243 (290)
|.++.+.+.++.+.+|+.++.+|+...+..+.-+
T Consensus 157 D~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~~ 190 (211)
T COG2085 157 DAEAKAVVAELAEDIGFRPLDAGPLENARILEPG 190 (211)
T ss_pred cHHHHHHHHHHHHhcCcceeeccccccccccccc
Confidence 8899999999999999999999987666554433
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-14 Score=125.41 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=133.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------C-------------CCccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~ 126 (290)
-++|+|||.|.||..+|..++..|++|.++|++++..+.... . .+....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 589999999999999999999978999999999665333211 1 123344444 678
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEE
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 206 (290)
+||+|+.++|.+.++++-++ +++-...+|++++-..+++-+ ..++.+.+++. -+++....|.++.. -+++-+
T Consensus 82 ~~DlVIEAv~E~levK~~vf--~~l~~~~~~~aIlASNTSsl~--it~ia~~~~rp-er~iG~HFfNP~~~---m~LVEv 153 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVF--AELEALAKPDAILASNTSSLS--ITELAEALKRP-ERFIGLHFFNPVPL---MPLVEV 153 (307)
T ss_pred cCCEEEEeccccHHHHHHHH--HHHHhhcCCCcEEeeccCCCC--HHHHHHHhCCc-hhEEEEeccCCCCc---ceeEEE
Confidence 99999999999999988774 345566788988843333322 23555665332 23444333333322 123333
Q ss_pred ecC---CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCC
Q 022909 207 AAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGN 282 (290)
Q Consensus 207 ~~~---~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs 282 (290)
+.+ +++.++.+.++.+.+|+.++.+.+.. + ++.|-+ +...+.|+..+..+...++++++.++.+.++--
T Consensus 154 I~g~~T~~e~~~~~~~~~~~igK~~vv~~D~p-G----Fi~NRi--l~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~p 225 (307)
T COG1250 154 IRGEKTSDETVERVVEFAKKIGKTPVVVKDVP-G----FIVNRL--LAALLNEAIRLLEEGVATPEEIDAAMRQGLGLP 225 (307)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCCEeecCCC-c----eehHhH--HHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCC
Confidence 333 57999999999999999885555522 1 222211 115668999998998899999999999877654
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=129.33 Aligned_cols=199 Identities=13% Similarity=0.039 Sum_probs=145.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-------CeEEEEeCCccc-----hhhHHhC--------------CCccCCCHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKSK-----CDPLISL--------------GAKYQPSPDEV 124 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-------~~V~~~d~~~~~-----~~~~~~~--------------g~~~~~~~~~~ 124 (290)
.++|+|||.|.+|.++|..|...| ++|.+|.|+++. .+.+.+. ++..+++++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 578999999999999999999876 799999998752 3333321 23446788899
Q ss_pred hhcCCeEEEEeCChhHHHHHhcccccccc--cCCCCCEEEEecCCChh-------HHHHHHHHHHHcCCcEEeCccCCCC
Q 022909 125 AASCDVTFAMLADPESAMDVACGKHGAAS--GMGPGKGYVDVSTVDGD-------TSKLINGHIKATGASFLEAPVSGSK 195 (290)
Q Consensus 125 ~~~aDivv~~~p~~~~~~~~~~~~~~~~~--~~~~~~~lin~s~~~~~-------~~~~l~~~l~~~~~~~~~~p~~~~~ 195 (290)
++++|+|++++|. +..+.++ +++.+ .+++++++|+++-|-.. ..+.+.+.+. ..+.++..|.+..+
T Consensus 91 v~~aDiIvlAVPs-q~l~~vl---~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGPs~A~E 165 (365)
T PTZ00345 91 VEDADLLIFVIPH-QFLESVL---SQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGANVAND 165 (365)
T ss_pred HhcCCEEEEEcCh-HHHHHHH---HHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECCCHHHH
Confidence 9999999999986 7788887 44445 56777789988744322 1233333442 34566788988877
Q ss_pred ccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCc-----------------chHHHHHHHHHHHHHHH-HHHHHH
Q 022909 196 KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDV-----------------GNGAAMKLVVNMIMGRS-CTFSYS 257 (290)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~-----------------g~a~~~k~~~n~~~~~~-~~~~ea 257 (290)
........+.+.+.+.+..+.++++|+.--++++...|. |....+.+..|...+++ .++.|.
T Consensus 166 va~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em 245 (365)
T PTZ00345 166 VAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEM 245 (365)
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 776677777777788888889999998777777765552 22222334457778888 999999
Q ss_pred HHHHHHCC--CCHHHHHHH
Q 022909 258 FLTLEFVD--FLINTVTMF 274 (290)
Q Consensus 258 ~~l~~~~G--~~~~~~~~~ 274 (290)
.++++..| .+++++..+
T Consensus 246 ~~l~~a~g~~~~~~T~~gl 264 (365)
T PTZ00345 246 KLFGKIFFPNVMDETFFES 264 (365)
T ss_pred HHHHHHhCCCCCccchhcc
Confidence 99999997 488888764
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-14 Score=127.09 Aligned_cols=191 Identities=16% Similarity=0.095 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccch-------hhH-----------HhC-------------CCccCCC--HHHHhhcC
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKC-------DPL-----------ISL-------------GAKYQPS--PDEVAASC 128 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~-------~~~-----------~~~-------------g~~~~~~--~~~~~~~a 128 (290)
||..||..++..|++|.+||++++.. +.. .+. .+....+ ..+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 68999999999999999999998531 111 111 1233333 55788999
Q ss_pred CeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHH----cCCcEEeCccCCCCccccCCceE
Q 022909 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQLI 204 (290)
Q Consensus 129 Divv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~----~~~~~~~~p~~~~~~~~~~~~~~ 204 (290)
|+|+.++|.+.+++..+++ ++.+.+++++++. |+.+.....++.+.++. .++||+++|...+......+
T Consensus 81 D~ViEav~E~~~~K~~~f~--~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g--- 153 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALR--WLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPS--- 153 (314)
T ss_pred CEEEECCcCCHHHHHHHHH--HHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCC---
Confidence 9999999999999988853 4667789999884 45555566677777743 25666665533222111111
Q ss_pred EEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCc
Q 022909 205 FLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNL 283 (290)
Q Consensus 205 ~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~ 283 (290)
.+++++.++.+.++++.+|+.++++++.+ +. ++..+. ..++|++.++++.|++++++++++....+..+
T Consensus 154 --~~t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gf-------i~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~ 223 (314)
T PRK08269 154 --DATDPAVVDRLAALLERIGKVPVVCGPSP-GY-------IVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRF 223 (314)
T ss_pred --CCCCHHHHHHHHHHHHHcCCcEEEecCCC-Cc-------chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCc
Confidence 13578999999999999999999998754 32 122233 77899999999999999999999998877655
Q ss_pred cccCCC
Q 022909 284 QYDGNF 289 (290)
Q Consensus 284 ~~~~~~ 289 (290)
...|+|
T Consensus 224 ~~~Gpf 229 (314)
T PRK08269 224 AVLGLL 229 (314)
T ss_pred cCcCHH
Confidence 445654
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=129.73 Aligned_cols=199 Identities=17% Similarity=0.090 Sum_probs=140.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC---------------CccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG---------------AKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g---------------~~~~~~~~~~~~~aDivv~~~ 135 (290)
.++|+|||+|.||.++|..|...| +|.+|.++++..+.+.+.+ +...+++++.++++|+|++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilav 85 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGV 85 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEe
Confidence 588999999999999999999998 6888989887766555421 224457778889999999999
Q ss_pred CChhHHHHHhcccccccccCCCCCEEEEecCCChhH-----HHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCC
Q 022909 136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD 210 (290)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~-----~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 210 (290)
|. ..++.++ +++.+.++++..+|+++.|-... .+.+.+.+.......+..|.+..+.........++.+.+
T Consensus 86 ps-~~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~ 161 (341)
T PRK12439 86 PS-HGFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPD 161 (341)
T ss_pred CH-HHHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCC
Confidence 85 6678877 45566778888888887654432 233444443223345566766544333333334455567
Q ss_pred HHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHH-----------------HHHHHHH-HHHHHHHHHHHHCCCCHHHHH
Q 022909 211 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVV-----------------NMIMGRS-CTFSYSFLTLEFVDFLINTVT 272 (290)
Q Consensus 211 ~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~-----------------n~~~~~~-~~~~ea~~l~~~~G~~~~~~~ 272 (290)
++..+.++++|+.-+.+++...|.....+.+.+- |...+++ .++.|+.++++..|.+++++.
T Consensus 162 ~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~ 241 (341)
T PRK12439 162 QHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFA 241 (341)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 7778899999999998888877755444444333 3333455 788999999999999999887
Q ss_pred HH
Q 022909 273 MF 274 (290)
Q Consensus 273 ~~ 274 (290)
.+
T Consensus 242 gl 243 (341)
T PRK12439 242 GL 243 (341)
T ss_pred cc
Confidence 64
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.6e-14 Score=127.18 Aligned_cols=196 Identities=12% Similarity=0.044 Sum_probs=140.0
Q ss_pred eEEEEcccHhHHHHHHHHHHCC--------CeEEEEeCCc-----cchhhHHhC--------------CCccCCCHHHHh
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAG--------CDVTVWNRTK-----SKCDPLISL--------------GAKYQPSPDEVA 125 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g--------~~V~~~d~~~-----~~~~~~~~~--------------g~~~~~~~~~~~ 125 (290)
||+|||.|++|.++|..|...| ++|.+|.|++ +-.+.+.+. ++...+++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999999988 9999999832 222222210 133457889999
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhH-------HHHHHHHHHHcCCcEEeCccCCCCccc
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-------SKLINGHIKATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~-------~~~l~~~l~~~~~~~~~~p~~~~~~~~ 198 (290)
+++|+|++++|. ...+.++ +++.+.++++.++|+++-|--.. .+.+.+.+ ...+.++..|.+..+...
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl---~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A~Eva~ 155 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGIC---KQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLANEVAK 155 (342)
T ss_pred hcCCEEEEECCh-HHHHHHH---HHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchHHHHHc
Confidence 999999999986 6777777 45566788888999987543222 23333444 234566778988877766
Q ss_pred cCCceEEEecCC----HHHHHHHHHHHHHhCCcEEEeCCc-c--hHHH--------------HHHHHHHHHHHH-HHHHH
Q 022909 199 EDGQLIFLAAGD----KSLYNTVAPLLDIMGKSRFYLGDV-G--NGAA--------------MKLVVNMIMGRS-CTFSY 256 (290)
Q Consensus 199 ~~~~~~~~~~~~----~~~~~~v~~ll~~~G~~~~~~~~~-g--~a~~--------------~k~~~n~~~~~~-~~~~e 256 (290)
+....+.+.+.+ .+..+.++++|+.--++++...|. | .+-+ +.+..|...+++ .++.|
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~E 235 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLE 235 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 666666677777 778888999998766667665542 1 1222 233447778888 99999
Q ss_pred HHHHHHHCCCCHH--HHHH
Q 022909 257 SFLTLEFVDFLIN--TVTM 273 (290)
Q Consensus 257 a~~l~~~~G~~~~--~~~~ 273 (290)
..++++..|-+++ ++..
T Consensus 236 m~~l~~~~g~~~~~~T~~g 254 (342)
T TIGR03376 236 MIKFARMFFPTGEVTFTFE 254 (342)
T ss_pred HHHHHHHhCCCCCCCcccc
Confidence 9999999998777 6643
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-14 Score=118.37 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=113.3
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------CCc---cCCCHHHHhhcCCeEEEEeCChh
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------GAK---YQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------g~~---~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
|||+||| +|+||+++++.|...|++|.+++|++++.+.+.+. +.. ...+..+.++++|+|++++|. .
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~-~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPW-D 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCH-H
Confidence 5799997 89999999999999999999999998776654431 211 223567788999999999986 5
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhH---------------HHHHHHHHHHcCCcEEeC-cc-----CCCCccc
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDT---------------SKLINGHIKATGASFLEA-PV-----SGSKKPA 198 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~---------------~~~l~~~l~~~~~~~~~~-p~-----~~~~~~~ 198 (290)
....++ +++...++ ++++|+++.+-..+ .+.+.+.+.. +.+++.+ |. .... ..
T Consensus 80 ~~~~~l---~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~-~~ 153 (219)
T TIGR01915 80 HVLKTL---ESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDV-DD 153 (219)
T ss_pred HHHHHH---HHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCC-CC
Confidence 556665 22333344 48899997664431 1334444432 1334432 22 2221 12
Q ss_pred cCCceEEEecCCHHHHHHHHHHHHHh-CCcEEEeCCcchHHHHHHHHH
Q 022909 199 EDGQLIFLAAGDKSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVN 245 (290)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~ll~~~-G~~~~~~~~~g~a~~~k~~~n 245 (290)
..+...+++|.++++.+.+.++.+.+ |+.++.+|+...+..+.-...
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~~~~ 201 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVESLTP 201 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHhHHH
Confidence 22344667777788999999999999 999999998777766554433
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-13 Score=123.09 Aligned_cols=197 Identities=15% Similarity=0.147 Sum_probs=130.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--C------------CccCCCHHHHh-hcCCeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--G------------AKYQPSPDEVA-ASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--g------------~~~~~~~~~~~-~~aDivv~~~p 136 (290)
|+|+|||+|.||..++..|...|++|.+|+|+++..+.+.+. + +....+.++.+ .++|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 479999999999999999999999999999988766555442 1 12335666666 58999999997
Q ss_pred ChhHHHHHhcccccccc-cCCCCCEEEEecCCChhH-----HHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCC
Q 022909 137 DPESAMDVACGKHGAAS-GMGPGKGYVDVSTVDGDT-----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD 210 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~-~~~~~~~lin~s~~~~~~-----~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 210 (290)
. ..+..++ +++.+ .++++..+|..+.|-... .+.+.+.+....+..+..|.+..+........+.+.+.+
T Consensus 81 s-~~~~~~l---~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~ 156 (326)
T PRK14620 81 T-QQLRTIC---QQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQN 156 (326)
T ss_pred H-HHHHHHH---HHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence 5 6677777 34555 667777677666554221 234444443333334444443222212222233445555
Q ss_pred HHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHH-----------------HHH-HHHHHHHHHHHHCCC--CHHH
Q 022909 211 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM-----------------GRS-CTFSYSFLTLEFVDF--LINT 270 (290)
Q Consensus 211 ~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~-----------------~~~-~~~~ea~~l~~~~G~--~~~~ 270 (290)
.+..+.+.++|+.-+.+++...|.....|.|++-|.+. .++ .++.|+..+++..|. ++++
T Consensus 157 ~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~ 236 (326)
T PRK14620 157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNT 236 (326)
T ss_pred HHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 66667777888877887877777766667776655432 224 678899999999987 8888
Q ss_pred HH
Q 022909 271 VT 272 (290)
Q Consensus 271 ~~ 272 (290)
+.
T Consensus 237 ~~ 238 (326)
T PRK14620 237 LI 238 (326)
T ss_pred hh
Confidence 83
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=135.53 Aligned_cols=193 Identities=14% Similarity=0.078 Sum_probs=133.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHH-----------hC-------------CCccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~ 126 (290)
-++|+|||+|.||..||..++..|++|.++|++++..+... +. .+...++++ .++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 391 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFE 391 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence 37899999999999999999999999999999987644321 11 234456664 469
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEE
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 206 (290)
+||+||.++|.+.+++.-++ +++-+.++++++|...+++-++ .++.+.+... -+++....+.++... +++-+
T Consensus 392 ~aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~p-~r~~g~Hff~P~~~~---~lVEv 463 (715)
T PRK11730 392 RVDVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTSTISI--SLLAKALKRP-ENFCGMHFFNPVHRM---PLVEV 463 (715)
T ss_pred CCCEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCCC-ccEEEEecCCccccc---ceEEe
Confidence 99999999999999887774 4556678889888554444333 3555665432 345553333332221 23333
Q ss_pred ec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCC
Q 022909 207 AA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSF 280 (290)
Q Consensus 207 ~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~ 280 (290)
+. .+++.++.+.+++..+|+.++.+.+.. + ++.|=+ ....+.|++.+.++ |.++++++.++...++
T Consensus 464 v~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~p-G----fv~nRi--~~~~~~ea~~lv~~-Ga~~e~ID~a~~~~~G 532 (715)
T PRK11730 464 IRGEKTSDETIATVVAYASKMGKTPIVVNDCP-G----FFVNRV--LFPYFAGFSQLLRD-GADFRQIDKVMEKQFG 532 (715)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCceEEecCcC-c----hhHHHH--HHHHHHHHHHHHHc-CCCHHHHHHHHHhhCC
Confidence 33 367999999999999999999996532 2 222321 11445788877765 5999999999887665
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-13 Score=116.79 Aligned_cols=193 Identities=17% Similarity=0.112 Sum_probs=118.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|||||+|+||+++|++|+.+|++|+++++.....+...+.|.... ++++++++||+|++++|. +++++++ +++
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd-~~t~~V~--~~e 91 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPD-EQQAHVY--KAE 91 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCC-hHHHHHH--HHH
Confidence 899999999999999999999999999999876544444445577654 899999999999999998 5668998 667
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-----ccCCceEEEe-c--CCHHHHHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-----AEDGQLIFLA-A--GDKSLYNTVAPLL 221 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-----~~~~~~~~~~-~--~~~~~~~~v~~ll 221 (290)
+++.|++|++++-. .+--+.... .....++.++- +|=-.+... .+.+.+.++. - .+..+.+.+....
T Consensus 92 il~~MK~GaiL~f~-hgfni~~~~---i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a 167 (335)
T PRK13403 92 VEENLREGQMLLFS-HGFNIHFGQ---INPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYA 167 (335)
T ss_pred HHhcCCCCCEEEEC-CCcceecCc---eeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHH
Confidence 89999999987644 333322211 11122333322 332222111 1233333222 1 2346777888888
Q ss_pred HHhCCc---EEEeCCcchHHHHHHH--HHHHHHHH-HHHHHHHHHHHHCCCCHHHHH
Q 022909 222 DIMGKS---RFYLGDVGNGAAMKLV--VNMIMGRS-CTFSYSFLTLEFVDFLINTVT 272 (290)
Q Consensus 222 ~~~G~~---~~~~~~~g~a~~~k~~--~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~ 272 (290)
..+|.. ++... .....-..+. +..+.... ..+...+....++|.+||.++
T Consensus 168 ~~iG~~ragv~~tt-f~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ay 223 (335)
T PRK13403 168 KGVGCTRAGVIETT-FQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAY 223 (335)
T ss_pred HHcCCCceeEEecc-hHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 888875 22221 0000001111 11122222 333444455688888888765
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-14 Score=129.96 Aligned_cols=138 Identities=13% Similarity=0.062 Sum_probs=102.0
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
++..|++..+ ++++.++++++++. +...|.+. . .+. +++|+|+|+|.|
T Consensus 218 V~nv~d~~tk--~~aD~~~G~~~s~~------d~~~R~~~------~-----~La-------------GKtVgVIG~G~I 265 (476)
T PTZ00075 218 AINVNDSVTK--SKFDNIYGCRHSLI------DGIFRATD------V-----MIA-------------GKTVVVCGYGDV 265 (476)
T ss_pred EEEeCCcchH--HHHHHHHHHHHHHH------HHHHHhcC------C-----CcC-------------CCEEEEECCCHH
Confidence 5566777777 56666777766655 22223221 1 223 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
|+.+|++++.+|++|+++++++.+.......|... .+++++++.+|+|++|+. +++++ +++.++.||+++++|
T Consensus 266 Gr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atG----t~~iI--~~e~~~~MKpGAiLI 338 (476)
T PTZ00075 266 GKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATG----NKDII--TLEHMRRMKNNAIVG 338 (476)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCC----ccccc--CHHHHhccCCCcEEE
Confidence 99999999999999999999877654444456654 379999999999999853 46677 567899999999999
Q ss_pred EecCCChhHHHHHHHHHHHc
Q 022909 163 DVSTVDGDTSKLINGHIKAT 182 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~ 182 (290)
|++++. .+.+.++|+..
T Consensus 339 NvGr~d---~Ei~i~aL~~~ 355 (476)
T PTZ00075 339 NIGHFD---NEIQVAELEAY 355 (476)
T ss_pred EcCCCc---hHHhHHHHHhc
Confidence 999984 44444555553
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-14 Score=115.31 Aligned_cols=152 Identities=14% Similarity=0.199 Sum_probs=99.1
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------C-------------CCccCCCHHHHhhcC
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAASC 128 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~a 128 (290)
+|+|||+|.||+.+|..++..|++|.+||++++..+...+ . .+.+.++++++. ++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999999876543221 1 244567898887 99
Q ss_pred CeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEec
Q 022909 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA 208 (290)
Q Consensus 129 Divv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 208 (290)
|+|+.++|.+.+.+.-++ +++-+.++++++|...+++-+. .++...+... -+++....+.++. ..+++-++.
T Consensus 80 dlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl~i--~~la~~~~~p-~R~ig~Hf~~P~~---~~~lVEvv~ 151 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSLSI--SELAAALSRP-ERFIGMHFFNPPH---LMPLVEVVP 151 (180)
T ss_dssp SEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS-H--HHHHTTSSTG-GGEEEEEE-SSTT---T--EEEEEE
T ss_pred heehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCCCH--HHHHhccCcC-ceEEEEecccccc---cCceEEEeC
Confidence 999999999988887663 4566678899988655444433 3455555432 2344432232221 122333332
Q ss_pred ---CCHHHHHHHHHHHHHhCCcEEEeCC
Q 022909 209 ---GDKSLYNTVAPLLDIMGKSRFYLGD 233 (290)
Q Consensus 209 ---~~~~~~~~v~~ll~~~G~~~~~~~~ 233 (290)
.+++.++.+.++++.+|+.++.+.|
T Consensus 152 ~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 152 GPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp -TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 4679999999999999999988754
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=133.31 Aligned_cols=193 Identities=14% Similarity=0.088 Sum_probs=133.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------C-------------CCccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~ 126 (290)
-++|+|||+|.||..||..++..|++|.++|++++..+...+ . .+....+++ .++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 391 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFD 391 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence 478999999999999999999999999999999876543211 1 234455664 468
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEE
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 206 (290)
+||+||.++|.+.+++.-++ +++-+.++++++|...+++-+ ..++.+.++.. -+++....+.++.. -+++-+
T Consensus 392 ~aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~l~--i~~ia~~~~~p-~r~ig~Hff~P~~~---~~lvEv 463 (714)
T TIGR02437 392 NVDIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTSTIS--ISLLAKALKRP-ENFCGMHFFNPVHR---MPLVEV 463 (714)
T ss_pred CCCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCC--HHHHHhhcCCc-ccEEEEecCCCccc---CceEee
Confidence 99999999999999887773 456677889998854444333 33555655432 33444333333221 123333
Q ss_pred ec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCC
Q 022909 207 AA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSF 280 (290)
Q Consensus 207 ~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~ 280 (290)
+. .+++.++.+.+++..+|+.++.+.+. .+ ++.|-+ +...+.|++.+.+ .|.++++++.++...++
T Consensus 464 v~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~-pG----fi~NRl--~~~~~~ea~~l~~-eG~~~~~ID~a~~~~~G 532 (714)
T TIGR02437 464 IRGEKSSDETIATVVAYASKMGKTPIVVNDC-PG----FFVNRV--LFPYFGGFSKLLR-DGADFVRIDKVMEKQFG 532 (714)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEeCCc-cc----chHHHH--HHHHHHHHHHHHH-CCCCHHHHHHHHHhcCC
Confidence 33 36799999999999999999999753 22 233322 1145688887775 46999999999877665
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.8e-13 Score=115.15 Aligned_cols=166 Identities=20% Similarity=0.279 Sum_probs=118.4
Q ss_pred HHHHHHHCC--CeEEEEeCCccchhhHHhCCCccC-CCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 86 MAQNLLKAG--CDVTVWNRTKSKCDPLISLGAKYQ-PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 86 la~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~~~-~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
+|+.|++.| ++|.+||++++..+...+.|+... .+..+.++++|+||+|+|. ..+..++ +++.+.++++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l---~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVL---EEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHH---HHHHCGS-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHH---HHhhhhcCCCcEEE
Confidence 578888888 699999999988777766666432 1225788999999999986 5677777 55677899999999
Q ss_pred EecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCc--------cccCCceEEEecC---CHHHHHHHHHHHHHhCCcEEE
Q 022909 163 DVSTVDGDTSKLINGHIKATGASFLE-APVSGSKK--------PAEDGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~--------~~~~~~~~~~~~~---~~~~~~~v~~ll~~~G~~~~~ 230 (290)
|+++......+.+.+.+. .+..|++ ||++|++. ....+...+++.. ++++++.++++++.+|.+++.
T Consensus 77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~ 155 (258)
T PF02153_consen 77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE 155 (258)
T ss_dssp E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence 999999888888777766 5678888 89999843 2345666777744 347889999999999999999
Q ss_pred eCCcchHHHHHHHHHHHHHHHHHHHH
Q 022909 231 LGDVGNGAAMKLVVNMIMGRSCTFSY 256 (290)
Q Consensus 231 ~~~~g~a~~~k~~~n~~~~~~~~~~e 256 (290)
+....+...+..++.+-+.+..++..
T Consensus 156 ~~~eeHD~~~A~vshlpH~~a~al~~ 181 (258)
T PF02153_consen 156 MDAEEHDRIMAYVSHLPHLLASALAN 181 (258)
T ss_dssp --HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888887766555433333
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=7e-13 Score=130.06 Aligned_cols=189 Identities=13% Similarity=0.060 Sum_probs=130.8
Q ss_pred CCeEEEEcccHhHHHHHHHHH-HCCCeEEEEeCCccchhhHHh-----------C-------------CCccCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~-~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~ 125 (290)
-++|+|||+|.||..||..++ ..|++|.++|++++..+...+ . .+..++++ +.+
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 387 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGF 387 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHh
Confidence 478999999999999999998 889999999998775433211 1 23445666 457
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEE
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 205 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~ 205 (290)
++||+|+.++|.+.+.+.-++ +++-+.++|+++|...+++-++ .++.+.+... -+++....+.++.. -+++-
T Consensus 388 ~~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~l~i--~~la~~~~~p-~r~ig~Hff~P~~~---~~lVE 459 (708)
T PRK11154 388 KHADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSSLPI--GQIAAAAARP-EQVIGLHYFSPVEK---MPLVE 459 (708)
T ss_pred ccCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHHhcCcc-cceEEEecCCcccc---CceEE
Confidence 999999999999999887773 4556778999988655444333 3555655433 34555333333221 12333
Q ss_pred Eec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Q 022909 206 LAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQ 276 (290)
Q Consensus 206 ~~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~ 276 (290)
++. .+++.++.+.+++..+|+.++.+.+. .+....-+ +. ..++|+..+.++ |+++++++.++.
T Consensus 460 vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~-pGfi~nRl---~~---~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 460 VIPHAKTSAETIATTVALAKKQGKTPIVVRDG-AGFYVNRI---LA---PYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred EECCCCCCHHHHHHHHHHHHHcCCceEEEecc-CcHHHHHH---HH---HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 333 46799999999999999999988652 22222111 11 556888877775 789999999986
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=127.55 Aligned_cols=189 Identities=12% Similarity=0.059 Sum_probs=129.0
Q ss_pred CCeEEEEcccHhHHHHHHHHH-HCCCeEEEEeCCccchhhHH-----------hC-------------CCccCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~-~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~ 125 (290)
-++|+|||+|.||..+|..++ ..|++|.++|++++..+... +. .+...++++ .+
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 382 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GF 382 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hh
Confidence 478999999999999999998 58999999999986543321 11 234556664 57
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEE
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 205 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~ 205 (290)
++||+|+.++|.+.+++.-++ +++-+..+++++|...+++-++ .++.+.+... -+++....+.++.. -+++-
T Consensus 383 ~~adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~p-~r~~g~HffnP~~~---~~lVE 454 (699)
T TIGR02440 383 KDVDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSSLPI--GQIAAAASRP-ENVIGLHYFSPVEK---MPLVE 454 (699)
T ss_pred ccCCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCH--HHHHHhcCCc-ccEEEEecCCcccc---CceEE
Confidence 899999999999999887773 4556678888887544443333 3555655433 24444333333221 12333
Q ss_pred Eec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Q 022909 206 LAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQ 276 (290)
Q Consensus 206 ~~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~ 276 (290)
++. .+++.++.+.++++.+|+.++.+.+. .+....-+ +. ..+.|++.+.+ .|+++++++.++.
T Consensus 455 vv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~-pGfi~nRl---~~---~~~~Ea~~l~~-~G~~~~dID~a~~ 520 (699)
T TIGR02440 455 VIPHAGTSEQTIATTVALAKKQGKTPIVVADK-AGFYVNRI---LA---PYMNEAARLLL-EGEPVEHIDKALV 520 (699)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEEccc-cchHHHHH---HH---HHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 333 46799999999999999999999763 22222111 11 55688887766 5689999999985
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.2e-13 Score=129.72 Aligned_cols=189 Identities=12% Similarity=0.016 Sum_probs=129.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------C-------------CCccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~ 126 (290)
-++|+|||+|.||..||..++..|++|.++|++++..+...+ . .+...++++ .++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 413 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFK 413 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence 478999999999999999999999999999999876543211 1 244456675 568
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEE
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 206 (290)
+||+||.++|.+.+++.-++ +++-+.++++++|...+++ ....++.+.+.+. -+++....+.++.. -+++-+
T Consensus 414 ~aDlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p-~r~ig~Hff~P~~~---m~LvEv 485 (737)
T TIGR02441 414 NADMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTSA--LPIKDIAAVSSRP-EKVIGMHYFSPVDK---MQLLEI 485 (737)
T ss_pred cCCeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCc-cceEEEeccCCccc---CceEEE
Confidence 99999999999999887773 4566778899888543333 2333555665443 23444333332221 123333
Q ss_pred ec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Q 022909 207 AA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQ 276 (290)
Q Consensus 207 ~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~ 276 (290)
+. .+++.++.+.+++..+|+.++.+.+.. +. +.|=+ +...+.|+..+.++ |+++++++.++.
T Consensus 486 v~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p-GF----i~NRi--~~~~~~ea~~lv~e-Gv~~~~ID~a~~ 550 (737)
T TIGR02441 486 ITHDGTSKDTLASAVAVGLKQGKVVIVVKDGP-GF----YTTRC--LGPMLAEVIRLLQE-GVDPKKLDKLTT 550 (737)
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCeEEEECCcC-Cc----hHHHH--HHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 33 467899999999999999999997632 22 22211 11556888877644 789999999974
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-12 Score=114.32 Aligned_cols=199 Identities=15% Similarity=0.136 Sum_probs=131.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-------------cCCCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------------YQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------------~~~~~~~~~~~aDivv~~~p~~ 138 (290)
|+|+|||+|.||..+|..|...|++|.+++| +++.+.+.+.|+. ..++.++..+.+|+|++++|.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence 5799999999999999999999999999999 6666666554432 134556666889999999986
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcC----CcEEeCccCCCCccccCCceEEEec----CC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKKPAEDGQLIFLAA----GD 210 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~----~~ 210 (290)
.+++.++ +.+.+.+.++.++|.+..+- ...+.+.+.+.+.. +.++.++..++......+.-.+..+ ..
T Consensus 79 ~~~~~~~---~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 79 YQLDAAI---PDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred cCHHHHH---HHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 4566666 34555667788888776653 34456666654432 2233333322211111111112232 22
Q ss_pred HHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHH---------------------HHH-HHHHHHHHHHHHCCCC-
Q 022909 211 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM---------------------GRS-CTFSYSFLTLEFVDFL- 267 (290)
Q Consensus 211 ~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~---------------------~~~-~~~~ea~~l~~~~G~~- 267 (290)
.+..+.+.++|...|..+....+.....|.|++.|... .++ ..+.|...++++.|++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35566788888888887777788888899998877542 234 6788999999999976
Q ss_pred -HHHHHHHHh
Q 022909 268 -INTVTMFLQ 276 (290)
Q Consensus 268 -~~~~~~~i~ 276 (290)
.+...+.+.
T Consensus 235 ~~~~~~~~~~ 244 (305)
T PRK12921 235 RDDVVEEIVK 244 (305)
T ss_pred ChhHHHHHHH
Confidence 445555443
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-13 Score=99.06 Aligned_cols=90 Identities=24% Similarity=0.407 Sum_probs=73.1
Q ss_pred eEEEEcccHhHHHHHHHHHHCC---CeEEE-EeCCccchhhHHh-CCCccCC-CHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAG---CDVTV-WNRTKSKCDPLIS-LGAKYQP-SPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g---~~V~~-~d~~~~~~~~~~~-~g~~~~~-~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
||||||+|+||.++++.|...| ++|.+ ++|++++..++++ .+..... +..++++++|+|++++|. +...+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHH-
Confidence 6999999999999999999999 89994 4999998888755 5555555 899999999999999965 7777877
Q ss_pred ccccccccCCCCCEEEEecCC
Q 022909 147 GKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~ 167 (290)
+++ ....+++++|+++.+
T Consensus 79 --~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 --SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp --HHH-HHHHTTSEEEEESTT
T ss_pred --HHH-hhccCCCEEEEeCCC
Confidence 334 667789999998643
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.4e-13 Score=116.73 Aligned_cols=110 Identities=21% Similarity=0.253 Sum_probs=86.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC--CCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+++++|+|+|.||+.+++.|+.+|++|++++|++++...+.+.+.... ++++++++++|+|++++|.+ ++ +
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii--~ 223 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VL--T 223 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----Hh--C
Confidence 799999999999999999999999999999999876655555554332 35678889999999999874 33 3
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCc
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p 190 (290)
++.++.|++++++||+++.+.... + +..++.|++.+-+|
T Consensus 224 ~~~l~~~k~~aliIDlas~Pg~td--f-~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 224 ADVLSKLPKHAVIIDLASKPGGTD--F-EYAKKRGIKALLAP 262 (287)
T ss_pred HHHHhcCCCCeEEEEeCcCCCCCC--H-HHHHHCCCEEEEeC
Confidence 445778999999999988665542 2 45677788776555
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-13 Score=108.14 Aligned_cols=136 Identities=17% Similarity=0.259 Sum_probs=96.0
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------------CCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
||+|||.|++|.++|..|...|++|.+|+|+++..+.+.+. .+..+++++++++++|+|++++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs- 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS- 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence 69999999999999999999999999999998777766652 233567899999999999999987
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCC-----hhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHH
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVD-----GDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKS 212 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~-----~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 212 (290)
...+.++ +++.+.++++..+|+++.|- ....+.+.+.+....+.++..|.+..+........+.+.+.+.+
T Consensus 80 ~~~~~~~---~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 80 QAHREVL---EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp GGHHHHH---HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred HHHHHHH---HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 5567777 56778889999999987554 11234444555544567777888877766655555556655554
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=108.05 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=90.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------------------CCccCCCHHHHhhcCCeE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDVT 131 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDiv 131 (290)
|||+|||+|.+|..+|..|+..|++|+++|.++++.+.+.+. .+...++.++.++++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 789999999999999999999999999999999887766541 234567888889999999
Q ss_pred EEEeCChhH------HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHH-HHHHcC-----CcEEeCccCCCCccc-
Q 022909 132 FAMLADPES------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING-HIKATG-----ASFLEAPVSGSKKPA- 198 (290)
Q Consensus 132 v~~~p~~~~------~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~-~l~~~~-----~~~~~~p~~~~~~~~- 198 (290)
++|+|.+.. +..+...-+.+.+.++++.++|.-|+..+..++++.. .+++.+ +.+..+|.+-.+...
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999997632 2222222245677789999999999999999996554 444433 345567866544332
Q ss_pred --cCCceEEEecCCH-HHHHHHHH
Q 022909 199 --EDGQLIFLAAGDK-SLYNTVAP 219 (290)
Q Consensus 199 --~~~~~~~~~~~~~-~~~~~v~~ 219 (290)
...+..++.|.++ .+.+.+++
T Consensus 161 ~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 161 EDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp HHHHSSSEEEEEESSHHHHHHHHH
T ss_pred hhccCCCEEEEeCCcHHHHHHHhc
Confidence 1223344555444 44335554
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-13 Score=104.26 Aligned_cols=111 Identities=26% Similarity=0.411 Sum_probs=70.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
.+||+|||+|++|..+++.|...|++|. +|+|+++..+++.+ .+.....+++|+++++|++++++|+ ..+..+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpD-daI~~va--- 85 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPD-DAIAEVA--- 85 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-C-CHHHHHH---
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEech-HHHHHHH---
Confidence 5899999999999999999999999987 55788766666554 2334455788899999999999988 4666665
Q ss_pred cccccc--CCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 149 HGAASG--MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 149 ~~~~~~--~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+++... .+++++++.+|.....+ +.+-+++.|.....
T Consensus 86 ~~La~~~~~~~g~iVvHtSGa~~~~---vL~p~~~~Ga~~~s 124 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTSGALGSD---VLAPARERGAIVAS 124 (127)
T ss_dssp HHHHCC--S-TT-EEEES-SS--GG---GGHHHHHTT-EEEE
T ss_pred HHHHHhccCCCCcEEEECCCCChHH---hhhhHHHCCCeEEE
Confidence 344444 78999999998765543 34445566655443
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-11 Score=109.01 Aligned_cols=201 Identities=19% Similarity=0.210 Sum_probs=129.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-----------cCCCHHHHhhcCCeEEEEeCChhH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-----------YQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-----------~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
|+|+|||+|.||..+|..|...|++|++++|++++.+.+.+.|.. ..++.+++ +.+|+|++++|. .+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-cc
Confidence 579999999999999999999999999999987777766665542 23455555 889999999975 55
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc----EEeCccCCCC--ccccCCceEEEec-CCHHH
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS----FLEAPVSGSK--KPAEDGQLIFLAA-GDKSL 213 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~----~~~~p~~~~~--~~~~~~~~~~~~~-~~~~~ 213 (290)
+..++ +.+.+.+.+++.+|....+- ...+.+.+.+....+. +...-..++- .....+...+-.. +..+.
T Consensus 79 ~~~~~---~~l~~~l~~~~~iv~~~nG~-~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 79 LPAAL---PSLAPLLGPDTPVLFLQNGV-GHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred HHHHH---HHHhhhcCCCCEEEEecCCC-CcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 67776 44566677788888776653 3344555555432221 1111011100 0112233222111 12234
Q ss_pred HHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHH---------------------HHH-HHHHHHHHHHHHCCCC--HH
Q 022909 214 YNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM---------------------GRS-CTFSYSFLTLEFVDFL--IN 269 (290)
Q Consensus 214 ~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~---------------------~~~-~~~~ea~~l~~~~G~~--~~ 269 (290)
.+.+.++|+..|..+....+.....|.|++.|... ..+ ..+.|...++++.|++ .+
T Consensus 155 ~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~ 234 (304)
T PRK06522 155 AEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVE 234 (304)
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChH
Confidence 67788889888887766777888888887766421 123 5678999999998865 45
Q ss_pred HHHHHHhhc
Q 022909 270 TVTMFLQSF 278 (290)
Q Consensus 270 ~~~~~i~~~ 278 (290)
.+.+.+...
T Consensus 235 ~~~~~~~~~ 243 (304)
T PRK06522 235 EVREYVRQV 243 (304)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-12 Score=104.90 Aligned_cols=190 Identities=13% Similarity=0.115 Sum_probs=132.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----------------------------CCccCCCH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----------------------------GAKYQPSP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----------------------------g~~~~~~~ 121 (290)
.+.|+|||.|.||+.||+..+..|++|.++|++++...+..+. .+...++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 6889999999999999999999999999999998765543220 12345678
Q ss_pred HHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE-EecCCChhHHHHHHHHHHHc----CCcEEe-CccCCCC
Q 022909 122 DEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKAT----GASFLE-APVSGSK 195 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li-n~s~~~~~~~~~l~~~l~~~----~~~~~~-~p~~~~~ 195 (290)
.+++.++|+||.++-.+.+++.-+++ ++-...++.+++. |+|+-. ..++..++++. |.||+. .|++...
T Consensus 91 ~~~v~dadliiEAivEn~diK~~lF~--~l~~~ak~~~il~tNTSSl~---lt~ia~~~~~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 91 SDAVSDADLIIEAIVENLDIKRKLFK--DLDKIAKSSTILATNTSSLS---LTDIASATQRPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred HHhhhhhHHHHHHHHHhHHHHHHHHH--HHHhhcccceEEeeccccee---HHHHHhhccChhhhceeeccCCchhHHHh
Confidence 88899999999999888887765532 3334456677664 333322 23455555443 667666 4555433
Q ss_pred ccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 022909 196 KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFL 275 (290)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i 275 (290)
..... ...+++.+..+..+-+.+|+.++.|.+.. .++.|-+ ++-.+.|++++.++-..+.|+++.++
T Consensus 166 EVir~------~~TS~eTf~~l~~f~k~~gKttVackDtp-----GFIVNRl--LiPyl~ea~r~yerGdAskeDIDtaM 232 (298)
T KOG2304|consen 166 EVIRT------DDTSDETFNALVDFGKAVGKTTVACKDTP-----GFIVNRL--LIPYLMEAIRMYERGDASKEDIDTAM 232 (298)
T ss_pred hhhcC------CCCCHHHHHHHHHHHHHhCCCceeecCCC-----chhhhHH--HHHHHHHHHHHHHhcCCcHhhHHHHH
Confidence 22211 12367899999999999999999888732 1333311 22556899999999999999999887
Q ss_pred hhc
Q 022909 276 QSF 278 (290)
Q Consensus 276 ~~~ 278 (290)
.-.
T Consensus 233 klG 235 (298)
T KOG2304|consen 233 KLG 235 (298)
T ss_pred hcc
Confidence 643
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=106.65 Aligned_cols=181 Identities=16% Similarity=0.108 Sum_probs=121.3
Q ss_pred CeEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHH
Q 022909 95 CDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSK 173 (290)
Q Consensus 95 ~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~ 173 (290)
++|.+++|++++.+.+.+ .|+....+..++++++|+|+++++ ++....++ +++...+.+++++|+++.+- ..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl---~~l~~~~~~~~~ivS~~agi--~~~ 83 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL---SELKSEKGKDKLLISIAAGV--TLE 83 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH---HHHhhhccCCCEEEEecCCC--CHH
Confidence 589999999988777655 577777888899999999999997 78888887 33444456778999885554 445
Q ss_pred HHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecC--CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHH
Q 022909 174 LINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGR 250 (290)
Q Consensus 174 ~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~ 250 (290)
.|.+.+... ..++. +|... ...+.+...+..+. +++..+.++++|+.+|..+ .+.+.....+.. +...--++
T Consensus 84 ~l~~~~~~~-~~ivR~mPn~~--~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~-~v~E~~~~~~ta-lsgsgPA~ 158 (245)
T TIGR00112 84 KLSQLLGGT-RRVVRVMPNTP--AKVGAGVTAIAANANVSEEDRALVLALFKAVGEVV-ELPEALMDAVTA-LSGSGPAY 158 (245)
T ss_pred HHHHHcCCC-CeEEEECCChH--HHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEE-EECHHHcchHHh-hccCcHHH
Confidence 666666432 23443 56542 22334444444332 4567889999999999855 454322222221 11122233
Q ss_pred HHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 251 SCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 251 ~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
++.+.|++ ..+.+.|++++++.+++.+++.|+..+.
T Consensus 159 ~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~ 195 (245)
T TIGR00112 159 VFLFIEALADAGVKQGLPRELALELAAQTVKGAAKLL 195 (245)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34555665 5789999999999999999999987653
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-10 Score=100.60 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=121.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhh-cCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
..+|||||+|+||+-+|+.+...|+.|..+||+. .....+..|....+.+.++++ ++|+|++|+ .-..++.++. .
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlct-silsiekila--t 127 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCT-SILSIEKILA--T 127 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEe-hhhhHHHHHH--h
Confidence 5789999999999999999999999999999986 334444578888888888876 599999998 4477788872 1
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCc--eEEEe---cCC----HHHHHHHHH
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQ--LIFLA---AGD----KSLYNTVAP 219 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~--~~~~~---~~~----~~~~~~v~~ 219 (290)
--++.++.|+++++..+...-....+.+.|++. ..++. +|++|+........ ..++. .+. ++..+.+.+
T Consensus 128 ypfqrlrrgtlfvdvlSvKefek~lfekYLPkd-fDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fle 206 (480)
T KOG2380|consen 128 YPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD-FDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLE 206 (480)
T ss_pred cCchhhccceeEeeeeecchhHHHHHHHhCccc-cceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHH
Confidence 124558999999999998888888888888764 55555 89999874332221 22221 122 678899999
Q ss_pred HHHHhCCcEEEeCCcchH
Q 022909 220 LLDIMGKSRFYLGDVGNG 237 (290)
Q Consensus 220 ll~~~G~~~~~~~~~g~a 237 (290)
++...|+..+++.-..+.
T Consensus 207 If~cegckmVemS~eeHD 224 (480)
T KOG2380|consen 207 IFACEGCKMVEMSYEEHD 224 (480)
T ss_pred HHHhcCCeEEEEEeeccc
Confidence 999999998887644333
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=113.94 Aligned_cols=105 Identities=13% Similarity=0.061 Sum_probs=85.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|+|+|+|.||+.+|++++.+|++|+++++++.+.......|.... +++++++.+|+|+.+.. +++++ +++
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTG----t~~vI--~~e 326 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTG----NKDII--MVD 326 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCC----Cccch--HHH
Confidence 799999999999999999999999999999999876555555666544 78899999999997543 34554 455
Q ss_pred ccccCCCCCEEEEecC-CChhHHHHHHHH--HHHc
Q 022909 151 AASGMGPGKGYVDVST-VDGDTSKLINGH--IKAT 182 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~-~~~~~~~~l~~~--l~~~ 182 (290)
.++.|+++++++|+++ ...++..+|.++ +++.
T Consensus 327 ~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~ 361 (477)
T PLN02494 327 HMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRI 361 (477)
T ss_pred HHhcCCCCCEEEEcCCCCCccCHHHHhhcccccee
Confidence 6889999999999999 568888888876 5444
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-11 Score=109.80 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=86.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|+|+|+|.||+.+++.++.+|++|+++++++.+.......|.... +++++++++|+||.++.. .+++ +.+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~----~~vI--~~~ 267 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGN----KDVI--RGE 267 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCC----HHHH--HHH
Confidence 899999999999999999999999999999999877655555666544 678899999999887643 4555 445
Q ss_pred ccccCCCCCEEEEecCCCh-hHHHHHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVDG-DTSKLINGHIKA 181 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~-~~~~~l~~~l~~ 181 (290)
.+..||+|++++|+++... ++.++|.+.+.+
T Consensus 268 ~~~~mK~GailiN~G~~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 268 HFENMKDGAIVANIGHFDVEIDVKALEELAVE 299 (406)
T ss_pred HHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence 6889999999999999987 888999887654
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-10 Score=95.36 Aligned_cols=166 Identities=11% Similarity=0.101 Sum_probs=110.3
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
|+|+|||. |.||+.+++.|...|+.|. ++++|+|++|+|. ..+..++ ++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv-~~~~~~i---~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPI-DAALNYI---ES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCH-HHHHHHH---HH
Confidence 58999997 9999999999999999985 3689999999987 5556666 11
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccC-CceEEEec--CCHHHHHHHHHHHHHhCC
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAED-GQLIFLAA--GDKSLYNTVAPLLDIMGK 226 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~-~~~~~~~~--~~~~~~~~v~~ll~~~G~ 226 (290)
+. .+++|+++.+... .+. ...|++ ||++|+...... ....+++. .+++..+.++++++ |.
T Consensus 51 ~~------~~v~Dv~SvK~~i----~~~----~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~ 114 (197)
T PRK06444 51 YD------NNFVEISSVKWPF----KKY----SGKIVSIHPLFGPMSYNDGVHRTVIFINDISRDNYLNEINEMFR--GY 114 (197)
T ss_pred hC------CeEEeccccCHHH----HHh----cCCEEecCCCCCCCcCcccccceEEEECCCCCHHHHHHHHHHHc--CC
Confidence 11 3789998887732 221 346777 999985543211 12333332 34566788999988 88
Q ss_pred cEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 227 SRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 227 ~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+++.+.+..+...+..++.+-+.+-.++.+ .. ..-.+-..+++.++.....++++.+
T Consensus 115 ~~~~~t~eeHD~~~A~ishLpH~ia~al~~-~~-~~~~t~~fr~l~ria~~~~~~~p~l 171 (197)
T PRK06444 115 HFVEMTADEHDLLMSEIMVKPYIISMILKD-IK-SDIKTGSFDKLLEVSEIKEKENWEV 171 (197)
T ss_pred EEEEeCHHHHHHHHHHHHHHHHHHHHHHcc-CC-CCCCCccHHHHHHHHHHhccCCHHH
Confidence 898899888888888887765433222222 11 1223335666666665555555444
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-10 Score=100.91 Aligned_cols=189 Identities=17% Similarity=0.154 Sum_probs=122.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc--------------cCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------------YQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--------------~~~~~~~~~~~aDivv~~~p 136 (290)
.|+|+|||+|.||..+|..|++.|++|+++.|++. +...+.|+. ..++. +....+|+|+++++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK 81 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLK 81 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEec
Confidence 58999999999999999999999999999999763 334443322 11122 34577999999998
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcC----CcEEeCccCCCCc--cccCCceEEE-ecC
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKK--PAEDGQLIFL-AAG 209 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~----~~~~~~p~~~~~~--~~~~~~~~~~-~~~ 209 (290)
.. ++..++ +.+.+.+.++..++....| ....+.+.+.+.+.. +.++++...++-. ....+...+- ..+
T Consensus 82 ~~-~~~~~~---~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~ 156 (313)
T PRK06249 82 TT-ANALLA---PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSG 156 (313)
T ss_pred CC-ChHhHH---HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCC
Confidence 64 455554 3345567778888877554 344556666664432 1122221211110 0112232221 112
Q ss_pred -C-----HHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHH---------------------HH-HHHHHHHHHH
Q 022909 210 -D-----KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG---------------------RS-CTFSYSFLTL 261 (290)
Q Consensus 210 -~-----~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~---------------------~~-~~~~ea~~l~ 261 (290)
+ .+..+.+.++|+..|..+...++.....|.|++.|...+ ++ ..+.|...++
T Consensus 157 ~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va 236 (313)
T PRK06249 157 PAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGA 236 (313)
T ss_pred CcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHH
Confidence 2 356677888999999988888889999999988764321 13 4678889999
Q ss_pred HHCCCC
Q 022909 262 EFVDFL 267 (290)
Q Consensus 262 ~~~G~~ 267 (290)
++.|++
T Consensus 237 ~a~Gi~ 242 (313)
T PRK06249 237 AACGHT 242 (313)
T ss_pred HhcCCC
Confidence 999986
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=101.48 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=85.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHH--CCCeEE-EEeCCccchhhHHh-CCC-ccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK--AGCDVT-VWNRTKSKCDPLIS-LGA-KYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~--~g~~V~-~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
.+||||||+|+||+.+++.+.. .++++. ++||++++.+.+.+ .+. ..+++++++++++|+|++|+|.... ..+.
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e~~ 84 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RAIV 84 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HHHH
Confidence 5899999999999999999986 377775 88999887766554 343 4567899999999999999987544 3333
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcE
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~ 186 (290)
...++.|..++..+.+...+.+++.+..++++.++
T Consensus 85 ------~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 85 ------EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred ------HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 34456777777777777777889999999888765
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.8e-11 Score=96.03 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=85.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHh-CCC----ccCCCHHHHhhcCCeEEEEeCChhH-HHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-LGA----KYQPSPDEVAASCDVTFAMLADPES-AMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~-~g~----~~~~~~~~~~~~aDivv~~~p~~~~-~~~ 143 (290)
+++|+|+|+|.||..+++.+...| .+|.+++|++++.+.+.+ .+. ....+.+++++++|+|++++|.... ...
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~ 98 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDE 98 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCC
Confidence 689999999999999999999986 789999999887766544 232 2345677778999999999987654 222
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
... ....++++.+++|++..+... .+.+.+++.|+.+++
T Consensus 99 ~~~----~~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~ 137 (155)
T cd01065 99 LPL----PPSLLKPGGVVYDVVYNPLET--PLLKEARALGAKTID 137 (155)
T ss_pred CCC----CHHHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeC
Confidence 221 113468999999998876544 888888888888876
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-10 Score=90.87 Aligned_cols=89 Identities=28% Similarity=0.319 Sum_probs=66.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc-chhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|||+|..|.+.|..|+..|.+|++..|... ..+..++.|.+.. +..|+++++|+|++.+|+ +....++ .+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD-~~q~~vy--~~ 79 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPD-EVQPEVY--EE 79 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-H-HHHHHHH--HH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCCh-HHHHHHH--HH
Confidence 79999999999999999999999999999988766 5566666788765 899999999999999986 4445665 46
Q ss_pred cccccCCCCCEEEE
Q 022909 150 GAASGMGPGKGYVD 163 (290)
Q Consensus 150 ~~~~~~~~~~~lin 163 (290)
++.+.|++|+.++-
T Consensus 80 ~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 80 EIAPNLKPGATLVF 93 (165)
T ss_dssp HHHHHS-TT-EEEE
T ss_pred HHHhhCCCCCEEEe
Confidence 77889999998763
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-09 Score=95.53 Aligned_cols=192 Identities=14% Similarity=0.050 Sum_probs=122.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-CCccC-----------CCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQ-----------PSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~-----------~~~~~~~~~aDivv~~~p~~ 138 (290)
.|||+|+|+|.||..+|-.|.+.|++|++++|++++.+.+.+. |+... ....+.....|+|++++ +.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v-K~ 80 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC-KA 80 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC-CH
Confidence 4789999999999999999999999999999987666655542 33210 01112245789999998 55
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc----EEeCccCCCCccccCCceEEEec-CCHHH
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS----FLEAPVSGSKKPAEDGQLIFLAA-GDKSL 213 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~-~~~~~ 213 (290)
.++...+ +.+.+.+.+++.+|-+-+|- ...+.+.+.+.+..+. ++++...++-.....+.-.+..| .+.+.
T Consensus 81 ~~~~~al---~~l~~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~~ 156 (305)
T PRK05708 81 YDAEPAV---ASLAHRLAPGAELLLLQNGL-GSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNPT 156 (305)
T ss_pred HhHHHHH---HHHHhhCCCCCEEEEEeCCC-CCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCcc
Confidence 6677776 45667788888887775554 3444566665433211 11111111000011111112233 22344
Q ss_pred HHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHH------------------HH-HHHHHHHHHHHHCCCC
Q 022909 214 YNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG------------------RS-CTFSYSFLTLEFVDFL 267 (290)
Q Consensus 214 ~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~------------------~~-~~~~ea~~l~~~~G~~ 267 (290)
.+.+.++|+..|..+....+.....|.|++.|...+ .+ ..+.|...++++.|++
T Consensus 157 ~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~ 229 (305)
T PRK05708 157 APAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQP 229 (305)
T ss_pred hHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCC
Confidence 567888888888877777788999999988775321 23 5677888899999875
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.3e-09 Score=92.83 Aligned_cols=207 Identities=17% Similarity=0.167 Sum_probs=135.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC------------CCHHHHhhcCCeEEEEeCChh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ------------PSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~------------~~~~~~~~~aDivv~~~p~~~ 139 (290)
|||.|+|+|.||.-++..|...|.+|+++.|.+. .+.+++.|+... ....+.+..+|+|++++ ++.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v-Ka~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV-KAY 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe-ccc
Confidence 6899999999999999999999988999888775 666766543221 12234556899999998 567
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc--EEeCc-cCCCCcc---ccCCceEE--EecCCH
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS--FLEAP-VSGSKKP---AEDGQLIF--LAAGDK 211 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~--~~~~p-~~~~~~~---~~~~~~~~--~~~~~~ 211 (290)
++..++ +.+.+.+++.+.++-.-.|-...+ .+.+...+..+- +..+. ...++.. ...+...+ ..++.+
T Consensus 79 q~~~al---~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 79 QLEEAL---PSLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cHHHHH---HHhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 888887 567788888887776655544433 666665544111 11111 1111110 11122221 222344
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHH---------------------H-HHHHHHHHHHHHCC--CC
Q 022909 212 SLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGR---------------------S-CTFSYSFLTLEFVD--FL 267 (290)
Q Consensus 212 ~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~---------------------~-~~~~ea~~l~~~~G--~~ 267 (290)
+..+.+.++|+..|..+.+..+.-...|.|++.|...+. + ..+.|....+.+.| ++
T Consensus 155 ~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~ 234 (307)
T COG1893 155 ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELP 234 (307)
T ss_pred HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 678888999999999888888899999999888765431 2 46778888888888 55
Q ss_pred H---HHHHHHHhhc--CCCCcc
Q 022909 268 I---NTVTMFLQSF--SFGNLQ 284 (290)
Q Consensus 268 ~---~~~~~~i~~~--~~gs~~ 284 (290)
. +.+.....++ ...|.|
T Consensus 235 ~~~~~~v~~~~~~~~~~~~sSM 256 (307)
T COG1893 235 EEVVERVLAVIRATDAENYSSM 256 (307)
T ss_pred HHHHHHHHHHHHhcccccCchH
Confidence 5 3444444554 344444
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=91.68 Aligned_cols=202 Identities=15% Similarity=0.143 Sum_probs=132.1
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC----eEEEEeCCccchhh-HHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDP-LISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~----~V~~~d~~~~~~~~-~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
+++|+||.|+|..++++.+.+.|. ++..+.++...... ++..|+..+.+..+.++.+|++++++ .+.....++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~sv-Kp~~i~~vl- 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSV-KPQVIESVL- 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEee-cchhHHHHh-
Confidence 579999999999999999999885 67777664333333 56678877766788999999999998 667777777
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecC--CHHHHHHHHHHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDI 223 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~ll~~ 223 (290)
.+.......+.+++.+.-|... ..+...+. ...+++. +|... ...+.+..++..+. ..++.+.++++++.
T Consensus 79 --s~~~~~~~~~~iivS~aaG~tl--~~l~~~l~-~~~rviRvmpNtp--~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~ 151 (267)
T KOG3124|consen 79 --SEIKPKVSKGKIIVSVAAGKTL--SSLESKLS-PPTRVIRVMPNTP--SVVGEGASVYAIGCHATNEDLELVEELLSA 151 (267)
T ss_pred --hcCccccccceEEEEEeecccH--HHHHHhcC-CCCceEEecCCCh--hhhhcCcEEEeeCCCcchhhHHHHHHHHHh
Confidence 3344446778899887655443 34555554 2334444 44432 22334443333332 35677899999999
Q ss_pred hCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCcc
Q 022909 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQ 284 (290)
Q Consensus 224 ~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~ 284 (290)
.|+.. .+.+.-...+..+.-.. -++.+.+.|++ +.+.+.|++++.++++..|+..|+.+
T Consensus 152 vG~~~-evpE~~iDavTgLsGSg-PAy~f~~ieaLadGgVkmGlPr~lA~~laaqtllGAak 211 (267)
T KOG3124|consen 152 VGLCE-EVPEKCIDAVTGLSGSG-PAYVFVAIEALADGGVKMGLPRQLAYRLAAQTLLGAAK 211 (267)
T ss_pred cCcce-eCcHHhhhHHhhccCCc-HHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHH
Confidence 99843 33321111111111110 11225567777 68899999999999999999988764
|
|
| >KOG0067 consensus Transcription factor CtBP [Transcription] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-11 Score=104.93 Aligned_cols=165 Identities=12% Similarity=0.015 Sum_probs=124.5
Q ss_pred cccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHH
Q 022909 7 SSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPM 86 (290)
Q Consensus 7 ~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~l 86 (290)
|++.-.+++ .-++-+++.+.|+-...-...++|.|...... . +.... ......+.+.|++|+|+.|+++
T Consensus 125 p~~~Ve~~a--~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q-~--~e~a~------g~~~~~G~~~g~~g~gr~g~av 193 (435)
T KOG0067|consen 125 PSDAVEETA--DSTLCHILNLYRRNTWLCQALREGTCTQGLEQ-V--REAAC------GLARIRGPTLGLIGFGRTGQAV 193 (435)
T ss_pred cchhHHHHH--HHHHHHHHhhhcccchhhhhhcccceeechhh-h--hhhhh------ccccccccceeeecccccccee
Confidence 444444333 33455666778888888888889988632110 0 00000 0001117899999999999999
Q ss_pred HHHHHHCCCeEEEEeCCccchhhHH-hCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEec
Q 022909 87 AQNLLKAGCDVTVWNRTKSKCDPLI-SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 87 a~~l~~~g~~V~~~d~~~~~~~~~~-~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
+.+...||..|+.||+.... -+. ..|...+.+++|++-++|-+.+++..+++..+++ +.-...+|+.|+.++|++
T Consensus 194 ~~~A~afg~~~ifydp~~~~--g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~li--n~~tikqm~qGaflvnta 269 (435)
T KOG0067|consen 194 ALRAKAFGFVVIFYDPYLID--GIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELI--NDFTIKQMRQGAFLVNTA 269 (435)
T ss_pred hhhhhcccceeeeecchhhh--hhhhhcccceecccchhhhhccceeeecccCccccccc--ccccceeecccceEeeec
Confidence 99999999999999986432 222 2567777789999999999999999999999999 666788999999999999
Q ss_pred CCChhHHHHHHHHHHHcCCcE
Q 022909 166 TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 166 ~~~~~~~~~l~~~l~~~~~~~ 186 (290)
++..+++.+|.++|+++.++.
T Consensus 270 ~gglvdekaLaqaLk~G~i~~ 290 (435)
T KOG0067|consen 270 RGGLVDEKALAQALKSGRIRG 290 (435)
T ss_pred ccccCChHHHHhhhccCceec
Confidence 999999999999999887663
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-10 Score=91.56 Aligned_cols=93 Identities=19% Similarity=0.198 Sum_probs=68.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
++++.|+|+|.+|+.+|+.|+..|.+|++++.+|-+.-++...|.... +++++++++|+++.++... .++ ..+
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~----~vi--~~e 95 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNK----DVI--TGE 95 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSS----SSB---HH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCc----ccc--CHH
Confidence 899999999999999999999999999999999977666555777765 7999999999999886542 233 234
Q ss_pred ccccCCCCCEEEEecCCChh
Q 022909 151 AASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~ 170 (290)
.++.||+++++.|++.....
T Consensus 96 ~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 96 HFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp HHHHS-TTEEEEESSSSTTS
T ss_pred HHHHhcCCeEEeccCcCcee
Confidence 47889999999999766544
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-10 Score=100.06 Aligned_cols=110 Identities=24% Similarity=0.310 Sum_probs=84.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC--CCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+++++|||+|.+|+.+++.|+.+|.+|++++|++++.+...+.|.... +++.+.++++|+||.++|.. ++ +
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~-----~i--~ 224 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPAL-----VL--T 224 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChh-----hh--h
Confidence 799999999999999999999999999999999877666666665533 35678889999999998753 23 3
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCc
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p 190 (290)
++.++.|+++.++||++....... + +..++.|+..+..+
T Consensus 225 ~~~l~~~~~g~vIIDla~~pggtd--~-~~a~~~Gv~~~~~~ 263 (296)
T PRK08306 225 KEVLSKMPPEALIIDLASKPGGTD--F-EYAEKRGIKALLAP 263 (296)
T ss_pred HHHHHcCCCCcEEEEEccCCCCcC--e-eehhhCCeEEEEEC
Confidence 455778999999999987654422 2 34566677766543
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.5e-10 Score=102.49 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=79.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|+|+|+|.||+.+++.++.+|++|+++|+++.+.......|... .+++++++.+|+||.++.. .+++ +.+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~----~~vI--~~~ 284 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGN----KDVI--TAE 284 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCC----HHHH--HHH
Confidence 89999999999999999999999999999999987765555566654 4788999999999987643 3445 445
Q ss_pred ccccCCCCCEEEEecCCCh-hHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVDG-DTSKLING 177 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~-~~~~~l~~ 177 (290)
.+..||+|++++|.++... .+...|.+
T Consensus 285 ~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 285 HMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 6888999999999998765 34444433
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-09 Score=98.24 Aligned_cols=195 Identities=13% Similarity=0.059 Sum_probs=116.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCC------ccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT------KSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~------~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
+++|+|||+|.+|++.|..++..|++|.+--|. .+..+.+.+.|... .+++|++++||+|++.+|.+ . .+.
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~-q~~ 112 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-Q-HSD 112 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-H-HHH
Confidence 899999999999999999999999998854443 33344444566655 68999999999999999997 3 555
Q ss_pred hcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-----ccCCceEE-Eec----CCHHH
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-----AEDGQLIF-LAA----GDKSL 213 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-----~~~~~~~~-~~~----~~~~~ 213 (290)
+ .+++++.||+|+.+. .|.|--+... ......++.++- +|=-.+... .+.|.+++ .+- .+..+
T Consensus 113 v--~~~i~p~LK~Ga~L~-fsHGFni~~~---~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a 186 (487)
T PRK05225 113 V--VRAVQPLMKQGAALG-YSHGFNIVEV---GEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEG 186 (487)
T ss_pred H--HHHHHhhCCCCCEEE-ecCCceeeeC---ceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchH
Confidence 5 478899999999875 3344332221 111122344333 443222211 12333332 222 23367
Q ss_pred HHHHHHHHHHhCCc---EEEeCCcchHHHHHHH--HHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHH
Q 022909 214 YNTVAPLLDIMGKS---RFYLGDVGNGAAMKLV--VNMIMGRSCTFSY-SFLTLEFVDFLINTVTMFL 275 (290)
Q Consensus 214 ~~~v~~ll~~~G~~---~~~~~~~g~a~~~k~~--~n~~~~~~~~~~e-a~~l~~~~G~~~~~~~~~i 275 (290)
.+.+......+|.. ++... ........+. +..+...+.+..+ .+.-..+.|.+++.+...+
T Consensus 187 ~~~ala~a~~iG~~ragv~~tt-f~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~ 253 (487)
T PRK05225 187 MAIAKAWAAATGGHRAGVLESS-FVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLI 253 (487)
T ss_pred HHHHHHHHHHhCCCccceeecc-hHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 78888888888875 32221 1111111111 1122333333333 3366688899999998644
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-08 Score=83.10 Aligned_cols=156 Identities=15% Similarity=0.193 Sum_probs=112.6
Q ss_pred CeEEEEcccHh--------------------HHHHHHHHHHCCCeEEEEeCCccch-----hhHHhCCCccCCCHHHHhh
Q 022909 72 GRIGFLGMGIM--------------------GTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQPSPDEVAA 126 (290)
Q Consensus 72 ~~IgiiG~G~i--------------------G~~la~~l~~~g~~V~~~d~~~~~~-----~~~~~~g~~~~~~~~~~~~ 126 (290)
|||.|+|+|+- |..+|-.++..||+|.+.+++.+-. +...+.|++.+++-.+..+
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~ 81 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAE 81 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhh
Confidence 66777777763 6778999999999999999986532 3344578999988889999
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhH-HHHHHHHHHHc--CCcEEe-CccCCCCccccCCc
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-SKLINGHIKAT--GASFLE-APVSGSKKPAEDGQ 202 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~-~~~l~~~l~~~--~~~~~~-~p~~~~~~~~~~~~ 202 (290)
++++.++-+|....|-.+. +++++.+++|+++.|+++.+++. ...|...|+.+ .+.+-+ +|- +.+....+.
T Consensus 82 ~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPA--gvPGtp~h~ 156 (340)
T COG4007 82 HGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPA--GVPGTPQHG 156 (340)
T ss_pred cceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCC--CCCCCCCCc
Confidence 9999999999988888887 77899999999999999888763 34454455433 222222 221 223333333
Q ss_pred eEEEecC--------CHHHHHHHHHHHHHhCCcEEEeC
Q 022909 203 LIFLAAG--------DKSLYNTVAPLLDIMGKSRFYLG 232 (290)
Q Consensus 203 ~~~~~~~--------~~~~~~~v~~ll~~~G~~~~~~~ 232 (290)
..++.+. +++.+++..++.++.|+.+|.+.
T Consensus 157 ~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 157 HYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred eEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecC
Confidence 3334321 35777889999999999988765
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=88.16 Aligned_cols=205 Identities=12% Similarity=0.108 Sum_probs=143.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-----------HhCC--------------CccCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG--------------AKYQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g--------------~~~~~~~~~~~ 125 (290)
-.||+|+|.|-+|+..|..++..|++|..||..++....+ .+.| +..++++.|+.
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 3689999999999999999999999999999987654321 1112 23567999999
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEE
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 205 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~ 205 (290)
+.+=.|-.|+|..-+.+.-+++ .++.+-....|+..|+ +......+.+-|.++.-..+.||+-.+. . -+++-
T Consensus 83 k~Ai~iQEcvpE~L~lkk~ly~---qlD~i~d~~tIlaSST-St~mpS~~s~gL~~k~q~lvaHPvNPPy-f---iPLvE 154 (313)
T KOG2305|consen 83 KGAIHIQECVPEDLNLKKQLYK---QLDEIADPTTILASST-STFMPSKFSAGLINKEQCLVAHPVNPPY-F---IPLVE 154 (313)
T ss_pred hhhhhHHhhchHhhHHHHHHHH---HHHHhcCCceEEeccc-cccChHHHhhhhhhhhheeEecCCCCCc-c---cchhe
Confidence 9999999999988887776632 2444444444444433 3333444555555554456666653221 0 11222
Q ss_pred Eec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCC
Q 022909 206 LAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGN 282 (290)
Q Consensus 206 ~~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs 282 (290)
++. .+++++++.+++.+.+|..++.....-.+.++..++. +.++|.-.+....+++..+++.+++...+-.
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~------Ailne~wrLvasGil~v~dvD~VmS~GLG~R 228 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQY------AILNETWRLVASGILNVNDVDAVMSAGLGPR 228 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhCCCCcccccccccceeccccH------HHHHHHHHHHHccCcchhhHHHHHhcCCCcc
Confidence 222 4678999999999999998887765544554443333 4567888899999999999999999999999
Q ss_pred ccccCCC
Q 022909 283 LQYDGNF 289 (290)
Q Consensus 283 ~~~~~~~ 289 (290)
..|.|++
T Consensus 229 YAflG~l 235 (313)
T KOG2305|consen 229 YAFLGPL 235 (313)
T ss_pred hhcccch
Confidence 8888864
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=97.33 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=76.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|+|+|+|.||..+++.++.+|.+|+++|+++.+.+.....|.... +.+++++.+|+|+.++... +++ +.+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~----~~i--~~~ 274 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNK----DII--TGE 274 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCH----HHH--HHH
Confidence 899999999999999999999999999999999988877777777544 5678889999999886442 344 344
Q ss_pred ccccCCCCCEEEEecCCC
Q 022909 151 AASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~ 168 (290)
.++.|++|.+++|+++..
T Consensus 275 ~l~~mk~GgilvnvG~~~ 292 (413)
T cd00401 275 HFEQMKDGAIVCNIGHFD 292 (413)
T ss_pred HHhcCCCCcEEEEeCCCC
Confidence 578899999999999764
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-08 Score=85.51 Aligned_cols=108 Identities=17% Similarity=0.241 Sum_probs=80.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-CCccCCCHHHHhh-cCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~-~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+++|+|+|+|+||+.+++.|..+|++|+++|+++++.+.+.+. +....+ .++++. ++|+++.+.... ++ +
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~-~~~l~~~~~Dv~vp~A~~~-----~I--~ 99 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVA-PEEIYSVDADVFAPCALGG-----VI--N 99 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEc-chhhccccCCEEEeccccc-----cc--C
Confidence 7999999999999999999999999999999998877766553 655553 355654 799998665433 33 3
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++.++.++ ..+++.-+.+...+ .+-.+.|+++|+.|++
T Consensus 100 ~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 100 DDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGILYAP 137 (200)
T ss_pred HHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCEEeC
Confidence 33445565 45677766665543 5667888999999875
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.4e-08 Score=84.57 Aligned_cols=205 Identities=15% Similarity=0.139 Sum_probs=145.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHh-------------------CCCccCCCHHHHhhcCCe
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDV 130 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDi 130 (290)
++|+.||+|.+|......++-. ..+|+++|.+..+...+.. .++.+.++.+..++++|+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 6899999999999887776543 3578899988766543321 134456789999999999
Q ss_pred EEEEeCChhHHHHHhcc-----------cccccccCCCCCEEEEecCCChhHHHHHHHHHHHc--CCc--EEeCccCCCC
Q 022909 131 TFAMLADPESAMDVACG-----------KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GAS--FLEAPVSGSK 195 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~-----------~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~--~~~--~~~~p~~~~~ 195 (290)
|++.+..+..+.++=.+ .+.+.+.-...++++.-|+.++...+.+...|... |+. +++.|.|-.+
T Consensus 82 vfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpeflae 161 (481)
T KOG2666|consen 82 VFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLAE 161 (481)
T ss_pred EEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhcc
Confidence 99999776555443211 11122334567899999999999998988888633 554 5667766544
Q ss_pred cccc---CCceEEEecCCH-----HHHHHHHHHHHHhCC-cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC
Q 022909 196 KPAE---DGQLIFLAAGDK-----SLYNTVAPLLDIMGK-SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVD 265 (290)
Q Consensus 196 ~~~~---~~~~~~~~~~~~-----~~~~~v~~ll~~~G~-~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G 265 (290)
..+. ..+--++.||.+ .+++.+..+++.+-. .-+.+....+++..|++.|.+.+.. .+++....+|+..|
T Consensus 162 gtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatg 241 (481)
T KOG2666|consen 162 GTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATG 241 (481)
T ss_pred cchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence 3332 122245666642 566777777887743 3345677899999999999988887 88888889999999
Q ss_pred CCHHHHHHHHh
Q 022909 266 FLINTVTMFLQ 276 (290)
Q Consensus 266 ~~~~~~~~~i~ 276 (290)
.|..++..++.
T Consensus 242 adv~eva~avg 252 (481)
T KOG2666|consen 242 ADVSEVAYAVG 252 (481)
T ss_pred CCHHHHHHHhc
Confidence 99999988874
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.4e-09 Score=89.58 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=78.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHC--CCe-EEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA--GCD-VTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~--g~~-V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
+||||||+|.||+.+++.+... +++ +.++|+++++.+.+.+ .+...++++++++.++|+|++|+|. .......
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~-~~~~~~~-- 78 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV-NAVEEVV-- 78 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh-HHHHHHH--
Confidence 6899999999999999999875 455 5588999887776654 4566678899999999999999875 3334443
Q ss_pred cccccccCCCCCEEEEecCCC---hhHHHHHHHHHHHcCCcE
Q 022909 148 KHGAASGMGPGKGYVDVSTVD---GDTSKLINGHIKATGASF 186 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~---~~~~~~l~~~l~~~~~~~ 186 (290)
...++.|..++..|.+. ....+++.+..++.+..+
T Consensus 79 ----~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l 116 (265)
T PRK13304 79 ----PKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKI 116 (265)
T ss_pred ----HHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEE
Confidence 23345566666666543 334567777787777553
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-08 Score=91.43 Aligned_cols=109 Identities=15% Similarity=0.238 Sum_probs=82.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CC-CeEEEEeCCccchhhHHhC----C--CccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g-~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
.++|+|||+|.+|+.+++.+.. ++ .+|.+|+|++++.+.+.+. + +..+.+.+++++++|+|+.++|.+ .
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---~ 201 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---E 201 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---C
Confidence 5899999999999999986654 44 6899999999888776653 3 455678899999999998888754 3
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.++ . .+++++|+ +||.........+++...+.++...|++
T Consensus 202 pvl--~---~~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD 241 (314)
T PRK06141 202 PLV--R---GEWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVD 241 (314)
T ss_pred CEe--c---HHHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEc
Confidence 444 1 25678998 5666666666667777766666666777
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=82.16 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=102.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-------CCeEEEEeCCccchh---hHHh------C------------CCccCCCHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-------GCDVTVWNRTKSKCD---PLIS------L------------GAKYQPSPD 122 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-------g~~V~~~d~~~~~~~---~~~~------~------------g~~~~~~~~ 122 (290)
..+|+|||.|++|+++|+.+... ..+|..|-+..+... .+.+ . ++..++|+.
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ 100 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLV 100 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHH
Confidence 58999999999999999998652 236777755432211 2211 0 344568999
Q ss_pred HHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCCh--------hHH-HHHHHHHHHcCCcEEeCccCC
Q 022909 123 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG--------DTS-KLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 123 ~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~--------~~~-~~l~~~l~~~~~~~~~~p~~~ 193 (290)
++++++||++..+|. +.+..++ +++....+++...|+++-|-- ... +.+.++|. -.+.++..|.+.
T Consensus 101 ea~~dADilvf~vPh-Qf~~~ic---~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg-I~~~vL~GaNiA 175 (372)
T KOG2711|consen 101 EAAKDADILVFVVPH-QFIPRIC---EQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALG-IPCSVLMGANIA 175 (372)
T ss_pred HHhccCCEEEEeCCh-hhHHHHH---HHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhC-CCceeecCCchH
Confidence 999999999999987 6677777 567888999999998864322 112 22333332 234577777777
Q ss_pred CCccccCCceEEEecCCH-HHHHHHHHHHHHhCCcEEEeCC
Q 022909 194 SKKPAEDGQLIFLAAGDK-SLYNTVAPLLDIMGKSRFYLGD 233 (290)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-~~~~~v~~ll~~~G~~~~~~~~ 233 (290)
.+.....-.-..+.+.++ +.-..+.++|+.--++++.+.|
T Consensus 176 ~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D 216 (372)
T KOG2711|consen 176 SEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVED 216 (372)
T ss_pred HHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEecc
Confidence 665543333333333333 3333588888877777776655
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.3e-08 Score=85.80 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=62.5
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|||.| .||+.+|.+|.+.|+.|++|+++.. ++.++.++||+|+++++.+..+..
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~------ 218 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDA------ 218 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccH------
Confidence 8999999996 9999999999999999999987542 678889999999999988654433
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
..+++|+++||+|.
T Consensus 219 ---~~ik~GaiVIDvgi 232 (301)
T PRK14194 219 ---DWLKPGAVVIDVGI 232 (301)
T ss_pred ---hhccCCcEEEEecc
Confidence 23789999999974
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-07 Score=70.46 Aligned_cols=108 Identities=17% Similarity=0.265 Sum_probs=79.1
Q ss_pred CeEEEEcccHhHHHHHHHHHHC--CCeE-EEEeCCccchhhHHh-CCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA--GCDV-TVWNRTKSKCDPLIS-LGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~--g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~ 145 (290)
++|||||+|.+|+.....+... +.++ .++|+++++.+.+.+ .++..+++++++++ +.|+|++++|.......+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 3799999999999999998876 4465 488999888777654 78888899999998 6899999998866554433
Q ss_pred cccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcE
Q 022909 146 CGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~ 186 (290)
..++.|..++--= .....+.+++.+..++.+..+
T Consensus 81 -------~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 81 -------KALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp -------HHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred -------HHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 3344444433221 345667778888888777553
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-08 Score=78.10 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=66.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhC--C----CccCCCHHHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISL--G----AKYQPSPDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~--g----~~~~~~~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
++++.|||+|.+|++++..|...|.+ |++++|+.++.+.+.+. + ....+++.+.+.++|+||.++|.+..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~--- 88 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP--- 88 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST---
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc---
Confidence 79999999999999999999999986 99999999888877652 1 22345677778999999999987643
Q ss_pred HhcccccccccCCCC-CEEEEecC
Q 022909 144 VACGKHGAASGMGPG-KGYVDVST 166 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~-~~lin~s~ 166 (290)
.+ .++.++...+. .+++|.+.
T Consensus 89 ~i--~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 89 II--TEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp SS--THHHHTTTCHHCSEEEES-S
T ss_pred cc--CHHHHHHHHhhhhceecccc
Confidence 22 22223333222 48899863
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-07 Score=76.69 Aligned_cols=94 Identities=19% Similarity=0.297 Sum_probs=71.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHC--CC-eEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA--GC-DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~--g~-~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
++|||||||.||..+.+.+..- +. .+.+||++.++...+.+ .+...+++++|++++.|+++.|. ..+.++...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaA-S~~Av~e~~-- 77 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAA-SPEAVREYV-- 77 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeC-CHHHHHHHh--
Confidence 4799999999999999998753 34 47799999998877665 44555689999999999999997 556666665
Q ss_pred cccccccCCCCCEEEEecCCChhHH
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTS 172 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~ 172 (290)
.+.++.|.-+|-+|.|...++
T Consensus 78 ----~~~L~~g~d~iV~SVGALad~ 98 (255)
T COG1712 78 ----PKILKAGIDVIVMSVGALADE 98 (255)
T ss_pred ----HHHHhcCCCEEEEechhccCh
Confidence 455677666666666666644
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-08 Score=89.03 Aligned_cols=94 Identities=22% Similarity=0.352 Sum_probs=71.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCc---cC---CCHHHHhhcCCeEEEEeCChh-HHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAK---YQ---PSPDEVAASCDVTFAMLADPE-SAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~---~~---~~~~~~~~~aDivv~~~p~~~-~~~ 142 (290)
+.+|.|||+|.+|+..++.+..+|.+|.++|+++++.+.+.. .+.. .. .++.+.++++|+||.+++.+. ...
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p 246 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAP 246 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCC
Confidence 578999999999999999999999999999999877666544 2221 11 245677889999999975422 223
Q ss_pred HHhcccccccccCCCCCEEEEecC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++ .++.++.|+++.++||++-
T Consensus 247 ~li--t~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 247 KLV--SNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred cCc--CHHHHhcCCCCCEEEEEec
Confidence 344 4566788999999999973
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-07 Score=80.55 Aligned_cols=148 Identities=19% Similarity=0.192 Sum_probs=95.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|||+|.-|.+-|..|+..|.+|++--|.... .+.+.+.|..+. +.+|+++++|+|.+.+|+ .....++ .+
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PD-e~q~~vy--~~ 93 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPD-EQQKEVY--EK 93 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCch-hhHHHHH--HH
Confidence 899999999999999999999999999877776554 455556777755 899999999999999987 4445666 45
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-----ccCCceEEEe-c--CCHHHHHHHHHH
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-----AEDGQLIFLA-A--GDKSLYNTVAPL 220 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-----~~~~~~~~~~-~--~~~~~~~~v~~l 220 (290)
++.+.|++|+.+. .+.|--+.... .-..+++.++- +|=-.+... .+.+.++++. - .+..+.+.+...
T Consensus 94 ~I~p~Lk~G~aL~-FaHGfNihf~~---i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~ 169 (338)
T COG0059 94 EIAPNLKEGAALG-FAHGFNIHFGL---IVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAY 169 (338)
T ss_pred HhhhhhcCCceEE-eccccceecce---ecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHH
Confidence 7788999998653 33433222211 11122333222 332221111 1233333222 1 234677788888
Q ss_pred HHHhCC
Q 022909 221 LDIMGK 226 (290)
Q Consensus 221 l~~~G~ 226 (290)
...+|.
T Consensus 170 AkgiGg 175 (338)
T COG0059 170 AKGIGG 175 (338)
T ss_pred HHhcCC
Confidence 888874
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.4e-07 Score=81.26 Aligned_cols=72 Identities=31% Similarity=0.426 Sum_probs=61.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEe-CCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWN-RTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d-~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+++|+||| .|.||+.+|.+|...|+.|++|+ |++ ++++++++||+|+++++.+.....
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~----- 217 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKG----- 217 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcch-----
Confidence 89999999 99999999999999999999995 543 467889999999999988654332
Q ss_pred ccccccCCCCCEEEEecC
Q 022909 149 HGAASGMGPGKGYVDVST 166 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~ 166 (290)
.++++|+++||++.
T Consensus 218 ----~~lk~GavVIDvGi 231 (296)
T PRK14188 218 ----DWIKPGATVIDVGI 231 (296)
T ss_pred ----heecCCCEEEEcCC
Confidence 23889999999964
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-07 Score=81.55 Aligned_cols=112 Identities=25% Similarity=0.281 Sum_probs=80.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC----CCccCCCHHHH-hhcCCeEEEEeCChh--HHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEV-AASCDVTFAMLADPE--SAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~~-~~~aDivv~~~p~~~--~~~~ 143 (290)
++++.|+|+|.+|++++..|...|++|.+++|++++.+.+.+. +.....+.++. ..++|+||.++|... ....
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~ 196 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDE 196 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCC
Confidence 6889999999999999999999999999999998776665442 21112233332 357999999998642 1111
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
... ..+.++++.+++|++..+..+ .+.+..++.|+.+++
T Consensus 197 ~~~----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 197 PPV----PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID 235 (270)
T ss_pred CCC----CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence 110 134578899999998877655 578888888887766
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=84.38 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=70.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHh----CC--CccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLIS----LG--AKYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~----~g--~~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
.+++||||+|.+|+..++.+... ..+|.+|||++++.+.+.+ .+ +..+++.+++++++|+|+.|+|...
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~--- 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK--- 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---
Confidence 48899999999999988887653 3589999999988776644 34 3457899999999999999997643
Q ss_pred HHhcccccccccCCCCCEEEEecCCCh
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~ 169 (290)
.++ . .++++||+++..+++-.+
T Consensus 205 P~~--~---~~~l~~g~~v~~vGs~~p 226 (325)
T TIGR02371 205 PVV--K---ADWVSEGTHINAIGADAP 226 (325)
T ss_pred cEe--c---HHHcCCCCEEEecCCCCc
Confidence 444 1 356799999888876554
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-07 Score=77.41 Aligned_cols=107 Identities=17% Similarity=0.206 Sum_probs=74.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC---CeE-EEEeCCccchhhHHhCCCccCCCHHHH-hhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG---CDV-TVWNRTKSKCDPLISLGAKYQPSPDEV-AASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g---~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~-~~~aDivv~~~p~~~~~~~~~ 145 (290)
.+||||||+|.||+.+++.+..-+ +++ .+++|++++.+.+.+. ...+.+++++ ....|+|+.|.+ .+.+++.-
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~-~~av~e~~ 79 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAG-QQAIAEHA 79 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCC-HHHHHHHH
Confidence 589999999999999999987532 444 4677777666666554 6778899997 578999999974 45555543
Q ss_pred cccccccccCCCCCEEEEecCCChhH---HHHHHHHHHHcCCc
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDT---SKLINGHIKATGAS 185 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~---~~~l~~~l~~~~~~ 185 (290)
.+.++.|.-++-.|-+...| .+.+.+..++.+.+
T Consensus 80 ------~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~ 116 (267)
T PRK13301 80 ------EGCLTAGLDMIICSAGALADDALRARLIAAAEAGGAR 116 (267)
T ss_pred ------HHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCE
Confidence 34456676666666666654 45566666665433
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4e-06 Score=69.53 Aligned_cols=188 Identities=14% Similarity=0.078 Sum_probs=120.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
.+.+++||.|+.|++...+...-++.+. +..|++++...+.+.-.-...+.+.-.+-.+++++.+|.. ...++.
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~va---- 84 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVA---- 84 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHH----
Confidence 4789999999999997777766677665 4467777666666522222224444444568888888764 344443
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCC--CCccc---cCCceEEEecCCHHHHHHHHHHHHH
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSG--SKKPA---EDGQLIFLAAGDKSLYNTVAPLLDI 223 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~--~~~~~---~~~~~~~~~~~~~~~~~~v~~ll~~ 223 (290)
.-..-+||++++.||..... .+.+.+.+.|..-.. +|.|. +.+.. ..+....+..+|+.-...++++...
T Consensus 85 -a~~~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~e 160 (289)
T COG5495 85 -ATSLNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALE 160 (289)
T ss_pred -HhcccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHH
Confidence 13446799999999765443 445555555544333 67543 22221 3456565656776666788999999
Q ss_pred hCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCH
Q 022909 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLI 268 (290)
Q Consensus 224 ~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~ 268 (290)
+|..++.+.+. .-.......+...+.. ..+.++..+-+..|.|.
T Consensus 161 mgg~~f~V~~~-~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq 205 (289)
T COG5495 161 MGGEPFCVREE-ARILYHAAAVHASNFIVTVLADALEIYRAAGDDQ 205 (289)
T ss_pred hCCCceeechh-HHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 99988766553 3334444444444444 66788888889999874
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.7e-07 Score=82.01 Aligned_cols=107 Identities=21% Similarity=0.272 Sum_probs=79.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhCC---C-------ccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLG---A-------KYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~g---~-------~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
++|.|||+|.+|+.+|..|+..| .+|++.||++++..++.+.. + .-.+.+.+++++.|+|+.+.|....
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 78999999999999999999998 89999999998887775532 2 2234577889999999999987554
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcE
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~ 186 (290)
. .++ ...++.|...+|+|-..... .++.+..++.|+..
T Consensus 82 ~-~i~------ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~ 119 (389)
T COG1748 82 L-TIL------KACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITA 119 (389)
T ss_pred H-HHH------HHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEE
Confidence 3 333 24456777788887555543 56666666666543
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.9e-07 Score=82.17 Aligned_cols=92 Identities=24% Similarity=0.342 Sum_probs=66.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHh-CCCccC--CCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-LGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~-~g~~~~--~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
+++|+|||+|.||+.+++.+...| .+|++++|++++...+++ .|.... +++.+.+.++|+||.++|.+.. ..++
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~- 255 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIV- 255 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHH-
Confidence 799999999999999999999866 689999999887766655 444322 3456778899999999987554 3333
Q ss_pred ccccccccC-CCCCEEEEecC
Q 022909 147 GKHGAASGM-GPGKGYVDVST 166 (290)
Q Consensus 147 ~~~~~~~~~-~~~~~lin~s~ 166 (290)
+...+.. .++.++||++.
T Consensus 256 --~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 256 --ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred --HHHHhhCCCCCeEEEEeCC
Confidence 1112222 35678899874
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.3e-07 Score=79.66 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCC-eEEEEeCCccchhhHHhC----CCcc-CCCHHHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLISL----GAKY-QPSPDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~-~V~~~d~~~~~~~~~~~~----g~~~-~~~~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
.++++|||+|.+|+..++.+.. ++. +|.+|+|++++.+.+.+. +... +++.+++++++|+|+.++|.+. .
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---P 201 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---P 201 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---c
Confidence 5899999999999999999975 564 799999999887776552 2222 4688899999999999998754 4
Q ss_pred HhcccccccccCCCCCEEEEecCCChh
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~ 170 (290)
++ . .+++||++++.+++-.+.
T Consensus 202 l~--~----~~~~~g~hi~~iGs~~p~ 222 (304)
T PRK07340 202 VY--P----EAARAGRLVVAVGAFTPD 222 (304)
T ss_pred ee--C----ccCCCCCEEEecCCCCCC
Confidence 55 1 247999999888765553
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7e-07 Score=68.69 Aligned_cols=113 Identities=23% Similarity=0.282 Sum_probs=69.8
Q ss_pred CeEEEEcc-cHhHHHHHHHHHH-CCCeE-EEEeCCccch-----hhH---HhCCCccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLK-AGCDV-TVWNRTKSKC-----DPL---ISLGAKYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~-~g~~V-~~~d~~~~~~-----~~~---~~~g~~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
+||+|+|+ |+||+.+++.+.. .++++ .+++++++.. ..+ ...++...++++++++.+|++|-.. .++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 58999999 9999999999998 67775 4778776211 111 1245677789999999999998876 6666
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccC
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~ 192 (290)
+...+ ...++.+..+|--++|-.....+..+.+.++ +.++-+|+|
T Consensus 80 ~~~~~------~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a~Nf 124 (124)
T PF01113_consen 80 VYDNL------EYALKHGVPLVIGTTGFSDEQIDELEELAKK-IPVLIAPNF 124 (124)
T ss_dssp HHHHH------HHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-SSS
T ss_pred hHHHH------HHHHhCCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEeCCC
Confidence 66555 2223446666665566644443444444333 666666654
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=78.29 Aligned_cols=111 Identities=13% Similarity=0.246 Sum_probs=82.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCC-eEEEEeCCccchhhHHh----C-C--CccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLIS----L-G--AKYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~-~V~~~d~~~~~~~~~~~----~-g--~~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
-.+++|||+|..+....+.+.. ++. +|.+|+|+++..+.+.. . + +..+++.++++++||+|+.++|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4789999999999999999976 444 79999999988877653 2 2 4677899999999999999998765
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHH-HHHcCCcEEeCc
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH-IKATGASFLEAP 190 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~-l~~~~~~~~~~p 190 (290)
.++ ..++++||++|..++.-.+.. .++... +.+.+.-+++.+
T Consensus 208 -Pil-----~~~~l~~G~hI~aiGad~p~k-~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 208 -PVL-----KAEWLKPGTHINAIGADAPGK-RELDPEVLARADRVVVDSL 250 (330)
T ss_pred -Cee-----cHhhcCCCcEEEecCCCCccc-ccCCHHHHHhcCeEEEcCH
Confidence 555 146789999988776554433 344333 333346677743
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.2e-07 Score=77.69 Aligned_cols=114 Identities=25% Similarity=0.211 Sum_probs=79.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhC-C----CccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-G----AKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~-g----~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
++++.|+|+|.+|++++..|...| .+|++++|+.++.+.+.+. + +....+..+.+.++|+||.++|....-..-
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~ 202 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGELP 202 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCCCC
Confidence 689999999999999999999999 6899999998887766542 1 111113346678899999999865421100
Q ss_pred hcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
. ..-..+.++++.+++|+.-.+.. + .+.+..++.|+.+++
T Consensus 203 ~--~~~~~~~l~~~~~v~DivY~P~~-T-~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 203 L--PPLPLSLLRPGTIVYDMIYGPLP-T-PFLAWAKAQGARTID 242 (278)
T ss_pred C--CCCCHHHcCCCCEEEEeecCCCC-C-HHHHHHHHCcCeecC
Confidence 0 01113457888999999764433 2 566677777776654
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.4e-06 Score=72.63 Aligned_cols=190 Identities=17% Similarity=0.112 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc--------------cCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------------YQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--------------~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
||..+|..|...|++|.+++|+ ++.+.+.+.|+. ..+++++ +...|+|+++++. .++...+
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs-~~~~~~l-- 76 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKA-YQTEEAA-- 76 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccc-hhHHHHH--
Confidence 7899999999999999999997 445556554421 1223344 5689999999976 4567776
Q ss_pred cccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc----EEeCccCCCCcc--ccCCceEEEec-CCHHHHHHHHHH
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS----FLEAPVSGSKKP--AEDGQLIFLAA-GDKSLYNTVAPL 220 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~----~~~~p~~~~~~~--~~~~~~~~~~~-~~~~~~~~v~~l 220 (290)
+.+.+.+.+++++|.+..|- ...+.+.+.+.+..+. +..+-..++-.. ...+...+-.. +..+..+.+.++
T Consensus 77 -~~l~~~l~~~~~iv~~qNG~-g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 77 -ALLLPLIGKNTKVLFLQNGL-GHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred -HHhHhhcCCCCEEEEccCCC-CCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 45667778888888776553 3344555555433211 111111111000 11122221111 112456678888
Q ss_pred HHHhCCcEEEeCCcchHHHHHHHHHHHH---------------------HHH-HHHHHHHHHHHHCCCC--HHHHHHHHh
Q 022909 221 LDIMGKSRFYLGDVGNGAAMKLVVNMIM---------------------GRS-CTFSYSFLTLEFVDFL--INTVTMFLQ 276 (290)
Q Consensus 221 l~~~G~~~~~~~~~g~a~~~k~~~n~~~---------------------~~~-~~~~ea~~l~~~~G~~--~~~~~~~i~ 276 (290)
|+..|..+....+.....|.|++.|... ..+ ..+.|...++++.|++ .+.+.+.+.
T Consensus 155 l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~ 234 (293)
T TIGR00745 155 LNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEELVR 234 (293)
T ss_pred HHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 8888887777788888888888766421 223 5678999999999865 444555554
Q ss_pred hc
Q 022909 277 SF 278 (290)
Q Consensus 277 ~~ 278 (290)
..
T Consensus 235 ~~ 236 (293)
T TIGR00745 235 AV 236 (293)
T ss_pred HH
Confidence 43
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=78.91 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=70.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCC-eEEEEeCCccchhhHHh-----CCC--ccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLIS-----LGA--KYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~-~V~~~d~~~~~~~~~~~-----~g~--~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.++++|||+|.+|+..+..+.. .+. +|.+|+|++++.+++.+ .++ ..+++.+++++++|+|+.++|.+
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--- 203 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--- 203 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC---
Confidence 5789999999999999988753 454 79999999988776654 233 34678899999999999999865
Q ss_pred HHHhcccccccccCCCCCEEEEecCCCh
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~ 169 (290)
..++ . +++++|++++.+++-.+
T Consensus 204 ~p~i-----~-~~l~~G~hV~~iGs~~p 225 (325)
T PRK08618 204 TPVF-----S-EKLKKGVHINAVGSFMP 225 (325)
T ss_pred Ccch-----H-HhcCCCcEEEecCCCCc
Confidence 2444 2 56799999988876544
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.7e-06 Score=73.87 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=72.8
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
++|+|+|+ |+||+.+++.+... ++++. ++|+++++.......++...++++++++++|+|+.++|... .....
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~-~~~~~--- 77 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEA-TLENL--- 77 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHH-HHHHH---
Confidence 68999998 99999999998864 67755 68888765443333456667899999989999998875433 34433
Q ss_pred ccccccCCCCCEEEEecCC-ChhHHHHHHHHHHHcCCcEEeCccC
Q 022909 149 HGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPVS 192 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~-~~~~~~~l~~~l~~~~~~~~~~p~~ 192 (290)
...++.|..++-.+++ ...+.+++.+ .. +++.++-.|.+
T Consensus 78 ---~~al~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~n~ 117 (257)
T PRK00048 78 ---EFALEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAPNF 117 (257)
T ss_pred ---HHHHHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEECcc
Confidence 3345556655533333 3444445555 33 45555555544
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=76.19 Aligned_cols=74 Identities=24% Similarity=0.271 Sum_probs=61.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|||. |.||+.+|..|...|+.|++|... +.++.+.+++||+|+.+++.+...+.
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~------ 217 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTK------ 217 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCH------
Confidence 899999999 999999999999999999998321 12678889999999999988665433
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.++++|+++||++..
T Consensus 218 ---~~ik~GavVIDvgin 232 (284)
T PRK14179 218 ---EFVKEGAVVIDVGMN 232 (284)
T ss_pred ---HHccCCcEEEEecce
Confidence 348999999999743
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-06 Score=78.59 Aligned_cols=91 Identities=20% Similarity=0.290 Sum_probs=71.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-C-CeEEEEeCCccchhhHHh----CCC--ccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-G-CDVTVWNRTKSKCDPLIS----LGA--KYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g-~~V~~~d~~~~~~~~~~~----~g~--~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
.++++|||+|..++..++.+... . -+|.+|+|++++.+.+.+ .++ ..+++.+++++++|||+.+++.+ .
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---E 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---C
Confidence 58999999999999999988753 3 389999999998776654 233 34678999999999999998754 3
Q ss_pred HHhcccccccccCCCCCEEEEecCCCh
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~ 169 (290)
.++ + .++++||++++.+++-.+
T Consensus 205 P~~--~---~~~l~~G~hi~~iGs~~p 226 (315)
T PRK06823 205 PLL--Q---AEDIQPGTHITAVGADSP 226 (315)
T ss_pred cee--C---HHHcCCCcEEEecCCCCc
Confidence 555 2 357899999988876555
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.6e-07 Score=70.72 Aligned_cols=101 Identities=18% Similarity=0.277 Sum_probs=72.1
Q ss_pred EEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC--------------CCHHHHhhcCCeEEEEeCChh
Q 022909 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--------------PSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--------------~~~~~~~~~aDivv~~~p~~~ 139 (290)
|+|+|.|.||..+|..|+..|++|.+++|++ +.+.+.+.|+... .+..+..+..|+|++++. ..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK-a~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK-AY 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS-GG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec-cc
Confidence 7899999999999999999999999999988 6666666544321 112245678999999985 46
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHH
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 180 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~ 180 (290)
++...+ +.+.+.+.+++.++..-++ ....+.+.+.+.
T Consensus 79 ~~~~~l---~~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~ 115 (151)
T PF02558_consen 79 QLEQAL---QSLKPYLDPNTTIVSLQNG-MGNEEVLAEYFP 115 (151)
T ss_dssp GHHHHH---HHHCTGEETTEEEEEESSS-SSHHHHHHCHST
T ss_pred chHHHH---HHHhhccCCCcEEEEEeCC-CCcHHHHHHHcC
Confidence 677777 4466777788777766555 344455555553
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.7e-06 Score=73.28 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=69.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh---CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS---LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~---~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
+||||||+|+||+.+++.+... +.++. ++++... .+...+ .++..+++++++-.+.|+|+.|.|.... ....
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~~- 78 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-KEHV- 78 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-HHHH-
Confidence 6899999999999999999875 45554 4444322 111111 2566677888874468999999976543 3333
Q ss_pred ccccccccCCCCCEEEEecCCC---hhHHHHHHHHHHHcCCc
Q 022909 147 GKHGAASGMGPGKGYVDVSTVD---GDTSKLINGHIKATGAS 185 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~---~~~~~~l~~~l~~~~~~ 185 (290)
...++.|..++-.+.+. ....+.|.+..++.+..
T Consensus 79 -----~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 79 -----VPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred -----HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 34466777776555542 33345677777777765
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-06 Score=77.83 Aligned_cols=109 Identities=7% Similarity=0.096 Sum_probs=77.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CC-eEEEEeCCccchhhHHhC-----C--CccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GC-DVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~-~V~~~d~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.++++|||+|..|...++.+... +. +|.+|+|++++.+.+.+. + +..+++.++++++||+|+.++|.+.
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~-- 194 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT-- 194 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC--
Confidence 58999999999999999988763 43 799999999987776541 3 4456899999999999999987643
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHH-HHcCCcEEe
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI-KATGASFLE 188 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l-~~~~~~~~~ 188 (290)
.++ . .++++||.++.-+++-.+. ..++...+ .+....++|
T Consensus 195 -P~~--~---~~~l~pg~hV~aiGs~~p~-~~El~~~~l~~a~~v~vD 235 (301)
T PRK06407 195 -PIF--N---RKYLGDEYHVNLAGSNYPN-RREAEHSVLNDADIVVTE 235 (301)
T ss_pred -cEe--c---HHHcCCCceEEecCCCCCC-cccCCHHHHHhCCEEEEC
Confidence 554 1 3578899887766554442 33343333 322234555
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.4e-06 Score=73.57 Aligned_cols=109 Identities=14% Similarity=0.163 Sum_probs=72.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCc-cchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTK-SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~-~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
..||+|||+|+||+.+++.+... ++++. ++++++ ++.. ...++....+.++++.+.|+|++|+|........
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~--- 77 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQ--- 77 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHH---
Confidence 47999999999999999999865 67866 578885 3222 2234445557777888999999999875553332
Q ss_pred cccccccCCCCCEEEEecCC---ChhHHHHHHHHHHH-cCCcEEe
Q 022909 148 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKA-TGASFLE 188 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~---~~~~~~~l~~~l~~-~~~~~~~ 188 (290)
.+.++.|.-+|+..-. .+...+.+.++.++ +++.++.
T Consensus 78 ----~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~ 118 (324)
T TIGR01921 78 ----APYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS 118 (324)
T ss_pred ----HHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3446677777766432 12334566666665 3444444
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-06 Score=77.72 Aligned_cols=90 Identities=20% Similarity=0.311 Sum_probs=69.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCC-eEEEEeCCccchhhHHhC-----C--CccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~-~V~~~d~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.++|+|||+|.+|+..++.+.. .+. +|.+|||++++.+.+.+. + +..+++.+++++ +|+|++++|...
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~-- 205 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK-- 205 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC--
Confidence 4789999999999999999874 344 688999999887766541 3 334678899887 999999998743
Q ss_pred HHHhcccccccccCCCCCEEEEecCCCh
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~ 169 (290)
.++ . .+++++|+++..++.-.+
T Consensus 206 -P~~--~---~~~l~~g~hV~~iGs~~p 227 (326)
T PRK06046 206 -PVV--K---AEWIKEGTHINAIGADAP 227 (326)
T ss_pred -cEe--c---HHHcCCCCEEEecCCCCC
Confidence 444 1 356799999888875554
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.3e-06 Score=68.29 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=60.9
Q ss_pred CCeEEEEcccHh-HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~i-G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||.|.| |..+++.|.+.|.+|.+.+|+. .++.+.++++|+||.+++.+. ++ .+
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii--~~ 103 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LV--KG 103 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----ee--cH
Confidence 799999999996 8889999999999999999863 256678999999999998743 34 22
Q ss_pred cccccCCCCCEEEEecCCC
Q 022909 150 GAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~ 168 (290)
+.++++.++||++...
T Consensus 104 ---~~~~~~~viIDla~pr 119 (168)
T cd01080 104 ---DMVKPGAVVIDVGINR 119 (168)
T ss_pred ---HHccCCeEEEEccCCC
Confidence 3467789999997544
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-06 Score=82.86 Aligned_cols=69 Identities=26% Similarity=0.401 Sum_probs=56.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC--CC----ccCCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--GA----KYQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~--g~----~~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
+++|+|||+|.||+.+++.|...|. +|++++|++++.+.+.+. +. ...+++.+.+.++|+||.++|.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCC
Confidence 6899999999999999999999997 799999999888777652 22 123466778899999999986543
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-06 Score=76.91 Aligned_cols=89 Identities=15% Similarity=0.303 Sum_probs=69.0
Q ss_pred CCeEEEEcccHhHHHHHHHHH-HCCC-eEEEEeCCccchhhHHhC-----CC--ccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL-KAGC-DVTVWNRTKSKCDPLISL-----GA--KYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~-~~g~-~V~~~d~~~~~~~~~~~~-----g~--~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.++++|||+|.+|+..++.+. ..+. +|.+|+|++++.+.+.+. ++ ...++++++++++|+|+.++|.+.
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~-- 206 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET-- 206 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC--
Confidence 578999999999999999997 4664 799999999887776541 43 235788999999999999998743
Q ss_pred HHHhcccccccccCCCCCEEEEecCC
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
.++ . .+++++|.++..++.-
T Consensus 207 -p~i--~---~~~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 207 -PIL--H---AEWLEPGQHVTAMGSD 226 (326)
T ss_pred -cEe--c---HHHcCCCcEEEeeCCC
Confidence 344 1 2467899988777543
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.6e-05 Score=64.14 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=85.8
Q ss_pred CCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccC
Q 022909 114 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVS 192 (290)
Q Consensus 114 g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~ 192 (290)
|++.++|-.|+++++|++++-+|....+..++ +++++.+++|+++.|+++.++...-.+.+.++++.+.+.+ ||-.
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa 202 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPGC 202 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCCC
Confidence 67778888899999999999999988778887 6789999999999999999988766666666666565554 4422
Q ss_pred CCCccccCCceEEEec-CCHHHHHHHHHHHHHhCCcEEEeC
Q 022909 193 GSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLG 232 (290)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~ll~~~G~~~~~~~ 232 (290)
.+... +...+..+ .+++.++++.++.+..++.+|.+.
T Consensus 203 --VPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 203 --VPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred --CCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 22222 33333322 367889999999999999988764
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.7e-05 Score=64.00 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=84.8
Q ss_pred CCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccC
Q 022909 114 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVS 192 (290)
Q Consensus 114 g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~ 192 (290)
|++.++|-.|+++++|++++-+|....+..++ +++.+.+++|+++.|+++.++...-...+.++++.+.+.+ ||-.
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 67777888889999999999999988788887 6789999999999999999988766666666666555544 4422
Q ss_pred CCCccccCCceEEEec-CCHHHHHHHHHHHHHhCCcEEEeCC
Q 022909 193 GSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLGD 233 (290)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~ll~~~G~~~~~~~~ 233 (290)
-+.. .+...+-.+ .+++.++++.++.+..|+.+|.+..
T Consensus 205 VPgt---~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA 243 (342)
T PRK00961 205 VPEM---KGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPA 243 (342)
T ss_pred CCCC---CCceecccccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 1111 133222111 3678899999999999999887643
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.1e-06 Score=73.69 Aligned_cols=111 Identities=20% Similarity=0.189 Sum_probs=78.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC-----C-C--ccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-----G-A--KYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~-----g-~--~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
+++|.|||+|..|++++..|...|. +|+++||+.++.+.+.+. . . ...+++.+.++++|+||.++|....-
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~ 206 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAK 206 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCC
Confidence 6899999999999999999999997 799999999887776541 1 1 11234455678899999998854211
Q ss_pred H-H-HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 142 M-D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 142 ~-~-~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
. . -+ + .+.++++.+++|+.-.+..+ .+.+..++.|...++
T Consensus 207 ~~~~~~--~---~~~l~~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 207 HPGLPL--P---AELLRPGLWVADIVYFPLET--ELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCC--C---HHHcCCCcEEEEeeeCCCCC--HHHHHHHHCCCeEec
Confidence 0 1 11 1 23477888899986655432 566667777766654
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=72.64 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=78.5
Q ss_pred CCeEEEEcccHhHH-HHHHHHHHCCC---eEEEEeCCccchhhHHh-CCC-ccCCCHHHHhhc--CCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGT-PMAQNLLKAGC---DVTVWNRTKSKCDPLIS-LGA-KYQPSPDEVAAS--CDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~-~la~~l~~~g~---~V~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~~--aDivv~~~p~~~~~~ 142 (290)
.+||||||+|.++. ..+..+...+. -|.++|+++++.+.+.+ .++ ..++++++++++ .|+|++++|...+..
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e 82 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE 82 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence 58999999997664 58888887762 46688999998877666 666 377899999986 599999999866655
Q ss_pred HHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcE
Q 022909 143 DVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~ 186 (290)
..+ ..++.|+.++--= .....+.+++.+..++.+..+
T Consensus 83 ~~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 83 LAL-------AALEAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred HHH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 443 4455666554221 344566678888888776544
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2e-06 Score=76.84 Aligned_cols=93 Identities=17% Similarity=0.275 Sum_probs=61.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCC-eEEEEeCCccchhhHHh---C-C--CccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLIS---L-G--AKYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~-~V~~~d~~~~~~~~~~~---~-g--~~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
.++++|||+|..|...++.+.. ++. +|.+|+|++++.+.+.+ . + +..+++.++++++||+|+.++|.+...
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~- 206 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA- 206 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence 4789999999999999999875 554 79999999988777655 2 3 345789999999999999998765422
Q ss_pred HHhcccccccccCCCCCEEEEecCCCh
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~ 169 (290)
.++ + .+++++|++|+.++...+
T Consensus 207 P~~--~---~~~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 207 PVF--D---AEWLKPGTHINAIGSYTP 228 (313)
T ss_dssp ESB------GGGS-TT-EEEE-S-SST
T ss_pred ccc--c---HHHcCCCcEEEEecCCCC
Confidence 455 2 457899999988876555
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.8e-06 Score=75.59 Aligned_cols=87 Identities=22% Similarity=0.326 Sum_probs=66.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CC-CeEEEEeCCccchhhHHh-----CCCc--cCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS-----LGAK--YQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g-~~V~~~d~~~~~~~~~~~-----~g~~--~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.++|+|||+|.+|+.++..+.. .+ .+|.+|+|++++.+.+.+ .++. ..+++++++.++|+|+.++|...
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~-- 209 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE-- 209 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC--
Confidence 4789999999999999998875 45 479999999988877755 1333 35788999999999999988643
Q ss_pred HHHhcccccccccCCCCCEEEEec
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
.++ . .+++++++.+..++
T Consensus 210 -p~i--~---~~~l~~g~~v~~vg 227 (330)
T PRK08291 210 -PIL--K---AEWLHPGLHVTAMG 227 (330)
T ss_pred -cEe--c---HHHcCCCceEEeeC
Confidence 344 1 23467888776554
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3e-06 Score=74.73 Aligned_cols=93 Identities=18% Similarity=0.180 Sum_probs=76.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+|++.|.|+|..|+.+|.+++..|.+|+++..+|-++-++.-.|..+. ..+++...+||+|.++-. ++++ ..+
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGn----kdVi--~~e 281 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGN----KDVI--RKE 281 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCC----cCcc--CHH
Confidence 899999999999999999999999999999998866555444676655 789999999999988644 4555 455
Q ss_pred ccccCCCCCEEEEecCCChh
Q 022909 151 AASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~ 170 (290)
-+..||+++++.|.+.-...
T Consensus 282 h~~~MkDgaIl~N~GHFd~E 301 (420)
T COG0499 282 HFEKMKDGAILANAGHFDVE 301 (420)
T ss_pred HHHhccCCeEEeccccccee
Confidence 68889999999999765544
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.1e-06 Score=77.37 Aligned_cols=103 Identities=19% Similarity=0.310 Sum_probs=74.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-CCccCCCHHHH--hhcCCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEV--AASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~--~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
+++++|+|+|.+|++++..|...|++|.+++|++++.+.+.+. +.... +.+++ +.++|+||.|+|........
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g~~~~~~--- 407 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPSVTIPKA--- 407 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCCCcchhH---
Confidence 6899999999999999999999999999999998776665542 21111 22222 56899999999976532211
Q ss_pred cccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+. .+++|+...+..+. +.+..++.|+..++
T Consensus 408 -------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 408 -------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred -------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 11 37889987766544 77777887776654
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-05 Score=70.91 Aligned_cols=110 Identities=11% Similarity=0.147 Sum_probs=79.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--CCeE-EEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCCh--hHH-HH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--GCDV-TVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADP--ESA-MD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~--~~~-~~ 143 (290)
..||||||+ .+|+..++.+... +.++ .++|+++++.+++++ .|+..+++.++++++.|++++++|.+ ... ..
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e 81 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSA 81 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHH
Confidence 588999999 6899999999875 4665 478999988877766 67777889999999999999999752 122 22
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
+. ...++.|..++--=-....+.+++.+..+++++.+.
T Consensus 82 ~a------~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 82 LA------RALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HH------HHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 22 345666766554333335666778888888776654
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-06 Score=68.90 Aligned_cols=93 Identities=25% Similarity=0.280 Sum_probs=67.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc---c-----------------------CCCHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK---Y-----------------------QPSPDEV 124 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~---~-----------------------~~~~~~~ 124 (290)
+.+|.|+|.|+.|+.-++.+...|++|..+|.++++.+.....+.. . ...+.+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 99 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEF 99 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHH
Confidence 6899999999999999999999999999999998776665553221 1 1135667
Q ss_pred hhcCCeEEEEeC-ChhHHHHHhcccccccccCCCCCEEEEec
Q 022909 125 AASCDVTFAMLA-DPESAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 125 ~~~aDivv~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
++.+|+|+.++- .......++ .++..+.|+++.+|+|+|
T Consensus 100 i~~~d~vI~~~~~~~~~~P~lv--t~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 100 IAPADIVIGNGLYWGKRAPRLV--TEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHH-SEEEEHHHBTTSS---SB--EHHHHHTSSTTEEEEETT
T ss_pred HhhCcEEeeecccCCCCCCEEE--EhHHhhccCCCceEEEEE
Confidence 788999997543 334455666 566788899999999996
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-06 Score=80.32 Aligned_cols=69 Identities=26% Similarity=0.420 Sum_probs=55.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHh-CCCc--cCCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-LGAK--YQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~-~g~~--~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
+++|+|||+|.||..+++.|...| .+|++++|++++...+++ .+.. ...++.+.+.++|+|+.+++.+.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 689999999999999999999999 689999999887665554 3322 22456678889999999987644
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.9e-06 Score=71.60 Aligned_cols=74 Identities=26% Similarity=0.363 Sum_probs=61.5
Q ss_pred CCeEEEEcccHh-HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~i-G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||.|.+ |+.++..|...|..|+++... +.++.+.++++|+||.+++.+ +++ +
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~----~~i--~- 216 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKR----NVL--T- 216 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCc----Ccc--C-
Confidence 899999999888 999999999999999987643 236778899999999999863 344 2
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.+++++|+++||++..
T Consensus 217 --~~~ik~gavVIDVGin 232 (285)
T PRK14189 217 --ADMVKPGATVIDVGMN 232 (285)
T ss_pred --HHHcCCCCEEEEcccc
Confidence 3678999999999743
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=71.30 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=49.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHH----h--------CCCccCCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S--------LGAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~----~--------~g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
+||+|||+|.||..+|..++..|+ +|.++|++++...... + ..+....+.++ +++||+||++.+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~ 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC
Confidence 689999999999999999999876 8999999765433111 0 01334467776 7899999999984
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.6e-05 Score=70.71 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=71.5
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHC-CCeEE-EEeCCccchhhHHhC-CCccCCCHHHHhh--cCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~ 144 (290)
..||||||+|.||+. .+..+... ++++. ++|+++++.. ++. +...+++++++++ +.|+|++++|...+.+..
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~ 81 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLA 81 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 479999999999984 56766554 67765 7888875533 222 4556789999996 479999999986654443
Q ss_pred hcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcE
Q 022909 145 ACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~ 186 (290)
+ ..++.|+.++--= .....+.+++.++.++.++.+
T Consensus 82 ~-------~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 82 K-------AALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred H-------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 3 3455666554221 234455567777777766543
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=71.27 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=48.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhh--H--Hh----CC----CccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDP--L--IS----LG----AKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~--~--~~----~g----~~~~~~~~~~~~~aDivv~~~ 135 (290)
.+||+|||+|.+|..++..+...| .++.++|+++++.+. + .. .+ +....+.+ .+++||+|+++.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 689999999999999999999888 689999998765332 1 11 11 12235666 679999999998
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.1e-05 Score=67.52 Aligned_cols=114 Identities=16% Similarity=0.210 Sum_probs=72.9
Q ss_pred CeEEEEc-ccHhHHHHHHHHHH-CCCeEE-EEeCC-ccch-hhHHh------CCCccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLK-AGCDVT-VWNRT-KSKC-DPLIS------LGAKYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~-~g~~V~-~~d~~-~~~~-~~~~~------~g~~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
+||+|+| +|+||+.+++.+.. .++++. ++||. ++.. ....+ .++..+++++++...+|+|+.++|. ..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p-~~ 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP-EG 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh-HH
Confidence 6899999 69999999999986 477755 67753 2221 11111 3456667888885578999999855 44
Q ss_pred HHHHhcccccccccCCCCCEEEE-ecCCChhHHHHHHHHHHHcCCcEEeCccC
Q 022909 141 AMDVACGKHGAASGMGPGKGYVD-VSTVDGDTSKLINGHIKATGASFLEAPVS 192 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin-~s~~~~~~~~~l~~~l~~~~~~~~~~p~~ 192 (290)
....+ ...++.|..+|- ++.......+++.++.++.++.++-.|++
T Consensus 81 ~~~~~------~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 81 VLNHL------KFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred HHHHH------HHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 44443 344556655544 43334445566777766666776666654
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.9e-06 Score=74.46 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=69.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCC-eEEEEeCCccchhhHHh----CC--CccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLIS----LG--AKYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~-~V~~~d~~~~~~~~~~~----~g--~~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
..+++|||+|..+...++.+.. +.. +|.+|+|++++.+.+.+ .+ +..+++.++++++||+|+.++|.+. ..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CC
Confidence 4789999999999999887764 343 89999999988776553 23 3456899999999999999986432 12
Q ss_pred HHhcccccccccCCCCCEEEEecCCCh
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~ 169 (290)
.++ . .+++++|+++.-+++-.+
T Consensus 208 Pvl--~---~~~lkpG~hV~aIGs~~p 229 (346)
T PRK07589 208 TIL--T---DDMVEPGMHINAVGGDCP 229 (346)
T ss_pred cee--c---HHHcCCCcEEEecCCCCC
Confidence 444 1 357899998877765444
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.5e-06 Score=76.23 Aligned_cols=91 Identities=18% Similarity=0.252 Sum_probs=69.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CC-C-eEEEEeCCccchhhHHh----C--C---CccCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AG-C-DVTVWNRTKSKCDPLIS----L--G---AKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g-~-~V~~~d~~~~~~~~~~~----~--g---~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
.++++|||+|..++...+.+.. +. . +|.+|+|++++.+.+.+ . + +..+++.++++++||||+.+++..
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4789999999999999999876 42 3 89999999988776543 1 2 445689999999999999998753
Q ss_pred h---HHHHHhcccccccccCCCCCEEEEecC
Q 022909 139 E---SAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ~---~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
. ....++ . .+++++|++|+..+.
T Consensus 235 ~~~~s~~Pv~--~---~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 235 TGDPSTYPYV--K---REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCcCcEe--c---HHHcCCCcEEecCCc
Confidence 3 233555 1 357889998876543
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.5e-06 Score=79.32 Aligned_cols=69 Identities=26% Similarity=0.410 Sum_probs=55.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh-CCCcc--CCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-LGAKY--QPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~-~g~~~--~~~~~~~~~~aDivv~~~p~~~ 139 (290)
+++|+|||+|.||+.+++.|...|. +|++++|++++...+++ .|... ..++.+.+.++|+||.++|.+.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 7899999999999999999999997 79999999887765554 34222 2355667889999999987654
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.4e-06 Score=68.82 Aligned_cols=95 Identities=21% Similarity=0.150 Sum_probs=65.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----CCc--c--CCC---HHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAK--Y--QPS---PDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~--~--~~~---~~~~~~~aDivv~~~p~ 137 (290)
++++.|+|. |.+|+.+++.|...|++|.+++|+.++.+.+.+. +.. . ..+ +.+.++++|+|+.+.|.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCC
Confidence 689999995 9999999999999999999999998776655431 111 1 122 34677889999999886
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEecCCChhH
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~ 171 (290)
...+... .....+++.+++|++.....+
T Consensus 108 g~~~~~~------~~~~~~~~~vv~D~~~~~~~~ 135 (194)
T cd01078 108 GVELLEK------LAWAPKPLAVAADVNAVPPVG 135 (194)
T ss_pred Cceechh------hhcccCceeEEEEccCCCCCC
Confidence 5531111 112344577889887665543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.7e-05 Score=70.68 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=48.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHH----hC----C----CccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----SL----G----AKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~----~~----g----~~~~~~~~~~~~~aDivv~~~p 136 (290)
++||+|||+|.||..+|..+...|. +|.++|+++++.+... +. + +....+.+ .+++||+||++..
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~~ 79 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITAG 79 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECCC
Confidence 3799999999999999999998765 9999999876543211 10 1 11234554 5799999999863
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-05 Score=71.81 Aligned_cols=66 Identities=23% Similarity=0.236 Sum_probs=49.1
Q ss_pred CCCCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchh--hH---Hh---CC----CccCCCHHHHhhcCCeEEEEe
Q 022909 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCD--PL---IS---LG----AKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 69 ~~~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~--~~---~~---~g----~~~~~~~~~~~~~aDivv~~~ 135 (290)
...+||+|||+|.||..+|..++..|. +|.++|++++... .+ .. .+ +....+.+ .+++||+||++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~-~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYE-DIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHH-HhCCCCEEEECC
Confidence 336899999999999999999998885 8999999987532 11 00 11 23335664 679999999966
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.2e-05 Score=75.63 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=69.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc--CC---------------C----------HHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY--QP---------------S----------PDE 123 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~--~~---------------~----------~~~ 123 (290)
+.++.|+|+|.+|...++.+...|.+|+++|+++++.+.++..|... .+ + +.+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA 243 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999998877766655443 00 0 334
Q ss_pred HhhcCCeEEEEeCChh-HHHHHhcccccccccCCCCCEEEEec
Q 022909 124 VAASCDVTFAMLADPE-SAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 124 ~~~~aDivv~~~p~~~-~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
.++++|+|+.++--+. ....++ .++..+.||+|.++||++
T Consensus 244 ~~~~~DIVI~TalipG~~aP~Li--t~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 244 QAKEVDIIITTALIPGKPAPKLI--TEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HhCCCCEEEECcccCCCCCCeee--hHHHHhhCCCCCEEEEee
Confidence 5678999998871111 011233 344578899999999997
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.2e-05 Score=70.19 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=61.0
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||.|. +|+.++..|...|..|++++++. .++.+.++++|+||.+++.+. ++ ..
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~----~i--~~ 217 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPG----LV--TK 217 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCc----cc--CH
Confidence 89999999988 99999999999999999998642 257788999999999998743 33 22
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
+++++|+++||++.
T Consensus 218 ---~~vk~gavVIDvGi 231 (286)
T PRK14175 218 ---DVVKEGAVIIDVGN 231 (286)
T ss_pred ---HHcCCCcEEEEcCC
Confidence 35789999999975
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.3e-06 Score=70.51 Aligned_cols=109 Identities=11% Similarity=0.110 Sum_probs=70.5
Q ss_pred CCeEEEEcccHhHHHHHHHH--HHCCCeEE-EEeCCccchhhHHh-CCCccCCCHHHHhhc--CCeEEEEeCChhH---H
Q 022909 71 PGRIGFLGMGIMGTPMAQNL--LKAGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAAS--CDVTFAMLADPES---A 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l--~~~g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~--aDivv~~~p~~~~---~ 141 (290)
..+|+|||+|.+|+.+++.+ ...|+++. ++|+++++...... ..+...+++++++++ .|+|++++|.... .
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~ 163 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVA 163 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHH
Confidence 57899999999999999864 34678766 67887654432111 112233567777765 9999999997654 2
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHH
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA 181 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~ 181 (290)
..+. .......+....+.+|+-++..++..++...|..
T Consensus 164 ~~l~--~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 164 DRLV--EAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred HHHH--HcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 2333 2333444555666677777777666666666653
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.4e-05 Score=61.21 Aligned_cols=91 Identities=19% Similarity=0.315 Sum_probs=57.2
Q ss_pred eEEEEc-ccHhHHHHHHHHHHC-CCeEEEE-eCCccchhhHHhCC--Cc-c-CC--CHHHH-hhcCCeEEEEeCChhHHH
Q 022909 73 RIGFLG-MGIMGTPMAQNLLKA-GCDVTVW-NRTKSKCDPLISLG--AK-Y-QP--SPDEV-AASCDVTFAMLADPESAM 142 (290)
Q Consensus 73 ~IgiiG-~G~iG~~la~~l~~~-g~~V~~~-d~~~~~~~~~~~~g--~~-~-~~--~~~~~-~~~aDivv~~~p~~~~~~ 142 (290)
||+|+| .|.+|..++..+... ++++... +++.++.+.++..+ +. . .. +.+++ ..++|+|++++|.... .
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~-~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS-K 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHH-H
Confidence 589999 599999999999884 7777655 55443333333211 10 0 01 11122 2489999999987644 3
Q ss_pred HHhcccccccccCCCCCEEEEecCC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
..+ ......+++|+++||+|+.
T Consensus 80 ~~~---~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 80 EIA---PLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHH---HHHHhhhcCCCEEEECCcc
Confidence 433 1124457899999999864
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.7e-05 Score=68.49 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=64.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccch--hhHHhCCCcc-CCCHHHHhh-----cCCeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKC--DPLISLGAKY-QPSPDEVAA-----SCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~--~~~~~~g~~~-~~~~~~~~~-----~aDivv~~~p~~~~ 140 (290)
+.+|||||+|+||+.+...+... +.++. ++|+++++. ...++.|+.. .++.+++++ +.|+|+.++|...+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 68999999999999988887754 55654 778887542 3344467765 478999985 47889999876544
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCC
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~ 168 (290)
.+.. ....+.|..+|+.+...
T Consensus 84 ~e~a-------~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 84 VRHA-------AKLREAGIRAIDLTPAA 104 (302)
T ss_pred HHHH-------HHHHHcCCeEEECCccc
Confidence 3332 23456788888887443
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.4e-06 Score=62.36 Aligned_cols=89 Identities=20% Similarity=0.307 Sum_probs=56.0
Q ss_pred eEEEEc-ccHhHHHHHHHHHHCC-Ce-EEEEeCCccchhhHHhC--------CCccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 73 RIGFLG-MGIMGTPMAQNLLKAG-CD-VTVWNRTKSKCDPLISL--------GAKYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 73 ~IgiiG-~G~iG~~la~~l~~~g-~~-V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
||+||| +|.+|+.+.+.|..+- ++ +.+++++.+....+... .....+...+.+.++|+|+.|+|... .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-S 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH-H
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH-H
Confidence 699999 9999999999999853 35 44666665333333331 11122222344589999999997633 3
Q ss_pred HHHhcccccccccCCCCCEEEEecCCC
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~ 168 (290)
.... -..+++|..+||.|...
T Consensus 80 ~~~~------~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 80 KELA------PKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp HHHH------HHHHHTTSEEEESSSTT
T ss_pred HHHH------HHHhhCCcEEEeCCHHH
Confidence 4433 12257888999997543
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.4e-06 Score=70.10 Aligned_cols=93 Identities=16% Similarity=0.073 Sum_probs=73.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
++.+.|.|+|.+|+.-|+.|+.+|.+|++...+|-.+-+++-.|.+.+ .++|+.++.||++.++-- +.++ ..+
T Consensus 214 GKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTGc----~dii--~~~ 286 (434)
T KOG1370|consen 214 GKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTGC----KDII--TGE 286 (434)
T ss_pred ccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccCC----cchh--hHH
Confidence 778888899999999999999999999999888754443333667655 899999999999877643 3444 345
Q ss_pred ccccCCCCCEEEEecCCChh
Q 022909 151 AASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~ 170 (290)
-++.||.++++.|++.....
T Consensus 287 H~~~mk~d~IvCN~Ghfd~E 306 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHFDTE 306 (434)
T ss_pred HHHhCcCCcEEeccccccce
Confidence 68899999999999765543
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.3e-05 Score=56.08 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=50.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++++|+|+|.+|+.++..+... +.+|.+||| |+++.+++.+....+-
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~~----- 71 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLEE----- 71 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchHH-----
Confidence 68999999999999999999998 578999988 9999998765443321
Q ss_pred cccccCCCCCEEEEec
Q 022909 150 GAASGMGPGKGYVDVS 165 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s 165 (290)
....++++.++++++
T Consensus 72 -~~~~~~~~~~v~~~a 86 (86)
T cd05191 72 -ATAKINEGAVVIDLA 86 (86)
T ss_pred -HHHhcCCCCEEEecC
Confidence 235567888988763
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.05 E-value=3e-05 Score=78.59 Aligned_cols=110 Identities=18% Similarity=0.219 Sum_probs=77.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCe-------------EEEEeCCccchhhHHh-C-CC---cc-CCCHHHHh---hc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCD-------------VTVWNRTKSKCDPLIS-L-GA---KY-QPSPDEVA---AS 127 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~-------------V~~~d~~~~~~~~~~~-~-g~---~~-~~~~~~~~---~~ 127 (290)
+++|+|||+|.||+.+++.|... +.+ |.+.|+++++.+.+.+ . ++ .. +.+.+++. ++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 57999999999999999999864 333 8899999887776655 2 32 22 44655555 57
Q ss_pred CCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 128 aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+|+|++++|..-+ ..+. ..+++.|..+++.+ -......++.+..++.++.++.
T Consensus 649 ~DaVIsalP~~~H-~~VA------kaAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 649 VDVVISLLPASCH-AVVA------KACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred CCEEEECCCchhh-HHHH------HHHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 9999999997543 2222 34456777777775 4455566777777777766544
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.5e-05 Score=72.73 Aligned_cols=68 Identities=29% Similarity=0.397 Sum_probs=57.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHh-CCC--ccCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-LGA--KYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~-~g~--~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
++++.|||+|.||.-+|+.|...| .+|++.+|+.+++..+++ .+. ...+++.+.+.++|+||.++..+
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence 789999999999999999999999 589999999999888776 443 33456777889999999996543
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.4e-05 Score=68.70 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=49.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC--CeEEEEeCCccchhhHHhC--------CC--c-cCCCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISL--------GA--K-YQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~~~~~~~~~--------g~--~-~~~~~~~~~~~aDivv~~~p~~ 138 (290)
+||+|||+|.+|+.+|..|...| .+|.++|+++++.+..... +. . ...+.+ .+++||+||++...+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~-~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS-DCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH-HhCCCCEEEEccCCC
Confidence 47999999999999999999988 5899999998775543321 11 1 223444 578999999998753
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.3e-05 Score=72.90 Aligned_cols=111 Identities=19% Similarity=0.312 Sum_probs=72.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--------C--CeE-EEEeCCccchhhHHhCCCccCCCHHHHhhc--CCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--------G--CDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--------g--~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivv~~~p~ 137 (290)
..+|||+|+|.||+.+++.+... | .+| .++++++++.......+...+++.++++.+ .|+|+.+++.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGG 82 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCC
Confidence 47899999999999999887543 2 343 467888765433222334566789999964 6999998865
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEecCC-ChhHHHHHHHHHHHcCCcEE
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s~~-~~~~~~~l~~~l~~~~~~~~ 187 (290)
.......+ ...++.|..+|-..-. .....++|.+..+++++.+.
T Consensus 83 ~~~~~~~~------~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~ 127 (426)
T PRK06349 83 IEPARELI------LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY 127 (426)
T ss_pred chHHHHHH------HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 43333333 4567788887743211 12234677777777777543
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=75.78 Aligned_cols=94 Identities=20% Similarity=0.316 Sum_probs=69.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC--C-----------------CH--------HH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--P-----------------SP--------DE 123 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~-----------------~~--------~~ 123 (290)
+.+|.|+|+|.+|...++.++..|.+|+++|+++++.+..++.|.... + +. .+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~ 244 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE 244 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHh
Confidence 689999999999999999999999999999999998888777776521 1 10 11
Q ss_pred HhhcCCeEEEEeCChhH-HHHHhcccccccccCCCCCEEEEecC
Q 022909 124 VAASCDVTFAMLADPES-AMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 124 ~~~~aDivv~~~p~~~~-~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++++|+||.+...+.. ...++ .++.++.|++|.++++++-
T Consensus 245 ~~~gaDVVIetag~pg~~aP~li--t~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 245 QAKEVDIIITTALIPGKPAPKLI--TAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccCCCCEEEECCCCCcccCcchH--HHHHHHhcCCCCEEEEEcc
Confidence 12469999999864321 11222 1344688999999999974
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.1e-05 Score=72.98 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=94.4
Q ss_pred EEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccc--------cCC
Q 022909 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPA--------EDG 201 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~--------~~~ 201 (290)
||+|+|. ..+..++ +++.+.+++++++.|+++.+....+++.+.+......|++ ||++|.+... ..+
T Consensus 1 vila~Pv-~~~~~~~---~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAPV-AQTGPLL---ARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVG 76 (673)
T ss_pred CEEEcCH-HHHHHHH---HHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCC
Confidence 5788876 6677777 5567889999999999999987766666665543356888 9999988654 366
Q ss_pred ceEEEecC---CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHH
Q 022909 202 QLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYS 257 (290)
Q Consensus 202 ~~~~~~~~---~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea 257 (290)
...+++.. ++++++.++++++.+|.+++.+.+..+...+.+++.+-+.+..++.+.
T Consensus 77 ~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~ 135 (673)
T PRK11861 77 RNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQ 135 (673)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66777643 467899999999999999999999999999988888765555444433
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.8e-05 Score=61.43 Aligned_cols=76 Identities=25% Similarity=0.400 Sum_probs=54.4
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||-+ .+|+.++..|...|..|++++.+. .++++.++++|+||.+++.+.. + .
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~----i--~- 94 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNL----I--K- 94 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-----B----
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccccc----c--c-
Confidence 8999999976 599999999999999999887653 3677889999999999977443 3 1
Q ss_pred cccccCCCCCEEEEecCCCh
Q 022909 150 GAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~ 169 (290)
.+++|+|+++||++....
T Consensus 95 --~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 95 --ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp --GGGS-TTEEEEE--CEEE
T ss_pred --cccccCCcEEEecCCccc
Confidence 457899999999965433
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.4e-05 Score=58.83 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=62.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|+| ...+|+.++..|.+.|..|..++++. .++++.++++|+|+.+++.+. ++ +
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~----~i--~- 86 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPE----KV--P- 86 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCC----cc--C-
Confidence 89999999 58899999999999999999988643 267788999999999998753 34 2
Q ss_pred cccccCCCCCEEEEecCCC
Q 022909 150 GAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~ 168 (290)
.+++|+|++++|++...
T Consensus 87 --~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 --TEWIKPGATVINCSPTK 103 (140)
T ss_pred --HHHcCCCCEEEEcCCCc
Confidence 46789999999987544
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.1e-05 Score=64.50 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=73.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC---eEEEEeCC----ccch-------hhHHh-CCCccC-CCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRT----KSKC-------DPLIS-LGAKYQ-PSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~---~V~~~d~~----~~~~-------~~~~~-~g~~~~-~~~~~~~~~aDivv~~ 134 (290)
+++|.|+|+|.+|+.++..|...|. +|.++||+ .++. ..+.+ .+.... .++.+.++++|+||-+
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIga 104 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGV 104 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeC
Confidence 7899999999999999999999997 49999998 4432 22222 211111 3677788899999999
Q ss_pred eCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc-EEe
Q 022909 135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS-FLE 188 (290)
Q Consensus 135 ~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~-~~~ 188 (290)
+|.. ++ .++.++.|.++.++.+.++ |.. +.+.+...+.+.. +.+
T Consensus 105 T~~G-----~~--~~~~l~~m~~~~ivf~lsn--P~~-e~~~~~A~~~ga~i~a~ 149 (226)
T cd05311 105 SRPG-----VV--KKEMIKKMAKDPIVFALAN--PVP-EIWPEEAKEAGADIVAT 149 (226)
T ss_pred CCCC-----CC--CHHHHHhhCCCCEEEEeCC--CCC-cCCHHHHHHcCCcEEEe
Confidence 8732 22 2334566778888888873 322 3455555666765 444
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.1e-05 Score=72.37 Aligned_cols=107 Identities=27% Similarity=0.332 Sum_probs=68.2
Q ss_pred EEEEcccHhHHHHHHHHHHCC-C-eEEEEeCCccchhhHHhC----CC-------ccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 74 IGFLGMGIMGTPMAQNLLKAG-C-DVTVWNRTKSKCDPLISL----GA-------KYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~g-~-~V~~~d~~~~~~~~~~~~----g~-------~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
|+|+|+|.+|+.+++.|...+ + +|++.||+.++.+.+.+. .+ .-..++.++++++|+||.|+|.. .
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence 789999999999999999876 4 899999999887776541 11 11123667889999999999764 3
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
...++ ...++.|...||++- ......++.+..++.++.++.
T Consensus 80 ~~~v~------~~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~ 120 (386)
T PF03435_consen 80 GEPVA------RACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALP 120 (386)
T ss_dssp HHHHH------HHHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-
T ss_pred hHHHH------HHHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEe
Confidence 33333 234556777787422 233445556666666665544
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00011 Score=66.14 Aligned_cols=169 Identities=15% Similarity=0.207 Sum_probs=94.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHH--------CC--CeEE-EEeCCccc-------hhhHHh----CC-Cc-c-------CC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK--------AG--CDVT-VWNRTKSK-------CDPLIS----LG-AK-Y-------QP 119 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~--------~g--~~V~-~~d~~~~~-------~~~~~~----~g-~~-~-------~~ 119 (290)
..+|+|+|+|++|+.+++.+.. .| .+|. +.|++... .+++.+ .+ +. + ..
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4789999999999999999876 46 3443 44544211 111111 11 00 0 11
Q ss_pred CHHHHh--hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCCh-hHHHHHHHHHHHcCCcEEeC-ccCCCC
Q 022909 120 SPDEVA--ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFLEA-PVSGSK 195 (290)
Q Consensus 120 ~~~~~~--~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~-~~~~~l~~~l~~~~~~~~~~-p~~~~~ 195 (290)
+.++++ .++|+||-+.+. ....... ...++.|..+|-.+.+.. ...+++.+..++++..+.-. .+.++.
T Consensus 82 ~~~ell~~~~~DVvVd~t~~-~~a~~~~------~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~Gi 154 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTND-KNAHEWH------LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGT 154 (336)
T ss_pred CHHHHHhcCCCCEEEECCCc-HHHHHHH------HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccC
Confidence 677777 478999988854 4444444 455678888775544322 24456777767777776653 333333
Q ss_pred ccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Q 022909 196 KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFL 267 (290)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~ 267 (290)
| .++.+++.+ .|.++..+..+-++-.--++..+ . . ..+.|++..|++.|..
T Consensus 155 P----------------ii~~l~~~l--~g~~i~~i~GIlnGT~nyIl~~m-~--~g~~f~eal~eAq~~Gya 206 (336)
T PRK08374 155 P----------------IIGLLRENL--LGDTVKRIEAVVNATTTFILTRM-E--QGKTFEEALKEAQTLGIA 206 (336)
T ss_pred C----------------chHHHHhhc--cccceEEEEEEEechHHHHHHHh-h--CCCCHHHHHHHHHHcCCC
Confidence 2 234555555 35556555554333321111111 1 2 5677888777887753
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.7e-05 Score=73.30 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=57.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh-CC-C--ccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-LG-A--KYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~-~g-~--~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
+++|.|||+|.||+.+++.|...|. +|++++|+.++.+.+.+ .+ . ...+++.+.+.++|+||.|++.+..
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCe
Confidence 7899999999999999999999995 79999999888777766 22 2 2234566778999999999976543
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.1e-05 Score=63.62 Aligned_cols=107 Identities=20% Similarity=0.251 Sum_probs=68.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeC----------CccchhhHHh-CC-------CccCCCHHHHh-hcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNR----------TKSKCDPLIS-LG-------AKYQPSPDEVA-ASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~----------~~~~~~~~~~-~g-------~~~~~~~~~~~-~~aDi 130 (290)
+++|+|.|+|++|+.+++.|..+|.+|+ +.|. +.+...+..+ .| .... +.++++ .++|+
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dv 109 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDI 109 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccE
Confidence 7999999999999999999999999988 6565 3333322222 22 1111 223333 36899
Q ss_pred EEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++-|.+.+.-+.+.+ +.++ =.+|+--++... + .+..+.|+++|+.|+.
T Consensus 110 lip~a~~~~i~~~~~-------~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~~~P 157 (227)
T cd01076 110 LIPAALENQITADNA-------DRIK-AKIIVEAANGPT-T-PEADEILHERGVLVVP 157 (227)
T ss_pred EEecCccCccCHHHH-------hhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCEEEC
Confidence 998886655544433 3343 234444444444 4 5667888999988864
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.9e-05 Score=62.56 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=67.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCc----------cchhhHHhC-CCccCC-----CHHHHh-hcCCeEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTK----------SKCDPLISL-GAKYQP-----SPDEVA-ASCDVTF 132 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~----------~~~~~~~~~-g~~~~~-----~~~~~~-~~aDivv 132 (290)
+++|.|.|+|++|+.+|+.|...|.+ |.+.|.+. +..+...+. ++...+ +.++++ .++|+++
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVli 102 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFA 102 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEe
Confidence 79999999999999999999999885 55778776 444333332 222111 123333 3689999
Q ss_pred EEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 133 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.|.+.+.-+.. ....++ =.+++-.++++.. . +-.+.|+++|+.++.
T Consensus 103 paA~~~~i~~~-------~a~~l~-a~~V~e~AN~p~t-~-~a~~~L~~~Gi~v~P 148 (217)
T cd05211 103 PCALGNVIDLE-------NAKKLK-AKVVAEGANNPTT-D-EALRILHERGIVVAP 148 (217)
T ss_pred eccccCccChh-------hHhhcC-ccEEEeCCCCCCC-H-HHHHHHHHCCcEEEC
Confidence 88876533333 233343 2344444444443 3 567788888877754
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.6e-05 Score=60.83 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=48.8
Q ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccCC
Q 022909 235 GNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDGN 288 (290)
Q Consensus 235 g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~~ 288 (290)
|.+..+|++.|++...+ .+++|++.++++.|+|++++.+++....++|+.+.++
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~ 55 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNR 55 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhh
Confidence 67899999999998888 9999999999999999999999999999999877543
|
... |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=97.91 E-value=3e-05 Score=72.13 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=50.0
Q ss_pred CeEEEEcccHhHHHHHH--HH----HHCCCeEEEEeCCccchhhHHh--------C----CCccCCCHHHHhhcCCeEEE
Q 022909 72 GRIGFLGMGIMGTPMAQ--NL----LKAGCDVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVTFA 133 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~--~l----~~~g~~V~~~d~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDivv~ 133 (290)
+||+|||.|.+|.+.+. .+ ...|.+|.+||+++++.+.... . .+..++++.+++++||+|++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 47999999999998655 23 3346799999999877554332 1 23346788899999999999
Q ss_pred EeCC
Q 022909 134 MLAD 137 (290)
Q Consensus 134 ~~p~ 137 (290)
++|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9983
|
linked to 3D####ucture |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.1e-05 Score=66.57 Aligned_cols=74 Identities=24% Similarity=0.335 Sum_probs=59.9
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||.|. +|+.++..|...|..|+++++.. .++.+.++++|+||.+++.+. .+ .
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~----~v--~- 217 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPE----LI--K- 217 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCC----cC--C-
Confidence 89999999998 99999999999999999998732 245667789999999997533 33 1
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.+.++++++++|++..
T Consensus 218 --~~~lk~gavViDvg~n 233 (283)
T PRK14192 218 --KDWIKQGAVVVDAGFH 233 (283)
T ss_pred --HHHcCCCCEEEEEEEe
Confidence 3558999999999643
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.4e-05 Score=67.26 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=45.4
Q ss_pred EEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhh----HHh----C----CCccCCCHHHHhhcCCeEEEEeC
Q 022909 74 IGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDP----LIS----L----GAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~----~~~----~----g~~~~~~~~~~~~~aDivv~~~p 136 (290)
|+|||+|.||..+|..++..|. +|.++|++++..+. +.+ . .+....+.+ .+++||+||++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecC
Confidence 6899999999999999988776 99999998765321 111 0 122234554 5799999999874
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=6e-05 Score=65.72 Aligned_cols=73 Identities=26% Similarity=0.361 Sum_probs=61.1
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||-|. +|+.++..|...|..|+++.+.. .++.+.++++|+||.+++.+.- + .
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~p~~----v--~- 217 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGKPGF----I--P- 217 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCCccc----c--c-
Confidence 89999999988 99999999999999999987542 3678889999999999976542 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++++|+++||++.
T Consensus 218 --~~~vk~gavVIDvGi 232 (285)
T PRK10792 218 --GEWIKPGAIVIDVGI 232 (285)
T ss_pred --HHHcCCCcEEEEccc
Confidence 256899999999973
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.9e-05 Score=62.15 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=48.3
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh--------C--CCccCCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS--------L--GAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~--------~--g~~~~~~~~~~~~~aDivv~~~p 136 (290)
+||+|||+ |++|..++..|...+. ++.++|+++++.+.... . ......+..+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 68999999 9999999999988764 89999999765433221 1 11222355667899999999874
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=97.88 E-value=4e-05 Score=58.14 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=65.0
Q ss_pred cccHhHHHHHHHHHHC----CCeEE-EEeCC--ccchhhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHhccc
Q 022909 78 GMGIMGTPMAQNLLKA----GCDVT-VWNRT--KSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 78 G~G~iG~~la~~l~~~----g~~V~-~~d~~--~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~~~~ 148 (290)
|+|.||+.+++.+... +++|. +++++ ..........+.....++++++. +.|+||-|.+. +.....+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~~~~--- 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVAEYY--- 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHHHHH---
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHHHHH---
Confidence 8999999999999876 45654 67777 11111111233556779999998 89999999655 4444444
Q ss_pred ccccccCCCCCEEEEecCCChh---HHHHHHHHHHHcCCcEE
Q 022909 149 HGAASGMGPGKGYVDVSTVDGD---TSKLINGHIKATGASFL 187 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~---~~~~l~~~l~~~~~~~~ 187 (290)
.+.++.|..+|..+-+... ..++|.+..++.+.++.
T Consensus 77 ---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 77 ---EKALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp ---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred ---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 4567788888877655444 45567777777776653
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00013 Score=66.08 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=69.5
Q ss_pred CeEEEEcccHhHH-HHHHHHHH--CCCeEE-EEeCCccchhhHHhCC-CccCCCHHHHhh--cCCeEEEEeCChhHHHHH
Q 022909 72 GRIGFLGMGIMGT-PMAQNLLK--AGCDVT-VWNRTKSKCDPLISLG-AKYQPSPDEVAA--SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 72 ~~IgiiG~G~iG~-~la~~l~~--~g~~V~-~~d~~~~~~~~~~~~g-~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~ 144 (290)
.||||||+|.++. ..+..+.. .+.+|. ++|+++++.+...+.+ +..+++++++++ +.|+|++++|...+.+..
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~ 81 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA 81 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHH
Confidence 5799999999875 34554533 256665 7899875543333343 567789999996 479999999976654443
Q ss_pred hcccccccccCCCCCEEE-Eec-CCChhHHHHHHHHHHHcCCcE
Q 022909 145 ACGKHGAASGMGPGKGYV-DVS-TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~li-n~s-~~~~~~~~~l~~~l~~~~~~~ 186 (290)
. ..++.|+.++ .-= .....+.+++.+..++.++.+
T Consensus 82 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 118 (344)
T PRK10206 82 K-------RALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTV 118 (344)
T ss_pred H-------HHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence 3 3345555433 211 234456677888877776654
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.2e-05 Score=65.57 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=61.0
Q ss_pred EEEEcc-cHhHHHHHHHHHHCC----CeEEEEeCCccchhhHHh-------C----CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 74 IGFLGM-GIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLIS-------L----GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 74 IgiiG~-G~iG~~la~~l~~~g----~~V~~~d~~~~~~~~~~~-------~----g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
|+|||+ |.+|..++..+...| .+|.++|+++++.+.... . .+...+++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 999999999999888 689999998876543221 1 223345667889999999995421
Q ss_pred h-----------hHHHHHhcccccccccCCCCCEEEEecC
Q 022909 138 P-----------ESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 138 ~-----------~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+ .....++..-.+.+....|++++|+.|.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tN 120 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1 0111122100112334458889999854
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.84 E-value=9e-05 Score=65.22 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=73.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC-C----CccCC---CHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G----AKYQP---SPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~-g----~~~~~---~~~~~~~~aDivv~~~p~~~~~ 141 (290)
++++.|||+|.+|++++..|...|. +|++++|++++.+.+.+. + +.... ++.+.+.++|+||.++|.....
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~ 204 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPA 204 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCC
Confidence 6899999999999999999999997 799999999888777652 1 11121 2335567899999999864321
Q ss_pred HH-Hhcccccc--cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 142 MD-VACGKHGA--ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 142 ~~-~~~~~~~~--~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.. .+...... ....+++.+++|+--.+.. -.+.+..++.|...++
T Consensus 205 ~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~ 252 (282)
T TIGR01809 205 DYVDLFATVPFLLLKRKSSEGIFLDAAYDPWP--TPLVAIVSAAGWRVIS 252 (282)
T ss_pred CHHHhhhhhhhhccccCCCCcEEEEEeeCCCC--CHHHHHHHHCCCEEEC
Confidence 11 11000000 0123456778887543322 2555666666655543
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.3e-05 Score=57.04 Aligned_cols=103 Identities=20% Similarity=0.313 Sum_probs=69.1
Q ss_pred CeEEEEc----ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 72 GRIGFLG----MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 72 ~~IgiiG----~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
++|+||| -++.|..+.+.|.+.|++|+..++..+.. .|...+.+++|.-...|++++++|. +.+..++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v-- 72 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIV-- 72 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHH--
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCH-HHHHHHH--
Confidence 5799999 68999999999999999999998876443 3566677888844789999999975 5566666
Q ss_pred cccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++. ..+..+.+++..+ ...+++.+.+++.++++++
T Consensus 73 -~~~-~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 73 -DEA-AALGVKAVWLQPG----AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp -HHH-HHHT-SEEEE-TT----S--HHHHHHHHHTT-EEEE
T ss_pred -HHH-HHcCCCEEEEEcc----hHHHHHHHHHHHcCCEEEe
Confidence 222 2234555666443 5667888888889998885
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=65.28 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=49.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh---C------CCcc-CCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS---L------GAKY-QPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~---~------g~~~-~~~~~~~~~~aDivv~~~p~ 137 (290)
++||+|||+|.+|..+|-.+...|. ++.++|++.++.+.... . .... ..+. +.+++||+||++.-.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~ 83 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA 83 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 6899999999999999999998887 89999998776433221 0 1111 2334 457999999997653
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00034 Score=65.12 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=47.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
.++|.|||.|.+|.++|+.|...|++|.++|+++..........-....+.+...+++|+||.+.+.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 47899999999999999999999999999998765432211000011223334457789888776544
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.80 E-value=7e-05 Score=62.43 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=31.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~ 103 (290)
..+|+|+|+|.+|..+|..|+..|. +++++|++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 6899999999999999999999998 69999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.8e-05 Score=68.74 Aligned_cols=93 Identities=25% Similarity=0.400 Sum_probs=71.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCc------cCCCHHHHhhcCCeEEEEeCCh-hHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAK------YQPSPDEVAASCDVTFAMLADP-ESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~------~~~~~~~~~~~aDivv~~~p~~-~~~~ 142 (290)
.-+|.|||.|-+|..-|+.+...|.+|++.|+|.++...+.. .+.+ ...++++.+.++|+||-++--+ ....
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaP 247 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAP 247 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCc
Confidence 578999999999999999999999999999999988777665 2221 1235788899999998776322 2223
Q ss_pred HHhcccccccccCCCCCEEEEec
Q 022909 143 DVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s 165 (290)
.++ .++..++||||.++||++
T Consensus 248 kLv--t~e~vk~MkpGsVivDVA 268 (371)
T COG0686 248 KLV--TREMVKQMKPGSVIVDVA 268 (371)
T ss_pred eeh--hHHHHHhcCCCcEEEEEE
Confidence 333 355678999999999996
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00012 Score=64.21 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=63.0
Q ss_pred CeEEEEcccHhHHHHHHHHHH-CCCeEE-EEeCCccch--hhHHhCCCcc-CCCHHHHhh--cCCeEEEEeCChhHHHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLK-AGCDVT-VWNRTKSKC--DPLISLGAKY-QPSPDEVAA--SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~-~g~~V~-~~d~~~~~~--~~~~~~g~~~-~~~~~~~~~--~aDivv~~~p~~~~~~~~ 144 (290)
.+|||||+|+||+.++..+.. .+.++. ++|+++++. ...++.|+.. .++.+++++ +.|+|++++|...+.+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 589999999999998777764 356655 678887653 3334467653 457888886 478899999876554443
Q ss_pred hcccccccccCCCCCEEEEecCCC
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~ 168 (290)
. ..++.|+.+|+.+...
T Consensus 82 ~-------~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 82 R-------LLAELGKIVIDLTPAA 98 (285)
T ss_pred H-------HHHHcCCEEEECCccc
Confidence 2 3456788887776433
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.2e-05 Score=67.20 Aligned_cols=67 Identities=12% Similarity=0.196 Sum_probs=47.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-------------------CCCccCCCHHHHhhcCCe
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDV 130 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDi 130 (290)
.||||+|+|+||+.+++.+... ++++. +++++++....+.+ .++....+.++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 6899999999999999998764 57765 55655433332222 123344567888888999
Q ss_pred EEEEeCCh
Q 022909 131 TFAMLADP 138 (290)
Q Consensus 131 vv~~~p~~ 138 (290)
|+.++|..
T Consensus 82 VIdaT~~~ 89 (341)
T PRK04207 82 VVDATPGG 89 (341)
T ss_pred EEECCCch
Confidence 99998764
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0001 Score=64.33 Aligned_cols=73 Identities=25% Similarity=0.349 Sum_probs=59.6
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||-| .+|+.+|..|...|..|+++.... .++.+.+++||+||.+++.+.- + .
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~----i--~- 215 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDL----I--K- 215 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCc----C--C-
Confidence 8999999998 999999999999999999885422 2456789999999999977442 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++++|+++||++.
T Consensus 216 --~~~vk~GavVIDvGi 230 (285)
T PRK14191 216 --ASMVKKGAVVVDIGI 230 (285)
T ss_pred --HHHcCCCcEEEEeec
Confidence 345799999999974
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00011 Score=64.14 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=60.6
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||-+. +|+.++..|...|..|++++... .++.+..+++|+||.++..+. ++ .
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p~----~i--~- 222 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGVKH----LI--K- 222 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCCcc----cc--C-
Confidence 89999999988 99999999999999999888432 357788899999999987653 33 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++++|+++||++.
T Consensus 223 --~~~vk~gavVIDvGi 237 (287)
T PRK14176 223 --ADMVKEGAVIFDVGI 237 (287)
T ss_pred --HHHcCCCcEEEEecc
Confidence 346899999999975
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00011 Score=60.21 Aligned_cols=87 Identities=13% Similarity=0.215 Sum_probs=62.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh---CCCccC--CC----HHHHhhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS---LGAKYQ--PS----PDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~---~g~~~~--~~----~~~~~~~aDivv~~~p~~~~ 140 (290)
+++|.|||- ..+|+.++..|...|..|+++|.+.-.. +.. ..-..+ .+ +.+.+++|||||.+++.+.-
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~ 139 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNY 139 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCCCCC
Confidence 899999995 6789999999999999999997543111 000 000011 12 67889999999999988543
Q ss_pred HHHHhcccccccccCCCCCEEEEecCC
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
. + . .+++|+|+++||++..
T Consensus 140 ~---i--~---~d~ik~GavVIDVGi~ 158 (197)
T cd01079 140 K---V--P---TELLKDGAICINFASI 158 (197)
T ss_pred c---c--C---HHHcCCCcEEEEcCCC
Confidence 0 2 1 3567899999999754
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00022 Score=68.86 Aligned_cols=75 Identities=17% Similarity=0.300 Sum_probs=58.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC---CCHHHH-----hhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDEV-----AASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~~-----~~~aDivv~~~p~~~~~~ 142 (290)
..+|.|+|+|++|+.+++.|.+.|++|.+.|+++++.+++++.|.... .+.++. ++++|.++++++.+.+..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHH
Confidence 467999999999999999999999999999999998888887654321 112223 357899999998866655
Q ss_pred HHh
Q 022909 143 DVA 145 (290)
Q Consensus 143 ~~~ 145 (290)
.++
T Consensus 497 ~iv 499 (558)
T PRK10669 497 EIV 499 (558)
T ss_pred HHH
Confidence 554
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.6e-05 Score=66.88 Aligned_cols=92 Identities=25% Similarity=0.310 Sum_probs=57.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHC-CCeEEE-EeCCccchhhHHh-CC-Cc-----cCCCHHH-HhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDPLIS-LG-AK-----YQPSPDE-VAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~-g~~V~~-~d~~~~~~~~~~~-~g-~~-----~~~~~~~-~~~~aDivv~~~p~~~ 139 (290)
++||+|||+ |.+|+.+++.|..+ ++++.. +++. +..+.+.+ .+ +. .+.++++ ..+++|+|++|+|...
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~ 80 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV 80 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH
Confidence 489999996 99999999999876 567654 5533 22222221 11 11 1223332 4567999999998754
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChh
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~ 170 (290)
. .++. ...++.|..+||.|..--.
T Consensus 81 ~-~~~v------~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 81 S-MDLA------PQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred H-HHHH------HHHHhCCCEEEECCcccCC
Confidence 3 3333 2234578999999855444
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00033 Score=61.97 Aligned_cols=113 Identities=17% Similarity=0.179 Sum_probs=79.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC---CCeEE-EEeCCccchhhHHh-CCC---ccCCCHHHHhhcC--CeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA---GCDVT-VWNRTKSKCDPLIS-LGA---KYQPSPDEVAASC--DVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~---g~~V~-~~d~~~~~~~~~~~-~g~---~~~~~~~~~~~~a--Divv~~~p~~~~ 140 (290)
.-|+||+|+|.|++-.++.+... ++.|. +++|+.+++..+++ .++ +...+.++++++. |+|.+..|.+++
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH 85 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH 85 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccH
Confidence 57899999999999999998653 56654 77898888877776 333 5678999999875 999999988776
Q ss_pred HHHHhcccccccccCCCCCEEEEec-CCChhHHHHHHHHHHHcCCcEEeC
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVS-TVDGDTSKLINGHIKATGASFLEA 189 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s-~~~~~~~~~l~~~l~~~~~~~~~~ 189 (290)
.+-+.. ...+...+++.-- .......+.+.++.+.+++.+.+.
T Consensus 86 ~evv~l------~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 86 YEVVML------ALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred HHHHHH------HHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 554431 1111222443321 234556778999999998777653
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=5e-05 Score=64.55 Aligned_cols=67 Identities=19% Similarity=0.381 Sum_probs=50.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh--CCCcc----CCC---HHHH-hhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKY----QPS---PDEV-AASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~--~g~~~----~~~---~~~~-~~~aDivv~~~p~~ 138 (290)
|++.|||+|++|..+|+.|...|++|.+.++++++.++... .+... .++ +.++ +.++|+++.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 68999999999999999999999999999999988777333 32221 112 3333 45689999988653
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00016 Score=63.85 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=72.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCc---cchhhHHh----CC----CccC--C---CHHHHhhcCCeEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTK---SKCDPLIS----LG----AKYQ--P---SPDEVAASCDVTFA 133 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~---~~~~~~~~----~g----~~~~--~---~~~~~~~~aDivv~ 133 (290)
++++.|+|+|.+|++++..|...|.+ |.+++|++ ++.+.+.+ .+ +... + ++++.++.+|+||.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilIN 205 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVN 205 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEE
Confidence 68899999999999999999999986 99999986 44444332 11 1111 1 22345567899999
Q ss_pred EeCChhH--HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 134 MLADPES--AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 134 ~~p~~~~--~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++|.... ...... .....+.++.+++|+.-.+.. -.+.++.++.|.+.++
T Consensus 206 aTp~Gm~~~~~~~~~---~~~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~ 257 (289)
T PRK12548 206 ATLVGMKPNDGETNI---KDTSVFRKDLVVADTVYNPKK--TKLLEDAEAAGCKTVG 257 (289)
T ss_pred eCCCCCCCCCCCCCC---CcHHhcCCCCEEEEecCCCCC--CHHHHHHHHCCCeeeC
Confidence 9985421 111100 012346778888888654433 2566666777666554
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00021 Score=63.74 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=60.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh----C-------CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS----L-------GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~----~-------g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
.+||+|||+|.+|..+|..+...|. ++.++|+++++.+.... . .+....+.++ +++||+||++.-.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~ 81 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA 81 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence 4799999999999999999988775 79999998765432211 0 1222356665 7999999996542
Q ss_pred h---hHHH-HHhccccc-------ccccCCCCCEEEEecC
Q 022909 138 P---ESAM-DVACGKHG-------AASGMGPGKGYVDVST 166 (290)
Q Consensus 138 ~---~~~~-~~~~~~~~-------~~~~~~~~~~lin~s~ 166 (290)
+ ..++ .++..+.. .+....+++++|++|.
T Consensus 82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 1 1222 11111111 1223467888888863
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00034 Score=52.75 Aligned_cols=85 Identities=22% Similarity=0.384 Sum_probs=58.6
Q ss_pred EEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC----CCHHHH----hhcCCeEEEEeCChhHHHHHh
Q 022909 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPDEV----AASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~----~~~aDivv~~~p~~~~~~~~~ 145 (290)
|.|+|+|.+|+.+++.|.+.+.+|.+.+++++..+.+.+.+.... .+.+.+ ++++|.|+++.+.+.....+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 579999999999999999977799999999998888887664321 222222 357899999987765544443
Q ss_pred cccccccccCCCCCEEE
Q 022909 146 CGKHGAASGMGPGKGYV 162 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~li 162 (290)
.....+.+...++
T Consensus 81 ----~~~r~~~~~~~ii 93 (116)
T PF02254_consen 81 ----LLARELNPDIRII 93 (116)
T ss_dssp ----HHHHHHTTTSEEE
T ss_pred ----HHHHHHCCCCeEE
Confidence 1234444544444
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00013 Score=64.99 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=49.4
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC--CeEEEEeCCccchhh-HHh-CCC--------ccCCCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDP-LIS-LGA--------KYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~~~~~-~~~-~g~--------~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
|||+|||+|.+|..+|..|...| .+|.++|+++++.+. ..+ ... ....+. +.+++||+|+++.+.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 47999999999999999999988 589999999876542 111 111 112344 4589999999999864
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00014 Score=65.79 Aligned_cols=92 Identities=21% Similarity=0.295 Sum_probs=58.8
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-C----CC--ccCC--CHHHHhhcCCeEEEEeCChh
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-L----GA--KYQP--SPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~----g~--~~~~--~~~~~~~~aDivv~~~p~~~ 139 (290)
++|+|+|+ |.+|+.+++.|..+ ++++. +++++....+.+.+ . +. .... +.+++++++|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999997 99999999999976 56777 54654322222221 1 11 0111 4556666899999999874
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChh
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~ 170 (290)
....+. ....+.|..+||.|...-.
T Consensus 80 ~s~~~~------~~~~~~G~~VIDlS~~fR~ 104 (346)
T TIGR01850 80 VSAELA------PELLAAGVKVIDLSADFRL 104 (346)
T ss_pred HHHHHH------HHHHhCCCEEEeCChhhhc
Confidence 334443 1223568999999854433
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00016 Score=65.43 Aligned_cols=115 Identities=19% Similarity=0.141 Sum_probs=68.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC----------CCeEE-EEeCCcc----------chhhHHh-CCC-c------cCCCH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA----------GCDVT-VWNRTKS----------KCDPLIS-LGA-K------YQPSP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~----------g~~V~-~~d~~~~----------~~~~~~~-~g~-~------~~~~~ 121 (290)
..+|+|+|+|.||+.+++.+... +.+|. ++|++.. +...+.+ .+. . ...++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 47899999999999999998754 35544 6675321 1111111 121 1 12478
Q ss_pred HHHhh--cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCCh-hHHHHHHHHHHHcCCcEE
Q 022909 122 DEVAA--SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFL 187 (290)
Q Consensus 122 ~~~~~--~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~-~~~~~l~~~l~~~~~~~~ 187 (290)
++++. +.|+|+.++|...+..+.. .+-....++.|..+|-.+-... ...++|.+..++.+..+.
T Consensus 82 ~ell~~~~~DvVvd~T~s~~~~~~~a--~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~ 148 (341)
T PRK06270 82 LEVIRSVDADVVVEATPTNIETGEPA--LSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFR 148 (341)
T ss_pred HHHhhccCCCEEEECCcCcccccchH--HHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEE
Confidence 88885 5799999998644321110 0111455677888774432221 235677787777777654
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00012 Score=65.42 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=47.1
Q ss_pred EEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-C------------------CCccCCCHHHHhhcCCeEE
Q 022909 74 IGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-L------------------GAKYQPSPDEVAASCDVTF 132 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~------------------g~~~~~~~~~~~~~aDivv 132 (290)
|||+|+|+||+.+++.+... +++|. +.|.+++....++. . ++....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 69999999999999998754 56765 55655553323322 1 2333457899999999999
Q ss_pred EEeCChh
Q 022909 133 AMLADPE 139 (290)
Q Consensus 133 ~~~p~~~ 139 (290)
.|+|...
T Consensus 81 e~Tp~~~ 87 (333)
T TIGR01546 81 DATPGGI 87 (333)
T ss_pred ECCCCCC
Confidence 9998653
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00037 Score=67.78 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=73.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC---CCHHHH-----hhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDEV-----AASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~~-----~~~aDivv~~~p~~~~~~ 142 (290)
..+|.|+|+|++|+.+++.|.+.|+++.+.|+++++.+.+++.|.... .+-++. ++++|.++++++.++...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 467999999999999999999999999999999999888877664321 122233 457899999998876665
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.+.. ....+.|+..+|-.++. . .-.+.+++.|...+-
T Consensus 480 ~i~~----~~r~~~p~~~IiaRa~~-~----~~~~~L~~~Ga~~vv 516 (601)
T PRK03659 480 KIVE----LCQQHFPHLHILARARG-R----VEAHELLQAGVTQFS 516 (601)
T ss_pred HHHH----HHHHHCCCCeEEEEeCC-H----HHHHHHHhCCCCEEE
Confidence 5541 23344555555433221 1 223345555665543
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00037 Score=63.02 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=59.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh--------CC-Ccc--CCCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS--------LG-AKY--QPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~--------~g-~~~--~~~~~~~~~~aDivv~~~p~~ 138 (290)
+||+|||+|++|..+|-.+...+. ++.++|+++++++..+. .+ ... ..+.++ +++||+||++.-.+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCCCC
Confidence 699999999999999999988775 79999998765432211 01 122 134444 89999999985432
Q ss_pred ---hHHH-HHhcccc-------cccccCCCCCEEEEecC
Q 022909 139 ---ESAM-DVACGKH-------GAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ---~~~~-~~~~~~~-------~~~~~~~~~~~lin~s~ 166 (290)
..++ .++..+. +.+....+++++|+++.
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1122 2221111 11233457788888863
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00018 Score=62.62 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=60.4
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|+|.+ ..|+.++..|...|..|+.+.++. .++.+.+++||+||.+++.+ +++ .
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~----~lv--~- 210 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKA----GFI--T- 210 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcc----ccc--C-
Confidence 8999999988 999999999999999999887543 25778899999999999764 334 2
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++++|+++||++.
T Consensus 211 --~~~vk~GavVIDVgi 225 (279)
T PRK14178 211 --PDMVKPGATVIDVGI 225 (279)
T ss_pred --HHHcCCCcEEEEeec
Confidence 234699999999974
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00029 Score=61.62 Aligned_cols=111 Identities=23% Similarity=0.241 Sum_probs=77.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC----CC-ccCCCHHHH--hhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL----GA-KYQPSPDEV--AASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~----g~-~~~~~~~~~--~~~aDivv~~~p~~~~~~ 142 (290)
++++.|+|+|-.+++++..|+..|. +|++++|+.++.+++++. +. .......++ ..++|+||.++|....-.
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~ 205 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGP 205 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCC
Confidence 6899999999999999999999995 799999999998887652 11 011122222 226999999999644322
Q ss_pred H---HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 143 D---VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 143 ~---~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
. .+ . .+.++++.++.|+--.+..+ .+.+..++.|...++
T Consensus 206 ~~~~~~----~-~~~l~~~~~v~D~vY~P~~T--plL~~A~~~G~~~id 247 (283)
T COG0169 206 EGDSPV----P-AELLPKGAIVYDVVYNPLET--PLLREARAQGAKTID 247 (283)
T ss_pred CCCCCC----c-HHhcCcCCEEEEeccCCCCC--HHHHHHHHcCCeEEC
Confidence 1 12 1 45678899999985544432 566667777766555
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00042 Score=53.57 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=48.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc-----CCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-----QPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~~~~~~~~~~aDivv~~~p~~ 138 (290)
+++|.+||+| -|..+|..|...|++|++.|.+++..+.+++.+... ++...++.+++|+|...=|.+
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~ 88 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPR 88 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCH
Confidence 5889999999 999999999999999999999998777666654322 122234455566655555443
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00021 Score=63.74 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=58.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCC------CHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP------SPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~------~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
+++|+|+|+|.+|..-.+.+++.|.+|+++|+++++.+.+++.|...+- ..+++-+..|+++.++| +......
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~ 245 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPS 245 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHH
Confidence 6899999999999999999999999999999999988777665542211 11222222677777766 4433332
Q ss_pred hcccccccccCCCCCEEEEe
Q 022909 145 ACGKHGAASGMGPGKGYVDV 164 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~ 164 (290)
++.++++..++-+
T Consensus 246 -------l~~l~~~G~~v~v 258 (339)
T COG1064 246 -------LKALRRGGTLVLV 258 (339)
T ss_pred -------HHHHhcCCEEEEE
Confidence 3445555555544
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00027 Score=61.50 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=59.5
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||-+ .+|+.++..|...|..|+++.... .++.+.+++||+||.++..+.- + .
T Consensus 157 Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~----i--~- 215 (281)
T PRK14183 157 GKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNL----I--T- 215 (281)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccc----c--C-
Confidence 8999999987 899999999999999999775321 2567889999999999977442 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.++|+++||++.
T Consensus 216 --~~~vk~gavvIDvGi 230 (281)
T PRK14183 216 --EDMVKEGAIVIDIGI 230 (281)
T ss_pred --HHHcCCCcEEEEeec
Confidence 356789999999974
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00015 Score=64.99 Aligned_cols=112 Identities=14% Similarity=0.209 Sum_probs=76.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHH-CC-CeEEEEeCCccchhhHHhC-CCccCCCHHHHhhcCCeEEEEeCChhHHHHH-h
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDV-A 145 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~-~g-~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~-~ 145 (290)
+++|.|+|+ |.||+.+++.|.. .| .++++++|++++...+.+. +.....++++.+.++|+|+.+...+. .+ +
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~---~~~I 231 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK---GVEI 231 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc---CCcC
Confidence 799999998 8999999999975 45 4899999988777665542 11122367889999999987764322 22 3
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCC
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK 195 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~ 195 (290)
++ +.++++.++||++.-.-++. ...+.++.+++..+...+
T Consensus 232 --~~---~~l~~~~~viDiAvPRDVd~-----~v~~~~V~v~~gG~V~~p 271 (340)
T PRK14982 232 --DP---ETLKKPCLMIDGGYPKNLDT-----KVQGPGIHVLKGGIVEHS 271 (340)
T ss_pred --CH---HHhCCCeEEEEecCCCCCCc-----ccCCCCEEEEeCCccccC
Confidence 22 34578999999976544432 122367777775554433
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00013 Score=58.94 Aligned_cols=67 Identities=22% Similarity=0.211 Sum_probs=51.2
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----CCCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----~g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
|||+|||+ |.+|+.+++-+...||+|++.-|++.+....+. ..+.-.+++.+.+..-|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 68999995 999999999999999999999999987654321 12222234456788899999987543
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00023 Score=66.78 Aligned_cols=69 Identities=26% Similarity=0.323 Sum_probs=53.4
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCccC-------CCHHHH-hhcCCeEEEEeCChhH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQ-------PSPDEV-AASCDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~-------~~~~~~-~~~aDivv~~~p~~~~ 140 (290)
|+|.|+|+|++|+.+++.|...|++|.++++++++.+.+.+ .++... ..++++ +.++|.|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 57999999999999999999999999999999988777655 332211 123444 6789999999876443
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00037 Score=61.19 Aligned_cols=74 Identities=24% Similarity=0.322 Sum_probs=60.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||- ..+|+.++..|...|..|+++.... .++.+..++|||||.+++.+. ++ .
T Consensus 158 Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGkp~----~i--~- 216 (297)
T PRK14186 158 GKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGRPN----LI--G- 216 (297)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC----cc--C-
Confidence 899999995 7789999999999999999885431 267788999999999998754 33 1
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.+++++|+++||++..
T Consensus 217 --~~~ik~gavVIDvGin 232 (297)
T PRK14186 217 --AEMVKPGAVVVDVGIH 232 (297)
T ss_pred --HHHcCCCCEEEEeccc
Confidence 4568999999999643
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00038 Score=60.66 Aligned_cols=73 Identities=21% Similarity=0.358 Sum_probs=59.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||- ..+|+.++..|...|..|+++.... .++.+..++|||||.+++.+.- + .
T Consensus 156 Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p~~----i--~- 214 (282)
T PRK14169 156 GKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVPHF----I--G- 214 (282)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCcCc----c--C-
Confidence 899999995 7789999999999999999885432 2577889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++++|+++||++.
T Consensus 215 --~~~vk~GavVIDvGi 229 (282)
T PRK14169 215 --ADAVKPGAVVIDVGI 229 (282)
T ss_pred --HHHcCCCcEEEEeec
Confidence 356899999999964
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0004 Score=60.53 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=60.8
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.||| ...+|+.++..|...|..|++++... .++.+..++||+||.++..+.- + .
T Consensus 159 Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk~~~----i--~- 217 (284)
T PRK14177 159 GKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGKPEF----I--K- 217 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCCcCc----c--C-
Confidence 89999999 57899999999999999999887432 3577889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.++.++|+++||++..
T Consensus 218 --~~~ik~gavVIDvGin 233 (284)
T PRK14177 218 --ADWISEGAVLLDAGYN 233 (284)
T ss_pred --HHHcCCCCEEEEecCc
Confidence 4567999999999753
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0004 Score=60.71 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=60.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.||| ...+|+.++..|...|..|+++.... .++.+..++|||||.++..+. ++ .
T Consensus 155 Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGkp~----~i--~- 213 (287)
T PRK14173 155 GKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGRPH----LI--T- 213 (287)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcC----cc--C-
Confidence 89999999 47889999999999999999886432 257788999999999998753 33 1
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.+++|+|+++||++..
T Consensus 214 --~~~vk~GavVIDVGin 229 (287)
T PRK14173 214 --PEMVRPGAVVVDVGIN 229 (287)
T ss_pred --HHHcCCCCEEEEccCc
Confidence 3567999999999643
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00042 Score=60.31 Aligned_cols=73 Identities=25% Similarity=0.367 Sum_probs=59.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||- ..+|+.++..|...|..|+++.... .++.+..++||+||.+++.+.- + .
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvGkp~~----i--~- 216 (278)
T PRK14172 158 GKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIGRPKF----I--D- 216 (278)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----c--C-
Confidence 899999995 7789999999999999999887432 3677889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.++|+++||++.
T Consensus 217 --~~~ik~gavVIDvGi 231 (278)
T PRK14172 217 --EEYVKEGAIVIDVGT 231 (278)
T ss_pred --HHHcCCCcEEEEeec
Confidence 356899999999953
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00037 Score=61.28 Aligned_cols=111 Identities=18% Similarity=0.153 Sum_probs=73.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC-----CC---ccCC--CHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-----GA---KYQP--SPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~-----g~---~~~~--~~~~~~~~aDivv~~~p~~~ 139 (290)
++++.|+|+|..|++++-.|...|. +|++++|+.++.+.+.+. +. ...+ +.++.+..+|+||.++|...
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm 206 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGM 206 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCC
Confidence 6899999999999999999999997 799999999887776542 11 1111 12345678999999998543
Q ss_pred HHH-H-HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 140 SAM-D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 140 ~~~-~-~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.-. . .+ + ...+.++.++.|+--.+.. -.+.++.++.|...++
T Consensus 207 ~~~~~~~~--~---~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 207 PAHPGTAF--D---VSCLTKDHWVGDVVYMPIE--TELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCC--C---HHHcCCCcEEEEcccCCCC--CHHHHHHHHCCCEEEc
Confidence 110 0 01 1 2345677788888544422 2456666666665554
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00043 Score=60.32 Aligned_cols=73 Identities=23% Similarity=0.258 Sum_probs=59.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||- ..+|+.++..|...|..|+++.... .++.+..++|||||.++..+.- + .
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~----i--~- 215 (282)
T PRK14166 157 GKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNL----L--R- 215 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----c--C-
Confidence 899999995 7789999999999999999887532 3577889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.++|+++||++-
T Consensus 216 --~~~vk~GavVIDvGi 230 (282)
T PRK14166 216 --SDMVKEGVIVVDVGI 230 (282)
T ss_pred --HHHcCCCCEEEEecc
Confidence 345789999999963
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00045 Score=60.36 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=60.4
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.||| ...+|+.++..|...|..|+++.... .++.+.+++||+||.++..+. ++ .
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~~~ADIvI~AvG~p~----~i--~- 216 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELTKQADILIVAVGKPK----LI--T- 216 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCC----cC--C-
Confidence 89999999 58899999999999999999886421 367788999999999997754 34 2
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.+++++|+++||++..
T Consensus 217 --~~~ik~gavVIDvGi~ 232 (284)
T PRK14190 217 --ADMVKEGAVVIDVGVN 232 (284)
T ss_pred --HHHcCCCCEEEEeecc
Confidence 3557999999999743
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00046 Score=60.18 Aligned_cols=74 Identities=26% Similarity=0.305 Sum_probs=60.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||- ..+|+.++..|...|..|+++.... .++.+.+++|||||.+++.+.- + .
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~~~~----i--~- 215 (284)
T PRK14170 157 GKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGLAKF----V--K- 215 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCc----c--C-
Confidence 899999995 6789999999999999999886432 3577889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.++.++|+++||++..
T Consensus 216 --~~~vk~GavVIDvGin 231 (284)
T PRK14170 216 --KDYIKPGAIVIDVGMD 231 (284)
T ss_pred --HHHcCCCCEEEEccCc
Confidence 3567899999999754
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0009 Score=55.92 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=31.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|+|+|.+|..+++.|...|. +++++|++.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 7899999999999999999999997 899999874
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00016 Score=53.66 Aligned_cols=85 Identities=21% Similarity=0.163 Sum_probs=53.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-cCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||.|.+|..=++.|...|.+|+++++.. +..++ .+. ....+++.++++|+|+.+++. +.....+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~~-~i~~~~~~~~~~l~~~~lV~~at~d-~~~n~~i---- 77 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSEG-LIQLIRREFEEDLDGADLVFAATDD-PELNEAI---- 77 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHHT-SCEEEESS-GGGCTTESEEEE-SS--HHHHHHH----
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhhh-HHHHHhhhHHHHHhhheEEEecCCC-HHHHHHH----
Confidence 7999999999999999999999999999999885 11111 111 112334557788888888655 3333333
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
....+.-.+++|++.
T Consensus 78 --~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 78 --YADARARGILVNVVD 92 (103)
T ss_dssp --HHHHHHTTSEEEETT
T ss_pred --HHHHhhCCEEEEECC
Confidence 222333456677643
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00035 Score=63.93 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=61.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHC-CCeEEEEeCCccchhhHHhCC-------CccCCCHHH-HhhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLG-------AKYQPSPDE-VAASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~-g~~V~~~d~~~~~~~~~~~~g-------~~~~~~~~~-~~~~aDivv~~~p~~~~ 140 (290)
.+||+|+|+ |.+|+.+.+.|..+ +++|..+.++....+.+.+.. .....+.+. .++++|+|++++|. ..
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~-~~ 116 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH-GT 116 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH-HH
Confidence 689999995 99999999999988 678887776544332222211 111122222 25789999999986 44
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHH
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 172 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~ 172 (290)
..++. +.++.+..+||.|...-.+.
T Consensus 117 s~~i~-------~~~~~g~~VIDlSs~fRl~~ 141 (381)
T PLN02968 117 TQEII-------KALPKDLKIVDLSADFRLRD 141 (381)
T ss_pred HHHHH-------HHHhCCCEEEEcCchhccCC
Confidence 44544 22456889999986554443
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00052 Score=59.95 Aligned_cols=73 Identities=23% Similarity=0.420 Sum_probs=59.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||- .-+|+.++..|...|..|+++.... .++.+..++|||||.++..+. ++ .
T Consensus 159 GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvGkp~----~i--~- 217 (288)
T PRK14171 159 GKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIGSPL----KL--T- 217 (288)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCCC----cc--C-
Confidence 899999995 6789999999999999999876422 367788999999999998753 33 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.|+|+++||++-
T Consensus 218 --~~~vk~GavVIDvGi 232 (288)
T PRK14171 218 --AEYFNPESIVIDVGI 232 (288)
T ss_pred --HHHcCCCCEEEEeec
Confidence 356799999999963
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00051 Score=59.86 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=59.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||- ..+|+.++..|...|..|+++.... .++.+..++||+||.+++.+.- + .
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~----i--~- 216 (282)
T PRK14180 158 GAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNF----I--T- 216 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCc----C--C-
Confidence 899999995 7789999999999999999886432 2567778999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.++|+++||++.
T Consensus 217 --~~~vk~gavVIDvGi 231 (282)
T PRK14180 217 --ADMVKEGAVVIDVGI 231 (282)
T ss_pred --HHHcCCCcEEEEecc
Confidence 356789999999964
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0018 Score=60.80 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=32.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
+++|.|+|.|.+|.++|+.|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6999999999999999999999999999999975
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00057 Score=59.88 Aligned_cols=73 Identities=26% Similarity=0.333 Sum_probs=59.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||- ..+|+.++..|...|..|+++.... .++.+.+++|||||.+++.+.- + .
T Consensus 160 Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp~~----i--~- 218 (294)
T PRK14187 160 GSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIPNF----V--K- 218 (294)
T ss_pred CCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCc----c--C-
Confidence 899999995 7789999999999999999887532 3577889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.++|+++||++.
T Consensus 219 --~~~ik~gaiVIDVGi 233 (294)
T PRK14187 219 --YSWIKKGAIVIDVGI 233 (294)
T ss_pred --HHHcCCCCEEEEecc
Confidence 356789999999963
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00025 Score=63.95 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=31.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
.++|.|||+|.+|..+|+.|...|+ +++++|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 7899999999999999999999998 899999874
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00072 Score=60.06 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=47.3
Q ss_pred EEEEcccHhHHHHHHHHHHCC--CeEEEEeCCccchhhHHh-------C----CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 74 IGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLIS-------L----GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~~~~~~~~-------~----g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
|+|||+|.+|..+|-.++..| .++.++|+++++.+.... . .+....+ .+.+++||+|+++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCC
Confidence 689999999999999999888 589999998876544322 0 0111234 4578999999999874
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0006 Score=59.88 Aligned_cols=73 Identities=29% Similarity=0.462 Sum_probs=60.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||- ..+|+.++..|...|..|+++... +.++++.+++||+||.++..+ +++ .
T Consensus 167 Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~----~~i--~- 225 (299)
T PLN02516 167 GKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQA----MMI--K- 225 (299)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCc----Ccc--C-
Confidence 899999995 678999999999999999988643 236788899999999999774 344 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++++|+++||++.
T Consensus 226 --~~~vk~gavVIDvGi 240 (299)
T PLN02516 226 --GDWIKPGAAVIDVGT 240 (299)
T ss_pred --HHHcCCCCEEEEeec
Confidence 466899999999964
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00063 Score=59.39 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=60.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHH--CCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLK--AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~--~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
++++.||| ...+|+.++..|.. .+..|+++... +.++.+.+++||+||.++..+. ++
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~----~i-- 217 (284)
T PRK14193 158 GAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAH----LV-- 217 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcC----cc--
Confidence 89999999 57899999999988 68899988643 2367888999999999998754 33
Q ss_pred cccccccCCCCCEEEEecCC
Q 022909 148 KHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~ 167 (290)
. .+++++|+++||++..
T Consensus 218 ~---~~~ik~GavVIDvGin 234 (284)
T PRK14193 218 T---ADMVKPGAAVLDVGVS 234 (284)
T ss_pred C---HHHcCCCCEEEEcccc
Confidence 1 4568999999999643
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0015 Score=58.10 Aligned_cols=168 Identities=23% Similarity=0.318 Sum_probs=92.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--------CCe--EE-EEeCCccchhhHHhCC-CccCCCH-----HHHhh--cCCeE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--------GCD--VT-VWNRTKSKCDPLISLG-AKYQPSP-----DEVAA--SCDVT 131 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--------g~~--V~-~~d~~~~~~~~~~~~g-~~~~~~~-----~~~~~--~aDiv 131 (290)
..+|+|+|+|.+|+.+++.|..+ |.+ |. +.+|+........-.+ ....++. .+++. +.|+|
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDVV 82 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCEE
Confidence 58899999999999999999774 333 33 4455443322111111 1122223 34443 46789
Q ss_pred EEEeCCh-hHHHHHhcccccccccCCCCCEEEEecCCChhH--HHHHHHHHHHcCCcEE-eCccCCCCccccCCceEEEe
Q 022909 132 FAMLADP-ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT--SKLINGHIKATGASFL-EAPVSGSKKPAEDGQLIFLA 207 (290)
Q Consensus 132 v~~~p~~-~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~--~~~l~~~l~~~~~~~~-~~p~~~~~~~~~~~~~~~~~ 207 (290)
+.+++.+ ...+. . ....+.++.|..+|-. +-.+.. -.+|.+..++.+..+. .+.+.++.|
T Consensus 83 ve~~~~d~~~~~~-~---~~~~~al~~GkhVVTa-NK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP----------- 146 (333)
T COG0460 83 VELVGGDVEPAEP-A---DLYLKALENGKHVVTA-NKALLALHYHELREAAEKNGVKLLYEATVGGGIP----------- 146 (333)
T ss_pred EecCcccCCchhh-H---HHHHHHHHcCCeEECC-CchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc-----------
Confidence 9888863 22331 1 1235678889888733 323322 3467777777666543 344444332
Q ss_pred cCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCC
Q 022909 208 AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS----CTFSYSFLTLEFVDF 266 (290)
Q Consensus 208 ~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~----~~~~ea~~l~~~~G~ 266 (290)
.++.+++.+. |.++..+..+-++-. |++..-| ..+.|+++.|++.|.
T Consensus 147 -----iI~~lr~~l~--g~~I~~i~GIlNGT~-----NyIlt~m~~~~~~f~dal~eAq~lGy 197 (333)
T COG0460 147 -----IIKLLRELLA--GDEILSIRGILNGTT-----NYILTRMEEGGLSFEDALAEAQELGY 197 (333)
T ss_pred -----hHHHHHhhcc--cCceEEEEEEEeccH-----HHHHHHHHccCCCHHHHHHHHHHcCC
Confidence 3345666666 666665554333322 2222222 256777777788775
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00069 Score=59.04 Aligned_cols=73 Identities=25% Similarity=0.319 Sum_probs=59.4
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.||| ...+|+.++..|...+..|+++.... .++.+..++||+||.+++.+. ++ .
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk~~----~i--~- 215 (282)
T PRK14182 157 GKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGKAE----LV--K- 215 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcC----cc--C-
Confidence 89999999 57789999999999999999886432 357788899999999998643 33 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.++|+++||++.
T Consensus 216 --~~~ik~gaiVIDvGi 230 (282)
T PRK14182 216 --GAWVKEGAVVIDVGM 230 (282)
T ss_pred --HHHcCCCCEEEEeec
Confidence 356799999999964
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0013 Score=62.41 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=51.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCC--CHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP--SPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~--~~~~~~~~aDivv~~~ 135 (290)
+++|.|+|+|..|.+.++.|...|++|+++|+++...+.+.+.|+.... ...+.++++|+||.+-
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence 6899999999999999999999999999999876655555555665432 2345567899888864
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0006 Score=56.96 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=50.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCC-CccC--CCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLG-AKYQ--PSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g-~~~~--~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
+++|.|||.|.+|...++.|...|++|+++++...+ ...+.+.+ +... .-.++.+.++|+|+.++.. +++...+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d-~elN~~i 87 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATND-PRVNEQV 87 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCC-HHHHHHH
Confidence 899999999999999999999999999999876432 22333222 2111 1113346788988888755 4444444
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0011 Score=64.86 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=72.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC---CCHHHHh-----hcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDEVA-----ASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~~~-----~~aDivv~~~p~~~~~~ 142 (290)
..+|-|+|+|++|+.+++.|.+.|.++++.|.++++.+.+++.|.... .+-.+++ +++|.++++++.++...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 478999999999999999999999999999999999888887665321 1222333 47899999997766655
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.+.. ..+.+.|+..++--++ +. .-.+.+++.|+..+.
T Consensus 480 ~i~~----~ar~~~p~~~iiaRa~-d~----~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 480 QLVE----LVKEHFPHLQIIARAR-DV----DHYIRLRQAGVEKPE 516 (621)
T ss_pred HHHH----HHHHhCCCCeEEEEEC-CH----HHHHHHHHCCCCEEe
Confidence 5541 2333445544443222 11 223445555666554
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0013 Score=61.92 Aligned_cols=64 Identities=23% Similarity=0.428 Sum_probs=48.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccch-----hhHHhCCCccC--CCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQ--PSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~-----~~~~~~g~~~~--~~~~~~~~~aDivv~~ 134 (290)
+++|+|+|+|..|.++|+.|...|++|.++|+++... ..+.+.|+... ....+.+.++|+||..
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S 84 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT 84 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC
Confidence 6899999999999999999999999999999875321 23555566543 2234556789998886
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00022 Score=66.42 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=47.2
Q ss_pred CeEEEEcccHhHHHHHH--HHH----HCCCeEEEEeCCccchhhHHh--------CC----CccCCCHHHHhhcCCeEEE
Q 022909 72 GRIGFLGMGIMGTPMAQ--NLL----KAGCDVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFA 133 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~--~l~----~~g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivv~ 133 (290)
+||+|||.|.+|...+- .+. -.+.+|.++|+++++.+.... .+ +..+++..+++++||+|++
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 68999999999965544 332 135689999999877553211 11 3345677899999999999
Q ss_pred EeCC
Q 022909 134 MLAD 137 (290)
Q Consensus 134 ~~p~ 137 (290)
+.-.
T Consensus 82 ti~v 85 (431)
T PRK15076 82 AIQV 85 (431)
T ss_pred eeee
Confidence 8765
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.002 Score=50.56 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=67.5
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CCCccCCCHHHHhhc--CCeEEEEeCChhHH
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVAAS--CDVTFAMLADPESA 141 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~~--aDivv~~~p~~~~~ 141 (290)
+|.|||+|.+|..+++.|...|. +++++|.+.-....+.. .|...++.+.+.+++ .++-+...+.....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 58999999999999999999998 79999987433222211 122222222222221 23333333322111
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
.. ..+.+++-.++|++... ......+.+.+++.++.++++...+
T Consensus 81 ~~-------~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 81 DN-------LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hh-------HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 11 02234566688887554 5556678888888899998876654
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00064 Score=60.92 Aligned_cols=73 Identities=23% Similarity=0.434 Sum_probs=59.8
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.||| ..-+|+.++..|...+..|+++.... .++.+.+++|||||.++..+.- + .
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGkp~~----i--~- 289 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQPNM----V--R- 289 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----C--C-
Confidence 89999999 57889999999999999999886432 3677889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.|+|+++||++-
T Consensus 290 --~d~vK~GAvVIDVGI 304 (364)
T PLN02616 290 --GSWIKPGAVVIDVGI 304 (364)
T ss_pred --HHHcCCCCEEEeccc
Confidence 356899999999853
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00067 Score=60.51 Aligned_cols=73 Identities=23% Similarity=0.373 Sum_probs=59.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||- ..+|+.++..|...|..|+++.... .++.+..++|||||.++..+.- + .
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGkp~~----v--~- 272 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGIPNL----V--R- 272 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCCcCc----c--C-
Confidence 899999995 6789999999999999999886432 2567889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++|+|+++||++.
T Consensus 273 --~d~vk~GavVIDVGi 287 (345)
T PLN02897 273 --GSWLKPGAVVIDVGT 287 (345)
T ss_pred --HHHcCCCCEEEEccc
Confidence 356899999999964
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00084 Score=58.65 Aligned_cols=73 Identities=23% Similarity=0.364 Sum_probs=58.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHC----CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
++++.|||- ..+|+.++..|... +..|+++.... .++.+.+++||+||.+++.+. ++
T Consensus 153 Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~p~----~i 214 (287)
T PRK14181 153 GRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGVPL----FI 214 (287)
T ss_pred CCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC----cc
Confidence 899999995 67899999999988 77888776422 367788999999999998753 33
Q ss_pred cccccccccCCCCCEEEEecC
Q 022909 146 CGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~ 166 (290)
. .+++|+|+++||++.
T Consensus 215 --~---~~~ik~GavVIDvGi 230 (287)
T PRK14181 215 --K---EEMIAEKAVIVDVGT 230 (287)
T ss_pred --C---HHHcCCCCEEEEecc
Confidence 1 456899999999964
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00096 Score=59.14 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=76.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHH---HHHhc-
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA---MDVAC- 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~---~~~~~- 146 (290)
+++++|||--.=-..+++.|.+.|++|.++.-..+. ....|+...++.+++++++|+|+..+|.+.+. +..+.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 689999999988899999999999999987643221 12346777778889999999999888754221 11100
Q ss_pred ----ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 147 ----GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 147 ----~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
-+++.++.|+++.+++ .+...+. +.+.+.++++.+++
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~~~ 119 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKLVE 119 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeEEE
Confidence 0234578899998554 3444443 33556678888766
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0016 Score=61.10 Aligned_cols=107 Identities=19% Similarity=0.275 Sum_probs=75.2
Q ss_pred CCeEEEEcc----cHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGM----GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~----G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
.++|+|||. |++|..+.+.+...|+ +|+.+++..+. -.|+..+.+++|+-...|++++++|. +.+..+
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~ 80 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQV 80 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc-----cCCccccCCHHHCCCCCCEEEEecCH-HHHHHH
Confidence 689999999 8899999999999888 67766665432 14677788999987788999999986 555666
Q ss_pred hcccccccccCCCCCEEEEecCCC-------hhHHHHHHHHHHHcCCcEEe
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVD-------GDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~-------~~~~~~l~~~l~~~~~~~~~ 188 (290)
+ ++..+ ..-..++|- +.+- ...++++.+..++.++++++
T Consensus 81 l---~e~~~-~gv~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 81 V---EECGE-KGVKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred H---HHHHh-cCCCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 5 22222 233344442 2222 22456788888888888765
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00085 Score=58.63 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=73.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC-CCccCCCHHHH-hhcCCeEEEEeCChhH--H--HH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEV-AASCDVTFAMLADPES--A--MD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~-~~~aDivv~~~p~~~~--~--~~ 143 (290)
++++.|+|+|..+++++..|...|. +|++++|++++.+.+.+. +.... +++ ...+|+||.++|.... . ..
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~---~~~~~~~~dlvINaTp~Gm~~~~~~~~ 198 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR---PDLGGIEADILVNVTPIGMAGGPEADK 198 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch---hhcccccCCEEEECCccccCCCCcccc
Confidence 4689999999999999999999997 599999999888777652 22111 111 2458999999985321 0 00
Q ss_pred -HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 144 -VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 144 -~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
-+ + ...++++.+++|+.-.+.. -.+.+..++.|...++
T Consensus 199 ~pi--~---~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 199 LAF--P---EAEIDAASVVFDVVALPAE--TPLIRYARARGKTVIT 237 (272)
T ss_pred CCC--C---HHHcCCCCEEEEeecCCcc--CHHHHHHHHCcCeEeC
Confidence 11 1 2346778888888654432 2566666777766654
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00039 Score=62.24 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=43.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~ 134 (290)
+++|.|||+|.||+.+++.|...|. +|++++|+.... .+.+.. . ...+...++|+||.+
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~~---~-~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTVV---R-EELSFQDPYDVIFFG 233 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhhh---h-hhhhcccCCCEEEEc
Confidence 7999999999999999999999995 699999997531 111100 0 111345689999986
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0007 Score=60.39 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=46.5
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCC--eEEEEeCCc--cchhhHH----h----CC----CccCCCHHHHhhcCCeEEEE
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTK--SKCDPLI----S----LG----AKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~--~V~~~d~~~--~~~~~~~----~----~g----~~~~~~~~~~~~~aDivv~~ 134 (290)
|||+|+|+ |.+|..++..+...|+ +|.++|+++ ++.+..+ + .+ +....+.+ .++++|+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence 68999997 9999999999999886 599999954 3321111 1 11 12233544 58999999999
Q ss_pred eCC
Q 022909 135 LAD 137 (290)
Q Consensus 135 ~p~ 137 (290)
...
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 864
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0032 Score=55.46 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=74.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccCCCHHHHhhc--CCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~--aDivv~~~p~~~~~~~~~~ 146 (290)
+.+|.|.|. |++|..+.+.|..+|++ .+|-.+|.+ .++ -.|+..+.+++|+-+. .|+.++++|. +.+...+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~--v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l- 82 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAI- 82 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCe--EeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHH-
Confidence 578999995 99999999999999987 444444431 111 1467778899998886 8999999986 5555555
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+ ..-...+|-.+.....+++++.+..++.++++++
T Consensus 83 --~e~~~-~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlG 121 (291)
T PRK05678 83 --LEAID-AGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIG 121 (291)
T ss_pred --HHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 22222 2223334434344444455888888888888876
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0032 Score=55.30 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=76.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhc--CCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivv~~~p~~~~~~~~~~~ 147 (290)
+.+|.|.| .|.+|+.+-+.+...|.+ .++..+|.+-.. .-.|+..+.+++|+-+. .|+.++++|. ..+...+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~-~v~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l-- 80 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGT-TVLGLPVFDSVKEAVEETGANASVIFVPA-PFAADAI-- 80 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcc-eecCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHH--
Confidence 67899999 699999999999999988 556666652110 12578888899998876 6999999986 5555555
Q ss_pred cccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+ ..-...+|-.+.....+++++.+..++.++++++
T Consensus 81 -~e~~~-~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilG 119 (286)
T TIGR01019 81 -FEAID-AGIELIVCITEGIPVHDMLKVKRYMEESGTRLIG 119 (286)
T ss_pred -HHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 22222 1222344434344444567888888888888776
|
ATP citrate lyases appear to form an outgroup. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0012 Score=58.16 Aligned_cols=113 Identities=14% Similarity=0.092 Sum_probs=72.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCcc---chhhHHhC-C----C-ccCCCH------HHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKS---KCDPLISL-G----A-KYQPSP------DEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~---~~~~~~~~-g----~-~~~~~~------~~~~~~aDivv~~ 134 (290)
++++.|+|+|..+++++..+...|. +|++++|+++ +.+.+.+. + . ....++ .+.+.++|+||.+
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEEC
Confidence 6899999999999999999998886 8999999954 55555431 1 1 011222 2345678999999
Q ss_pred eCChhH--HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 135 LADPES--AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 135 ~p~~~~--~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+|.... ..... ......++++.++.|+--.+.. -.+.++.+++|.+.++
T Consensus 204 Tp~Gm~~~~~~~~---~~~~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 204 TKVGMKPLENESL---VNDISLLHPGLLVTECVYNPHM--TKLLQQAQQAGCKTID 254 (288)
T ss_pred CCCCCCCCCCCCC---CCcHHHCCCCCEEEEecCCCcc--CHHHHHHHHCCCeEEC
Confidence 985321 11101 0012346778888888544432 2566777777776655
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00034 Score=57.00 Aligned_cols=62 Identities=27% Similarity=0.393 Sum_probs=49.0
Q ss_pred EEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-------cCCCHHHHhhcCCeEEEEeCC
Q 022909 74 IGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 74 IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivv~~~p~ 137 (290)
|.|+|. |.+|+.+++.|...|++|++..|++++.+. ..+++ -.+++.++++++|.|+.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 679995 999999999999999999999999887665 22221 112456678899999999874
|
... |
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00028 Score=52.56 Aligned_cols=81 Identities=14% Similarity=0.081 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHH---hCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCC
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLI---SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPG 158 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~---~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~ 158 (290)
-+..+++.|.+.|.+|.+||+.-....... ..++...+++++.++.+|.||++++.+. .+.+- -+++...|+++
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~-f~~l~--~~~~~~~~~~~ 94 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE-FRELD--WEEIAKLMRKP 94 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG-GGCCG--HHHHHHHSCSS
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH-HhccC--HHHHHHhcCCC
Confidence 457899999999999999999876544333 1467777899999999999999997643 33321 13345667788
Q ss_pred CEEEEec
Q 022909 159 KGYVDVS 165 (290)
Q Consensus 159 ~~lin~s 165 (290)
.+|+|+-
T Consensus 95 ~~iiD~~ 101 (106)
T PF03720_consen 95 PVIIDGR 101 (106)
T ss_dssp EEEEESS
T ss_pred CEEEECc
Confidence 8999873
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0013 Score=61.24 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=67.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEE-e----------CCccchhhHHh-C-----------CCccCCCHHHHhh-
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVW-N----------RTKSKCDPLIS-L-----------GAKYQPSPDEVAA- 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~-d----------~~~~~~~~~~~-~-----------g~~~~~~~~~~~~- 126 (290)
++||+|.|+|++|+.+|+.|...|.+|++. | .+.+.+.+..+ . +.... +.++++.
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~i~~~ 310 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGSPWSV 310 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCcccccc
Confidence 799999999999999999999999998866 6 23222211111 0 11222 3344444
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccC-CCCC-EEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGM-GPGK-GYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~-~~~~-~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+|||++-|...+.-+.+.. ..+ ++++ +|+-.++++. +.+-.+.|.++|+.++.
T Consensus 311 d~DVliPaAl~n~It~~~a-------~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 311 PCDIALPCATQNELDEEDA-------KTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred CCcEEEecCCcCcCCHHHH-------HHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 6999998876544433322 222 1233 4555555554 44566788889988764
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00068 Score=58.35 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=65.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCC-----cc--chhhH------Hh-C------------CCccCCCHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT-----KS--KCDPL------IS-L------------GAKYQPSPDE 123 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~-----~~--~~~~~------~~-~------------g~~~~~~~~~ 123 (290)
++||.|.|+|++|+.+|+.|...|.+|+ +.|.+ ++ ..+.+ .+ . +.+.. +.++
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~~~~ 116 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-EGKK 116 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-CCcc
Confidence 7999999999999999999999999988 55521 11 01111 11 1 12222 3344
Q ss_pred Hh-hcCCeEEEEeCChhHHHHHhcccccccccCC-CCC-EEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 124 VA-ASCDVTFAMLADPESAMDVACGKHGAASGMG-PGK-GYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 124 ~~-~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~-~~~-~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++ .+|||++-|- +.+.+ +++..+.++ +++ +|+-.++++. +. +-.+.|.++|+.++.
T Consensus 117 ~~~~~~DIliPcA-----l~~~I--~~~na~~i~~~~ak~I~EgAN~p~-t~-~a~~~L~~rGI~vvP 175 (254)
T cd05313 117 PWEVPCDIAFPCA-----TQNEV--DAEDAKLLVKNGCKYVAEGANMPC-TA-EAIEVFRQAGVLFAP 175 (254)
T ss_pred hhcCCCcEEEecc-----ccccC--CHHHHHHHHHcCCEEEEeCCCCCC-CH-HHHHHHHHCCcEEEC
Confidence 44 3699988664 33444 333344442 233 4555545444 44 567889999988874
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0013 Score=57.82 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=58.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHC----CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
+++|.||| ...+|+.++..|... +..|+++.... .++.+.+++|||||.++..+.- +
T Consensus 161 Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvGkp~~----i 222 (297)
T PRK14168 161 GAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAGVPNL----V 222 (297)
T ss_pred CCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecCCcCc----c
Confidence 89999999 578999999999987 67888875431 3677889999999999977442 3
Q ss_pred cccccccccCCCCCEEEEecC
Q 022909 146 CGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~ 166 (290)
. .+++++|+++||++.
T Consensus 223 --~---~~~ik~gavVIDvGi 238 (297)
T PRK14168 223 --K---PEWIKPGATVIDVGV 238 (297)
T ss_pred --C---HHHcCCCCEEEecCC
Confidence 1 456899999999964
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0033 Score=59.22 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=48.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~ 134 (290)
+++|.|||.|..|.+.|+.|...|++|.++|..+.....+.+.|+.......+-+.++|+||..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 6899999999999999999999999999999775544444455665432222335689988764
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00078 Score=60.87 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=53.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCC---eEEEE--eCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGC---DVTVW--NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~---~V~~~--d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
.++|+|+| .|.+|+.+.+.|...+| ++... .++..+........+...+...+.++++|+|++++|.. ....+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~~ 85 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKKF 85 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHHH
Confidence 68999999 59999999999998766 33322 23322221111111111111124458899999999874 34444
Q ss_pred hcccccccccCCCCCEEEEecC
Q 022909 145 ACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~ 166 (290)
. + ...+.|+.+||.|.
T Consensus 86 ~---~---~~~~~g~~VIDlS~ 101 (344)
T PLN02383 86 G---P---IAVDKGAVVVDNSS 101 (344)
T ss_pred H---H---HHHhCCCEEEECCc
Confidence 3 1 22346889999984
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0015 Score=57.32 Aligned_cols=73 Identities=32% Similarity=0.453 Sum_probs=58.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHC----CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
++++.|||- ..+|+.++..|... +..|+++.... .++.+..++|||||.+++.+.- +
T Consensus 157 GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGkp~~----i 218 (293)
T PRK14185 157 GKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQPEF----V 218 (293)
T ss_pred CCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCCcCc----c
Confidence 899999995 77899999999987 57888775432 3677889999999999987543 3
Q ss_pred cccccccccCCCCCEEEEecC
Q 022909 146 CGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~ 166 (290)
. .++.++|+++||++.
T Consensus 219 --~---~~~vk~gavVIDvGi 234 (293)
T PRK14185 219 --K---ADMVKEGAVVIDVGT 234 (293)
T ss_pred --C---HHHcCCCCEEEEecC
Confidence 1 356899999999964
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00078 Score=60.77 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=55.1
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCe---EEEEeCCccchhhHHhCC--CccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCD---VTVWNRTKSKCDPLISLG--AKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~---V~~~d~~~~~~~~~~~~g--~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
++|+|+| .|.+|+.+.+.|...+++ +....+..+..+.+.-.+ +...+...+.++++|+||.|+|.. ..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~~ 80 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKYA 80 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHHH
Confidence 6899999 599999999999997764 355544433222221111 222211123347899999999763 444443
Q ss_pred cccccccccCCCCCEEEEecC
Q 022909 146 CGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~ 166 (290)
-..++.|..+||.|.
T Consensus 81 ------~~~~~~G~~VIDlS~ 95 (334)
T PRK14874 81 ------PKAAAAGAVVIDNSS 95 (334)
T ss_pred ------HHHHhCCCEEEECCc
Confidence 123456889999875
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0041 Score=55.55 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=45.9
Q ss_pred CeEEEEcc-cHhHHHHHHHHHH---CCCeEEEEeCCccch---hhHHhCC--Ccc----CCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLK---AGCDVTVWNRTKSKC---DPLISLG--AKY----QPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~---~g~~V~~~d~~~~~~---~~~~~~g--~~~----~~~~~~~~~~aDivv~~~p~ 137 (290)
|||+|||+ |.+|++++..+.. .++++.++|+++... -.+.+.+ ... .+++.+.++++|+||++.-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 68999999 9999999988844 346899999875431 1122211 111 34556778999999998764
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0017 Score=58.13 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=64.8
Q ss_pred CeEEEEcccHhHHHHHHHHHH--------CCCeEE-EEeCCccc-------hhhH---HhCC-C--ccCC--CHHHHh-h
Q 022909 72 GRIGFLGMGIMGTPMAQNLLK--------AGCDVT-VWNRTKSK-------CDPL---ISLG-A--KYQP--SPDEVA-A 126 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~--------~g~~V~-~~d~~~~~-------~~~~---~~~g-~--~~~~--~~~~~~-~ 126 (290)
++|+|+|+|++|+.+++.|.. .+.+|. ++|++... .+.+ .+.+ + .... ++++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 479999999999999999976 244543 55665321 1111 1111 1 1112 456654 3
Q ss_pred cCCeEEEEeCChhH---HHHHhcccccccccCCCCCEEEEecCCChh-HHHHHHHHHHHcCCcEE
Q 022909 127 SCDVTFAMLADPES---AMDVACGKHGAASGMGPGKGYVDVSTVDGD-TSKLINGHIKATGASFL 187 (290)
Q Consensus 127 ~aDivv~~~p~~~~---~~~~~~~~~~~~~~~~~~~~lin~s~~~~~-~~~~l~~~l~~~~~~~~ 187 (290)
++|+||-+.|.... ....+ .+.++.|..+|-.+-+... ...+|.+..++++.++.
T Consensus 81 ~~DVvVE~t~~~~~g~~~~~~~------~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~ 139 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREKNLY------INAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIR 139 (326)
T ss_pred CCCEEEECCCCCCcCchHHHHH------HHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEE
Confidence 68999999975321 22222 4567788888865433322 34566677777776653
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0037 Score=59.83 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=48.9
Q ss_pred CCCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh---------CC------Ccc----C---CCHHHHhh
Q 022909 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS---------LG------AKY----Q---PSPDEVAA 126 (290)
Q Consensus 70 ~~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~---------~g------~~~----~---~~~~~~~~ 126 (290)
++++|.|.|. |.||+.+++.|.+.|++|.+++|+.++...+.+ .| +.. . +++.+++.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg 158 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG 158 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc
Confidence 4788999995 999999999999999999999999876544321 01 111 1 23444567
Q ss_pred cCCeEEEEeC
Q 022909 127 SCDVTFAMLA 136 (290)
Q Consensus 127 ~aDivv~~~p 136 (290)
++|+||.+..
T Consensus 159 giDiVVn~AG 168 (576)
T PLN03209 159 NASVVICCIG 168 (576)
T ss_pred CCCEEEEccc
Confidence 8999988764
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.022 Score=47.62 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=46.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCC-CccC--CCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLG-AKYQ--PSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g-~~~~--~~~~~~~~~aDivv~~~p~ 137 (290)
+++|.|||.|.+|..-++.|...|.+|+++++.... ...+.+.+ +... .-..+.+.++|+|+.++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d 79 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDD 79 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCC
Confidence 799999999999999999999999999999987542 22333322 2211 1113345677877777544
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0009 Score=59.84 Aligned_cols=66 Identities=26% Similarity=0.328 Sum_probs=48.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhh-HHhCCCc-cCC---CHHHHhhcCCeE---EEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-LISLGAK-YQP---SPDEVAASCDVT---FAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~-~~~~g~~-~~~---~~~~~~~~aDiv---v~~~p~ 137 (290)
++|||||-|..|+.++......|++|++.|++++.... .++..+. ..+ .+.++++.||+| +.++|.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~ 75 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPA 75 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCH
Confidence 78999999999999999999999999999998765332 2221111 112 467788899999 445554
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00088 Score=59.85 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=49.0
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc-------CCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivv~~~p 136 (290)
|+|.|.| +|.+|+.+++.|...|++|.+.+|++++...+...++.. ..++.++++++|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5799999 599999999999999999999999876544333333321 2345677889999887653
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.002 Score=53.58 Aligned_cols=114 Identities=20% Similarity=0.228 Sum_probs=63.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CCCccCCCHHHHhh--cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVAA--SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~aDivv~~~p~~~ 139 (290)
..+|.|+|+|.+|..+++.|...|. +++++|.+.-....+.. .|-..+....+.++ +.|+-+...+..-
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~ 100 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI 100 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCc
Confidence 7999999999999999999999997 69999976432222111 11111111111121 2444444332211
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
. .. ..+. ++.-.++|++ .........+.+...+.++.++.+...+
T Consensus 101 ~--~~---~~~~---~~~~dvVi~~-~~~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 101 S--EK---PEEF---FSQFDVVVAT-ELSRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred c--cc---HHHH---HhCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 1 10 0111 2233466665 3345555667777788888887765544
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0018 Score=56.91 Aligned_cols=73 Identities=25% Similarity=0.362 Sum_probs=58.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHC----CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
++++.|||- ..+|+.++..|... +..|+++.... .++.+..++|||||.++..+. ++
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGkp~----~i 218 (297)
T PRK14167 157 GADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGVPE----LI 218 (297)
T ss_pred CCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC----cc
Confidence 899999995 77899999999876 78898875322 367788999999999997754 33
Q ss_pred cccccccccCCCCCEEEEecC
Q 022909 146 CGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~ 166 (290)
. .+++++|+++||++-
T Consensus 219 --~---~~~ik~gaiVIDvGi 234 (297)
T PRK14167 219 --D---GSMLSEGATVIDVGI 234 (297)
T ss_pred --C---HHHcCCCCEEEEccc
Confidence 1 356899999999963
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0015 Score=56.17 Aligned_cols=110 Identities=18% Similarity=0.278 Sum_probs=66.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEE--------eCCccchhhHHh----CCC--ccCC----------CHH-HHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVW--------NRTKSKCDPLIS----LGA--KYQP----------SPD-EVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~--------d~~~~~~~~~~~----~g~--~~~~----------~~~-~~~ 125 (290)
++++.|-|+|++|..+|+.|...|.+|.+. |+..-+.+.+.+ .+. .... +.+ +++
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il 111 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEIL 111 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccccc
Confidence 799999999999999999999999887654 554433333332 222 1111 121 555
Q ss_pred -hcCCeEEEEeCChhHHHHHhcccccccc-cCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 126 -ASCDVTFAMLADPESAMDVACGKHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 126 -~~aDivv~~~p~~~~~~~~~~~~~~~~~-~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.+|||++-|--. +.+ +++..+ .+++++-+|--+...+.+.++.. .|.++|+.++.
T Consensus 112 ~~~~DiliP~A~~-----~~I--~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~viP 168 (244)
T PF00208_consen 112 SVDCDILIPCALG-----NVI--NEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGILVIP 168 (244)
T ss_dssp TSSSSEEEEESSS-----TSB--SCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-EEE-
T ss_pred cccccEEEEcCCC-----Cee--CHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCEEEc
Confidence 479999988433 233 333344 55555555444444444454444 88899887763
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0023 Score=57.45 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=46.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCCccc--hhh----HHh------CCCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LIS------LGAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~~~~--~~~----~~~------~g~~~~~~~~~~~~~aDi 130 (290)
++||+|||+ |.+|..+|-.+...|. ++.++|.++.. ++. +.+ .......+..+.+++||+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDi 83 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADV 83 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCE
Confidence 689999998 9999999998876553 79999985431 211 111 012233455577899999
Q ss_pred EEEEeC
Q 022909 131 TFAMLA 136 (290)
Q Consensus 131 vv~~~p 136 (290)
||++.-
T Consensus 84 VVitaG 89 (326)
T PRK05442 84 ALLVGA 89 (326)
T ss_pred EEEeCC
Confidence 998765
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0021 Score=56.57 Aligned_cols=73 Identities=23% Similarity=0.390 Sum_probs=57.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHH----CCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLK----AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~----~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
++++.|||- ..+|+.++..|.. .+..|+.+..+. .++.+.+++||+||.+++.+ +++
T Consensus 159 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~----~li 220 (295)
T PRK14174 159 GKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKA----RFI 220 (295)
T ss_pred CCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCcc----Ccc
Confidence 899999995 7789999999987 578888776542 25778899999999999764 334
Q ss_pred cccccccccCCCCCEEEEecC
Q 022909 146 CGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~ 166 (290)
. .+++++|+++||++-
T Consensus 221 --~---~~~vk~GavVIDVgi 236 (295)
T PRK14174 221 --T---ADMVKPGAVVIDVGI 236 (295)
T ss_pred --C---HHHcCCCCEEEEeec
Confidence 2 345699999999963
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0021 Score=61.50 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=71.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-CCc--cCCCHHHHh-hcCCeEEEEeCChhH--HHH-
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAK--YQPSPDEVA-ASCDVTFAMLADPES--AMD- 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~--~~~~~~~~~-~~aDivv~~~p~~~~--~~~- 143 (290)
++++.|+|.|.+|++++..|...|++|.+++|+.++.+.+.+. +.. ...+..+.. ..+|+|+.++|.... ...
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~ 458 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDET 458 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCCCC
Confidence 6889999999999999999999999999999998877766542 211 112222222 356888888775321 110
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
-+ + ...+++..+++|+.-.+.. -.+.+..++.|...++
T Consensus 459 pl--~---~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~ 496 (529)
T PLN02520 459 PI--S---KHALKHYSLVFDAVYTPKI--TRLLREAEESGAIIVS 496 (529)
T ss_pred cc--c---HhhCCCCCEEEEeccCCCc--CHHHHHHHHCCCeEeC
Confidence 11 1 2346677888888654433 2455666666655543
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=57.79 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=53.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+.+|+||| .|..|+.+.+.|..+.. ++.....+..+ . . .+.++.++++|++++|+|... ...+.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--~-----~---~~~~~~~~~~DvvFlalp~~~-s~~~~--- 67 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--D-----A---AARRELLNAADVAILCLPDDA-AREAV--- 67 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--c-----c---cCchhhhcCCCEEEECCCHHH-HHHHH---
Confidence 68999999 69999999999988763 44433332221 1 1 233456678999999998743 33333
Q ss_pred ccccccCCCCCEEEEecC
Q 022909 149 HGAASGMGPGKGYVDVST 166 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~ 166 (290)
+ ...+.|..+||.|.
T Consensus 68 ~---~~~~~g~~VIDlSa 82 (313)
T PRK11863 68 A---LIDNPATRVIDAST 82 (313)
T ss_pred H---HHHhCCCEEEECCh
Confidence 1 12346889999984
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.002 Score=56.40 Aligned_cols=73 Identities=29% Similarity=0.393 Sum_probs=58.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHH----CCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLK----AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~----~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
++++.|||- ..+|+.++..|.. .+..|+.+..+. .++.+.+++||+||.+++.+. ++
T Consensus 157 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~p~----li 218 (286)
T PRK14184 157 GKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGRPR----FV 218 (286)
T ss_pred CCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCC----cC
Confidence 899999994 7789999999998 678888877432 267788999999999997643 23
Q ss_pred cccccccccCCCCCEEEEecC
Q 022909 146 CGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~ 166 (290)
. .+++++|+++||++-
T Consensus 219 --~---~~~vk~GavVIDVGi 234 (286)
T PRK14184 219 --T---ADMVKPGAVVVDVGI 234 (286)
T ss_pred --C---HHHcCCCCEEEEeee
Confidence 1 245699999999963
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.012 Score=55.16 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=32.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
+++|.|+|.|.+|.++|+.|...|++|.++|.++.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 68999999999999999999999999999997654
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0012 Score=59.46 Aligned_cols=88 Identities=16% Similarity=0.228 Sum_probs=51.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCe---EEEEeCCccchhhHHhCC--CccC-CCHHHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCD---VTVWNRTKSKCDPLISLG--AKYQ-PSPDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~---V~~~d~~~~~~~~~~~~g--~~~~-~~~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
+++|+|+|+ |.+|+.+.+.|...+++ +.........-+.+...+ ..+. .+.++ ++++|++++++|. .....
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~-~~s~~ 81 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGA-AVSRS 81 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCH-HHHHH
Confidence 479999995 99999999999976653 333322211111111111 1111 12223 5789999999985 33344
Q ss_pred HhcccccccccCCCCCEEEEecC
Q 022909 144 VACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+. + ...+.|..+||.|.
T Consensus 82 ~v---~---~~~~~G~~VIDlS~ 98 (336)
T PRK05671 82 FA---E---KARAAGCSVIDLSG 98 (336)
T ss_pred HH---H---HHHHCCCeEEECch
Confidence 43 1 12346888999974
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0041 Score=57.80 Aligned_cols=123 Identities=23% Similarity=0.214 Sum_probs=72.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccch----hhHHhCCCccCC--CHHHHhhcCCeEEEEeC---ChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKYQP--SPDEVAASCDVTFAMLA---DPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~----~~~~~~g~~~~~--~~~~~~~~aDivv~~~p---~~~~~ 141 (290)
+++|.|+|+|.-|.++++.|.+.|++|+++|.++... ......++.+.. ..++...++|+||..-- ..+.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v 86 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLV 86 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHH
Confidence 7999999999999999999999999999999776551 111123433221 12245678999988622 11222
Q ss_pred HHHhcccc------cccccC-CCCCEE-EEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 142 MDVACGKH------GAASGM-GPGKGY-VDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 142 ~~~~~~~~------~~~~~~-~~~~~l-in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
........ +++-.. .+..+| |-=|.|..-++.-+...|++.|....-+.++|
T Consensus 87 ~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG 146 (448)
T COG0771 87 EAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIG 146 (448)
T ss_pred HHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccC
Confidence 22211111 122222 233343 33345666666677777877776544444433
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0022 Score=57.52 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=47.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCCccc--hhh----HHhC------CCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LISL------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~~~~--~~~----~~~~------g~~~~~~~~~~~~~aDi 130 (290)
.+||+|||+ |.+|..+|..+...|. ++.++|.++.. ++. +.+. .+....+..+.+++||+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 579999999 9999999999987765 79999985432 211 1110 12233455677899999
Q ss_pred EEEEeCC
Q 022909 131 TFAMLAD 137 (290)
Q Consensus 131 vv~~~p~ 137 (290)
||++.-.
T Consensus 82 vvitaG~ 88 (322)
T cd01338 82 ALLVGAK 88 (322)
T ss_pred EEEeCCC
Confidence 9998654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0019 Score=55.03 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=31.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|+|+|.+|..+++.|...|. +++++|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 7899999999999999999999997 788998764
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0052 Score=58.24 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=31.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
+++|.|||.|.+|..+|+.|...|++|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6899999999999999999999999999999764
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0052 Score=52.67 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=71.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCC-CeE-EEEeCCccch-----hhHH---hCCCccCCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAG-CDV-TVWNRTKSKC-----DPLI---SLGAKYQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g-~~V-~~~d~~~~~~-----~~~~---~~g~~~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
++||+|+|+ |+||+.+.+.+.... +++ -.+++.+... .++. ..++...+++.....++|++|=-. .|.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT-~P~ 80 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT-TPE 80 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC-Cch
Confidence 589999997 999999999998764 554 4677765422 1111 134555666777778899987554 445
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
.+...+ . +..-.+-..+|-++.-+....+.+.++.++ +..+-+|+|.
T Consensus 81 ~~~~~l--~---~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfS 127 (266)
T COG0289 81 ATLENL--E---FALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFS 127 (266)
T ss_pred hhHHHH--H---HHHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEeccch
Confidence 555554 1 111122345666655555555566655554 6666666653
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0043 Score=55.63 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=47.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCCc--cchhhHH----hC------CCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTK--SKCDPLI----SL------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~~--~~~~~~~----~~------g~~~~~~~~~~~~~aDi 130 (290)
..||+|||+ |.+|..+|..|...|. ++.++|.++ ++++..+ +. +.....+..+.+++||+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 578999998 9999999999987774 799999964 2222111 10 12222355677899999
Q ss_pred EEEEeCC
Q 022909 131 TFAMLAD 137 (290)
Q Consensus 131 vv~~~p~ 137 (290)
||++.-.
T Consensus 83 VVitAG~ 89 (323)
T TIGR01759 83 ALLVGAF 89 (323)
T ss_pred EEEeCCC
Confidence 9998654
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0019 Score=57.82 Aligned_cols=67 Identities=9% Similarity=0.159 Sum_probs=47.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC--eEEEEeCCccchh--hHHhC----CCc---cCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLISL----GAK---YQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~--~V~~~d~~~~~~~--~~~~~----g~~---~~~~~~~~~~~aDivv~~~p~ 137 (290)
..||+|||+ |++|..++..|...+. ++.++|+++.+.+ ++.+. .+. ..+++.+.++++|+||++.-.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 579999999 9999999999986664 8999998772221 11110 111 123456789999999998653
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0022 Score=51.29 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=46.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC-CccC-CC-HHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG-AKYQ-PS-PDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g-~~~~-~~-~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
+++|.|||.|.+|...++.|...|++|+++++. ..+++.+.+ +... .. .++-++++|+|+.++.. +++...+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d-~e~N~~i 87 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQ-HAVNMMV 87 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhccCcEEEecccChhcCCCceEEEECCCC-HHHHHHH
Confidence 899999999999999999999999999999643 334443321 1110 01 11224667777776533 4444443
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.01 Score=55.70 Aligned_cols=65 Identities=25% Similarity=0.248 Sum_probs=47.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccch----hhHHhCCCccC--CCHHHHhhc-CCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKYQ--PSPDEVAAS-CDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~----~~~~~~g~~~~--~~~~~~~~~-aDivv~~~ 135 (290)
+++|.|+|.|.+|.+.|+.|+..|++|.++|++.... +.+.+.|+... ....+++.. .|+||...
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 6899999999999999999999999999999865321 33444565432 233444454 89887754
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0013 Score=58.46 Aligned_cols=65 Identities=12% Similarity=0.231 Sum_probs=46.2
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHH----h-C------CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----S-L------GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~----~-~------g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
||+|||+|.+|..+|..+...+. ++.++|.++++.+... . . .+....+..+.+++||+||++.-.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 69999999999999999988775 7999999876543221 1 0 111111224668999999997653
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0027 Score=56.49 Aligned_cols=99 Identities=17% Similarity=0.302 Sum_probs=60.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhC-----CC---cc-CCCHHHH-hhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-----GA---KY-QPSPDEV-AASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~-----g~---~~-~~~~~~~-~~~aDivv~~~p~~ 138 (290)
++||+|+|. |.-|..+.+.|..+. .++..+..+..+-+.+.+. |. .. ..+.+++ .++||+||+|+|..
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg 81 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHG 81 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCch
Confidence 589999995 999999999998874 4776666544232333331 11 11 1123333 44589999999975
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHH
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLIN 176 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~ 176 (290)
.. ..+. -..+.++..|||+|.---....+++
T Consensus 82 ~s-~~~v------~~l~~~g~~VIDLSadfR~~d~~~y 112 (349)
T COG0002 82 VS-AELV------PELLEAGCKVIDLSADFRLKDPEVY 112 (349)
T ss_pred hH-HHHH------HHHHhCCCeEEECCcccccCCHHHH
Confidence 44 3333 1223456679999865544433333
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0024 Score=52.05 Aligned_cols=32 Identities=22% Similarity=0.463 Sum_probs=29.4
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
+|+|||+|.+|..+++.|...|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999998 599999875
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0035 Score=57.83 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=66.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCC----------ccchhhHHh-C-------CCccCCCHHHH-hhcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLIS-L-------GAKYQPSPDEV-AASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~----------~~~~~~~~~-~-------g~~~~~~~~~~-~~~aDi 130 (290)
+++|+|.|+|++|+.+|+.|...|.+|+ +.|.+ .+.+.+.++ . +.... +.+++ ..+|||
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dv 284 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDV 284 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccE
Confidence 7999999999999999999999999988 66665 222212111 1 11222 22333 347999
Q ss_pred EEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++-|-- .+.| +++..+.++ -.+|+-.+++.. +.+-.+.|.++|+.++.
T Consensus 285 liP~Al-----~~~I--~~~na~~i~-ak~I~egAN~p~--t~ea~~~L~~rGI~~~P 332 (410)
T PLN02477 285 LIPAAL-----GGVI--NKENAADVK-AKFIVEAANHPT--DPEADEILRKKGVVVLP 332 (410)
T ss_pred Eeeccc-----cccC--CHhHHHHcC-CcEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 886642 3344 333344443 345565555555 34556888999988874
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0029 Score=56.29 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=58.1
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCC--eEEEEeCCccchh--hHHhC----CCcc--C-CCHHHHhhcCCeEEEEeCChh
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLISL----GAKY--Q-PSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~--~V~~~d~~~~~~~--~~~~~----g~~~--~-~~~~~~~~~aDivv~~~p~~~ 139 (290)
+||+|||+ |++|..+|-.+...+. ++.++|++..+.+ .+.+. .+.. . +++.+.+++||+|+++.-.+.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 58999999 9999999999988774 7999998721111 12221 1221 1 233567899999999875431
Q ss_pred ---HHH-HHhccccc-------ccccCCCCCEEEEecC
Q 022909 140 ---SAM-DVACGKHG-------AASGMGPGKGYVDVST 166 (290)
Q Consensus 140 ---~~~-~~~~~~~~-------~~~~~~~~~~lin~s~ 166 (290)
+++ .++..|.+ .+....|++++|++|+
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN 118 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 111 22211111 1222357889998855
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0028 Score=54.93 Aligned_cols=74 Identities=24% Similarity=0.364 Sum_probs=60.0
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||-++ +|+.++..|...++.|+++.... .++.+..+++|||+.++-.+ +++ .
T Consensus 156 Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p----~~i--~- 214 (283)
T COG0190 156 GKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKP----HFI--K- 214 (283)
T ss_pred CCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCc----ccc--c-
Confidence 89999999765 69999999999999999987543 26677889999999999663 333 1
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.++.++|+++||++..
T Consensus 215 --~d~vk~gavVIDVGin 230 (283)
T COG0190 215 --ADMVKPGAVVIDVGIN 230 (283)
T ss_pred --cccccCCCEEEecCCc
Confidence 4678999999998643
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0025 Score=56.76 Aligned_cols=94 Identities=16% Similarity=0.218 Sum_probs=57.5
Q ss_pred eEEEEcc-cHhHHHHHHHHHHCCC--eEEEEeCCccchhh--HHhC----CCcc-C-C-CHHHHhhcCCeEEEEeCChh-
Q 022909 73 RIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP--LISL----GAKY-Q-P-SPDEVAASCDVTFAMLADPE- 139 (290)
Q Consensus 73 ~IgiiG~-G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~--~~~~----g~~~-~-~-~~~~~~~~aDivv~~~p~~~- 139 (290)
||+|||+ |++|..+|-.|...+. ++.++|+++...+. +.+. .+.. . + ++.+.++++|+|+++...+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 6999999 9999999999987775 79999987622111 1110 1111 1 1 23578899999999875421
Q ss_pred --HH-HHHhccccc-------ccccCCCCCEEEEecC
Q 022909 140 --SA-MDVACGKHG-------AASGMGPGKGYVDVST 166 (290)
Q Consensus 140 --~~-~~~~~~~~~-------~~~~~~~~~~lin~s~ 166 (290)
.+ ..++..+.+ .+....|++++|++|+
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 11 111111111 1222357888888854
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0044 Score=55.95 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=59.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-----CCHHHHhh---cCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA---SCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~---~aDivv~~~p~~~~~ 141 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|...+ .+..+..+ ..|+|+-++..+...
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~~ 249 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSI 249 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHHH
Confidence 6899999999999999999999998 68899999888777777665322 12223222 257777666443222
Q ss_pred HHHhcccccccccCCCCCEEEEec
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
... ++.++++..++.++
T Consensus 250 ~~~-------~~~l~~~G~iv~~G 266 (343)
T PRK09880 250 NTC-------LEVTRAKGVMVQVG 266 (343)
T ss_pred HHH-------HHHhhcCCEEEEEc
Confidence 222 34566666666664
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0032 Score=56.83 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=31.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|||+|.+|..++..|+..|. ++.++|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 6899999999999999999999998 899999864
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0022 Score=54.72 Aligned_cols=109 Identities=13% Similarity=0.123 Sum_probs=78.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC---CeEEEEeCCccchhhHHhC----------CCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLISL----------GAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g---~~V~~~d~~~~~~~~~~~~----------g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
.-..|+|.|..+-.+.....+.- .+|.+|+|+++....+++. .+..+.+++++++.+|||+.+++.+
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atlst 218 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLST 218 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccccC
Confidence 56889999999998888766543 3899999999887776651 2345678999999999999988654
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~ 189 (290)
+.++ ..++++||+++=-+++-.+. ..+..+.+-+.+..|||.
T Consensus 219 ---ePil-----fgewlkpgthIdlVGsf~p~-mhEcDdelIq~a~vfVDs 260 (333)
T KOG3007|consen 219 ---EPIL-----FGEWLKPGTHIDLVGSFKPV-MHECDDELIQSACVFVDS 260 (333)
T ss_pred ---Ccee-----eeeeecCCceEeeeccCCch-HHHHhHHHhhhheEEEec
Confidence 4555 25789999886555554554 445555555556677774
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0035 Score=54.28 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=38.9
Q ss_pred CCCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 70 ~~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
+++++.|-|+ +.||..+|+.|++.|++|++..|+.++.+++++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~ 48 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAK 48 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH
Confidence 3689999995 999999999999999999999999998887765
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0043 Score=53.44 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=62.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CCCccCCCHHHHhh--cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVAA--SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~aDivv~~~p~~~ 139 (290)
..+|+|||+|.+|..+++.|+..|. +++++|.+.-....+.. .|...+....+.++ ..++-+.+.+..-
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i 111 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARL 111 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 7999999999999999999999997 78899876433222211 12222222222222 2334333333211
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCcc
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 191 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~ 191 (290)
.... + .+.++.-.++|+++. .......+.+...+.++.++.+.+
T Consensus 112 ~~~~-~------~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~ip~v~~~~ 155 (245)
T PRK05690 112 DDDE-L------AALIAGHDLVLDCTD-NVATRNQLNRACFAAKKPLVSGAA 155 (245)
T ss_pred CHHH-H------HHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCCEEEEeee
Confidence 1111 1 112334457777743 344444566667777787776543
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0017 Score=47.46 Aligned_cols=73 Identities=22% Similarity=0.247 Sum_probs=51.9
Q ss_pred CCeEEEEcccHhHHHHHHHHH-HCCCe-EEEEeCCccchhhHHhCCCccCCCHHHHhhc--CCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL-KAGCD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~-~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivv~~~p~~~~~~~~~ 145 (290)
..+++|+|+|+.|++++.... ..|+. +.++|.++++.... -.|+....+++++.+. .|+-++++|... .....
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~-i~gipV~~~~~~l~~~~~i~iaii~VP~~~-a~~~~ 79 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKE-IGGIPVYGSMDELEEFIEIDIAIITVPAEA-AQEVA 79 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSE-ETTEEEESSHHHHHHHCTTSEEEEES-HHH-HHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcE-ECCEEeeccHHHhhhhhCCCEEEEEcCHHH-HHHHH
Confidence 578999999999999985443 45765 46888888765321 1356666688888777 999999998643 44444
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0067 Score=57.44 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=48.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-HhCCCccCC--CHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQP--SPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~~--~~~~~~~~aDivv~~ 134 (290)
+++|.|+|+|..|.++++.|...|++|.++|++.....++ .+.|+.... ...+.+.++|+||..
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence 6889999999999999999999999999999876544332 334665432 233456788988875
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0086 Score=46.50 Aligned_cols=111 Identities=19% Similarity=0.220 Sum_probs=63.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CCCccCCCHHHHh----hcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVA----ASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~----~~aDivv~~~p~ 137 (290)
.+||.|+|+|.+|..+++.|...|. +++++|.+.=....+.. .|...+.-+.+.+ ...++.....+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 81 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI 81 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence 5899999999999999999999998 79999986432222211 1222221222222 234444333322
Q ss_pred h-hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccC
Q 022909 138 P-ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192 (290)
Q Consensus 138 ~-~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~ 192 (290)
+ ...... + ++-.++|++. ........+.+.+.+.++.++...+.
T Consensus 82 ~~~~~~~~-------~---~~~d~vi~~~-d~~~~~~~l~~~~~~~~~p~i~~~~~ 126 (135)
T PF00899_consen 82 DEENIEEL-------L---KDYDIVIDCV-DSLAARLLLNEICREYGIPFIDAGVN 126 (135)
T ss_dssp SHHHHHHH-------H---HTSSEEEEES-SSHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred cccccccc-------c---cCCCEEEEec-CCHHHHHHHHHHHHHcCCCEEEEEee
Confidence 1 112222 2 2335777763 34555667788888888888876544
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0048 Score=54.04 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=38.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhCCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAK 116 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~ 116 (290)
+.+|.|+|.|.+|...++.++..|.+ |++.++++++.+.+++.|..
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 67999999999999999999999986 88888888777666666653
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00067 Score=61.95 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=30.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~ 103 (290)
..+|.|||+|.+|..+++.|...|. +++++|.+
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 7899999999999999999999997 88999876
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0026 Score=53.55 Aligned_cols=33 Identities=21% Similarity=0.493 Sum_probs=30.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~ 103 (290)
..+|+|||+|.+|..+++.|...|. +++++|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 6899999999999999999999998 59999987
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.002 Score=54.79 Aligned_cols=64 Identities=28% Similarity=0.345 Sum_probs=50.6
Q ss_pred EEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccc--hhhHHhCCCcc-------CCCHHHHhhcCCeEEEEeCC
Q 022909 74 IGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAKY-------QPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 74 IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~--~~~~~~~g~~~-------~~~~~~~~~~aDivv~~~p~ 137 (290)
|.|+|. |.+|+.+++.|...+++|.+..|++.+ .+.+.+.|+.. .+++.++++++|.|++++|.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 689995 999999999999999999999998743 34455555542 23566678999999999984
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0051 Score=55.77 Aligned_cols=88 Identities=30% Similarity=0.360 Sum_probs=58.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeC---CccchhhHHhCCCccCCC----HHH--HhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR---TKSKCDPLISLGAKYQPS----PDE--VAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~---~~~~~~~~~~~g~~~~~~----~~~--~~~~aDivv~~~p~~~~~ 141 (290)
+.+|.|+|+|.+|...++.++..|.+|+++++ ++++.+.+++.|+..... ..+ .....|+|+-++..+...
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 252 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPLA 252 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHHH
Confidence 68999999999999999999999999999998 455656555666543321 111 122467777777543322
Q ss_pred HHHhcccccccccCCCCCEEEEec
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
.. .++.++++..++.++
T Consensus 253 ~~-------~~~~l~~~G~~v~~G 269 (355)
T cd08230 253 FE-------ALPALAPNGVVILFG 269 (355)
T ss_pred HH-------HHHHccCCcEEEEEe
Confidence 22 245566766666554
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0081 Score=56.35 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=51.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--CCccC----CCHHH----HhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKYQ----PSPDE----VAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--g~~~~----~~~~~----~~~~aDivv~~~p~~ 138 (290)
.++|.|+|+|.+|+.+++.|...|++|+++|+++++.+.+.+. +.... .+.+. -++++|.|+++++.+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 5889999999999999999999999999999999887776653 33211 22222 235789998887654
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.005 Score=52.83 Aligned_cols=115 Identities=15% Similarity=0.192 Sum_probs=65.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CCCccCCCHHHHhh--cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVAA--SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~aDivv~~~p~~~ 139 (290)
..+|.|+|+|.+|..+++.|...|. +++++|.+.-....+.. .|...+....+.++ ..++-+.+.+..-
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i 103 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKL 103 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccC
Confidence 6899999999999999999999997 78899886433222211 12111211222222 2344444443211
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
.... + .+.++.-.++|+++ ........+.+...+.++.++.....+
T Consensus 104 ~~~~-~------~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 104 DDAE-L------AALIAEHDIVVDCT-DNVEVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred CHHH-H------HHHhhcCCEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1111 1 12234455777774 334445567777777888887754443
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.12 Score=46.98 Aligned_cols=202 Identities=14% Similarity=0.150 Sum_probs=115.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh----C-----------------CC----ccCCCHHHHh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS----L-----------------GA----KYQPSPDEVA 125 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~----~-----------------g~----~~~~~~~~~~ 125 (290)
.+|.|+|+|..+-.+|..+...+. +|-+++|...+.+.+.+ . |- ....+.+++.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 579999999999999999997764 79999997665544432 1 10 1235677777
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecC--CChhHHHHHHHHHHHcCCcEEe-CccCC------CCc
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST--VDGDTSKLINGHIKATGASFLE-APVSG------SKK 196 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~--~~~~~~~~l~~~l~~~~~~~~~-~p~~~------~~~ 196 (290)
.+=|.+|+|||. ++...++.. =-.+.++.=+.+|-+|. |+....+.+...+.. .+.+++ ...++ ++.
T Consensus 82 g~WdtlILavta-DAY~~VL~q--l~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~-~~EVISFStY~gdTr~~d~~~ 157 (429)
T PF10100_consen 82 GEWDTLILAVTA-DAYLDVLQQ--LPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGP-DAEVISFSTYYGDTRWSDGEQ 157 (429)
T ss_pred ccccEEEEEech-HHHHHHHHh--cCHHHHhhCCEEEEECcccchHHHHHHHHHhcCC-CceEEEeecccccceeccCCC
Confidence 788999999987 555566521 01122333334444443 333333333332221 233333 11111 111
Q ss_pred c------ccCCceEEEec-CCHHHHHHHHHHHHHhCCcEEEeCCcchHHH-----------------HHHHH--------
Q 022909 197 P------AEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAA-----------------MKLVV-------- 244 (290)
Q Consensus 197 ~------~~~~~~~~~~~-~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~-----------------~k~~~-------- 244 (290)
. +.+..+.+-.. ++...++++..+++.+|..+..++.+-.|+. ++.+.
T Consensus 158 ~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kY 237 (429)
T PF10100_consen 158 PNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKY 237 (429)
T ss_pred cceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcce
Confidence 1 11122221111 2346788999999999988777654333322 11110
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhh
Q 022909 245 ------------NMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQS 277 (290)
Q Consensus 245 ------------n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~ 277 (290)
..++.+...+.|.+.+..+.|++.=.+.+++.+
T Consensus 238 vYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~d 282 (429)
T PF10100_consen 238 VYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMND 282 (429)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhcc
Confidence 222333377889999999999998777777654
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0049 Score=56.00 Aligned_cols=89 Identities=22% Similarity=0.296 Sum_probs=62.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh-CCCccCCCH-H--------HHh--hcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-LGAKYQPSP-D--------EVA--ASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~-~g~~~~~~~-~--------~~~--~~aDivv~~~p~~ 138 (290)
.++.|+|+|.||...+..++..|. +|++.|+++++++.+++ .+.....+. + ++. ..+|+++.|+...
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~ 249 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSP 249 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence 389999999999999998888985 78888999999887777 444322221 1 112 2489999998743
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
..... .++..+++..++.++-.
T Consensus 250 ~~~~~-------ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 250 PALDQ-------ALEALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHH-------HHHHhcCCCEEEEEecc
Confidence 32222 35667788777777544
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0042 Score=54.41 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=45.8
Q ss_pred eEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH----HhCCCccCCCHHHHh------hc-CCeEEEEeCC
Q 022909 73 RIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL----ISLGAKYQPSPDEVA------AS-CDVTFAMLAD 137 (290)
Q Consensus 73 ~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~----~~~g~~~~~~~~~~~------~~-aDivv~~~p~ 137 (290)
+|.|+|. |.+|+.+++.|...|++|.+..|++++.... ......-.+++.+++ +. +|.|+++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 4789986 9999999999999999999999998654211 001111223455566 45 8999888764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.022 Score=47.76 Aligned_cols=73 Identities=25% Similarity=0.260 Sum_probs=51.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc-cchhhHHhC-CCcc---CCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK-SKCDPLISL-GAKY---QPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~-~~~~~~~~~-g~~~---~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
+++|.|||.|.+|..=++.|...|.+|+++.+.. +....+.+. ++.. .-+.++ +..+++|+.+++.+...+.+
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~ln~~i 89 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEELNERI 89 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHHHHHHH
Confidence 8999999999999999999999999999999876 223333332 2111 123333 44599999998765443333
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0036 Score=59.06 Aligned_cols=114 Identities=23% Similarity=0.235 Sum_probs=68.6
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccC-CCHHHHhhcCCeEEEEeC--C-hhHHHHH
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQ-PSPDEVAASCDVTFAMLA--D-PESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~-~~~~~~~~~aDivv~~~p--~-~~~~~~~ 144 (290)
+++|.|+|.|..|.+ +|+.|...|++|.++|.++.. .+.+.+.|+... ....+.+.++|+||+.-. . .+..+..
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a 86 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAA 86 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHH
Confidence 689999999999999 799999999999999976532 234555566543 223345678998887532 2 2223221
Q ss_pred hc------cccccccc-CCCCCEE-EEecCCChhHHHHHHHHHHHcCC
Q 022909 145 AC------GKHGAASG-MGPGKGY-VDVSTVDGDTSKLINGHIKATGA 184 (290)
Q Consensus 145 ~~------~~~~~~~~-~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~ 184 (290)
.. ...+++.. +++..++ |-=|.|...++.-+...|+..|.
T Consensus 87 ~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 87 RELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred HHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 10 11122222 2333343 33335556666666677776653
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0045 Score=54.95 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=44.5
Q ss_pred EEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh----------CCCccCCCHHHHhhcCCeEEEEeCC
Q 022909 76 FLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS----------LGAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 76 iiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~----------~g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
|||+|.+|..+|..+...+. ++.++|++.++.+..+. .......+..+.+++||+||++.-.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA 74 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence 68999999999999988775 79999998765433221 0122223345678999999997653
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.013 Score=51.74 Aligned_cols=109 Identities=10% Similarity=0.037 Sum_probs=71.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHH---HHHhc-
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA---MDVAC- 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~---~~~~~- 146 (290)
+++++|||--.==..+++.|...|++|.++.-.... ..+ .|+....+.++.++++|+|++.+|.+.+- +..+.
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~ 77 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-DGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN 77 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-ccc--ccceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence 378999999888899999999999999988753210 111 24666667777799999999999954331 11110
Q ss_pred ----ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 147 ----GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 147 ----~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
-+++.++.++++.++ -++. +...+.+..+++++.+.
T Consensus 78 ~~~~l~~~~l~~~~~~~~~-~~G~----~~~~l~~~a~~~gi~v~ 117 (287)
T TIGR02853 78 EKVVLTPELLESTKGHCTI-YVGI----SNPYLEQLAADAGVKLI 117 (287)
T ss_pred CCccccHHHHHhcCCCCEE-EEec----CCHHHHHHHHHCCCeEE
Confidence 024556777776553 2222 22344456777888777
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.012 Score=49.65 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=33.9
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
||+.|.|. |.||+++++.|...|++|.+.+|++++.+...
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~ 41 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAA 41 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36888885 99999999999999999999999877665443
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0018 Score=52.43 Aligned_cols=68 Identities=10% Similarity=0.211 Sum_probs=47.3
Q ss_pred CCeEEEEcccHhHHHHHHHH--HHCCCeE-EEEeCCccchhhHHh-CCCccCCCHHHHhh--cCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNL--LKAGCDV-TVWNRTKSKCDPLIS-LGAKYQPSPDEVAA--SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l--~~~g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~--~aDivv~~~p~~ 138 (290)
..++.|||+|++|++++..- ...|+++ .++|.+++....... ..+.-.+++++.++ +.|+.++|+|..
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~ 157 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE 157 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH
Confidence 46899999999999999873 3567875 488998875432211 12333456667776 578889998863
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0079 Score=53.48 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=52.6
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCC--e-EE--EEeCCccch-hhHHhCCCccCC--CHHHHhhcCCeEEEEeCChhHHH
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGC--D-VT--VWNRTKSKC-DPLISLGAKYQP--SPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~--~-V~--~~d~~~~~~-~~~~~~g~~~~~--~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
++|||+| .|.+|+.+.++|..... + +. ...|+..+. ..+....+..-+ .-....+++|+++.+.+.... +
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s-~ 80 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVS-K 80 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHH-H
Confidence 7899998 59999999999998543 2 33 333443322 222222122221 112235689999999876433 4
Q ss_pred HHhcccccccccCCCCCEEEEecC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.+. -...+.|.++||.++
T Consensus 81 ~~~------p~~~~~G~~VIdnsS 98 (334)
T COG0136 81 EVE------PKAAEAGCVVIDNSS 98 (334)
T ss_pred HHH------HHHHHcCCEEEeCCc
Confidence 443 233456788888875
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0042 Score=57.70 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=65.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEE-Ee----------CCccchh---hHHh------------CCCccCCCHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WN----------RTKSKCD---PLIS------------LGAKYQPSPDEV 124 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~-~d----------~~~~~~~---~~~~------------~g~~~~~~~~~~ 124 (290)
++||.|.|+|++|...|+.|...|.+|++ .| .+.++.. +.++ .+.... +.+++
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d~~ 306 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGARP 306 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCccc
Confidence 89999999999999999999999999987 44 1111111 0100 122322 33444
Q ss_pred h-hcCCeEEEEeCChhHHHHHhcccccccccCCC-CCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 125 A-ASCDVTFAMLADPESAMDVACGKHGAASGMGP-GKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 125 ~-~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~-~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+ .+|||++-|.- .+.| +++..+.++. +..+|-.+...|.+.+ -.+.|.++++.++.
T Consensus 307 ~~~~cDIliPaAl-----~n~I--~~~na~~l~a~g~~~V~EgAN~P~t~e-A~~~L~~rgI~~~P 364 (444)
T PRK14031 307 WGEKGDIALPSAT-----QNEL--NGDDARQLVANGVIAVSEGANMPSTPE-AIKVFQDAKILYAP 364 (444)
T ss_pred ccCCCcEEeeccc-----cccc--CHHHHHHHHhcCCeEEECCCCCCCCHH-HHHHHHHCCcEEeC
Confidence 3 46999875543 3334 3333444443 4445555544465554 44677788887764
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0025 Score=57.32 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=54.1
Q ss_pred CCCeEEEEcc-cHhHHHHHHHHHHCCC---eEEEEeCCccchhh--HHhCCCccCCCHHHH-hhcCCeEEEEeCChhHHH
Q 022909 70 LPGRIGFLGM-GIMGTPMAQNLLKAGC---DVTVWNRTKSKCDP--LISLGAKYQPSPDEV-AASCDVTFAMLADPESAM 142 (290)
Q Consensus 70 ~~~~IgiiG~-G~iG~~la~~l~~~g~---~V~~~d~~~~~~~~--~~~~g~~~~~~~~~~-~~~aDivv~~~p~~~~~~ 142 (290)
++++|+|||+ |.+|+.+.+.|....+ ++.........-+. +....+.+. ++++. +.++|++++++|.. ...
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~-~s~ 80 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGRE-ASA 80 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHH-HHH
Confidence 3789999995 9999999999998433 55544332211111 111112222 34443 26899999999764 333
Q ss_pred HHhcccccccccCCCCCEEEEecC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.+. + ...+.|..+||.|.
T Consensus 81 ~~~---~---~~~~~g~~VIDlS~ 98 (336)
T PRK08040 81 AYA---E---EATNAGCLVIDSSG 98 (336)
T ss_pred HHH---H---HHHHCCCEEEECCh
Confidence 433 1 12356889999984
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0043 Score=56.35 Aligned_cols=88 Identities=18% Similarity=0.290 Sum_probs=53.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCC-CeEEEEeCCccchh-hHHh---C-----------CCcc-CCCHHHHhhcCCeEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCD-PLIS---L-----------GAKY-QPSPDEVAASCDVTF 132 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~-~~~~---~-----------g~~~-~~~~~~~~~~aDivv 132 (290)
++||+|+| .|.+|+.+.+.|..+. +++..+.+++.+.. .+.. . .+.+ ..+.+ .+.++|+|+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvVf 81 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIVF 81 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEEE
Confidence 58999998 8999999999998765 47777644432221 1110 0 0111 12334 347899999
Q ss_pred EEeCChhHHHHHhcccccccccCCCCCEEEEecC
Q 022909 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 133 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++|.... ..+. + ...+.|..+|+.|.
T Consensus 82 ~a~p~~~s-~~~~---~---~~~~~G~~vIDls~ 108 (349)
T PRK08664 82 SALPSDVA-GEVE---E---EFAKAGKPVFSNAS 108 (349)
T ss_pred EeCChhHH-HHHH---H---HHHHCCCEEEECCc
Confidence 99987433 3332 1 11235777888764
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.014 Score=52.53 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=46.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCC-------CeEEEEeCCccc--hhh----HHh------CCCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAG-------CDVTVWNRTKSK--CDP----LIS------LGAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g-------~~V~~~d~~~~~--~~~----~~~------~g~~~~~~~~~~~~~aDi 130 (290)
..||+|+|+ |.+|+.++..|...+ .+|.++|+++.. .+. +.+ ..+....++.+.++++|+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 478999998 999999999998744 489999996532 211 110 012223566688899999
Q ss_pred EEEEeCC
Q 022909 131 TFAMLAD 137 (290)
Q Consensus 131 vv~~~p~ 137 (290)
||.+.-.
T Consensus 82 VI~tAG~ 88 (325)
T cd01336 82 AILVGAM 88 (325)
T ss_pred EEEeCCc
Confidence 9987643
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.008 Score=54.76 Aligned_cols=107 Identities=19% Similarity=0.277 Sum_probs=68.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc------------------chhhHHh-CCCccCCCHHHHhh-cCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS------------------KCDPLIS-LGAKYQPSPDEVAA-SCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~------------------~~~~~~~-~g~~~~~~~~~~~~-~aDi 130 (290)
++||+|=|+|++|+..|+.+...|.+|++++-+.. +.....+ .+.+..+. ++++. +|||
T Consensus 207 G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~~cDI 285 (411)
T COG0334 207 GARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEVDCDI 285 (411)
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccccCcE
Confidence 89999999999999999999999999988876655 2222222 24444433 45544 6998
Q ss_pred EEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.+-|. +.+.| +.+..+.++.. +++--++++. +. +..+.+.++|+-|+.
T Consensus 286 l~PcA-----~~n~I--~~~na~~l~ak-~V~EgAN~P~-t~-eA~~i~~erGIl~~P 333 (411)
T COG0334 286 LIPCA-----LENVI--TEDNADQLKAK-IVVEGANGPT-TP-EADEILLERGILVVP 333 (411)
T ss_pred Ecccc-----ccccc--chhhHHHhhhc-EEEeccCCCC-CH-HHHHHHHHCCCEEcC
Confidence 86443 44555 34445566555 4554444443 33 334555577877654
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.013 Score=54.99 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=67.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc--hhhHHh--CCCccCC--CHHHHhhcCCeEEEEe--CC-hhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLIS--LGAKYQP--SPDEVAASCDVTFAML--AD-PESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~--~~~~~~--~g~~~~~--~~~~~~~~aDivv~~~--p~-~~~~ 141 (290)
.-+|.|+|.|..|.++|+.|...|++|.++|..+.. .+.+.+ .|+.... ...+.+.++|+||..- |. .+..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 578999999999999999999999999999976432 223443 2554421 2234567899887753 22 2222
Q ss_pred HHHhcc------cccccccCCCCCEE-EEecCCChhHHHHHHHHHHHcCCcE
Q 022909 142 MDVACG------KHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 142 ~~~~~~------~~~~~~~~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~~~ 186 (290)
...... ..+++..+.+..+| |-=|.|...+..-+...|+..+..+
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~ 137 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRV 137 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCe
Confidence 221100 01222222233343 3333455555666666776655433
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0066 Score=56.49 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=49.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHC-------CC--eEEEEeCCccchhhHHh----------CCCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKA-------GC--DVTVWNRTKSKCDPLIS----------LGAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~-------g~--~V~~~d~~~~~~~~~~~----------~g~~~~~~~~~~~~~aDi 130 (290)
.-||+|||+ |++|..+|-.|... +. ++.++|++.++.+..+- ..+....+..+.+++||+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 468999999 99999999999876 54 78899998877543221 022222345577899999
Q ss_pred EEEEeCC
Q 022909 131 TFAMLAD 137 (290)
Q Consensus 131 vv~~~p~ 137 (290)
||++...
T Consensus 180 VVitAG~ 186 (444)
T PLN00112 180 ALLIGAK 186 (444)
T ss_pred EEECCCC
Confidence 9998654
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.01 Score=47.47 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=50.2
Q ss_pred CCeEEEEcc--cHhHHHHHHHHHHCCCeEEEEeCCccc--h--hhH-------HhCC--CccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGM--GIMGTPMAQNLLKAGCDVTVWNRTKSK--C--DPL-------ISLG--AKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~--G~iG~~la~~l~~~g~~V~~~d~~~~~--~--~~~-------~~~g--~~~~~~~~~~~~~aDivv~~~ 135 (290)
++||++||- +++..+++..+..+|+++.++.+..-. . +.+ .+.| +..++++++.++++|+|..-.
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~~ 81 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTDR 81 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEES
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEcC
Confidence 689999993 899999999999999999998876521 1 111 1123 456789999999999998765
Q ss_pred CC
Q 022909 136 AD 137 (290)
Q Consensus 136 p~ 137 (290)
-.
T Consensus 82 ~~ 83 (158)
T PF00185_consen 82 WQ 83 (158)
T ss_dssp SS
T ss_pred cc
Confidence 33
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0074 Score=53.46 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=52.1
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
.||+|+| .|..|..+.+.|..+. .++.....+.. .. ..+.+++++++|++++++|.. ....+. +
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~-~~~~~~~~~~~D~vFlalp~~-~s~~~~---~ 67 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KD-AAERAKLLNAADVAILCLPDD-AAREAV---S 67 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cC-cCCHhHhhcCCCEEEECCCHH-HHHHHH---H
Confidence 4799999 5999999999999874 35443322211 11 124567778999999999874 334443 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.....|..+||.|.
T Consensus 68 ---~~~~~g~~VIDlSa 81 (310)
T TIGR01851 68 ---LVDNPNTCIIDAST 81 (310)
T ss_pred ---HHHhCCCEEEECCh
Confidence 12346889999983
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0035 Score=54.74 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=37.7
Q ss_pred CCCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC
Q 022909 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL 113 (290)
Q Consensus 70 ~~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~ 113 (290)
|+++|.|.|. |.||+.+++.|...|++|++.+|++++.+.+.+.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~ 47 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAE 47 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 4688999996 9999999999999999999999998776655443
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0047 Score=54.29 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=27.3
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~ 103 (290)
||.|+|+|.+|..+|+.|...|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 58999999999999999999997 67777753
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0042 Score=55.61 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=45.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCC--CeEEEEeCCccchh--hHHhC----CCccCC---CHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAG--CDVTVWNRTKSKCD--PLISL----GAKYQP---SPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g--~~V~~~d~~~~~~~--~~~~~----g~~~~~---~~~~~~~~aDivv~~~p~ 137 (290)
++||+|||+ |++|..++..+...+ .++.++|+.....+ ++.+. .+...+ +..+.++++|+|+++.-.
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 579999999 999999999998555 58999998432221 11110 111121 225788999999988754
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0052 Score=55.90 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=31.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|||+|.+|..+++.|+..|. ++.++|.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 7899999999999999999999997 788998764
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.016 Score=48.26 Aligned_cols=116 Identities=15% Similarity=0.219 Sum_probs=64.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh----------CCCccCCCHHHHhh--cCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS----------LGAKYQPSPDEVAA--SCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~----------~g~~~~~~~~~~~~--~aDivv~~~p~ 137 (290)
..+|.|||+|.+|..+++.|...|. +++++|.+.-....+.. .|...+....+.++ ..|+-+.....
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~ 98 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEE 98 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 7899999999999999999999997 68999876322111111 11111111111121 24444444432
Q ss_pred hhH-HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 138 PES-AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 138 ~~~-~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
... ..... .+. +++-.++|++ .........+.+..++.++.++.+...+
T Consensus 99 ~~~~~~~~~---~~~---~~~~dvVi~~-~d~~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 99 DSLSNDSNI---EEY---LQKFTLVIAT-EENYERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred ccccchhhH---HHH---HhCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 211 01110 111 2333466766 4445555667788888888887765443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0021 Score=59.22 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=30.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~ 103 (290)
..+|.|||+|.+|..+++.|...|. +++++|.+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 6899999999999999999999997 78888875
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0026 Score=57.45 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=53.0
Q ss_pred eEEEEc-ccHhHHHHHHHHHHCCCeE---EEEeCCccchhhHHhCCC--ccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 73 RIGFLG-MGIMGTPMAQNLLKAGCDV---TVWNRTKSKCDPLISLGA--KYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 73 ~IgiiG-~G~iG~~la~~l~~~g~~V---~~~d~~~~~~~~~~~~g~--~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
+|+|+| .|.+|+.+.+.|...++++ ....+.....+.+...+. ...+-..+.++++|+|+.++|.. ......
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence 589999 6999999999999977753 333343322222222221 11111123458899999999764 444443
Q ss_pred ccccccccCCCCCEEEEecC
Q 022909 147 GKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~ 166 (290)
...++.|..+||.|.
T Consensus 79 -----~~~~~~G~~VID~ss 93 (339)
T TIGR01296 79 -----PKAAKCGAIVIDNTS 93 (339)
T ss_pred -----HHHHHCCCEEEECCH
Confidence 122456788998874
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.013 Score=53.78 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=31.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|+|+|.+|..++..|+..|. +++++|++.
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 6899999999999999999999998 799999873
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0069 Score=53.27 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=33.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
+++|||+|+|.+|..-.+..+++|++|++.|++..+.++
T Consensus 182 G~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkee 220 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEE 220 (360)
T ss_pred CcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHH
Confidence 799999999999998888888999999999998754443
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0062 Score=54.64 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=44.3
Q ss_pred eEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCCccc--hhh----HHh------CCCccCCCHHHHhhcCCeEE
Q 022909 73 RIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LIS------LGAKYQPSPDEVAASCDVTF 132 (290)
Q Consensus 73 ~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~~~~--~~~----~~~------~g~~~~~~~~~~~~~aDivv 132 (290)
+|+|||+ |++|..++..|...+. ++.++|+++.. .+. +.+ .++....+..+.+++||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5999999 9999999999987553 59999986542 111 111 01111224457789999999
Q ss_pred EEeCC
Q 022909 133 AMLAD 137 (290)
Q Consensus 133 ~~~p~ 137 (290)
++.-.
T Consensus 81 itAG~ 85 (324)
T TIGR01758 81 LVGAF 85 (324)
T ss_pred EcCCC
Confidence 87654
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.021 Score=48.71 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=66.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC--------CCc-cCCCHHHHhh--cCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAK-YQPSPDEVAA--SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~-~~~~~~~~~~--~aDivv~~~p~~ 138 (290)
..+|.|+|+|.+|..+++.|+..|. +++++|.+.-....+... |.. ......+.++ +.|+.+.+.+..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~ 106 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGR 106 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 7899999999999999999999997 788998765433332211 110 0000011111 467766665432
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
-.... + .+.+++-.++|++.-. ......+.+...+.++.++...+.+
T Consensus 107 ~~~~~-~------~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 107 LSEEN-I------DEVLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred CCHHH-H------HHHHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 11111 1 1223455678887443 4444455666777788888755543
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.033 Score=53.08 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=47.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc--hhhHHhC--CCccC--CCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISL--GAKYQ--PSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~--~~~~~~~--g~~~~--~~~~~~~~~aDivv~~ 134 (290)
+++|.|+|.|..|.++|+.|...|++|.++|.+... .+.+.+. |+... ...++.+.++|+||..
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 578999999999999999999999999999976432 2334443 33322 1234556789998886
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.017 Score=54.46 Aligned_cols=109 Identities=10% Similarity=0.042 Sum_probs=70.8
Q ss_pred CCeEEEEcc----------cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC----------------------CCccC
Q 022909 71 PGRIGFLGM----------GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----------------------GAKYQ 118 (290)
Q Consensus 71 ~~~IgiiG~----------G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~----------------------g~~~~ 118 (290)
+++|+|+|+ ..-...+++.|...|.+|.+||+.-...+.-... ++..+
T Consensus 324 ~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (473)
T PLN02353 324 GKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVV 403 (473)
T ss_pred CCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeee
Confidence 789999997 3467899999999999999999974332111011 23445
Q ss_pred CCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 119 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 119 ~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++.+++++++|+|++++..+ +.+.+- -+++.+.|++..+++|.-+.- +. +.+++.|..|..
T Consensus 404 ~~~~~a~~~aD~vvi~t~~~-ef~~l~--~~~~~~~m~~~~~viD~rn~l--~~----~~~~~~G~~y~~ 464 (473)
T PLN02353 404 WDAYEATKGAHGICILTEWD-EFKTLD--YQKIYDNMQKPAFVFDGRNVL--DH----EKLREIGFIVYS 464 (473)
T ss_pred CCHHHHhcCCCEEEECCCCh-HhcccC--HHHHHHhccCCCEEEECCCCC--CH----HHHHhCCcEEEE
Confidence 67778999999999998763 343321 122344566656889874432 22 223344777765
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.027 Score=50.11 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=79.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCCeEE-EEeCCccchhhHHh-CCCc--------cCCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGCDVT-VWNRTKSKCDPLIS-LGAK--------YQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~~V~-~~d~~~~~~~~~~~-~g~~--------~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
.-|||+||.|.||+.+...... .|++|. +.|++.+...+..+ .+.. ..+...++++.-.+.+ +.
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~v-----T~ 91 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAV-----TD 91 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEE-----ec
Confidence 4689999999999999888764 588876 55787766544333 1211 1233444554444433 12
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc-CCcEEe--CccCCCCccc----cCCceEEEecCC-H
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT-GASFLE--APVSGSKKPA----EDGQLIFLAAGD-K 211 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~-~~~~~~--~p~~~~~~~~----~~~~~~~~~~~~-~ 211 (290)
+...++ ... .=..+|+.+..+.+-.+--.+++..+ .+..++ .+++-++... ..+...-.+.|| +
T Consensus 92 D~~~i~--~~~------~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP 163 (438)
T COG4091 92 DAELII--AND------LIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEP 163 (438)
T ss_pred chhhhh--cCC------cceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCCCc
Confidence 223333 111 11256777555444444444444332 222222 3333333211 222222223333 4
Q ss_pred HHHHHHHHHHHHhCCcEEEeC
Q 022909 212 SLYNTVAPLLDIMGKSRFYLG 232 (290)
Q Consensus 212 ~~~~~v~~ll~~~G~~~~~~~ 232 (290)
...-.+.++.+++|..++.++
T Consensus 164 ~~~mEL~efa~a~G~evv~aG 184 (438)
T COG4091 164 SSCMELYEFASALGFEVVSAG 184 (438)
T ss_pred HHHHHHHHHHHhcCCeEEecc
Confidence 666788899999999888765
|
|
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.013 Score=52.87 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=60.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--------CCeE--E-EEeCCccchh-------hHHhCC--Cc-----cCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--------GCDV--T-VWNRTKSKCD-------PLISLG--AK-----YQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--------g~~V--~-~~d~~~~~~~-------~~~~~g--~~-----~~~~~~~~~ 125 (290)
..+|+|+|+|.+|+.+++.|... |.++ . +.+++..... .+.+.+ .. ...+.++.+
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERA 81 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHh
Confidence 47899999999999999998542 4433 3 3454432211 110000 00 111222222
Q ss_pred -h--cCCeEEEEeCCh----hHHHHHhcccccccccCCCCCEEEEecCCC-hhHHHHHHHHHHHcCCcEE
Q 022909 126 -A--SCDVTFAMLADP----ESAMDVACGKHGAASGMGPGKGYVDVSTVD-GDTSKLINGHIKATGASFL 187 (290)
Q Consensus 126 -~--~aDivv~~~p~~----~~~~~~~~~~~~~~~~~~~~~~lin~s~~~-~~~~~~l~~~l~~~~~~~~ 187 (290)
. +.|+||-++|.+ +.....+ ..+++.|..+|-..-.. ....++|.+..++++..+.
T Consensus 82 ~~~~~~dVvVe~T~s~~~~~e~a~~~~------~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~ 145 (346)
T PRK06813 82 TDNISGTVLVESTVTNLKDGNPGKQYI------KQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR 145 (346)
T ss_pred cCCCCCCEEEECCCCccCCchHHHHHH------HHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE
Confidence 2 479999998754 2222222 45677888887543221 1233567676777777654
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0067 Score=53.74 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=44.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC--CeEEEEeCCccchhhHH----h------CCCccCC-CHHHHhhcCCeEEEEe
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLI----S------LGAKYQP-SPDEVAASCDVTFAML 135 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~~~~~~~----~------~g~~~~~-~~~~~~~~aDivv~~~ 135 (290)
+||+|||.|++|+++|-.|...+ .++.++|...++.+..+ + ....... .-.+.++++|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 58999999999999999996554 48999999855433211 1 0112222 1145678999999987
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.11 Score=43.30 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=70.3
Q ss_pred CCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccC
Q 022909 114 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVS 192 (290)
Q Consensus 114 g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~ 192 (290)
|+..+++-.|+++++|+|+.-+|.......++ +++.+.+++|+++-+.++.+......+.+.+.+..+.+-+ +|-.
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdii---kkfiddipegaivthactipttkf~kifed~gredlnvtsyhpg~ 202 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDII---KKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSYHPGT 202 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHH---HHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceeccCCCC
Confidence 45566777889999999999999876666666 5677889999999999888877666666655544444433 4422
Q ss_pred CCCccccCCceEEEec-CCHHHHHHHHHHHHHh
Q 022909 193 GSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIM 224 (290)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~ll~~~ 224 (290)
- ...+++..+..| .++++++.+.++=+..
T Consensus 203 v---pemkgqvyiaegyaseeavn~lyelg~ka 232 (343)
T COG4074 203 V---PEMKGQVYIAEGYASEEAVNALYELGEKA 232 (343)
T ss_pred C---ccccCcEEEecccccHHHHHHHHHHHHHh
Confidence 2 223455443333 2567777666665443
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.014 Score=52.37 Aligned_cols=89 Identities=20% Similarity=0.201 Sum_probs=62.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHH-HHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPD-EVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~-~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+.+|.|.|.|.+|...++.++..|.+|++.++++++.+.+++.|...+-+.. +.-+..|+++.+...... + .
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~----~---~ 238 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGL----V---P 238 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHH----H---H
Confidence 6799999999999999999999999999999998888777777764332211 111246777766654322 2 2
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
..++.++++..++..+.
T Consensus 239 ~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 239 PALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHHhhCCCcEEEEEec
Confidence 23567788887776653
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.015 Score=45.02 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=48.5
Q ss_pred EecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCC
Q 022909 206 LAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAA---MKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSF 280 (290)
Q Consensus 206 ~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~---~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~ 280 (290)
.+.++++..+.+++++..+|.+++.+.......+ ..+.+|+...++ ..+..++++.|++.+++.+++...+.
T Consensus 5 ~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~~L~---~~a~~ll~~~gi~~~~a~~~L~PLi~ 79 (132)
T PF10728_consen 5 AIEGDEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLVALY---ALAAELLEQAGIDFEEALEALLPLIR 79 (132)
T ss_dssp EEEESHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTT-SHHH--HHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHHHHH---HHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 3344899999999999999999998877554443 335566655444 66777889999999776666655443
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.006 Score=55.03 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=53.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHH-CCCe---EEEEeC--CccchhhHHhCCCccC-CCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLK-AGCD---VTVWNR--TKSKCDPLISLGAKYQ-PSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~-~g~~---V~~~d~--~~~~~~~~~~~g~~~~-~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
.++|||||+ |.+|+.+.+.|.. ..++ +..+.. +..+.-.+....+... .+.++ +++.|+++.++|.. ..+
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s~ 82 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VSR 82 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HHH
Confidence 579999995 9999999999995 5565 443432 2222111111112211 13333 47899999999764 444
Q ss_pred HHhcccccccccCCCCCEEEEecC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.+. . ...+.|..+||.|+
T Consensus 83 ~~~---~---~~~~~G~~VID~Ss 100 (347)
T PRK06728 83 QFV---N---QAVSSGAIVIDNTS 100 (347)
T ss_pred HHH---H---HHHHCCCEEEECch
Confidence 443 1 22356889999984
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.02 Score=53.94 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=43.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-CCc-cCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAK-YQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~-~~~~~~~~~~~aDivv~~ 134 (290)
+++|+|+|+|.-|.+.++.|.. |.+|+++|.++.....+.+. ... ......+.+.++|+||..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~S 70 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLS 70 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEEC
Confidence 6899999999999999999995 99999999654433222221 111 111223456789988775
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0063 Score=54.58 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=46.0
Q ss_pred eEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCCc--cchhhH----HhC------CCccCCCHHHHhhcCCeEE
Q 022909 73 RIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTK--SKCDPL----ISL------GAKYQPSPDEVAASCDVTF 132 (290)
Q Consensus 73 ~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~~--~~~~~~----~~~------g~~~~~~~~~~~~~aDivv 132 (290)
||+|+|+ |.+|..++..|...|. ++.++|+++ +..+.. .+. +.....+..+.+++||+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 7999999 9999999999987553 499999986 432211 110 1222245678899999999
Q ss_pred EEeCC
Q 022909 133 AMLAD 137 (290)
Q Consensus 133 ~~~p~ 137 (290)
++.-.
T Consensus 82 itAG~ 86 (323)
T cd00704 82 LVGAF 86 (323)
T ss_pred EeCCC
Confidence 87643
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.022 Score=53.18 Aligned_cols=113 Identities=22% Similarity=0.202 Sum_probs=64.9
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccch-h----hHH-hCCCccCC-CHHHHhhcCCeEEEEeC---ChhHHH
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-D----PLI-SLGAKYQP-SPDEVAASCDVTFAMLA---DPESAM 142 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~-~----~~~-~~g~~~~~-~~~~~~~~aDivv~~~p---~~~~~~ 142 (290)
+|.|||.|..|.++|+.|...|++|.++|..+... . .+. ..|+.... ...+.+.++|+||..-. .++...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 48999999999999999999999999999765421 1 122 23554321 12455678998877532 222222
Q ss_pred HHhc------ccccccccCCCCCEE-EEecCCChhHHHHHHHHHHHcCCc
Q 022909 143 DVAC------GKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGAS 185 (290)
Q Consensus 143 ~~~~------~~~~~~~~~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~~ 185 (290)
.... ...+++..+.+..+| |-=|.|...+..-+...|+..+..
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~ 130 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLK 130 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 2110 011122222233333 333456666666666777765544
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.015 Score=51.80 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=55.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+.++.|+|+|.+|...++.++..|.+ |.+.++++++.+...+..+ .+..++.-...|+|+-++.........
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~~~~~~~----- 217 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDPSLIDTL----- 217 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCHHHHHHH-----
Confidence 57899999999999999999999987 5567777665544333211 111111123478888887653333322
Q ss_pred cccccCCCCCEEEEec
Q 022909 150 GAASGMGPGKGYVDVS 165 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s 165 (290)
++.++++..++.++
T Consensus 218 --~~~l~~~G~iv~~G 231 (308)
T TIGR01202 218 --VRRLAKGGEIVLAG 231 (308)
T ss_pred --HHhhhcCcEEEEEe
Confidence 45677777777665
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0095 Score=54.60 Aligned_cols=62 Identities=23% Similarity=0.248 Sum_probs=44.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchh-hHHhCCC-ccCCC---HHHHhhcCCeEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGA-KYQPS---PDEVAASCDVTF 132 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~-~~~~~g~-~~~~~---~~~~~~~aDivv 132 (290)
+++|||||.|..|+.++..+.+.|++|+++|++++... ...+.-+ ...++ +.++++.+|+|.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit 68 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVIT 68 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEE
Confidence 37899999999999999999999999999998865422 2222111 11223 555677889875
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.022 Score=48.75 Aligned_cols=90 Identities=28% Similarity=0.297 Sum_probs=58.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc-CC----CHHHH-----hhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QP----SPDEV-----AASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~----~~~~~-----~~~aDivv~~~p~~~~ 140 (290)
+.+|.|.|.|.+|+.+++.++..|.+|.+.++++++.+.+++.+... .+ +..+. -...|+++.+++....
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~ 214 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPET 214 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHH
Confidence 67999999999999999999999999999999877666555443211 10 11111 1346777776654222
Q ss_pred HHHHhcccccccccCCCCCEEEEecCC
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
... .++.++++..+++.+..
T Consensus 215 ~~~-------~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 215 LAQ-------ALRLLRPGGRIVVVGGT 234 (271)
T ss_pred HHH-------HHHhcccCCEEEEEccC
Confidence 222 24556666667766543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.016 Score=49.35 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=60.0
Q ss_pred EEEEeCCccchhhHHh-CCCccCCCHHHHh-hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCC---hhH
Q 022909 97 VTVWNRTKSKCDPLIS-LGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD---GDT 171 (290)
Q Consensus 97 V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~-~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~---~~~ 171 (290)
+.+||+++++.+.+.+ .|+..++++++++ .+.|+|++|.|.....+.. ...++.|..++-.+.+. ...
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a-------~~aL~aGkhVl~~s~gAlad~e~ 77 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYA-------EKILKNGKDLLIMSVGALADREL 77 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHH-------HHHHHCCCCEEEECCcccCCHHH
Confidence 4589999888777665 5677788999987 4799999999875554433 34466666555566553 345
Q ss_pred HHHHHHHHHHcCCcEEe
Q 022909 172 SKLINGHIKATGASFLE 188 (290)
Q Consensus 172 ~~~l~~~l~~~~~~~~~ 188 (290)
.+++.+..++.|..+.-
T Consensus 78 ~~~l~~aA~~~g~~l~i 94 (229)
T TIGR03855 78 RERLREVARSSGRKVYI 94 (229)
T ss_pred HHHHHHHHHhcCCEEEE
Confidence 67788888887766443
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0038 Score=57.59 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=30.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|||+|.+|..+++.|+..|. +++++|.+.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 6899999999999999999999997 788888753
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.023 Score=52.07 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=45.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC-------eEEEE--eCCccchhhHHh----------CCCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVW--NRTKSKCDPLIS----------LGAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~--d~~~~~~~~~~~----------~g~~~~~~~~~~~~~aDi 130 (290)
.-||+|||+ |++|..+|-.+...|. .+.++ |++.++++..+- ..+....+..+.+++||+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDI 123 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADW 123 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCE
Confidence 478999999 9999999999987654 23344 777766433211 122323344577899999
Q ss_pred EEEEeCC
Q 022909 131 TFAMLAD 137 (290)
Q Consensus 131 vv~~~p~ 137 (290)
||++...
T Consensus 124 VVitAG~ 130 (387)
T TIGR01757 124 ALLIGAK 130 (387)
T ss_pred EEECCCC
Confidence 9997653
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0071 Score=58.35 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=29.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~ 103 (290)
..+|.|+|+|.+|..+|+.|.+.|. +++++|.+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 5799999999999999999999997 67777753
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0086 Score=48.95 Aligned_cols=65 Identities=15% Similarity=0.313 Sum_probs=42.4
Q ss_pred eEEEEcccHhHHHH--HHHHHHC----CCeEEEEeCCccchhhHHh--------CC----CccCCCHHHHhhcCCeEEEE
Q 022909 73 RIGFLGMGIMGTPM--AQNLLKA----GCDVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 73 ~IgiiG~G~iG~~l--a~~l~~~----g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivv~~ 134 (290)
||+|||.|..-... ...+... +-+|.++|+++++.+.... .+ +..++|.+++++++|+|+..
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 69999999876542 2222222 2389999999988664322 22 34578999999999999998
Q ss_pred eCC
Q 022909 135 LAD 137 (290)
Q Consensus 135 ~p~ 137 (290)
.-.
T Consensus 81 irv 83 (183)
T PF02056_consen 81 IRV 83 (183)
T ss_dssp --T
T ss_pred eee
Confidence 753
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.015 Score=51.62 Aligned_cols=64 Identities=23% Similarity=0.270 Sum_probs=50.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhh---HHhC------------CCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP---LISL------------GAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~---~~~~------------g~~~~~~~~~~~~~aDivv~~ 134 (290)
+++|+|-|+ |.||+.+.+.|...||.|.+.-|++++.+. +.+. .+.-..+++++++.||.|+-+
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~ 85 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHT 85 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEe
Confidence 689999995 999999999999999999999999876322 2221 123346889999999998743
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.013 Score=59.26 Aligned_cols=70 Identities=29% Similarity=0.379 Sum_probs=53.9
Q ss_pred CCCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc------------h---------hhHHhCCCcc--------CC
Q 022909 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK------------C---------DPLISLGAKY--------QP 119 (290)
Q Consensus 69 ~~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~------------~---------~~~~~~g~~~--------~~ 119 (290)
.++++|+|||.|.-|.+-|..|-+.||.|++|.|+..- . +-+.+.|+.+ ..
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~v 1862 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHV 1862 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccc
Confidence 44899999999999999999999999999999987431 1 1122234433 24
Q ss_pred CHHHHhhcCCeEEEEeCCh
Q 022909 120 SPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 120 ~~~~~~~~aDivv~~~p~~ 138 (290)
+++++.+.-|.||+++-.+
T Consensus 1863 s~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1863 SLDELKKENDAIVLATGST 1881 (2142)
T ss_pred cHHHHhhccCeEEEEeCCC
Confidence 7899999999999997644
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.015 Score=57.42 Aligned_cols=67 Identities=22% Similarity=0.431 Sum_probs=50.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc---------------------chhhHHhCCCccC--------CCH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS---------------------KCDPLISLGAKYQ--------PSP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~---------------------~~~~~~~~g~~~~--------~~~ 121 (290)
+++|.|||.|..|...|..|+..|++|+++++.+. ..+.+.+.|+.+. .+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~ 406 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISL 406 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCH
Confidence 78999999999999999999999999999998643 1122333454321 145
Q ss_pred HHHhhcCCeEEEEeCC
Q 022909 122 DEVAASCDVTFAMLAD 137 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~ 137 (290)
+++..+.|.|++++..
T Consensus 407 ~~~~~~~DavilAtGa 422 (654)
T PRK12769 407 ESLLEDYDAVFVGVGT 422 (654)
T ss_pred HHHHhcCCEEEEeCCC
Confidence 5666789999998753
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.056 Score=47.29 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=67.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEE-EEeCCccchh---hHHhCCCccC--CCHHHHhh-----cCCeEEEEeCCh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCD---PLISLGAKYQ--PSPDEVAA-----SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~-~~d~~~~~~~---~~~~~g~~~~--~~~~~~~~-----~aDivv~~~p~~ 138 (290)
..+|.|.|+ |+||+.+++...+.++++. ..|+.+...+ .+...++... .++++++. .+|.|++=...+
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P 90 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLP 90 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCCh
Confidence 578999995 9999999999988888766 4565543211 1111234444 78888873 378566555566
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
..+...+ ....+.+.-+|--++|-.. +++.+...+.++..+-+|+|.
T Consensus 91 ~a~~~~~------~~~~~~g~~~VvGTTG~~~--e~l~~~~~~~~i~vv~apNfS 137 (286)
T PLN02775 91 DAVNDNA------ELYCKNGLPFVMGTTGGDR--DRLLKDVEESGVYAVIAPQMG 137 (286)
T ss_pred HHHHHHH------HHHHHCCCCEEEECCCCCH--HHHHHHHhcCCccEEEECccc
Confidence 6665554 1223344444433343322 244444444567677677654
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.034 Score=48.81 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=31.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|||+|.+|..++..|+..|. ++.++|.+.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 6899999999999999999999997 788998764
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.021 Score=51.63 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=38.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+|.|.+|...++.++..|.+|++.++++++.+.+++.|+
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 689999999999999999999999999999998887766655554
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.019 Score=53.39 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=66.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEE--------EeCC---ccchhhHHh---------------C-CCccCCCHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTV--------WNRT---KSKCDPLIS---------------L-GAKYQPSPDE 123 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~--------~d~~---~~~~~~~~~---------------~-g~~~~~~~~~ 123 (290)
++||.|-|+|++|+..|+.|...|.+|++ ||++ .++.+.+.+ . +.+.. +.++
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~ 306 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKK 306 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCcc
Confidence 79999999999999999999999999988 7744 222111111 1 22222 2334
Q ss_pred Hhh-cCCeEEEEeCChhHHHHHhcccccccccC-CCCC-EEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 124 VAA-SCDVTFAMLADPESAMDVACGKHGAASGM-GPGK-GYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 124 ~~~-~aDivv~~~p~~~~~~~~~~~~~~~~~~~-~~~~-~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++. +|||++-|- +.+.+ +.+..+.+ +.++ +|+--+++ +.+. +-.+.|.++|+.++.
T Consensus 307 ~~~~~cDVliPcA-----l~n~I--~~~na~~l~~~~ak~V~EgAN~-p~t~-eA~~iL~~rGI~~vP 365 (445)
T PRK14030 307 PWEQKVDIALPCA-----TQNEL--NGEDADKLIKNGVLCVAEVSNM-GCTA-EAIDKFIAAKQLFAP 365 (445)
T ss_pred ceeccccEEeecc-----ccccC--CHHHHHHHHHcCCeEEEeCCCC-CCCH-HHHHHHHHCCCEEeC
Confidence 443 589887554 33444 23333334 2233 45555555 5544 455788888988764
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.023 Score=50.16 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||..+++.|+..|++|++.+|+.++.+.+
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~ 80 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV 80 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 688999995 9999999999999999999999987655443
|
|
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.026 Score=52.50 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=65.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCC----------ccchhhHH---h-------------CCCccCCCHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLI---S-------------LGAKYQPSPDE 123 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~----------~~~~~~~~---~-------------~g~~~~~~~~~ 123 (290)
++||.|-|+|++|+..|+.|...|.+|+ +.|.+ .+++..+. + .+....+ .++
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~-~~~ 315 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVP-GKK 315 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeC-CcC
Confidence 7999999999999999999999999988 66665 22221111 1 0222222 223
Q ss_pred Hh-hcCCeEEEEeCChhHHHHHhcccccccccC-CCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 124 VA-ASCDVTFAMLADPESAMDVACGKHGAASGM-GPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 124 ~~-~~aDivv~~~p~~~~~~~~~~~~~~~~~~~-~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++ -+|||.+-|- +.+.+ +.+..+.+ +.++.+|--+...+.+. +-.+.|.++++.|+.
T Consensus 316 ~~~~~cDI~iPcA-----~~n~I--~~~~a~~l~~~~ak~V~EgAN~p~t~-eA~~~L~~~GI~~~P 374 (454)
T PTZ00079 316 PWEVPCDIAFPCA-----TQNEI--NLEDAKLLIKNGCKLVAEGANMPTTI-EATHLFKKNGVIFCP 374 (454)
T ss_pred cccCCccEEEecc-----ccccC--CHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHCCcEEEC
Confidence 33 3689887654 23333 22222322 44555555544445555 556788888888864
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.012 Score=41.15 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=31.4
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
+|.|||.|.+|..+|..|...|.+|+++.+++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5899999999999999999999999999988654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.02 Score=48.69 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=33.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|.|. |.+|+.+++.|...|++|++.+|++++.+.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 45 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEA 45 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 578999985 999999999999999999999998765443
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.032 Score=50.07 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=39.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+|.|.+|...++.++..|.+ |++.++++++.+.+++.|+
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga 209 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA 209 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 68999999999999999999999998 9999998887766666554
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.023 Score=48.41 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=34.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|.|. |.||+.+++.|...|++|.+.+|++++...
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARE 46 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 689999995 999999999999999999999988765443
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.024 Score=50.44 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=46.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh---C------------CCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS---L------------GAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~---~------------g~~~~~~~~~~~~~aDivv~~ 134 (290)
+++|.|.| +|.||+.+++.|...|++|.+.+|++........ . .+....+++++++++|+|+.+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 83 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHT 83 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEe
Confidence 68999999 6999999999999999999988887654221110 0 111123466778888988766
Q ss_pred e
Q 022909 135 L 135 (290)
Q Consensus 135 ~ 135 (290)
.
T Consensus 84 A 84 (322)
T PLN02662 84 A 84 (322)
T ss_pred C
Confidence 5
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.068 Score=46.54 Aligned_cols=112 Identities=17% Similarity=0.105 Sum_probs=64.1
Q ss_pred eEEEEcc-cHhHHHHHHHHHHCCCeEEEE--eCCcc--chhhHHhCCCcc------CCCHHHHhhc-CCeEEEEeCChhH
Q 022909 73 RIGFLGM-GIMGTPMAQNLLKAGCDVTVW--NRTKS--KCDPLISLGAKY------QPSPDEVAAS-CDVTFAMLADPES 140 (290)
Q Consensus 73 ~IgiiG~-G~iG~~la~~l~~~g~~V~~~--d~~~~--~~~~~~~~g~~~------~~~~~~~~~~-aDivv~~~p~~~~ 140 (290)
+|.|.|+ |+||+.+++.....++++... ++... +...+...++.. ..+++++++. +|.|++=...|..
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT~P~~ 81 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYTHPSA 81 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECCChHH
Confidence 6899995 999999999988888887753 43321 111121123444 5688888877 8955554445566
Q ss_pred HHHHhcccccccccCCCCC-EEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 141 AMDVACGKHGAASGMGPGK-GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~-~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
+...+ ....+.+. ++|-++.......+++ .+..++..+-+|+|.
T Consensus 82 ~~~n~------~~~~~~gv~~ViGTTG~~~~~~~~l---~~~~~i~~l~apNfS 126 (275)
T TIGR02130 82 VNDNA------AFYGKHGIPFVMGTTGGDREALAKL---VADAKHPAVIAPNMA 126 (275)
T ss_pred HHHHH------HHHHHCCCCEEEcCCCCCHHHHHHH---HHhcCCCEEEECccc
Confidence 55554 12233343 4454433333333333 333356666677654
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.013 Score=52.97 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=51.5
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCC-CeEEEE-eCCccchhhHHh-C------CC-------ccCCCHHHHhhcCCeEEEE
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAG-CDVTVW-NRTKSKCDPLIS-L------GA-------KYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g-~~V~~~-d~~~~~~~~~~~-~------g~-------~~~~~~~~~~~~aDivv~~ 134 (290)
++|+|+|+ |.+|+.+++.+..+. +++... +...+....+.+ . +. .+.+..++...++|+|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 47999995 999999999998866 577655 543322222211 0 01 0101122345789999999
Q ss_pred eCChhHHHHHhcccccccccCCCCCEEEEecC
Q 022909 135 LADPESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 135 ~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+|.... ..+. ......|..+|+.|.
T Consensus 81 ~p~~~s-~~~~------~~~~~~G~~VIDlsg 105 (341)
T TIGR00978 81 LPSEVA-EEVE------PKLAEAGKPVFSNAS 105 (341)
T ss_pred CCHHHH-HHHH------HHHHHCCCEEEECCh
Confidence 987533 3332 112245777777763
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.043 Score=51.65 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=45.5
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-h----hhHHhCCCccC--CCHH-----HHhhcCCeEEEEe
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-C----DPLISLGAKYQ--PSPD-----EVAASCDVTFAML 135 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~----~~~~~~g~~~~--~~~~-----~~~~~aDivv~~~ 135 (290)
+|.|||.|..|.+.|+.|...|++|.++|+.+.. . ..+.+.|+... ...+ +.+.+.|.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 5999999999999999999999999999986532 1 12444565442 1111 3567899888743
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.02 Score=56.28 Aligned_cols=67 Identities=19% Similarity=0.413 Sum_probs=50.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc---------------------chhhHHhCCCcc--------CCCH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS---------------------KCDPLISLGAKY--------QPSP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~---------------------~~~~~~~~g~~~--------~~~~ 121 (290)
+++|.|||.|..|...|..|+..|++|++|++.+. ..+.+.+.|+.+ ..++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~ 389 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITF 389 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCH
Confidence 79999999999999999999999999999998763 122233345432 1245
Q ss_pred HHHhhcCCeEEEEeCC
Q 022909 122 DEVAASCDVTFAMLAD 137 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~ 137 (290)
+++....|.|++++-.
T Consensus 390 ~~l~~~~DaV~latGa 405 (639)
T PRK12809 390 SDLTSEYDAVFIGVGT 405 (639)
T ss_pred HHHHhcCCEEEEeCCC
Confidence 6666789999998864
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.093 Score=45.20 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=32.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
..++-|+|.|.+++++++.+...|++|+++|.+++
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 47899999999999999999999999999997765
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.01 Score=52.81 Aligned_cols=65 Identities=26% Similarity=0.365 Sum_probs=47.0
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-------cCCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivv~~~p 136 (290)
|+|.|.| .|.+|+.+++.|.+.|++|.+.+|++++...+...++. ..+++.++++.+|+|+.+.+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4789998 59999999999999999999999987654333222222 11245566778998887653
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.03 Score=48.84 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
+++|.|.|. |.||+.+++.|...|++|.+.+|++++.+.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l 44 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADF 44 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHH
Confidence 678999985 9999999999999999999999987665444
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.018 Score=48.74 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=35.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
+++|.|.|. |.||..+++.|...|++|++.+|++++.+.+
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 689999995 8999999999999999999999987765443
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.053 Score=48.01 Aligned_cols=38 Identities=21% Similarity=0.115 Sum_probs=33.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
+++|.|.|. |.||..+++.|...|++|++.+|+.++.+
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~ 54 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGK 54 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 788999984 99999999999999999999999876543
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.065 Score=50.34 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=66.3
Q ss_pred eEEEEcccHhHHH-HHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccCC-CHHHHhhcCCeEEEEe--CC-hhHHHHHhc
Q 022909 73 RIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQP-SPDEVAASCDVTFAML--AD-PESAMDVAC 146 (290)
Q Consensus 73 ~IgiiG~G~iG~~-la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~-~~~~~~~~aDivv~~~--p~-~~~~~~~~~ 146 (290)
+|-+||.|..|.+ +|+.|...|++|.++|.+... .+.+.+.|+.... ...+.++++|+||..- |. .+.......
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 3789999999998 999999999999999976532 2345555665432 2234567799888752 22 233332211
Q ss_pred c------ccccc-ccCCCCCEE-EEecCCChhHHHHHHHHHHHcCC
Q 022909 147 G------KHGAA-SGMGPGKGY-VDVSTVDGDTSKLINGHIKATGA 184 (290)
Q Consensus 147 ~------~~~~~-~~~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~ 184 (290)
. ..+++ ..+++..++ |-=|.|+..++.-+...|+..+.
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 0 11122 223333343 33335566666666677776664
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.023 Score=49.16 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=45.1
Q ss_pred cccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhh-cCCeEEEEeCC
Q 022909 78 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLAD 137 (290)
Q Consensus 78 G~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivv~~~p~ 137 (290)
|+|-||+++...|...||+|++..|++.+........+...+.+++... .+|+||.-.-.
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~ 66 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGE 66 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCC
Confidence 5799999999999999999999999987765433333333445566655 59999876543
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.018 Score=49.45 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=46.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--CCcc-----CC---CHHHHh-hcCCeEEEEeC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKY-----QP---SPDEVA-ASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--g~~~-----~~---~~~~~~-~~aDivv~~~p 136 (290)
+++|.|+| .|.+|+.+++.|...|++|++..|++++....... ++.. .+ ++.+.+ ...|+|+.+.+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g 94 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATG 94 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCC
Confidence 68999999 59999999999999999999999887654332211 1211 11 233444 46898887654
|
|
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.085 Score=53.12 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=86.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHH--------CCCeE--E-EEeCCccc-------hhhHHhC--CCccCCCHH---HHhhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK--------AGCDV--T-VWNRTKSK-------CDPLISL--GAKYQPSPD---EVAAS 127 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~--------~g~~V--~-~~d~~~~~-------~~~~~~~--g~~~~~~~~---~~~~~ 127 (290)
..+|+++|+|.+|+.+++.|.. .|.++ . +.+++... ...+.+. ......+.+ +.+..
T Consensus 458 ~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~i~~ 537 (810)
T PRK09466 458 RIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLWLRA 537 (810)
T ss_pred eEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHHHhh
Confidence 4679999999999999999854 25443 3 44544321 1111110 000011222 33332
Q ss_pred --C--CeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCC----ChhHHHHHHHHHHHcCCcEEe-CccCCCCccc
Q 022909 128 --C--DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV----DGDTSKLINGHIKATGASFLE-APVSGSKKPA 198 (290)
Q Consensus 128 --a--Divv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~----~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~ 198 (290)
. ++||-+.+..+. ...+ .+.++.|..+|-..-. ......+|.+..++++..+.. +.+.++.
T Consensus 538 ~~~~~~vvVd~t~~~~~-~~~~------~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~gi--- 607 (810)
T PRK09466 538 HPYDELVVLDVTASEQL-ALQY------PDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGL--- 607 (810)
T ss_pred cCCCCcEEEECCCChHH-HHHH------HHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeecc---
Confidence 2 377777665332 2222 3556777777755431 233455666666666666543 3332222
Q ss_pred cCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Q 022909 199 EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFL 267 (290)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~ 267 (290)
..++.++.+.+. |.++..+..+-++-.- ++.+... . ..+.|++.-|++.|..
T Consensus 608 -------------Pii~~l~~l~~~-gd~i~~i~GIlnGT~n-yi~~~~~--~g~~f~eal~~Aq~~Gya 660 (810)
T PRK09466 608 -------------PINHTVRDLRNS-GDSILAISGIFSGTLS-WLFLQFD--GSVPFSELVDQAWQQGLT 660 (810)
T ss_pred -------------ChHHHHHHHHhc-cCcEEEEEEEEccHHH-HHHHHHh--cCCCHHHHHHHHHHcCCC
Confidence 123455555543 7666666554333321 1222111 1 5677888888888854
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.041 Score=49.68 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=57.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CC-CeEEEEeCCccchhhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~~ 146 (290)
+.+|.|+|+|.+|...++.++. .| .+|++.++++++.+.+++.+... ..+++.+ ..|+|+-++.... ....+
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G~~~-~~~~~- 239 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVGGRG-SQSAI- 239 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCCCCc-cHHHH-
Confidence 6899999999999998888875 44 68999999988776655433321 1122222 3688888876310 11112
Q ss_pred ccccccccCCCCCEEEEec
Q 022909 147 GKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s 165 (290)
...++.++++..++..+
T Consensus 240 --~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 240 --NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred --HHHHHhCcCCcEEEEEe
Confidence 12356678877777664
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.026 Score=48.30 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=35.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
+++|.|.| .|.+|+.+++.|...|++|.+.+|++++.+.+
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~ 44 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAA 44 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 68999999 59999999999999999999999987765443
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.024 Score=49.88 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=27.6
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~ 103 (290)
+|.|||+|.+|..+++.|+..|. ++++.|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 58999999999999999999997 68888764
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.034 Score=48.89 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=44.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccCCCHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPD 122 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~ 122 (290)
+.+++|.|+|.+|.++++..+.+|. +|+..|.|+++-+..++.|+.-+-+..
T Consensus 193 GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 193 GSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred CCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh
Confidence 7899999999999999999999996 899999999998888887765443433
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.029 Score=47.44 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=33.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
+++|.|.|. |.+|+.+++.|.+.|++|++.+|++++.+
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~ 43 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAE 43 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHH
Confidence 578999995 99999999999999999999999876544
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.026 Score=50.27 Aligned_cols=32 Identities=19% Similarity=0.452 Sum_probs=28.5
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
+|.|||+|.+|..+++.|+..|. +++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 58999999999999999999997 788888653
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.021 Score=48.56 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=34.2
Q ss_pred CCCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 70 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 70 ~~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
++++|.|.| .|.+|..+++.|...|++|++.+|++++..
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~ 44 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAA 44 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 378999999 699999999999999999999999865443
|
|
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0063 Score=48.11 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=51.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|++||+= ..+++.+...+.++.++|++++..... .+.......++++++||+|+++-. .-..+-+ ++
T Consensus 11 ~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti---~~ 80 (147)
T PF04016_consen 11 GDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITGS--TLVNGTI---DD 80 (147)
T ss_dssp TSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH---HH
T ss_pred CCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEee--eeecCCH---HH
Confidence 7999999951 126777777889999999998643221 111234567889999999998742 1111222 22
Q ss_pred ccccCCCCCEEEEecCC
Q 022909 151 AASGMGPGKGYVDVSTV 167 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~ 167 (290)
+++..++++.++-.+..
T Consensus 81 iL~~~~~~~~vil~GpS 97 (147)
T PF04016_consen 81 ILELARNAREVILYGPS 97 (147)
T ss_dssp HHHHTTTSSEEEEESCC
T ss_pred HHHhCccCCeEEEEecC
Confidence 34445555655555433
|
; PDB: 3L5O_B 3NPG_A. |
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.035 Score=50.02 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=35.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||+++++.|...|++|++.+|++++.+++
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~ 47 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAV 47 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 688999996 8999999999999999999999987765543
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.026 Score=48.37 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|+| .|.||..+++.|...|++|.+.+|++++.+.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~ 41 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQA 41 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 57888988 5999999999999999999999998765443
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.019 Score=52.78 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=46.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHC-CCeEEEEeCCccchhhHHhC-------CCc-------cCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISL-------GAK-------YQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~-g~~V~~~d~~~~~~~~~~~~-------g~~-------~~~~~~~~~~~aDivv~~ 134 (290)
.|||.|.| +|.||+.+++.|... |++|.+.+++.++...+... ++. -..++.++++++|+||-+
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHl 93 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINL 93 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEc
Confidence 68999999 599999999999987 59999999876544332211 111 112355667789987765
Q ss_pred e
Q 022909 135 L 135 (290)
Q Consensus 135 ~ 135 (290)
.
T Consensus 94 A 94 (386)
T PLN02427 94 A 94 (386)
T ss_pred c
Confidence 4
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.032 Score=47.20 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=34.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
+++|.|+| .|.+|+.+++.|...|++|.+.+|++++...+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA 46 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence 58899998 49999999999999999999999987654443
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.012 Score=53.95 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=43.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH----h---CCCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI----S---LGAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~----~---~g~~~~~~~~~~~~~aDivv~~~ 135 (290)
+|+|.|.|. |.||+.+++.|.+.|++|++.+|......... + ..+....++..+++++|+||-+.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 789999996 99999999999999999999998643211000 0 01111122344566789888665
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.029 Score=47.80 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=33.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
++++.|.|. |.||..+++.|...|++|++.+|+++..+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~ 44 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAE 44 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 688999996 99999999999999999999999865443
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.031 Score=52.88 Aligned_cols=68 Identities=24% Similarity=0.430 Sum_probs=50.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc---------------------chhhHHhCCCccC------C--CH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS---------------------KCDPLISLGAKYQ------P--SP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~---------------------~~~~~~~~g~~~~------~--~~ 121 (290)
+++|.|||.|..|...|..|+..|++|+++++.+. ..+.+.+.|+... . ..
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~ 220 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISL 220 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCH
Confidence 78999999999999999999999999999987652 1233444554321 1 34
Q ss_pred HHHhhcCCeEEEEeCCh
Q 022909 122 DEVAASCDVTFAMLADP 138 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~~ 138 (290)
+++....|.|++++...
T Consensus 221 ~~~~~~~D~vilAtGa~ 237 (467)
T TIGR01318 221 DDLLEDYDAVFLGVGTY 237 (467)
T ss_pred HHHHhcCCEEEEEeCCC
Confidence 55556799999998654
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.051 Score=49.49 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=54.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-HhCCCccC---CC---HHHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQ---PS---PDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~---~~---~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
+.+|.|.|.|.+|...++.++..|.+|++.+.+.++...+ ++.|+..+ .+ ..+.....|+|+-++..+.....
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~~~~ 263 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHALGP 263 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHHHHH
Confidence 6899999999999999999999999988887776554333 34554211 11 11222235777766543222222
Q ss_pred HhcccccccccCCCCCEEEEec
Q 022909 144 VACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s 165 (290)
.++.++++..++.++
T Consensus 264 -------~~~~l~~~G~iv~vG 278 (360)
T PLN02586 264 -------LLGLLKVNGKLITLG 278 (360)
T ss_pred -------HHHHhcCCcEEEEeC
Confidence 234566666666554
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.04 Score=47.56 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||+++++.|.+.|++|++.+|++++.+++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAV 46 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 688999985 9999999999999999999999987655443
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.033 Score=50.86 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=38.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|.|.|.+|...++.++..|. +|++.++++++.+.+++.|+
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga 237 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA 237 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence 5789999999999999999999998 69999999888776666655
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.027 Score=48.46 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=34.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.| .|.||+.+++.|...|++|.+.+|++++.+.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~ 42 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAF 42 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57899998 69999999999999999999999987655443
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.32 Score=42.40 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=31.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|+|+|.+|..++..|+..|. +++++|.+.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 6899999999999999999999995 899998764
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.29 Score=43.41 Aligned_cols=201 Identities=11% Similarity=0.107 Sum_probs=112.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhC--------------------CC----ccCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL--------------------GA----KYQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~--------------------g~----~~~~~~~~~~ 125 (290)
..++.++|+|...-.+|.-+...| +++-+++|-..+.+.+.+. |- .+..++.++.
T Consensus 4 m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~~ 83 (431)
T COG4408 4 MLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQAV 83 (431)
T ss_pred ccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHhh
Confidence 578999999999999999999887 5888888755444444331 10 1234566677
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCC--CEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCC------Cc
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPG--KGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGS------KK 196 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~--~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~------~~ 196 (290)
.+-+-+|++||. ++...++..- -.+.++.= .++|+-+-|+-.....+...+. ..+.+++ ....+. +.
T Consensus 84 ~dwqtlilav~a-DaY~dvlqqi--~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~-~daeViS~SsY~~dTk~id~~~ 159 (431)
T COG4408 84 GDWQTLILAVPA-DAYYDVLQQI--PWEALPQVKSVILISPTFGSNLLVQNLMNKAG-RDAEVISLSSYYADTKYIDAEQ 159 (431)
T ss_pred chhheEEEEeec-HHHHHHHhcC--CHhHhccccEEEEecccccccHHHHHHHhhhC-CCceEEEeehhcccceeecccC
Confidence 778899999987 5555665210 12223332 3444444344333333333222 2233333 111111 11
Q ss_pred c------ccCCceEEEec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHH-----------------HHHHH------
Q 022909 197 P------AEDGQLIFLAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAA-----------------MKLVV------ 244 (290)
Q Consensus 197 ~------~~~~~~~~~~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~-----------------~k~~~------ 244 (290)
. +.+.. +..| ++....+.+.+++...|..+..+..+-.++- ++.+.
T Consensus 160 p~~alTkavKkr--iYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p 237 (431)
T COG4408 160 PNRALTKAVKKR--IYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRP 237 (431)
T ss_pred cchHHHHHHhHh--eeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCC
Confidence 1 01111 2222 3446677899999999887776654322221 11110
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhh
Q 022909 245 --------------NMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQS 277 (290)
Q Consensus 245 --------------n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~ 277 (290)
..+..+...+.|.+++..+.|+..=.+..+++.
T Consensus 238 ~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~d 284 (431)
T COG4408 238 QYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLND 284 (431)
T ss_pred ceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhcc
Confidence 112222267889999999999988777777653
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.026 Score=50.53 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=35.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|+ |.||+++|+.|++.|++|.+.+|++++.+..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~ 93 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDV 93 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence 688999995 8999999999999999999999998766544
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.048 Score=46.80 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=33.7
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|.| .|.||+.+++.|...|++|.+.++++++.+.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~ 49 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSK 49 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 78999999 5999999999999999999999987654433
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.031 Score=47.92 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=34.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
+++|.|.| .|.||+.+++.|...|++|.+.+|++++.+.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~ 44 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDE 44 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 68899998 5999999999999999999999998765443
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.022 Score=53.85 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=45.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc-chh---hHHhCCCcc-CCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCD---PLISLGAKY-QPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~-~~~---~~~~~g~~~-~~~~~~~~~~aDivv~~~ 135 (290)
+++|+|+|+|.-|.+.++.|...|.+|+++|.++. ... ++.+.+... ....++.+.+.|+||..-
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECC
Confidence 68999999999999999999999999999996532 211 233322211 122345567899988753
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.023 Score=51.53 Aligned_cols=65 Identities=28% Similarity=0.349 Sum_probs=45.3
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----CCc-------cCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAK-------YQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~-------~~~~~~~~~~~aDivv~~~ 135 (290)
+|+|.|.| +|.||+.+++.|...|++|++.+|++.+...+... ++. ....+++++++.|+||-+.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 87 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA 87 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence 79999999 69999999999999999999988876543332210 111 1112455666788776554
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.024 Score=57.35 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=67.8
Q ss_pred CCeEEEEcccHhHHHH-HHHHHHCCCeEEEEeCCcc-chhhHHhCCCccC-CCHHHHhhcCCeEEEEeC---ChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPM-AQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQ-PSPDEVAASCDVTFAMLA---DPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~l-a~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~-~~~~~~~~~aDivv~~~p---~~~~~~~~ 144 (290)
.++|.|||.|..|.+. |+.|...|++|.++|.++. ..+.+.+.|+... ....+.+.++|+||..-. .++.....
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a 83 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSA 83 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHH
Confidence 4679999999999997 9999999999999997643 2334555666543 223355678999886532 22222222
Q ss_pred hcc------ccccccc-CCCCCEE-EEecCCChhHHHHHHHHHHHcCC
Q 022909 145 ACG------KHGAASG-MGPGKGY-VDVSTVDGDTSKLINGHIKATGA 184 (290)
Q Consensus 145 ~~~------~~~~~~~-~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~ 184 (290)
... ..+++.. ++...+| |-=|.|...++.-+...|+..+.
T Consensus 84 ~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 84 KSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred HHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 100 0112222 2322343 33345556666666667776553
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.038 Score=53.54 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=46.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchh-hHHhCCC-ccCCC---HHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGA-KYQPS---PDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~-~~~~~g~-~~~~~---~~~~~~~aDivv~~~p 136 (290)
.+||||||.|..|+.+++.+.+.|++|.++|.+++... .+.+.-+ ....+ +.++.+++|+|.....
T Consensus 22 ~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 22 ETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 68999999999999999999999999999998875321 1111111 11234 4445677898866543
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.034 Score=47.72 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||..+++.|...|++|.+.+|++++.++.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAV 47 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence 688999996 9999999999999999999999988654443
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.035 Score=47.05 Aligned_cols=40 Identities=10% Similarity=0.235 Sum_probs=34.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. +.||+++++.|...|++|.+.+|++++.++.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~ 45 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDT 45 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 688999996 6699999999999999999999988765544
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.047 Score=47.25 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=32.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
+++|.|.| .|.||+.+++.|.+.|++|.+.+|++++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~ 40 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPAR 40 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence 57899998 5999999999999999999999998654
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.061 Score=46.70 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||+.+++.|...|++|++.+|++++.+.+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~ 43 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDL 43 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 588999995 9999999999999999999999987665444
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.049 Score=48.58 Aligned_cols=89 Identities=25% Similarity=0.287 Sum_probs=59.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-CC----H-HHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-PS----P-DEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~~----~-~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
+.+|.|+|.|.+|+.+++.++..|.+|++.+++.++.+.+.+.|.... .. . ....+..|+++-++........
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~- 241 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAAEA- 241 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHHHHH-
Confidence 578999999999999999999999999999998877766655443211 10 0 0011347888776544333222
Q ss_pred hcccccccccCCCCCEEEEecC
Q 022909 145 ACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++.++++..+++++.
T Consensus 242 ------~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 242 ------ALGGLRRGGRIVLVGL 257 (330)
T ss_pred ------HHHhcccCCEEEEECC
Confidence 2456777777777753
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.042 Score=47.12 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=34.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.+
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~ 46 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQL 46 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 578999985 8999999999999999999999987665443
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.037 Score=47.45 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=29.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-----------CeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-----------CDVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-----------~~V~~~d~~ 103 (290)
..+|.|||+|.+|..+++.|+..| .+++++|.+
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 689999999999999999999763 288999875
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.052 Score=49.75 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=55.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccC---CC---HHHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQ---PS---PDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~---~~---~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
+.+|.|.|.|.+|...++.++..|.+|++.+++.++ .+.+++.|+..+ .+ ..+.....|+|+-++..+.....
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~~~~ 258 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLP 258 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHHHHH
Confidence 689999999999999999999999999988877544 333344554321 11 11122235777777644322222
Q ss_pred HhcccccccccCCCCCEEEEec
Q 022909 144 VACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s 165 (290)
. ++.++++..++..+
T Consensus 259 ~-------~~~l~~~G~iv~vG 273 (375)
T PLN02178 259 L-------FSLLKVSGKLVALG 273 (375)
T ss_pred H-------HHhhcCCCEEEEEc
Confidence 2 34456666666554
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.058 Score=49.46 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=38.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+|.|.+|...++.++..|. +|++.++++++.+.+++.|.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence 6899999999999999999999998 69999998887776666554
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.021 Score=48.88 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=36.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
.++|.|.|. |.||+.+++.|...|++|++.+|++++.+.+.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS 44 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh
Confidence 468999997 999999999999999999999998876655443
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.043 Score=47.08 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=33.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
++++.|.|. |.||+.+++.|.+.|++|.+.+|++++.+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~ 48 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLA 48 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 689999995 99999999999999999999999876543
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.044 Score=50.78 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=42.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHh--hcCCeEEEE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA--ASCDVTFAM 134 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~--~~aDivv~~ 134 (290)
|+|.|+|.|..|.++|+.|. .|.+|.++|..+.... ..+.|+... + ++.+ +++|+||..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~s 61 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPS 61 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEEC
Confidence 57999999999999999999 9999999996543221 233355543 2 2233 468987765
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.044 Score=47.35 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=34.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||..+++.|...|++|++.+|++++.+.+
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~ 50 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEV 50 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 689999985 7899999999999999999999987654443
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.02 Score=52.07 Aligned_cols=87 Identities=14% Similarity=0.245 Sum_probs=50.9
Q ss_pred CeEEEEcc-cHhHHHHHH-HHHHCCCe---EEEEeCCc--cchhhHHhCCCccC--CCHHHHhhcCCeEEEEeCChhHHH
Q 022909 72 GRIGFLGM-GIMGTPMAQ-NLLKAGCD---VTVWNRTK--SKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~-~l~~~g~~---V~~~d~~~--~~~~~~~~~g~~~~--~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
++|+|||+ |.+|+.+.+ .+....++ +..+.... .+...+........ .+. +.++++|+++.++|.. ..+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~-~~~~~~Divf~a~~~~-~s~ 79 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDI-DALKKLDIIITCQGGD-YTN 79 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCCh-hHhcCCCEEEECCCHH-HHH
Confidence 68999995 999999998 55555565 55554431 11111211111112 223 3457899999999763 444
Q ss_pred HHhcccccccccCCCC--CEEEEecC
Q 022909 143 DVACGKHGAASGMGPG--KGYVDVST 166 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~--~~lin~s~ 166 (290)
.+. . ...+.| +++||.|+
T Consensus 80 ~~~---~---~~~~aG~~~~VID~Ss 99 (369)
T PRK06598 80 EVY---P---KLRAAGWQGYWIDAAS 99 (369)
T ss_pred HHH---H---HHHhCCCCeEEEECCh
Confidence 443 1 122456 67899873
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.062 Score=46.33 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=35.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
++++.|.|. |.||..+++.|...|++|++.+|++++.+.+.
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLR 47 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 688999985 89999999999999999999999876655543
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.1 Score=45.22 Aligned_cols=90 Identities=20% Similarity=0.190 Sum_probs=61.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhCC-CccCCCHH-HHh--hcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLG-AKYQPSPD-EVA--ASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~g-~~~~~~~~-~~~--~~aDivv~~~p~~~~~~~~~ 145 (290)
+.+|.|.|.|.+|..+.+.++..|.+ |++.++++++.+...+.| ........ +.. ...|+++.++........
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~-- 175 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPSALET-- 175 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChHHHHH--
Confidence 68899999999999999999999998 999988887766555555 11111111 111 247888887654333322
Q ss_pred cccccccccCCCCCEEEEecCC
Q 022909 146 CGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~ 167 (290)
.++.++++..+++++..
T Consensus 176 -----~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 176 -----ALRLLRDRGRVVLVGWY 192 (277)
T ss_pred -----HHHHhcCCcEEEEEecc
Confidence 25667888888877643
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.052 Score=46.46 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||+.+++.|...|++|.+.+|++++.+..
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~ 44 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNEL 44 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHH
Confidence 789999995 8999999999999999999999987665443
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.052 Score=46.63 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=33.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
+++|.|.|. |.||+.+++.|...|++|.+.+|+..+.+.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~ 41 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAAN 41 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 578999985 899999999999999999999998755443
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.057 Score=45.89 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=57.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+|.+.|-|+ ..||.++|+.|...|++|++..|+.++++++++. +.+ ..+..+.+=+...+++...+ +
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~-------~~~--~~~~~~~~DVtD~~~~~~~i---~ 73 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADE-------IGA--GAALALALDVTDRAAVEAAI---E 73 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHh-------hcc--CceEEEeeccCCHHHHHHHH---H
Confidence 566777785 7899999999999999999999999888877652 111 23344444444555666666 2
Q ss_pred cccccCCCCCEEEEecCCC
Q 022909 150 GAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~ 168 (290)
.+.+...+=.++||.+...
T Consensus 74 ~~~~~~g~iDiLvNNAGl~ 92 (246)
T COG4221 74 ALPEEFGRIDILVNNAGLA 92 (246)
T ss_pred HHHHhhCcccEEEecCCCC
Confidence 2334444445677776433
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.042 Score=47.12 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||.++++.|.+.|++|.+.+|++++.+..
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 49 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKL 49 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 688999996 8999999999999999999999987655443
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.054 Score=46.28 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=33.4
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
|+|.|+| .|.+|..+++.|...|++|++.+|++++.+.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 40 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQEL 40 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 5788998 59999999999999999999999987655443
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.047 Score=49.61 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=54.3
Q ss_pred CCeEEEEccc----------HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGMG----------IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G----------~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
+++|||+|+- .-...++++|...|.+|.+||+-..........++...++.++++++||+++++... ++
T Consensus 310 Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew-~e 388 (414)
T COG1004 310 GKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEW-DE 388 (414)
T ss_pred CcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccH-HH
Confidence 7999999963 345689999999999999999864321111112467889999999999999999754 55
Q ss_pred HHHH
Q 022909 141 AMDV 144 (290)
Q Consensus 141 ~~~~ 144 (290)
.+.+
T Consensus 389 f~~~ 392 (414)
T COG1004 389 FRDL 392 (414)
T ss_pred Hhcc
Confidence 5443
|
|
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.031 Score=49.71 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=48.8
Q ss_pred CCeEEEEcc---cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~---G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~ 134 (290)
+.||+++|- +++..+++..++.+|++|.++.+..-..+... .....++++++++++|+|...
T Consensus 156 g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~--~~~~~~d~~ea~~~aDvvyt~ 220 (305)
T PRK00856 156 GLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMP--EYGVHTDLDEVIEDADVVMML 220 (305)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccccc--ceEEECCHHHHhCCCCEEEEC
Confidence 789999997 58999999999999999999987543222111 135678999999999998763
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.093 Score=45.27 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=68.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHh----CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLIS----LGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~----~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
+++|.-+|+|. |. ++..+...|.. |+++|.++...+..++ .++.....+.+--...|+|+... .......++
T Consensus 120 ~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani-~~~~~~~l~ 196 (250)
T PRK00517 120 GKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANI-LANPLLELA 196 (250)
T ss_pred CCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcC-cHHHHHHHH
Confidence 68999999998 74 55556667764 9999999877655443 23310000000000478887654 334444554
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+++.+.++||..+|-. .......+.+.+.+.+.|.....
T Consensus 197 ---~~~~~~LkpgG~lils-gi~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 197 ---PDLARLLKPGGRLILS-GILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ---HHHHHhcCCCcEEEEE-ECcHhhHHHHHHHHHHCCCEEEE
Confidence 4567889998887743 33444566777888877766544
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.054 Score=46.41 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=34.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|.|. |.||+.+++.|...|++|.+++|+++..+.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~ 50 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEA 50 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 789999985 999999999999999999999998765443
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.026 Score=51.01 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=46.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchh-----hHHhC---------CCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD-----PLISL---------GAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~-----~~~~~---------g~~~~~~~~~~~~~aDivv~~~ 135 (290)
+++|.|.|. |.||+.+++.|...|++|.+.+|+.++.. .+... .+....+++++++.+|+||-+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A 89 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTA 89 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEec
Confidence 688999996 99999999999999999999998765321 11110 1111224566777889887765
Q ss_pred C
Q 022909 136 A 136 (290)
Q Consensus 136 p 136 (290)
.
T Consensus 90 ~ 90 (342)
T PLN02214 90 S 90 (342)
T ss_pred C
Confidence 3
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.046 Score=46.68 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=28.6
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
+|.|||+|.+|..+++.|...|. ++.++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999997 788888763
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.055 Score=48.57 Aligned_cols=89 Identities=25% Similarity=0.322 Sum_probs=57.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-C--C---HHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-P--S---PDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~--~---~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
+.++.|.|.|.+|..+++.++..|.+|++.++++++.+.+.+.|.... . + ..+.-...|+++.+++.......
T Consensus 170 g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~- 248 (337)
T cd05283 170 GKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASHDLDP- 248 (337)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcchHHH-
Confidence 678999999999999999999999999999988777666655543211 1 1 01112346777776654322222
Q ss_pred hcccccccccCCCCCEEEEecC
Q 022909 145 ACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++.++++..+++++.
T Consensus 249 ------~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 249 ------YLSLLKPGGTLVLVGA 264 (337)
T ss_pred ------HHHHhcCCCEEEEEec
Confidence 2345566666666643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.051 Score=47.43 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=32.7
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
|++++.|.|.|.||+++++.|. .|++|++.+|++++.+.
T Consensus 1 ~~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~ 39 (275)
T PRK06940 1 MKEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEA 39 (275)
T ss_pred CCCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHH
Confidence 3678888899999999999996 79999999998755433
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.18 Score=47.26 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=63.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHC--CCeEEEEeCCccch--hhHHhCCCccC-C-CHHHHhhcCCeEEEEeC---ChhHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKC--DPLISLGAKYQ-P-SPDEVAASCDVTFAMLA---DPESAM 142 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~--g~~V~~~d~~~~~~--~~~~~~g~~~~-~-~~~~~~~~aDivv~~~p---~~~~~~ 142 (290)
++|.|||.|..|.+.++.|... |++|.++|..+... +.+.+ |+... . ...+.+.++|+||..-. ..+...
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~ 86 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQ 86 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHH
Confidence 7899999999999999999987 58999999764321 23433 55442 1 12344678998876532 222232
Q ss_pred HHhcc------cccccccCCCCCEE-EEecCCChhHHHHHHHHHHHcCC
Q 022909 143 DVACG------KHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGA 184 (290)
Q Consensus 143 ~~~~~------~~~~~~~~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~ 184 (290)
..... ..+++..+.+..+| |-=|.|+..+..-+...|...+.
T Consensus 87 ~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~ 135 (438)
T PRK04663 87 QVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGV 135 (438)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCC
Confidence 22110 01222222233343 33334555555666666766544
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.014 Score=53.75 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=33.0
Q ss_pred CCCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 70 ~~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
.+++|.|+|. |.||+.+++.|...|++|.+.+|++.+
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~ 96 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG 96 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence 3789999995 999999999999999999999998643
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.045 Score=47.02 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=34.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|.| .|.||..+++.|.+.|++|++.+|+.++.+.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~ 51 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEE 51 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 68999998 5999999999999999999999998765443
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.053 Score=49.18 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=38.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+|.|.+|...++.++..|.+ |++.++++++.+.+++.|.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga 222 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA 222 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 68999999999999999999999985 8889998887776666554
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.061 Score=49.58 Aligned_cols=109 Identities=18% Similarity=0.106 Sum_probs=63.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc---CCCHHHH-----hhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY---QPSPDEV-----AASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~---~~~~~~~-----~~~aDivv~~~p~~~~~~ 142 (290)
+..+-|+|+|++|+.+++.|.+.|.++.+.+.+.. +...+.+... -.+.++. +++++.|+++.+.+.+..
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl 317 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL--EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNA 317 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchh--hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHH
Confidence 36699999999999999999999999998886532 2222222211 1122233 347899998887765544
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCc
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p 190 (290)
.+.. ..+.+.|+..+|-... + ++-.+.+++.|...+-.|
T Consensus 318 ~ivL----~ar~l~p~~kIIa~v~----~-~~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 318 FVVL----AAKEMSSDVKTVAAVN----D-SKNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHH----HHHHhCCCCcEEEEEC----C-HHHHHHHHhcCCCEEECH
Confidence 4431 1344555544432212 1 122344555566554433
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.05 Score=53.66 Aligned_cols=68 Identities=24% Similarity=0.468 Sum_probs=49.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc---------------------hhhHHhCCCccC--------CCH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK---------------------CDPLISLGAKYQ--------PSP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~~~ 121 (290)
+++|.|||.|..|...|..|+..|++|+++++++.. .+.+.+.|+... .+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~ 272 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITL 272 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCH
Confidence 689999999999999999999999999999986531 122333444321 134
Q ss_pred HHHhhcCCeEEEEeCCh
Q 022909 122 DEVAASCDVTFAMLADP 138 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~~ 138 (290)
+++....|.|++++-..
T Consensus 273 ~~~~~~~DaVilAtGa~ 289 (652)
T PRK12814 273 EELQKEFDAVLLAVGAQ 289 (652)
T ss_pred HHHHhhcCEEEEEcCCC
Confidence 55555699999988643
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.053 Score=48.38 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=46.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh----C-----------CCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----L-----------GAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----~-----------g~~~~~~~~~~~~~aDivv~~ 134 (290)
+++|.|.| .|.||+.+++.|...|++|.+.+|++.+...... . .+.-..++++++++.|+|+.+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~ 84 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHT 84 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEe
Confidence 68999999 5999999999999999999988887654322111 0 111223456677788988776
Q ss_pred eC
Q 022909 135 LA 136 (290)
Q Consensus 135 ~p 136 (290)
..
T Consensus 85 A~ 86 (325)
T PLN02989 85 AS 86 (325)
T ss_pred CC
Confidence 53
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.019 Score=52.73 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=33.2
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
+.++|.|||.|..|.++|..|+..|++|+++++++.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 368999999999999999999999999999998764
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.061 Score=48.48 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=34.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
+++|.|.|. |.||+.+++.|.+.|++|.+.+|++++.+.
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~ 47 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEA 47 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 578999985 999999999999999999999998765544
|
|
| >COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.023 Score=50.30 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=26.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC--CeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNR 102 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~ 102 (290)
.||||=|+|+||+.+++.+...+ ++|.+.+-
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd 34 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND 34 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence 68999999999999999999875 78776654
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.067 Score=46.49 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=32.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
++++.|.|. |.||+++++.|...|++|++.+|+ ++.+
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~ 43 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVS 43 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHH
Confidence 688999986 899999999999999999999998 4433
|
|
| >PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.17 Score=37.82 Aligned_cols=99 Identities=10% Similarity=0.068 Sum_probs=64.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCCh-----hHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP-----ESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~-----~~~~~~~ 145 (290)
-+||.|+|-|.++..+.+.+++.|+++.+.+.++++.. . -...+|-++.--|.+ ...+.++
T Consensus 2 ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s------------~--~~~~ad~~~~~~~~~~~~~yl~~e~I~ 67 (110)
T PF00289_consen 2 IKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVS------------T--HVDMADEAYFEPPGPSPESYLNIEAII 67 (110)
T ss_dssp SSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTG------------H--HHHHSSEEEEEESSSGGGTTTSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhccc------------c--cccccccceecCcchhhhhhccHHHHh
Confidence 48999999999999999999999999887776665321 1 134566665442222 1222222
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeC
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~ 189 (290)
. +. .+.+...+.-+-+......++.+.+.+.|+.|++.
T Consensus 68 ~----ia--~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp 105 (110)
T PF00289_consen 68 D----IA--RKEGADAIHPGYGFLSENAEFAEACEDAGIIFIGP 105 (110)
T ss_dssp H----HH--HHTTESEEESTSSTTTTHHHHHHHHHHTT-EESSS
T ss_pred h----Hh--hhhcCcccccccchhHHHHHHHHHHHHCCCEEECc
Confidence 0 01 12255556666777777888999998889988764
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 290 | ||||
| 3pdu_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 3e-57 | ||
| 3pef_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 6e-57 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 1e-53 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 1e-47 | ||
| 1vpd_A | 299 | X-Ray Crystal Structure Of Tartronate Semialdehyde | 3e-23 | ||
| 2i9p_A | 319 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 6e-22 | ||
| 2gf2_A | 296 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 9e-22 | ||
| 1yb4_A | 295 | Crystal Structure Of The Tartronic Semialdehyde Red | 2e-21 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 1e-18 | ||
| 4dll_A | 320 | Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Re | 5e-16 | ||
| 4gbj_A | 297 | Crystal Structure Of Nad-Binding 6-Phosphogluconate | 4e-13 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 8e-12 | ||
| 3q3c_A | 299 | Crystal Structure Of A Serine Dehydrogenase From Ps | 1e-11 | ||
| 3obb_A | 300 | Crystal Structure Of A Possible 3-Hydroxyisobutyrat | 1e-11 | ||
| 2cvz_A | 289 | Structure Of Hydroxyisobutyrate Dehydrogenase From | 6e-10 | ||
| 3qha_A | 296 | Crystal Structure Of A Putative Oxidoreductase From | 4e-08 | ||
| 3g0o_A | 303 | Crystal Structure Of 3-Hydroxyisobutyrate Dehydroge | 1e-06 | ||
| 2zyg_A | 480 | Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas | 5e-06 | ||
| 3fwn_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 5e-06 | ||
| 2zya_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 6e-06 |
| >pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde Reductase [salmonella Typhimurium Lt2] Length = 299 | Back alignment and structure |
|
| >pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319 | Back alignment and structure |
|
| >pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296 | Back alignment and structure |
|
| >pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
| >pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase From Polaromonas Sp. Js666 Length = 320 | Back alignment and structure |
|
| >pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate Dehydrogenase From Dyadobacter Fermentans Length = 297 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From Pseudomonas Aeruginosa Pao1 In Complex With Nad Length = 299 | Back alignment and structure |
|
| >pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 Length = 300 | Back alignment and structure |
|
| >pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Mycobacterium Avium 104 Length = 296 | Back alignment and structure |
|
| >pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase (Ygbj) From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
| >pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480 | Back alignment and structure |
|
| >pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 1e-81
Identities = 106/177 (59%), Positives = 131/177 (74%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+ GF+G+GIMG+ MA+NL+KAGC VT+WNR+ K + L +LGA+ +P EV SC VTF
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTF 62
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
AMLADP +A +V GKHG G+G G+GYVD+STVD TS+ I + A G FLEAPVS
Sbjct: 63 AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVS 122
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
GSKKPAEDG LI LAAGD++LY+ P + MGK +LGDVG GA MKLVVNM+MG
Sbjct: 123 GSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMG 179
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 2e-81
Identities = 89/177 (50%), Positives = 120/177 (67%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+IGFLG+G+MG+ + NLLK G VTVWNRT KCD I GA+ +P EV ++CD+TF
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
A ++DP++A D+ G G G+ PGK YVD+STVD DT + I + G FLEAPVS
Sbjct: 92 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
G+++ + DG L+ LAAGD+ LY + MGK+ F+LG+VGN A M L+VNM+ G
Sbjct: 152 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQG 208
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 2e-81
Identities = 104/177 (58%), Positives = 121/177 (68%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+GFLG+GIMG M+ NLLK G VTVWNRT SKCD L+ GA SP EV C T
Sbjct: 23 EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 82
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
AML+DP +A+ V K G + GKGY+D+STVD +TS IN I G F+E PVS
Sbjct: 83 AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVS 142
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
GSKKPAEDGQLI LAAGDK+L+ P D++GK FYLG VGNGA MKL+VNMIMG
Sbjct: 143 GSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMG 199
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 8e-81
Identities = 105/177 (59%), Positives = 129/177 (72%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
GFLG+GIMG PMA NL++AG DVTVWNR +KC PL++LGA+ SP EV A+CD+T
Sbjct: 3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITI 62
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
AMLADP +A +V G +G G+G G+GY+D+STVD +TS I + A G FLEAPVS
Sbjct: 63 AMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVS 122
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
G+KKPAEDG LI LAAGD+SL+ P +GK +LG+VG GA MKLVVNMIMG
Sbjct: 123 GTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMG 179
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 5e-71
Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 3/187 (1%)
Query: 63 VSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPD 122
+S + + +G+G MGT MAQ LLK G V +WNR+ K L++ GA S
Sbjct: 1 MSLSDESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVK 60
Query: 123 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT 182
++ T +L D + +V G G A + + VD +T D + G +
Sbjct: 61 AALSASPATIFVLLDNHATHEV-LGMPGVARAL-AHRTIVDYTTNAQDEGLALQGLVNQA 118
Query: 183 GASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKL 242
G +++ + + + + GD+ + LL+ + +L A
Sbjct: 119 GGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPW-DEALAFAT 177
Query: 243 VVNMIMG 249
V++
Sbjct: 178 VLHAHAF 184
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 7e-61
Identities = 63/177 (35%), Positives = 99/177 (55%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
++GF+G+GIMG PM++NLLKAG + V +R +I+ GA+ + +A CDV
Sbjct: 7 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 66
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
ML + +VA G++G G PG +D+S++ S+ I+ +KA G L+APVS
Sbjct: 67 TMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVS 126
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
G + A DG L + GDK++++ L+ M S + GD+G G KL +I+
Sbjct: 127 GGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVA 183
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 1e-59
Identities = 57/177 (32%), Positives = 98/177 (55%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+IGF+G+G MG PMA NLLK G V ++ ++ +++ GA+ + +VAA+ D+ F
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
L + V G G S G VD+S+V ++ + G +++APVS
Sbjct: 66 TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVS 125
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
G K AE G L + ++++ + P+L ++GK +++GD G G A+K+V N+++G
Sbjct: 126 GGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLG 182
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 3e-57
Identities = 62/177 (35%), Positives = 97/177 (54%), Gaps = 1/177 (0%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
++GF+G+GIMG+PMA NL +AG + V D L+SLGA + +V D+ F
Sbjct: 5 KLGFIGLGIMGSPMAINLARAGHQLHVTTIGPVA-DELLSLGAVNVETARQVTEFADIIF 63
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
M+ D DV G+HG A GK VD+S++ +K + GA +L+APVS
Sbjct: 64 IMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVS 123
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
G + A +G L + G++ +++ V PL DI+GK+ +G G+G K+ +I+
Sbjct: 124 GGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVA 180
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 4e-57
Identities = 58/177 (32%), Positives = 88/177 (49%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+GF+G+G MG PMA+NL+K G + +++ C G + SP +VA D
Sbjct: 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRII 61
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
ML +A++ G +G + G +D ST+D SK + ++ GA F++APVS
Sbjct: 62 TMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVS 121
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
G A G L F+ G + + LL MG + Y G VG G A K+ NM++
Sbjct: 122 GGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLA 178
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 6e-56
Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 2/177 (1%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+I FLG G MG PMA+ L +AG + VWNRT ++ L +LGA A D+
Sbjct: 33 KITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVV 92
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
+ML + DV + G A+ M PG ++D++++ ++ + A G + L+ PVS
Sbjct: 93 SMLENGAVVQDVLFAQ-GVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVS 151
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
G AE G L+ +A G + + PLL + G++ ++G G+G KL MI+G
Sbjct: 152 GGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGRA-THVGPHGSGQLTKLANQMIVG 207
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 1e-54
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 2/179 (1%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA-KYQPSPDEVAASCDVT 131
+G +G+G MG A++ L+AG + C L++ GA S E A D
Sbjct: 9 HVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDAL 68
Query: 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 191
++ + V G+ G A M PG + ST+ ++ I + A + L+APV
Sbjct: 69 VILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPV 128
Query: 192 SGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDV-GNGAAMKLVVNMIMG 249
SG A G++ +A+G ++ + + P+LD + + + + D G G+ +K++ ++ G
Sbjct: 129 SGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAG 187
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 6e-53
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 4/177 (2%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
++G++G+G MG PMA + + VTV++ PL GA S +VAA+ +
Sbjct: 17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHI 76
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
+L D V A PG ST+ T+ + +KA ++APVS
Sbjct: 77 TVLDDA----QVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVS 132
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
G A G+L + D+ +Y + P + G+ G G MKL NM+
Sbjct: 133 GGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTF 189
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 1e-47
Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 7/180 (3%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKC--DPLISLGAKYQPSPDEVAASCD 129
++GF+G G + +A L +AG D+ ++ ++ LG + S EVA CD
Sbjct: 26 KLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECD 85
Query: 130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189
V F+++ A++VA A + G Y D ++ + I I S A
Sbjct: 86 VIFSLVTAQA-ALEVA---QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYA 141
Query: 190 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
V+ G + L A + G+VG A +K+ + ++
Sbjct: 142 AVAVMSAVKPHGHRVPLVVDGDGARRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLK 201
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 1e-46
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 6/177 (3%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
++ F+G+G MG PMA +L + VWNRT K + P E A V F
Sbjct: 3 KVAFIGLGAMGYPMAGHLARRF-PTLVWNRTFEKALRHQEEFGS-EAVPLERVAEARVIF 60
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
L +V + G +VD ++ + + S+ + ++ G ++L+APVS
Sbjct: 61 TCLPTTR---EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVS 117
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
G AE G L + G + V P L K ++G VG G A+K + N ++
Sbjct: 118 GGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLA 173
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 1e-37
Identities = 35/185 (18%), Positives = 68/185 (36%), Gaps = 15/185 (8%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQP------SPDEVA 125
I F+G G +A L + ++ + +L A+
Sbjct: 26 TIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGI 85
Query: 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 185
A DV +++ + VA AA + ++D+++V DT L G I S
Sbjct: 86 ACADVVLSLVV-GAATKAVA---ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGS 141
Query: 186 FLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS-RFYLGDVGNGAAMKLVV 244
F+E V P + I +A VA L+ +G + G +++K++
Sbjct: 142 FVEGAVMARVPPYAEKVPILVAGRRAV---EVAERLNALGMNLEAVGETPGQASSLKMIR 198
Query: 245 NMIMG 249
++++
Sbjct: 199 SVMIK 203
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 4e-36
Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 11/177 (6%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
R+GF+G G + +A L G +V +S + + +E SC V
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
+ + P A+ A +G YVD++ + +T ++ + I+ G F++A +
Sbjct: 62 SAVT-PGVALGAA-----RRAGRHVRGIYVDINNISPETVRMASSLIEKGG--FVDAAIM 113
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
GS + I + D L + G+ +A+K++ +
Sbjct: 114 GSVRRKGADIRIIASGRDAE---EFMKLNRYGLNIEVRGREPGDASAIKMLRSSYTK 167
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 6e-19
Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 12/215 (5%)
Query: 45 TKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104
KPL L + A+ + ++G LG G +A L+ +G V V +R
Sbjct: 6 DKPLISLHL----VDSDSSLAKVPDEAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61
Query: 105 SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP-----ESAMDVACGKHGAASGMGPGK 159
+ L A+ +E +S +V F + S D GK +
Sbjct: 62 KRTARLFPSAAQ-VTFQEEAVSSPEVIFVAVFREHYSSLCSLSDQLAGKILVDVSNPTEQ 120
Query: 160 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQL-IFLAAGDKSLYNTVA 218
++ + + + A F + DG + + V+
Sbjct: 121 EHLQHRESNAEYLASLFPTCTVVKA-FNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVS 179
Query: 219 PLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCT 253
+ MG +G + + ++ + ++
Sbjct: 180 EMALAMGFMPVDMGSLASAWEVEAMPLRLLPAWKV 214
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 2e-18
Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 8/163 (4%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDV 130
I +G G + T +A+ L + G + V++RT+ L + A+Y EV +
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKL 71
Query: 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190
L D A ++ G G V + + GH+ G +
Sbjct: 72 YIVSLKDSAFA-ELL---QGIVEGKREEALMVHTAGSIP--MNVWEGHVPHYGVFYPMQT 125
Query: 191 VSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 233
S ++ F+ A + + + +
Sbjct: 126 FSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYDADS 168
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 5e-15
Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 7/188 (3%)
Query: 57 SSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 116
+ ++ ++ E G + G G G + +L+ G V +R L+ GA+
Sbjct: 5 CADEFPLTVDSSEKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSS-LLPRGAE 63
Query: 117 YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLIN 176
E A+ DV + E +A + +++
Sbjct: 64 V-LCYSEAASRSDVIVLAV-HREHYDFLAELADSLKGRVLIDVSNNQKMNQYPESNAEYL 121
Query: 177 GHIKAT---GASFLEAPVSGSKKPAEDGQL-IFLAAGDKSLYNTVAPLLDIMGKSRFYLG 232
+ +F + D +F+ D + V + +G + G
Sbjct: 122 AQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCGNDSKAKDRVMDIARTLGLTPLDQG 181
Query: 233 DVGNGAAM 240
+ +
Sbjct: 182 SLVAAKEI 189
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 5e-15
Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 10/161 (6%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+ F+G G + + L + +R+ + L + + ++ V F
Sbjct: 4 VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVF 63
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
++ D G + G S I + S
Sbjct: 64 VIVPDRYIKTVAN----------HLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSS 113
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 233
K Q++F GD+ V + + + F +
Sbjct: 114 LEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS 154
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 7e-11
Identities = 27/198 (13%), Positives = 49/198 (24%), Gaps = 20/198 (10%)
Query: 73 RIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 131
+ LG G MG + + + + + D L +G D DV
Sbjct: 13 TVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVV 71
Query: 132 FAMLADPESAM-DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLI------------NGH 178
L P++ + VA + PG + + +
Sbjct: 72 VLAL--PDNIIEKVA---EDIVPRVRPGTIVLILDAAAPYAGVMPERADITYFIGHPCHP 126
Query: 179 IKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGA 238
+ A A+ + L G + Y A + + M V
Sbjct: 127 PLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQ 186
Query: 239 AMKLVVNMIMGRSCTFSY 256
L + + F
Sbjct: 187 LAILEPGLSEMVAMPFVE 204
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Length = 209 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 5e-09
Identities = 21/171 (12%), Positives = 38/171 (22%), Gaps = 11/171 (6%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD--PLISLGAKYQPSPDEVAASCDV 130
I G G MG + N AG +VT + ++ + Y
Sbjct: 21 EITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAVPYPALAALAKQ---- 76
Query: 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190
A V + S+ + + + + A
Sbjct: 77 ----YATQLKGKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAA 132
Query: 191 VSGSKKPAEDGQL-IFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM 240
S + + +A D S L G + +
Sbjct: 133 TLQSGQVNGKEPTTVLVAGNDDSAKQRFTRALADSPLEVKDAGKLKRAREL 183
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 5e-09
Identities = 31/200 (15%), Positives = 55/200 (27%), Gaps = 32/200 (16%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL--------------ISLGAKYQ 118
+I LG G +G MA L G +VT+ R +
Sbjct: 21 KIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH 80
Query: 119 PSPDEVAASCDVTFAMLADPESAMDVA----------------CGKHGAASGMGPGKGYV 162
+ A+ + S++ + GM P V
Sbjct: 81 LAAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIANPLDFSHGMPPTLNPV 140
Query: 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQL-IFLAAGDKSLYNTVAPLL 221
+ ++ + + + A + A G +F++ D + VA LL
Sbjct: 141 NTDSLGEQIQRTFPEAKVVKTLNTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLL 200
Query: 222 DIMGKSR-FYLGDVGNGAAM 240
+G LGD+
Sbjct: 201 KSLGHQDVIDLGDITTARGA 220
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 5e-08
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVT 131
+IG +G+G M + + + L + ++ + + + + L Y S ++ D+
Sbjct: 5 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLV 64
Query: 132 F 132
Sbjct: 65 I 65
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 7e-08
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 57 SSQATGVSAEADELPG---RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL 113
++GV + L +IG +G+G MG M + L K G + V++ + L
Sbjct: 5 HHHSSGVDLGTENLYFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALERE 64
Query: 114 GAKYQPSPDEVAAS 127
G S +E A
Sbjct: 65 GIAGARSIEEFCAK 78
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 9e-08
Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 22/192 (11%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF- 132
+G +G+G+MG +A N+ + G V V+NRT SK + + A + + A F
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA 63
Query: 133 AMLADPESAMDVACGKHGAA-----SGMGPGKGYVDVSTVDGDTSKLING-----HIKAT 182
A L P A+ + + GAA + D+ VD + + ++A
Sbjct: 64 ASLKKPRKALILV--QAGAATDSTIEQLKKVFEKGDI-LVDTGNAHFKDQGRRAQQLEAA 120
Query: 183 GASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL-DIMGKSR------FYLGDVG 235
G FL +SG ++ A G F G S++ + P++ K+ G G
Sbjct: 121 GLRFLGMGISGGEEGARKGPAFF-PGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGG 179
Query: 236 NGAAMKLVVNMI 247
G+ +K+ N
Sbjct: 180 AGSCVKMYHNSG 191
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* Length = 212 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 5e-07
Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 19/187 (10%)
Query: 73 RIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSP------DEVA 125
R+ LG G +G +A L G ++ V +R + K + + + +E A
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDA 61
Query: 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST------VDGDTSKLINGHI 179
A + E A+D A V VS + S
Sbjct: 62 AEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE 121
Query: 180 KATGASFLEA----PVSGSKKPAEDGQL-IFLAAGDKSLYNTVAPLL-DIMGKSRFYLGD 233
+ A P + E + + D V L+ +I G G
Sbjct: 122 VLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGP 181
Query: 234 VGNGAAM 240
+ N +
Sbjct: 182 LSNSRLV 188
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Length = 247 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 3e-06
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAAS 127
+IGF+G G MG M ++ + + + G +EVA +
Sbjct: 4 QIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKN 63
Query: 128 CDVTF 132
D+
Sbjct: 64 ADILI 68
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 5e-06
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112
+IG +GM +MG +A N+ G V+++NR++ K + +I+
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIA 56
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 8e-06
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112
G +GM +MG +A N+ G V ++NRT SK + +
Sbjct: 7 NFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFK 46
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-05
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPD--EVAASCDV 130
+ LG+G +G +A+ G V V R + +G + + DV
Sbjct: 157 NVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDV 216
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Length = 322 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS--LGAKYQPSPDEVAA 126
+GF+G G + +A+ AG + + +G K P E
Sbjct: 24 SVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQ 83
Query: 127 SCDVTF 132
DV F
Sbjct: 84 HSDVLF 89
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Length = 450 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 3e-05
Identities = 24/123 (19%), Positives = 36/123 (29%), Gaps = 15/123 (12%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT- 131
+ LG G + P L +G VTV RT L + S DV
Sbjct: 5 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA------GVQHSTPISLDVND 58
Query: 132 ----FAMLADPE---SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 184
A +A + S + S + K V S ++ K G
Sbjct: 59 DAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTS-YVSPAMMELDQAAKDAGI 117
Query: 185 SFL 187
+ +
Sbjct: 118 TVM 120
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 73 RIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 130
+G +G+G + +A+ + G + ++ + + +LGA+ S +E+A D
Sbjct: 165 VLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDC 223
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} Length = 262 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 4e-05
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASC 128
++GF+G+G MG+ +A + A ++ + +K Y S +E+A C
Sbjct: 6 KLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHC 59
Query: 129 DVTF 132
D+
Sbjct: 60 DIIV 63
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Length = 280 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 4e-05
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASC 128
I F+G G M + L+ G + V NR+ K D G + A +
Sbjct: 5 NITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNA 64
Query: 129 DVTF 132
DV
Sbjct: 65 DVVV 68
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 9e-05
Identities = 10/58 (17%), Positives = 22/58 (37%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 130
+G G G +G +A+ D+ ++ ++ S A + S D + +
Sbjct: 148 TLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQF 205
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 130
RIG LG+G +G +A G V WNR+ L + SP ++A DV
Sbjct: 173 RIGVLGLGQIGRALASRAEAFGMSVRYWNRS-----TLSGVDWIAHQSPVDLARDSDV 225
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112
I +G+ +MG + N+ G V +NRT SK D ++
Sbjct: 4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA 43
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 130
R+G +G+G +G +A+ C ++ ++R+ + Y S E+A++ D+
Sbjct: 166 RVGIIGLGRIGLAVAERAEAFDCPISYFSRS-----KKPNTNYTYYGSVVELASNSDI 218
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 116
G +G+ +MG + N G V +NRT+SK D ++ AK
Sbjct: 13 FGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAK 55
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Length = 341 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 67 ADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG----AKYQPSPD 122
++ + LG+G++G + ++L A V +NR++S + G A + +
Sbjct: 4 TKDISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQ 63
Query: 123 EVAASCDVTFAMLADPESAM 142
AA + LA P +A+
Sbjct: 64 RAAAEDALIV--LAVPMTAI 81
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 Length = 359 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 4e-04
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 6/76 (7%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA--KYQPSPDEVAASCDV 130
LG+G G A L G V W+ + + GA P A +
Sbjct: 6 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL 65
Query: 131 TFAMLADPESAMDVAC 146
T +D A+ A
Sbjct: 66 T----SDIGLAVKDAD 77
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} Length = 356 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 58 SQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG--A 115
S + I LG G GT +A L + G V +W+ D + + G
Sbjct: 16 ENLYFQSNAMEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNN 75
Query: 116 KYQPS---PDEVAASCDVTFAM 134
+Y P+ P+ + A CD+ ++
Sbjct: 76 RYLPNYPFPETLKAYCDLKASL 97
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 130
R+G GMG +G +A G + NR ++ + GA Y + D + + D+
Sbjct: 175 RLGIFGMGRIGRAIATRARGFGLAIHYHNR--TRLSHALEEGAIYHDTLDSLLGASDI 230
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Length = 144 | Back alignment and structure |
|---|
Score = 38.6 bits (91), Expect = 5e-04
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQPSPD--EVAASCD 129
+I +G G++ + +A VTV R +Y D + + D
Sbjct: 23 KILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNND 82
Query: 130 VTFA 133
V
Sbjct: 83 VIIT 86
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 6e-04
Identities = 12/67 (17%), Positives = 27/67 (40%)
Query: 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 131
G + G G +++ L G + +R + + + + GA+ P E + VT
Sbjct: 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVT 65
Query: 132 FAMLADP 138
+++
Sbjct: 66 HLLISTA 72
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.97 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.97 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.97 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.97 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.97 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.96 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.96 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.96 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.96 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.96 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.96 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.96 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.96 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.96 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.96 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.95 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.95 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.95 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.95 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.95 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.95 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.95 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.95 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.95 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.95 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.95 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.95 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.95 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.95 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.95 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.94 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.94 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.94 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.94 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.94 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.94 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.94 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.94 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.94 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.94 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.93 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 99.93 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.93 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.93 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 99.93 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.93 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.93 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.92 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.92 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.92 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.92 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.92 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.92 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.91 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.91 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.9 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.89 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.89 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.88 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.88 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.88 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.88 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.87 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.87 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.87 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.87 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.87 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.86 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.86 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 99.85 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.85 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.84 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.84 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.84 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.84 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.83 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.82 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.82 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.82 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.81 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.8 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.79 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.78 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.78 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.77 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.76 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.76 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.75 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.75 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.75 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.74 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.74 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.74 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.73 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.72 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.71 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.71 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.54 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.7 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.69 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.69 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.67 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.66 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.65 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 99.64 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 99.61 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.6 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 99.58 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.57 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.55 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.54 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.51 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.51 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.5 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.49 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 99.45 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 99.43 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.42 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.39 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 99.33 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.3 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 99.28 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.23 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 99.22 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 99.13 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 99.12 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.12 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 99.11 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.08 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 99.07 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 99.06 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 99.06 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 99.0 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 98.95 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.92 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.91 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.9 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.9 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 98.89 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.89 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.89 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.88 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.87 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.87 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.87 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.86 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.81 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.81 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.8 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.8 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.8 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.79 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.79 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.78 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.77 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.77 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.76 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.74 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.74 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.73 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.73 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.73 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.71 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.71 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.71 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.71 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.71 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.7 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.7 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.69 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.67 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.66 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.65 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.64 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.62 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.62 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.61 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.58 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 98.58 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 98.57 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.57 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.57 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.56 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.56 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.54 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.52 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.52 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 98.52 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.51 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.51 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 98.49 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.49 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.49 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.48 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.48 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.47 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 98.46 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.46 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.45 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.45 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.45 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.44 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 98.43 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 98.43 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.42 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.42 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.42 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 98.42 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.42 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 98.41 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 98.39 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.39 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 98.38 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.37 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.35 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 98.35 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.35 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.35 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.34 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 98.34 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.33 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.32 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 98.31 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.3 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 98.29 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 98.28 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 98.28 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 98.27 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.25 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 98.24 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 98.23 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.23 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.22 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.21 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 98.21 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.21 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.21 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.21 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 98.2 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 98.19 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 98.18 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.17 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 98.17 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.17 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 98.17 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.17 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.16 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 98.15 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.15 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 98.15 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.15 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 98.15 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.14 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.13 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.12 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 98.12 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 98.12 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 98.12 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 98.1 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 98.1 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 98.09 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 98.09 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 98.09 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.09 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 98.07 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 98.06 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.05 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 98.04 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 98.02 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.02 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 98.0 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.0 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.99 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.99 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 97.98 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 97.97 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.96 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.96 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.91 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.9 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.87 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.87 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.87 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.85 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.85 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.84 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.82 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.8 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.8 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.79 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.78 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.78 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.76 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 97.75 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.74 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.74 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.74 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.72 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.69 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.68 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 97.68 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.68 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.65 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.64 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.63 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 97.62 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.62 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.57 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.56 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.54 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 97.53 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.51 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 97.47 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.47 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.45 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.44 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.43 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 97.42 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.4 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.39 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.39 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 97.37 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 97.36 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 97.36 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 97.35 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.34 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 97.33 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.32 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.32 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 97.32 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 97.31 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 97.31 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 97.3 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 97.29 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.29 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.29 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 97.27 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.27 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 97.27 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 97.26 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.26 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.24 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.24 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 97.23 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.23 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.23 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 97.22 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 97.21 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 97.19 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 97.19 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.18 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.18 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 97.18 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.17 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.16 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 97.16 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 97.16 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.16 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.14 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 97.12 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 97.12 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 97.12 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.11 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 97.07 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 97.04 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.02 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 97.01 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 97.0 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.98 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.97 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.97 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.97 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 96.96 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 96.94 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.94 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.94 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.93 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.93 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 96.92 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.92 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 96.9 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 96.89 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 96.88 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.86 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.86 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.84 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.84 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 96.82 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.79 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 96.76 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 96.75 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.75 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 96.74 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.74 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.73 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 96.73 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 96.72 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.72 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.71 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.7 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.68 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.67 | |
| 2g0t_A | 350 | Conserved hypothetical protein; structural genomic | 96.67 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 96.66 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 96.66 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 96.64 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 96.64 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.63 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.63 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 96.63 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 96.62 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.6 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 96.57 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.57 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 96.56 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.56 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.56 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.54 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.52 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 96.52 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 96.51 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 96.5 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.5 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 96.5 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.49 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.49 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 96.48 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.48 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 96.47 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 96.47 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 96.47 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.47 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.47 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.47 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 96.46 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.45 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 96.44 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 96.44 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 96.44 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.44 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.43 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 96.43 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.42 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 96.42 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 96.41 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 96.41 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 96.4 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.39 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 96.39 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 96.39 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 96.38 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 96.38 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 96.37 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.37 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 96.37 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 96.36 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 96.36 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 96.35 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.34 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 96.33 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 96.33 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 96.33 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 96.32 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 96.32 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 96.31 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 96.3 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 96.29 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.29 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.29 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 96.28 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 96.27 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 96.26 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 96.26 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 96.25 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.24 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.24 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 96.24 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.24 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 96.23 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 96.23 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 96.23 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.23 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 96.23 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 96.23 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 96.22 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 96.21 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 96.21 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 96.2 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 96.2 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 96.2 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 96.19 |
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=273.76 Aligned_cols=216 Identities=27% Similarity=0.427 Sum_probs=206.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
++|||+||+|+||..+|++|.+.|++|++|||++++.+.+.+.|...++++.|+++++|+|++|+|.+++++.++.+...
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g 82 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG 82 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSS
T ss_pred cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999976566
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 230 (290)
+++.+++|.++||+|+..+.+.+++.+.+.++|++|+++|+++++..+..+.++++++|+++++++++++|+.+|.++++
T Consensus 83 ~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~ 162 (300)
T 3obb_A 83 LLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFH 162 (300)
T ss_dssp STTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEE
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHHHHHhCCCEEE
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 231 LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 231 ~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
+++.|.+..+|+++|++...+ .+++|++.++++.|+|++.+.++++.+..+||.+.
T Consensus 163 ~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~ 219 (300)
T 3obb_A 163 AGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALE 219 (300)
T ss_dssp EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHH
T ss_pred eCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHH
Confidence 999999999999999998887 99999999999999999999999999999998764
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=264.43 Aligned_cols=216 Identities=25% Similarity=0.401 Sum_probs=196.2
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
|.+||||||+|+||..+|++|.+.|++|++|||++++.+.+.+.|...++++.|+++++|+|++++|.+..++.++ ..
T Consensus 4 Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~--~~ 81 (297)
T 4gbj_A 4 MSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELF--SM 81 (297)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHS--CH
T ss_pred CCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHH--HH
Confidence 4578999999999999999999999999999999999999888899999999999999999999999998888887 34
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEE
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF 229 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~ 229 (290)
.+...++++.++||+|+..+.+.+++.+.+.+++++|+++|+++++..+..+.++++++++++++++++++|+.+|..++
T Consensus 82 ~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~~g~~i~ 161 (297)
T 4gbj_A 82 ELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVF 161 (297)
T ss_dssp HHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCSEEE
T ss_pred HHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHHHHHhhCCeE
Confidence 57788999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred EeCC-cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccC
Q 022909 230 YLGD-VGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDG 287 (290)
Q Consensus 230 ~~~~-~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~ 287 (290)
++++ .|.+..+|+++|.+...+ .+++|++.++++.|+|++++.+++..+..+||.+..
T Consensus 162 ~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~ 221 (297)
T 4gbj_A 162 DFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQN 221 (297)
T ss_dssp ECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHH
T ss_pred EecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhc
Confidence 9985 799999999999998888 999999999999999999999999999999987653
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=249.97 Aligned_cols=215 Identities=51% Similarity=0.789 Sum_probs=200.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+|+|+|||+|.||..+|+.|...|++|++|||++++.+.+.+.|+..+++++++++++|+|++++|.+..++.++++.++
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~ 100 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGG 100 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchh
Confidence 68999999999999999999999999999999999999888888988899999999999999999998888888755466
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 230 (290)
+.+.+++++++||+|+..+...+.+.+.+.+.+++|+++|+++++.....+++.++++++++.++.++++++.+|+++++
T Consensus 101 l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~g~~~~~ 180 (310)
T 3doj_A 101 VLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFY 180 (310)
T ss_dssp GGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEE
T ss_pred hhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhCCCEEE
Confidence 77889999999999999999999999999999999999999998888778888889999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 231 LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 231 ~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+++.+.+.+.|++.|.+.+.+ .+++|++.++++.|+|++++.+++......|+.+
T Consensus 181 ~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~ 236 (310)
T 3doj_A 181 LGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMF 236 (310)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHH
T ss_pred eCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHH
Confidence 999999999999999998888 9999999999999999999999999988888754
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=242.06 Aligned_cols=213 Identities=25% Similarity=0.334 Sum_probs=197.0
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+.++|+|||+|.||..+|+.|...|++|++|||++++.+.+.+.|+..+++++++++ +|+|++++|.+..++.++ +
T Consensus 14 ~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~---~ 89 (296)
T 3qha_A 14 EQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV---G 89 (296)
T ss_dssp -CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH---H
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH---H
Confidence 357999999999999999999999999999999999999998889998999999999 999999999988888887 5
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEE
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF 229 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~ 229 (290)
++.+.++++.++||+|+..+.+.+.+.+.+.+.+++|+++|+++++.....+.+.++++++++.++.++++++.+|++++
T Consensus 90 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~ 169 (296)
T 3qha_A 90 ELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVI 169 (296)
T ss_dssp HHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHHHEEEEE
T ss_pred HHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHHHcCCeE
Confidence 67788999999999999999999999999998899999999999988777888889999999999999999999999999
Q ss_pred EeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHH------HHHHhhcCCCCcccc
Q 022909 230 YLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTV------TMFLQSFSFGNLQYD 286 (290)
Q Consensus 230 ~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~------~~~i~~~~~gs~~~~ 286 (290)
++++.+.+.++|++.|.+.+.+ .+++|++.++++.|+|++++ .+++.....+||...
T Consensus 170 ~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~ 233 (296)
T 3qha_A 170 HAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD 233 (296)
T ss_dssp EEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS
T ss_pred EcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh
Confidence 9999999999999999998888 99999999999999999999 999998777775543
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=241.70 Aligned_cols=215 Identities=50% Similarity=0.826 Sum_probs=199.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~ 151 (290)
++|+|||+|.||..+++.|...|++|++|||++++.+.+.+.|+...++++++++++|+|++++|.+..++.++++.+++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l 81 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV 81 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence 68999999999999999999999999999999999988888888888999999999999999999988888888554667
Q ss_pred cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEe
Q 022909 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 152 ~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 231 (290)
.+.++++.++||+|++.+.+.+.+.+.+.+.+++|+++|+++++.....+.+.++++++++.++.++++++.+|++++++
T Consensus 82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~ 161 (287)
T 3pdu_A 82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHL 161 (287)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEEC
T ss_pred hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCEEEc
Confidence 78899999999999999999999999999889999999999988777788888899999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 232 GDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 232 ~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
++.+.+.+.|++.|.+.+.+ .+++|++.++++.|+|++++.+++..+..+||.+.
T Consensus 162 g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~ 217 (287)
T 3pdu_A 162 GEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFK 217 (287)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccChHHH
Confidence 99999999999999998888 99999999999999999999999999988887553
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=240.48 Aligned_cols=215 Identities=51% Similarity=0.823 Sum_probs=199.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~ 151 (290)
|+|+|||+|.||..+++.|...|++|++|||++++.+.+.+.|+..+++++++++++|+|++++|.+..++.++++.+++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l 81 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV 81 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence 78999999999999999999999999999999999998888889989999999999999999999888888888554667
Q ss_pred cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEe
Q 022909 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 152 ~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 231 (290)
.+.+++++++||+|+..+.+.+.+.+.+++.+++|+++|+++++.....+.+.++++++++.++.++++++.+|.+++++
T Consensus 82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~ 161 (287)
T 3pef_A 82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHL 161 (287)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEEC
T ss_pred hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCeEEe
Confidence 78899999999999999999999999999999999999999988877778888899999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 232 GDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 232 ~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
++.+.+.++|++.|.+.+.+ .+++|++.++++.|+|++++.+++......||.+.
T Consensus 162 g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~~ 217 (287)
T 3pef_A 162 GDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFA 217 (287)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHH
Confidence 99999999999999998887 99999999999999999999999999888887543
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=242.64 Aligned_cols=216 Identities=21% Similarity=0.367 Sum_probs=198.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc-CCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
.++|+|||+|.||..+|+.|...|++|++|||++++.+.+.+.|... .++++++++++|+|++++|.+..++.++++.+
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~ 86 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED 86 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence 57999999999999999999999999999999999988888888876 78899999999999999999888888875546
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEE
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF 229 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~ 229 (290)
++.+.+++++++||+|+..+...+.+.+.+.+.+++|+++|+++++.....+.+.++++++++.++.++++|+.+|++++
T Consensus 87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~ 166 (303)
T 3g0o_A 87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVY 166 (303)
T ss_dssp CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHHHHHHHEEEEE
T ss_pred hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHHHHHHHCCCEE
Confidence 77888999999999999999999999999988899999999999988888888889999999999999999999999999
Q ss_pred EeCC-cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 230 YLGD-VGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 230 ~~~~-~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
++++ .+.+.+.|++.|.+.+.+ .+++|++.++++.|++++++.+++.....+||.+.
T Consensus 167 ~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~ 225 (303)
T 3g0o_A 167 RISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFE 225 (303)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHH
T ss_pred ECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHH
Confidence 9998 999999999999998887 99999999999999999999999999988887654
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=243.63 Aligned_cols=214 Identities=28% Similarity=0.445 Sum_probs=198.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
.|+|+|||+|.||..+|+.|...|++|.+|||++++.+.+.+.|+..+++++++++++|+|++++|.+..++.++.+. +
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~-~ 109 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ-G 109 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT-C
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch-h
Confidence 589999999999999999999999999999999999888888888888999999999999999999988888888422 5
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 230 (290)
+.+.+++++++||+|++.+.+.+.+.+.+++.+++|+++|+++++.....+.+.+++++++++++.++++++.+ +.+++
T Consensus 110 ~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~-~~~~~ 188 (320)
T 4dll_A 110 VAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF-GRATH 188 (320)
T ss_dssp HHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH-EEEEE
T ss_pred HHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHhc-CCEEE
Confidence 67789999999999999999999999999999999999999998877778888899999999999999999999 88999
Q ss_pred eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 231 LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 231 ~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
+++.+.+.+.|++.|.+.+.+ .+++|++.++++.|+|++++.+++......||.+.
T Consensus 189 ~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~ 245 (320)
T 4dll_A 189 VGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQ 245 (320)
T ss_dssp EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHHH
T ss_pred eCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHHH
Confidence 999999999999999998888 99999999999999999999999999988887654
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=233.05 Aligned_cols=211 Identities=19% Similarity=0.265 Sum_probs=194.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcC---CeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASC---DVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~a---Divv~~~p~~~~~~~~~~~ 147 (290)
+|+|||||+|.||..+|+.|...|++|.+|||++++.+.+.+.|+..+.+++++++++ |+|++++|.+ .++.++
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl-- 98 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML-- 98 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH--
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH--
Confidence 6899999999999999999999999999999999998888888888888999999999 9999999987 888888
Q ss_pred cccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhC--
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMG-- 225 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G-- 225 (290)
+++.+.++++.+|||+|++.+.+..++.+.+.+++++|+++|+++++.....++ .+++++++++++.++++|+.+|
T Consensus 99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~-~im~GG~~~a~~~~~~ll~~lg~~ 176 (358)
T 4e21_A 99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLAPG 176 (358)
T ss_dssp -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC-EEEEESCHHHHHHTHHHHHHHSCC
T ss_pred -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC-eeeecCCHHHHHHHHHHHHHhccc
Confidence 457788999999999999999999999999999999999999999988877777 7889999999999999999999
Q ss_pred ------------------CcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHC----------------------
Q 022909 226 ------------------KSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFV---------------------- 264 (290)
Q Consensus 226 ------------------~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~---------------------- 264 (290)
..++++++.|+++.+|++.|.+.+.. .+++|++.++++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~ 256 (358)
T 4e21_A 177 IGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFY 256 (358)
T ss_dssp GGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------------CGGGC
T ss_pred cccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhc
Confidence 57889999999999999999998887 9999999999998
Q ss_pred --CCCHHHHHHHHhhcC-CCCcccc
Q 022909 265 --DFLINTVTMFLQSFS-FGNLQYD 286 (290)
Q Consensus 265 --G~~~~~~~~~i~~~~-~gs~~~~ 286 (290)
|+|.+++.+..+... .+||.+.
T Consensus 257 ~~~~d~~~i~~~~~~g~~~~s~~l~ 281 (358)
T 4e21_A 257 RYDLDLADITEVWRRGSVISSWLLD 281 (358)
T ss_dssp CCCCCHHHHHHHHTTTSTTCBHHHH
T ss_pred ccCCCHHHHHHHHhCccHHHHHHHH
Confidence 899999999999876 6787664
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=226.90 Aligned_cols=227 Identities=20% Similarity=0.264 Sum_probs=178.9
Q ss_pred cccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC--ccchhhHH
Q 022909 35 FRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT--KSKCDPLI 111 (290)
Q Consensus 35 ~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~--~~~~~~~~ 111 (290)
++..+++.|..+..+... .. ...++|+|||+|.||..+|+.|...|+ +|++|||+ +++.+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~-~~-------------~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~ 67 (312)
T 3qsg_A 2 HHHHHHSSGVDLGTENLY-FQ-------------SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAE 67 (312)
T ss_dssp -------------------------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHH
T ss_pred CcccccccccccCccccc-cc-------------CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHH
Confidence 456678888766544321 00 115899999999999999999999999 99999997 46667777
Q ss_pred hCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc--CCcEEeC
Q 022909 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLEA 189 (290)
Q Consensus 112 ~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~--~~~~~~~ 189 (290)
+.|+..+++++++++++|+|++++|.+...+ ++ +++.+.+++++++||+|+..+...+++.+.+.++ +++|+++
T Consensus 68 ~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~---~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~ 143 (312)
T 3qsg_A 68 ELGVSCKASVAEVAGECDVIFSLVTAQAALE-VA---QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAV 143 (312)
T ss_dssp HTTCEECSCHHHHHHHCSEEEECSCTTTHHH-HH---HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HCCCEEeCCHHHHHhcCCEEEEecCchhHHH-HH---HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 7888888899999999999999999866554 44 4567789999999999999999999999999888 8999999
Q ss_pred ccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCC-cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Q 022909 190 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFL 267 (290)
Q Consensus 190 p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~-~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~ 267 (290)
|++++++.. .+.+.++++++++ +.++++|+.+|++++++++ .+.+.++|++.|.+.+.+ .+++|++.++++.|+|
T Consensus 144 pv~g~~~~~-~g~l~i~vgg~~~--~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld 220 (312)
T 3qsg_A 144 AVMSAVKPH-GHRVPLVVDGDGA--RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLA 220 (312)
T ss_dssp EECSCSTTT-GGGSEEEEESTTH--HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred cccCCchhh-cCCEEEEecCChH--HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999976544 5677888888776 8999999999999999998 899999999999998887 9999999999999999
Q ss_pred HHHHHHHHhhcCCCCcc
Q 022909 268 INTVTMFLQSFSFGNLQ 284 (290)
Q Consensus 268 ~~~~~~~i~~~~~gs~~ 284 (290)
++ +.+.+..+. +++.
T Consensus 221 ~~-~~~~l~~~~-~~~~ 235 (312)
T 3qsg_A 221 DR-VLASLDASF-PEHH 235 (312)
T ss_dssp HH-HHHHHHHHS-GGGT
T ss_pred HH-HHHHHHhcC-Cchh
Confidence 95 667777766 4543
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=228.27 Aligned_cols=209 Identities=20% Similarity=0.285 Sum_probs=183.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
.++|+|||+|.||..+|+.|...|++|++|||++++.+.+.+.|+...++++++++++|+|++++|.+..++.++. ++
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~--~~ 86 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG--MP 86 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT--ST
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc--cc
Confidence 6899999999999999999999999999999999988888888888888999999999999999999888898883 22
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 230 (290)
.+..+++++++||+|+..+...+++.+.+++.+++|+++|++++++....+.+.+++++++++++.++++|+.+|.++++
T Consensus 87 ~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll~~lg~~~~~ 166 (306)
T 3l6d_A 87 GVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVF 166 (306)
T ss_dssp THHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHHHTTCSEEEE
T ss_pred chhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHHHHhcCCEEE
Confidence 24556899999999999999999999999999999999999998766666666788999999999999999999888999
Q ss_pred e--CC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcC--CCCcc
Q 022909 231 L--GD-VGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFS--FGNLQ 284 (290)
Q Consensus 231 ~--~~-~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~--~gs~~ 284 (290)
+ ++ .|.+..+| .++...+.+++|++.++++.|+|++++.+++.++. ..||.
T Consensus 167 ~~~g~~~g~g~~~k---~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~ 222 (306)
T 3l6d_A 167 LPWDEALAFATVLH---AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADA 222 (306)
T ss_dssp CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCccHHHHHH---HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHH
Confidence 9 86 79999998 33333348999999999999999999999999875 45554
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=233.80 Aligned_cols=211 Identities=18% Similarity=0.259 Sum_probs=187.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC-----CccCCCHHHHhh---cCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG-----AKYQPSPDEVAA---SCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g-----~~~~~~~~~~~~---~aDivv~~~p~~~~~~ 142 (290)
.++|||||+|.||..+|+.|...|++|.+|||++++.+.+.+.+ +..+.+++++++ ++|+|++++|.++.++
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 83 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD 83 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence 57899999999999999999999999999999999888877642 234678999887 4999999999988888
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHH
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~ 222 (290)
.++ +++.+.++++.+|||+|++.+.+..++.+.+.+.+++|+++|+++++.....++ .+++++++++++.++++|+
T Consensus 84 ~vl---~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~-~im~GG~~ea~~~v~pll~ 159 (484)
T 4gwg_A 84 DFI---EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-SLMPGGNKEAWPHIKTIFQ 159 (484)
T ss_dssp HHH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHH
T ss_pred HHH---HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC-eeecCCCHHHHHHHHHHHH
Confidence 888 567888999999999999999999999999999999999999999888777777 7788999999999999999
Q ss_pred HhCCcE-------EEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHH-CCCCHHHHHHHHhhcC---CCCccc
Q 022909 223 IMGKSR-------FYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEF-VDFLINTVTMFLQSFS---FGNLQY 285 (290)
Q Consensus 223 ~~G~~~-------~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~-~G~~~~~~~~~i~~~~---~gs~~~ 285 (290)
.+|..+ +++++.|.++++|++.|.+.+.+ .+++|++.++++ .|+|++++.+++..+. ..||.+
T Consensus 160 ~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~ 234 (484)
T 4gwg_A 160 GIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLI 234 (484)
T ss_dssp HHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHH
T ss_pred HhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHH
Confidence 999877 78899999999999999998888 999999999999 9999999999985444 445443
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=219.92 Aligned_cols=215 Identities=31% Similarity=0.502 Sum_probs=190.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
.|+|+|||+|.||..+++.|...|++|.+|||++++.+.+.+.|+....+++++++++|+|++++|.+..++.++...++
T Consensus 5 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~ 84 (299)
T 1vpd_A 5 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENG 84 (299)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred cceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcch
Confidence 47999999999999999999999999999999998888888778888889999999999999999988888888733245
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 230 (290)
+.+.+++++++|+++++.+.+.+.+.+.+.+.+++|++.|++++++....+.+.++++++++.++.++++|+.+|..+++
T Consensus 85 l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~ 164 (299)
T 1vpd_A 85 IIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVH 164 (299)
T ss_dssp HHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEE
T ss_pred HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCeEE
Confidence 56778999999999999988888999998888899999999887665555666777888899999999999999999999
Q ss_pred eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 231 LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 231 ~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+++.+.+.+.|++.|.+...+ .++.|++.++++.|++++++.+++.++..+++.+
T Consensus 165 ~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~ 220 (299)
T 1vpd_A 165 TGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVL 220 (299)
T ss_dssp EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHH
T ss_pred eCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHH
Confidence 999999999999999998887 9999999999999999999999999998887754
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=217.13 Aligned_cols=215 Identities=27% Similarity=0.472 Sum_probs=189.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
.++|+|||+|.||..+++.|...|++|.+|||++++.+.+.+.|+...++++++++++|+|++++|.+.+++.++...++
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~ 83 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGG 83 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcch
Confidence 58999999999999999999999999999999998888777778888889999999999999999998888888832135
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 230 (290)
+.+.+++++++|+++++.+.+.+.+.+.+++.+++++++|+.+++.....+.+.++++++++.++.++++|+.+|..+++
T Consensus 84 l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~ 163 (301)
T 3cky_A 84 VLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYH 163 (301)
T ss_dssp HHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEE
T ss_pred HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEE
Confidence 66778999999999999988888999998888899999998776644445666667788889999999999999999988
Q ss_pred eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 231 LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 231 ~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+++.+.+.+.|++.|.+...+ ..+.|++.++++.|++++++.+++.++..+++.+
T Consensus 164 ~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~ 219 (301)
T 3cky_A 164 VGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAM 219 (301)
T ss_dssp EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHH
Confidence 999999999999999988877 9999999999999999999999999998887644
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-30 Score=233.13 Aligned_cols=176 Identities=16% Similarity=0.134 Sum_probs=151.1
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|..+.......+.+. +++|||||+|+
T Consensus 119 ~V~n~pg~~~~--~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~-------------gktvGIIGlG~ 183 (345)
T 4g2n_A 119 KVLHTPDVLSD--ACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLT-------------GRRLGIFGMGR 183 (345)
T ss_dssp EEECCCSCCHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCT-------------TCEEEEESCSH
T ss_pred EEEECCcccch--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccC-------------CCEEEEEEeCh
Confidence 44555777777 8899999999999999999999999999985432222224555 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++.+|++|++|||++.+.+.. .+...++++++++++||+|++|+|.+++|++++ +++.++.||+++++
T Consensus 184 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li--~~~~l~~mk~gail 259 (345)
T 4g2n_A 184 IGRAIATRARGFGLAIHYHNRTRLSHALE--EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFL--DHDRIAKIPEGAVV 259 (345)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCCHHHH--TTCEECSSHHHHHHTCSEEEECSCCCGGGTTCB--CHHHHHHSCTTEEE
T ss_pred hHHHHHHHHHHCCCEEEEECCCCcchhhh--cCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHh--CHHHHhhCCCCcEE
Confidence 99999999999999999999987554322 267777799999999999999999999999999 77889999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
||++|+.++++++|.++|+++.+.....+++..||
T Consensus 260 IN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP 294 (345)
T 4g2n_A 260 INISRGDLINDDALIEALRSKHLFAAGLDVFANEP 294 (345)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred EECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC
Confidence 99999999999999999999988877778888776
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=218.47 Aligned_cols=204 Identities=19% Similarity=0.262 Sum_probs=173.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCc-------cchhhHHhCCCccCC-CHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTK-------SKCDPLISLGAKYQP-SPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~-------~~~~~~~~~g~~~~~-~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.|+|||||+|.||..+|+.|...| ++|++|||++ +..+.+.+.|+ ++ +++++++++|+|++++|.+...
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~ 101 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATK 101 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHH
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHH
Confidence 589999999999999999999999 9999999997 33444455666 56 7889999999999999987665
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHH
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll 221 (290)
+. + +++.+.+++++++||+|+..+.+.+.+.+.+++.+++|+++|+++++. ...+.+.++++++++ +.++++|
T Consensus 102 ~~-~---~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~-a~~g~l~i~vgg~~~--~~~~~ll 174 (317)
T 4ezb_A 102 AV-A---ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVP-PYAEKVPILVAGRRA--VEVAERL 174 (317)
T ss_dssp HH-H---HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCST-TTGGGSEEEEESTTH--HHHHHHH
T ss_pred HH-H---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCch-hhcCCEEEEEeCChH--HHHHHHH
Confidence 54 3 456778999999999999999999999999998899999999998644 445567788888776 8999999
Q ss_pred HHhCCcEEEeCC-cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCc
Q 022909 222 DIMGKSRFYLGD-VGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNL 283 (290)
Q Consensus 222 ~~~G~~~~~~~~-~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~ 283 (290)
+.+|++++++++ .|.+.++|++.|.+.+.+ .+++|++.++++.|+|++.+..+.......+|
T Consensus 175 ~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~~~~~~ 238 (317)
T 4ezb_A 175 NALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETFPGLDW 238 (317)
T ss_dssp HTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH
T ss_pred HHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCccccH
Confidence 999999999998 899999999999998888 99999999999999999766655555444444
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-30 Score=229.72 Aligned_cols=172 Identities=15% Similarity=0.106 Sum_probs=147.2
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+.+.|+|... +++|++++++|++.|+++.+++.+++|.|..... +.+. +++|||||+|.
T Consensus 91 ~v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~-----~~l~-------------g~tvGIIGlG~ 150 (324)
T 3hg7_A 91 QLTNVRGIFGP--LMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPY-----QGLK-------------GRTLLILGTGS 150 (324)
T ss_dssp EEECCCSCCHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCC-----CCST-------------TCEEEEECCSH
T ss_pred EEEECCCcChH--HHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCC-----cccc-------------cceEEEEEECH
Confidence 45556777777 8889999999999999999999999999985422 3444 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++.+|++|++|||+++..+.+.. .....++++++++||+|++|+|.+++|++++ +++.++.||+|+++
T Consensus 151 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~gail 226 (324)
T 3hg7_A 151 IGQHIAHTGKHFGMKVLGVSRSGRERAGFDQ--VYQLPALNKMLAQADVIVSVLPATRETHHLF--TASRFEHCKPGAIL 226 (324)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCCTTCSE--EECGGGHHHHHHTCSEEEECCCCCSSSTTSB--CTTTTTCSCTTCEE
T ss_pred HHHHHHHHHHhCCCEEEEEcCChHHhhhhhc--ccccCCHHHHHhhCCEEEEeCCCCHHHHHHh--HHHHHhcCCCCcEE
Confidence 9999999999999999999998754432211 2234689999999999999999999999999 77889999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
||+||+.++++++|.++|+++.+.....+++..||.
T Consensus 227 IN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl 262 (324)
T 3hg7_A 227 FNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPL 262 (324)
T ss_dssp EECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSC
T ss_pred EECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCC
Confidence 999999999999999999999888777778877664
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=212.93 Aligned_cols=214 Identities=30% Similarity=0.465 Sum_probs=188.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+|+|+|||+|.||+.+++.|...|++|.+|| ++++.+.+.+.|+....+++++++++|+|++++|.+.+++.++...++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~ 81 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHG 81 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTS
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchh
Confidence 4799999999999999999999999999999 988888887778887889999999999999999998888888832125
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 230 (290)
+.+.+++++++|+++++.+.+.+.+.+.+.+.++++++.|+++++.....+.+.++++++++.++.++++|+.+|.++++
T Consensus 82 l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ll~~~g~~~~~ 161 (295)
T 1yb4_A 82 CAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITL 161 (295)
T ss_dssp STTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEE
T ss_pred HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEE
Confidence 66788999999999999988888999988887888998998876544445666677888899999999999999999999
Q ss_pred eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 231 LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 231 ~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+++.+.+.+.|++.|.+...+ ..+.|+..++++.|++++++.+++..+..+++.+
T Consensus 162 ~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~ 217 (295)
T 1yb4_A 162 VGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRIL 217 (295)
T ss_dssp EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHH
Confidence 999999999999999988777 9999999999999999999999999998887654
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-30 Score=233.26 Aligned_cols=179 Identities=13% Similarity=0.108 Sum_probs=153.7
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|...... ...+.+. +++|||||+|+
T Consensus 111 ~V~n~~g~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~-~~~~~l~-------------gktvGIIG~G~ 174 (351)
T 3jtm_A 111 TVAEVTGSNVV--SVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIA-YRAYDLE-------------GKTIGTVGAGR 174 (351)
T ss_dssp EEEECTTTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHH-TTCCCST-------------TCEEEEECCSH
T ss_pred eEEECCCcCch--HHHHHHHHHHHHHhhCcHHHHHHHHcCCCcccccc-CCccccc-------------CCEEeEEEeCH
Confidence 45556777766 88999999999999999999999999999742110 0113344 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++.+|++|++|||++...+...+.|+...+++++++++||+|++|+|.+++|++++ +++.++.||+++++
T Consensus 175 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li--~~~~l~~mk~gail 252 (351)
T 3jtm_A 175 IGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMF--NKELIGKLKKGVLI 252 (351)
T ss_dssp HHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCB--SHHHHHHSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhh--cHHHHhcCCCCCEE
Confidence 9999999999999999999999866666666778878899999999999999999999999999 78889999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~ 198 (290)
||++|+.++++++|.++|+++++.....+++..||..
T Consensus 253 IN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 289 (351)
T 3jtm_A 253 VNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAP 289 (351)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCC
T ss_pred EECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCC
Confidence 9999999999999999999998887777888776643
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=211.52 Aligned_cols=216 Identities=43% Similarity=0.737 Sum_probs=190.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
.++|+|||+|.||..+++.|...|++|.+|||++++.+.+.+.|+....+.+++++++|+|++++|.+..++.++.....
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~ 109 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSG 109 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchh
Confidence 47899999999999999999999999999999999888888888887888999999999999999988888888733223
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 230 (290)
+++.+++++++|+++++.+...+.+.+.+...+..+++.|+++.+.....+.+.++++++++.++.++++|+.+|..+++
T Consensus 110 ~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~ 189 (316)
T 2uyy_A 110 VLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFF 189 (316)
T ss_dssp GGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEE
T ss_pred HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHHHHhcCCEEE
Confidence 45778999999999999988888899988877889999999887666666777777778888999999999999999989
Q ss_pred eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 231 LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 231 ~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
+++.+.+.+.|++.|.+.+.+ ..+.|++.++++.|++++++.+++.++..+++.+.
T Consensus 190 ~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~~~~ 246 (316)
T 2uyy_A 190 LGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLD 246 (316)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHH
Confidence 989999999999999988777 99999999999999999999999999998887653
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=210.31 Aligned_cols=213 Identities=29% Similarity=0.445 Sum_probs=184.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~ 151 (290)
|+|+|||+|.||..+++.|...|++|.+|||++++.+.+.+.|+...++++++++++|+|++++|.+..++.++...+.+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~ 80 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI 80 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence 47999999999999999999999999999999988888887788888899999999999999999988888888332235
Q ss_pred cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEe
Q 022909 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 152 ~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 231 (290)
++.+++++++|++++..+.+.+.+.+.+.+.+..++++|+++++.....+.+.++.+++++.++.++++|+.+|.+++++
T Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~ 160 (296)
T 2gf2_A 81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYC 160 (296)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHHTTTEEEEEEE
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHHHHHcCCeEEe
Confidence 56788999999998888888888888887778889999988765444556667788888999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCcc
Q 022909 232 GDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQ 284 (290)
Q Consensus 232 ~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~ 284 (290)
++.+.+.+.|++.|.+...+ ..+.|++.++++.|++++++.+++....+.+|.
T Consensus 161 ~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~ 214 (296)
T 2gf2_A 161 GAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWS 214 (296)
T ss_dssp ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHH
Confidence 99999999999999887777 899999999999999999999999986554443
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=227.31 Aligned_cols=177 Identities=16% Similarity=0.164 Sum_probs=150.0
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCC----cc---cccccccccccCCCccccCCCCeE
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPL----FP---LSFKVFSSQATGVSAEADELPGRI 74 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~----~~---l~~~~~~~~~~~~~~~~~~~~~~I 74 (290)
.+...|+| .. +++|++++++|++.|+++.+++.+++|.|..... ++ ...+.+. +++|
T Consensus 100 ~V~n~pg~-~~--~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~-------------g~tv 163 (352)
T 3gg9_A 100 VVLEGKGS-PV--APAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLK-------------GQTL 163 (352)
T ss_dssp EEECCCCC-SH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCT-------------TCEE
T ss_pred EEEECCCC-cH--HHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCC-------------CCEE
Confidence 34445777 55 8999999999999999999999999999985321 11 1113444 8999
Q ss_pred EEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccccccc
Q 022909 75 GFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASG 154 (290)
Q Consensus 75 giiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~ 154 (290)
||||+|.||+.+|++++++|++|++|||+++ .+...+.|+..++++++++++||+|++|+|.+++|++++ +++.++.
T Consensus 164 GIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li--~~~~l~~ 240 (352)
T 3gg9_A 164 GIFGYGKIGQLVAGYGRAFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSII--TVADLTR 240 (352)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEECSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHTT
T ss_pred EEEeECHHHHHHHHHHHhCCCEEEEECCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhh--CHHHHhh
Confidence 9999999999999999999999999999863 344555778877899999999999999999999999999 7788999
Q ss_pred CCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 155 MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 155 ~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
||+++++||++|+.++++++|.++|+++++.....+++..|+.
T Consensus 241 mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl 283 (352)
T 3gg9_A 241 MKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPI 283 (352)
T ss_dssp SCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCC
T ss_pred CCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCC
Confidence 9999999999999999999999999999998777777776654
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=224.89 Aligned_cols=173 Identities=16% Similarity=0.175 Sum_probs=123.5
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|+++|+++.+++.+++|.|.....+.+. +.+. +++|||||+|+
T Consensus 118 ~V~n~pg~~~~--~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~-~~l~-------------gktiGIIGlG~ 181 (340)
T 4dgs_A 118 DVTTTPGVLAD--DVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLG-HSPK-------------GKRIGVLGLGQ 181 (340)
T ss_dssp EEECCCSSSHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCC-CCCT-------------TCEEEEECCSH
T ss_pred EEEECCCCCcc--hHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCcc-cccc-------------CCEEEEECCCH
Confidence 44555777776 88999999999999999999999999999753222222 4555 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++.+|++|.+|||++++. .+.....++++++++||+|++++|.++++++++ +++.++.||+++++
T Consensus 182 IG~~vA~~l~~~G~~V~~~dr~~~~~-----~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li--~~~~l~~mk~gail 254 (340)
T 4dgs_A 182 IGRALASRAEAFGMSVRYWNRSTLSG-----VDWIAHQSPVDLARDSDVLAVCVAASAATQNIV--DASLLQALGPEGIV 254 (340)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCTT-----SCCEECSSHHHHHHTCSEEEECC------------CHHHHHHTTTTCEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCcccc-----cCceecCCHHHHHhcCCEEEEeCCCCHHHHHHh--hHHHHhcCCCCCEE
Confidence 99999999999999999999987642 235556799999999999999999999999999 77889999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
||++|+.++++++|.++|+++.+.....+++..||.
T Consensus 255 IN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~ 290 (340)
T 4dgs_A 255 VNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPA 290 (340)
T ss_dssp EECSCC--------------CCSSEEEESCCSSSSS
T ss_pred EECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCC
Confidence 999999999999999999999998888888887764
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-29 Score=226.18 Aligned_cols=175 Identities=15% Similarity=0.125 Sum_probs=150.0
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+++.+.+.++++.|..+... ..+.+. ++++||||+|+
T Consensus 89 ~v~n~p~~~~~--~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~--~~~~l~-------------g~tvGIiG~G~ 151 (334)
T 3kb6_A 89 LVTHIPAYSPE--SVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEI--LARELN-------------RLTLGVIGTGR 151 (334)
T ss_dssp EEECCTTSCHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGG--CBCCGG-------------GSEEEEECCSH
T ss_pred EEEECCCcCcH--HHHHHHHHHHHHHhhcccccccccccccccccccc--ccceec-------------CcEEEEECcch
Confidence 44556777777 88889999999999999999999999999754322 124555 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|+++..+|++|++||+.+.. ...+.++.. .++++++++||+|++|+|.+++|++++ +++.++.||+++++
T Consensus 152 IG~~va~~~~~fg~~v~~~d~~~~~--~~~~~~~~~-~~l~ell~~sDivslh~Plt~~T~~li--~~~~l~~mk~~a~l 226 (334)
T 3kb6_A 152 IGSRVAMYGLAFGMKVLCYDVVKRE--DLKEKGCVY-TSLDELLKESDVISLHVPYTKETHHMI--NEERISLMKDGVYL 226 (334)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCB--CHHHHHHSCTTEEE
T ss_pred HHHHHHHhhcccCceeeecCCccch--hhhhcCcee-cCHHHHHhhCCEEEEcCCCChhhccCc--CHHHHhhcCCCeEE
Confidence 9999999999999999999987643 334455554 489999999999999999999999999 88999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~ 198 (290)
||+|||..+++++|.++|+++.+.....+++..|+..
T Consensus 227 IN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~ 263 (334)
T 3kb6_A 227 INTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEIL 263 (334)
T ss_dssp EECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHH
T ss_pred EecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCc
Confidence 9999999999999999999998888888888877643
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-30 Score=227.40 Aligned_cols=175 Identities=15% Similarity=0.095 Sum_probs=149.9
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|..+...... +.+. +++|||||+|+
T Consensus 92 ~v~n~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~-~~l~-------------g~tvGIIG~G~ 155 (330)
T 4e5n_A 92 WLTFVPDLLTV--PTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYG-TGLD-------------NATVGFLGMGA 155 (330)
T ss_dssp EEECCSSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCC-CCST-------------TCEEEEECCSH
T ss_pred EEEeCCCCCch--HHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccC-CccC-------------CCEEEEEeeCH
Confidence 44556778877 88899999999999999999999999999744322112 4455 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++.+|++|++|||++.+.+...+.|+... ++++++++||+|++|+|.+++|++++ +++.++.||+++++
T Consensus 156 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~gail 232 (330)
T 4e5n_A 156 IGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLV--NAELLALVRPGALL 232 (330)
T ss_dssp HHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHTTSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeC-CHHHHHhhCCEEEEcCCCCHHHHHHh--CHHHHhhCCCCcEE
Confidence 9999999999999999999999855555555566554 89999999999999999999999999 77889999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCC
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK 195 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~ 195 (290)
||++|+.++++++|.++|+++++.....+++..|
T Consensus 233 IN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E 266 (330)
T 4e5n_A 233 VNPCRGSVVDEAAVLAALERGQLGGYAADVFEME 266 (330)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGG
T ss_pred EECCCCchhCHHHHHHHHHhCCccEEEecccccc
Confidence 9999999999999999999998887777777766
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-28 Score=225.35 Aligned_cols=208 Identities=17% Similarity=0.253 Sum_probs=185.9
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----CCCccCCCHHHHhhc---CCeEEEEeCChhHH
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKYQPSPDEVAAS---CDVTFAMLADPESA 141 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----~g~~~~~~~~~~~~~---aDivv~~~p~~~~~ 141 (290)
|..+|||||+|.||..+|+.|...|++|.+|||++++.+.+.+ .|+..+.++++++++ +|+|++++|.+..+
T Consensus 9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v 88 (497)
T 2p4q_A 9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPV 88 (497)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHH
T ss_pred CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHH
Confidence 3588999999999999999999999999999999999888877 477778899999887 99999999998888
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHH
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll 221 (290)
+.++ +++.+.++++.+|||++++.+.+...+.+.+.+.+++|+++|+++++.....++ .++.++++++++.++++|
T Consensus 89 ~~vl---~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~-~im~gg~~e~~~~v~~ll 164 (497)
T 2p4q_A 89 DALI---NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP-SLMPGGSEEAWPHIKNIF 164 (497)
T ss_dssp HHHH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHH
T ss_pred HHHH---HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC-eEEecCCHHHHHHHHHHH
Confidence 8888 457788999999999999999999899999988899999999999887766677 577788999999999999
Q ss_pred HHhCCc------EEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHH-CCCCHHHHHHHHhhcCCC
Q 022909 222 DIMGKS------RFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEF-VDFLINTVTMFLQSFSFG 281 (290)
Q Consensus 222 ~~~G~~------~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~-~G~~~~~~~~~i~~~~~g 281 (290)
+.+|.. +.++++.|.+.++|++.|.+.+.+ .+++|++.++++ .|++++++.+++..+..|
T Consensus 165 ~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g 232 (497)
T 2p4q_A 165 QSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNG 232 (497)
T ss_dssp HHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTT
T ss_pred HHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCC
Confidence 999987 678888999999999999998777 999999999999 699999999999754443
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-29 Score=225.27 Aligned_cols=176 Identities=13% Similarity=0.077 Sum_probs=144.8
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|.+........+.+. +++|||||+|.
T Consensus 122 ~V~n~~~~~~~--~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~-------------gktvGIIGlG~ 186 (365)
T 4hy3_A 122 HVVTTGQVFAE--PVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIA-------------GSEIGIVGFGD 186 (365)
T ss_dssp EEEECGGGGHH--HHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSS-------------SSEEEEECCSH
T ss_pred EEEeCCCccch--HHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccC-------------CCEEEEecCCc
Confidence 45556777776 8899999999999999999999999999642221111124455 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++++|++|++||+++. .+...+.|+.. .++++++++||+|++|+|.+++|++++ +++.++.||+++++
T Consensus 187 IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li--~~~~l~~mk~gail 262 (365)
T 4hy3_A 187 LGKALRRVLSGFRARIRVFDPWLP-RSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFL--GAEAFSSMRRGAAF 262 (365)
T ss_dssp HHHHHHHHHTTSCCEEEEECSSSC-HHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC---CC--CHHHHHTSCTTCEE
T ss_pred ccHHHHHhhhhCCCEEEEECCCCC-HHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhc--CHHHHhcCCCCcEE
Confidence 999999999999999999999863 34445567765 489999999999999999999999999 77889999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
||++|+.++++++|.++|+++.+. ...+++..|+.
T Consensus 263 IN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl 297 (365)
T 4hy3_A 263 ILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPL 297 (365)
T ss_dssp EECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSC
T ss_pred EECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCC
Confidence 999999999999999999999887 56788877664
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-29 Score=224.98 Aligned_cols=173 Identities=10% Similarity=0.060 Sum_probs=147.1
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccc-cccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEccc
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSY-FRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMG 80 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~-~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G 80 (290)
.+.+.|+|... +++|++++++|++.|+++.+ .+.+++|.|.... ..+.+. +++|||||+|
T Consensus 86 ~v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~----~~~~l~-------------gktvGIiGlG 146 (324)
T 3evt_A 86 VVANTSGIHAD--AISESVLAAMLSVVRGYHAAWLNQRGARQWALPM----TTSTLT-------------GQQLLIYGTG 146 (324)
T ss_dssp EEECCTTHHHH--HHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS----CCCCST-------------TCEEEEECCS
T ss_pred EEEECCCcCch--HHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC----CCcccc-------------CCeEEEECcC
Confidence 34455666555 88999999999999999999 9999999998543 114455 8999999999
Q ss_pred HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCE
Q 022909 81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG 160 (290)
Q Consensus 81 ~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 160 (290)
.||+.+|++++++|++|++|||+++..+.+.. .....++++++++||+|++|+|.+++|++++ +++.++.||++++
T Consensus 147 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~t~~li--~~~~l~~mk~gai 222 (324)
T 3evt_A 147 QIGQSLAAKASALGMHVIGVNTTGHPADHFHE--TVAFTATADALATANFIVNALPLTPTTHHLF--STELFQQTKQQPM 222 (324)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCCCGGGTTCB--SHHHHHTCCSCCE
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCCchHHHHhc--CHHHHhcCCCCCE
Confidence 99999999999999999999999765443322 1234588999999999999999999999999 7788999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 161 lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
+||+||+.++++++|.++|+++.+.....+++..|+.
T Consensus 223 lIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl 259 (324)
T 3evt_A 223 LINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPL 259 (324)
T ss_dssp EEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSC
T ss_pred EEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCC
Confidence 9999999999999999999999998878888887764
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=223.73 Aligned_cols=204 Identities=22% Similarity=0.293 Sum_probs=183.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC----CCccCCCHHHHhhc---CCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEVAAS---CDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~~~~~---aDivv~~~p~~~~~~~ 143 (290)
+++|||||+|.||+.+|+.|...|++|.+|||++++.+.+.+. |+..+.++++++++ +|+|++++|.++.++.
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~ 94 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDA 94 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHH
T ss_pred CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHH
Confidence 5889999999999999999999999999999999888877664 67778899999887 9999999998888888
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHH
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI 223 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~ 223 (290)
++ +++.+.++++.+|||++++.+.+...+.+.+++.+++++++|+++++.....++ .++++++++.++.++++|+.
T Consensus 95 vl---~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~ 170 (480)
T 2zyd_A 95 AI---DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILTK 170 (480)
T ss_dssp HH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEESCHHHHHHHHHHHHH
T ss_pred HH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC-eEEecCCHHHHHHHHHHHHH
Confidence 88 456788999999999999999998889999988899999999998877666677 67888899999999999999
Q ss_pred hCCc-------EEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHH-CCCCHHHHHHHHhhc
Q 022909 224 MGKS-------RFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEF-VDFLINTVTMFLQSF 278 (290)
Q Consensus 224 ~G~~-------~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~-~G~~~~~~~~~i~~~ 278 (290)
+|.. +.++++.|.+.++|++.|.+.+.+ .+++|++.++++ .|++++++.+++..+
T Consensus 171 ~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w 234 (480)
T 2zyd_A 171 IAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEW 234 (480)
T ss_dssp HSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 9987 678889999999999999998777 999999999999 699999999999653
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-29 Score=224.38 Aligned_cols=170 Identities=12% Similarity=0.097 Sum_probs=142.7
Q ss_pred eecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHH
Q 022909 5 VKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGT 84 (290)
Q Consensus 5 ~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~ 84 (290)
..|+|.. ..+++|++++++|++.|+++.+++.+++|.|..... +.+. +++|||||+|+||+
T Consensus 92 ~~~~~~~-~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~-----~~l~-------------g~tvGIiG~G~IG~ 152 (315)
T 3pp8_A 92 RLEDTGM-GLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPE-----YTRE-------------EFSVGIMGAGVLGA 152 (315)
T ss_dssp EC--CCC-HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCC-----CCST-------------TCCEEEECCSHHHH
T ss_pred EcCCCCc-cHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCC-----CCcC-------------CCEEEEEeeCHHHH
Confidence 3455543 348999999999999999999999999999985422 3444 89999999999999
Q ss_pred HHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEe
Q 022909 85 PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDV 164 (290)
Q Consensus 85 ~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~ 164 (290)
.+|++++.+|++|++|||+++..+.+... ....++++++++||+|++|+|.+++|++++ +++.++.||+++++||+
T Consensus 153 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~t~~li--~~~~l~~mk~gailIN~ 228 (315)
T 3pp8_A 153 KVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQTVGII--NSELLDQLPDGAYVLNL 228 (315)
T ss_dssp HHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGGGTTCB--SHHHHTTSCTTEEEEEC
T ss_pred HHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchhhhhhc--cHHHHhhCCCCCEEEEC
Confidence 99999999999999999988654332211 112578999999999999999999999999 77889999999999999
Q ss_pred cCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 165 STVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 165 s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
+|+.++++++|.++|+++.+.....+++..|+.
T Consensus 229 aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl 261 (315)
T 3pp8_A 229 ARGVHVQEADLLAALDSGKLKGAMLDVFSQEPL 261 (315)
T ss_dssp SCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSC
T ss_pred CCChhhhHHHHHHHHHhCCccEEEcCCCCCCCC
Confidence 999999999999999999888777788877764
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-29 Score=218.04 Aligned_cols=168 Identities=13% Similarity=0.147 Sum_probs=146.2
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+++|++... .+++|++++++|++.|+++.+++.+++|.|..... +.+. +++|||||+|.|
T Consensus 74 ~~~~~~~~~--~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~-----~~l~-------------g~tvGIIGlG~I 133 (290)
T 3gvx_A 74 LCSNAGAYS--ISVAEHAFALLLAHAKNILENNELMKAGIFRQSPT-----TLLY-------------GKALGILGYGGI 133 (290)
T ss_dssp EECCHHHHH--HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCC-----CCCT-------------TCEEEEECCSHH
T ss_pred EeecCCcce--eeHHHHHHHHHHHHHHhhhhhhhHhhhcccccCCc-----eeee-------------cchheeeccCch
Confidence 566764322 48999999999999999999999999999985432 3444 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
|+.+|++++++|++|++|||++++.+. ....+++++++++||+|++|+|.++++++++ +++.++.||+++++|
T Consensus 134 G~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell~~aDiV~l~~P~t~~t~~li--~~~~l~~mk~gailI 206 (290)
T 3gvx_A 134 GRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLFRQSDFVLIAIPLTDKTRGMV--NSRLLANARKNLTIV 206 (290)
T ss_dssp HHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHHHHCSEEEECCCCCTTTTTCB--SHHHHTTCCTTCEEE
T ss_pred hHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHhhccCeEEEEeeccccchhhh--hHHHHhhhhcCceEE
Confidence 999999999999999999999765432 4456699999999999999999999999999 778899999999999
Q ss_pred EecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
|+||+.++++++|.++|+++++.....+++..++.
T Consensus 207 N~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 241 (290)
T 3gvx_A 207 NVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE 241 (290)
T ss_dssp ECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS
T ss_pred EeehhcccCCcchhhhhhhccceEEeeccccCCcc
Confidence 99999999999999999999998888888877664
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-28 Score=221.77 Aligned_cols=172 Identities=11% Similarity=0.064 Sum_probs=142.3
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|..+ +++|++++++|++.|+++.+++.+++|.|.+.... + +++. +++|||||+|+
T Consensus 105 ~V~n~p~~n~~--aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~--~-~el~-------------gktvGIIGlG~ 166 (416)
T 3k5p_A 105 PVFNAPFSNTR--SVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIG--S-REVR-------------GKTLGIVGYGN 166 (416)
T ss_dssp CEECCSSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTT--C-CCST-------------TCEEEEECCSH
T ss_pred EEEeCCCcccH--HHHHHHHHHHHHHhcccHHHHHhhhcccccccCCC--C-ccCC-------------CCEEEEEeeCH
Confidence 34555777777 88899999999999999999999999999854321 1 3455 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|+++.++|++|++||++++... .+.....++++++++||+|++|+|.+++|++++ +++.++.||+|+++
T Consensus 167 IG~~vA~~l~~~G~~V~~yd~~~~~~~----~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li--~~~~l~~mk~gail 240 (416)
T 3k5p_A 167 IGSQVGNLAESLGMTVRYYDTSDKLQY----GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLI--TEAKLRKMKKGAFL 240 (416)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTCCCCB----TTBEECSSHHHHHHHCSEEEECCCC-----CCB--CHHHHHHSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCcchhcc----cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhc--CHHHHhhCCCCcEE
Confidence 999999999999999999999864321 234456799999999999999999999999999 77889999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
||+||+.++++++|.++|+++.+.....+++..|+.
T Consensus 241 IN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~ 276 (416)
T 3k5p_A 241 INNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPA 276 (416)
T ss_dssp EECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCS
T ss_pred EECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCC
Confidence 999999999999999999998888777788877654
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=206.46 Aligned_cols=208 Identities=25% Similarity=0.364 Sum_probs=181.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~ 151 (290)
|+|+|||+|.||..+++.|.. |++|.+|||++++.+.+.+.|+...+ ++++++++|+|++++|.+..++.++ +++
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~---~~l 76 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA---EAL 76 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH---HHH
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH---HHH
Confidence 689999999999999999999 99999999999887777766666555 7788899999999999877788777 455
Q ss_pred cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEe
Q 022909 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 152 ~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 231 (290)
.+.+++++++|++|++.+.+.+.+.+.+++.+++++++|+++++.....+.+.++++++++.++.++++| .+|.+++++
T Consensus 77 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~g~~~~~~ 155 (289)
T 2cvz_A 77 YPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHV 155 (289)
T ss_dssp TTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEEEE
T ss_pred HhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hhcCCeEEc
Confidence 6778999999999999998888999988877888999998776655555666677788889999999999 999988899
Q ss_pred CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 232 GDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 232 ~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
++.+.+.+.|++.|.+...+ .++.|++.++++.|++++++.+++.++..+++++
T Consensus 156 ~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~ 210 (289)
T 2cvz_A 156 GPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNAT 210 (289)
T ss_dssp ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCCHHH
Confidence 99999999999999988887 9999999999999999999999999988777543
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-28 Score=220.12 Aligned_cols=172 Identities=10% Similarity=0.057 Sum_probs=146.1
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCcccccccc-CCCCCCCCCcccccccccccccCCCccccCCCCeEEEEccc
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKP-INSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMG 80 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~-~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G 80 (290)
.+...|+|+.. +++|++++++|++.|+++.+++.++ +|.|.+... ...+.+. +++|||||+|
T Consensus 95 ~v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~--~~~~~l~-------------gktvgIiGlG 157 (343)
T 2yq5_A 95 LVTNVPVYSPR--AIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSN--LISNEIY-------------NLTVGLIGVG 157 (343)
T ss_dssp EEECCSCSCHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGG--GCBCCGG-------------GSEEEEECCS
T ss_pred EEEECCCCCcH--HHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccC--CCccccC-------------CCeEEEEecC
Confidence 34455788887 8899999999999999999999999 888753221 1124555 8999999999
Q ss_pred HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCE
Q 022909 81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG 160 (290)
Q Consensus 81 ~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 160 (290)
.||+.+|++++++|++|++|||+++.. .+.+.... ++++++++||+|++|+|.+++|++++ +++.++.||++++
T Consensus 158 ~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~~~-~l~ell~~aDvV~l~~Plt~~t~~li--~~~~l~~mk~gai 231 (343)
T 2yq5_A 158 HIGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLTYT-DFDTVLKEADIVSLHTPLFPSTENMI--GEKQLKEMKKSAY 231 (343)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCB--CHHHHHHSCTTCE
T ss_pred HHHHHHHHHHhhCCCEEEEECCChhhh---hhcccccc-CHHHHHhcCCEEEEcCCCCHHHHHHh--hHHHHhhCCCCcE
Confidence 999999999999999999999997641 12234444 89999999999999999999999999 7788999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 161 lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
+||++|+.++++++|.++|+++.+.....+++..|+
T Consensus 232 lIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 267 (343)
T 2yq5_A 232 LINCARGELVDTGALIKALQDGEIAGAGLDTLAGES 267 (343)
T ss_dssp EEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGG
T ss_pred EEECCCChhhhHHHHHHHHHcCCCcEEEecccccCC
Confidence 999999999999999999999988877778887776
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-29 Score=222.89 Aligned_cols=178 Identities=10% Similarity=0.028 Sum_probs=150.9
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|.... .....+.+. +++|||||+|+
T Consensus 111 ~V~n~pg~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~~~l~-------------g~tvgIIG~G~ 174 (364)
T 2j6i_A 111 SVLEVTGSNVV--SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAA-IAKDAYDIE-------------GKTIATIGAGR 174 (364)
T ss_dssp EEEECTTSSHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH-HHTTCCCST-------------TCEEEEECCSH
T ss_pred EEEECCCcCcH--HHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCc-ccCCcccCC-------------CCEEEEECcCH
Confidence 34555777776 889999999999999999999999999996311 000113444 89999999999
Q ss_pred hHHHHHHHHHHCCCe-EEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCE
Q 022909 82 MGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG 160 (290)
Q Consensus 82 iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 160 (290)
||+.+|+++..+|++ |++|||++.+.+...+.|+....++++++++||+|++|+|.+++|++++ +++.++.|+++++
T Consensus 175 IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~ga~ 252 (364)
T 2j6i_A 175 IGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLI--NKELLSKFKKGAW 252 (364)
T ss_dssp HHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCB--CHHHHTTSCTTEE
T ss_pred HHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHh--CHHHHhhCCCCCE
Confidence 999999999999997 9999998876665566677766789999999999999999999999999 6778999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 161 lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
+||++|+.++++++|.++|+++++.....+++..|+.
T Consensus 253 lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~ 289 (364)
T 2j6i_A 253 LVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPA 289 (364)
T ss_dssp EEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSC
T ss_pred EEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCC
Confidence 9999999999999999999999888777778877653
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-28 Score=213.59 Aligned_cols=174 Identities=13% Similarity=0.078 Sum_probs=146.7
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|.+... ..+.+. +++|||||+|+
T Consensus 91 ~v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~---~~~~l~-------------g~~vgIiG~G~ 152 (307)
T 1wwk_A 91 EVVNAPAASSR--SVAELAVGLMFSVARKIAFADRKMREGVWAKKEA---MGIELE-------------GKTIGIIGFGR 152 (307)
T ss_dssp EEECCGGGGHH--HHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTC---CBCCCT-------------TCEEEEECCSH
T ss_pred EEEECCCCChH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCc---CCcccC-------------CceEEEEccCH
Confidence 34455777766 8899999999999999999999999999974211 113444 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++.+|++|++|||++++ +...+.|+... +++++++++|+|++|+|.++++++++ +++.++.||+++++
T Consensus 153 IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDvV~l~~p~~~~t~~li--~~~~l~~mk~ga~l 228 (307)
T 1wwk_A 153 IGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLI--NEERLKLMKKTAIL 228 (307)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHHHSCTTCEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCcccc-CHHHHHhhCCEEEEecCCChHHhhhc--CHHHHhcCCCCeEE
Confidence 9999999999999999999999876 44555677654 89999999999999999999999998 66788999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
||++|+.++++++|.++|+++.+......++..++.
T Consensus 229 in~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~ 264 (307)
T 1wwk_A 229 INTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPL 264 (307)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSC
T ss_pred EECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 999999999999999999998887666666665543
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-28 Score=223.00 Aligned_cols=176 Identities=8% Similarity=0.020 Sum_probs=146.6
Q ss_pred eee-cccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 4 LVK-SSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 4 ~~~-~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
++| |+|... +++|++++++|++.|+++.+++.+++|.|....... ..+.+. +++|||||+|+|
T Consensus 139 V~n~~g~~~~--~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~~~-~~~~l~-------------gktvGIIGlG~I 202 (393)
T 2nac_A 139 VAEVTYCNSI--SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVS-HAYDLE-------------AMHVGTVAAGRI 202 (393)
T ss_dssp EEECTTTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHT-TCCCCT-------------TCEEEEECCSHH
T ss_pred EEeCCCcccH--HHHHHHHHHHHHHHhccHHHHHHHHcCCCCcccccc-CCccCC-------------CCEEEEEeECHH
Confidence 455 555444 889999999999999999999999999996321000 012344 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
|+.+|++++.+|++|++||+++.+.+...+.|+....++++++++||+|++|+|.+++|++++ +++.++.||+++++|
T Consensus 203 G~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li--~~~~l~~mk~gailI 280 (393)
T 2nac_A 203 GLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI--NDETLKLFKRGAYIV 280 (393)
T ss_dssp HHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCB--SHHHHTTSCTTEEEE
T ss_pred HHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHh--hHHHHhhCCCCCEEE
Confidence 999999999999999999998766555555677766789999999999999999999999999 677899999999999
Q ss_pred EecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
|++|+.++++++|.++|+++.+.....+++..|+.
T Consensus 281 N~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~ 315 (393)
T 2nac_A 281 NTARGKLCDRDAVARALESGRLAGYAGDVWFPQPA 315 (393)
T ss_dssp ECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSC
T ss_pred ECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCC
Confidence 99999999999999999998777666667765553
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-28 Score=216.11 Aligned_cols=173 Identities=12% Similarity=0.097 Sum_probs=146.3
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|.... ...+.+. +++|||||+|.
T Consensus 114 ~v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~---~~~~~l~-------------g~tvgIIGlG~ 175 (335)
T 2g76_A 114 LVMNTPNGNSL--SAAELTCGMIMCLARQIPQATASMKDGKWERKK---FMGTELN-------------GKTLGILGLGR 175 (335)
T ss_dssp EEECCSSTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGG---GCBCCCT-------------TCEEEEECCSH
T ss_pred EEEECCCccch--HHHHHHHHHHHHHHhchHHHHHHHHcCCCCccC---CCCcCCC-------------cCEEEEEeECH
Confidence 34445777776 888999999999999999999999999997421 1113444 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++++|++|++|||++++ +...+.|+.. .++++++++||+|++|+|.++++++++ +++.++.||+++++
T Consensus 176 IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~gail 251 (335)
T 2g76_A 176 IGREVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLL--NDNTFAQCKKGVRV 251 (335)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTTTTSB--CHHHHTTSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHHHHHhh--CHHHHhhCCCCcEE
Confidence 9999999999999999999998765 3445567665 489999999999999999999999999 67789999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
||++|+.++++++|.++|+++.+.....+++..++
T Consensus 252 IN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP 286 (335)
T 2g76_A 252 VNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP 286 (335)
T ss_dssp EECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS
T ss_pred EECCCccccCHHHHHHHHHhCCccEEEEeecCCCC
Confidence 99999999999999999999887766666776665
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-28 Score=213.74 Aligned_cols=177 Identities=12% Similarity=0.078 Sum_probs=146.3
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|..+.......+.+. +++|||||+|+
T Consensus 92 ~v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~-------------g~~vgIIG~G~ 156 (320)
T 1gdh_A 92 KVGNAPHGVTV--ATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLD-------------NKTLGIYGFGS 156 (320)
T ss_dssp EEECCCCSCHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCT-------------TCEEEEECCSH
T ss_pred EEEEcCCCCHH--HHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCC-------------CCEEEEECcCH
Confidence 34455777776 8899999999999999999999999999963221111113444 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeC-CccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNR-TKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG 160 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~-~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 160 (290)
||+.+|+++..+|++|++||+ ++++ ....+.|+...++++++++++|+|++|+|.++++++++ +++.++.|+++++
T Consensus 157 IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i--~~~~l~~mk~gai 233 (320)
T 1gdh_A 157 IGQALAKRAQGFDMDIDYFDTHRASS-SDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF--NKATIKSLPQGAI 233 (320)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCB--SHHHHTTSCTTEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhc--CHHHHhhCCCCcE
Confidence 999999999999999999999 8765 33445677766689999999999999999999999998 6678899999999
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 161 lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
+||++|+.++++++|.++|+++++......++..++
T Consensus 234 lIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP 269 (320)
T 1gdh_A 234 VVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP 269 (320)
T ss_dssp EEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred EEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 999999999999999999999877765556665554
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=214.30 Aligned_cols=207 Identities=22% Similarity=0.322 Sum_probs=181.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC----CCccCCCHHHHhhc---CCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEVAAS---CDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~~~~~---aDivv~~~p~~~~~~~ 143 (290)
.++|||||+|.||+.+|+.|...|++|.+|||++++.+.+.+. ++..+.++++++++ +|+|++++|.+..++.
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~ 84 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDA 84 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHH
Confidence 4789999999999999999999999999999999888877663 67777899999886 9999999998888888
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHH
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI 223 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~ 223 (290)
++ +++.+.++++.+||+++++.+.+...+.+.+.+.+++++++|+++++.....++ .++.+++++..+.++++|+.
T Consensus 85 vl---~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~ 160 (474)
T 2iz1_A 85 TI---KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQ 160 (474)
T ss_dssp HH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC-CEEEEECHHHHHHHHHHHHH
T ss_pred HH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC-eEEecCCHHHHHHHHHHHHH
Confidence 87 456778899999999999998888888888887889999999988776655666 45677889999999999999
Q ss_pred hCCc--------EEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHH-CCCCHHHHHHHHhhcCCC
Q 022909 224 MGKS--------RFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEF-VDFLINTVTMFLQSFSFG 281 (290)
Q Consensus 224 ~G~~--------~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~-~G~~~~~~~~~i~~~~~g 281 (290)
+|.. +.++++.|.+.+.|++.|.+.+.+ .+++|++.++++ .|++++++.+++..+..|
T Consensus 161 ~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g 228 (474)
T 2iz1_A 161 IAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEG 228 (474)
T ss_dssp HSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTT
T ss_pred HhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCC
Confidence 9987 567888999999999999998877 999999999999 799999999999765554
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-28 Score=222.43 Aligned_cols=170 Identities=12% Similarity=0.017 Sum_probs=138.8
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+...|+|... +++|++++++|+++|+++++++.+++|.|.+.... .+++. +++|||||+|+|
T Consensus 95 V~n~p~~n~~--~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~---~~el~-------------gktlGiIGlG~I 156 (404)
T 1sc6_A 95 VFNAPFSNTR--SVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAG---SFEAR-------------GKKLGIIGYGHI 156 (404)
T ss_dssp EECCTTTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCST-------------TCEEEEECCSHH
T ss_pred EEecCcccHH--HHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCC---ccccC-------------CCEEEEEeECHH
Confidence 4445677776 88999999999999999999999999999743211 13455 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
|+.+|+++.++|++|++|||++... ..++....++++++++||+|++|+|.+++|++++ +++.++.||+|+++|
T Consensus 157 G~~vA~~l~~~G~~V~~~d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~ga~lI 230 (404)
T 1sc6_A 157 GTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMM--GAKEISLMKPGSLLI 230 (404)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCB--CHHHHHHSCTTEEEE
T ss_pred HHHHHHHHHHCCCEEEEEcCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChHHHHHh--hHHHHhhcCCCeEEE
Confidence 9999999999999999999986532 1235566789999999999999999999999999 677899999999999
Q ss_pred EecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
|+||+.++++++|.++|+++.+.....+++..+|
T Consensus 231 N~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP 264 (404)
T 1sc6_A 231 NASRGTVVDIPALADALASKHLAGAAIDVFPTEP 264 (404)
T ss_dssp ECSCSSSBCHHHHHHHHHTTSEEEEEEEC-----
T ss_pred ECCCChHHhHHHHHHHHHcCCccEEEEeecCCCC
Confidence 9999999999999999999877655455555544
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-27 Score=210.87 Aligned_cols=164 Identities=13% Similarity=0.132 Sum_probs=140.8
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+.++|++... +++|++++++|++.|+++.+++.+++|.|...... +.+. +++|||||+|+
T Consensus 74 ~v~~~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~----~~l~-------------g~~vgIIG~G~ 134 (303)
T 1qp8_A 74 TVAGNAGSNAD--AVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEI----PLIQ-------------GEKVAVLGLGE 134 (303)
T ss_dssp CEECCCSSSHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCC----CCCT-------------TCEEEEESCST
T ss_pred EEEECCCCCch--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCC----CCCC-------------CCEEEEEccCH
Confidence 34555766665 89999999999999999999999999999643111 2344 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++.+|++|++|||+++ +. +.....++++++++||+|++|+|.++++++++ +++.++.||+++++
T Consensus 135 IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i--~~~~l~~mk~gail 206 (303)
T 1qp8_A 135 IGTRVGKILAALGAQVRGFSRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKHTRGLV--KYQHLALMAEDAVF 206 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCB--CHHHHTTSCTTCEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHh--CHHHHhhCCCCCEE
Confidence 999999999999999999999876 21 34445689999999999999999999999999 66789999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccC
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVS 192 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~ 192 (290)
||+||+.++++++|.++|+++.+.....+++
T Consensus 207 in~srg~~vd~~aL~~aL~~g~i~gA~lDv~ 237 (303)
T 1qp8_A 207 VNVGRAEVLDRDGVLRILKERPQFIFASDVW 237 (303)
T ss_dssp EECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred EECCCCcccCHHHHHHHHHhCCceEEEeccC
Confidence 9999999999999999999988877777777
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-27 Score=213.20 Aligned_cols=171 Identities=15% Similarity=0.087 Sum_probs=145.8
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+...|+|+.. +++|++++++|++.|+++.+++.+++|.|.+... ..+.+. +++|||||+|+|
T Consensus 96 v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~---~~~~l~-------------g~~vgIiG~G~I 157 (333)
T 1j4a_A 96 ITNVPVYSPN--AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPT---IGREVR-------------DQVVGVVGTGHI 157 (333)
T ss_dssp EECCCCSCHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTC---CBCCGG-------------GSEEEEECCSHH
T ss_pred EEeCCCCCch--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCc---ccccCC-------------CCEEEEEccCHH
Confidence 4444777777 8889999999999999999999999999963211 113455 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
|+.+|++++.+|++|++||+++++. +.+ .+...+++++++++||+|++|+|.++++++++ +++.++.|++++++|
T Consensus 158 G~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li--~~~~l~~mk~ga~lI 232 (333)
T 1j4a_A 158 GQVFMQIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMI--NDESIAKMKQDVVIV 232 (333)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCB--SHHHHHHSCTTEEEE
T ss_pred HHHHHHHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHH--hHHHHhhCCCCcEEE
Confidence 9999999999999999999987653 233 24445589999999999999999999999998 667889999999999
Q ss_pred EecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
|++|+.++++++|.++|+++++.....+++..|+
T Consensus 233 n~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 266 (333)
T 1j4a_A 233 NVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEV 266 (333)
T ss_dssp ECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCT
T ss_pred ECCCCcccCHHHHHHHHHhCCceEEEEecCCCCC
Confidence 9999999999999999999988887788888776
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-27 Score=213.14 Aligned_cols=177 Identities=11% Similarity=0.044 Sum_probs=146.3
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCC-c---ccccccccccccCCCccccCCCCeEEEE
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPL-F---PLSFKVFSSQATGVSAEADELPGRIGFL 77 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~-~---~l~~~~~~~~~~~~~~~~~~~~~~Igii 77 (290)
.+...|+|+.. +++|++++++|++.|+++.+++.+++|.|..... . ....+.+. +++||||
T Consensus 110 ~V~n~~~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~-------------g~tvGII 174 (347)
T 1mx3_A 110 AVCNVPAASVE--ETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIR-------------GETLGII 174 (347)
T ss_dssp EEECCCSTTHH--HHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCT-------------TCEEEEE
T ss_pred eEEECCCCCHH--HHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCC-------------CCEEEEE
Confidence 34455788777 8899999999999999999999999999963210 0 00002333 8999999
Q ss_pred cccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCC
Q 022909 78 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGP 157 (290)
Q Consensus 78 G~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~ 157 (290)
|+|+||+.+|+++.++|++|++||+++++. ...+.|+..+.++++++++||+|++++|.++++++++ +++.++.||+
T Consensus 175 G~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~ 251 (347)
T 1mx3_A 175 GLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLI--NDFTVKQMRQ 251 (347)
T ss_dssp CCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSB--SHHHHTTSCT
T ss_pred eECHHHHHHHHHHHHCCCEEEEECCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHh--HHHHHhcCCC
Confidence 999999999999999999999999987642 2334567666789999999999999999999999999 6778999999
Q ss_pred CCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 158 ~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
++++||++|+.++++++|.++|+++++.....+++..++
T Consensus 252 gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP 290 (347)
T 1mx3_A 252 GAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEP 290 (347)
T ss_dssp TEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS
T ss_pred CCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCC
Confidence 999999999999999999999999988766666666555
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-26 Score=211.67 Aligned_cols=207 Identities=17% Similarity=0.233 Sum_probs=181.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----CCCccCCCHHHHhh---cCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKYQPSPDEVAA---SCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----~g~~~~~~~~~~~~---~aDivv~~~p~~~~~~ 142 (290)
.++|||||+|.||+.+|..|...|++|.+|||++++.+.+.+ .++..+.+++++++ ++|+|++++|.+..++
T Consensus 2 ~m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~ 81 (482)
T 2pgd_A 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (482)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred CCeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHH
Confidence 368999999999999999999999999999999998888876 56777889999875 8999999999877888
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHH
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~ 222 (290)
.++ +++.+.++++.+||+++++.+.+...+.+.+.+.+++++++|+++++.....++ .++.+++++..+.++++|+
T Consensus 82 ~vl---~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~-~i~~gg~~e~~~~v~~ll~ 157 (482)
T 2pgd_A 82 NFI---EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQ 157 (482)
T ss_dssp HHH---HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHH
T ss_pred HHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC-eEEeCCCHHHHHHHHHHHH
Confidence 888 456678899999999999999888888888888889999999998877666666 5577788889999999999
Q ss_pred HhCCcE-------EEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHC-CCCHHHHHHHHhhcCCC
Q 022909 223 IMGKSR-------FYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFV-DFLINTVTMFLQSFSFG 281 (290)
Q Consensus 223 ~~G~~~-------~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~-G~~~~~~~~~i~~~~~g 281 (290)
.+|.++ .++++.|.+.+.|++.|.+.+.+ .+++|++.++++. |++++++.+++..+..|
T Consensus 158 ~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g 225 (482)
T 2pgd_A 158 GIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKT 225 (482)
T ss_dssp HHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTT
T ss_pred HhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCC
Confidence 999876 56788999999999999988777 9999999999999 99999999999765544
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-27 Score=208.66 Aligned_cols=176 Identities=13% Similarity=0.163 Sum_probs=146.1
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+...|+|... +++|++++++|++.|+++.+++.+++|.|..+.......+.+. +++|||||+|.|
T Consensus 102 v~n~~~~~~~--~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~-------------g~~vgIIG~G~i 166 (330)
T 2gcg_A 102 VGYTPDVLTD--TTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLT-------------QSTVGIIGLGRI 166 (330)
T ss_dssp EECCCSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCT-------------TCEEEEECCSHH
T ss_pred EEeCCCCChH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCC-------------CCEEEEECcCHH
Confidence 4445677666 8899999999999999999999999999974321111113444 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
|+.+|+.+..+|++|++||+++++.+...+.++... +++++++++|+|++|+|.++++++++ +++.++.|++++++|
T Consensus 167 G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i--~~~~~~~mk~gailI 243 (330)
T 2gcg_A 167 GQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLC--NKDFFQKMKETAVFI 243 (330)
T ss_dssp HHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCB--SHHHHHHSCTTCEEE
T ss_pred HHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhh--CHHHHhcCCCCcEEE
Confidence 999999999999999999998876666556677666 89999999999999999999999998 566788999999999
Q ss_pred EecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
|+||+.+++++++.++++++++......++.+++
T Consensus 244 n~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~ep 277 (330)
T 2gcg_A 244 NISRGDVVNQDDLYQALASGKIAAAGLDVTSPEP 277 (330)
T ss_dssp ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS
T ss_pred ECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCC
Confidence 9999999999999999999877665555665554
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-27 Score=211.47 Aligned_cols=171 Identities=14% Similarity=0.071 Sum_probs=145.8
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|.... . +.+. +++|||||+|+
T Consensus 93 ~v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~----~-~~l~-------------g~~vgIIG~G~ 152 (313)
T 2ekl_A 93 KVVYAPGASTD--SAVELTIGLMIAAARKMYTSMALAKSGIFKKIE----G-LELA-------------GKTIGIVGFGR 152 (313)
T ss_dssp EEECCTTTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCC----C-CCCT-------------TCEEEEESCSH
T ss_pred EEEeCCCCCch--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC----C-CCCC-------------CCEEEEEeeCH
Confidence 34455777666 889999999999999999999999999996211 1 3444 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++.+|++|++|||++++. ...+.|+... +++++++++|+|++|+|.++++++++ +++.++.|++++++
T Consensus 153 IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~-~l~ell~~aDvVvl~~P~~~~t~~li--~~~~l~~mk~ga~l 228 (313)
T 2ekl_A 153 IGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKAV-SLEELLKNSDVISLHVTVSKDAKPII--DYPQFELMKDNVII 228 (313)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEEC-CHHHHHHHCSEEEECCCCCTTSCCSB--CHHHHHHSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCceec-CHHHHHhhCCEEEEeccCChHHHHhh--CHHHHhcCCCCCEE
Confidence 99999999999999999999998753 3455677654 89999999999999999999999998 66778999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
||++|+.++++++|.++|+++++.....+++..+|
T Consensus 229 In~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP 263 (313)
T 2ekl_A 229 VNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEP 263 (313)
T ss_dssp EESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSS
T ss_pred EECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCC
Confidence 99999999999999999999888766667777665
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-27 Score=207.51 Aligned_cols=170 Identities=11% Similarity=0.003 Sum_probs=140.5
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|..........+.+. +++|||||+|+
T Consensus 90 ~v~n~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~-------------g~~vgIIG~G~ 154 (311)
T 2cuk_A 90 RVTHTPGVLTE--ATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQ-------------GLTLGLVGMGR 154 (311)
T ss_dssp EEECCCSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCT-------------TCEEEEECCSH
T ss_pred EEEECCCCChH--HHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCC-------------CCEEEEEEECH
Confidence 34455777776 8889999999999999999999999999963221111113444 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++.+|++|++|||++++.. + ...+++++++++|+|++|+|.++++++++ +++.++.|++++++
T Consensus 155 IG~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~t~~li--~~~~l~~mk~ga~l 225 (311)
T 2cuk_A 155 IGQAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPETHRLL--NRERLFAMKRGAIL 225 (311)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTTTTTCB--CHHHHTTSCTTCEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChHHHhhc--CHHHHhhCCCCcEE
Confidence 999999999999999999999886543 2 24589999999999999999999999998 56778999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
||++|+.+++++++.++|+ +.+.....+++..++
T Consensus 226 in~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP 259 (311)
T 2cuk_A 226 LNTARGALVDTEALVEALR-GHLFGAGLDVTDPEP 259 (311)
T ss_dssp EECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSS
T ss_pred EECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCC
Confidence 9999999999999999999 877665556666554
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-27 Score=210.79 Aligned_cols=172 Identities=14% Similarity=0.070 Sum_probs=145.3
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+...|+|+.. +++|++++++|++.|+++.+++.+++|.|.+... ...+.+. +++|||||+|.|
T Consensus 95 v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~--~~~~~l~-------------g~~vgIiG~G~I 157 (331)
T 1xdw_A 95 MAFVPRYSPN--AIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAF--MFSKEVR-------------NCTVGVVGLGRI 157 (331)
T ss_dssp EECCCCCCHH--HHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCST--TCCCCGG-------------GSEEEEECCSHH
T ss_pred EEeCCCCCcH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccC--cCccCCC-------------CCEEEEECcCHH
Confidence 4445778777 7889999999999999999999999999963111 1113455 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
|+.+|++++.+|++|++|||++++. +. ..+. ..++++++++||+|++|+|.++++++++ +++.++.||+++++|
T Consensus 158 G~~~A~~l~~~G~~V~~~d~~~~~~--~~-~~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li--~~~~l~~mk~ga~li 231 (331)
T 1xdw_A 158 GRVAAQIFHGMGATVIGEDVFEIKG--IE-DYCT-QVSLDEVLEKSDIITIHAPYIKENGAVV--TRDFLKKMKDGAILV 231 (331)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCCCS--CT-TTCE-ECCHHHHHHHCSEEEECCCCCTTTCCSB--CHHHHHTSCTTEEEE
T ss_pred HHHHHHHHHHCCCEEEEECCCccHH--HH-hccc-cCCHHHHHhhCCEEEEecCCchHHHHHh--CHHHHhhCCCCcEEE
Confidence 9999999999999999999987653 22 2233 3489999999999999999999999999 677899999999999
Q ss_pred EecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
|+||+.++++++|.++|+++++.....+++..|+.
T Consensus 232 n~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~ 266 (331)
T 1xdw_A 232 NCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEAS 266 (331)
T ss_dssp ECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGG
T ss_pred ECCCcccccHHHHHHHHHhCCceEEEEecCCCCCC
Confidence 99999999999999999999988888888887763
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-27 Score=210.92 Aligned_cols=171 Identities=13% Similarity=0.150 Sum_probs=144.1
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|... ..... +.+. +++|||||+|+
T Consensus 112 ~v~n~pg~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~-~~~~~-~~l~-------------g~~vgIIG~G~ 174 (333)
T 3ba1_A 112 RVTNTPDVLTD--DVADLAIGLILAVLRRICECDKYVRRGAWKFG-DFKLT-TKFS-------------GKRVGIIGLGR 174 (333)
T ss_dssp EEECCCSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGC-CCCCC-CCCT-------------TCCEEEECCSH
T ss_pred EEEECCCcchH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcc-ccccc-cccC-------------CCEEEEECCCH
Confidence 34455777776 88999999999999999999999999999632 11112 3444 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|+++..+|++|++|||++++.. +.....+++++++++|+|++++|.++++++++ +++.++.|++++++
T Consensus 175 iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~~~~l~ell~~aDvVil~vP~~~~t~~li--~~~~l~~mk~gail 247 (333)
T 3ba1_A 175 IGLAVAERAEAFDCPISYFSRSKKPNT-----NYTYYGSVVELASNSDILVVACPLTPETTHII--NREVIDALGPKGVL 247 (333)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSCCTTC-----CSEEESCHHHHHHTCSEEEECSCCCGGGTTCB--CHHHHHHHCTTCEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCchhcc-----CceecCCHHHHHhcCCEEEEecCCChHHHHHh--hHHHHhcCCCCCEE
Confidence 999999999999999999999876532 45556789999999999999999999999998 66778899999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
||++|+.++++++|.++|+++++.....+++..++
T Consensus 248 In~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP 282 (333)
T 3ba1_A 248 INIGRGPHVDEPELVSALVEGRLGGAGLDVFEREP 282 (333)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTT
T ss_pred EECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCC
Confidence 99999999999999999999888766666666555
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=207.90 Aligned_cols=204 Identities=21% Similarity=0.306 Sum_probs=178.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-C-------CccCCCHHHHhhc---CCeEEEEeCChhH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G-------AKYQPSPDEVAAS---CDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g-------~~~~~~~~~~~~~---aDivv~~~p~~~~ 140 (290)
|+|||||+|.||+.+|..|...|++|.+|||++++.+.+.+. | +..+.++++++++ +|+|++++|.+..
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence 579999999999999999999999999999999888777653 5 5667789998875 9999999998778
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHH
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 220 (290)
++.++ +++.+.++++.+||+++++.+.+...+.+.+.+.+++++++|+++++.....++ .++.+++++..+.++++
T Consensus 82 v~~vl---~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~l 157 (478)
T 1pgj_A 82 TDSTI---EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPI 157 (478)
T ss_dssp HHHHH---HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHHH
T ss_pred HHHHH---HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC-eEeccCCHHHHHHHHHH
Confidence 88887 456677889999999999998888888888888889999999988776555666 56778889999999999
Q ss_pred HHHhCCc-------EEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcC
Q 022909 221 LDIMGKS-------RFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFS 279 (290)
Q Consensus 221 l~~~G~~-------~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~ 279 (290)
|+.+|.. +.++++.|.+.+.|++.|.+.+.+ ..++|++.++++.|++++++.+++..+.
T Consensus 158 l~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~ 224 (478)
T 1pgj_A 158 VEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWK 224 (478)
T ss_dssp HHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 9999987 677888999999999999888777 9999999999999999999999997543
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-27 Score=210.49 Aligned_cols=172 Identities=14% Similarity=0.099 Sum_probs=144.3
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|+.. +++|++++++|++.|+++.+++.+++|.|.+.... ..+.+. +++|||||+|+
T Consensus 93 ~v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~--~~~~l~-------------g~~vgIiG~G~ 155 (333)
T 1dxy_A 93 RLSNVPAYSPA--AIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF--IGKELG-------------QQTVGVMGTGH 155 (333)
T ss_dssp EEECCTTSCHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCC--CCCCGG-------------GSEEEEECCSH
T ss_pred EEEeCCCCCch--HHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCC--CccCCC-------------CCEEEEECcCH
Confidence 34445778777 88899999999999999999999999998520111 113455 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++.+|++|++|||++++. .. ..... .++++++++||+|++|+|.+++|++++ +++.++.||+++++
T Consensus 156 IG~~~A~~l~~~G~~V~~~d~~~~~~--~~-~~~~~-~~l~ell~~aDvV~~~~P~~~~t~~li--~~~~l~~mk~ga~l 229 (333)
T 1dxy_A 156 IGQVAIKLFKGFGAKVIAYDPYPMKG--DH-PDFDY-VSLEDLFKQSDVIDLHVPGIEQNTHII--NEAAFNLMKPGAIV 229 (333)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSS--CC-TTCEE-CCHHHHHHHCSEEEECCCCCGGGTTSB--CHHHHHHSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchh--hH-hcccc-CCHHHHHhcCCEEEEcCCCchhHHHHh--CHHHHhhCCCCcEE
Confidence 99999999999999999999987643 11 12333 489999999999999999999999999 67789999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
||+||+.++++++|.++|+++++.....+++..|+
T Consensus 230 In~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 264 (333)
T 1dxy_A 230 INTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 264 (333)
T ss_dssp EECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred EECCCCcccCHHHHHHHHHhCCccEEEEecCCCCC
Confidence 99999999999999999999988877778887765
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-27 Score=210.50 Aligned_cols=177 Identities=13% Similarity=0.090 Sum_probs=147.2
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCC---CCCCCC--cccccccccccccCCCccccCCCCeEEE
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINS---LPTKPL--FPLSFKVFSSQATGVSAEADELPGRIGF 76 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~---w~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~Igi 76 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|. |..... .... +.+. +++|||
T Consensus 105 ~v~n~p~~~~~--~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~-~~l~-------------g~~vgI 168 (348)
T 2w2k_A 105 AFANSRGAGDT--ATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSA-HNPR-------------GHVLGA 168 (348)
T ss_dssp EEECCTTTTHH--HHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTC-CCST-------------TCEEEE
T ss_pred EEEECCCCCcH--HHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccC-cCCC-------------CCEEEE
Confidence 34445777766 8899999999999999999999999999 941100 0111 3344 899999
Q ss_pred EcccHhHHHHHHHHH-HCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccC
Q 022909 77 LGMGIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGM 155 (290)
Q Consensus 77 iG~G~iG~~la~~l~-~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~ 155 (290)
||+|+||+.+|++++ .+|++|++|||++++.+...+.|+....++++++++||+|++|+|.++++++++ +++.++.|
T Consensus 169 IG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li--~~~~l~~m 246 (348)
T 2w2k_A 169 VGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLI--DEAFFAAM 246 (348)
T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCB--CHHHHHHS
T ss_pred EEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHh--hHHHHhcC
Confidence 999999999999999 999999999999876655555577766689999999999999999999999998 56778899
Q ss_pred CCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 156 GPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 156 ~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
+++++|||++|+.++++++|.++|+++.+.....+++..++
T Consensus 247 k~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP 287 (348)
T 2w2k_A 247 KPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP 287 (348)
T ss_dssp CTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT
T ss_pred CCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC
Confidence 99999999999999999999999998777666677777654
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-26 Score=206.57 Aligned_cols=176 Identities=9% Similarity=0.021 Sum_probs=144.7
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCC----CCCCcccccccccccccCCCccccCCCCeEEEE
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLP----TKPLFPLSFKVFSSQATGVSAEADELPGRIGFL 77 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Igii 77 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|. .+.......+.+. +++||||
T Consensus 92 ~v~n~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~-------------g~~vgII 156 (334)
T 2dbq_A 92 YVTNTPDVLTD--ATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVY-------------GKTIGII 156 (334)
T ss_dssp EEECCCSTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCT-------------TCEEEEE
T ss_pred EEEeCCCcCHH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCC-------------CCEEEEE
Confidence 34445777666 889999999999999999999999999995 2111111113444 8999999
Q ss_pred cccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCC
Q 022909 78 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGP 157 (290)
Q Consensus 78 G~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~ 157 (290)
|+|.||+.+|+.++.+|++|++|||++++ +...+.|+.. .+++++++++|+|++|+|.+.++++++ +++.++.|++
T Consensus 157 G~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i--~~~~~~~mk~ 232 (334)
T 2dbq_A 157 GLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLI--NEERLKLMKK 232 (334)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCB--CHHHHHHSCT
T ss_pred ccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhh--CHHHHhcCCC
Confidence 99999999999999999999999999876 4444556665 489999999999999999999899988 5567889999
Q ss_pred CCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 158 ~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
++++||+||+.++++++|.++++++.+.....+++..++
T Consensus 233 ~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP 271 (334)
T 2dbq_A 233 TAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEP 271 (334)
T ss_dssp TCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS
T ss_pred CcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCC
Confidence 999999999999999999999999888776666776654
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=211.94 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=157.9
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|+++|+++++++.+++|.|.+.. + .. .++. +++|||||+|+
T Consensus 91 ~v~n~p~~~~~--~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~-~-~~-~~l~-------------g~~vgIIG~G~ 152 (529)
T 1ygy_A 91 LVVNAPTSNIH--SAAEHALALLLAASRQIPAADASLREHTWKRSS-F-SG-TEIF-------------GKTVGVVGLGR 152 (529)
T ss_dssp EEECCTTSSHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGG-C-CB-CCCT-------------TCEEEEECCSH
T ss_pred EEEECCCcchH--HHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccC-c-Cc-cccC-------------CCEEEEEeeCH
Confidence 34445666666 889999999999999999999999999997421 1 11 3444 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++++|++|++||+++. .+...+.|+... ++++++++||+|++|+|.++++++++ +++.++.|++++++
T Consensus 153 IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i--~~~~~~~~k~g~il 228 (529)
T 1ygy_A 153 IGQLVAQRIAAFGAYVVAYDPYVS-PARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLI--DKEALAKTKPGVII 228 (529)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTSC-HHHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHTTSCTTEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHHHh--CHHHHhCCCCCCEE
Confidence 999999999999999999999874 344455677765 89999999999999999998999998 55678899999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccc----cCCceEEEe---c-CCHHHHHH-----HHHHHHHhCCc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA----EDGQLIFLA---A-GDKSLYNT-----VAPLLDIMGKS 227 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~----~~~~~~~~~---~-~~~~~~~~-----v~~ll~~~G~~ 227 (290)
||++++.++++.+|.++++++++.....++++.+|.. ...+.++++ + .+.++.+. ++++.+.++..
T Consensus 229 in~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~ 307 (529)
T 1ygy_A 229 VNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGE 307 (529)
T ss_dssp EECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999877665555556555432 122334444 2 34555543 55666666543
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-24 Score=195.31 Aligned_cols=202 Identities=13% Similarity=0.068 Sum_probs=168.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC------------------CCccCCCHHHHhhcCCeEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL------------------GAKYQPSPDEVAASCDVTF 132 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~------------------g~~~~~~~~~~~~~aDivv 132 (290)
.|+|+|||+|.||..+|..|+. |++|++||+++++.+.+.+. ++..+++++++++++|+|+
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDvVi 114 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVI 114 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCEEE
Confidence 5899999999999999999988 99999999999887766541 3556678889999999999
Q ss_pred EEeCChh----------HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCc
Q 022909 133 AMLADPE----------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQ 202 (290)
Q Consensus 133 ~~~p~~~----------~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~ 202 (290)
+++|.+. .++.++ +.+.+ +++++++|+.|+..+...+.+.+.+.+.+ ++.+|.+..+..+..+.
T Consensus 115 iaVPt~~~~~~~~~Dl~~V~~v~---~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~--v~~sPe~~~~G~A~~~~ 188 (432)
T 3pid_A 115 IATPTDYDPKTNYFNTSTVEAVI---RDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDN--VIFSPEFLREGRALYDN 188 (432)
T ss_dssp ECCCCEEETTTTEEECHHHHHHH---HHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCC--EEECCCCCCTTSHHHHH
T ss_pred EeCCCccccccccccHHHHHHHH---HHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhcc--EeecCccCCcchhhhcc
Confidence 9999863 344544 45667 89999999999999999999998887653 45599998877654333
Q ss_pred e---EEEecCCHHHHHHHHHHHHH--hCC-cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHH
Q 022909 203 L---IFLAAGDKSLYNTVAPLLDI--MGK-SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFL 275 (290)
Q Consensus 203 ~---~~~~~~~~~~~~~v~~ll~~--~G~-~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i 275 (290)
+ .+++|++++..+.+.++|.. ++. .++++++.+.|++.|++.|.+.+.. ..++|+..+|++.|+|++++.+++
T Consensus 189 l~p~rIvvG~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~GiD~~~v~~~~ 268 (432)
T 3pid_A 189 LHPSRIVIGERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQGLNSKQIIEGV 268 (432)
T ss_dssp HSCSCEEESSCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCCceEEecCCHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 67888888888999999987 443 2466788999999999999999998 999999999999999999999999
Q ss_pred hhcC
Q 022909 276 QSFS 279 (290)
Q Consensus 276 ~~~~ 279 (290)
..-.
T Consensus 269 ~~dp 272 (432)
T 3pid_A 269 CLDP 272 (432)
T ss_dssp HTST
T ss_pred ccCC
Confidence 7543
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=186.66 Aligned_cols=197 Identities=18% Similarity=0.273 Sum_probs=161.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeC--CccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR--TKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~--~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
|+|+|||+|+||..+++.|...|++|++||+ +++..+.+.+.|+. ++.+++++++|+|++++|.+...+.+.
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~~---- 74 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAAR---- 74 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHHH----
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHHH----
Confidence 5799999999999999999999999999998 55556666666766 678888999999999999866665542
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEE
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF 229 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~ 229 (290)
++.+.+++ ++|+++++.+.+.+.+.+.+.+.+ |+++|+++++.....+.+ ++++++++ +.+++ |+.+|+.++
T Consensus 75 ~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~-~~~~g~~~--~~~~~-l~~~g~~~~ 146 (264)
T 1i36_A 75 RAGRHVRG--IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIR-IIASGRDA--EEFMK-LNRYGLNIE 146 (264)
T ss_dssp HHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCE-EEEESTTH--HHHHG-GGGGTCEEE
T ss_pred HHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCe-EEecCCcH--HHhhh-HHHcCCeeE
Confidence 34556666 999999998888888888887665 888899887665555666 66666655 78888 999999888
Q ss_pred EeCC-cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCc
Q 022909 230 YLGD-VGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNL 283 (290)
Q Consensus 230 ~~~~-~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~ 283 (290)
++++ .+.+.+.|++.|.+.+.+ ..+.|++.++++.|++++ +.+.+.++.+.++
T Consensus 147 ~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g~~~ 201 (264)
T 1i36_A 147 VRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDF 201 (264)
T ss_dssp ECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSST
T ss_pred ECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcCccH
Confidence 8887 799999999999887777 999999999999999997 7788888763343
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-24 Score=195.67 Aligned_cols=206 Identities=15% Similarity=0.102 Sum_probs=170.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------------------CCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDi 130 (290)
.-+|+|||+|.||..+|..|+..|++|++||+++++.+.+.+. ++..++++.+++++||+
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv 87 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA 87 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence 4789999999999999999999999999999999988877552 24556788899999999
Q ss_pred EEEEeCChh----------HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcC----CcEEeCccCCCCc
Q 022909 131 TFAMLADPE----------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKK 196 (290)
Q Consensus 131 vv~~~p~~~----------~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~----~~~~~~p~~~~~~ 196 (290)
|++|+|.+. .++.++ +.+.+.+++++++|+.|+..+...+.+.+.+.+.+ ..++..|.+..+.
T Consensus 88 vii~Vptp~~~~~~~~Dl~~v~~v~---~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~~d~~v~~~Pe~a~eG 164 (446)
T 4a7p_A 88 VFIAVGTPSRRGDGHADLSYVFAAA---REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFLREG 164 (446)
T ss_dssp EEECCCCCBCTTTCCBCTHHHHHHH---HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTTSCCEEEECCCCCCTT
T ss_pred EEEEcCCCCccccCCccHHHHHHHH---HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCCCCceEEeCccccccc
Confidence 999998874 366666 45678899999999999999999999988887753 5566677665544
Q ss_pred ccc---CCceEEEecC-CHHHHHHHHHHHHHhCCc---EEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCH
Q 022909 197 PAE---DGQLIFLAAG-DKSLYNTVAPLLDIMGKS---RFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLI 268 (290)
Q Consensus 197 ~~~---~~~~~~~~~~-~~~~~~~v~~ll~~~G~~---~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~ 268 (290)
... ..+..+++|+ ++++.+.++++++.++.. ++++++.+.++..|++.|.+.+.. .+++|+..+|++.|+|+
T Consensus 165 ~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~GiD~ 244 (446)
T 4a7p_A 165 AAIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLCEQVGADV 244 (446)
T ss_dssp SHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred chhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 320 1122455665 478899999999998874 578899999999999999999999 99999999999999999
Q ss_pred HHHHHHHhhcC
Q 022909 269 NTVTMFLQSFS 279 (290)
Q Consensus 269 ~~~~~~i~~~~ 279 (290)
+++.+++..-.
T Consensus 245 ~~v~~~~~~~~ 255 (446)
T 4a7p_A 245 QEVSRGIGMDN 255 (446)
T ss_dssp HHHHHHHHTST
T ss_pred HHHHHHHhcCC
Confidence 99999998865
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-26 Score=203.55 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=141.9
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccc---cccccccccCCCccccCCCCeEEEEcc
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLS---FKVFSSQATGVSAEADELPGRIGFLGM 79 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~IgiiG~ 79 (290)
+...|+|... +++|++++++|++.|+++.+++.+++|.|......... .+.+. +++|||||+
T Consensus 90 v~n~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~-------------g~~vgIIG~ 154 (333)
T 2d0i_A 90 VTKVSGLLSE--AVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLY-------------GKKVGILGM 154 (333)
T ss_dssp EECCCHHHHH--HHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCST-------------TCEEEEECC
T ss_pred EEeCCCcChH--HHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCC-------------cCEEEEEcc
Confidence 4445677666 88899999999999999999999999999631100000 02333 899999999
Q ss_pred cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCC
Q 022909 80 GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGK 159 (290)
Q Consensus 80 G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~ 159 (290)
|.||+.+|+.++.+|++|++|||++++ +...+.|+... ++++++++||+|++|+|.++++++++ +++.++.|+++
T Consensus 155 G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i--~~~~~~~mk~g- 229 (333)
T 2d0i_A 155 GAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHII--NEERVKKLEGK- 229 (333)
T ss_dssp SHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTTTTTSB--CHHHHHHTBTC-
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCChHHHHHh--CHHHHhhCCCC-
Confidence 999999999999999999999999875 44444566554 89999999999999999998999998 55678889999
Q ss_pred EEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 160 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 160 ~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
++||+||+.+++++++.++++++.+.....++++.++
T Consensus 230 ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP 266 (333)
T 2d0i_A 230 YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEP 266 (333)
T ss_dssp EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSS
T ss_pred EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCC
Confidence 9999999999999999999998877766667776554
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=200.19 Aligned_cols=207 Identities=15% Similarity=0.152 Sum_probs=165.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHh-------------------CCCccCCCHHHHhhcCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCD 129 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aD 129 (290)
.|+|+|||+|.||..+|..|+.. |++|++||+++++.+.+.+ .++..+++++++++++|
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD 84 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD 84 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence 47999999999999999999988 8999999999887766432 23555678888899999
Q ss_pred eEEEEeCChhHH--------------HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCC
Q 022909 130 VTFAMLADPESA--------------MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK 195 (290)
Q Consensus 130 ivv~~~p~~~~~--------------~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~ 195 (290)
+|++|+|.+... .... +++.+.+++++++|+.|+..+...+.+.+.+++.+..+++.++...+
T Consensus 85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~P 161 (467)
T 2q3e_A 85 LVFISVNTPTKTYGMGKGRAADLKYIEACA---RRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNP 161 (467)
T ss_dssp EEEECCCCCBCCSSTTTTTSBCCHHHHHHH---HHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred EEEEEcCCchhhccccccCCCcHHHHHHHH---HHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCH
Confidence 999999876542 2232 34566789999999999999999988988888765434444444444
Q ss_pred ccccCCceE--------EEecC-----CHHHHHHHHHHHHHh-CCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHH
Q 022909 196 KPAEDGQLI--------FLAAG-----DKSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLT 260 (290)
Q Consensus 196 ~~~~~~~~~--------~~~~~-----~~~~~~~v~~ll~~~-G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l 260 (290)
.....+... +++++ +++..+.++++++.+ |..++++++.+.+.+.|++.|.+.+.+ ..++|+..+
T Consensus 162 e~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l 241 (467)
T 2q3e_A 162 EFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL 241 (467)
T ss_dssp CCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334332 45565 678889999999999 777888999999999999999998888 999999999
Q ss_pred HHHCCCCHHHHHHHHhhcCC
Q 022909 261 LEFVDFLINTVTMFLQSFSF 280 (290)
Q Consensus 261 ~~~~G~~~~~~~~~i~~~~~ 280 (290)
+++.|+|++++.+++.....
T Consensus 242 ~~~~Gid~~~v~~~~~~~~~ 261 (467)
T 2q3e_A 242 CEATGADVEEVATAIGMDQR 261 (467)
T ss_dssp HHHHTCCHHHHHHHHHTSTT
T ss_pred HHHhCcCHHHHHHHHcCCCC
Confidence 99999999999999998654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=192.39 Aligned_cols=206 Identities=17% Similarity=0.150 Sum_probs=167.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------------------CCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDi 130 (290)
.|+|+|||+|.||..+|..|+..|++|++||+++++.+.+.+. ++..+++++++++++|+
T Consensus 2 ~mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDv 81 (450)
T 3gg2_A 2 SLDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADI 81 (450)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSE
T ss_pred CCEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCE
Confidence 4799999999999999999999999999999999887776551 23456788889999999
Q ss_pred EEEEeCChh---------HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcC--------CcEEeCccCC
Q 022909 131 TFAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG--------ASFLEAPVSG 193 (290)
Q Consensus 131 vv~~~p~~~---------~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~--------~~~~~~p~~~ 193 (290)
|++++|.+. .++.++ +++.+.+++++++|+.|+..+...+.+.+.+.+.+ ..++..|.+.
T Consensus 82 ViiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a 158 (450)
T 3gg2_A 82 IFIAVGTPAGEDGSADMSYVLDAA---RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFL 158 (450)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCC
T ss_pred EEEEcCCCcccCCCcChHHHHHHH---HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhhh
Confidence 999999864 566666 45677889999999999999999888888776531 3445567665
Q ss_pred CCcccc---CCceEEEec-CCHHHHHHHHHHHHHhCC--cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCC
Q 022909 194 SKKPAE---DGQLIFLAA-GDKSLYNTVAPLLDIMGK--SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDF 266 (290)
Q Consensus 194 ~~~~~~---~~~~~~~~~-~~~~~~~~v~~ll~~~G~--~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~ 266 (290)
.+.... ..+..+++| .++++.+.++++++.++. .++++++.+.+++.|++.|.+.+++ .+++|+..+|++.|+
T Consensus 159 ~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gi 238 (450)
T 3gg2_A 159 KEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCERVGA 238 (450)
T ss_dssp CTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 443321 112234555 468899999999999986 3678889999999999999999999 999999999999999
Q ss_pred CHHHHHHHHhhcC
Q 022909 267 LINTVTMFLQSFS 279 (290)
Q Consensus 267 ~~~~~~~~i~~~~ 279 (290)
|++++.+++....
T Consensus 239 d~~~v~~~~~~~~ 251 (450)
T 3gg2_A 239 DVSMVRLGIGSDS 251 (450)
T ss_dssp CHHHHHHHHHTST
T ss_pred CHHHHHHHHcCCC
Confidence 9999999999764
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-24 Score=196.22 Aligned_cols=208 Identities=18% Similarity=0.133 Sum_probs=169.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CC-eEEEEeCCcc----chhhHHhC---------------------C-CccCCCHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GC-DVTVWNRTKS----KCDPLISL---------------------G-AKYQPSPD 122 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~-~V~~~d~~~~----~~~~~~~~---------------------g-~~~~~~~~ 122 (290)
.|+|+|||+|.||..+|..|+.. |+ +|++||++++ +.+.+.+. + +..+++ .
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~ 96 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-F 96 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-G
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-H
Confidence 58999999999999999999999 99 9999999998 66655431 1 233445 6
Q ss_pred HHhhcCCeEEEEeCChh--------HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHH--HcC------CcE
Q 022909 123 EVAASCDVTFAMLADPE--------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK--ATG------ASF 186 (290)
Q Consensus 123 ~~~~~aDivv~~~p~~~--------~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~--~~~------~~~ 186 (290)
++++++|+|++++|.+. ++..+....+.+.+.+++++++|+.|+..+...+.+.+.+. ..+ +.+
T Consensus 97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~~d~~v 176 (478)
T 3g79_A 97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFAL 176 (478)
T ss_dssp GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBTTTBEE
T ss_pred HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcCCceeE
Confidence 78899999999999873 33333322355677899999999999999999988876432 233 467
Q ss_pred EeCccCCCCccccCC---ceEEEecCCHHHHHHHHHHHHHh-CCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 022909 187 LEAPVSGSKKPAEDG---QLIFLAAGDKSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTL 261 (290)
Q Consensus 187 ~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~ll~~~-G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~ 261 (290)
+++|.+..+..+..+ +..++.|++++..+.++++++.+ +..++++++.+.++..|++.|.+.+.. ..++|+..+|
T Consensus 177 ~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~Ia~~nE~~~l~ 256 (478)
T 3g79_A 177 AHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAINQLALYC 256 (478)
T ss_dssp EECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889988766554222 22567888999999999999999 888999999999999999999999998 9999999999
Q ss_pred HHCCCCHHHHHHHHhhcC
Q 022909 262 EFVDFLINTVTMFLQSFS 279 (290)
Q Consensus 262 ~~~G~~~~~~~~~i~~~~ 279 (290)
++.|+|++++.++++.-.
T Consensus 257 e~~GiD~~~v~~~~~~~~ 274 (478)
T 3g79_A 257 EAMGINVYDVRTGVDSLK 274 (478)
T ss_dssp HHTTCCHHHHHHHHHTSC
T ss_pred HHcCCCHHHHHHHHCCCc
Confidence 999999999999998754
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-23 Score=187.98 Aligned_cols=209 Identities=14% Similarity=0.108 Sum_probs=168.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-CCHHHH---------------hhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-PSPDEV---------------AASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~~~~~~---------------~~~aDivv~~ 134 (290)
+.++.|||+|.||..+|..|+..|++|++||+++++.+.+.+...... ..++++ +++||+|++|
T Consensus 11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvii~ 90 (431)
T 3ojo_A 11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIA 90 (431)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEEEC
T ss_pred CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEEEE
Confidence 789999999999999999999999999999999999888776322111 122222 3579999999
Q ss_pred eCChhH--------HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHH-cC------CcEEeCccCCCCcccc
Q 022909 135 LADPES--------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA-TG------ASFLEAPVSGSKKPAE 199 (290)
Q Consensus 135 ~p~~~~--------~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~-~~------~~~~~~p~~~~~~~~~ 199 (290)
+|++.. ++.+....+.+.+.+++++++|+.|+..+...+++.+.+.+ .+ +.++++|.+..+..+.
T Consensus 91 VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~G~A~ 170 (431)
T 3ojo_A 91 VPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKIL 170 (431)
T ss_dssp CCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCCCCCTTSHH
T ss_pred eCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCCcCCCcchh
Confidence 998762 22333223567788999999999999999999998876544 44 3678899887665432
Q ss_pred C---CceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHH
Q 022909 200 D---GQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFL 275 (290)
Q Consensus 200 ~---~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i 275 (290)
. .+..++.|+++++.+.++++++.++..++++++.+.|++.|+++|.+.+.. +.++|+..+|++.|+|++++.+++
T Consensus 171 ~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~ 250 (431)
T 3ojo_A 171 EELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMA 250 (431)
T ss_dssp HHHHHSCEEEEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hcccCCCEEEEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 233567888899999999999999988888899999999999999999998 999999999999999999999999
Q ss_pred hhcC
Q 022909 276 QSFS 279 (290)
Q Consensus 276 ~~~~ 279 (290)
+.-.
T Consensus 251 ~~~~ 254 (431)
T 3ojo_A 251 NKHP 254 (431)
T ss_dssp TTST
T ss_pred ccCC
Confidence 8654
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-24 Score=194.84 Aligned_cols=153 Identities=11% Similarity=0.072 Sum_probs=128.6
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+. | ..+. +++|||||+|+
T Consensus 86 ~v~n~pg~~~~--~VAE~~l~~lL~l~r~~---------g------------~~l~-------------gktvGIIGlG~ 129 (381)
T 3oet_A 86 GFSAAPGCNAI--AVVEYVFSALLMLAERD---------G------------FSLR-------------DRTIGIVGVGN 129 (381)
T ss_dssp EEECCTTTTHH--HHHHHHHHHHHHHHHHT---------T------------CCGG-------------GCEEEEECCSH
T ss_pred EEEECCCcCcc--hhHHHHHHHHHHHHHhc---------C------------CccC-------------CCEEEEEeECH
Confidence 45556777776 88888888888877752 1 1233 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhH----HHHHhcccccccccCCC
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES----AMDVACGKHGAASGMGP 157 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~----~~~~~~~~~~~~~~~~~ 157 (290)
||+.+|+++.++|++|++||++.+.. .. .....++++++++||+|++|+|.+++ |++++ +++.++.||+
T Consensus 130 IG~~vA~~l~a~G~~V~~~d~~~~~~----~~-~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li--~~~~l~~mk~ 202 (381)
T 3oet_A 130 VGSRLQTRLEALGIRTLLCDPPRAAR----GD-EGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLA--DETLIRRLKP 202 (381)
T ss_dssp HHHHHHHHHHHTTCEEEEECHHHHHT----TC-CSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSB--CHHHHHHSCT
T ss_pred HHHHHHHHHHHCCCEEEEECCChHHh----cc-CcccCCHHHHHhhCCEEEEcCcCCccccccchhhc--CHHHHhcCCC
Confidence 99999999999999999999854321 12 23456899999999999999999999 99999 7788999999
Q ss_pred CCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 158 ~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
|+++||+||+.++++++|.++|+++++.....+++..|+.
T Consensus 203 gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~ 242 (381)
T 3oet_A 203 GAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPD 242 (381)
T ss_dssp TEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTS
T ss_pred CcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCC
Confidence 9999999999999999999999999998888888887764
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-22 Score=185.65 Aligned_cols=206 Identities=17% Similarity=0.137 Sum_probs=163.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHhC-------------------CCccCCCHHHHhhcCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISL-------------------GAKYQPSPDEVAASCD 129 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~aD 129 (290)
.|+|+|||+|.||..+|..|+.. |++|++||+++++.+.+.+. ++..++++.+.++++|
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aD 88 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEAD 88 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCC
Confidence 47999999999999999999987 79999999999887766542 2344556778889999
Q ss_pred eEEEEeCChh--------------HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHH-cC----C--cEEe
Q 022909 130 VTFAMLADPE--------------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA-TG----A--SFLE 188 (290)
Q Consensus 130 ivv~~~p~~~--------------~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~-~~----~--~~~~ 188 (290)
+|++++|.+. .+..++ +.+.+.+++++++|+.|+..+...+.+.+.+.+ .+ . .+..
T Consensus 89 vvii~Vptp~~~~g~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~~ 165 (481)
T 2o3j_A 89 LIFISVNTPTKMYGRGKGMAPDLKYVESVS---RTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLS 165 (481)
T ss_dssp EEEECCCCCBCCSSTTTTTSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEEE
T ss_pred EEEEecCCccccccccccCCCcHHHHHHHH---HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEEe
Confidence 9999998764 255554 456677899999999999999999888888877 44 2 2455
Q ss_pred CccCCCCcccc---CCceEEEecCCH-----HHHHHHHHHHHHhCC-cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHH
Q 022909 189 APVSGSKKPAE---DGQLIFLAAGDK-----SLYNTVAPLLDIMGK-SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSF 258 (290)
Q Consensus 189 ~p~~~~~~~~~---~~~~~~~~~~~~-----~~~~~v~~ll~~~G~-~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~ 258 (290)
+|.+..+.... ..+..+++|+++ ++.+.++++++.++. .++++++.+.+++.|++.|.+.+.+ ..++|+.
T Consensus 166 ~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~~ 245 (481)
T 2o3j_A 166 NPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSIS 245 (481)
T ss_dssp CCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665544321 111123444432 577889999999996 7888899999999999999999888 9999999
Q ss_pred HHHHHCCCCHHHHHHHHhhcC
Q 022909 259 LTLEFVDFLINTVTMFLQSFS 279 (290)
Q Consensus 259 ~l~~~~G~~~~~~~~~i~~~~ 279 (290)
.+|++.|+|++++.+++....
T Consensus 246 ~la~~~Gid~~~v~~~~~~~~ 266 (481)
T 2o3j_A 246 AVCEATGAEISEVAHAVGYDT 266 (481)
T ss_dssp HHHHHHSCCHHHHHHHHHTST
T ss_pred HHHHHhCcCHHHHHHHHccCC
Confidence 999999999999999998864
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=184.59 Aligned_cols=203 Identities=17% Similarity=0.085 Sum_probs=158.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-------------------C-CccCCCHHHHhhcCCeE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------------------G-AKYQPSPDEVAASCDVT 131 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~aDiv 131 (290)
|+|+|||+|.||..+|..|+..|++|++||+++++.+.+.+. + +..+++++++++++|+|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv 80 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence 589999999999999999999999999999999887776552 2 44566888889999999
Q ss_pred EEEeCChhH---------HHHHhcccccccccCCC---CCEEEEecCCChhH-HHHHHHHHHHc-CCc------EEeCcc
Q 022909 132 FAMLADPES---------AMDVACGKHGAASGMGP---GKGYVDVSTVDGDT-SKLINGHIKAT-GAS------FLEAPV 191 (290)
Q Consensus 132 v~~~p~~~~---------~~~~~~~~~~~~~~~~~---~~~lin~s~~~~~~-~~~l~~~l~~~-~~~------~~~~p~ 191 (290)
++|+|.+.. ++.++ +++.+.+++ ++++|+.|+..+.. .+.+.+.+++. +.. +...|.
T Consensus 81 iiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe 157 (436)
T 1mv8_A 81 FICVGTPSKKNGDLDLGYIETVC---REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPE 157 (436)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH---HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCC
T ss_pred EEEcCCCcccCCCcchHHHHHHH---HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECcc
Confidence 999998765 66666 445667788 99999999988887 67777777663 432 233444
Q ss_pred CCCCcccc---CCceEEEecC-CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCC
Q 022909 192 SGSKKPAE---DGQLIFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDF 266 (290)
Q Consensus 192 ~~~~~~~~---~~~~~~~~~~-~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~ 266 (290)
+..+.... ..+..++.++ +++..+.++++++.+|..++ .++.+.+.+.|++.|.+.+.+ ..++|+..++++.|+
T Consensus 158 ~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~-~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gi 236 (436)
T 1mv8_A 158 FLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPII-RKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGV 236 (436)
T ss_dssp CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEE-EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEE-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 43332210 0111234444 48888999999999998554 478899999999999998888 999999999999999
Q ss_pred CHHHHHHHHhhc
Q 022909 267 LINTVTMFLQSF 278 (290)
Q Consensus 267 ~~~~~~~~i~~~ 278 (290)
+.+++.+++...
T Consensus 237 d~~~v~~~~~~~ 248 (436)
T 1mv8_A 237 DGREVMDVICQD 248 (436)
T ss_dssp CHHHHHHHHTTC
T ss_pred CHHHHHHHhcCC
Confidence 999999999863
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.1e-23 Score=176.65 Aligned_cols=206 Identities=15% Similarity=0.170 Sum_probs=155.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhC-CCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+|+|+|||+|.||..+++.|...|++ |.+|||++++.+.+.+. |+....+++++++++|+|++++|.+ ....++
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~--- 85 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAELL--- 85 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHHH---
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHHH---
Confidence 57999999999999999999999998 89999999887777663 7777788989899999999999875 557776
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcE
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR 228 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~ 228 (290)
+++.+.+++++++|+++++.+.+. +.+.+.+.+..+...|+.+++.........++.+++++.++.++++++.+|+++
T Consensus 86 ~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~g~~~ 163 (266)
T 3d1l_A 86 QGIVEGKREEALMVHTAGSIPMNV--WEGHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRV 163 (266)
T ss_dssp HHHHTTCCTTCEEEECCTTSCGGG--STTTCSSEEEEEECCCC---CCCCCTTCCEEEEESSHHHHHHHHHHHHTTCSCE
T ss_pred HHHHhhcCCCcEEEECCCCCchHH--HHHHHHhccCcCCceecCCCchhhcCCCeEEEecCCHHHHHHHHHHHHhcCCcE
Confidence 345667889999999998877543 444443323334456655543322233334445778899999999999999989
Q ss_pred EEeCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 229 FYLGDVG---NGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 229 ~~~~~~g---~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+++++.+ ...+.++++|+. ..+..+.|+ ++++.|++++++.+++.+++.+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ea--l~~~~Gl~~~~~~~l~~~~~~~~~~~ 220 (266)
T 3d1l_A 164 YDADSEQRKSLHLAAVFTCNFT-NHMYALAAE--LLKKYNLPFDVMLPLIDETARKVHEL 220 (266)
T ss_dssp EECCHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHTTCCGGGGHHHHHHHHHHHHHS
T ss_pred EEeCHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 9998764 556788888874 233556676 57899999999999999888765543
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-23 Score=178.60 Aligned_cols=192 Identities=13% Similarity=0.154 Sum_probs=147.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-------CCccCCCHHHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------GAKYQPSPDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-------g~~~~~~~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
.++|+|||+|.||..+|..++ .|++|++||+++++.+.+.+. ++..++++++ +++||+||.++|.+.+++.
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~ 89 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKV 89 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHHH
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHH
Confidence 699999999999999999999 999999999999888777665 5666777876 8999999999999999887
Q ss_pred HhcccccccccCCCCCEEE-EecCCChhHHHHHHHHHHH----cCCcEEeCccCCCCccccCCceEEEecC---CHHHHH
Q 022909 144 VACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQLIFLAAG---DKSLYN 215 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li-n~s~~~~~~~~~l~~~l~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~ 215 (290)
.+++ + ++.+ ++++++ |+|+.++.. +.+.+.. .+.||++ |+. ..+++.++.+ ++++++
T Consensus 90 ~l~~--~-l~~~-~~~IlasntSti~~~~---~a~~~~~~~r~~G~Hf~~-Pv~-------~~~lveiv~g~~t~~~~~~ 154 (293)
T 1zej_A 90 EVLR--E-VERL-TNAPLCSNTSVISVDD---IAERLDSPSRFLGVHWMN-PPH-------VMPLVEIVISRFTDSKTVA 154 (293)
T ss_dssp HHHH--H-HHTT-CCSCEEECCSSSCHHH---HHTTSSCGGGEEEEEECS-STT-------TCCEEEEEECTTCCHHHHH
T ss_pred HHHH--H-HhcC-CCCEEEEECCCcCHHH---HHHHhhcccceEeEEecC-ccc-------cCCEEEEECCCCCCHHHHH
Confidence 7743 2 4555 898884 777766653 3332221 2445554 221 2344445444 889999
Q ss_pred HHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccCCC
Q 022909 216 TVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDGNF 289 (290)
Q Consensus 216 ~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~~~ 289 (290)
.+.++++.+|+.++++++. +++++++. ..++|++.++++ |++++++++++...++.++.+.|+|
T Consensus 155 ~~~~l~~~lGk~~v~v~d~------fi~Nrll~---~~~~EA~~l~~~-Gv~~e~id~~~~~g~g~~~~~~GP~ 218 (293)
T 1zej_A 155 FVEGFLRELGKEVVVCKGQ------SLVNRFNA---AVLSEASRMIEE-GVRAEDVDRVWKHHLGLLYTLFGPL 218 (293)
T ss_dssp HHHHHHHHTTCEEEEEESS------CHHHHHHH---HHHHHHHHHHHH-TCCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEeccc------ccHHHHHH---HHHHHHHHHHHh-CCCHHHHHHHHHhcCCCCCCCCCHH
Confidence 9999999999999999865 45555543 457999999999 8899999999998888777666654
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-21 Score=164.22 Aligned_cols=205 Identities=11% Similarity=0.125 Sum_probs=149.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC----eEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~----~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
.+||+|||+|+||..+++.|...|+ +|.+|||++++.+.+.+ .|+....+.+++++++|+|++++| +...+.++
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~-~~~~~~v~ 80 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIK-PDLYASII 80 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSC-TTTHHHHC
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeC-HHHHHHHH
Confidence 4789999999999999999999998 99999999988888765 588888899999999999999995 46777777
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEe--cCCHHHHHHHHHHHH
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLA--AGDKSLYNTVAPLLD 222 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~ll~ 222 (290)
+++.+.+++++++|+++.+-. .+.+.+.+.. +.+++. +|.. +.....+...++. +++++.++.++++|+
T Consensus 81 ---~~l~~~l~~~~~vvs~~~gi~--~~~l~~~~~~-~~~~v~~~p~~--p~~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 152 (247)
T 3gt0_A 81 ---NEIKEIIKNDAIIVTIAAGKS--IESTENAFNK-KVKVVRVMPNT--PALVGEGMSALCPNEMVTEKDLEDVLNIFN 152 (247)
T ss_dssp ------CCSSCTTCEEEECSCCSC--HHHHHHHHCS-CCEEEEEECCG--GGGGTCEEEEEEECTTCCHHHHHHHHHHHG
T ss_pred ---HHHHhhcCCCCEEEEecCCCC--HHHHHHHhCC-CCcEEEEeCCh--HHHHcCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 456777889999986654443 3355555532 344443 3432 2222233344443 367889999999999
Q ss_pred HhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 223 IMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLT-LEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 223 ~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l-~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
.+|. ++.+++........+... ..+++..+.|++.. +++.|++++++.+++.+++.|++.+.
T Consensus 153 ~~G~-~~~~~e~~~d~~~a~~g~-gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~~~ 215 (247)
T 3gt0_A 153 SFGQ-TEIVSEKLMDVVTSVSGS-SPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMV 215 (247)
T ss_dssp GGEE-EEECCGGGHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC-EEEeCHHHccHHHHHhcc-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9998 666665444444333322 22334667788754 89999999999999999999998763
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-22 Score=175.31 Aligned_cols=204 Identities=14% Similarity=0.113 Sum_probs=158.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
.|+|+|||+ |.||..+++.|...|++|.+|||++++.+.+.+.|+... +..++++++|+|++++|.. .++.++ +
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~~-~~~~v~---~ 85 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPDN-IIEKVA---E 85 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCHH-HHHHHH---H
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCch-HHHHHH---H
Confidence 479999999 999999999999999999999999988777777676554 6778889999999999864 477777 4
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE-eCccCCCC------ccccCCc-------eE--EEecCCHHH
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSK------KPAEDGQ-------LI--FLAAGDKSL 213 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~-~~p~~~~~------~~~~~~~-------~~--~~~~~~~~~ 213 (290)
++.+.+++++++|++|++.+. ..+.+ + ..+..++ .+|+++.+ +....+. .. +..+++++.
T Consensus 86 ~l~~~l~~~~ivv~~s~~~~~--~~l~~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~ 161 (286)
T 3c24_A 86 DIVPRVRPGTIVLILDAAAPY--AGVMP-E-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEH 161 (286)
T ss_dssp HHGGGSCTTCEEEESCSHHHH--HTCSC-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHH
T ss_pred HHHHhCCCCCEEEECCCCchh--HHHHh-h-hCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHH
Confidence 566778899999998776533 22332 2 2357788 68998776 3233341 22 234578889
Q ss_pred HHHHHHHHHHhCC---cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHH-HHHHCCCCHHHHHHHHhhcCCCCc
Q 022909 214 YNTVAPLLDIMGK---SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFL-TLEFVDFLINTVTMFLQSFSFGNL 283 (290)
Q Consensus 214 ~~~v~~ll~~~G~---~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~-l~~~~G~~~~~~~~~i~~~~~gs~ 283 (290)
++.++++++.+|. +++++++.+.+.+.+.+.|.....+ ..+.|++. .+++.|++++++.+++.+++.|++
T Consensus 162 ~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~~~~~ 236 (286)
T 3c24_A 162 YAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEI 236 (286)
T ss_dssp HHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 7888987777777688887555454 88888885 556669999999999998887765
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-22 Score=173.90 Aligned_cols=176 Identities=20% Similarity=0.264 Sum_probs=131.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc--------------hhhHHh-CCCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--------------CDPLIS-LGAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~--------------~~~~~~-~g~~~~~~~~~~~~~aDivv~~~ 135 (290)
.++|+|||+|.||.++|+.|...|++|++|||++++ .+.+.+ .+.....+++++++++|+|++++
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVilav 98 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNAT 98 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEEECS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEEEcc
Confidence 799999999999999999999999999999999876 333332 34455668899999999999999
Q ss_pred CChhHHHHHhcccccc-cccCCCCCEEEEecCC-----------ChhHHHHHHHHHHH--------cCCcEEeCccCCCC
Q 022909 136 ADPESAMDVACGKHGA-ASGMGPGKGYVDVSTV-----------DGDTSKLINGHIKA--------TGASFLEAPVSGSK 195 (290)
Q Consensus 136 p~~~~~~~~~~~~~~~-~~~~~~~~~lin~s~~-----------~~~~~~~l~~~l~~--------~~~~~~~~p~~~~~ 195 (290)
|.+.. ..++ .++ .+.+ +++++||++.+ .+.....+.+.+.+ +++.++++|+++++
T Consensus 99 p~~~~-~~~~---~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a~v~~~~ 173 (245)
T 3dtt_A 99 EGASS-IAAL---TAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASLMVDP 173 (245)
T ss_dssp CGGGH-HHHH---HHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCHHHHHCG
T ss_pred CcHHH-HHHH---HHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCHHHhcCc
Confidence 87544 4444 122 2334 89999999832 22222233333333 25677778888877
Q ss_pred ccccCCceEEEe-cCCHHHHHHHHHHHHHhCCc-EEEeCCcchHHHHHHHHHHHHHHH
Q 022909 196 KPAEDGQLIFLA-AGDKSLYNTVAPLLDIMGKS-RFYLGDVGNGAAMKLVVNMIMGRS 251 (290)
Q Consensus 196 ~~~~~~~~~~~~-~~~~~~~~~v~~ll~~~G~~-~~~~~~~g~a~~~k~~~n~~~~~~ 251 (290)
.....+++.+++ ++++++++.++++|+.+|+. ++++++.+.+..+|++.|++..++
T Consensus 174 ~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~l~ 231 (245)
T 3dtt_A 174 GRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLW 231 (245)
T ss_dssp GGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHHHH
T ss_pred cccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHHHH
Confidence 655455554554 55689999999999999975 589999999999999999886665
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.7e-21 Score=177.19 Aligned_cols=204 Identities=19% Similarity=0.158 Sum_probs=161.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC--------------------CccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG--------------------AKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------------~~~~~~~~~~~~~aDi 130 (290)
.|+|+|||+|.||..+|..|+..|++|++||+++++.+.+.+.+ +..++++++.++++|+
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv 87 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV 87 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence 59999999999999999999999999999999998887776531 3445677788899999
Q ss_pred EEEEeCCh---------hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc---C---C--cEEeCccCC
Q 022909 131 TFAMLADP---------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT---G---A--SFLEAPVSG 193 (290)
Q Consensus 131 vv~~~p~~---------~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~---~---~--~~~~~p~~~ 193 (290)
|++|+|.+ ..++.++ +.+.+.+++++++|+.|+.++...+.+.+.+.+. + . .++..|.+.
T Consensus 88 viiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~Pe~~ 164 (478)
T 2y0c_A 88 QFIAVGTPPDEDGSADLQYVLAAA---RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFL 164 (478)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCC
T ss_pred EEEEeCCCcccCCCccHHHHHHHH---HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCCCCCccEEEEEChhhh
Confidence 99999986 5677776 4566778999999999988888888777776553 2 2 233455444
Q ss_pred CCccc----cCCceEEEecCC-H----HHHHHHHHHHHHhCC--cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 022909 194 SKKPA----EDGQLIFLAAGD-K----SLYNTVAPLLDIMGK--SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTL 261 (290)
Q Consensus 194 ~~~~~----~~~~~~~~~~~~-~----~~~~~v~~ll~~~G~--~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~ 261 (290)
.+... .... .++.|++ + +..+.++++++.++. .++++++.+.+++.|++.|.+.+++ ..++|+..+|
T Consensus 165 ~eG~~~~~~~~p~-~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~la 243 (478)
T 2y0c_A 165 KEGAAVDDFTRPD-RIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELANLA 243 (478)
T ss_dssp CTTCHHHHHHSCS-CEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeeccCCCC-EEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 1111 2344443 5 688899999998765 6788899999999999999999888 9999999999
Q ss_pred HHCCCCHHHHHHHHhhc
Q 022909 262 EFVDFLINTVTMFLQSF 278 (290)
Q Consensus 262 ~~~G~~~~~~~~~i~~~ 278 (290)
++.|+|.+++.+.+...
T Consensus 244 ~~~Gid~~~v~~~i~~~ 260 (478)
T 2y0c_A 244 DRFGADIEAVRRGIGSD 260 (478)
T ss_dssp HHTTCCHHHHHHHHHTS
T ss_pred HHhCCCHHHHHHHHhcC
Confidence 99999999999998754
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-21 Score=175.06 Aligned_cols=201 Identities=13% Similarity=0.039 Sum_probs=159.1
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC------------------ccCCCHHHHhhcCCeEEE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA------------------KYQPSPDEVAASCDVTFA 133 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~------------------~~~~~~~~~~~~aDivv~ 133 (290)
|+|+|||+|.||..+|..|+. |++|++||+++++.+.+.+.+. ..+++..+.++++|+|++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii 79 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence 589999999999999999999 9999999999988887766543 344567788899999999
Q ss_pred EeCChh----------HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcccc---C
Q 022909 134 MLADPE----------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE---D 200 (290)
Q Consensus 134 ~~p~~~----------~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~---~ 200 (290)
++|.+. .+..++ +.+.+ +++++++|+.|+.++...+.+.+.+.+. .++.+|.+..+.... .
T Consensus 80 avpt~~~~~~~~~dl~~v~~v~---~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~~ 153 (402)
T 1dlj_A 80 ATPTNYNSRINYFDTQHVETVI---KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL 153 (402)
T ss_dssp CCCCCEETTTTEECCHHHHHHH---HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred ecCCCcccCCCCccHHHHHHHH---HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhccc
Confidence 999864 466666 44566 8899999998899998888888876543 667788776554322 1
Q ss_pred CceEEEecCCH-------HHHHHHHHHHHHhCCc---EEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHH
Q 022909 201 GQLIFLAAGDK-------SLYNTVAPLLDIMGKS---RFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLIN 269 (290)
Q Consensus 201 ~~~~~~~~~~~-------~~~~~v~~ll~~~G~~---~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~ 269 (290)
.+..++.|+++ +..+.+.+++...+.. ++++++.+.+.+.|++.|.+.+.. ..++|+..+|++.|+|.+
T Consensus 154 ~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~ 233 (402)
T 1dlj_A 154 YPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSH 233 (402)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred CCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 22224556554 5567778888754332 577889999999999999998888 999999999999999999
Q ss_pred HHHHHHhhcC
Q 022909 270 TVTMFLQSFS 279 (290)
Q Consensus 270 ~~~~~i~~~~ 279 (290)
++.++++.-.
T Consensus 234 ~v~~~~~~~~ 243 (402)
T 1dlj_A 234 MIIQGISYDD 243 (402)
T ss_dssp HHHHHHHTST
T ss_pred HHHHHhccCC
Confidence 9999997543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-21 Score=168.82 Aligned_cols=181 Identities=15% Similarity=0.221 Sum_probs=145.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHhCCC--ccCCCHHH-HhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGA--KYQPSPDE-VAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~~g~--~~~~~~~~-~~~~aDivv~~~p~~~~~~~~~ 145 (290)
.++|+|||+|.||..+|+.|...|+ +|.+|||++++.+.+.+.|+ ...+++++ +++++|+|++++|.. .+..++
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl 111 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIA 111 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGG-GHHHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHH-HHHHHH
Confidence 4899999999999999999999999 99999999988887777776 34567888 899999999999874 566676
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccc--------cCCceEEEec---CCHHH
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPA--------EDGQLIFLAA---GDKSL 213 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~--------~~~~~~~~~~---~~~~~ 213 (290)
+++.+.++++++++|+++......+.+.+.+.. ++++ +|+++++... ..+..++++. ++++.
T Consensus 112 ---~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~ 185 (314)
T 3ggo_A 112 ---KKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKR 185 (314)
T ss_dssp ---HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHH
T ss_pred ---HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC---CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHH
Confidence 456777999999999999887777777776643 7777 8998865321 1456666764 56789
Q ss_pred HHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 022909 214 YNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF 258 (290)
Q Consensus 214 ~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~ 258 (290)
++.++++++.+|.+++++++..+...+.+++.+-..+..++.++.
T Consensus 186 ~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a~~l~~~~ 230 (314)
T 3ggo_A 186 LKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTL 230 (314)
T ss_dssp HHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998999999888876655544444443
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-21 Score=165.94 Aligned_cols=202 Identities=14% Similarity=0.164 Sum_probs=155.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHhCCCc--cCCCHHHHhh-cCCeEEEEeCChhHHHHHhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAK--YQPSPDEVAA-SCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~-~aDivv~~~p~~~~~~~~~~ 146 (290)
++|+|||+|.||..+++.|...|+ +|++|||++++.+.+.+.|+. ..++++++++ ++|+|++++|. ..+..++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~-~~~~~v~- 79 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA- 79 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCH-HHHHHHH-
Confidence 689999999999999999999998 999999999887777776764 3557888899 99999999986 4666776
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCc----cc----cCCceEEEe---cCCHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKK----PA----EDGQLIFLA---AGDKSLY 214 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~----~~----~~~~~~~~~---~~~~~~~ 214 (290)
+++.+.+++++++++++++.....+.+.+.+.++ +++ +|+++.+. .. ..+..++++ +++++..
T Consensus 80 --~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~---~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~ 154 (281)
T 2g5c_A 80 --KKLSYILSEDATVTDQGSVKGKLVYDLENILGKR---FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRL 154 (281)
T ss_dssp --HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG---EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHH
T ss_pred --HHHHhhCCCCcEEEECCCCcHHHHHHHHHhcccc---ceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHH
Confidence 3456678899999999988877777777777652 665 67776432 11 245556666 5678889
Q ss_pred HHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCc
Q 022909 215 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNL 283 (290)
Q Consensus 215 ~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~ 283 (290)
+.++++++.+|.+++.+++..++.+.+++++....+..++.+++ .+.|++.++...++.+++.+..
T Consensus 155 ~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~ 220 (281)
T 2g5c_A 155 KLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTL---IHMSTPEVDLFKYPGGGFKDFT 220 (281)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHH---HHHCBTTBCGGGCCTTTGGGC-
T ss_pred HHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcccchHHHHhhccccHHHHh
Confidence 99999999999999889988889999999888765555555655 3346666666666666665543
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.9e-23 Score=183.46 Aligned_cols=150 Identities=12% Similarity=0.087 Sum_probs=124.9
Q ss_pred eeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhH
Q 022909 4 LVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMG 83 (290)
Q Consensus 4 ~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG 83 (290)
...|+|... +++|++++++|++.|+ |. +.+. +++|||||+|+||
T Consensus 85 ~n~pg~~~~--~vAE~~l~~lL~l~r~------------~~---------~~l~-------------g~tvGIIGlG~IG 128 (380)
T 2o4c_A 85 SSAPGCNAR--GVVDYVLGCLLAMAEV------------RG---------ADLA-------------ERTYGVVGAGQVG 128 (380)
T ss_dssp ECCTTTTHH--HHHHHHHHHHHHHHHH------------HT---------CCGG-------------GCEEEEECCSHHH
T ss_pred EeCCCcChH--HHHHHHHHHHHHHHhh------------hh---------cccC-------------CCEEEEEeCCHHH
Confidence 334666665 7888899998888776 21 1333 8999999999999
Q ss_pred HHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhH----HHHHhcccccccccCCCCC
Q 022909 84 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES----AMDVACGKHGAASGMGPGK 159 (290)
Q Consensus 84 ~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~----~~~~~~~~~~~~~~~~~~~ 159 (290)
+.+|+++..+|++|++||++++.. +.+.. ..++++++++||+|++|+|.+++ |++++ +++.++.||+|+
T Consensus 129 ~~vA~~l~~~G~~V~~~d~~~~~~----~~g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li--~~~~l~~mk~ga 201 (380)
T 2o4c_A 129 GRLVEVLRGLGWKVLVCDPPRQAR----EPDGE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLL--DEPRLAALRPGT 201 (380)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHH----STTSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSB--CHHHHHTSCTTE
T ss_pred HHHHHHHHHCCCEEEEEcCChhhh----ccCcc-cCCHHHHHHhCCEEEEeccCccccccchhhhc--CHHHHhhCCCCc
Confidence 999999999999999999875422 22333 45899999999999999999998 99999 678899999999
Q ss_pred EEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 160 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 160 ~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
++||+||+.++++++|.++|+++++.....+++..||
T Consensus 202 ilIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP 238 (380)
T 2o4c_A 202 WLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEP 238 (380)
T ss_dssp EEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTT
T ss_pred EEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCC
Confidence 9999999999999999999999888777677777665
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=173.36 Aligned_cols=200 Identities=14% Similarity=0.072 Sum_probs=155.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC--------------CccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG--------------AKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------~~~~~~~~~~~~~aDivv~~~p 136 (290)
.|+|+|||+|.||.++|..|+..|++|.+|+|++++.+.+.+.+ +..+++++++++++|+|++++|
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp 108 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP 108 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence 47999999999999999999999999999999988877776633 2345688889999999999998
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEecCCChhHH----HHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHH
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS----KLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKS 212 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~----~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 212 (290)
. ..++.++ +++.+.+++++++|+++.+-...+ +.+.+.+....+.++..|.+..+.........++.+.+++
T Consensus 109 ~-~~~~~vl---~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~~ 184 (356)
T 3k96_A 109 S-FAFHEVI---TRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQ 184 (356)
T ss_dssp H-HHHHHHH---HHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCHH
T ss_pred H-HHHHHHH---HHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCHH
Confidence 6 5778877 556778899999999876554332 3344444434456777888776655555555666777889
Q ss_pred HHHHHHHHHHHhCCcEEEeCCcchHHH-----------------HHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHH
Q 022909 213 LYNTVAPLLDIMGKSRFYLGDVGNGAA-----------------MKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMF 274 (290)
Q Consensus 213 ~~~~v~~ll~~~G~~~~~~~~~g~a~~-----------------~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~ 274 (290)
..+.++++|+..+++++...|.-...+ +++..|...+++ .+++|+.+++++.|.+++++..+
T Consensus 185 ~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~~gl 264 (356)
T 3k96_A 185 FSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTGL 264 (356)
T ss_dssp HHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTST
T ss_pred HHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHhhccc
Confidence 999999999999999988877433333 345567777778 99999999999999999988743
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-20 Score=163.46 Aligned_cols=188 Identities=11% Similarity=0.125 Sum_probs=145.3
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
.++|+||| +|.||..+++.|...|++|.+|||+++. +.+++++++|+|++++|. ..+..++ +
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~aDvVilavp~-~~~~~vl---~ 83 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVPI-NLTLETI---E 83 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECSCG-GGHHHHH---H
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-------------CHHHHhcCCCEEEEeCCH-HHHHHHH---H
Confidence 47899999 9999999999999999999999988642 466788999999999987 4578887 4
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEec-CCHHHHHHHHHHHHHhCCc
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKS 227 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~ll~~~G~~ 227 (290)
++.+.++++++|+++++......+.+.+.+ +.+++. +|+++++.....+..++++. .+++..+.++++++.+|.+
T Consensus 84 ~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~~ 160 (298)
T 2pv7_A 84 RLKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAK 160 (298)
T ss_dssp HHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCE
T ss_pred HHHhhcCCCcEEEECCCCCcHHHHHHHHhc---CCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHHHHHcCCE
Confidence 566778999999999888776655555443 356776 79888765444555555553 3677889999999999998
Q ss_pred EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCC
Q 022909 228 RFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFG 281 (290)
Q Consensus 228 ~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~g 281 (290)
++.+++..+..+.+++++..+.+...+.+++ .+.|++.+.+.++..+++.+
T Consensus 161 ~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l---~~~g~~~~~~~~la~~~f~~ 211 (298)
T 2pv7_A 161 IYQTNATEHDHNMTYIQALRHFSTFANGLHL---SKQPINLANLLALSSPIYRL 211 (298)
T ss_dssp EEECCHHHHHHHHHHHTHHHHHHHHHHHHHH---TTSSCCHHHHHHTCCHHHHH
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHhhcCHHHHH
Confidence 8888887888888888887665545556654 35788887777766665544
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-20 Score=157.63 Aligned_cols=200 Identities=11% Similarity=0.119 Sum_probs=147.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+|+|+|||+|.||+.+++.|...|++|.+|||++++.+.+.+ .|+....+++++++++|+|++++| +.....++
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~---- 77 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVL---- 77 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHH----
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHH----
Confidence 479999999999999999999999999999999988777765 478777889999999999999998 66777766
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecC--CHHHHHHHHHHHHHhCCc
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKS 227 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~ll~~~G~~ 227 (290)
..+++++++|+.+.+... +.+.+.+. .+.+++. ++.+.+.....+...++.++ +++.++.++++++.+| .
T Consensus 78 ---~~l~~~~~vv~~~~~~~~--~~l~~~~~-~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G-~ 149 (259)
T 2ahr_A 78 ---KPLHFKQPIISMAAGISL--QRLATFVG-QDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFG-S 149 (259)
T ss_dssp ---TTSCCCSCEEECCTTCCH--HHHHHHHC-TTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTE-E
T ss_pred ---HHhccCCEEEEeCCCCCH--HHHHHhcC-CCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCC-C
Confidence 224478899998654433 24555554 3455665 33343444444555555555 7888999999999999 5
Q ss_pred EEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCcc
Q 022909 228 RFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQ 284 (290)
Q Consensus 228 ~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~ 284 (290)
++++++.....+.++..+.- ++...+.+++ ..+++.|++++++.+++.+++.|++.
T Consensus 150 ~~~~~~~~~d~~~al~g~~~-~~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~~~~~ 206 (259)
T 2ahr_A 150 TFDISEKDFDTFTALAGSSP-AYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASAS 206 (259)
T ss_dssp EEECCGGGHHHHHHHHTTHH-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecHHHccHHHHHhccHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 78888777777766543211 1122223333 34789999999999999999988873
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-20 Score=160.94 Aligned_cols=196 Identities=12% Similarity=0.049 Sum_probs=143.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----------C--------------CccCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----------G--------------AKYQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----------g--------------~~~~~~~~~~~ 125 (290)
.++|+|||+|.||..+|+.++..|++|++||+++++.+.+.+. + +...+++++++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~ 83 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV 83 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence 4799999999999999999999999999999998876655432 1 35567888999
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEE
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 205 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~ 205 (290)
+++|+||+++|.+.+.+..+. +++.+.+++++++++.+++.. ..++.+.+.+. .+++....+.+. ...+++.
T Consensus 84 ~~aDlVi~av~~~~~~~~~v~--~~l~~~~~~~~il~s~tS~~~--~~~la~~~~~~-~~~ig~h~~~p~---~~~~lve 155 (283)
T 4e12_A 84 KDADLVIEAVPESLDLKRDIY--TKLGELAPAKTIFATNSSTLL--PSDLVGYTGRG-DKFLALHFANHV---WVNNTAE 155 (283)
T ss_dssp TTCSEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSC--HHHHHHHHSCG-GGEEEEEECSST---TTSCEEE
T ss_pred ccCCEEEEeccCcHHHHHHHH--HHHHhhCCCCcEEEECCCCCC--HHHHHhhcCCC-cceEEEccCCCc---ccCceEE
Confidence 999999999998766655552 456677899999996554443 34566665432 345552222221 2334444
Q ss_pred EecC---CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCC
Q 022909 206 LAAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSF 280 (290)
Q Consensus 206 ~~~~---~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~ 280 (290)
++.+ +++.++.+.++++.+|+.+++++....+.. +++++. ..+.|++.++++.+++++++++++...++
T Consensus 156 vv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i---~nr~~~---~~~~ea~~l~~~g~~~~~~id~~~~~~~g 227 (283)
T 4e12_A 156 VMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYV---LNSLLV---PLLDAAAELLVDGIADPETIDKTWRIGTG 227 (283)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTTT---HHHHHH---HHHHHHHHHHHTTSCCHHHHHHHHHHHHC
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCEE---ehHHHH---HHHHHHHHHHHhCCCCHHHHHHHHHhccC
Confidence 5544 678999999999999999999855444432 233332 45689999999999999999999987554
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=163.11 Aligned_cols=204 Identities=15% Similarity=0.146 Sum_probs=146.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC---eEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~---~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.++|+|||+|+||.++++.|...|+ +|.+|||++++.+.+.+ .|+..+.+..++++++|+|++++| ++..+.++
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~-p~~~~~vl- 80 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVK-PHQIKMVC- 80 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSC-GGGHHHHH-
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeC-HHHHHHHH-
Confidence 5899999999999999999999998 99999999998888877 488888899999999999999996 47778877
Q ss_pred cccccccc-CCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEec--CCHHHHHHHHHHHH
Q 022909 147 GKHGAASG-MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLD 222 (290)
Q Consensus 147 ~~~~~~~~-~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~ 222 (290)
+++.+. +++++++|+++.+-. .+.+.+.+.. +.+++. +|+. +.....+...+..+ .+++.++.++++|+
T Consensus 81 --~~l~~~~l~~~~iiiS~~agi~--~~~l~~~l~~-~~~vvr~mPn~--p~~v~~g~~~l~~~~~~~~~~~~~v~~l~~ 153 (280)
T 3tri_A 81 --EELKDILSETKILVISLAVGVT--TPLIEKWLGK-ASRIVRAMPNT--PSSVRAGATGLFANETVDKDQKNLAESIMR 153 (280)
T ss_dssp --HHHHHHHHTTTCEEEECCTTCC--HHHHHHHHTC-CSSEEEEECCG--GGGGTCEEEEEECCTTSCHHHHHHHHHHHG
T ss_pred --HHHHhhccCCCeEEEEecCCCC--HHHHHHHcCC-CCeEEEEecCC--hHHhcCccEEEEeCCCCCHHHHHHHHHHHH
Confidence 445555 778888887765544 3466666643 344554 5643 22223333333323 35788999999999
Q ss_pred HhCCcEEEeCC-cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 223 IMGKSRFYLGD-VGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 223 ~~G~~~~~~~~-~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
.+|+.+ ++.+ ........+... ..++++.+.|++ ..+.+.|++++++.+++.+++.|+..+
T Consensus 154 ~iG~~~-~v~~E~~~d~~talsgs-gpa~~~~~~eal~~a~v~~Gl~~~~a~~l~~~t~~G~a~~ 216 (280)
T 3tri_A 154 AVGLVI-WVSSEDQIEKIAALSGS-GPAYIFLIMEALQEAAEQLGLTKETAELLTEQTVLGAARM 216 (280)
T ss_dssp GGEEEE-ECSSHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCeE-EECCHHHhhHHHHHhcc-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999844 4543 323333222211 112234455665 457899999999999999999998765
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=160.99 Aligned_cols=204 Identities=14% Similarity=0.104 Sum_probs=146.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC----CeEEEEeCCcc--chhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS--KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g----~~V~~~d~~~~--~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
.|+|+|||+|+||..++..|...| ++|.+|+|+++ +.+.+.+.|+....+..++++++|+|++++| +..++.+
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~v 100 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPFI 100 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHHH
Confidence 578999999999999999999999 89999999986 6677777788887889999999999999998 6788888
Q ss_pred hcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc--CCcEEe-CccCCCCccccCCceEEEecCC---HHHHHHHH
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLE-APVSGSKKPAEDGQLIFLAAGD---KSLYNTVA 218 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~--~~~~~~-~p~~~~~~~~~~~~~~~~~~~~---~~~~~~v~ 218 (290)
+ +++.+.+++++++|+++.+... +.+.+.+.+. ..+++. +|..+.. ...+. .++++++ ++.++.++
T Consensus 101 l---~~l~~~l~~~~ivvs~s~gi~~--~~l~~~l~~~~~~~~vv~~~p~~p~~--~~~g~-~v~~~g~~~~~~~~~~v~ 172 (322)
T 2izz_A 101 L---DEIGADIEDRHIVVSCAAGVTI--SSIEKKLSAFRPAPRVIRCMTNTPVV--VREGA-TVYATGTHAQVEDGRLME 172 (322)
T ss_dssp H---HHHGGGCCTTCEEEECCTTCCH--HHHHHHHHTTSSCCEEEEEECCGGGG--GTCEE-EEEEECTTCCHHHHHHHH
T ss_pred H---HHHHhhcCCCCEEEEeCCCCCH--HHHHHHHhhcCCCCeEEEEeCCcHHH--HcCCe-EEEEeCCCCCHHHHHHHH
Confidence 7 3456678889999999765543 3466666542 345544 4433222 22333 4454554 78889999
Q ss_pred HHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 219 PLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 219 ~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
++|+.+|..++ +.+........+.... .+++..+.|++ ..+++.|++++++.+++.+++.|++.+
T Consensus 173 ~ll~~~G~~~~-~~e~~~~~~~a~~g~g-pa~~~~~~eala~a~~~~Gl~~~~a~~l~~~~~~g~~~~ 238 (322)
T 2izz_A 173 QLLSSVGFCTE-VEEDLIDAVTGLSGSG-PAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKM 238 (322)
T ss_dssp HHHHTTEEEEE-CCGGGHHHHHHHTTTH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCEEE-eCHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999998654 4443333333332111 11123345555 346899999999999999999888754
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=156.23 Aligned_cols=198 Identities=14% Similarity=0.164 Sum_probs=148.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc--cCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--YQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
|+|+|||+|.||..+++.|...|++|.+|||++++.+.+.+.|+. ...+++++ +++|+|++++|. ..+..++ +
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~---~ 75 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTL---E 75 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHH---H
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHH---H
Confidence 579999999999999999999999999999999888777776663 45678888 999999999985 5677777 4
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc----c----cCCceEEEec---CCHHHHHHH
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP----A----EDGQLIFLAA---GDKSLYNTV 217 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~----~----~~~~~~~~~~---~~~~~~~~v 217 (290)
++.+.++++++++++++......+.+.+.+. ++++ +|+.+.+.. . ..+..++++. ++++..+.+
T Consensus 76 ~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~----~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v 151 (279)
T 2f1k_A 76 KLIPHLSPTAIVTDVASVKTAIAEPASQLWS----GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACL 151 (279)
T ss_dssp HHGGGSCTTCEEEECCSCCHHHHHHHHHHST----TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHH
T ss_pred HHHhhCCCCCEEEECCCCcHHHHHHHHHHhC----CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHH
Confidence 5667788999999998877766555554432 5555 577653321 1 2343444442 467889999
Q ss_pred HHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHhhcCCC
Q 022909 218 APLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFL--INTVTMFLQSFSFG 281 (290)
Q Consensus 218 ~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~--~~~~~~~i~~~~~g 281 (290)
+++|+.+|.+++++++...+.+.+++.|.......++.++ +...|++ .+....++.+++.+
T Consensus 152 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~al~~~---~~~~~~~~~~~~~~~l~~~~~~~ 214 (279)
T 2f1k_A 152 RSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSAALIQA---CAGEKDGDILKLAQNLASSGFRD 214 (279)
T ss_dssp HHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHH---HHTCSCHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHH---HHhcccccchhHHHhhcCCcccc
Confidence 9999999999999998888999999888755544455554 3566766 56777777666554
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=156.88 Aligned_cols=196 Identities=14% Similarity=0.128 Sum_probs=140.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
|+|+|||+|.||..++..|...| ++|.+|||++++.+.+.+ .|+....+.++++ ++|+|++++| +..++.++ +
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~---~ 75 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC---K 75 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH---T
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH---H
Confidence 57999999999999999999999 999999999988887766 4887777788888 9999999999 78888887 2
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecC--CHHHHHHHHHHHHHhCCc
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKS 227 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~ll~~~G~~ 227 (290)
++.+ + ++++|+++++-.. +.+.+.+.+ +.+++.. +.+.+.....+...++.++ +++.++.++++++.+|..
T Consensus 76 ~l~~--~-~~ivv~~~~g~~~--~~l~~~~~~-~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~ 148 (263)
T 1yqg_A 76 NIRT--N-GALVLSVAAGLSV--GTLSRYLGG-TRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLT 148 (263)
T ss_dssp TCCC--T-TCEEEECCTTCCH--HHHHHHTTS-CCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEE
T ss_pred Hhcc--C-CCEEEEecCCCCH--HHHHHHcCC-CCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3333 5 8899998544332 456565543 4566665 4333444444555566666 778899999999999987
Q ss_pred EEEeC-CcchHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCc
Q 022909 228 RFYLG-DVGNGAAMKLVV---NMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNL 283 (290)
Q Consensus 228 ~~~~~-~~g~a~~~k~~~---n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~ 283 (290)
+ +++ +........+.. .++...+..+.|+ +++.|++++++.+++.+++.|++
T Consensus 149 ~-~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~---~~~~G~~~~~~~~~~~~~~~~~~ 204 (263)
T 1yqg_A 149 V-WLDDEEKMHGITGISGSGPAYVFYLLDALQNA---AIRQGFDMAEARALSLATFKGAV 204 (263)
T ss_dssp E-ECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHH
T ss_pred E-EeCChhhccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHH
Confidence 6 676 432222222211 1111111333444 78999999999999998888876
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-20 Score=161.40 Aligned_cols=204 Identities=12% Similarity=0.096 Sum_probs=139.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHhCCC--ccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGA--KYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~~g~--~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.++|+|||+|.||..+++.|... |++|.+|||++++.+.+.+.|. ....+++++++++|+|++++|.+ ....++
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~- 83 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIK-KTIDFI- 83 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHH-HHHHHH-
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHH-HHHHHH-
Confidence 47999999999999999999987 6899999999888777777666 34567888889999999999864 457777
Q ss_pred cccccccc-CCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCC----ccc----cCCceEEEe---cCCHHH
Q 022909 147 GKHGAASG-MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSK----KPA----EDGQLIFLA---AGDKSL 213 (290)
Q Consensus 147 ~~~~~~~~-~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~----~~~----~~~~~~~~~---~~~~~~ 213 (290)
+++.+. ++++.+++++++......+.+.+.+.+.+.++++ +|+++.+ ... ..+..++++ +++++.
T Consensus 84 --~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~~ 161 (290)
T 3b1f_A 84 --KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPNT 161 (290)
T ss_dssp --HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTTH
T ss_pred --HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHHH
Confidence 345677 8899999999888877777777777654677877 7886532 211 134444443 356788
Q ss_pred HHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCC
Q 022909 214 YNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFG 281 (290)
Q Consensus 214 ~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~g 281 (290)
.+.++++++.+|.+++.+++..+......++..-..+...+.+++ ...|++.+....+..+++.+
T Consensus 162 ~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~s~~~~~~a~~~~~~~---~~~g~~~~~~~~la~~~~~~ 226 (290)
T 3b1f_A 162 IPALQDLLSGLHARYVEIDAAEHDCVTSQISHFPHIIASSLMKQA---GDFSESHEMTKHFAAGGFRD 226 (290)
T ss_dssp HHHHHHHTGGGCCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHH---HHHHHHCTHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHH---HhcccchhhHHhhccccHHh
Confidence 999999999999988888765554443333332222223333333 22343334444554444433
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-19 Score=158.32 Aligned_cols=179 Identities=14% Similarity=0.211 Sum_probs=141.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhc----CCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS----CDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~----aDivv~~~p~~~~~~~~~~ 146 (290)
.++|+|||+|.||.++|+.|...|++|++|||++++.+.+.+.|+....++++++++ +|+|++++|. ..+..++
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl- 85 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL- 85 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH-
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH-
Confidence 578999999999999999999999999999999988888878888777888888765 6999999995 6777777
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccc--------cCCceEEEecC---CHH--
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPA--------EDGQLIFLAAG---DKS-- 212 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~--------~~~~~~~~~~~---~~~-- 212 (290)
+++.+ ++++++++|+++.+....+.+.+.+. +.+|++ +|+++++... ..+..++++.+ +++
T Consensus 86 --~~l~~-~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~ 160 (341)
T 3ktd_A 86 --DAVHT-HAPNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDI 160 (341)
T ss_dssp --HHHHH-HCTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCC
T ss_pred --HHHHc-cCCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhh
Confidence 33444 48999999999988876666655543 467888 8999876221 23445666654 446
Q ss_pred ------HHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHH
Q 022909 213 ------LYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSY 256 (290)
Q Consensus 213 ------~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~e 256 (290)
.++.+.++++.+|.+++++++..+...+.+++.+-+.+..++..
T Consensus 161 ~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~aL~~ 210 (341)
T 3ktd_A 161 NSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAETLAI 210 (341)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88999999999999999999988999988888766544433333
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-19 Score=155.76 Aligned_cols=202 Identities=17% Similarity=0.164 Sum_probs=145.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC------------CCHHHHhh---cCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ------------PSPDEVAA---SCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~------------~~~~~~~~---~aDivv~~~ 135 (290)
+|+|+|||+|.||..+|..|...|++|++|+|++++.+.+.+.|+... .+.+++.+ ++|+|++++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v 82 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALT 82 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECS
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEe
Confidence 479999999999999999999999999999999888777766553221 13344444 899999999
Q ss_pred CChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc----CCcEEeCccCCCC--ccccCCceEEEe--
Q 022909 136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSK--KPAEDGQLIFLA-- 207 (290)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~----~~~~~~~p~~~~~--~~~~~~~~~~~~-- 207 (290)
|. ..+..++ +++.+.+++++++|+++.+.. ..+.+.+.+.+. +..+.+++..++. .....+.+.+..
T Consensus 83 ~~-~~~~~v~---~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~ 157 (316)
T 2ew2_A 83 KA-QQLDAMF---KAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENID 157 (316)
T ss_dssp CH-HHHHHHH---HHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESS
T ss_pred cc-ccHHHHH---HHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecC
Confidence 85 5677777 456677889999999976543 334555555443 1111222233321 112345554442
Q ss_pred cCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHH---------------------HHHH-HHHHHHHHHHHHCC
Q 022909 208 AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMI---------------------MGRS-CTFSYSFLTLEFVD 265 (290)
Q Consensus 208 ~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~---------------------~~~~-~~~~ea~~l~~~~G 265 (290)
+++++..+.+.++|+..|..+++.++...+.+.|++.|.. ...+ .++.|+..++++.|
T Consensus 158 ~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~~~G 237 (316)
T 2ew2_A 158 PSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEA 237 (316)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHHHcC
Confidence 4467888999999999999998889999999999998853 2445 88999999999999
Q ss_pred CCH--HHHHHHHhh
Q 022909 266 FLI--NTVTMFLQS 277 (290)
Q Consensus 266 ~~~--~~~~~~i~~ 277 (290)
++. +.+.+.+..
T Consensus 238 ~~~~~~~~~~~~~~ 251 (316)
T 2ew2_A 238 IYLDQAEVYTHIVQ 251 (316)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHH
Confidence 986 567677765
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-18 Score=150.28 Aligned_cols=193 Identities=11% Similarity=0.070 Sum_probs=134.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHH-----------hCC------------------CccCCCH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SLG------------------AKYQPSP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~-----------~~g------------------~~~~~~~ 121 (290)
.++|+|||+|.||..+|..|+..|++|++||+++++.+... +.| +...+++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 94 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence 36899999999999999999999999999999987765431 122 3345688
Q ss_pred HHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccC
Q 022909 122 DEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAED 200 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~ 200 (290)
++.++++|+||+++|.+.+.+..+. +++.+.++++++++..+++... .++.+.+.. .-+++. +|+. +.. .
T Consensus 95 ~~~~~~aD~Vi~avp~~~~~~~~v~--~~l~~~~~~~~iv~s~ts~i~~--~~l~~~~~~-~~~~~g~h~~~-P~~---~ 165 (302)
T 1f0y_A 95 ASVVHSTDLVVEAIVENLKVKNELF--KRLDKFAAEHTIFASNTSSLQI--TSIANATTR-QDRFAGLHFFN-PVP---V 165 (302)
T ss_dssp HHHTTSCSEEEECCCSCHHHHHHHH--HHHTTTSCTTCEEEECCSSSCH--HHHHTTSSC-GGGEEEEEECS-STT---T
T ss_pred HHhhcCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEECCCCCCH--HHHHHhcCC-cccEEEEecCC-Ccc---c
Confidence 8889999999999998766544331 3456678889988755444332 244443321 123444 3322 111 2
Q ss_pred CceEEEecC---CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhh
Q 022909 201 GQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQS 277 (290)
Q Consensus 201 ~~~~~~~~~---~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~ 277 (290)
..+..++.+ +++.++.+.++++.+|+.++++++. .+ +++++++. ..++|++.++++.|++++++++++..
T Consensus 166 ~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~-~g---~i~nr~l~---~~~~Ea~~l~~~g~~~~~~id~~~~~ 238 (302)
T 1f0y_A 166 MKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDT-PG---FIVNRLLV---PYLMEAIRLYERGDASKEDIDTAMKL 238 (302)
T ss_dssp CCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSC-TT---TTHHHHHH---HHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCc-cc---ccHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 233445554 7899999999999999988888763 22 23344333 45699999999999999999999975
Q ss_pred cC
Q 022909 278 FS 279 (290)
Q Consensus 278 ~~ 279 (290)
..
T Consensus 239 g~ 240 (302)
T 1f0y_A 239 GA 240 (302)
T ss_dssp HH
T ss_pred CC
Confidence 43
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=152.69 Aligned_cols=191 Identities=12% Similarity=0.121 Sum_probs=135.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchh--------hHHhCC-------------CccCCCHHHHhhcCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD--------PLISLG-------------AKYQPSPDEVAASCD 129 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~--------~~~~~g-------------~~~~~~~~~~~~~aD 129 (290)
.++|+|||+|.||..+|..++..|++|++||+++++.. .+.+.| +..+++++ .+++||
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aD 132 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCD 132 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCC
Confidence 47899999999999999999999999999999987321 122223 23456775 689999
Q ss_pred eEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecC
Q 022909 130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG 209 (290)
Q Consensus 130 ivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 209 (290)
+||+++|.+.+.+..++ +++.+.++++++|++.+++.++ .++.+.+.+. .+++....+.+.. ..+++.++.+
T Consensus 133 lVIeAVpe~~~vk~~v~--~~l~~~~~~~aIlasnTSsl~i--~~ia~~~~~p-~r~iG~HffnPv~---~m~LvEIv~g 204 (460)
T 3k6j_A 133 LIVESVIEDMKLKKELF--ANLENICKSTCIFGTNTSSLDL--NEISSVLRDP-SNLVGIHFFNPAN---VIRLVEIIYG 204 (460)
T ss_dssp EEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCH--HHHHTTSSSG-GGEEEEECCSSTT---TCCEEEEECC
T ss_pred EEEEcCCCCHHHHHHHH--HHHHhhCCCCCEEEecCCChhH--HHHHHhccCC-cceEEEEecchhh---hCCEEEEEeC
Confidence 99999998877765552 4567788999999654443332 3454444322 2354422222222 2334445444
Q ss_pred ---CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhh
Q 022909 210 ---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQS 277 (290)
Q Consensus 210 ---~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~ 277 (290)
++++++.+.++++.+|+.++++++ ..+. ++++++. ..++|++.++++.|++++++++++..
T Consensus 205 ~~Ts~e~~~~~~~l~~~lGk~~v~v~d-~pGf---i~Nril~---~~~~EA~~l~~~~Ga~~e~ID~a~~~ 268 (460)
T 3k6j_A 205 SHTSSQAIATAFQACESIKKLPVLVGN-CKSF---VFNRLLH---VYFDQSQKLMYEYGYLPHQIDKIITN 268 (460)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEESS-CCHH---HHHHHHH---HHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCEEEEEec-ccHH---HHHHHHH---HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 789999999999999999999987 3332 2333333 44699999999999999999999973
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-18 Score=154.53 Aligned_cols=206 Identities=17% Similarity=0.143 Sum_probs=154.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------------------CCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDi 130 (290)
+.+|+|||+|.+|..+|..|+..|++|+++|.++++.+.+.+. .+.++++.++.++++|+
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~ 100 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDA 100 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSE
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCc
Confidence 5789999999999999999999999999999999887665431 23456788899999999
Q ss_pred EEEEeCChhH------HHHHhcccccccccCC---CCCEEEEecCCChhHHHHHHHHH-HHc--C--CcEEeCccCCCCc
Q 022909 131 TFAMLADPES------AMDVACGKHGAASGMG---PGKGYVDVSTVDGDTSKLINGHI-KAT--G--ASFLEAPVSGSKK 196 (290)
Q Consensus 131 vv~~~p~~~~------~~~~~~~~~~~~~~~~---~~~~lin~s~~~~~~~~~l~~~l-~~~--~--~~~~~~p~~~~~~ 196 (290)
+++|+|+|.. +..+....+.+.+.++ ++.++|.-|+..+..++++...+ .+. + ..+..+|.+-.+.
T Consensus 101 ~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~PErl~eG 180 (444)
T 3vtf_A 101 TFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEFLREG 180 (444)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECCCCCCTT
T ss_pred eEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCcccccCC
Confidence 9999987531 1122211133344454 57899999999999988765543 332 2 3445577765544
Q ss_pred cc----cCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHH
Q 022909 197 PA----EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTV 271 (290)
Q Consensus 197 ~~----~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~ 271 (290)
.+ ....-+++.+.++.+.+.+.++++.+....+ +.+...|++.|++.|.+.++. +.++|...+|++.|+|.+++
T Consensus 181 ~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~-~~~~~~AE~~Kl~eN~~ravnIa~~NEla~ice~~GiDv~eV 259 (444)
T 3vtf_A 181 SALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKL-VMKPREAELVKYASNVFLALKISFANEVGLLAKRLGVDTYRV 259 (444)
T ss_dssp SHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEE-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ccccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEE-EechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 32 1122233344567788889999988876554 556789999999999999999 99999999999999999999
Q ss_pred HHHHhh
Q 022909 272 TMFLQS 277 (290)
Q Consensus 272 ~~~i~~ 277 (290)
.+++..
T Consensus 260 ~~a~~~ 265 (444)
T 3vtf_A 260 FEAVGL 265 (444)
T ss_dssp HHHHHT
T ss_pred HHHhcc
Confidence 999986
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-18 Score=146.69 Aligned_cols=192 Identities=14% Similarity=0.172 Sum_probs=132.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC----CeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g----~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.|+|+|||+|.||..+++.|...| ++|.+|||++++ .|+....+.+++++++|+|++++| +..++.++
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~- 75 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVL- 75 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHH-
Confidence 478999999999999999999988 799999999875 467777788899999999999998 46777877
Q ss_pred ccccccccCCCCCEEE-EecCCChhHHHHHHHHHHHc--CCcEEe-CccCCCCccccCCceEEEecC---CHHHHHHHHH
Q 022909 147 GKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKAT--GASFLE-APVSGSKKPAEDGQLIFLAAG---DKSLYNTVAP 219 (290)
Q Consensus 147 ~~~~~~~~~~~~~~li-n~s~~~~~~~~~l~~~l~~~--~~~~~~-~p~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~ 219 (290)
+++.+.++ +.++| ++++..+. .+.+.+.+. .++++. +|... ..+ .++++++ +++.++.+++
T Consensus 76 --~~l~~~l~-~~~vv~~~~gi~~~---~l~~~~~~~~~~v~~~p~~p~~~-----~~g-~~~~~~~~~~~~~~~~~~~~ 143 (262)
T 2rcy_A 76 --NNIKPYLS-SKLLISICGGLNIG---KLEEMVGSENKIVWVMPNTPCLV-----GEG-SFIYCSNKNVNSTDKKYVND 143 (262)
T ss_dssp --HHSGGGCT-TCEEEECCSSCCHH---HHHHHHCTTSEEEEEECCGGGGG-----TCE-EEEEEECTTCCHHHHHHHHH
T ss_pred --HHHHHhcC-CCEEEEECCCCCHH---HHHHHhCCCCcEEEECCChHHHH-----cCC-eEEEEeCCCCCHHHHHHHHH
Confidence 34556664 55454 44444442 455555432 123332 33332 234 4445444 6788999999
Q ss_pred HHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCcc
Q 022909 220 LLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQ 284 (290)
Q Consensus 220 ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~ 284 (290)
+|+.+|. ++++++........+.... ..++..+.|++ ..+++.|++++.+.+++.+++.+++.
T Consensus 144 ll~~~G~-~~~~~~~~~~~~~a~~~~~-~~~~~~~~~al~~~~~~~Gl~~~~~~~~~~~~~~~~~~ 207 (262)
T 2rcy_A 144 IFNSCGI-IHEIKEKDMDIATAISGCG-PAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVE 207 (262)
T ss_dssp HHHTSEE-EEECCGGGHHHHHHHTTSH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCC-EEEeCHHHccHHHHHHccH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 9999997 8888876555555543211 11113333443 33689999999999999888776653
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=158.03 Aligned_cols=193 Identities=15% Similarity=0.101 Sum_probs=140.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------CC-------------CccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 126 (290)
.++|+|||+|.||..+|..++..|++|++||+++++.+.+.+ .| +...++++ .++
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 83 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA 83 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence 478999999999999999999999999999999987766432 22 23456665 589
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE-EecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEE
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 205 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li-n~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~ 205 (290)
+||+||+++|.+.+.+..++ +++.+.++++++++ |+|+.++. .+.+.+.+ ..+++....+.+.+ ..+++.
T Consensus 84 ~aDlVIeAVpe~~~vk~~v~--~~l~~~~~~~~IlasntSti~i~---~ia~~~~~-p~~~ig~hf~~Pa~---v~~Lve 154 (483)
T 3mog_A 84 AADLVIEAASERLEVKKALF--AQLAEVCPPQTLLTTNTSSISIT---AIAAEIKN-PERVAGLHFFNPAP---VMKLVE 154 (483)
T ss_dssp GCSEEEECCCCCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH---HHTTTSSS-GGGEEEEEECSSTT---TCCEEE
T ss_pred CCCEEEEcCCCcHHHHHHHH--HHHHHhhccCcEEEecCCCCCHH---HHHHHccC-ccceEEeeecChhh---hCCeEE
Confidence 99999999999877654442 44667789999984 66665553 44444432 12344422222111 124566
Q ss_pred EecC---CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCC
Q 022909 206 LAAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSF 280 (290)
Q Consensus 206 ~~~~---~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~ 280 (290)
++++ +++.++.+.++++.+|+.++++++.. + +++++++.. .++|++.++++.+.+++++++++...++
T Consensus 155 vv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~-G---fi~Nr~l~~---~~~Ea~~l~~~g~~~~~~id~a~~~~~G 225 (483)
T 3mog_A 155 VVSGLATAAEVVEQLCELTLSWGKQPVRCHSTP-G---FIVNRVARP---YYSEAWRALEEQVAAPEVIDAALRDGAG 225 (483)
T ss_dssp EEECSSCCHHHHHHHHHHHHHTTCEEEEEESCT-T---TTHHHHTHH---HHHHHHHHHHTTCSCHHHHHHHHHHTTC
T ss_pred EecCCCCCHHHHHHHHHHHHHhCCEEEEEeccC-c---chHHHHHHH---HHHHHHHHHHhCCCCHHHHHHHHHhcCC
Confidence 6666 78999999999999999999998743 2 445555444 4699999999999999999999986544
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-18 Score=151.52 Aligned_cols=192 Identities=16% Similarity=0.079 Sum_probs=134.5
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC-----------CccCCCHHHHhhcCCeEEEEeCCh
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG-----------AKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g-----------~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
|.+||+|||+|+||..++..|...|++|.+|+|++++.+.+.+.| +..+++.++ ++++|+|++++| +
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk-~ 90 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIP-V 90 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSC-G
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECC-H
Confidence 479999999999999999999999999999999988888777654 355667888 889999999998 4
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCC-ChhHHHHHHHHHHHc-C--CcEEeCccCCCCccccCCce-EEEecCCHHH
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKAT-G--ASFLEAPVSGSKKPAEDGQL-IFLAAGDKSL 213 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~-~~~~~~~l~~~l~~~-~--~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~ 213 (290)
..++.++ +++.+ +++++|+++.+ .+...+.+.+.+.+. + ..+...|.+..+.. .+.+ .+..++.+
T Consensus 91 ~~~~~v~---~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~--~g~~~~~~~g~~~-- 160 (335)
T 1z82_A 91 QYIREHL---LRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVA--KKLPTAVTLAGEN-- 160 (335)
T ss_dssp GGHHHHH---TTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHH--TTCCEEEEEEETT--
T ss_pred HHHHHHH---HHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHh--CCCceEEEEEehh--
Confidence 8888887 22333 78899999855 433333444444432 1 22344554432211 2322 22333333
Q ss_pred HHHHHHHHHHhCCcEEEeCCcchHHHHHHH-----------------HHHHHHHH-HHHHHHHHHHHHCCCCHHHHHH
Q 022909 214 YNTVAPLLDIMGKSRFYLGDVGNGAAMKLV-----------------VNMIMGRS-CTFSYSFLTLEFVDFLINTVTM 273 (290)
Q Consensus 214 ~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~-----------------~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~ 273 (290)
.+.++++|+..|.+++..++.-...+.|++ .|...+++ .++.|+..++++.|++++++.+
T Consensus 161 ~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~ 238 (335)
T 1z82_A 161 SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMG 238 (335)
T ss_dssp HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhcc
Confidence 788999999999988877775433343322 34444556 8999999999999999988754
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=157.28 Aligned_cols=196 Identities=11% Similarity=0.025 Sum_probs=138.6
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC--------------CccCCCHHHHhhcCCeEEEEeCCh
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG--------------AKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
+|+|||+|.||..+|..|...|++|.+|+|++++.+.+.+.+ +...++++++++++|+|++++|.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~- 95 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT- 95 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence 899999999999999999999999999999988777766532 33446788889999999999985
Q ss_pred hHHHHHhccccc----ccccCCC-CCEEEEecCC-ChhHHHHHHHHHHHc-C---CcEEeCccCCCCccccCCceEEEec
Q 022909 139 ESAMDVACGKHG----AASGMGP-GKGYVDVSTV-DGDTSKLINGHIKAT-G---ASFLEAPVSGSKKPAEDGQLIFLAA 208 (290)
Q Consensus 139 ~~~~~~~~~~~~----~~~~~~~-~~~lin~s~~-~~~~~~~l~~~l~~~-~---~~~~~~p~~~~~~~~~~~~~~~~~~ 208 (290)
..++.++ ++ +.+.+++ ++++|+++.+ .+...+.+.+.+.+. + ..++..|.+..+........+++.+
T Consensus 96 ~~~~~v~---~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~g~~~~~~~~~ 172 (366)
T 1evy_A 96 QFLRGFF---EKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIAS 172 (366)
T ss_dssp HHHHHHH---HHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEEEC
T ss_pred HHHHHHH---HHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHhCCceEEEEec
Confidence 6777776 33 5556777 8999999854 332223334444332 2 2233445443221122223345556
Q ss_pred CCHHHHHHHHHHHHHh--CCcEEEeCCcchHHHHHHH-----------------HHHHHHHH-HHHHHHHHHHHHCCCCH
Q 022909 209 GDKSLYNTVAPLLDIM--GKSRFYLGDVGNGAAMKLV-----------------VNMIMGRS-CTFSYSFLTLEFVDFLI 268 (290)
Q Consensus 209 ~~~~~~~~v~~ll~~~--G~~~~~~~~~g~a~~~k~~-----------------~n~~~~~~-~~~~ea~~l~~~~G~~~ 268 (290)
++++..+.++++|+.. |..++..++.....+.|.+ .|.....+ .++.|+..++++.|+++
T Consensus 173 ~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~Gi~~ 252 (366)
T 1evy_A 173 ADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDG 252 (366)
T ss_dssp SSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6788889999999999 8888777775444444443 44455566 89999999999999998
Q ss_pred HHHH
Q 022909 269 NTVT 272 (290)
Q Consensus 269 ~~~~ 272 (290)
+++.
T Consensus 253 ~~~~ 256 (366)
T 1evy_A 253 SAVF 256 (366)
T ss_dssp TTTT
T ss_pred cccc
Confidence 7654
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-18 Score=153.28 Aligned_cols=198 Identities=13% Similarity=0.045 Sum_probs=141.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-------CeEEEEeCCcc-----chhhHHhC--------------CCccCCCHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKS-----KCDPLISL--------------GAKYQPSPDEV 124 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-------~~V~~~d~~~~-----~~~~~~~~--------------g~~~~~~~~~~ 124 (290)
.++|+|||+|.||..+|..|...| ++|.+|+|+++ +.+.+.+. ++..+++++++
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea 100 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV 100 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence 468999999999999999999988 99999999987 66665542 23445678888
Q ss_pred hhcCCeEEEEeCChhHHHHHhcccccccc----cCCCCCEEEEecCCChh---HHHHHHHHHHHc---CCcEEeCccCCC
Q 022909 125 AASCDVTFAMLADPESAMDVACGKHGAAS----GMGPGKGYVDVSTVDGD---TSKLINGHIKAT---GASFLEAPVSGS 194 (290)
Q Consensus 125 ~~~aDivv~~~p~~~~~~~~~~~~~~~~~----~~~~~~~lin~s~~~~~---~~~~l~~~l~~~---~~~~~~~p~~~~ 194 (290)
++++|+|++++|. ..++.++ +++.+ .+++++++|+++.+-.. ..+.+.+.+.+. ...++..|.+..
T Consensus 101 ~~~aDvVilav~~-~~~~~vl---~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~ 176 (375)
T 1yj8_A 101 INDADLLIFIVPC-QYLESVL---ASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIAM 176 (375)
T ss_dssp HTTCSEEEECCCH-HHHHHHH---HHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCHH
T ss_pred HcCCCEEEEcCCH-HHHHHHH---HHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchHH
Confidence 8999999999984 7788887 34556 78889999999865332 112233333321 122334454332
Q ss_pred CccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHH-----------------HHHHHHHH-HHHHH
Q 022909 195 KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV-----------------VNMIMGRS-CTFSY 256 (290)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~-----------------~n~~~~~~-~~~~e 256 (290)
+........+++.+++++..+.++++|+..|.+++..++.....+.|.+ .|...+++ .++.|
T Consensus 177 ~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E 256 (375)
T 1yj8_A 177 DVAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINE 256 (375)
T ss_dssp HHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHH
Confidence 2222233345556677888899999999999988888886555554443 45556666 99999
Q ss_pred HHHHHHHC--CCCHHHHH
Q 022909 257 SFLTLEFV--DFLINTVT 272 (290)
Q Consensus 257 a~~l~~~~--G~~~~~~~ 272 (290)
+..++++. |++++++.
T Consensus 257 ~~~la~a~G~G~~~~~~~ 274 (375)
T 1yj8_A 257 MILFGKVFFQKFNENILL 274 (375)
T ss_dssp HHHHHHHHSSCCCGGGGG
T ss_pred HHHHHHHhccCCCcchhh
Confidence 99999999 69987764
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.3e-18 Score=149.95 Aligned_cols=196 Identities=10% Similarity=0.042 Sum_probs=140.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeC--CccchhhHHhCCC-----------ccCC--CHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR--TKSKCDPLISLGA-----------KYQP--SPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~--~~~~~~~~~~~g~-----------~~~~--~~~~~~~~aDivv~~~p 136 (290)
|+|+|||+|.||..+|..|...|++|++|+| ++++.+.+.+.+. ...+ ++.++++++|+|++++|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 5799999999999999999999999999999 8887777766553 3344 67778899999999998
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEecCCC----hhHHHHHHHHHHHc-CC----cEEeCccCCCCccccCCceEEEe
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVD----GDTSKLINGHIKAT-GA----SFLEAPVSGSKKPAEDGQLIFLA 207 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~----~~~~~~l~~~l~~~-~~----~~~~~p~~~~~~~~~~~~~~~~~ 207 (290)
.+ .+..++ +++.+ +++++++|+++.+- +...+.+.+.+.+. +. .+...|.............+++.
T Consensus 81 ~~-~~~~v~---~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 155 (335)
T 1txg_A 81 TD-GVLPVM---SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFS 155 (335)
T ss_dssp GG-GHHHHH---HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEE
T ss_pred hH-HHHHHH---HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHHHccCCcEEEEE
Confidence 64 677777 44567 88899999987553 23344566666542 22 12223332111111111234455
Q ss_pred cCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHH-----------------HHH-----HHHHHHHH-HHHHHHHHHHHHC
Q 022909 208 AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM-----------------KLV-----VNMIMGRS-CTFSYSFLTLEFV 264 (290)
Q Consensus 208 ~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~-----------------k~~-----~n~~~~~~-~~~~ea~~l~~~~ 264 (290)
+.+++..+.++++|+..|..++..++.....+. |+. .|.....+ .++.|+..++++.
T Consensus 156 ~~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~~~ 235 (335)
T 1txg_A 156 SPSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEIL 235 (335)
T ss_dssp CSCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999888888887665554 444 56555666 8999999999999
Q ss_pred CCCHHHHH
Q 022909 265 DFLINTVT 272 (290)
Q Consensus 265 G~~~~~~~ 272 (290)
|++++++.
T Consensus 236 G~~~~~~~ 243 (335)
T 1txg_A 236 GGDRETAF 243 (335)
T ss_dssp TSCGGGGG
T ss_pred CCCcchhh
Confidence 99987664
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-18 Score=151.06 Aligned_cols=191 Identities=15% Similarity=0.114 Sum_probs=137.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC---C-----ccCCCHHHHhhcCCeEEEEeCChhHHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG---A-----KYQPSPDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g---~-----~~~~~~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
|||+|||+|.||..+|..|...|++|++|+|++++.+.+...+ . ...++ .+.++++|+|++++|.+ .++.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~-~~~~ 78 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAW-QVSD 78 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGG-GHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHH-hHHH
Confidence 5799999999999999999999999999999987665543322 1 01233 46778999999999875 5777
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHH--cCCcE----EeCccCCCCccccCCceEEEe-cCCHHHHHH
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TGASF----LEAPVSGSKKPAEDGQLIFLA-AGDKSLYNT 216 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~--~~~~~----~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~ 216 (290)
++ +++.+.+++++++|+++.+. ...+.+.+.+.+ .+..+ ...| . ......+.+.+.. +++++..+.
T Consensus 79 v~---~~l~~~l~~~~~vv~~~~g~-~~~~~l~~~~~~~~~g~~~~~~~~~~p-~--~~~~~~g~~~i~~~~~~~~~~~~ 151 (291)
T 1ks9_A 79 AV---KSLASTLPVTTPILLIHNGM-GTIEELQNIQQPLLMGTTTHAARRDGN-V--IIHVANGITHIGPARQQDGDYSY 151 (291)
T ss_dssp HH---HHHHTTSCTTSCEEEECSSS-CTTGGGTTCCSCEEEEEECCEEEEETT-E--EEEEECCCEEEEESSGGGTTCTH
T ss_pred HH---HHHHhhCCCCCEEEEecCCC-CcHHHHHHhcCCeEEEEEeEccEEcCC-E--EEEecccceEEccCCCCcchHHH
Confidence 77 45667788899999986653 222334443332 11111 2233 1 2223345555443 345567788
Q ss_pred HHHHHHHhCCcEEEeCCcchHHHHHHHHHHHH------------------HHH-HHHHHHHHHHHHCCCCH--HHH
Q 022909 217 VAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM------------------GRS-CTFSYSFLTLEFVDFLI--NTV 271 (290)
Q Consensus 217 v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~------------------~~~-~~~~ea~~l~~~~G~~~--~~~ 271 (290)
++++|+..|..+++.++.+.+.+.|++.|... ..+ .++.|+..++++.|++. +.+
T Consensus 152 ~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~ 227 (291)
T 1ks9_A 152 LADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDL 227 (291)
T ss_dssp HHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999776 566 89999999999999986 555
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-18 Score=149.88 Aligned_cols=205 Identities=10% Similarity=0.024 Sum_probs=145.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHH-----------hCC--------------CccCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SLG--------------AKYQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~-----------~~g--------------~~~~~~~~~~~ 125 (290)
..+|+|||+|.||..+|..++..|++|.+||++++..+... +.| +..++++++++
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~ 85 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV 85 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence 47899999999999999999999999999999987543321 111 23457888999
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEE
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 205 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~ 205 (290)
+++|+|+.++|.+.+.+.-++ +++-+..+++++|-..+++-+. .++.+.+.+. -+++....|.++.. -+++-
T Consensus 86 ~~ad~ViEav~E~l~iK~~lf--~~l~~~~~~~aIlaSNTSsl~i--s~ia~~~~~p-~r~ig~HffNP~~~---m~LVE 157 (319)
T 3ado_A 86 EGVVHIQECVPENLDLKRKIF--AQLDSIVDDRVVLSSSSSCLLP--SKLFTGLAHV-KQCIVAHPVNPPYY---IPLVE 157 (319)
T ss_dssp TTEEEEEECCCSCHHHHHHHH--HHHHTTCCSSSEEEECCSSCCH--HHHHTTCTTG-GGEEEEEECSSTTT---CCEEE
T ss_pred ccCcEEeeccccHHHHHHHHH--HHHHHHhhhcceeehhhhhccc--hhhhhhccCC-CcEEEecCCCCccc---cchHH
Confidence 999999999999999887774 4556678889887544444333 3555555433 23444223333222 23344
Q ss_pred Eec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCC
Q 022909 206 LAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGN 282 (290)
Q Consensus 206 ~~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs 282 (290)
++. .+++.++.+.++++.+|+.++.+...-.+....-+. ...+.|++.+.++.+.++++++.++...++-.
T Consensus 158 iv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~------~~~~~EA~~lv~eGvas~edID~~~~~g~g~~ 231 (319)
T 3ado_A 158 LVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQ------YAIISEAWRLVEEGIVSPSDLDLVMSDGLGMR 231 (319)
T ss_dssp EEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHH------HHHHHHHHHHHHTTSSCHHHHHHHHHTTHHHH
T ss_pred hcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHH------HHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCC
Confidence 443 367999999999999999988664322333322221 15669999999999999999999999988877
Q ss_pred ccccCCC
Q 022909 283 LQYDGNF 289 (290)
Q Consensus 283 ~~~~~~~ 289 (290)
|.++|+|
T Consensus 232 ~a~mGPf 238 (319)
T 3ado_A 232 YAFIGPL 238 (319)
T ss_dssp HTTSCHH
T ss_pred CCCcchh
Confidence 8778776
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=149.01 Aligned_cols=197 Identities=12% Similarity=0.052 Sum_probs=139.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-------CeEEEEeCCcc-----chhhHHhC--------------CCccCCCHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKS-----KCDPLISL--------------GAKYQPSPDEV 124 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-------~~V~~~d~~~~-----~~~~~~~~--------------g~~~~~~~~~~ 124 (290)
.|+|+|||+|.||..+|..|...| ++|.+|+|+++ +.+.+.+. ++..+++++++
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA 87 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence 479999999999999999999988 89999999987 66555431 12334678888
Q ss_pred hhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChh---HHHHHHHHHHHc-C--CcEEeCccCCCCccc
Q 022909 125 AASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD---TSKLINGHIKAT-G--ASFLEAPVSGSKKPA 198 (290)
Q Consensus 125 ~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~---~~~~l~~~l~~~-~--~~~~~~p~~~~~~~~ 198 (290)
++++|+|++++|. ..++.++ +++.+.+++++++|+++.+-.. ..+.+.+.+.+. + ..+...|.+..+...
T Consensus 88 ~~~aD~Vilav~~-~~~~~v~---~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~v~~ 163 (354)
T 1x0v_A 88 AEDADILIFVVPH-QFIGKIC---DQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVAD 163 (354)
T ss_dssp HTTCSEEEECCCG-GGHHHHH---HHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCCEEEEECSCCHHHHHT
T ss_pred HcCCCEEEEeCCH-HHHHHHH---HHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCCEEEEECCCcHHHHHh
Confidence 8999999999985 6777777 4566778899999999875431 111222222221 2 223344543322111
Q ss_pred cCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHH-----------------HHHHHHHH-HHHHHHHHH
Q 022909 199 EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV-----------------VNMIMGRS-CTFSYSFLT 260 (290)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~-----------------~n~~~~~~-~~~~ea~~l 260 (290)
......++.+.+++..+.++++|+..|.+++..++.....+.|.+ .|....++ .++.|+..+
T Consensus 164 g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~~~l 243 (354)
T 1x0v_A 164 EKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAF 243 (354)
T ss_dssp TCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 222334455667888899999999999988888886555665554 45555666 999999999
Q ss_pred HHHCCC---CHHHH
Q 022909 261 LEFVDF---LINTV 271 (290)
Q Consensus 261 ~~~~G~---~~~~~ 271 (290)
+++.|+ +++++
T Consensus 244 a~a~G~~~~~~~~~ 257 (354)
T 1x0v_A 244 AKLFCSGPVSSATF 257 (354)
T ss_dssp HHHHSSSCCCGGGG
T ss_pred HHHhcCCCCCcccc
Confidence 999999 87765
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=137.95 Aligned_cols=162 Identities=17% Similarity=0.276 Sum_probs=117.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEE-EeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~-~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+|+|+|||+|+||..+++.|...|++|.+ ++|++++.+.+.+ .+.....+..+.++++|+|++++|. .....++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~--- 98 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIV--- 98 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHH---
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHH---
Confidence 47999999999999999999999999998 9999998887654 4665555566678999999999974 6677777
Q ss_pred ccccccCCCCCEEEEecCCCh------------hHHHHHHHHHHHcCCcEEe-Cc-----cCC-CCccccCCceEEEecC
Q 022909 149 HGAASGMGPGKGYVDVSTVDG------------DTSKLINGHIKATGASFLE-AP-----VSG-SKKPAEDGQLIFLAAG 209 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~------------~~~~~l~~~l~~~~~~~~~-~p-----~~~-~~~~~~~~~~~~~~~~ 209 (290)
+++.+ + +++++|+++.+-. ...+.+.+.+. +.+++. .| ++. ++.....+..+++.+.
T Consensus 99 ~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g~ 174 (220)
T 4huj_A 99 TQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP--GAKVVKAFNTLPAAVLAADPDKGTGSRVLFLSGN 174 (220)
T ss_dssp TTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST--TCEEEEESCSSCHHHHTSCSBCSSCEEEEEEEES
T ss_pred HHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC--CCCEEECCCCCCHHHhhhCcccCCCCeeEEEeCC
Confidence 33444 3 5889999976542 14556666664 223332 22 222 2211122234556677
Q ss_pred CHHHHHHHHHHHHHhCCcEEEeCCcchHHHH
Q 022909 210 DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM 240 (290)
Q Consensus 210 ~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~ 240 (290)
++++.+.++++++.+|++++++++.+.+.++
T Consensus 175 ~~~~~~~v~~l~~~~G~~~~~~G~l~~a~~~ 205 (220)
T 4huj_A 175 HSDANRQVAELISSLGFAPVDLGTLAASGPI 205 (220)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEeeCChhhcchh
Confidence 8899999999999999999999998877664
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.2e-18 Score=148.46 Aligned_cols=200 Identities=14% Similarity=0.133 Sum_probs=141.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-----C-CeEEEEeCCccchhhHHh-CCCccCC-------------CHHHHhhcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-----G-CDVTVWNRTKSKCDPLIS-LGAKYQP-------------SPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-----g-~~V~~~d~~~~~~~~~~~-~g~~~~~-------------~~~~~~~~aDi 130 (290)
.|+|+|||+|.||..+|..|... | ++|++|+| +++.+.+.+ .|+.... +..+.++++|+
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 86 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDY 86 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCE
Confidence 46999999999999999999998 9 99999999 777777776 6654332 33355788999
Q ss_pred EEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc----CCcEEeCccCCCCc--cccCCceE
Q 022909 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKK--PAEDGQLI 204 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~----~~~~~~~p~~~~~~--~~~~~~~~ 204 (290)
|++++|.. .+..++ +++.+.+++++++|+++.+. ...+.+.+.+.+. +..+.++++.++-. ....+...
T Consensus 87 vil~vk~~-~~~~v~---~~i~~~l~~~~~iv~~~nG~-~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~~ 161 (317)
T 2qyt_A 87 ILFCTKDY-DMERGV---AEIRPMIGQNTKILPLLNGA-DIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRELF 161 (317)
T ss_dssp EEECCSSS-CHHHHH---HHHGGGEEEEEEEEECSCSS-SHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEecCcc-cHHHHH---HHHHhhcCCCCEEEEccCCC-CcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCceE
Confidence 99999874 457766 34556677888999987653 3334555555432 22233444432111 11223333
Q ss_pred EEec----CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHH-------------------HHH-HHHHHHHHH
Q 022909 205 FLAA----GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM-------------------GRS-CTFSYSFLT 260 (290)
Q Consensus 205 ~~~~----~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~-------------------~~~-~~~~ea~~l 260 (290)
++.+ ++.+.. .+.++|+..|..+++.++...+.+.|++.|... .++ .++.|+..+
T Consensus 162 ~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~~~v 240 (317)
T 2qyt_A 162 YFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAEL 240 (317)
T ss_dssp EEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2321 235666 899999999998888899999999999999753 345 789999999
Q ss_pred HHHCCCCHH--HHHHHHhh
Q 022909 261 LEFVDFLIN--TVTMFLQS 277 (290)
Q Consensus 261 ~~~~G~~~~--~~~~~i~~ 277 (290)
+++.|++.+ .+.+.+..
T Consensus 241 ~~a~G~~~~~~~~~~~~~~ 259 (317)
T 2qyt_A 241 FRAKYGQVPDDVVQQLLDK 259 (317)
T ss_dssp HHHHTSCCCSSHHHHHHHH
T ss_pred HHHcCCCCChHHHHHHHHH
Confidence 999999864 56666544
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=136.21 Aligned_cols=172 Identities=17% Similarity=0.252 Sum_probs=127.9
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-C-------CccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G-------AKYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g-------~~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
|+|+||| +|.||+.+++.|...|++|.+++|++++.+.+.+. + +. ..+++++++++|+|++++|. ..++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~-~~~~ 78 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPW-EHAI 78 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCH-HHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCCh-hhHH
Confidence 5799999 99999999999999999999999998776655442 2 33 35778889999999999984 5566
Q ss_pred HHhcccccccccCCCCCEEEEecCCChh------------HHHHHHHHHHHcCCcEEeC--ccCCCCccc--cCCceEEE
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGD------------TSKLINGHIKATGASFLEA--PVSGSKKPA--EDGQLIFL 206 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~------------~~~~l~~~l~~~~~~~~~~--p~~~~~~~~--~~~~~~~~ 206 (290)
.++ +++.+.+ +++++|+++++-.. ..+.+.+.+. +.+++.. |+....... ..+.+.++
T Consensus 79 ~~~---~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (212)
T 1jay_A 79 DTA---RDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAARFANLDEKFDWDVP 152 (212)
T ss_dssp HHH---HHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHHHHHCTTCCCCEEEE
T ss_pred HHH---HHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHHHhhCcCCCCCccEE
Confidence 766 2344445 48899999875431 2566666664 3567764 443322221 34455666
Q ss_pred ecCC-HHHHHHHHHHHHHh-CCcEEEeCCcchHHHHHHHHHHHHHHH
Q 022909 207 AAGD-KSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVNMIMGRS 251 (290)
Q Consensus 207 ~~~~-~~~~~~v~~ll~~~-G~~~~~~~~~g~a~~~k~~~n~~~~~~ 251 (290)
++++ ++.++.++++++.+ |..++++++.+.+.++|.+.+.+....
T Consensus 153 ~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~~~~~ 199 (212)
T 1jay_A 153 VCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLILNIM 199 (212)
T ss_dssp EEESCHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHHHHHH
T ss_pred EECCcHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHHHHHHH
Confidence 6664 88899999999999 999999999999999999988765443
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=136.20 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=113.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
.++|+|||+|.||..+++.|...|++|.+|||+++ .++++|+|++++| +..++.++ ++
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~---~~ 76 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALA---KQ 76 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHH---HH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHH---HH
Confidence 68999999999999999999999999999999864 4578999999998 67788887 34
Q ss_pred ccccCCCCCEEEEecCCCh-hH------------HHHHHHHHHHcCCcEEe------CccCCCCccccCCceEE-EecCC
Q 022909 151 AASGMGPGKGYVDVSTVDG-DT------------SKLINGHIKATGASFLE------APVSGSKKPAEDGQLIF-LAAGD 210 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~-~~------------~~~l~~~l~~~~~~~~~------~p~~~~~~~~~~~~~~~-~~~~~ 210 (290)
+.+.++ ++++|+++++-. .+ .+.+.+.+. +.+++. .|.+..+......+..+ +.+.+
T Consensus 77 l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g~~ 153 (209)
T 2raf_A 77 YATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGND 153 (209)
T ss_dssp THHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEECSTTSCHHHHHHSEETTTEECEEEEEESC
T ss_pred HHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEEeeecccHhhccccccCCCCCceeEEcCCC
Confidence 555677 899999988554 11 345555443 355665 34433322222123333 44455
Q ss_pred HHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHH
Q 022909 211 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMI 247 (290)
Q Consensus 211 ~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~ 247 (290)
++..+.++++++.+|.+++++++.+.+.++|.+.+++
T Consensus 154 ~~~~~~v~~ll~~~G~~~~~~~~i~~a~~~K~i~~l~ 190 (209)
T 2raf_A 154 DSAKQRFTRALADSPLEVKDAGKLKRARELEAMGFMQ 190 (209)
T ss_dssp HHHHHHHHHHTTTSSCEEEEEESGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCceEeCCCHhHHHHhcchHHHH
Confidence 6889999999999999999999999999999887765
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.6e-19 Score=145.39 Aligned_cols=162 Identities=17% Similarity=0.241 Sum_probs=116.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+|+|+|||+|+||+.+++.|.+.|++|.+|+|+++ .+.+.+.++... +.+++++++|+|++++|. ..++.++ +
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~-~~~~~v~----~ 91 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHR-EHYDFLA----E 91 (201)
Confidence 68999999999999999999999999999999876 444544566555 778889999999999987 4566665 1
Q ss_pred ccccCCCCCEEEEecCCChh------HHHHHHHHHHHcCCcEEe-CccCCCCccccCCc-----eEEEecCCHHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVDGD------TSKLINGHIKATGASFLE-APVSGSKKPAEDGQ-----LIFLAAGDKSLYNTVA 218 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~------~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~ 218 (290)
+..+++++++||++++.+. ..+.+.+.+... +++. .|..+... ...+. ..++++++++.++.++
T Consensus 92 -l~~~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~--~vvra~~n~~a~~-~~~g~l~g~~~~~~~g~~~~~~~~v~ 167 (201)
T 2yjz_A 92 -LADSLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGA--HVVKAFNTISAWA-LQSGTLDASRQVFVCGNDSKAKDRVM 167 (201)
Confidence 2335678999999998763 223343333321 2222 22222111 11122 1456677788899999
Q ss_pred HHHHHhCCcEEEeCCcchHHHHHHH
Q 022909 219 PLLDIMGKSRFYLGDVGNGAAMKLV 243 (290)
Q Consensus 219 ~ll~~~G~~~~~~~~~g~a~~~k~~ 243 (290)
++|+.+|.+++++++.+.+.++|.+
T Consensus 168 ~ll~~~G~~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 168 DIARTLGLTPLDQGSLVAAKEIENY 192 (201)
Confidence 9999999999999999999988743
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.70 E-value=7e-17 Score=144.37 Aligned_cols=202 Identities=16% Similarity=0.119 Sum_probs=133.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|||+|.||.++|+.|+..|++|.++++++++ .+...+.|+... +++++++++|+|++++|.. ....++ .+
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~-~~~~v~--~~ 91 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDE-FQGRLY--KE 91 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHH-HHHHHH--HH
T ss_pred CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcH-HHHHHH--HH
Confidence 689999999999999999999999999999998765 444555777665 8889999999999999864 457777 22
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHH-HcCCcEEe-CccCCCCcc------ccCCceEEEe---cCCHHHHHHHH
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIK-ATGASFLE-APVSGSKKP------AEDGQLIFLA---AGDKSLYNTVA 218 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~-~~~~~~~~-~p~~~~~~~------~~~~~~~~~~---~~~~~~~~~v~ 218 (290)
++.+.++++++++++++ ... .+ +.+. ..++.++. +| .++... .+.+...+++ ..++++.+.+.
T Consensus 92 ~i~~~l~~~~ivi~~~g---v~~-~~-~~~~~~~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~ 165 (338)
T 1np3_A 92 EIEPNLKKGATLAFAHG---FSI-HY-NQVVPRADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVAL 165 (338)
T ss_dssp HTGGGCCTTCEEEESCC---HHH-HT-TSSCCCTTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHH
T ss_pred HHHhhCCCCCEEEEcCC---chh-HH-HhhcCCCCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHH
Confidence 56778999999998743 222 22 2222 22445554 56 222211 1224444433 34567889999
Q ss_pred HHHHHhCC-c--EEEeCCcchHHHHHHHHH-HHHHHH-HHHHHHHHHHHHCCCCHHHH-------HHHHhhc-CCCC
Q 022909 219 PLLDIMGK-S--RFYLGDVGNGAAMKLVVN-MIMGRS-CTFSYSFLTLEFVDFLINTV-------TMFLQSF-SFGN 282 (290)
Q Consensus 219 ~ll~~~G~-~--~~~~~~~g~a~~~k~~~n-~~~~~~-~~~~ea~~l~~~~G~~~~~~-------~~~i~~~-~~gs 282 (290)
++++.+|. + ++.+....+.....+.++ .+.+.. ..+..++..+.+.|++++.+ .+++.++ ..|+
T Consensus 166 ~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a~~e~~~~~~~~~~~~~~gg 242 (338)
T 1np3_A 166 SYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGG 242 (338)
T ss_dssp HHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHhcC
Confidence 99999998 4 666654334433334433 122222 33344444557899999887 5677666 3444
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-17 Score=143.38 Aligned_cols=183 Identities=14% Similarity=0.130 Sum_probs=116.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeE-EEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDV-TVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+|+|+|||+|+||..+++.|... ++| .+|||++++.+.+.+ .+. .+.+++++++++|+|++++|... ...++
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~~~v~--- 75 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-IKTVA--- 75 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-HHHHH---
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-HHHHH---
Confidence 47899999999999999999887 888 599999888777654 466 66678888889999999998754 56666
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcccc-CCceEEEecCCHHHHHHHHHHHHHhCCc
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE-DGQLIFLAAGDKSLYNTVAPLLDIMGKS 227 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~~G~~ 227 (290)
+++. ++++++||++.+.+.+. +.+. ..+..+...++.+++.... .....+...++++.++.++++++.+|..
T Consensus 76 ~~l~---~~~~ivi~~s~~~~~~~--l~~~--~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lG~~ 148 (276)
T 2i76_A 76 NHLN---LGDAVLVHCSGFLSSEI--FKKS--GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGK 148 (276)
T ss_dssp TTTC---CSSCCEEECCSSSCGGG--GCSS--SEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSC
T ss_pred HHhc---cCCCEEEECCCCCcHHH--HHHh--hccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHHHHhCCC
Confidence 2222 68899999986644432 1111 0001111233444332222 2233345566677789999999999988
Q ss_pred EEEeCCcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q 022909 228 RFYLGDVGNG---AAMKLVVNMIMGRSCTFSYSFLTLEFVDFLIN 269 (290)
Q Consensus 228 ~~~~~~~g~a---~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~ 269 (290)
++++++.+.. ...++..|+.. ..+.++..++++.|++.+
T Consensus 149 ~~~v~~~~~~~~~~~~~l~~n~~~---~~~~~a~~~~~~~Gl~~~ 190 (276)
T 2i76_A 149 YFVIPSEKKKAYHLAAVIASNFPV---ALAYLSKRIYTLLGLDEP 190 (276)
T ss_dssp EEECCGGGHHHHHHHHHHHHTTHH---HHHHHHHHHHHTTTCSCH
T ss_pred EEEECHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCChH
Confidence 8888865433 22344455333 455777788999999988
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=154.87 Aligned_cols=188 Identities=13% Similarity=0.113 Sum_probs=131.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-----------HhCC-------------CccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~ 126 (290)
.++|+|||+|.||..+|..++..|++|++||+++++.+.. .+.| +..++++ +.++
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~ 392 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG 392 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence 4789999999999999999999999999999998776542 1223 2344566 6789
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEE
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 206 (290)
+||+||+++|.+.+.+..++ +++.+.+++++++++.+++.+.. ++.+.+.. .-+++....+.+.. ..+++.+
T Consensus 393 ~aDlVIeaV~e~~~vk~~v~--~~l~~~~~~~~IlasntStl~i~--~la~~~~~-~~~~ig~hf~~P~~---~~~lvev 464 (715)
T 1wdk_A 393 NVDLVVEAVVENPKVKQAVL--AEVENHVREDAILASNTSTISIS--LLAKALKR-PENFVGMHFFNPVH---MMPLVEV 464 (715)
T ss_dssp GCSEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCHH--HHGGGCSC-GGGEEEEECCSSTT---TCCEEEE
T ss_pred CCCEEEEcCCCCHHHHHHHH--HHHHhhCCCCeEEEeCCCCCCHH--HHHHHhcC-ccceEEEEccCCcc---cCceEEE
Confidence 99999999998887765542 34667788999987544433332 34444322 12344422232221 2233434
Q ss_pred ecC---CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 022909 207 AAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFL 275 (290)
Q Consensus 207 ~~~---~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i 275 (290)
+.+ +++.++.+.++++.+|+.++++++. .+. ++++++. ..++|++.++++ |++++++++++
T Consensus 465 v~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~Nril~---~~~~Ea~~l~~~-G~~~~~id~~~ 528 (715)
T 1wdk_A 465 IRGEKSSDLAVATTVAYAKKMGKNPIVVNDC-PGF---LVNRVLF---PYFGGFAKLVSA-GVDFVRIDKVM 528 (715)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCEEEEEESC-TTT---THHHHHH---HHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHhCCEeEEEcCC-CCh---hhhHHHH---HHHHHHHHHHHC-CCCHHHHHHHH
Confidence 443 7899999999999999999999874 222 2333332 457899999987 99999999999
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-16 Score=129.96 Aligned_cols=165 Identities=18% Similarity=0.255 Sum_probs=118.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|+|||+|.||+.+++.|...|++|.+++|++++.+.+.+.|+... +++++++++|+|++++|. ...+.++ +
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~---~- 101 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLC---S- 101 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGG---G-
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HHHHHHH---H-
Confidence 578999999999999999999999999999999887776666666655 788889999999999985 4555554 1
Q ss_pred ccccCCCCCEEEEecCCChhHHH--------HHHHHHHHcCCcEEe--CccCCC---CccccCCceEEEecCCHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSK--------LINGHIKATGASFLE--APVSGS---KKPAEDGQLIFLAAGDKSLYNTV 217 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~--------~l~~~l~~~~~~~~~--~p~~~~---~~~~~~~~~~~~~~~~~~~~~~v 217 (290)
+...+ +++++|+++++...... .+.+.+. +.+++. .++.+. +........+++.+++++.++.+
T Consensus 102 l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~--~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v 178 (215)
T 2vns_A 102 LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP--TCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAV 178 (215)
T ss_dssp GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT--TSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHHHHH
T ss_pred HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC--CCeEEeccccccHhHhcccccCCceeEEEecCCHHHHHHH
Confidence 22334 78999999998865431 1122222 223332 111110 00111122456778889999999
Q ss_pred HHHHHHhCCcEEEeCCcchHHHHHHHH
Q 022909 218 APLLDIMGKSRFYLGDVGNGAAMKLVV 244 (290)
Q Consensus 218 ~~ll~~~G~~~~~~~~~g~a~~~k~~~ 244 (290)
+++++.+|.+++++++.+.+.+++.+.
T Consensus 179 ~~ll~~~G~~~~~~g~~~~~~~~e~~~ 205 (215)
T 2vns_A 179 SEMALAMGFMPVDMGSLASAWEVEAMP 205 (215)
T ss_dssp HHHHHHTTCEEEECCSGGGHHHHHHSC
T ss_pred HHHHHHcCCceEeecchhhhhHhhhhh
Confidence 999999999999999999999887543
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.2e-16 Score=150.72 Aligned_cols=189 Identities=12% Similarity=0.059 Sum_probs=130.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------CC-------------CccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 126 (290)
.++|+|||+|.||..+|..++..|++|++||++++..+...+ .| +...+++ +.++
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~ 390 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFR 390 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGT
T ss_pred CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHC
Confidence 478999999999999999999999999999999876654311 12 2334566 5689
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEE
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 206 (290)
+||+||+++|.+.+++..++ +++.+.+++++++++.+++.+.+ .+.+.+.. .-+++....+.++. ..+++.+
T Consensus 391 ~aDlVIeaVpe~~~vk~~v~--~~l~~~~~~~~IlasntStl~i~--~la~~~~~-p~~~iG~hf~~P~~---~~~lvev 462 (725)
T 2wtb_A 391 DVDMVIEAVIENISLKQQIF--ADLEKYCPQHCILASNTSTIDLN--KIGERTKS-QDRIVGAHFFSPAH---IMPLLEI 462 (725)
T ss_dssp TCSEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH--HHTTTCSC-TTTEEEEEECSSTT---TCCEEEE
T ss_pred CCCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCHH--HHHHHhcC-CCCEEEecCCCCcc---cCceEEE
Confidence 99999999999877765552 34566788999886544433332 34443322 12344422232221 2234444
Q ss_pred ecC---CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Q 022909 207 AAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQ 276 (290)
Q Consensus 207 ~~~---~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~ 276 (290)
+.+ ++++++.+.++++.+|+.++++++. .+. ++++++. ..++|++.++++ |++++++++++.
T Consensus 463 v~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~Nril~---~~~~Ea~~l~~~-G~~~e~id~~~~ 527 (725)
T 2wtb_A 463 VRTNHTSAQVIVDLLDVGKKIKKTPVVVGNC-TGF---AVNRMFF---PYTQAAMFLVEC-GADPYLIDRAIS 527 (725)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCEEEEEESS-TTT---THHHHHH---HHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHhCCEEEEECCC-ccH---HHHHHHH---HHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 444 7899999999999999999999874 222 2233332 457999999988 999999999993
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-15 Score=139.42 Aligned_cols=189 Identities=16% Similarity=0.174 Sum_probs=128.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------CC-----------CccCCCHHHHhhcC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-----------AKYQPSPDEVAASC 128 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-----------~~~~~~~~~~~~~a 128 (290)
.++|+|||+|.||..+|..++..|++|++||++++..+...+ .| ...++++ +.+++|
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a 115 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV 115 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence 478999999999999999999999999999999876554322 11 1234566 567899
Q ss_pred CeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEec
Q 022909 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA 208 (290)
Q Consensus 129 Divv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 208 (290)
|+||+++|.+.+.+..++ +++.+.++++++|++. +.++... .+.+.+.. ..+++....+.+.. ..+++.++.
T Consensus 116 DlVIeaVpe~~~~k~~v~--~~l~~~~~~~~ii~sn-Ts~~~~~-~la~~~~~-~~~~ig~hf~~P~~---~~~lvevv~ 187 (463)
T 1zcj_A 116 DLVVEAVFEDMNLKKKVF--AELSALCKPGAFLCTN-TSALNVD-DIASSTDR-PQLVIGTHFFSPAH---VMRLLEVIP 187 (463)
T ss_dssp SEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEEC-CSSSCHH-HHHTTSSC-GGGEEEEEECSSTT---TCCEEEEEE
T ss_pred CEEEEcCCCCHHHHHHHH--HHHHhhCCCCeEEEeC-CCCcCHH-HHHHHhcC-CcceEEeecCCCcc---cceeEEEeC
Confidence 999999998765554442 3455678899998864 3333322 55554432 12344422222211 223333433
Q ss_pred ---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Q 022909 209 ---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQ 276 (290)
Q Consensus 209 ---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~ 276 (290)
++++.++.+.++++.+|+.++++++. .+. ++++++. ..++|++.+.++ |++++++++++.
T Consensus 188 g~~t~~e~~~~~~~l~~~lGk~~v~v~~~-~gf---i~Nrll~---~~~~ea~~l~~~-G~~~~~id~~~~ 250 (463)
T 1zcj_A 188 SRYSSPTTIATVMSLSKKIGKIGVVVGNC-YGF---VGNRMLA---PYYNQGFFLLEE-GSKPEDVDGVLE 250 (463)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEBCCS-TTT---THHHHHH---HHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCEEEEECCC-ccH---HHHHHHH---HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 57899999999999999999999862 222 2222222 235889888877 899999999997
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-18 Score=157.07 Aligned_cols=133 Identities=14% Similarity=0.047 Sum_probs=106.9
Q ss_pred cCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 27 FCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 27 ~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
+.|++....+.+++| |.+... ..+. +++|+|||+|.||+.+|++++.+|++|++||+++.+
T Consensus 232 l~r~~~~~~~~l~~g-w~r~~~-----~~l~-------------GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~ 292 (479)
T 1v8b_A 232 KYDNVYGCRHSLPDG-LMRATD-----FLIS-------------GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPIC 292 (479)
T ss_dssp TTHHHHHHHHHHHHH-HHHHHC-----CCCT-------------TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HHhchHhHHHHHhhh-hhhccc-----cccC-------------CCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhh
Confidence 358887777777777 853111 2333 899999999999999999999999999999999876
Q ss_pred hhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCCh-hHHHHHHH--HHHHcC
Q 022909 107 CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLING--HIKATG 183 (290)
Q Consensus 107 ~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~-~~~~~l~~--~l~~~~ 183 (290)
.......|+.. .+++++++++|+|++++ .+++++ +++.++.||+|+++||++|+.+ +++++|.+ +++++.
T Consensus 293 ~~~a~~~g~~~-~~l~ell~~aDiVi~~~----~t~~lI--~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~ 365 (479)
T 1v8b_A 293 AIQAVMEGFNV-VTLDEIVDKGDFFITCT----GNVDVI--KLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIEN 365 (479)
T ss_dssp HHHHHTTTCEE-CCHHHHTTTCSEEEECC----SSSSSB--CHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEE
T ss_pred HHHHHHcCCEe-cCHHHHHhcCCEEEECC----Chhhhc--CHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeee
Confidence 54444556654 48999999999999995 456777 5677899999999999999999 79999999 887664
Q ss_pred Cc
Q 022909 184 AS 185 (290)
Q Consensus 184 ~~ 185 (290)
+.
T Consensus 366 I~ 367 (479)
T 1v8b_A 366 VK 367 (479)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-18 Score=157.41 Aligned_cols=107 Identities=15% Similarity=0.053 Sum_probs=90.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|+|||+|.||+.+|++++.+|++|++||+++.+.......|... .+++++++++|+|++++ .+++++ +++
T Consensus 277 GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~----~t~~lI--~~~ 349 (494)
T 3d64_A 277 GKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTAT----GNYHVI--NHD 349 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECS----SSSCSB--CHH
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECC----Cccccc--CHH
Confidence 89999999999999999999999999999999987543334456655 48999999999999997 356777 667
Q ss_pred ccccCCCCCEEEEecCCCh-hHHHHHHHHHHHcCCc
Q 022909 151 AASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGAS 185 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~-~~~~~l~~~l~~~~~~ 185 (290)
.++.||++++|||++|+.+ +++++| ++|+++.+.
T Consensus 350 ~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~ 384 (494)
T 3d64_A 350 HMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK 384 (494)
T ss_dssp HHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE
T ss_pred HHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc
Confidence 7899999999999999999 499999 888766543
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=122.25 Aligned_cols=152 Identities=15% Similarity=0.160 Sum_probs=112.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
.|||+|||+|.||.++++.|+..|++|.+|++. ++ ++++| ++++|.. .+..++ ++
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-ai~~vl---~~ 60 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-GVEGYV---EK 60 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-CHHHHH---HH
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-HHHHHH---HH
Confidence 589999999999999999999999999999982 12 57799 8889885 777777 45
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF 229 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~ 229 (290)
+.+.++++++++++|..... ++.+.+...+..|+. ||+++. ..++..+++++++.++++++.+|.+++
T Consensus 61 l~~~l~~g~ivvd~sgs~~~---~vl~~~~~~g~~fvg~HPm~g~--------~~~i~a~d~~a~~~l~~L~~~lG~~vv 129 (232)
T 3dfu_A 61 LSAFARRGQMFLHTSLTHGI---TVMDPLETSGGIVMSAHPIGQD--------RWVASALDELGETIVGLLVGELGGSIV 129 (232)
T ss_dssp HHTTCCTTCEEEECCSSCCG---GGGHHHHHTTCEEEEEEEEETT--------EEEEEESSHHHHHHHHHHHHHTTCEEC
T ss_pred HHHhcCCCCEEEEECCcCHH---HHHHHHHhCCCcEEEeeeCCCC--------ceeeeCCCHHHHHHHHHHHHHhCCEEE
Confidence 66778999999998644332 233334456788886 898754 244555688889999999999999999
Q ss_pred EeCCcchHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 022909 230 YLGDVGNGAAMKLV--VNMIMGRSCTFSYSFLTL 261 (290)
Q Consensus 230 ~~~~~g~a~~~k~~--~n~~~~~~~~~~ea~~l~ 261 (290)
.+++..+..+...+ .|.+. ....++..+.
T Consensus 130 ~~~~~~hd~~~AAvsh~nhLv---~L~~~A~~ll 160 (232)
T 3dfu_A 130 EIADDKRAQLAAALTYAGFLS---TLQRDASYFL 160 (232)
T ss_dssp CCCGGGHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred EeCHHHHhHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 99887666663333 33332 4445555544
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=133.57 Aligned_cols=112 Identities=18% Similarity=0.222 Sum_probs=87.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC--CCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+++|+|||+|.||+.+++.++.+|++|++|||++++.+.+.+.|.... .+++++++++|+|++|+|. +++ +
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i--~ 227 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-----LVV--T 227 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----CCB--C
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-----HHh--C
Confidence 799999999999999999999999999999999876655555665532 4788899999999999986 344 3
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccC
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~ 192 (290)
++.++.|++++++||+++++... .+ +..+..|+.++..|.+
T Consensus 228 ~~~l~~mk~~~~lin~ar~~~~~--~~-~~a~~~Gv~~~~~~~l 268 (293)
T 3d4o_A 228 ANVLAEMPSHTFVIDLASKPGGT--DF-RYAEKRGIKALLVPGL 268 (293)
T ss_dssp HHHHHHSCTTCEEEECSSTTCSB--CH-HHHHHHTCEEEECCCH
T ss_pred HHHHHhcCCCCEEEEecCCCCCC--CH-HHHHHCCCEEEECCCC
Confidence 45577899999999999865433 12 4445567777655543
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=132.62 Aligned_cols=203 Identities=14% Similarity=0.036 Sum_probs=129.7
Q ss_pred C-CeEEEEcccHhHHHHHHHHHHC------CCeEEEEeCCcc-chhhHHhCCCcc----CCCHHHHhhcCCeEEEEeCCh
Q 022909 71 P-GRIGFLGMGIMGTPMAQNLLKA------GCDVTVWNRTKS-KCDPLISLGAKY----QPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~-~~IgiiG~G~iG~~la~~l~~~------g~~V~~~d~~~~-~~~~~~~~g~~~----~~~~~~~~~~aDivv~~~p~~ 138 (290)
+ +||||||+|.||.++|+.|+.. |++|++.+++.+ ..+...+.|+.. ..++.++++++|+|++++|..
T Consensus 53 GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~ 132 (525)
T 3fr7_A 53 GIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDA 132 (525)
T ss_dssp TCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHH
T ss_pred CCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChH
Confidence 7 9999999999999999999998 999987776543 344455677765 258899999999999999875
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHH--HHHHcCCcEEe-CccCCCCc-------c---ccCCce-E
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING--HIKATGASFLE-APVSGSKK-------P---AEDGQL-I 204 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~--~l~~~~~~~~~-~p~~~~~~-------~---~~~~~~-~ 204 (290)
.. ..++ +++.+.|++|++|+.. .| .+...+.+ .....++.++. +|...+.. . .+.+.. .
T Consensus 133 ~~-~eVl---~eI~p~LK~GaILs~A-aG--f~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~l 205 (525)
T 3fr7_A 133 AQ-ADNY---EKIFSHMKPNSILGLS-HG--FLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 205 (525)
T ss_dssp HH-HHHH---HHHHHHSCTTCEEEES-SS--HHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEE
T ss_pred HH-HHHH---HHHHHhcCCCCeEEEe-CC--CCHHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCccEE
Confidence 54 4566 3578899999986443 33 22222222 01113455555 67655443 1 013444 3
Q ss_pred EEecC--CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHH--HHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcC
Q 022909 205 FLAAG--DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVV--NMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFS 279 (290)
Q Consensus 205 ~~~~~--~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~--n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~ 279 (290)
+.... +.++.+.+..++..+|...++-.......-..+.. ..+.....++.|++ +.+.+.|++++.++....+.+
T Consensus 206 iAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAlieA~~d~lVe~G~~pe~Ay~~~~qel 285 (525)
T 3fr7_A 206 FAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGI 285 (525)
T ss_dssp EEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33322 34788999999999998643222221111111111 11222222233444 667999999999999988875
Q ss_pred C
Q 022909 280 F 280 (290)
Q Consensus 280 ~ 280 (290)
+
T Consensus 286 ~ 286 (525)
T 3fr7_A 286 T 286 (525)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.8e-14 Score=125.80 Aligned_cols=190 Identities=19% Similarity=0.179 Sum_probs=131.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-------------cCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------------YQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------------~~~~~~~~~~~aDivv~~~p~ 137 (290)
.|||+|||+|.||..+|..|...|++|.+|+|+ ++.+.+.+.|+. ..++.++ ++++|+|++++|.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~ 80 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA 80 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence 489999999999999999999999999999996 456666665543 2346666 5889999999976
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEecCCC------------------hhHHHHHHHHHHHcCCcEEeC------ccCC
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVD------------------GDTSKLINGHIKATGASFLEA------PVSG 193 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~------------------~~~~~~l~~~l~~~~~~~~~~------p~~~ 193 (290)
..++.++ +++.+.+++++++|.+..|- ....+.+.+.+.... ++.+ ...+
T Consensus 81 -~~~~~~~---~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~--v~~gv~~~~a~~~~ 154 (335)
T 3ghy_A 81 -PALESVA---AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRH--VLGCVVHLTCATVS 154 (335)
T ss_dssp -HHHHHHH---GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGG--EEEEEECCCEEESS
T ss_pred -hhHHHHH---HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCccc--EEEEEEEEEEEEcC
Confidence 6778887 55677888999999988773 223345556554332 2211 1111
Q ss_pred CCcc--ccCCceEEEe--cCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHH---------------------HH
Q 022909 194 SKKP--AEDGQLIFLA--AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM---------------------IM 248 (290)
Q Consensus 194 ~~~~--~~~~~~~~~~--~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~---------------------~~ 248 (290)
+-.. ...+.+.+-. +.+.+..+.+.++|+..|.+++...+.....|.|++.|. ..
T Consensus 155 pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~~ 234 (335)
T 3ghy_A 155 PGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLVS 234 (335)
T ss_dssp TTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHHH
T ss_pred CcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcChHHH
Confidence 1011 1122222211 123466788999999999988888888888888866432 23
Q ss_pred HHH-HHHHHHHHHHHHCCCCH
Q 022909 249 GRS-CTFSYSFLTLEFVDFLI 268 (290)
Q Consensus 249 ~~~-~~~~ea~~l~~~~G~~~ 268 (290)
.++ .++.|+..++++.|++.
T Consensus 235 ~l~~~~~~E~~~va~a~G~~~ 255 (335)
T 3ghy_A 235 AFCLAVMAEAKAIGARIGCPI 255 (335)
T ss_dssp HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 445 78899999999999764
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-14 Score=127.77 Aligned_cols=196 Identities=13% Similarity=0.129 Sum_probs=124.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-CC--------------ccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GA--------------KYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g~--------------~~~~~~~~~~~~aDivv~~~ 135 (290)
.|+|+|||+|.||..+|..|...|++|.+|+|++++.+.+.+. ++ ...++++++++++|+|++++
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v 83 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 83 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeC
Confidence 5899999999999999999999999999999998887777654 22 24567888889999999999
Q ss_pred CChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcC---CcEEe---CccCCCCcccc-------CCc
Q 022909 136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG---ASFLE---APVSGSKKPAE-------DGQ 202 (290)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~---~~~~~---~p~~~~~~~~~-------~~~ 202 (290)
|.+. ...++ +++.+.+++++++|++....... .++.+.+.+.+ +.+++ +|+.+...... .+.
T Consensus 84 ~~~~-~~~~~---~~l~~~l~~~~~vv~~~~~~~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~ 158 (359)
T 1bg6_A 84 PAIH-HASIA---ANIASYISEGQLIILNPGATGGA-LEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGA 158 (359)
T ss_dssp CGGG-HHHHH---HHHGGGCCTTCEEEESSCCSSHH-HHHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSC
T ss_pred CchH-HHHHH---HHHHHhCCCCCEEEEcCCCchHH-HHHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecc
Confidence 8754 46666 45667789999999884423333 33555565543 44544 55543221110 112
Q ss_pred eEEEe---cCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHH--------------------------------HHHH
Q 022909 203 LIFLA---AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV--------------------------------VNMI 247 (290)
Q Consensus 203 ~~~~~---~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~--------------------------------~n~~ 247 (290)
+.+-. +++++..+.+++++..+ ....+. |.|++ .+..
T Consensus 159 ~~~g~~~~~~~~~~~~~l~~~~~~~----~~~~di----~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~ 230 (359)
T 1bg6_A 159 MDFACLPAAKAGWALEQIGSVLPQY----VAVENV----LHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSV 230 (359)
T ss_dssp EEEEEESGGGHHHHHHHHTTTCTTE----EECSCH----HHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHH
T ss_pred eEEEeccccccHHHHHHHHHHhhhc----EEcCCh----HhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHH
Confidence 11111 22334556666666443 112221 11111 1112
Q ss_pred HHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcC
Q 022909 248 MGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFS 279 (290)
Q Consensus 248 ~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~ 279 (290)
..++ ..+.|+..++++.|++.+++.+.+....
T Consensus 231 ~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~ 263 (359)
T 1bg6_A 231 GSLAEKVDAERIAIAKAFDLNVPSVCEWYKESY 263 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHh
Confidence 3445 8889999999999999877777766543
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-14 Score=124.98 Aligned_cols=111 Identities=20% Similarity=0.298 Sum_probs=88.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc--CCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY--QPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~--~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+++|+|||+|.||+.+++.+..+|++|++|||++++.+.+.+.|... ..+++++++++|+|++|+|. +++ +
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i--~ 229 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-----MIL--N 229 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----CCB--C
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----hhh--C
Confidence 79999999999999999999999999999999987666555556543 25788999999999999997 344 4
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCcc
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 191 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~ 191 (290)
++.++.|++++++||+++++.... + +.....++.+++.|.
T Consensus 230 ~~~~~~mk~g~~lin~a~g~~~~~--~-~~a~~~G~~~i~~pg 269 (300)
T 2rir_A 230 QTVLSSMTPKTLILDLASRPGGTD--F-KYAEKQGIKALLAPG 269 (300)
T ss_dssp HHHHTTSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECCC
T ss_pred HHHHHhCCCCCEEEEEeCCCCCcC--H-HHHHHCCCEEEECCC
Confidence 456788999999999999754432 2 445556788877763
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-13 Score=120.10 Aligned_cols=188 Identities=15% Similarity=0.088 Sum_probs=129.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC---------------ccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA---------------KYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~---------------~~~~~~~~~~~~aDivv~~~ 135 (290)
.|+|+|||+|.||..+|..|...|++|.+|+|++ .+.+++.|+ ..+++.+++.+.+|+|++++
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilav 79 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCI 79 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEec
Confidence 5899999999999999999999999999999986 255544332 22356666666899999999
Q ss_pred CChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC-------CCccccCCceEEEe-
Q 022909 136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG-------SKKPAEDGQLIFLA- 207 (290)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~-------~~~~~~~~~~~~~~- 207 (290)
|. ..++.++ +.+.+.+++++++|.+..|-. ..+.+.+.+... +++.++.+. ++. ...++-.+..
T Consensus 80 K~-~~~~~~l---~~l~~~l~~~t~Iv~~~nGi~-~~~~l~~~~~~~--~vl~g~~~~~a~~~~pg~v-~~~~~~~~~ig 151 (320)
T 3i83_A 80 KV-VEGADRV---GLLRDAVAPDTGIVLISNGID-IEPEVAAAFPDN--EVISGLAFIGVTRTAPGEI-WHQAYGRLMLG 151 (320)
T ss_dssp CC-CTTCCHH---HHHTTSCCTTCEEEEECSSSS-CSHHHHHHSTTS--CEEEEEEEEEEEEEETTEE-EEEEEEEEEEE
T ss_pred CC-CChHHHH---HHHHhhcCCCCEEEEeCCCCC-hHHHHHHHCCCC--cEEEEEEEeceEEcCCCEE-EECCCCEEEEe
Confidence 86 4455565 445677888999988876543 234555555433 344443322 111 1111112222
Q ss_pred ---cCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHH--------------------HHHH-HHHHHHHHHHHH
Q 022909 208 ---AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMI--------------------MGRS-CTFSYSFLTLEF 263 (290)
Q Consensus 208 ---~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~--------------------~~~~-~~~~ea~~l~~~ 263 (290)
+.+.+..+.+.++|+..|.+++...+.....|.|++.|.. ..++ ..+.|+..++++
T Consensus 152 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~~va~a 231 (320)
T 3i83_A 152 NYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIRAVAAA 231 (320)
T ss_dssp ESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 2345677889999999999998888988888988877642 1224 688899999999
Q ss_pred CCCCH
Q 022909 264 VDFLI 268 (290)
Q Consensus 264 ~G~~~ 268 (290)
.|++.
T Consensus 232 ~G~~l 236 (320)
T 3i83_A 232 NGHPL 236 (320)
T ss_dssp TTCCC
T ss_pred cCCCC
Confidence 99873
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-12 Score=115.75 Aligned_cols=187 Identities=17% Similarity=0.139 Sum_probs=124.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc--------------cCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------------YQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--------------~~~~~~~~~~~aDivv~~~p 136 (290)
.|||+|||+|.||..+|..|...|++|++|+|++ .+.+++.|+. .+++.++ ++.+|+|++++|
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk 78 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLK 78 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecC
Confidence 5899999999999999999999999999999986 3556554432 1245544 678999999997
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCC----cEEeCccCCCCcc--ccCCceEEEe--c
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA----SFLEAPVSGSKKP--AEDGQLIFLA--A 208 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~----~~~~~p~~~~~~~--~~~~~~~~~~--~ 208 (290)
. ..++.++ +.+.+.+++++++|.+..|-. ..+.+.+.+....+ .+..+-..++-.. ...+.+.+-. +
T Consensus 79 ~-~~~~~~l---~~l~~~l~~~~~iv~l~nGi~-~~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~ 153 (312)
T 3hn2_A 79 T-FANSRYE---ELIRPLVEEGTQILTLQNGLG-NEEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLP 153 (312)
T ss_dssp G-GGGGGHH---HHHGGGCCTTCEEEECCSSSS-HHHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSC
T ss_pred C-CCcHHHH---HHHHhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCC
Confidence 5 5566666 456677889999998866542 33456666644321 1111111111111 1112222211 1
Q ss_pred CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHH---------------------HHHH-HHHHHHHHHHHHCC
Q 022909 209 GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMI---------------------MGRS-CTFSYSFLTLEFVD 265 (290)
Q Consensus 209 ~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~---------------------~~~~-~~~~ea~~l~~~~G 265 (290)
.+.+..+.+.++|+..|.+++...+.....|.|++-|.. ..++ ..+.|+..++++.|
T Consensus 154 ~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G 232 (312)
T 3hn2_A 154 RDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQG 232 (312)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcC
Confidence 235677889999999999998888888888888776653 1224 67789999999999
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-13 Score=118.48 Aligned_cols=184 Identities=12% Similarity=0.157 Sum_probs=129.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC-------------ccCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA-------------KYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~-------------~~~~~~~~~~~~aDivv~~~p~ 137 (290)
.++|+|||+|.||..+|..|...|++|.+| +++++.+.+.+.|. ...++.++ ++++|+|++++|.
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilavk~ 96 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCVKS 96 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECCCG
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEccc
Confidence 689999999999999999999999999999 88877777766442 22345554 5889999999987
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe------CccCCCCc--cccCCceEEEecC
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE------APVSGSKK--PAEDGQLIFLAAG 209 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~------~p~~~~~~--~~~~~~~~~~~~~ 209 (290)
. .++.++ +++.+.+++++++|++..|-.. .+.+.+.+. . .++. +...++-. ....+.+ ..+.
T Consensus 97 ~-~~~~~l---~~l~~~l~~~~~iv~~~nGi~~-~~~l~~~~~-~--~vl~g~~~~~a~~~gP~~~~~~~~g~~--~ig~ 166 (318)
T 3hwr_A 97 T-DTQSAA---LAMKPALAKSALVLSLQNGVEN-ADTLRSLLE-Q--EVAAAVVYVATEMAGPGHVRHHGRGEL--VIEP 166 (318)
T ss_dssp G-GHHHHH---HHHTTTSCTTCEEEEECSSSSH-HHHHHHHCC-S--EEEEEEEEEEEEEEETTEEEEEEEEEE--EECC
T ss_pred c-cHHHHH---HHHHHhcCCCCEEEEeCCCCCc-HHHHHHHcC-C--cEEEEEEEEeEEEcCCeEEEEcCCceE--EEcC
Confidence 4 778877 4567788899999988666543 245555553 1 1211 11111110 1112222 2333
Q ss_pred CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHH---------------------HHH-HHHHHHHHHHHHCCCC
Q 022909 210 DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM---------------------GRS-CTFSYSFLTLEFVDFL 267 (290)
Q Consensus 210 ~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~---------------------~~~-~~~~ea~~l~~~~G~~ 267 (290)
.+..+.+.++|+..|.+++...+.....|.|++.|... .++ ..+.|+..++++.|++
T Consensus 167 -~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G~~ 245 (318)
T 3hwr_A 167 -TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEGVK 245 (318)
T ss_dssp -CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred -CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcCCC
Confidence 34457899999999999988889888999998877532 224 6778999999999976
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=124.79 Aligned_cols=100 Identities=13% Similarity=0.063 Sum_probs=84.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|+|+|+|.||+.+|+.++.+|++|+++|+++.+.......|.... +++++++++|+|+++. .+++++ +++
T Consensus 211 GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~-sL~eal~~ADVVilt~----gt~~iI--~~e 283 (436)
T 3h9u_A 211 GKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVL-LVEDVVEEAHIFVTTT----GNDDII--TSE 283 (436)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECS----SCSCSB--CTT
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeec-CHHHHHhhCCEEEECC----CCcCcc--CHH
Confidence 899999999999999999999999999999999876655556676654 8999999999999743 345667 667
Q ss_pred ccccCCCCCEEEEecCCCh-hHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVDG-DTSKLING 177 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~-~~~~~l~~ 177 (290)
.++.||+++++||++|+.+ ++.++|.+
T Consensus 284 ~l~~MK~gAIVINvgRg~vEID~~~L~~ 311 (436)
T 3h9u_A 284 HFPRMRDDAIVCNIGHFDTEIQVAWLKA 311 (436)
T ss_dssp TGGGCCTTEEEEECSSSGGGBCHHHHHH
T ss_pred HHhhcCCCcEEEEeCCCCCccCHHHHHh
Confidence 8999999999999999986 66666654
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-13 Score=125.59 Aligned_cols=100 Identities=18% Similarity=0.086 Sum_probs=84.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|+|+|+|.||+.+|++++.+|++|+++++++.+.......|.... +++++++++|+|+++.+ +++++ +++
T Consensus 247 GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv-~LeElL~~ADIVv~atg----t~~lI--~~e 319 (464)
T 3n58_A 247 GKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVV-TLDDAASTADIVVTTTG----NKDVI--TID 319 (464)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEEC-CHHHHGGGCSEEEECCS----SSSSB--CHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceec-cHHHHHhhCCEEEECCC----Ccccc--CHH
Confidence 899999999999999999999999999999998865544445666654 89999999999998743 35677 677
Q ss_pred ccccCCCCCEEEEecCCCh-hHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVDG-DTSKLING 177 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~-~~~~~l~~ 177 (290)
.++.||+++++||++|+.. ++.++|.+
T Consensus 320 ~l~~MK~GAILINvGRgdvEID~~aL~~ 347 (464)
T 3n58_A 320 HMRKMKDMCIVGNIGHFDNEIQVAALRN 347 (464)
T ss_dssp HHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred HHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence 8999999999999999987 67666653
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=6e-13 Score=119.99 Aligned_cols=196 Identities=10% Similarity=-0.015 Sum_probs=133.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--------eEEEEeCCccch-----hhHHhC--------------CCccCCCHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--------DVTVWNRTKSKC-----DPLISL--------------GAKYQPSPDE 123 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--------~V~~~d~~~~~~-----~~~~~~--------------g~~~~~~~~~ 123 (290)
+.||+|||.|.+|.++|..|...|+ +|.+|.|+++.. +.+... ++..++++++
T Consensus 34 p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~ 113 (391)
T 4fgw_A 34 PFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLID 113 (391)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHH
Confidence 5699999999999999999998764 599999986531 112211 2345678999
Q ss_pred HhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChh-------HHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 124 VAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-------TSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 124 ~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~-------~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
+++++|+|++++|. +.++.++ +++.+.++++..+|+++-|--. ..+.+.+.+. ..+.++..|.+..+.
T Consensus 114 al~~ad~ii~avPs-~~~r~~l---~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~-~~~~vLsGPs~A~EV 188 (391)
T 4fgw_A 114 SVKDVDIIVFNIPH-QFLPRIC---SQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELG-IQCGALSGANIATEV 188 (391)
T ss_dssp HHTTCSEEEECSCG-GGHHHHH---HHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHC-CEEEEEECSCCHHHH
T ss_pred HHhcCCEEEEECCh-hhhHHHH---HHhccccCCCceeEEeccccccccccchhHHHHHHHHhC-ccceeccCCchHHHh
Confidence 99999999999986 7788887 4567788899999999755321 2233333332 234567788887666
Q ss_pred cccCCceEEEecCCH---------HHHHHHHHHHHHhCCcEEEeCCc-----------------chHHHHHHHHHHHHHH
Q 022909 197 PAEDGQLIFLAAGDK---------SLYNTVAPLLDIMGKSRFYLGDV-----------------GNGAAMKLVVNMIMGR 250 (290)
Q Consensus 197 ~~~~~~~~~~~~~~~---------~~~~~v~~ll~~~G~~~~~~~~~-----------------g~a~~~k~~~n~~~~~ 250 (290)
.......+.+.+.++ ...+.++++|+.--++++...|. |....+++..|...++
T Consensus 189 a~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakAAL 268 (391)
T 4fgw_A 189 AQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAI 268 (391)
T ss_dssp HTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 555555444544322 12456788887777778777662 2222233445888888
Q ss_pred H-HHHHHHHHHHHHC---CCCHHHH
Q 022909 251 S-CTFSYSFLTLEFV---DFLINTV 271 (290)
Q Consensus 251 ~-~~~~ea~~l~~~~---G~~~~~~ 271 (290)
+ .+++|..+++... |-++.++
T Consensus 269 itrGl~Em~rlg~al~~~g~~~tt~ 293 (391)
T 4fgw_A 269 QRVGLGEIIRFGQMFFPESREETYY 293 (391)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCceee
Confidence 8 9999999999887 4444444
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-12 Score=123.91 Aligned_cols=190 Identities=16% Similarity=0.184 Sum_probs=131.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC----------------------CCccCCCHHHHhhcC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----------------------GAKYQPSPDEVAASC 128 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~----------------------g~~~~~~~~~~~~~a 128 (290)
-++|+|||+|.||..||..++..|++|+++|++++..+...+. .+...++.++ +++|
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~a 394 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-LSTV 394 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-GGSC
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-HhhC
Confidence 4799999999999999999999999999999998754432210 1223445544 7899
Q ss_pred CeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEec
Q 022909 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA 208 (290)
Q Consensus 129 Divv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 208 (290)
|+||.++|.+.+++.-++ +++-+.+++++++-..+++-+++ ++.+.+... -+++....|.++.. -+++-++.
T Consensus 395 DlVIEAV~E~l~iK~~vf--~~le~~~~~~aIlASNTSsl~i~--~ia~~~~~p-~r~ig~HFfnP~~~---m~LVEvi~ 466 (742)
T 3zwc_A 395 DLVVEAVFEDMNLKKKVF--AELSALCKPGAFLCTNTSALNVD--DIASSTDRP-QLVIGTHFFSPAHV---MRLLEVIP 466 (742)
T ss_dssp SEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH--HHHTTSSCG-GGEEEEECCSSTTT---CCEEEEEE
T ss_pred CEEEEeccccHHHHHHHH--HHHhhcCCCCceEEecCCcCChH--HHHhhcCCc-cccccccccCCCCC---CceEEEec
Confidence 999999999999987773 45566789999886544443333 455544322 34555444443332 23333333
Q ss_pred ---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhh
Q 022909 209 ---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQS 277 (290)
Q Consensus 209 ---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~ 277 (290)
.+++.++.+.++.+.+|+.++.+.+.. +. +.|-+ +...+.|++.+.++ |.+++++++++..
T Consensus 467 g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~p-GF----i~NRi--~~~~~~ea~~l~~e-G~~~~~id~a~~~ 530 (742)
T 3zwc_A 467 SRYSSPTTIATVMSLSKKIGKIGVVVGNCY-GF----VGNRM--LAPYYNQGFFLLEE-GSKPEDVDGVLEE 530 (742)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEECCCST-TT----THHHH--HHHHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccCCCC-Cc----cHHHH--hhHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 467999999999999999999887632 22 22211 11556888877766 7999999999875
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=118.52 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=78.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|+|+|+|.||+.+|+.++.+|++|+++|+++.+.......|... .+++++++++|+|+++ +. +++++ +++
T Consensus 220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~a-tg---t~~lI--~~e 292 (435)
T 3gvp_A 220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITC-TG---NKNVV--TRE 292 (435)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEEC-SS---CSCSB--CHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEEC-CC---CcccC--CHH
Confidence 89999999999999999999999999999999986655555566654 4899999999999995 33 45677 567
Q ss_pred ccccCCCCCEEEEecCCChh
Q 022909 151 AASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~ 170 (290)
.++.||+++++||++++.+.
T Consensus 293 ~l~~MK~gailINvgrg~~E 312 (435)
T 3gvp_A 293 HLDRMKNSCIVCNMGHSNTE 312 (435)
T ss_dssp HHHHSCTTEEEEECSSTTTT
T ss_pred HHHhcCCCcEEEEecCCCcc
Confidence 78999999999999999873
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-12 Score=114.03 Aligned_cols=195 Identities=13% Similarity=0.036 Sum_probs=126.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc---cCCCHHHHh-hcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK---YQPSPDEVA-ASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~---~~~~~~~~~-~~aDivv~~~p~~~~~~~~~~ 146 (290)
.|+|+|||+|.||..++..|...|++|.+|+|+++..+.....|.. ...+..+.+ +.+|+|++++|. ..++.++
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~-~~~~~~l- 79 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKT-HQLDAVI- 79 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCG-GGHHHHG-
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCc-cCHHHHH-
Confidence 5899999999999999999999999999999997654432223321 112333444 789999999965 6778877
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCC----cEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA----SFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 222 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~ 222 (290)
+++.+.+++++++|.+..|-...+. +....+ .+..+-..+ +.....++..+.. ++.+..+.+.++|+
T Consensus 80 --~~l~~~l~~~~~iv~~~nGi~~~~~-----~~~~~v~~g~~~~~a~~~~-pg~v~~~~~~~~~-~~~~~~~~l~~~l~ 150 (294)
T 3g17_A 80 --PHLTYLAHEDTLIILAQNGYGQLEH-----IPFKNVCQAVVYISGQKKG-DVVTHFRDYQLRI-QDNALTRQFRDLVQ 150 (294)
T ss_dssp --GGHHHHEEEEEEEEECCSSCCCGGG-----CCCSCEEECEEEEEEEEET-TEEEEEEEEEEEE-ECSHHHHHHHHHTT
T ss_pred --HHHHHhhCCCCEEEEeccCcccHhh-----CCCCcEEEEEEEEEEEEcC-CCEEEECCCEEec-CccHHHHHHHHHHH
Confidence 4556667788889988776544332 222111 111110111 1111111111222 34566688889999
Q ss_pred HhCCcEEEeCCcchHHHHHHHHHHHH--------------------HHH-HHHHHHHHHHHHCCCC--HHHHHHHHh
Q 022909 223 IMGKSRFYLGDVGNGAAMKLVVNMIM--------------------GRS-CTFSYSFLTLEFVDFL--INTVTMFLQ 276 (290)
Q Consensus 223 ~~G~~~~~~~~~g~a~~~k~~~n~~~--------------------~~~-~~~~ea~~l~~~~G~~--~~~~~~~i~ 276 (290)
.-|.+++...+.....|.|++-|... .++ ..+.|+..++++.|++ .+.+.+.+.
T Consensus 151 ~~~~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~ 227 (294)
T 3g17_A 151 DSQIDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMT 227 (294)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCCceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88998988899988999898877632 123 5778999999999965 454555554
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=9.3e-13 Score=119.24 Aligned_cols=93 Identities=20% Similarity=0.276 Sum_probs=75.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCcc------CCCHHHHhhcCCeEEEEeCChh-HHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY------QPSPDEVAASCDVTFAMLADPE-SAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~------~~~~~~~~~~aDivv~~~p~~~-~~~ 142 (290)
+++|+|+|+|.||+.+++.++.+|++|+++|+++++.+.+.+ .|... ..+++++++++|+|+.+++.+. .+.
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~t~ 247 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAP 247 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCCCc
Confidence 799999999999999999999999999999999887766655 44431 2356788889999999875433 455
Q ss_pred HHhcccccccccCCCCCEEEEec
Q 022909 143 DVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s 165 (290)
.++ .++.++.|+++.++||++
T Consensus 248 ~li--~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 248 KLV--SNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CCB--CHHHHTTSCTTCEEEEGG
T ss_pred cee--cHHHHhcCCCCcEEEEEe
Confidence 555 456678899999999998
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.6e-12 Score=110.42 Aligned_cols=110 Identities=16% Similarity=0.271 Sum_probs=89.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CC-eEEEEeCCccchhhHHhC-C--CccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GC-DVTVWNRTKSKCDPLISL-G--AKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~-~V~~~d~~~~~~~~~~~~-g--~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
.++|+|||+|.||+.+++.|... |+ +|.+|||++++.+.+.+. + +..+++++++++++|+|++++|.. +.++
T Consensus 135 ~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~v~ 211 (312)
T 2i99_A 135 SEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EPIL 211 (312)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SCCB
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---Cccc
Confidence 58999999999999999999765 76 899999999888877663 5 667789999999999999999852 3444
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeC
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~ 189 (290)
.. +.+++|++++++++..+.. .++.+.+.+++..|++.
T Consensus 212 --~~---~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~~~vD~ 249 (312)
T 2i99_A 212 --FG---EWVKPGAHINAVGASRPDW-RELDDELMKEAVLYVDS 249 (312)
T ss_dssp --CG---GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSEEEESC
T ss_pred --CH---HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCEEEECC
Confidence 11 5789999999998777754 66777777778889983
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=112.73 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=84.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|+|+|+|.||+.+++.++.+|++|+++|+++.+.+...+.|+.. .+++++++++|+|+.+++.. +++ +.+
T Consensus 274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atgt~----~~i--~~~ 346 (494)
T 3ce6_A 274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATGNK----DII--MLE 346 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSSSS----CSB--CHH
T ss_pred cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCCCH----HHH--HHH
Confidence 89999999999999999999999999999999998777666777764 47889999999999998643 344 335
Q ss_pred ccccCCCCCEEEEecCCCh-hHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVDG-DTSKLING 177 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~-~~~~~l~~ 177 (290)
.++.|+++++++|++++.. ++..++..
T Consensus 347 ~l~~mk~ggilvnvG~~~~eId~~aL~~ 374 (494)
T 3ce6_A 347 HIKAMKDHAILGNIGHFDNEIDMAGLER 374 (494)
T ss_dssp HHHHSCTTCEEEECSSSGGGBCHHHHHH
T ss_pred HHHhcCCCcEEEEeCCCCCccCHHHHHH
Confidence 6788999999999999887 66666655
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.4e-11 Score=103.07 Aligned_cols=109 Identities=24% Similarity=0.273 Sum_probs=83.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhH--HHHHhcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPES--AMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~--~~~~~~~ 147 (290)
+++|+|||+|.||+++++.|...|++|.+++|++++.+.+.+ .++...++++++++++|+|++++|.... +...+
T Consensus 129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i-- 206 (275)
T 2hk9_A 129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIF-- 206 (275)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSS--
T ss_pred CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCC--
Confidence 689999999999999999999999999999999887766654 3555555788889999999999997542 11222
Q ss_pred cccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+ .+.++++.+++|++. . ...+.+..++.++.+++
T Consensus 207 ~---~~~l~~g~~viDv~~---~-~t~ll~~a~~~g~~~v~ 240 (275)
T 2hk9_A 207 N---YDLIKKDHVVVDIIY---K-ETKLLKKAKEKGAKLLD 240 (275)
T ss_dssp C---GGGCCTTSEEEESSS---S-CCHHHHHHHHTTCEEEC
T ss_pred C---HHHcCCCCEEEEcCC---C-hHHHHHHHHHCcCEEEC
Confidence 1 356889999999987 2 22455566666766654
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=99.82 Aligned_cols=108 Identities=20% Similarity=0.155 Sum_probs=83.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhH--HHHHhcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPES--AMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~--~~~~~~~ 147 (290)
+ +|+|||+|.||+++++.|...|++|.++||++++.+.+.+ .+.. .++++++ +++|+|++++|.+.. +...+
T Consensus 117 ~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l-- 191 (263)
T 2d5c_A 117 G-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASPL-- 191 (263)
T ss_dssp S-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCSS--
T ss_pred C-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCCC--
Confidence 7 9999999999999999999999999999999877666654 3444 4578888 999999999997631 21222
Q ss_pred cccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
. .+.++++++++|++.... .+ .+.+.+++.++.+++
T Consensus 192 ~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g~~~v~ 227 (263)
T 2d5c_A 192 P---AELFPEEGAAVDLVYRPL-WT-RFLREAKAKGLKVQT 227 (263)
T ss_dssp C---GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTTCEEEC
T ss_pred C---HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCcCEEEC
Confidence 1 456889999999987643 33 477777777776664
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-11 Score=107.64 Aligned_cols=167 Identities=17% Similarity=0.132 Sum_probs=103.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCC----------HHHHhhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS----------PDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~----------~~~~~~~aDivv~~~p~~~~ 140 (290)
.|||+|||+|.||..++..|. .|++|.+++|++++.+.+++.|+....+ .++..+.+|+|++++|. ..
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~-~~ 79 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQ-HQ 79 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCG-GG
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCH-HH
Confidence 589999999999999999999 9999999999987777777655533211 12456789999999965 66
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeC-ccCC----CCc---cccCCceEEEe-cCCH
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSG----SKK---PAEDGQLIFLA-AGDK 211 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~-p~~~----~~~---~~~~~~~~~~~-~~~~ 211 (290)
+..++ +.+. .+.+++ +|.+..|-.. .+.+.+.+... +++.+ ...+ ++. ....+.+.+-. .+..
T Consensus 80 ~~~~l---~~l~-~~~~~~-ivs~~nGi~~-~e~l~~~~~~~--~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~ 151 (307)
T 3ego_A 80 LQSVF---SSLE-RIGKTN-ILFLQNGMGH-IHDLKDWHVGH--SIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDDAE 151 (307)
T ss_dssp HHHHH---HHTT-SSCCCE-EEECCSSSHH-HHHHHTCCCSC--EEEEEEECCEEEECSSSEEEEEECCCEEEEECTTCC
T ss_pred HHHHH---HHhh-cCCCCe-EEEecCCccH-HHHHHHhCCCC--cEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCCCc
Confidence 77776 2233 345666 7777665543 23333333221 22221 1110 110 01223332211 1223
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHH
Q 022909 212 SLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMI 247 (290)
Q Consensus 212 ~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~ 247 (290)
+..+.+.+.|+..|..+....+.....|.|++.|..
T Consensus 152 ~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~ 187 (307)
T 3ego_A 152 PDRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNAC 187 (307)
T ss_dssp GGGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhh
Confidence 334455556666677787888899999999988764
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.8e-11 Score=105.60 Aligned_cols=93 Identities=23% Similarity=0.385 Sum_probs=76.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCC-------------------------CHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP-------------------------SPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~-------------------------~~~~~~ 125 (290)
+.+|+|||+|.||...++.+..+|.+|+++|+++++.+.+.+.|..+.+ ++++++
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l 263 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAI 263 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHH
Confidence 6899999999999999999999999999999999988887776665432 467888
Q ss_pred hcCCeEEEEeCCh-hHHHHHhcccccccccCCCCCEEEEec
Q 022909 126 ASCDVTFAMLADP-ESAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 126 ~~aDivv~~~p~~-~~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
+++|+||.++..+ .....++ .++.++.|++|++|||++
T Consensus 264 ~~aDIVI~tv~iPg~~ap~Lv--t~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 264 TKFDIVITTALVPGRPAPRLV--TAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp TTCSEEEECCCCTTSCCCCCB--CHHHHHTSCTTCEEEETT
T ss_pred hcCCEEEECCCCCCcccceee--cHHHHhcCCCCcEEEEEe
Confidence 9999999886322 2234455 567789999999999997
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-10 Score=95.26 Aligned_cols=110 Identities=17% Similarity=0.247 Sum_probs=83.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeE-EEEeCCccchhhHHhCCCccCCCHHHHh-hcCCeEEEEeCChhHHHHHhcccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+||||||+|.||+.+++.+...|+++ .+||+++ +.+. .++++++++ .++|+|++++|.... ...+
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~-~~~~---- 67 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQAV-KDYA---- 67 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHHH-HHHH----
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHHH-HHHH----
Confidence 47999999999999999999889987 6999885 3221 456899998 689999999986533 3333
Q ss_pred cccccCCCCCEEEEecCCChhHH---HHHHHHHHHcCCc-EEeCccCCCCc
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTS---KLINGHIKATGAS-FLEAPVSGSKK 196 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~---~~l~~~l~~~~~~-~~~~p~~~~~~ 196 (290)
...++.|..+|+.+.+..... +++.+..++.+.. +++.++.++..
T Consensus 68 --~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~ 116 (236)
T 2dc1_A 68 --EKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLD 116 (236)
T ss_dssp --HHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHH
T ss_pred --HHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChH
Confidence 345678999998887665444 6788888777777 56777776543
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.1e-10 Score=87.22 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=81.9
Q ss_pred CCeEEEEcc----cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~----G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.++|+|||+ |+||..+++.|.+.|++|+.++++.+.. .|...+.+++|+.+..|++++++| ++....++
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~- 86 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA- 86 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH-
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHH-
Confidence 689999999 9999999999999999977777664322 467778899999889999999999 57777777
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+ ...+.++++.++. .+++.+.+++.|+++++
T Consensus 87 --~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~ig 121 (138)
T 1y81_A 87 --KEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAGVEYSF 121 (138)
T ss_dssp --HHHHH-TTCCEEEECTTSC----CHHHHHHHHHHTCEEEC
T ss_pred --HHHHH-cCCCEEEEcCccH----HHHHHHHHHHCCCEEEc
Confidence 23333 4456666666442 57888888889999987
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=90.56 Aligned_cols=88 Identities=17% Similarity=0.276 Sum_probs=71.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCc--cCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAK--YQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~--~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
+++|+|||+|.||+.+++.|...|++|.+++|++++.+.+.+ .+.. ..++++++++++|+|+.++|.+. .++
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~---~~~-- 95 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKT---PIV-- 95 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSS---CSB--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCC---cEe--
Confidence 689999999999999999999999999999999988776554 3433 45688899999999999998752 223
Q ss_pred cccccccCCCCCEEEEecC
Q 022909 148 KHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~ 166 (290)
. .+.++++.+++|++.
T Consensus 96 ~---~~~l~~g~~vid~~~ 111 (144)
T 3oj0_A 96 E---ERSLMPGKLFIDLGN 111 (144)
T ss_dssp C---GGGCCTTCEEEECCS
T ss_pred e---HHHcCCCCEEEEccC
Confidence 1 256788999999875
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-10 Score=103.97 Aligned_cols=93 Identities=23% Similarity=0.294 Sum_probs=75.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-----------------------------CCH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----------------------------PSP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-----------------------------~~~ 121 (290)
+.+|+|||+|.+|...++.+..+|.+|+++|+++.+.+.+.+.|..+. .++
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l 269 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALV 269 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHH
Confidence 689999999999999999999999999999999988777776665422 146
Q ss_pred HHHhhcCCeEEEEeCChh-HHHHHhcccccccccCCCCCEEEEec
Q 022909 122 DEVAASCDVTFAMLADPE-SAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~~~-~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
+++++++|+||.++..+. ....++ .++.++.||+|++|||++
T Consensus 270 ~e~l~~aDVVI~tvlipg~~ap~Lv--t~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 270 AEHIAKQDIVITTALIPGRPAPRLV--TREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHTCSEEEECCCCSSSCCCCCB--CHHHHTTSCTTCEEEETT
T ss_pred HHHhcCCCEEEECCcCCCCCCCEEe--cHHHHhcCCCCCEEEEEe
Confidence 778899999998853221 234555 567789999999999997
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.9e-10 Score=102.68 Aligned_cols=97 Identities=16% Similarity=0.248 Sum_probs=76.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCC---------------------------CHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP---------------------------SPDE 123 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~---------------------------~~~~ 123 (290)
+.+|+|+|+|.+|...++.+..+|++|+++|+++++.+.+.+.|...+. ++++
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e 251 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAA 251 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999887777666665442 2667
Q ss_pred HhhcCCeEEEE--eCChhHHHHHhcccccccccCCCCCEEEEec--CCChh
Q 022909 124 VAASCDVTFAM--LADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDGD 170 (290)
Q Consensus 124 ~~~~aDivv~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s--~~~~~ 170 (290)
+++++|+||.+ +|.. .+..++ .++.++.|+++.+|||++ ++..+
T Consensus 252 ~~~~aDvVI~~~~~pg~-~ap~li--~~~~l~~mk~g~vIVdva~~~Gg~v 299 (401)
T 1x13_A 252 QAKEVDIIVTTALIPGK-PAPKLI--TREMVDSMKAGSVIVDLAAQNGGNC 299 (401)
T ss_dssp HHHHCSEEEECCCCTTS-CCCCCB--CHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred HhCCCCEEEECCccCCC-CCCeee--CHHHHhcCCCCcEEEEEcCCCCCCc
Confidence 78899999999 4431 233444 345678899999999998 54433
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=8.8e-10 Score=98.13 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=83.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhh-cCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|+|+|+||+.+|+.+..+|++|+++|+++++.+...+.+.... +.++++. +||+++.| .+.+.+ ++
T Consensus 175 GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~-----A~~~~I--~~ 246 (355)
T 1c1d_A 175 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPC-----AMGGVI--TT 246 (355)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEEC-----SCSCCB--CH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHh-----HHHhhc--CH
Confidence 899999999999999999999999999999998765222334566655 6778887 89999743 345566 45
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
+.++.|+ ..+|+|.++++..++++ .+.|+++++.++
T Consensus 247 ~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIlv~ 282 (355)
T 1c1d_A 247 EVARTLD-CSVVAGAANNVIADEAA-SDILHARGILYA 282 (355)
T ss_dssp HHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCEEC
T ss_pred HHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEEEE
Confidence 5566776 68999999998877556 588888887664
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3e-09 Score=93.95 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=70.7
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHH----h--------CCCccCCCHHHHhhcCCeEEEEeC
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S--------LGAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~----~--------~g~~~~~~~~~~~~~aDivv~~~p 136 (290)
+.+||+|||+|.||..+|..|+..|+ +|.+||+++++.+... . ..+..+++. +.++++|+|+++++
T Consensus 3 ~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg 81 (317)
T 2ewd_A 3 ERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITAS 81 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence 36899999999999999999999998 9999999987655421 0 122333566 67899999999993
Q ss_pred --------------ChhH-HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHH
Q 022909 137 --------------DPES-AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING 177 (290)
Q Consensus 137 --------------~~~~-~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~ 177 (290)
.+.. .+.++ +++.+. .+++++|+.|.........+.+
T Consensus 82 ~p~~~g~~r~d~~~~~~~i~~~i~---~~i~~~-~~~~iii~~sNp~~~~~~~~~~ 133 (317)
T 2ewd_A 82 IPGRPKDDRSELLFGNARILDSVA---EGVKKY-CPNAFVICITNPLDVMVSHFQK 133 (317)
T ss_dssp CSSCCSSCGGGGHHHHHHHHHHHH---HHHHHH-CTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHhhHHHHHHHH---HHHHHH-CCCcEEEEeCChHHHHHHHHHH
Confidence 2222 23333 223333 4689999987754444444444
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.4e-09 Score=91.80 Aligned_cols=111 Identities=13% Similarity=0.110 Sum_probs=83.2
Q ss_pred CCeEEEEcccHhHHH-HHHHHHH-CCCeEE-EEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLK-AGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~-~g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.+||||||+|.||+. +++.+.. .+.++. ++|+++++.+.+++ .|+..++++++++++.|+|++++|.......+.
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~- 84 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEIIK- 84 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHHH-
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHH-
Confidence 589999999999996 8888876 467766 89999988777665 577668899999999999999999866554433
Q ss_pred ccccccccCCCCCEEEE--ecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 147 GKHGAASGMGPGKGYVD--VSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin--~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
..++.|..++- -......+.+++.+..++.++.+.-
T Consensus 85 ------~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v 122 (308)
T 3uuw_A 85 ------ILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLMV 122 (308)
T ss_dssp ------HHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEE
T ss_pred ------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 23445555442 1345667778888888887766543
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=97.72 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=70.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCCeEEEEe---CCccchhhH-HhCC------------------C-ccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGCDVTVWN---RTKSKCDPL-ISLG------------------A-KYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~~V~~~d---~~~~~~~~~-~~~g------------------~-~~~~~~~~~~~ 126 (290)
.|+|+|||+|.||..+|..|+. .|++|.+|+ |++++.+.+ ++.+ + ..+++++++++
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 81 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS 81 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence 4799999999999999999987 599999999 766665552 3222 1 14457888889
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEec
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
++|+|++++|.. ..+.++ +++.+.++++++|++..
T Consensus 82 ~aD~Vilav~~~-~~~~v~---~~l~~~l~~~~ivv~~~ 116 (404)
T 3c7a_A 82 GADVVILTVPAF-AHEGYF---QAMAPYVQDSALIVGLP 116 (404)
T ss_dssp TCSEEEECSCGG-GHHHHH---HHHTTTCCTTCEEEETT
T ss_pred CCCEEEEeCchH-HHHHHH---HHHHhhCCCCcEEEEcC
Confidence 999999999874 466776 45667788899988853
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-09 Score=85.15 Aligned_cols=104 Identities=17% Similarity=0.214 Sum_probs=79.8
Q ss_pred CCeEEEEcc----cHhHHHHHHHHHHCCCeEEEEeCCc--cchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTK--SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~----G~iG~~la~~l~~~g~~V~~~d~~~--~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
.++|+|||+ |++|..+++.|...|++|+.+|++. +.. .|...+.+++|+.+..|++++++|. +.+..+
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp~-~~v~~v 86 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRNS-EAAWGV 86 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSCS-THHHHH
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHH
Confidence 478999999 8999999999999999977777654 322 4677777888888889999999995 777777
Q ss_pred hcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+ ++..+ ...+.++++.++. .+++.+.+++.|++++.
T Consensus 87 ~---~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 87 A---QEAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVM 122 (145)
T ss_dssp H---HHHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEEC
T ss_pred H---HHHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEc
Confidence 7 22333 3455666665332 67888888889999985
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3e-09 Score=96.40 Aligned_cols=93 Identities=19% Similarity=0.288 Sum_probs=73.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC--CC---------------------------H
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PS---------------------------P 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~---------------------------~ 121 (290)
+++|+|+|+|.+|..+++.++.+|++|+++|+++++.+.+.+.|.... +. +
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l 251 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAV 251 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHH
Confidence 799999999999999999999999999999999988777766665443 11 6
Q ss_pred HHHhhcCCeEEEEeCChh-HHHHHhcccccccccCCCCCEEEEec
Q 022909 122 DEVAASCDVTFAMLADPE-SAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~~~-~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
+++++++|+||.+++.+. ....++ .++.++.|+++.++||++
T Consensus 252 ~~~~~~aDvVi~~~~~pg~~~~~li--~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 252 LKELVKTDIAITTALIPGKPAPVLI--TEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp HHHHTTCSEEEECCCCTTSCCCCCS--CHHHHTTSCTTCEEEETT
T ss_pred HHHhCCCCEEEECCccCCCCCCeee--CHHHHhcCCCCCEEEEEe
Confidence 677889999998883221 122344 345578899999999998
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-09 Score=97.33 Aligned_cols=94 Identities=23% Similarity=0.319 Sum_probs=71.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCcc------CCCHHHHhhcCCeEEEEeCChh-HHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY------QPSPDEVAASCDVTFAMLADPE-SAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~------~~~~~~~~~~aDivv~~~p~~~-~~~ 142 (290)
+++|+|+|+|.||+.+++.++.+|++|+++|+++++.+.+.+ .+... ..+++++++++|+|+.+++.+. .+.
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~ 245 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAP 245 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccc
Confidence 799999999999999999999999999999999887766654 44321 2346677889999999998654 455
Q ss_pred HHhcccccccccCCCCCEEEEecC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++ .++.++.|+++.++||++.
T Consensus 246 ~li--~~~~l~~mk~gg~iV~v~~ 267 (369)
T 2eez_A 246 KLV--TRDMLSLMKEGAVIVDVAV 267 (369)
T ss_dssp CCS--CHHHHTTSCTTCEEEECC-
T ss_pred hhH--HHHHHHhhcCCCEEEEEec
Confidence 555 4556788999999999974
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.9e-10 Score=99.19 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=83.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CC-CeEEEEeCCccchhhHHhC-----C--CccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g-~~V~~~d~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.++|+|||+|.+|+.+++.+.. .+ .+|.+|||++++.+.+.+. | +..+++++++++++|+|++++|.+. .
T Consensus 129 ~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~-~ 207 (350)
T 1x7d_A 129 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA-Y 207 (350)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-E
T ss_pred CCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-C
Confidence 5799999999999999998754 44 5899999999888877653 5 3456789999999999999998752 2
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeC
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~ 189 (290)
..++ . .+++++|++++++++..+. ..++...+..++..|++.
T Consensus 208 ~pvl--~---~~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~ 249 (350)
T 1x7d_A 208 ATII--T---PDMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEY 249 (350)
T ss_dssp EEEE--C---GGGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESS
T ss_pred Ccee--c---HHHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECC
Confidence 2333 1 2578999999999876665 344445555555567764
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.3e-09 Score=78.44 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=70.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhCCCccC-------CCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
+++|+|+|+|.||+.+++.|...| ++|.+++|++++.+.+...++... .++.++++++|+|+.++|.. ...
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~-~~~ 83 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFF-LTP 83 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGG-GHH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCch-hhH
Confidence 689999999999999999999999 899999999887776664443211 23456677899999998753 334
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHH
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH 178 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~ 178 (290)
.++ ....+.+...++.+ +.+...+.+.+.
T Consensus 84 ~~~------~~~~~~g~~~~~~~-~~~~~~~~~~~~ 112 (118)
T 3ic5_A 84 IIA------KAAKAAGAHYFDLT-EDVAATNAVRAL 112 (118)
T ss_dssp HHH------HHHHHTTCEEECCC-SCHHHHHHHHHH
T ss_pred HHH------HHHHHhCCCEEEec-CcHHHHHHHHHH
Confidence 443 12234566777774 444445555443
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.3e-09 Score=92.38 Aligned_cols=112 Identities=19% Similarity=0.243 Sum_probs=83.8
Q ss_pred CCCCeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-CCCccCCCHHHHh--hcCCeEEEEeCChhHHHH
Q 022909 69 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVA--ASCDVTFAMLADPESAMD 143 (290)
Q Consensus 69 ~~~~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~--~~aDivv~~~p~~~~~~~ 143 (290)
++.+||||||+|.||+.+++.+... ++++. ++|+++++.+.+.+ .|+..++++++++ .+.|+|++++|...+...
T Consensus 3 ~~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~ 82 (354)
T 3db2_A 3 YNPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEV 82 (354)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHH
T ss_pred CCcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence 3457999999999999999999876 67754 88999988777654 5777788999999 468999999998666544
Q ss_pred HhcccccccccCCCCCEEEE-ec-CCChhHHHHHHHHHHHcCCcEE
Q 022909 144 VACGKHGAASGMGPGKGYVD-VS-TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin-~s-~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
+. ..++.|..++- -- .....+.+++.+..++.++.+.
T Consensus 83 ~~-------~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~ 121 (354)
T 3db2_A 83 IE-------QCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFL 121 (354)
T ss_dssp HH-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEE
T ss_pred HH-------HHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 43 33445654443 22 4556677888888888776554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.5e-08 Score=76.58 Aligned_cols=110 Identities=18% Similarity=0.254 Sum_probs=71.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCcc----CCCHHHH----hhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY----QPSPDEV----AASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~----~~~~~~~----~~~aDivv~~~p~~~~~ 141 (290)
+|+|+|+|+|.+|+.+++.|...|++|.++|+++++.+.+.+ .+... ..+.+.+ ++++|+|++++|.+...
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~ 83 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN 83 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence 589999999999999999999999999999999887766654 35432 1123222 56799999999875433
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCc
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p 190 (290)
..+. ...+.++++.+++..+.. ... +.+++.|+.++-+|
T Consensus 84 ~~~~----~~~~~~~~~~ii~~~~~~--~~~----~~l~~~g~~~v~~p 122 (140)
T 1lss_A 84 LMSS----LLAKSYGINKTIARISEI--EYK----DVFERLGVDVVVSP 122 (140)
T ss_dssp HHHH----HHHHHTTCCCEEEECSST--THH----HHHHHTTCSEEECH
T ss_pred HHHH----HHHHHcCCCEEEEEecCH--hHH----HHHHHcCCCEEECH
Confidence 3222 234446666666544322 222 24445565554443
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=90.74 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=83.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-CCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~ 145 (290)
++||||||+|.||+.+++.+... ++++. ++|+++++.+.+++ .++. +++++++++ +.|+|++++|.......+.
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 81 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLIE 81 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHH
Confidence 57999999999999999999885 67766 79999988777655 6777 789999998 7999999998866554443
Q ss_pred cccccccccCCCCCEEEE-e-cCCChhHHHHHHHHHHHcCCcEEe
Q 022909 146 CGKHGAASGMGPGKGYVD-V-STVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin-~-s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
..++.|..++- - ......+.+++.+..++.++.+.-
T Consensus 82 -------~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 119 (331)
T 4hkt_A 82 -------RFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMV 119 (331)
T ss_dssp -------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred -------HHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 23445554442 2 245566777888888888766543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-08 Score=81.74 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=75.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEEEEeCCccchhhHHhCCCccC----CCH---HHH--hhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQ----PSP---DEV--AASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~~----~~~---~~~--~~~aDivv~~~p~~~~ 140 (290)
+++|.|+|+|.+|+.+++.|... |++|.++|+++++.+.+.+.|.... .+. .++ ++++|+|++++|.+..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~ 118 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQG 118 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChHH
Confidence 67899999999999999999998 9999999999988887777665422 222 233 5678999999988666
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCc
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p 190 (290)
...++. ....+.+...+|..+. .... .+.+.+.|+.++..|
T Consensus 119 ~~~~~~----~~~~~~~~~~ii~~~~-~~~~----~~~l~~~G~~~vi~p 159 (183)
T 3c85_A 119 NQTALE----QLQRRNYKGQIAAIAE-YPDQ----LEGLLESGVDAAFNI 159 (183)
T ss_dssp HHHHHH----HHHHTTCCSEEEEEES-SHHH----HHHHHHHTCSEEEEH
T ss_pred HHHHHH----HHHHHCCCCEEEEEEC-CHHH----HHHHHHcCCCEEEch
Confidence 555541 2444555555554433 2222 234455566655443
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-08 Score=90.38 Aligned_cols=110 Identities=11% Similarity=0.094 Sum_probs=82.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--CCeEE-EEeCCccchhhHHh-CCCccCCCHHHHhh--cCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAA--SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~ 144 (290)
++||||||+|.||+.+++.+... ++++. ++|+++++.+.+.+ .|+..+++++++++ +.|+|++++|.......+
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 92 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHPTQS 92 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHHHHH
T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 47899999999999999999887 67755 89999988777655 57888889999997 789999999876554433
Q ss_pred hcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEE
Q 022909 145 ACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
. ..++.|..++.-- .....+.+++.+..++.+..+.
T Consensus 93 ~-------~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~ 130 (354)
T 3q2i_A 93 I-------ECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLF 130 (354)
T ss_dssp H-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred H-------HHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 3 2344565554321 3455667788888887776654
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=5.4e-09 Score=93.59 Aligned_cols=107 Identities=13% Similarity=0.184 Sum_probs=79.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCccCCCHHHHhh-cCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~-~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+++|+|+|+|+||+.+|+.|..+|++|+++|+++++.+++.+ .+.... +.++++. +||+++.|. +.+++ +
T Consensus 173 GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a-----~~~~I--~ 244 (364)
T 1leh_A 173 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCA-----LGAVL--N 244 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECS-----CSCCB--S
T ss_pred cCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccc-----hHHHh--C
Confidence 899999999999999999999999999999999887766555 366555 5566666 899998764 23344 3
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
.+.++.+ ...+|++.++++..+. +..+.|.++++.++
T Consensus 245 ~~~~~~l-g~~iV~e~An~p~t~~-ea~~~L~~~Gi~~~ 281 (364)
T 1leh_A 245 DFTIPQL-KAKVIAGSADNQLKDP-RHGKYLHELGIVYA 281 (364)
T ss_dssp TTHHHHC-CCSEECCSCSCCBSSH-HHHHHHHHHTCEEC
T ss_pred HHHHHhC-CCcEEEeCCCCCcccH-HHHHHHHhCCCEEe
Confidence 3345556 3467777777665443 46677888887664
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.4e-08 Score=76.42 Aligned_cols=108 Identities=14% Similarity=0.192 Sum_probs=73.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC----CCHHHH----hhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPDEV----AASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~----~~~aDivv~~~p~~~~~~ 142 (290)
..+|.|+|+|.+|+.+++.|...|++|+++|+++++.+.+.+.|+... .+.+.+ ++++|+|++++|.+....
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~ 86 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG 86 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence 578999999999999999999999999999999998888877666422 222222 357999999999876655
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
.+.. ....+.++..+|-..+ .. .-.+.+++.|+..+
T Consensus 87 ~~~~----~a~~~~~~~~iiar~~-~~----~~~~~l~~~G~d~v 122 (140)
T 3fwz_A 87 EIVA----SARAKNPDIEIIARAH-YD----DEVAYITERGANQV 122 (140)
T ss_dssp HHHH----HHHHHCSSSEEEEEES-SH----HHHHHHHHTTCSEE
T ss_pred HHHH----HHHHHCCCCeEEEEEC-CH----HHHHHHHHCCCCEE
Confidence 4441 2334445555553322 11 22345555566544
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-08 Score=89.63 Aligned_cols=133 Identities=16% Similarity=0.160 Sum_probs=93.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-CCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~ 145 (290)
+++|||||+|.||+.+++.+... ++++. ++|+++++.+.+.+ .|...+++++++++ +.|+|++++|.......+.
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 83 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLIT 83 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHH
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHHH
Confidence 57999999999999999999886 67765 89999988777655 57777889999998 7999999998866554443
Q ss_pred cccccccccCCCCCEE-EEec-CCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHH
Q 022909 146 CGKHGAASGMGPGKGY-VDVS-TVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI 223 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~l-in~s-~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~ 223 (290)
..++.|..+ +.-- .....+.+++.++.++.++.+.-..... -...+..++++++.
T Consensus 84 -------~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r----------------~~p~~~~~k~~i~~ 140 (344)
T 3euw_A 84 -------RAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGFNRR----------------FDPSFAAINARVAN 140 (344)
T ss_dssp -------HHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECCGGG----------------GCHHHHHHHHHHHT
T ss_pred -------HHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecchhh----------------cCHHHHHHHHHHhc
Confidence 223444433 3322 4456677788888887776554322211 11345677777765
Q ss_pred --hCC
Q 022909 224 --MGK 226 (290)
Q Consensus 224 --~G~ 226 (290)
+|.
T Consensus 141 g~iG~ 145 (344)
T 3euw_A 141 QEIGN 145 (344)
T ss_dssp TTTSS
T ss_pred CCCCc
Confidence 665
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.3e-09 Score=90.90 Aligned_cols=110 Identities=16% Similarity=0.081 Sum_probs=79.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCc--cCCCHHHHhhcCCeEEEEeCChh--HHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK--YQPSPDEVAASCDVTFAMLADPE--SAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~~aDivv~~~p~~~--~~~~~~ 145 (290)
++++.|+|+|.+|++++..|...|. +|++++|++++.+.+.+. +. ..+++.++++++|+||.++|... .....+
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~-~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l 195 (277)
T 3don_A 117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLN-INKINLSHAESHLDEFDIIINTTPAGMNGNTDSVI 195 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSC-CEEECHHHHHHTGGGCSEEEECCC-------CCSS
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHh-cccccHhhHHHHhcCCCEEEECccCCCCCCCcCCC
Confidence 7899999999999999999999998 899999999887665432 22 22345666789999999998642 111112
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
. .+.++++.+++|+...+.. + .+.+..++.|+..++
T Consensus 196 --~---~~~l~~~~~V~D~vY~P~~-T-~ll~~A~~~G~~~~~ 231 (277)
T 3don_A 196 --S---LNRLASHTLVSDIVYNPYK-T-PILIEAEQRGNPIYN 231 (277)
T ss_dssp --C---CTTCCSSCEEEESCCSSSS-C-HHHHHHHHTTCCEEC
T ss_pred --C---HHHcCCCCEEEEecCCCCC-C-HHHHHHHHCcCEEeC
Confidence 1 4567899999999877444 3 467777777776654
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=90.31 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=82.2
Q ss_pred CCeEEEEcccHhHH-HHHHHHHHC-CCeEE-EEeCCccchhhHHh-CCCccCCCHHHHhh--cCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGT-PMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAA--SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~-~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~ 144 (290)
.+||||||+|.||+ .+++.+... +++|. ++|+++++.+.+.+ .|+..+++++++++ +.|+|++++|.......+
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 106 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAEWI 106 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHHHH
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 47999999999998 789998876 67765 88999888777655 57877789999997 489999999886655443
Q ss_pred hcccccccccCCCCCEEE-Eec-CCChhHHHHHHHHHHHcCCcEE
Q 022909 145 ACGKHGAASGMGPGKGYV-DVS-TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~li-n~s-~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
. ..++.|+.++ .-- .....+.+++.++.++.++.+.
T Consensus 107 ~-------~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 144 (350)
T 3rc1_A 107 D-------RALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLM 144 (350)
T ss_dssp H-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred H-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 3 3345565544 221 4566777888888888876654
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.1e-08 Score=88.93 Aligned_cols=109 Identities=20% Similarity=0.162 Sum_probs=82.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~~ 146 (290)
..+|||||+|.||+..++.+... +.+|. ++|+++++.+..++.|+..+++++++++ +.|+|++++|.......+.
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~- 83 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELAI- 83 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHH-
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH-
Confidence 47899999999999999999876 66765 7899988876655678888899999998 6899999998766554433
Q ss_pred ccccccccCCCCCEEEEe--cCCChhHHHHHHHHHHHcCCcE
Q 022909 147 GKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~--s~~~~~~~~~l~~~l~~~~~~~ 186 (290)
..++.|+.++-- -.....+.+++.+..++.++.+
T Consensus 84 ------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~ 119 (359)
T 3e18_A 84 ------SALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHF 119 (359)
T ss_dssp ------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred ------HHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence 334566655432 1455667788888888877654
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.2e-09 Score=90.25 Aligned_cols=111 Identities=19% Similarity=0.132 Sum_probs=81.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh-CCC---ccC--CCHHHHhhcCCeEEEEeCChhHH--
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-LGA---KYQ--PSPDEVAASCDVTFAMLADPESA-- 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~-~g~---~~~--~~~~~~~~~aDivv~~~p~~~~~-- 141 (290)
+++++|||+|.+|++++..|...|. +|++++|++++.+.+.+ .+. ... +++.+.++++|+||.++|.....
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~ 220 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRV 220 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSCC
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCCC
Confidence 7899999999999999999999998 99999999988777665 222 111 24556678999999999875421
Q ss_pred HHH-hcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 142 MDV-ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 142 ~~~-~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
... + . .+.++++.+++|++.. |..+ .+.+..++.|+.+++
T Consensus 221 ~~~~i--~---~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~v~ 261 (297)
T 2egg_A 221 EVQPL--S---LERLRPGVIVSDIIYN-PLET-KWLKEAKARGARVQN 261 (297)
T ss_dssp SCCSS--C---CTTCCTTCEEEECCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred CCCCC--C---HHHcCCCCEEEEcCCC-CCCC-HHHHHHHHCcCEEEC
Confidence 111 1 1 3457899999999885 4333 367777777877664
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=94.15 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=74.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++++|+|+|.||+.+|+.|+.+|.+|+++|+++.+.......+... .+++++++.+|+|+.+... .+++ +.+
T Consensus 265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG~----~~vl--~~e 337 (488)
T 3ond_A 265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTGN----KDII--MLD 337 (488)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSSC----SCSB--CHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCCC----hhhh--hHH
Confidence 89999999999999999999999999999999987766666666654 4788999999999976533 2344 344
Q ss_pred ccccCCCCCEEEEecCCC
Q 022909 151 AASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~ 168 (290)
.++.|+++++++|+++..
T Consensus 338 ~l~~mk~gaiVvNaG~~~ 355 (488)
T 3ond_A 338 HMKKMKNNAIVCNIGHFD 355 (488)
T ss_dssp HHTTSCTTEEEEESSSTT
T ss_pred HHHhcCCCeEEEEcCCCC
Confidence 578899999999998864
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.3e-08 Score=89.10 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=81.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-CCC-ccCCCHHHHhh--cCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGA-KYQPSPDEVAA--SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~--~aDivv~~~p~~~~~~~~ 144 (290)
++||||||+|.||+.+++.+... +.++. ++|+++++.+.+.+ .++ ..+++++++++ +.|+|++++|.......+
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 81 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELV 81 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHH
Confidence 47999999999999999999875 56765 78999888776655 565 36789999998 799999999876554443
Q ss_pred hcccccccccCCCCCEEE-Eec-CCChhHHHHHHHHHHHcCCcEE
Q 022909 145 ACGKHGAASGMGPGKGYV-DVS-TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~li-n~s-~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
. ..++.|..++ .-- .....+.+++.++.++.++.+.
T Consensus 82 ~-------~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~ 119 (344)
T 3ezy_A 82 I-------ACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILF 119 (344)
T ss_dssp H-------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEE
T ss_pred H-------HHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 3 3345565444 322 4566677888888888776554
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.7e-08 Score=87.32 Aligned_cols=111 Identities=13% Similarity=0.184 Sum_probs=82.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-CCC-ccCCCHHHHhh--cCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGA-KYQPSPDEVAA--SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~--~aDivv~~~p~~~~~~~~ 144 (290)
.++|||||+|.||+.+++.+... +.+|. ++|+++++.+.+.+ .++ ..+++++++++ +.|+|++++|.......+
T Consensus 5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 84 (330)
T 3e9m_A 5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAA 84 (330)
T ss_dssp CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHH
T ss_pred eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHH
Confidence 47999999999999999999885 56765 78999888777655 566 46789999998 789999999986655443
Q ss_pred hcccccccccCCCCCE-EEEec-CCChhHHHHHHHHHHHcCCcEEe
Q 022909 145 ACGKHGAASGMGPGKG-YVDVS-TVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~-lin~s-~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
. ..++.|.. ++.-- .....+.+++.++.++.++.+..
T Consensus 85 ~-------~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v 123 (330)
T 3e9m_A 85 K-------LALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLME 123 (330)
T ss_dssp H-------HHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred H-------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 3 23444543 33322 44566777888888888776543
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.74 E-value=6e-08 Score=85.47 Aligned_cols=111 Identities=21% Similarity=0.273 Sum_probs=80.7
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHC-CCeEE-EEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.++|||||+|.||+. +++.+... ++++. ++|+++++.+.+.+ .|+..+++.+++..+.|+|++++|.......+.
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~- 83 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS- 83 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH-
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHHH-
Confidence 479999999999996 88888763 67765 99999988776655 467677788877668999999999765544332
Q ss_pred ccccccccCCCCCE-EEEe-cCCChhHHHHHHHHHHHcCCcEEe
Q 022909 147 GKHGAASGMGPGKG-YVDV-STVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 147 ~~~~~~~~~~~~~~-lin~-s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
..++.|.. ++.- ......+.+++.++.++.++.+..
T Consensus 84 ------~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~ 121 (319)
T 1tlt_A 84 ------TLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMV 121 (319)
T ss_dssp ------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred ------HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 33556664 4442 244566777888888887766543
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.7e-08 Score=85.57 Aligned_cols=111 Identities=11% Similarity=0.168 Sum_probs=80.1
Q ss_pred CeEEEEcccHhHHHH-HHHHHHCCCeEE-EEeCCccchhhHHh-CCCc-cCCCHHHHhh--cCCeEEEEeCChhHHHHHh
Q 022909 72 GRIGFLGMGIMGTPM-AQNLLKAGCDVT-VWNRTKSKCDPLIS-LGAK-YQPSPDEVAA--SCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 72 ~~IgiiG~G~iG~~l-a~~l~~~g~~V~-~~d~~~~~~~~~~~-~g~~-~~~~~~~~~~--~aDivv~~~p~~~~~~~~~ 145 (290)
++|||||+|.||+.+ ++.+...++++. ++|+++++.+.+.+ .++. .+++++++++ +.|+|++++|.......+.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 80 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTL 80 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHH
Confidence 479999999999998 878877778765 88999888766554 5663 6778999987 4999999998755443332
Q ss_pred cccccccccCCCCCEEEEe--cCCChhHHHHHHHHHHHcCCcEEeC
Q 022909 146 CGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFLEA 189 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~--s~~~~~~~~~l~~~l~~~~~~~~~~ 189 (290)
..++.|+.++.- ......+.+++.+..++.++.+...
T Consensus 81 -------~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~ 119 (332)
T 2glx_A 81 -------AAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTN 119 (332)
T ss_dssp -------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred -------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 335567654432 2345666778888888877766543
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.2e-09 Score=88.83 Aligned_cols=108 Identities=17% Similarity=0.098 Sum_probs=77.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC-CCccCCCHHHHhhcCCeEEEEeCChhHH-HHHhcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESA-MDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivv~~~p~~~~~-~~~~~~ 147 (290)
+ +++|||+|.+|++++..|...|. +|++++|++++.+.+.+. +....+++.+.++++|+||.++|....- ...+
T Consensus 109 ~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i-- 185 (253)
T 3u62_A 109 E-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPV-- 185 (253)
T ss_dssp S-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSC--
T ss_pred C-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCC--
Confidence 7 99999999999999999999998 899999998877665542 2223456778889999999999853210 1111
Q ss_pred cccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc-EEe
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS-FLE 188 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~-~~~ 188 (290)
. .+.++++.+++|+... .+ .+.+..++.|++ .++
T Consensus 186 ~---~~~l~~~~~V~Divy~---~T-~ll~~A~~~G~~~~~~ 220 (253)
T 3u62_A 186 S---DDSLKNLSLVYDVIYF---DT-PLVVKARKLGVKHIIK 220 (253)
T ss_dssp C---HHHHTTCSEEEECSSS---CC-HHHHHHHHHTCSEEEC
T ss_pred C---HHHhCcCCEEEEeeCC---Cc-HHHHHHHHCCCcEEEC
Confidence 1 2346789999999877 23 444555556666 544
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.73 E-value=8.7e-09 Score=91.11 Aligned_cols=108 Identities=16% Similarity=0.247 Sum_probs=79.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CC-CeEEEEeCCccchhhHHhC------CCccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL------GAKYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g-~~V~~~d~~~~~~~~~~~~------g~~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
.++|+|||+|.+|+.+++.+.. .+ .+|.+|||++++.+.+.+. .+. ++++++++ ++|+|++++|...
T Consensus 125 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~--- 199 (322)
T 1omo_A 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK--- 199 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS---
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC---
Confidence 5899999999999999999986 33 5899999999888777652 234 67899999 9999999998643
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~ 189 (290)
.++ . .+.+++|+++++++...+. ..++...+..+...|++.
T Consensus 200 pv~--~---~~~l~~G~~V~~ig~~~p~-~~el~~~~~~~a~v~vD~ 240 (322)
T 1omo_A 200 PVV--K---AEWVEEGTHINAIGADGPG-KQELDVEILKKAKIVVDD 240 (322)
T ss_dssp CCB--C---GGGCCTTCEEEECSCCSTT-CCCBCHHHHHTEEEEESC
T ss_pred cee--c---HHHcCCCeEEEECCCCCCC-ccccCHHHHhcCeEEECC
Confidence 333 1 2568999999999766554 334443444444466664
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.3e-08 Score=88.10 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=91.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeE-EEEeCCccchhhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~~ 146 (290)
.++|||||+|.||+.+++.+... +.++ .++|+++++.+.+.+. +..+++.+++++ ++|+|++++|.......+.
T Consensus 10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~- 87 (315)
T 3c1a_A 10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAEITL- 87 (315)
T ss_dssp CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHHHHH-
T ss_pred cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHHHHH-
Confidence 47999999999999999999885 5664 5899998776655444 556678999986 7999999998755443332
Q ss_pred ccccccccCCCCCEE-EEe-cCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHh
Q 022909 147 GKHGAASGMGPGKGY-VDV-STVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIM 224 (290)
Q Consensus 147 ~~~~~~~~~~~~~~l-in~-s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~ 224 (290)
..++.|+.+ +.- ......+.+++.+..++.++.+........ ...++.++++++.+
T Consensus 88 ------~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~----------------~p~~~~~~~~i~~l 145 (315)
T 3c1a_A 88 ------AAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQLF----------------NPAWEALKADLTSI 145 (315)
T ss_dssp ------HHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGGG----------------CHHHHHHHHTHHHH
T ss_pred ------HHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechhc----------------CHHHHHHHHHHHHc
Confidence 335566644 442 244566777888888887766543322111 13445666666677
Q ss_pred CCc
Q 022909 225 GKS 227 (290)
Q Consensus 225 G~~ 227 (290)
|..
T Consensus 146 G~i 148 (315)
T 3c1a_A 146 GPI 148 (315)
T ss_dssp CSE
T ss_pred CCe
Confidence 763
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=4.7e-08 Score=87.13 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=80.9
Q ss_pred CCeEEEEcccHhHHHHHHHHH-H-CCCeEE-EEeCCccchhhHHh-CC--CccCCCHHHHhhc--CCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL-K-AGCDVT-VWNRTKSKCDPLIS-LG--AKYQPSPDEVAAS--CDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~-~-~g~~V~-~~d~~~~~~~~~~~-~g--~~~~~~~~~~~~~--aDivv~~~p~~~~~~ 142 (290)
+++|||||+|.||+.+++.+. . .+.++. ++|+++++.+.+.+ .| ...++++++++++ .|+|++++|......
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 81 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHES 81 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHH
Confidence 579999999999999999998 4 366755 88999888777655 56 5677899999986 899999998766544
Q ss_pred HHhcccccccccCCCCCEEEEe-c-CCChhHHHHHHHHHHHcCCcE
Q 022909 143 DVACGKHGAASGMGPGKGYVDV-S-TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~-s-~~~~~~~~~l~~~l~~~~~~~ 186 (290)
.+. ..++.|..++-- - .....+.+++.+..++.+..+
T Consensus 82 ~~~-------~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 82 SVL-------KAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL 120 (344)
T ss_dssp HHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred HHH-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence 433 334556554432 1 345667778888888877654
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=7.4e-09 Score=88.88 Aligned_cols=111 Identities=18% Similarity=0.096 Sum_probs=80.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
++++.|||+|.+|++++..|...|.+|++++|++++.+.+.+.++... +++++ .++|+||.++|........+ ..+
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l--~~~ 193 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLHNELPL--NKE 193 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSS--CHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCC--ChH
Confidence 689999999999999999999999999999999998887765454332 33443 38999999998643211112 111
Q ss_pred -ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 151 -AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 151 -~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+.+.++++.+++|+...+ .+ .+.+..++.|+..++
T Consensus 194 ~l~~~l~~~~~v~D~vY~P--~T-~ll~~A~~~G~~~~~ 229 (269)
T 3phh_A 194 VLKGYFKEGKLAYDLAYGF--LT-PFLSLAKELKTPFQD 229 (269)
T ss_dssp HHHHHHHHCSEEEESCCSS--CC-HHHHHHHHTTCCEEC
T ss_pred HHHhhCCCCCEEEEeCCCC--ch-HHHHHHHHCcCEEEC
Confidence 122467889999998775 33 377777777776655
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.71 E-value=3.8e-08 Score=86.93 Aligned_cols=111 Identities=12% Similarity=0.092 Sum_probs=76.6
Q ss_pred CCeEEEEcccHhHH-HHHHHHHHC-CCeEEEEeCCccchhhHHh-CCCcc-CCCHHHHh-hcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGT-PMAQNLLKA-GCDVTVWNRTKSKCDPLIS-LGAKY-QPSPDEVA-ASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~-~la~~l~~~-g~~V~~~d~~~~~~~~~~~-~g~~~-~~~~~~~~-~~aDivv~~~p~~~~~~~~~ 145 (290)
+++|||||+|.||+ .+++.+... +.+|.++|+++++.+.+.+ .|+.. ..+..+++ .+.|+|++++|.......+.
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~ 81 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA 81 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHHH
Confidence 47899999999998 599988764 6777799999988776655 56653 33445555 67999999998655443332
Q ss_pred cccccccccCCCCC-EEEEe-cCCChhHHHHHHHHHHHcCCcEEe
Q 022909 146 CGKHGAASGMGPGK-GYVDV-STVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 146 ~~~~~~~~~~~~~~-~lin~-s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
..++.|+ +++.- ......+.+++.+..++.++.+..
T Consensus 82 -------~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 119 (323)
T 1xea_A 82 -------FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYV 119 (323)
T ss_dssp -------HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred -------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEE
Confidence 2344565 44442 234566677888888887766543
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=74.78 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=64.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHH-hCCCccC----CCHHH---H-hhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-SLGAKYQ----PSPDE---V-AASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~-~~g~~~~----~~~~~---~-~~~aDivv~~~p~~~~~ 141 (290)
+++|.|+|+|.+|+.+++.|...|++|+++++++++.+.+. +.|.... .+.+. + ++++|+|++++|.+...
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~ 98 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDSTN 98 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHHH
Confidence 68999999999999999999999999999999998877665 4454321 12222 2 56799999999876544
Q ss_pred HHHhcccccccccCCCCCEEEEecCC
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
..+. .....+.+...++-..+.
T Consensus 99 ~~~~----~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 99 FFIS----MNARYMFNVENVIARVYD 120 (155)
T ss_dssp HHHH----HHHHHTSCCSEEEEECSS
T ss_pred HHHH----HHHHHHCCCCeEEEEECC
Confidence 4333 223334455555544443
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.9e-08 Score=86.43 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=79.4
Q ss_pred CCeEEEEcccHhHHHHHHHHH-H-CCCeE-EEEeCCccchhhHHh-CCC-ccCCCHHHHhh--cCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL-K-AGCDV-TVWNRTKSKCDPLIS-LGA-KYQPSPDEVAA--SCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~-~-~g~~V-~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~--~aDivv~~~p~~~~~~~ 143 (290)
.++|||||+|.||+.+++.+. . .++++ .++|+++++.+.+.+ .|+ ..+++++++++ +.|+|++++|.......
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~ 87 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPEM 87 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHHH
T ss_pred cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHHH
Confidence 579999999999999999998 5 36774 588999888776655 466 56778999987 69999999987655443
Q ss_pred HhcccccccccCCCCCEEEEe--cCCChhHHHHHHHHHHHc-CCcEEe
Q 022909 144 VACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKAT-GASFLE 188 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~--s~~~~~~~~~l~~~l~~~-~~~~~~ 188 (290)
+. ..++.|+.++-- ......+.+++.++.++. ++.+..
T Consensus 88 ~~-------~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~ 128 (346)
T 3cea_A 88 TI-------YAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQS 128 (346)
T ss_dssp HH-------HHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEEC
T ss_pred HH-------HHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEE
Confidence 33 335566654422 233455666788877776 666543
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=6e-08 Score=85.23 Aligned_cols=67 Identities=21% Similarity=0.336 Sum_probs=53.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC--CeEEEEeCCccchhhHHh-C---------CCcc-CCCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLIS-L---------GAKY-QPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~~~~~~~~-~---------g~~~-~~~~~~~~~~aDivv~~~p~~ 138 (290)
|||+|||+|.||..++..|...| ++|.++|+++++.+.+.. . .+.. ..+. +.++++|+|++++|.+
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~ 80 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI 80 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence 68999999999999999999888 799999999877655432 1 1232 3566 6789999999999875
Q ss_pred h
Q 022909 139 E 139 (290)
Q Consensus 139 ~ 139 (290)
.
T Consensus 81 ~ 81 (309)
T 1hyh_A 81 K 81 (309)
T ss_dssp G
T ss_pred c
Confidence 5
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.67 E-value=8e-08 Score=85.25 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=80.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC---Ce-EEEEeCCccchhhHHh-CCC-ccCCCHHHHhh--cCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG---CD-VTVWNRTKSKCDPLIS-LGA-KYQPSPDEVAA--SCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g---~~-V~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~--~aDivv~~~p~~~~~~ 142 (290)
++||||||+|.||+.+++.+...+ ++ |.++|+++++.+.+++ .++ ..+++++++++ +.|+|++++|...+..
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~ 81 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKA 81 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 579999999999999999998654 34 4578999888777665 566 46789999998 5899999998866554
Q ss_pred HHhcccccccccCCCCCEEEEe--cCCChhHHHHHHHHHHHcCCcEE
Q 022909 143 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~--s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
... ..++.|+.++-- -.....+.+++.+..++.++.+.
T Consensus 82 ~~~-------~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~ 121 (334)
T 3ohs_X 82 AVM-------LCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLM 121 (334)
T ss_dssp HHH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHH-------HHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 433 334556654432 14456677788888888776554
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-07 Score=84.70 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=80.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeE-EEEeCCccchhhHHh-CC----CccCCCHHHHhh--cCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLIS-LG----AKYQPSPDEVAA--SCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V-~~~d~~~~~~~~~~~-~g----~~~~~~~~~~~~--~aDivv~~~p~~~~~ 141 (290)
.++|||||+|.||+.+++.+... ++++ .++|+++++.+.+.+ .+ ...+++++++++ +.|+|++++|.....
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 85 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV 85 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHH
Confidence 58999999999999999999875 5665 588999887766654 45 355678999997 589999999875544
Q ss_pred HHHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEEe
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
..+ ...++.|+.++.-- .....+.+++.++.++.++.+..
T Consensus 86 ~~~-------~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~ 127 (362)
T 1ydw_A 86 EWA-------IKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMD 127 (362)
T ss_dssp HHH-------HHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEE
T ss_pred HHH-------HHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 333 23456677554322 34556667888888888776553
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.65 E-value=9.5e-08 Score=85.63 Aligned_cols=109 Identities=14% Similarity=0.227 Sum_probs=80.7
Q ss_pred CCeEEEEcccHhHHHHHHHHH-H-CCCeEE-EEeCCccchhhHHh-CC--CccCCCHHHHhhc--CCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL-K-AGCDVT-VWNRTKSKCDPLIS-LG--AKYQPSPDEVAAS--CDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~-~-~g~~V~-~~d~~~~~~~~~~~-~g--~~~~~~~~~~~~~--aDivv~~~p~~~~~~ 142 (290)
.+||||||+|.||+..++.+. . .+.++. ++|+++++.+.+++ .| ...++++++++++ .|+|++++|......
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 102 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHAD 102 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHHH
Confidence 479999999999999999998 4 367765 89999988777665 45 5677899999984 899999998866554
Q ss_pred HHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcE
Q 022909 143 DVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~ 186 (290)
.+. ..++.|..++--- .....+.+++.++.++.+..+
T Consensus 103 ~~~-------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 103 VAV-------AALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141 (357)
T ss_dssp HHH-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred HHH-------HHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence 433 3345565544321 445667778888888877654
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-07 Score=82.46 Aligned_cols=110 Identities=16% Similarity=0.267 Sum_probs=81.7
Q ss_pred CCeEEEEcccHhHH-HHHHHHHHCCCeE-EEEeCCccchhhHHh-C-CCccCCCHHHHhh--cCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGT-PMAQNLLKAGCDV-TVWNRTKSKCDPLIS-L-GAKYQPSPDEVAA--SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~-~la~~l~~~g~~V-~~~d~~~~~~~~~~~-~-g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~ 144 (290)
.++|||||+|.+|. .++..+...+.+| .++|+++++.+.+++ . +...+++++++++ +.|+|++++|...+...+
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 83 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAELA 83 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHHH
Confidence 47999999999996 6777777678885 689999988877766 3 5677889999997 589999999976655444
Q ss_pred hcccccccccCCCCCE-EEEe-cCCChhHHHHHHHHHHHcCCcEE
Q 022909 145 ACGKHGAASGMGPGKG-YVDV-STVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~-lin~-s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
+ ..++.|+. ++.- ......+.+++.+..++.+..+.
T Consensus 84 ~-------~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 121 (336)
T 2p2s_A 84 L-------RTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFA 121 (336)
T ss_dssp H-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred H-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 3 34556664 4432 24456677788888888776554
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-07 Score=82.72 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=79.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeE-EEEeCCccchhhHHh-CCCc-cCCCHHHHhh--cCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLIS-LGAK-YQPSPDEVAA--SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V-~~~d~~~~~~~~~~~-~g~~-~~~~~~~~~~--~aDivv~~~p~~~~~~~~ 144 (290)
.+||||||+|.||..+++.+... +.++ .++|+++++.+.+.+ .++. .+++++++++ +.|+|++++|.......+
T Consensus 5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 84 (329)
T 3evn_A 5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVA 84 (329)
T ss_dssp CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 47999999999999999998865 4555 488999988777665 4664 6789999998 789999999876554443
Q ss_pred hcccccccccCCCCCEEEE-ec-CCChhHHHHHHHHHHHcCCcEEe
Q 022909 145 ACGKHGAASGMGPGKGYVD-VS-TVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin-~s-~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
. ..++.|+.++- -- .....+.+++.++.++.++.+..
T Consensus 85 ~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v 123 (329)
T 3evn_A 85 K-------AALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLME 123 (329)
T ss_dssp H-------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred H-------HHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 3 33455655442 21 34566777888888888766543
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.3e-08 Score=85.13 Aligned_cols=106 Identities=15% Similarity=0.245 Sum_probs=77.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CC-CeEEEEeCCccchhhHHh-----CCC--ccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS-----LGA--KYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g-~~V~~~d~~~~~~~~~~~-----~g~--~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.++|+|||+|.||+.+++.|.. ++ .+|.+|||+ +.+.+.+ .|+ ..+ +++++++++|+|+.|+|.+
T Consensus 121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~--- 194 (313)
T 3hdj_A 121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST--- 194 (313)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---
T ss_pred CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---
Confidence 5899999999999999999976 34 589999999 4444443 244 345 8999999999999999874
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcC-CcEEe
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG-ASFLE 188 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~-~~~~~ 188 (290)
..++ . .+++++|++++++++..+.. .++...+-.+. ..|+|
T Consensus 195 ~pvl--~---~~~l~~G~~V~~vGs~~p~~-~El~~~~~~~a~~v~vD 236 (313)
T 3hdj_A 195 TPLF--A---GQALRAGAFVGAIGSSLPHT-RELDDEALRRARAVVVE 236 (313)
T ss_dssp SCSS--C---GGGCCTTCEEEECCCSSTTC-CCCCHHHHHHCSEEEES
T ss_pred Cccc--C---HHHcCCCcEEEECCCCCCch-hhcCHHHHhcCCEEEEC
Confidence 2444 1 35689999999998776643 34443333333 35666
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-07 Score=83.55 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=68.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHhCCCcc--CCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKY--QPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~--~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
..||||||+|+||+.+++.+... ++++. ++|+++++.+. .|+.+ .+++.+. .++|+|++|+|.......+
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~~~-- 82 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVERTA-- 82 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHHHH--
T ss_pred CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhHHHH--
Confidence 47999999999999999999874 67776 78999876543 45442 3344444 6899999999865554333
Q ss_pred ccccccccCCCCCEEEEecCC---ChhHHHHHHHHHHHcCCcE
Q 022909 147 GKHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGASF 186 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~---~~~~~~~l~~~l~~~~~~~ 186 (290)
...++.|..+++.... .....+++.++.++.+..+
T Consensus 83 -----~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~ 120 (304)
T 3bio_A 83 -----LEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAA 120 (304)
T ss_dssp -----HHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEE
T ss_pred -----HHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEE
Confidence 2445678888876432 2344467777777777543
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-07 Score=85.37 Aligned_cols=111 Identities=12% Similarity=0.131 Sum_probs=80.1
Q ss_pred CCeEEEEcccHhHH-HHHHHHHHC-CCeE-EEEeCCccchhhHHh-CCCc-----cCCCHHHHhh--cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGT-PMAQNLLKA-GCDV-TVWNRTKSKCDPLIS-LGAK-----YQPSPDEVAA--SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~-~la~~l~~~-g~~V-~~~d~~~~~~~~~~~-~g~~-----~~~~~~~~~~--~aDivv~~~p~~~ 139 (290)
.++|||||+|.||+ .+++.+... ++++ .++|+++++.+.+.+ .|+. .+++++++++ +.|+|++++|...
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~ 162 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL 162 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchh
Confidence 57999999999997 899988765 5665 589999887766655 5654 4678999997 6899999998766
Q ss_pred HHHHHhcccccccccCCCCCEEEEe--cCCChhHHHHHHHHHHHcCCcEEe
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~--s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+...+. ..++.|+.++.- ......+.+++.++.++.++.+..
T Consensus 163 h~~~~~-------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v 206 (433)
T 1h6d_A 163 HAEFAI-------RAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMI 206 (433)
T ss_dssp HHHHHH-------HHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHH-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEE
Confidence 554443 335566644432 234556667888888887766543
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-08 Score=90.93 Aligned_cols=97 Identities=18% Similarity=0.077 Sum_probs=66.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCe-EEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV-TFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDi-vv~~~p~~~~~~~~~~~~ 148 (290)
+++|+|+|+|+||+.+|+++.. +|++|+.+++..... ....|+ +++++++.+|. .++ +|. +++++ + +
T Consensus 212 gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~--~~~~gv----dl~~L~~~~d~~~~l-~~l-~~t~~-i--~ 280 (419)
T 1gtm_A 212 GKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGI--YNPDGL----NADEVLKWKNEHGSV-KDF-PGATN-I--T 280 (419)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEE--EEEEEE----CHHHHHHHHHHHSSS-TTC-TTSEE-E--C
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccc--cCccCC----CHHHHHHHHHhcCEe-ecC-ccCee-e--C
Confidence 8999999999999999999999 999999885432211 111111 56666654432 112 455 34555 4 3
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHH
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 180 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~ 180 (290)
.+.+..|++ .++||++|+..+++++ .++|+
T Consensus 281 ~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~ 310 (419)
T 1gtm_A 281 NEELLELEV-DVLAPAAIEEVITKKN-ADNIK 310 (419)
T ss_dssp HHHHHHSCC-SEEEECSCSCCBCTTG-GGGCC
T ss_pred HHHHHhCCC-CEEEECCCcccCCHHH-HHHhc
Confidence 445667877 5999999999999887 45553
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-07 Score=85.53 Aligned_cols=138 Identities=22% Similarity=0.338 Sum_probs=93.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeE-EEEeCCccchhhHHh-C-C----------------------CccCCCHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLIS-L-G----------------------AKYQPSPDEV 124 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V-~~~d~~~~~~~~~~~-~-g----------------------~~~~~~~~~~ 124 (290)
..||||||+|.||+.+++.+... +++| .++|+++++.+.+.+ . | ...+++.+++
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeL 102 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLI 102 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHH
T ss_pred ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHH
Confidence 47899999999999999988754 5564 588999887766543 1 3 3456799999
Q ss_pred hhc--CCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecC-CChhHHHHHHHHHHHcCCcEEeCccCCCCccccCC
Q 022909 125 AAS--CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDG 201 (290)
Q Consensus 125 ~~~--aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~-~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~ 201 (290)
+++ .|+|++++|.+..-..+. ...++.|+.++...- .......+|.+..++.++.+.
T Consensus 103 L~d~dIDaVviaTp~p~~H~e~a------~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~-------------- 162 (446)
T 3upl_A 103 LSNPLIDVIIDATGIPEVGAETG------IAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYS-------------- 162 (446)
T ss_dssp HTCTTCCEEEECSCCHHHHHHHH------HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEE--------------
T ss_pred hcCCCCCEEEEcCCChHHHHHHH------HHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeee--------------
Confidence 974 899999998754323333 455778888774321 111233567777777665543
Q ss_pred ceEEEecCC-HHHHHHHHHHHHHhCCcEEEeC
Q 022909 202 QLIFLAAGD-KSLYNTVAPLLDIMGKSRFYLG 232 (290)
Q Consensus 202 ~~~~~~~~~-~~~~~~v~~ll~~~G~~~~~~~ 232 (290)
+..++ +.....+.++.+.+|+.++.++
T Consensus 163 ----~~~gdqp~~~~eLv~~a~~~G~~~v~~G 190 (446)
T 3upl_A 163 ----LGAGDEPSSCMELIEFVSALGYEVVSAG 190 (446)
T ss_dssp ----ECTTSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ----ecCCcchHHHHHHHHHHHhCCCeEEEec
Confidence 22233 3455677788888899888775
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-07 Score=83.81 Aligned_cols=109 Identities=7% Similarity=0.025 Sum_probs=78.6
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHC-CCeEE-EEeCCccchhhHHhC--CCccCCCHHHHhhc--CCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL--GAKYQPSPDEVAAS--CDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~-g~~V~-~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~--aDivv~~~p~~~~~~~ 143 (290)
.++|||||+|.||+. +++.+... +.++. ++|+++++.+.+++. +...++++++++++ .|+|++++|.......
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~ 84 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFEM 84 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHHHH
Confidence 479999999999995 88988875 66765 889999888777663 45667899999985 4999999986555433
Q ss_pred HhcccccccccCCCCCEEEEe--cCCChhHHHHHHHHHHHcCCcE
Q 022909 144 VACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~--s~~~~~~~~~l~~~l~~~~~~~ 186 (290)
+. ..++.|+.++-- -.....+.+++.+..++.++.+
T Consensus 85 ~~-------~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~ 122 (359)
T 3m2t_A 85 GL-------LAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVS 122 (359)
T ss_dssp HH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred HH-------HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence 32 334556554421 1345566778888888776654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-07 Score=71.41 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=54.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc----CCCHHHH----hhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEV----AASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~----~~~~~~~----~~~aDivv~~~p~~~~ 140 (290)
+++|.|+|+|.+|+.+++.|...|++|.++|+++++.+.+.+.+... ..+.+.+ ++++|+|++++|....
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~ 83 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEF 83 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHH
Confidence 57899999999999999999999999999999998887777655432 1222222 3478999999885433
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.2e-07 Score=75.41 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=69.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++||+|+|+|+||+.+++.+...+.++. ++|++++. ..++..++++++++ ++|+||-.. .+..+...+
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft-~p~a~~~~~---- 71 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFS-NPNLLFPLL---- 71 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECS-CHHHHHHHH----
T ss_pred ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeC-ChHHHHHHH----
Confidence 4899999999999999999998766655 57887652 35677788899988 999987554 345555544
Q ss_pred cccccCCCCCEEEEecCCChhHH-HHHHHHHHHcCCcEEeCccCC
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTS-KLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~-~~l~~~l~~~~~~~~~~p~~~ 193 (290)
. ++.+..+|..+++-.... +.+.++.+ .+.++-+|+|.
T Consensus 72 ---~-l~~g~~vVigTTG~s~e~~~~l~~aa~--~~~v~~a~N~S 110 (243)
T 3qy9_A 72 ---D-EDFHLPLVVATTGEKEKLLNKLDELSQ--NMPVFFSANMS 110 (243)
T ss_dssp ---T-SCCCCCEEECCCSSHHHHHHHHHHHTT--TSEEEECSSCC
T ss_pred ---H-HhcCCceEeCCCCCCHHHHHHHHHHHh--cCCEEEECCcc
Confidence 2 666766665555543222 23333322 35556666653
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-07 Score=72.81 Aligned_cols=68 Identities=13% Similarity=0.296 Sum_probs=52.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc----CCCHHH---H-hhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDE---V-AASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~----~~~~~~---~-~~~aDivv~~~p~~ 138 (290)
+++|.|+|+|.+|+.+++.|...|++|.++|+++++.+.+.+.+... ..+.+. + +.++|+|+.+++.+
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence 57899999999999999999999999999999987666554444321 122222 2 56799999999865
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-07 Score=83.62 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=78.4
Q ss_pred CCeEEEEcccHhHHH-HHH-HHHH-CCCeEE-EEeCCccchhhHHh-CCCccCCCHHHHhhc--CCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTP-MAQ-NLLK-AGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAAS--CDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~-~l~~-~g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~--aDivv~~~p~~~~~~~ 143 (290)
++||||||+|.||+. .+. .+.. .+++|. ++|+++++.+..++ .++..++++++++++ .|+|++++|...+...
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 81 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY 81 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHHH
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHHH
Confidence 579999999999996 555 3333 367766 88999877644444 367778899999986 8999999987665544
Q ss_pred HhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEE
Q 022909 144 VACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
+. ..++.|+.++.-- .....+.+++.+..++.++.+.
T Consensus 82 ~~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (345)
T 3f4l_A 82 AK-------RALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVT 120 (345)
T ss_dssp HH-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HH-------HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 33 4456677666443 3456677788888888776654
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-07 Score=83.15 Aligned_cols=67 Identities=21% Similarity=0.291 Sum_probs=51.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh---C------CCcc-CCCHHHHhhcCCeEEEEeCChh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS---L------GAKY-QPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~---~------g~~~-~~~~~~~~~~aDivv~~~p~~~ 139 (290)
|||+|||+|.||..++..|...|+ +|.++|+++++.+.... . .... .++ .+.++++|+|++++|.+.
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence 589999999999999999999998 99999999876655331 1 1111 234 356789999999998643
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.2e-07 Score=82.68 Aligned_cols=195 Identities=13% Similarity=0.050 Sum_probs=114.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc------cchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK------SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~------~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
+++|+|||+|.-|.+.|..|+..|.+|.+--|.. ++.+.+.+.|..+. +..|+++.+|+|.+.+|+.. ...+
T Consensus 37 gK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD~~-q~~v 114 (491)
T 3ulk_A 37 GKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPDKQ-HSDV 114 (491)
T ss_dssp TSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCGGG-HHHH
T ss_pred CCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCChhh-HHHH
Confidence 8999999999999999999999999999887632 22344555777765 79999999999999998744 4455
Q ss_pred hcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-----ccCCceE-EEec----CCHHH
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-----AEDGQLI-FLAA----GDKSL 213 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-----~~~~~~~-~~~~----~~~~~ 213 (290)
. +++.+.|++|+.+. .|.|--+.... .-...++.++- +|--.+... .+.+.++ +.+- .+..+
T Consensus 115 y---~~I~p~lk~G~~L~-faHGFnI~~~~---i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~liAVhqeqD~sG~a 187 (491)
T 3ulk_A 115 V---RTVQPLMKDGAALG-YSHGFNIVEVG---EQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEG 187 (491)
T ss_dssp H---HHHGGGSCTTCEEE-ESSCHHHHTTC---CCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEEEECGGGCTTSCH
T ss_pred H---HHHHhhCCCCCEEE-ecCcccccccc---cccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEEEEEeCCCCchhH
Confidence 5 35889999999876 34544221100 00011233222 332221111 1233333 2331 22366
Q ss_pred HHHHHHHHHHhCCc---EEEeCCcchHHHHHHH-H-HHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHH
Q 022909 214 YNTVAPLLDIMGKS---RFYLGDVGNGAAMKLV-V-NMIMGRS-CTFSYSFLTLEFVDFLINTVTMFL 275 (290)
Q Consensus 214 ~~~v~~ll~~~G~~---~~~~~~~g~a~~~k~~-~-n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i 275 (290)
.+.+..+...+|.. ++... .....-..+. . ..+...+ ..+...+....+.|.+|+.++...
T Consensus 188 ~~~AlayA~aiG~~raGvieTT-F~eEtetDLfGEQaVLcGgl~~li~agFetLveaGy~P~~a~~~~ 254 (491)
T 3ulk_A 188 MAIAKAWAAATGGHRAGVLESS-FVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLI 254 (491)
T ss_dssp HHHHHHHHHHHTGGGTCEEECC-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCceeecc-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77777888888753 33222 1111111111 1 1122233 334444566788899997665443
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-07 Score=86.59 Aligned_cols=91 Identities=23% Similarity=0.265 Sum_probs=67.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHH-hCCCcc--CCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI-SLGAKY--QPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~-~~g~~~--~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
+++|+|||+|.||+.+++.+..+|+ +|+++||++++.+.+. +.|... .+++++++.++|+|+.++|.+... +
T Consensus 167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~~~---~- 242 (404)
T 1gpj_A 167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHPV---I- 242 (404)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSCC---B-
T ss_pred CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCCce---e-
Confidence 7999999999999999999999999 8999999987764443 345432 246778888999999999865432 1
Q ss_pred cccccccc--C----CCCCEEEEecC
Q 022909 147 GKHGAASG--M----GPGKGYVDVST 166 (290)
Q Consensus 147 ~~~~~~~~--~----~~~~~lin~s~ 166 (290)
+++.++. | .++.++||++.
T Consensus 243 -~~~~l~~~~lk~r~~~~~v~vdia~ 267 (404)
T 1gpj_A 243 -HVDDVREALRKRDRRSPILIIDIAN 267 (404)
T ss_dssp -CHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred -cHHHHHHHHHhccCCCCEEEEEccC
Confidence 1122332 2 35567888864
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.2e-07 Score=81.23 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=77.9
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHC-CCeEE-EEeCCccchhhHHhCCCccCCCHHHHhhc--CCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivv~~~p~~~~~~~~~ 145 (290)
..+|||||+|.||+. .+..+... +.+|. ++|+++++.+. ...+...++++++++++ .|+|++++|...+...+.
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~ 85 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQ 85 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-TCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-hCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHH
Confidence 579999999999997 78888765 66764 88998876541 11356677899999986 899999999866654443
Q ss_pred cccccccccCCCCCEEEEe-c-CCChhHHHHHHHHHHHcCCcEE
Q 022909 146 CGKHGAASGMGPGKGYVDV-S-TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~-s-~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
..++.|+.++-- - .....+.+++.++.++.++.+.
T Consensus 86 -------~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (352)
T 3kux_A 86 -------SALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLS 122 (352)
T ss_dssp -------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEE
T ss_pred -------HHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 345566654422 1 3456677788888888776553
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.3e-07 Score=81.53 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=78.5
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHC-CCeEE-EEeCCccchhhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~ 145 (290)
..+|||||+|.||+. .+..+... +++|. ++|+++++... ...+...+++++++++ +.|+|++++|.......+.
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~ 85 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLAR 85 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHH
Confidence 478999999999997 77777765 67764 88998865431 1235677789999998 6899999998766554433
Q ss_pred cccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEE
Q 022909 146 CGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
..++.|+.++.-- .....+.+++.++.++.++.+.
T Consensus 86 -------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (364)
T 3e82_A 86 -------LALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLS 122 (364)
T ss_dssp -------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred -------HHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 3455666665433 3456677788888888776653
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=98.49 E-value=8.3e-08 Score=86.19 Aligned_cols=94 Identities=22% Similarity=0.308 Sum_probs=70.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-------CCHHHHhhcCCeEEEEeCChhH-HH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAASCDVTFAMLADPES-AM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~~aDivv~~~p~~~~-~~ 142 (290)
+++|.|+|+|.+|+.+++.++..|.+|+++||++++.+.+.+.+.... .++.+.++++|+||.+++.+.. ..
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~ 246 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAP 246 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCC
Confidence 689999999999999999999999999999999988777655322111 2345667789999999875431 11
Q ss_pred HHhcccccccccCCCCCEEEEecC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++ .++.++.|+++.+++|++.
T Consensus 247 ~li--~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 247 ILV--PASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp CCB--CHHHHTTSCTTCEEEETTC
T ss_pred eec--CHHHHhhCCCCCEEEEEec
Confidence 222 1234677899999999974
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.1e-07 Score=83.78 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=78.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC---------CCeE-EEEeCCccchhhHHh-CCC-ccCCCHHHHhh--cCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA---------GCDV-TVWNRTKSKCDPLIS-LGA-KYQPSPDEVAA--SCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~---------g~~V-~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~--~aDivv~~~p 136 (290)
+.||||||+|.||+..++.++.. +.+| .++|+++++.+.+++ .++ ..+++++++++ +.|+|++++|
T Consensus 26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp 105 (412)
T 4gqa_A 26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSP 105 (412)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSC
T ss_pred cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCC
Confidence 57899999999999999888764 3454 478999988877665 565 46789999997 4799999998
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcE
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~ 186 (290)
........+ ..++.|+.++--= .....+.++|.++.++.+..+
T Consensus 106 ~~~H~~~~~-------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~ 150 (412)
T 4gqa_A 106 NHLHYTMAM-------AAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKT 150 (412)
T ss_dssp GGGHHHHHH-------HHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred cHHHHHHHH-------HHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCee
Confidence 766554443 3455666554321 345566678888877776654
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.7e-07 Score=80.16 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=52.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHH----h--------CCCccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S--------LGAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~----~--------~g~~~~~~~~~~~~~aDivv~~~p 136 (290)
.+||+|||+|.||..+|..++..|+ +|.+||+++++.+... + ..+..+++. +.++++|+|+++++
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg 91 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG 91 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence 4799999999999999999999998 9999999987665321 1 013344567 67899999999984
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-07 Score=72.56 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=76.1
Q ss_pred CCeEEEEcc----cHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~----G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
.++|+|||+ |++|..+++.|...|++ +|+.++++ .+++ .|...+.+++|+-+..|++++++|. +.+..++
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~ 87 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRPP-SALMDHL 87 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSCH-HHHTTTH
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHH
Confidence 689999999 89999999999999997 56666653 1222 4677778899988889999999986 5666665
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+. ..+.++++. ... ++++.+.+++.|++++.
T Consensus 88 ---~~~~~~-gi~~i~~~~-g~~---~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 88 ---PEVLAL-RPGLVWLQS-GIR---HPEFEKALKEAGIPVVA 122 (140)
T ss_dssp ---HHHHHH-CCSCEEECT-TCC---CHHHHHHHHHTTCCEEE
T ss_pred ---HHHHHc-CCCEEEEcC-CcC---HHHHHHHHHHcCCEEEc
Confidence 222332 233555543 222 57888888889999886
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-07 Score=81.87 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=78.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC-C----CccCCCHHHHhhcCCeEEEEeCChhHHHH-
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G----AKYQPSPDEVAASCDVTFAMLADPESAMD- 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~-g----~~~~~~~~~~~~~aDivv~~~p~~~~~~~- 143 (290)
++++.|+|+|.+|++++..|...|. +|.+++|++++.+.+.+. + +. ..+++++.+++|+||.++|.......
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~-~~~~~~l~~~aDiIInaTp~gm~~~~~ 204 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVK-AQAFEQLKQSYDVIINSTSASLDGELP 204 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEE-EEEGGGCCSCEEEEEECSCCCC----C
T ss_pred CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCee-EeeHHHhcCCCCEEEEcCcCCCCCCCC
Confidence 7899999999999999999999996 999999999887766542 1 22 22455655789999999997543221
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc-EEe
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS-FLE 188 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~-~~~ 188 (290)
.+ . .+.++++.+++|+...+. .+. +.+..++.|+. .++
T Consensus 205 ~l--~---~~~l~~~~~V~DlvY~P~-~T~-ll~~A~~~G~~~~~~ 243 (281)
T 3o8q_A 205 AI--D---PVIFSSRSVCYDMMYGKG-YTV-FNQWARQHGCAQAID 243 (281)
T ss_dssp SC--C---GGGEEEEEEEEESCCCSS-CCH-HHHHHHHTTCSEEEC
T ss_pred CC--C---HHHhCcCCEEEEecCCCc-cCH-HHHHHHHCCCCEEEC
Confidence 12 1 245678899999987643 333 55667777765 544
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.2e-07 Score=81.35 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=52.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------C----CCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDivv~~~ 135 (290)
.+||+|||+|.+|..+|..|+..|+ +|.+||+++++.+.... . .+..++++++.++++|+|++++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~ 86 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA 86 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEcc
Confidence 4799999999999999999999898 99999999876654111 1 1233478887899999999998
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.2e-07 Score=81.22 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=80.4
Q ss_pred CCeEEEEcccH---hHHHHHHHHHHCC-CeEE--EEeCCccchhhHHh-CCC---ccCCCHHHHhhc-------CCeEEE
Q 022909 71 PGRIGFLGMGI---MGTPMAQNLLKAG-CDVT--VWNRTKSKCDPLIS-LGA---KYQPSPDEVAAS-------CDVTFA 133 (290)
Q Consensus 71 ~~~IgiiG~G~---iG~~la~~l~~~g-~~V~--~~d~~~~~~~~~~~-~g~---~~~~~~~~~~~~-------aDivv~ 133 (290)
..||||||+|. ||...+..+...+ +++. ++|+++++.+.+++ .|+ ..++++++++++ .|+|++
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I 116 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI 116 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence 46999999999 9999999887765 5664 67999988777655 576 577899999986 899999
Q ss_pred EeCChhHHHHHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEE
Q 022909 134 MLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 134 ~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
++|.......+. ..++.|+.++--= .....+.+++.+..++.++.+.
T Consensus 117 ~tp~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 165 (417)
T 3v5n_A 117 VTPNHVHYAAAK-------EFLKRGIHVICDKPLTSTLADAKKLKKAADESDALFV 165 (417)
T ss_dssp CSCTTSHHHHHH-------HHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEE
T ss_pred CCCcHHHHHHHH-------HHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 999866544433 3456676654321 3456677788888888776543
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.8e-07 Score=79.78 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=77.9
Q ss_pred CCeEEEEcccHhHH-HHHHHHHHCCCeE-EEEeCCccchhhHHh-CC-CccCCCHHHHhhc--CCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGT-PMAQNLLKAGCDV-TVWNRTKSKCDPLIS-LG-AKYQPSPDEVAAS--CDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~-~la~~l~~~g~~V-~~~d~~~~~~~~~~~-~g-~~~~~~~~~~~~~--aDivv~~~p~~~~~~~~ 144 (290)
..+|||||+|.+|. .++..+...+.++ .++|+++++.+.+++ .+ ...++++++++++ .|+|++++|.......+
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~ 105 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELA 105 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHHHH
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence 57999999999995 5677777778885 588999988777665 44 5667899999986 89999999876554333
Q ss_pred hcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcE
Q 022909 145 ACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~ 186 (290)
. ..++.|+.++--= .....+.+++.++.++.++.+
T Consensus 106 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l 142 (361)
T 3u3x_A 106 I-------RAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIF 142 (361)
T ss_dssp H-------HHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCE
T ss_pred H-------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 2 3455566544321 344566777888877766544
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=6.8e-07 Score=78.49 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=51.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHh---C-------C--CccCCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLIS---L-------G--AKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~---~-------g--~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
|||+|||+|.||..++..|+.. |++|.++|+++++.+.... . . +..+++.++ ++++|+|++++|.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~ 79 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence 5899999999999999999874 7899999999876654321 1 1 233356766 8999999999976
Q ss_pred h
Q 022909 138 P 138 (290)
Q Consensus 138 ~ 138 (290)
+
T Consensus 80 p 80 (310)
T 1guz_A 80 P 80 (310)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.45 E-value=7e-07 Score=79.38 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=79.8
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHC--CCeE-EEEeCCccchhhHHh-CCC-ccCCCHHHHhh--cCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKA--GCDV-TVWNRTKSKCDPLIS-LGA-KYQPSPDEVAA--SCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~--g~~V-~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~--~aDivv~~~p~~~~~~ 142 (290)
..+|||||+| .+|...+..+... +.++ .++|+++++.+.+++ .++ ..+++++++++ +.|+|++++|......
T Consensus 18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~ 97 (340)
T 1zh8_A 18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP 97 (340)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH
T ss_pred ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHHHH
Confidence 5789999999 8999999999876 4565 588999988777655 465 66789999997 5899999998765543
Q ss_pred HHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEE
Q 022909 143 DVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
... ..++.|+.++--- .....+.+++.++.++.+..+.
T Consensus 98 ~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 137 (340)
T 1zh8_A 98 FIE-------KALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVY 137 (340)
T ss_dssp HHH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEE
T ss_pred HHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 332 3455566554322 2355666788888887776543
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.4e-07 Score=80.65 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=81.6
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-CCCccCCCHHHHhhc--CCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAAS--CDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~--aDivv~~~p~~~~~~~~ 144 (290)
.+||||||+| .+|..++..+... +.++. ++|+++++.+.+++ .|+..+.++++++++ .|+|++++|...+...+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~ 81 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEHV 81 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHH
Confidence 5799999999 9999999999875 55654 88999887766654 578888899999985 89999999876554433
Q ss_pred hcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEEe
Q 022909 145 ACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
. ..++.|+.++--- .....+.+++.+..++.++.+.-
T Consensus 82 ~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 120 (387)
T 3moi_A 82 V-------QASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVV 120 (387)
T ss_dssp H-------HHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEE
T ss_pred H-------HHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEE
Confidence 3 3345565554321 34566777888888887766543
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.44 E-value=7.4e-07 Score=79.42 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=77.6
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHC-CCeEE-EEeCCccchhhHHh-CCC-ccCCCHHHHhhc--CCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGA-KYQPSPDEVAAS--CDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~~--aDivv~~~p~~~~~~~ 143 (290)
+.||||||+|.||+. ++..+... +.+|. ++|+++++.+.+++ .|+ ..++++++++++ .|+|++++|.......
T Consensus 23 mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~~~ 102 (350)
T 4had_A 23 MLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHIEW 102 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHHHH
T ss_pred ccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhHHH
Confidence 479999999999986 56777665 56765 78999988877765 566 467899999964 7999999997665544
Q ss_pred HhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEE
Q 022909 144 VACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
.+ ..++.|+.++--= .....+.+++.++.++.++.+.
T Consensus 103 ~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 141 (350)
T 4had_A 103 SI-------KAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVT 141 (350)
T ss_dssp HH-------HHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEE
T ss_pred HH-------HHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCcee
Confidence 33 3344555443211 2345567788888887776543
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.2e-07 Score=80.69 Aligned_cols=110 Identities=9% Similarity=0.028 Sum_probs=81.5
Q ss_pred CCeEEEEcccH---hHHHHHHHHHHCC-CeEE--EEeCCccchhhHHh-CCC---ccCCCHHHHhhc-------CCeEEE
Q 022909 71 PGRIGFLGMGI---MGTPMAQNLLKAG-CDVT--VWNRTKSKCDPLIS-LGA---KYQPSPDEVAAS-------CDVTFA 133 (290)
Q Consensus 71 ~~~IgiiG~G~---iG~~la~~l~~~g-~~V~--~~d~~~~~~~~~~~-~g~---~~~~~~~~~~~~-------aDivv~ 133 (290)
..+|||||+|. ||+..+..+...+ +++. ++|+++++.+.+++ .|+ ..++++++++++ .|+|++
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i 91 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI 91 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence 47899999999 9999999887765 6765 57999988777655 677 578899999975 899999
Q ss_pred EeCChhHHHHHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEE
Q 022909 134 MLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 134 ~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
++|...+...+. ..++.|+.++--= .....+.+++.++.++.++.+.
T Consensus 92 ~tp~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 140 (398)
T 3dty_A 92 ATPNGTHYSITK-------AALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVG 140 (398)
T ss_dssp ESCGGGHHHHHH-------HHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcHHHHHHHH-------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 999866554433 3344566554321 3456677888888888776553
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.3e-07 Score=79.56 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=70.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeE-EEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
.+||+|||+|+||+.+++.+... ++++ .++|+++++ .+. .++..++++++++.++|+|++++|.......+.
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~~~~--- 76 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIPEQA--- 76 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH---
T ss_pred CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHHHHH---
Confidence 47899999999999999999876 5664 588998655 222 455556778888888999999998765544433
Q ss_pred ccccccCCCCCEEEEecCCC--hhHH-HHHHHHHHHcC
Q 022909 149 HGAASGMGPGKGYVDVSTVD--GDTS-KLINGHIKATG 183 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~--~~~~-~~l~~~l~~~~ 183 (290)
..++.|..++...... .... +++.++.++++
T Consensus 77 ----~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~ 110 (320)
T 1f06_A 77 ----PKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG 110 (320)
T ss_dssp ----HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred ----HHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence 3456677776554433 2233 45666666544
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=7.8e-07 Score=78.51 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=51.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh---C-------C--CccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS---L-------G--AKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~---~-------g--~~~~~~~~~~~~~aDivv~~~p 136 (290)
.+||+|||+|.||..++..++..|+ +|.++|+++++.+.... . . +..+.+. +.+++||+||++++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g 81 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAG 81 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence 5799999999999999999999998 99999999876543211 1 1 2333567 77899999999983
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1e-06 Score=81.15 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=78.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeE-EEEeCCccchhhHHh----CC---CccCC----CHHHHhh--cCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLIS----LG---AKYQP----SPDEVAA--SCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V-~~~d~~~~~~~~~~~----~g---~~~~~----~~~~~~~--~aDivv~~~ 135 (290)
.++|||||+|.||+..++.+... +.+| .++|+++++.+.+++ .| ...++ +++++++ +.|+|++++
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t 99 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS 99 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC
T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC
Confidence 57999999999999999998875 5665 588999888776543 34 45566 8999997 489999999
Q ss_pred CChhHHHHHhcccccccccCCCCCEEEEe--cCCChhHHHHHHHHHHHcCCcEE
Q 022909 136 ADPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~~~~~~~lin~--s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
|...+...++ ..++.|+.++-- -.....+.+++.++.++.+..+.
T Consensus 100 p~~~h~~~~~-------~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~ 146 (444)
T 2ixa_A 100 PWEWHHEHGV-------AAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLM 146 (444)
T ss_dssp CGGGHHHHHH-------HHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred CcHHHHHHHH-------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 9765544433 345566655432 13455666788888877776543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-07 Score=83.58 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=74.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC------CccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG------AKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g------~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
.|||+|+|+|.+|+.+++.|.. .++|.++|++.++.+.+.+.. +.-.+++.++++++|+|+.++|.... ..+
T Consensus 16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~-~~v 93 (365)
T 3abi_A 16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLG-FKS 93 (365)
T ss_dssp CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGH-HHH
T ss_pred ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCccc-chH
Confidence 5899999999999999999965 589999999988776655421 11123456778899999999986532 233
Q ss_pred hcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
. ...++.|..++|+|- ......++.+..++.++.++.
T Consensus 94 ~------~~~~~~g~~yvD~s~-~~~~~~~l~~~a~~~g~~~i~ 130 (365)
T 3abi_A 94 I------KAAIKSKVDMVDVSF-MPENPLELRDEAEKAQVTIVF 130 (365)
T ss_dssp H------HHHHHHTCEEEECCC-CSSCGGGGHHHHHHTTCEEEC
T ss_pred H------HHHHhcCcceEeeec-cchhhhhhhhhhccCCceeee
Confidence 3 234556777888753 233445566666666665543
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-06 Score=78.88 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=75.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--------CCeE-EEEeCCccchhhHHh-CCC-ccCCCHHHHhhc--CCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--------GCDV-TVWNRTKSKCDPLIS-LGA-KYQPSPDEVAAS--CDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--------g~~V-~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~~--aDivv~~~p~ 137 (290)
+-||||||+|.||+..++.+... +.+| .++|+++++.+.+++ .++ ..++++++++++ .|+|++++|.
T Consensus 25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~ 104 (393)
T 4fb5_A 25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPN 104 (393)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCG
T ss_pred CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCCh
Confidence 35899999999999888776442 4554 588999998887765 565 467899999974 7999999998
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcE
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~ 186 (290)
..+....+ ..++.|+.++--= .....+.+++.++.++.+..+
T Consensus 105 ~~H~~~a~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l 148 (393)
T 4fb5_A 105 QFHAEMAI-------AALEAGKHVWCEKPMAPAYADAERMLATAERSGKVA 148 (393)
T ss_dssp GGHHHHHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHH-------HHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCcc
Confidence 66655443 3344555544221 344556677888887776654
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.8e-07 Score=69.48 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=74.4
Q ss_pred CCeEEEEcc----cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~----G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.++|+|||+ |++|..+++.|...|++| |+.+++. +.+ .|...+.+++|+....|++++++|. +....++
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v--~~Vnp~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv- 94 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDV--YPVNPKY-EEV--LGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYV- 94 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEE--EEECTTC-SEE--TTEECBSSGGGCSSCCSEEEECSCH-HHHHHHH-
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEE--EEECCCC-CeE--CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHH-
Confidence 588999999 799999999999999985 4545543 222 4677778899988889999999986 5556666
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+. ..+.+++. +.. ..+++.+.+++.|++++.
T Consensus 95 --~~~~~~-gi~~i~~~-~g~---~~~~l~~~a~~~Gi~vvG 129 (144)
T 2d59_A 95 --EQAIKK-GAKVVWFQ-YNT---YNREASKKADEAGLIIVA 129 (144)
T ss_dssp --HHHHHH-TCSEEEEC-TTC---CCHHHHHHHHHTTCEEEE
T ss_pred --HHHHHc-CCCEEEEC-CCc---hHHHHHHHHHHcCCEEEc
Confidence 222322 22344443 222 267888889999999885
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.9e-07 Score=82.85 Aligned_cols=110 Identities=12% Similarity=0.264 Sum_probs=76.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--CCeEE-EEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHH---HH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESA---MD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~---~~ 143 (290)
+.||+|||+| +|+..++.+... ++++. ++|+++++.+.+++ +|+..++++++++++.|++++++|..... ..
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~~ 85 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGTQ 85 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHHHH
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhHHH
Confidence 5899999999 799888887764 46654 88999988877665 78888899999999999999999875431 11
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
+. ...++.|+.++--=-....+.+++.+..+++|+.+.
T Consensus 86 ~a------~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~ 123 (372)
T 4gmf_A 86 LA------RHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYW 123 (372)
T ss_dssp HH------HHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEE
T ss_pred HH------HHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEE
Confidence 11 223444554433222345566777787777776654
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-06 Score=78.84 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=77.0
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHC-CCeEE-EEeCCccchhhHHhC-CCccCCCHHHHhhc--CCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAAS--CDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~--aDivv~~~p~~~~~~~~ 144 (290)
+.||||||+|.||+. .+..+... +.+|. ++|+++++.. ++. +...++++++++++ .|+|++++|........
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~ 82 (362)
T 3fhl_A 5 IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEYA 82 (362)
T ss_dssp CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence 479999999999997 77777765 67764 8899877632 233 56777899999987 89999999976655443
Q ss_pred hcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEE
Q 022909 145 ACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
. ..++.|+.++--- .....+.+++.++.++.++.+.
T Consensus 83 ~-------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (362)
T 3fhl_A 83 G-------MALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLS 120 (362)
T ss_dssp H-------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred H-------HHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 3 3455566554321 3456677788888888776553
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=98.39 E-value=9.4e-07 Score=78.83 Aligned_cols=108 Identities=9% Similarity=0.129 Sum_probs=75.4
Q ss_pred CCeEEEEcccHhHH-HHHHHHHHC-CCeEE-EEeCCccchhhHHh----CCCccCCCHHHHhhc--CCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGT-PMAQNLLKA-GCDVT-VWNRTKSKCDPLIS----LGAKYQPSPDEVAAS--CDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~-~la~~l~~~-g~~V~-~~d~~~~~~~~~~~----~g~~~~~~~~~~~~~--aDivv~~~p~~~~~ 141 (290)
++||||||+|.||+ ..+..+... +++|. ++|++ +.+.+++ .++..++++++++++ .|+|++++|...+.
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 79 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHY 79 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHH
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHH
Confidence 57999999999998 577767654 56764 78887 3344433 466778899999986 89999999886654
Q ss_pred HHHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEE
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
..+. ..++.|+.++--= .....+.+++.++.++.++.+.
T Consensus 80 ~~~~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (349)
T 3i23_A 80 DLAK-------QAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVM 120 (349)
T ss_dssp HHHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHH-------HHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 4433 3345666554321 3445667788888888776654
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.3e-07 Score=76.37 Aligned_cols=110 Identities=16% Similarity=0.143 Sum_probs=77.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC-C---CccCCCHHHHh-hcCCeEEEEeCChhHHH-H
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G---AKYQPSPDEVA-ASCDVTFAMLADPESAM-D 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~-g---~~~~~~~~~~~-~~aDivv~~~p~~~~~~-~ 143 (290)
++++.|+|+|.+|++++..|...|. +|++++|++++.+.+.+. + +.. .+++++- .++|+||.++|....-. .
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~-~~~~~l~~~~~DivInaTp~gm~~~~~ 198 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRI-SRYEALEGQSFDIVVNATSASLTADLP 198 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEE-ECSGGGTTCCCSEEEECSSGGGGTCCC
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeE-eeHHHhcccCCCEEEECCCCCCCCCCC
Confidence 7999999999999999999999996 999999999887776552 1 121 2344433 68999999998654211 0
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc-EEe
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS-FLE 188 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~-~~~ 188 (290)
.+ . .+.++++.+++|+...+.. + .+.+..++.|+. .++
T Consensus 199 ~i--~---~~~l~~~~~V~DlvY~P~~-T-~ll~~A~~~G~~~~~~ 237 (272)
T 3pwz_A 199 PL--P---ADVLGEAALAYELAYGKGL-T-PFLRLAREQGQARLAD 237 (272)
T ss_dssp CC--C---GGGGTTCSEEEESSCSCCS-C-HHHHHHHHHSCCEEEC
T ss_pred CC--C---HHHhCcCCEEEEeecCCCC-C-HHHHHHHHCCCCEEEC
Confidence 11 1 2457889999999766433 3 355666777765 444
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-06 Score=76.40 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=51.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh---C-------C--CccCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS---L-------G--AKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~---~-------g--~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
.+||+|||+|.||..++..++..|+ +|.++|+++++.+.... . . +..+++. +.++++|+||++.+.
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~ 80 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGA 80 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCC
Confidence 4799999999999999999999997 99999998866543211 1 1 2233566 678999999999854
Q ss_pred h
Q 022909 138 P 138 (290)
Q Consensus 138 ~ 138 (290)
+
T Consensus 81 p 81 (309)
T 1ur5_A 81 P 81 (309)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=74.58 Aligned_cols=108 Identities=25% Similarity=0.256 Sum_probs=74.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-CC---ccCCCHHHHh-hcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GA---KYQPSPDEVA-ASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g~---~~~~~~~~~~-~~aDivv~~~p~~~~~~~~~ 145 (290)
++++.|+|+|.+|++++..|...|.+|++++|++++.+.+.+. +. ....+.+++. .++|+||.++|.... ..+
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~-~~~- 196 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-GDI- 196 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TCC-
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC-CCC-
Confidence 6899999999999999999999999999999998877666542 11 1112334443 489999999987543 111
Q ss_pred cccccc-cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc
Q 022909 146 CGKHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 185 (290)
Q Consensus 146 ~~~~~~-~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~ 185 (290)
..+ .+.++++.+++|+...+.. + .+.+..++.|..
T Consensus 197 ---~~i~~~~l~~~~~v~D~~y~p~~-t-~~~~~a~~~G~~ 232 (271)
T 1nyt_A 197 ---PAIPSSLIHPGIYCYDMFYQKGK-T-PFLAWCEQRGSK 232 (271)
T ss_dssp ---CCCCGGGCCTTCEEEESCCCSSC-C-HHHHHHHHTTCC
T ss_pred ---CCCCHHHcCCCCEEEEeccCCcC-C-HHHHHHHHcCCC
Confidence 001 2346789999999876433 2 345566666655
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=75.59 Aligned_cols=111 Identities=17% Similarity=0.131 Sum_probs=79.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC------C--CccC--CCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL------G--AKYQ--PSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~------g--~~~~--~~~~~~~~~aDivv~~~p~~~ 139 (290)
++++.|+|+|.+|++++..|...|. +|++++|++++.+.+++. + +... +++++.++++|+||.++|...
T Consensus 127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm 206 (283)
T 3jyo_A 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGM 206 (283)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTTS
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCCC
Confidence 7899999999999999999999998 799999999887765431 1 1122 377888899999999998532
Q ss_pred HHHH--HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 140 SAMD--VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 140 ~~~~--~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.-.. .+ ..+.++++.+++|+.-.+.. + .+.+..++.|...++
T Consensus 207 ~~~~~~pi-----~~~~l~~~~~v~DlvY~P~~-T-~ll~~A~~~G~~~~~ 250 (283)
T 3jyo_A 207 PAHPGTAF-----DVSCLTKDHWVGDVVYMPIE-T-ELLKAARALGCETLD 250 (283)
T ss_dssp TTSCSCSS-----CGGGCCTTCEEEECCCSSSS-C-HHHHHHHHHTCCEEC
T ss_pred CCCCCCCC-----CHHHhCCCCEEEEecCCCCC-C-HHHHHHHHCcCeEeC
Confidence 1110 11 13457889999999655433 2 455555666766554
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.5e-07 Score=77.99 Aligned_cols=66 Identities=15% Similarity=0.282 Sum_probs=48.1
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh---CC------CccC-CCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS---LG------AKYQ-PSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~---~g------~~~~-~~~~~~~~~aDivv~~~p~~ 138 (290)
|||+|||+|.+|..++..++..|+ +|.++|+++++.+.... .. .... ++ .+.++++|+|+++++.+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~ 78 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGAN 78 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC---
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCC
Confidence 589999999999999999999998 99999999865443211 11 1111 34 35688999999999644
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-06 Score=77.92 Aligned_cols=108 Identities=12% Similarity=0.171 Sum_probs=76.8
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHC-CCeEE-EEeCCccchhhHHhC-CCccCCCHHHHhh--cCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~ 144 (290)
..+|||||+|.||+. .+..+... +++|. ++|+++++. .++. +...+++++++++ +.|+|++++|...+...+
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~--~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~ 82 (358)
T 3gdo_A 5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEV--KRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHT 82 (358)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHH--HHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHH
T ss_pred cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH--HhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 479999999999997 77777665 66764 789987652 2233 5677789999998 689999999986665444
Q ss_pred hcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEE
Q 022909 145 ACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
. ..++.|+.++--- .....+.+++.++.++.++.+.
T Consensus 83 ~-------~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~ 120 (358)
T 3gdo_A 83 M-------ACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLS 120 (358)
T ss_dssp H-------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred H-------HHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 3 3455666555322 3456677788888888776543
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=81.42 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=79.2
Q ss_pred CCeEEEEcc----cHhHHHHHHHHHHC--CCeE-EEEeCCccchhhHHh-CCCc---cCCCHHHHhh--cCCeEEEEeCC
Q 022909 71 PGRIGFLGM----GIMGTPMAQNLLKA--GCDV-TVWNRTKSKCDPLIS-LGAK---YQPSPDEVAA--SCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~----G~iG~~la~~l~~~--g~~V-~~~d~~~~~~~~~~~-~g~~---~~~~~~~~~~--~aDivv~~~p~ 137 (290)
..+|||||+ |.||...++.+... +.+| .++|+++++.+.+++ .|+. .+++++++++ +.|+|++++|.
T Consensus 39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~ 118 (479)
T 2nvw_A 39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV 118 (479)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCc
Confidence 479999999 99999999999886 6675 588999888776655 5654 6789999996 58999999987
Q ss_pred hhHHHHHhcccccccccCCCC------C-EEEEe-cCCChhHHHHHHHHHHHcC-CcE
Q 022909 138 PESAMDVACGKHGAASGMGPG------K-GYVDV-STVDGDTSKLINGHIKATG-ASF 186 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~------~-~lin~-s~~~~~~~~~l~~~l~~~~-~~~ 186 (290)
......++ ..++.| + +++.- -.....+.+++.++.++.+ +.+
T Consensus 119 ~~H~~~~~-------~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 169 (479)
T 2nvw_A 119 PEHYEVVK-------NILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQT 169 (479)
T ss_dssp HHHHHHHH-------HHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEE
T ss_pred HHHHHHHH-------HHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 65544433 234445 4 45543 2345666778888887776 544
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-05 Score=69.54 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=74.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~~~ 147 (290)
..||+|+|+ |++|+.+++.+...|+++ ++..+|.+... ...|+..+.+++++.+ ..|++++++|... ...++
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~-V~~V~p~~~g~-~~~G~~vy~sl~el~~~~~~D~viI~tP~~~-~~~~~-- 81 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTKM-VGGVTPGKGGT-THLGLPVFNTVREAVAATGATASVIYVPAPF-CKDSI-- 81 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTTC-EETTEEEESSHHHHHHHHCCCEEEECCCGGG-HHHHH--
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeE-EEEeCCCcccc-eeCCeeccCCHHHHhhcCCCCEEEEecCHHH-HHHHH--
Confidence 588999998 999999999999889883 34444432210 1356777889999988 8999999998754 44444
Q ss_pred cccccccCCCCC-EEEEecCC-ChhHHHHHHHHHHHcCCcEEe
Q 022909 148 KHGAASGMGPGK-GYVDVSTV-DGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 148 ~~~~~~~~~~~~-~lin~s~~-~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.+.++.|. .+|..+.+ ...+.+++.+..++.+++++.
T Consensus 82 ----~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~liG 120 (288)
T 2nu8_A 82 ----LEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIG 120 (288)
T ss_dssp ----HHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred ----HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 12222332 33445544 344566888888888887764
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.33 E-value=8.2e-07 Score=81.72 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=78.7
Q ss_pred CCeEEEEcc----cHhHHHHHHHHHHC--CCeE-EEEeCCccchhhHHh-CCCc---cCCCHHHHhh--cCCeEEEEeCC
Q 022909 71 PGRIGFLGM----GIMGTPMAQNLLKA--GCDV-TVWNRTKSKCDPLIS-LGAK---YQPSPDEVAA--SCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~----G~iG~~la~~l~~~--g~~V-~~~d~~~~~~~~~~~-~g~~---~~~~~~~~~~--~aDivv~~~p~ 137 (290)
..+|||||+ |.||..+++.+... +++| .++|+++++.+.+++ .|+. .+.+++++++ +.|+|++++|.
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 99 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQV 99 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCH
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCc
Confidence 468999999 99999999999886 6675 589999888776655 4654 6789999997 58999999987
Q ss_pred hhHHHHHhcccccccccCCCC------C-EEEEe-cCCChhHHHHHHHHHHHcCCcE
Q 022909 138 PESAMDVACGKHGAASGMGPG------K-GYVDV-STVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~------~-~lin~-s~~~~~~~~~l~~~l~~~~~~~ 186 (290)
..+...+. ..++.| + +++.- ......+.+++.++.++.++.+
T Consensus 100 ~~H~~~~~-------~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~ 149 (438)
T 3btv_A 100 ASHYEVVM-------PLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQT 149 (438)
T ss_dssp HHHHHHHH-------HHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHH-------HHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeE
Confidence 65544433 223334 3 44442 2345667778888887776554
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=76.95 Aligned_cols=66 Identities=18% Similarity=0.380 Sum_probs=49.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchh--hHH-hCCC------c--cCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLI-SLGA------K--YQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~--~~~-~~g~------~--~~~~~~~~~~~aDivv~~~p~ 137 (290)
.|||+|||+|.||..++..|...|+ +|.++|+++++.+ ... ..+. . ...+. +.++++|+|+++++.
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~aD~Vii~v~~ 85 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGP 85 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHhCCCCEEEECCCC
Confidence 5899999999999999999999998 9999999976554 121 1111 1 11243 567899999999954
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.31 E-value=5.4e-07 Score=77.55 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=78.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHH---HHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAM---DVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~---~~~ 145 (290)
++++.|||+|.+|++++..|...|. +|++++|++++.+.+.+ .+.....++. +.++|+||.++|...... ...
T Consensus 119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~~ 196 (271)
T 1npy_A 119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMDL 196 (271)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTSC
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCCC
Confidence 5789999999999999999999997 89999999888777665 2332222222 468999999999654211 000
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeC
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~ 189 (290)
.-..+.++++.+++|+...+. .+ .+.+..++.|..+++.
T Consensus 197 ---~~~~~~l~~~~~v~DlvY~P~-~T-~ll~~A~~~G~~~i~G 235 (271)
T 1npy_A 197 ---AFPKAFIDNASVAFDVVAMPV-ET-PFIRYAQARGKQTISG 235 (271)
T ss_dssp ---SSCHHHHHHCSEEEECCCSSS-SC-HHHHHHHHTTCEEECH
T ss_pred ---CCCHHHcCCCCEEEEeecCCC-CC-HHHHHHHHCCCEEECC
Confidence 000123567889999976443 33 6777777778777653
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.3e-07 Score=78.25 Aligned_cols=111 Identities=21% Similarity=0.220 Sum_probs=74.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----CCccCCCHHHHhh-cCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAA-SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~-~aDivv~~~p~~~~~~~~ 144 (290)
++++.|+|+|.+|++++..|...|.+|++++|++++.+.+.+. .+. ..+++++.+ ++|+||.++|..... .+
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~-~~~~~~~~~~~~DivIn~t~~~~~~-~~ 196 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQ-AVSMDSIPLQTYDLVINATSAGLSG-GT 196 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEE-EEEGGGCCCSCCSEEEECCCC-------
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeE-EeeHHHhccCCCCEEEECCCCCCCC-CC
Confidence 6899999999999999999999999999999998877766541 111 123444334 899999999875431 11
Q ss_pred hcccccc-cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc-EEe
Q 022909 145 ACGKHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS-FLE 188 (290)
Q Consensus 145 ~~~~~~~-~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~-~~~ 188 (290)
. .+ .+.++++.+++|++..+..++. +.+..++.|.. +++
T Consensus 197 ~----~i~~~~l~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v~ 237 (272)
T 1p77_A 197 A----SVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVSD 237 (272)
T ss_dssp -----CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEEC
T ss_pred C----CCCHHHcCCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEeeC
Confidence 0 01 1234678899999876544233 45566666765 553
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4.9e-06 Score=73.04 Aligned_cols=109 Identities=10% Similarity=0.091 Sum_probs=78.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeE-EEEeCCccchhhHHh--CCCccCCCHHHHh----------hcCCeEEEEeC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDV-TVWNRTKSKCDPLIS--LGAKYQPSPDEVA----------ASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V-~~~d~~~~~~~~~~~--~g~~~~~~~~~~~----------~~aDivv~~~p 136 (290)
++||||||+ |.||...++.+...+.++ .++|+++++.. +.+ .+...++++++++ .+.|+|++++|
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP 81 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGL-VDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP 81 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGG-GGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHH-HHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence 589999999 789999999999888765 58899887643 333 2466778999988 46899999998
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEE
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
...+..... ..++.|+.++--= .....+.++|.++.++.+..+.
T Consensus 82 ~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 127 (312)
T 3o9z_A 82 NHLHYPQIR-------MALRLGANALSEKPLVLWPEEIARLKELEARTGRRVY 127 (312)
T ss_dssp GGGHHHHHH-------HHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEE
T ss_pred chhhHHHHH-------HHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 766544433 3455666654321 3455677788888888776653
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.1e-06 Score=73.11 Aligned_cols=110 Identities=9% Similarity=0.067 Sum_probs=78.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeE-EEEeCCccchhhHHh--CCCccCCCHHHHh-----------hcCCeEEEEe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDV-TVWNRTKSKCDPLIS--LGAKYQPSPDEVA-----------ASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V-~~~d~~~~~~~~~~~--~g~~~~~~~~~~~-----------~~aDivv~~~ 135 (290)
+++|||||+ |.||...++.+...+.++ .++|+++++. .+.+ .+...++++++++ .+.|+|++++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~t 81 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICS 81 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECS
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECC
Confidence 589999999 799999999999888765 5889988764 3333 2566778999987 4689999999
Q ss_pred CChhHHHHHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEEe
Q 022909 136 ADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
|...+..... ..++.|+.++--= .....+.+++.+..++.+..+..
T Consensus 82 P~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v 129 (318)
T 3oa2_A 82 PNYLHYPHIA-------AGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLYN 129 (318)
T ss_dssp CGGGHHHHHH-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEEE
T ss_pred CcHHHHHHHH-------HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 8766554443 3345565544221 34556777888888887766543
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.7e-06 Score=74.45 Aligned_cols=105 Identities=11% Similarity=0.100 Sum_probs=74.8
Q ss_pred CCeEEEEcccHhHH-HHHHHHHHC-CCeE-EEEeCCccchhhHHhCCCccCCCHHHHhhc---CCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGT-PMAQNLLKA-GCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~-~la~~l~~~-g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivv~~~p~~~~~~~~ 144 (290)
..||||||+|.||+ ..++.+... +.+| .++|+++++ .|+..++++++++++ .|+|++++|........
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~ 98 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAA 98 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHH
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHH
Confidence 47999999999998 788888875 5665 478888653 357777899999976 89999999865443332
Q ss_pred hcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEEe
Q 022909 145 ACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
...++.|+.++--- .....+.+++.+..++.++.+.-
T Consensus 99 -------~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 137 (330)
T 4ew6_A 99 -------YKALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFA 137 (330)
T ss_dssp -------HHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred -------HHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEE
Confidence 33455666555221 33455667888888887776544
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.7e-05 Score=65.86 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=87.0
Q ss_pred CCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccC
Q 022909 114 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVS 192 (290)
Q Consensus 114 g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~ 192 (290)
|++.+++-.|+++++|++++-+|....+..++ +++++.+++|+++.|+.+.++...-...+.++++.+.+-+ ||-.
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Ia---kkii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPaa 204 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGC 204 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCTTHHHHH---HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSS
T ss_pred CcEeecchHHHhcCCCEEEEecCCCCCcHHHH---HHHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 77788889999999999999999988888888 7789999999999999999988766665556655566655 4532
Q ss_pred CCCccccCCceEEEec-CCHHHHHHHHHHHHHhCCcEEEeC
Q 022909 193 GSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLG 232 (290)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~ll~~~G~~~~~~~ 232 (290)
-+.. .+....-.+ .+++.++++.++.+..|+.+|.+.
T Consensus 205 VPgt---~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vP 242 (358)
T 2b0j_A 205 VPEM---KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMP 242 (358)
T ss_dssp CTTT---CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred CCCC---CCccccccccCCHHHHHHHHHHHHHhCCCeEecc
Confidence 2211 344332222 468899999999999999998865
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-06 Score=80.81 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=51.0
Q ss_pred CCeEEEEcccHh-HHHHHHHHHHC-----CCeEEEEeCCccchhhHHh--------C----CCccCCCHHHHhhcCCeEE
Q 022909 71 PGRIGFLGMGIM-GTPMAQNLLKA-----GCDVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVTF 132 (290)
Q Consensus 71 ~~~IgiiG~G~i-G~~la~~l~~~-----g~~V~~~d~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDivv 132 (290)
.+||+|||+|.+ |.+++..|... +.+|.+||+++++.+...+ . .+..++++++++++||+|+
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV 107 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 107 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence 469999999998 66688777766 5689999999876544221 1 1333468888999999999
Q ss_pred EEeCC
Q 022909 133 AMLAD 137 (290)
Q Consensus 133 ~~~p~ 137 (290)
+++|.
T Consensus 108 iaag~ 112 (472)
T 1u8x_X 108 AHIRV 112 (472)
T ss_dssp ECCCT
T ss_pred EcCCC
Confidence 99986
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=7.1e-07 Score=78.12 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=65.5
Q ss_pred CCeEEEEcccHh-HHHHHHHHHHCCCeEEEEeCCccch----hhHHhCCCcc-----C--CCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKY-----Q--PSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~i-G~~la~~l~~~g~~V~~~d~~~~~~----~~~~~~g~~~-----~--~~~~~~~~~aDivv~~~p~~ 138 (290)
++++.|||.|.| |+.+|+.|...|..|++++|+..+. +.+....... + .++++.++++|+||.+++.+
T Consensus 177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p 256 (320)
T 1edz_A 177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSE 256 (320)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCT
T ss_pred CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECCCCC
Confidence 899999999976 9999999999999999999984332 2221110111 2 46888999999999999764
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
. .++ . .+++++|+++||++..
T Consensus 257 ~---~vI--~---~e~vk~GavVIDVgi~ 277 (320)
T 1edz_A 257 N---YKF--P---TEYIKEGAVCINFACT 277 (320)
T ss_dssp T---CCB--C---TTTSCTTEEEEECSSS
T ss_pred c---cee--C---HHHcCCCeEEEEcCCC
Confidence 3 124 2 3457899999999754
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.7e-06 Score=77.95 Aligned_cols=110 Identities=21% Similarity=0.287 Sum_probs=74.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHH----------CCCeE-EEEeCCccchhhHHhCCCccCCCHHHHhhc--CCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK----------AGCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~----------~g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivv~~~p~ 137 (290)
..+|||||+|.||+.+++.+.. .+.+| .++|+++++.+.+. .+...++++++++++ .|+|++++|.
T Consensus 10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve~tp~ 88 (444)
T 3mtj_A 10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVELIGG 88 (444)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEECCCS
T ss_pred cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEEcCCC
Confidence 4689999999999999987753 24454 47788877655442 245667899999974 7999999986
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEecCC-ChhHHHHHHHHHHHcCCcEE
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s~~-~~~~~~~l~~~l~~~~~~~~ 187 (290)
+......+ ...++.|..++-..-. .....++|.+..++++..+.
T Consensus 89 ~~~h~~~~------~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~ 133 (444)
T 3mtj_A 89 LEPARELV------MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVT 133 (444)
T ss_dssp STTHHHHH------HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred chHHHHHH------HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEE
Confidence 33333333 3556788887743221 11223577777788887763
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.23 E-value=3e-06 Score=70.34 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=54.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCcc----CCC---HHHH-hhcCCeEEEEeCChhHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY----QPS---PDEV-AASCDVTFAMLADPESA 141 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~----~~~---~~~~-~~~aDivv~~~p~~~~~ 141 (290)
|+|.|+|+|.+|+.+++.|...|++|.++|+++++.+.+.+ .+... ..+ +.++ ++++|+|++++|.+...
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n 79 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN 79 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH
Confidence 57999999999999999999999999999999988777654 34321 112 2232 56799999999876543
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.5e-06 Score=74.21 Aligned_cols=94 Identities=11% Similarity=0.081 Sum_probs=63.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhh----HHh----C--C--CccCCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LIS----L--G--AKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~----~~~----~--g--~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
|||+|||+|.+|.+++..|...|+ +|.+||+++++.+. +.+ . . +...++ .+.++++|+|+++.+.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence 589999999999999999998887 89999999876541 111 1 1 222345 7789999999999764
Q ss_pred hh---H--------HHHHhcccccccccCCCCCEEEEecC
Q 022909 138 PE---S--------AMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 138 ~~---~--------~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+. . ...++..-.+.+....|+++++++|+
T Consensus 80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 31 1 11222110112334478899999863
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.7e-06 Score=74.12 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=51.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhh----HHh------CCC--ccCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDP----LIS------LGA--KYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~----~~~------~g~--~~~~~~~~~~~~aDivv~~~p~ 137 (290)
.+||+|||+|.+|..++..|...|+ +|.++|+++++.+. +.+ ... ..+++. +.+++||+||++.+.
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag~ 85 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAGV 85 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccCc
Confidence 5799999999999999999999998 99999999876532 111 122 223455 788999999999753
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=2.8e-06 Score=71.82 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=72.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeE-EEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
.|||+++|+|+||+.+++. . ++++ .+|+ ++..++ |+..+++++++++++|+|+.|. ..+.++...
T Consensus 12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel---gv~a~~d~d~lla~pD~VVe~A-~~~av~e~~---- 77 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI---PGVVRLDEFQVPSDVSTVVECA-SPEAVKEYS---- 77 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC---SSSEECSSCCCCTTCCEEEECS-CHHHHHHHH----
T ss_pred cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc---CceeeCCHHHHhhCCCEEEECC-CHHHHHHHH----
Confidence 6999999999999999998 4 7776 5666 343333 6666788999998999999986 445555433
Q ss_pred cccccCCCCCEEEEecCCChhHH---HHHHHHHHHcCCcE
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTS---KLINGHIKATGASF 186 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~---~~l~~~l~~~~~~~ 186 (290)
.+.|+.|.-+|-+|.+...+. +.|.++.++++..+
T Consensus 78 --~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l 115 (253)
T 1j5p_A 78 --LQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARV 115 (253)
T ss_dssp --HHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEE
T ss_pred --HHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeE
Confidence 456788888888876644433 56666666666554
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=4.6e-06 Score=73.40 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=48.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhH-Hh--CC------CccCCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL-IS--LG------AKYQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~-~~--~g------~~~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
.+||+|||+|.+|..++..+...|. +|.++|.++++.+.. .+ .. +....+..+.+++||+|+++.+.+.
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~ 86 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR 86 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 4799999999999999999999887 899999997665431 11 11 1111223566899999999988653
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.3e-06 Score=74.47 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=63.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhh----HHhC------CCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LISL------GAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~----~~~~------g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
.+||+|||+|.||..++..|+..|+ +|.++|+++++.+. +.+. ++...++..+.+++||+||++.+.+
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p 84 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGAN 84 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccC
Confidence 5899999999999999999998887 89999998876544 3221 2222233346789999999998643
Q ss_pred h---H--------HHHHhcccccccccCCCCCEEEEecC
Q 022909 139 E---S--------AMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ~---~--------~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
. . ...++..-.+.+....|+++++++|.
T Consensus 85 ~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 85 QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 1 1 11112100112233467889998864
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2e-06 Score=79.33 Aligned_cols=110 Identities=22% Similarity=0.218 Sum_probs=70.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-C-Cc----cCC---CHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G-AK----YQP---SPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g-~~----~~~---~~~~~~~~aDivv~~~p~~~~~ 141 (290)
+++|+|+|+|.||+.+++.|...|++|.+++|++++.+.+.+. + +. ... +++++++++|+|+.++|.....
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~~ 82 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA 82 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccch
Confidence 5889999999999999999999999999999998776655431 1 11 112 3446778999999999864322
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.+. ...++++..+++.+...+ ....+.++.++.|+.++.
T Consensus 83 -~i~------~a~l~~g~~vvd~~~~~~-~~~~l~~aA~~aGv~~i~ 121 (450)
T 1ff9_A 83 -TVI------KSAIRQKKHVVTTSYVSP-AMMELDQAAKDAGITVMN 121 (450)
T ss_dssp -HHH------HHHHHHTCEEEESSCCCH-HHHHTHHHHHHTTCEEEC
T ss_pred -HHH------HHHHhCCCeEEEeecccH-HHHHHHHHHHHCCCeEEe
Confidence 111 122334556666543232 234555666666665544
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.2e-06 Score=72.25 Aligned_cols=115 Identities=16% Similarity=0.160 Sum_probs=72.4
Q ss_pred CCCeEEEEc-ccHhHHHHHHHHHHC-CCeEE-EEeCCccc-----hhhHH---hCCCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 70 LPGRIGFLG-MGIMGTPMAQNLLKA-GCDVT-VWNRTKSK-----CDPLI---SLGAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 70 ~~~~IgiiG-~G~iG~~la~~l~~~-g~~V~-~~d~~~~~-----~~~~~---~~g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
++.||+|+| +|+||+.+++.+... ++++. ++|+++.. ..++. ..|+..++++++++.++|+||-..+ +
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~-p 98 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ-P 98 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC-H
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC-H
Confidence 367999999 999999999998754 67754 66886432 11221 2467778899999999999987764 4
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChh-HHHHHHHHHHHcCCcEEeCccCC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-TSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~-~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
..+...+ ...++.|.-+|-.+++-.. ..+.|.++.+ .+.++-+|+|.
T Consensus 99 ~a~~~~~------~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~--~~~~~~a~N~S 146 (288)
T 3ijp_A 99 QASVLYA------NYAAQKSLIHIIGTTGFSKTEEAQIADFAK--YTTIVKSGNMS 146 (288)
T ss_dssp HHHHHHH------HHHHHHTCEEEECCCCCCHHHHHHHHHHHT--TSEEEECSCCC
T ss_pred HHHHHHH------HHHHHcCCCEEEECCCCCHHHHHHHHHHhC--cCCEEEECCCc
Confidence 4444433 2334556666655555332 2334444433 35556666653
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.19 E-value=9.6e-07 Score=76.28 Aligned_cols=109 Identities=15% Similarity=0.037 Sum_probs=75.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC-CCccCCCHHHHhhcCCeEEEEeCChhH--HHH-Hh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPES--AMD-VA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivv~~~p~~~~--~~~-~~ 145 (290)
++++.|+|+|.+|++++..|...|. +|++++|++++.+.+++. .....+++++ + ++|+||.++|.... ... .+
T Consensus 122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~pi 199 (282)
T 3fbt_A 122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGESPV 199 (282)
T ss_dssp TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTCCSS
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCccCCC
Confidence 7899999999999999999999998 899999999887766542 1111123333 4 89999999986321 110 11
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
. .+.++++.+++|+.-.+..+ .+.++.++.|+..++
T Consensus 200 --~---~~~l~~~~~v~DlvY~P~~T--~ll~~A~~~G~~~~~ 235 (282)
T 3fbt_A 200 --D---KEVVAKFSSAVDLIYNPVET--LFLKYARESGVKAVN 235 (282)
T ss_dssp --C---HHHHTTCSEEEESCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred --C---HHHcCCCCEEEEEeeCCCCC--HHHHHHHHCcCeEeC
Confidence 1 23467889999986544332 456666777766654
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=98.18 E-value=4.1e-06 Score=71.43 Aligned_cols=74 Identities=16% Similarity=0.282 Sum_probs=61.9
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||.|. +|+.+|..|...|..|++++++. .++++.++++|+||.+++.+. ++ .
T Consensus 150 Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t--------------~~L~~~~~~ADIVI~Avg~p~----~I--~- 208 (276)
T 3ngx_A 150 ENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT--------------KDIGSMTRSSKIVVVAVGRPG----FL--N- 208 (276)
T ss_dssp SCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHHSSEEEECSSCTT----CB--C-
T ss_pred CCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc--------------ccHHHhhccCCEEEECCCCCc----cc--c-
Confidence 89999999986 89999999999999999998642 478889999999999998743 34 2
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.+++|+|+++||++..
T Consensus 209 --~~~vk~GavVIDvgi~ 224 (276)
T 3ngx_A 209 --REMVTPGSVVIDVGIN 224 (276)
T ss_dssp --GGGCCTTCEEEECCCE
T ss_pred --HhhccCCcEEEEeccC
Confidence 3557999999999753
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.17 E-value=2.9e-06 Score=78.47 Aligned_cols=67 Identities=19% Similarity=0.329 Sum_probs=50.6
Q ss_pred CCeEEEEcccHh--HHHHHHHHHHC----CCeEEEEeCCccchhhHHh--------C----CCccCCCHHHHhhcCCeEE
Q 022909 71 PGRIGFLGMGIM--GTPMAQNLLKA----GCDVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVTF 132 (290)
Q Consensus 71 ~~~IgiiG~G~i--G~~la~~l~~~----g~~V~~~d~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDivv 132 (290)
++||+|||+|.| |.+++..+... |.+|.+||+++++.+.... . .+..++++++.+++||+||
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI 82 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 82 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence 579999999997 56667777643 7899999999876544221 1 1334568888899999999
Q ss_pred EEeCC
Q 022909 133 AMLAD 137 (290)
Q Consensus 133 ~~~p~ 137 (290)
+++|.
T Consensus 83 iaagv 87 (480)
T 1obb_A 83 NTAMV 87 (480)
T ss_dssp ECCCT
T ss_pred ECCCc
Confidence 99974
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=6.2e-06 Score=72.30 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=76.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC---ccchhhHHh-----CCC----ccCCC---HHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT---KSKCDPLIS-----LGA----KYQPS---PDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~---~~~~~~~~~-----~g~----~~~~~---~~~~~~~aDivv~~ 134 (290)
++++.|+|+|.+|++++..|...|. +|.+++|+ .++.+++.+ .+. ...++ +.+.+.++|+||.+
T Consensus 154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINa 233 (315)
T 3tnl_A 154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNA 233 (315)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEEC
Confidence 7899999999999999999999998 89999999 666555443 121 11223 44567899999999
Q ss_pred eCChhHHH--H-HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 135 LADPESAM--D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 135 ~p~~~~~~--~-~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+|..-.-. . .+ .....++++.+++|+.-.+..+ .+.+..++.|+..++
T Consensus 234 Tp~Gm~~~~~~~p~----~~~~~l~~~~~V~DlvY~P~~T--~ll~~A~~~G~~~~~ 284 (315)
T 3tnl_A 234 TGVGMKPFEGETLL----PSADMLRPELIVSDVVYKPTKT--RLLEIAEEQGCQTLN 284 (315)
T ss_dssp SSTTSTTSTTCCSC----CCGGGCCTTCEEEESCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred ccCCCCCCCCCCCC----CcHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeEeC
Confidence 98532211 0 01 0134578899999996654432 455666677766554
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.17 E-value=4.6e-06 Score=72.85 Aligned_cols=91 Identities=10% Similarity=0.077 Sum_probs=60.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccch---hhHHh---CCCccCCCHHHHhhcCCeEEEEeC------
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKC---DPLIS---LGAKYQPSPDEVAASCDVTFAMLA------ 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~---~~~~~---~g~~~~~~~~~~~~~aDivv~~~p------ 136 (290)
.+||+|||+|.||..++..+...|+ +|.++|++++.. ..+.. ..+....++ +.+++||+||++..
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~ 92 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ 92 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence 5789999999999999999998888 999999987421 11221 123444577 66899999999962
Q ss_pred -------ChhHH-HHHhcccccccccCCCCCEEEEecC
Q 022909 137 -------DPESA-MDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 137 -------~~~~~-~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.+... +.++ +++.+ ..|++++|++|+
T Consensus 93 tR~dl~~~n~~i~~~i~---~~i~~-~~p~a~iiv~sN 126 (303)
T 2i6t_A 93 SYLDVVQSNVDMFRALV---PALGH-YSQHSVLLVASQ 126 (303)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHH-HTTTCEEEECSS
T ss_pred CHHHHHHHHHHHHHHHH---HHHHH-hCCCeEEEEcCC
Confidence 22222 2222 22222 348889888876
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=98.17 E-value=6.3e-06 Score=74.32 Aligned_cols=110 Identities=13% Similarity=0.127 Sum_probs=78.4
Q ss_pred CCeEEEEc-ccHhHHH-HH----HHHHHCC-CeE----------EEEeCCccchhhHHh-CCC-ccCCCHHHHhhc--CC
Q 022909 71 PGRIGFLG-MGIMGTP-MA----QNLLKAG-CDV----------TVWNRTKSKCDPLIS-LGA-KYQPSPDEVAAS--CD 129 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~-la----~~l~~~g-~~V----------~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~~--aD 129 (290)
..|||||| +|.||.. .+ ..+...+ ..+ .++|+++++.+.+++ .|+ ..++++++++++ .|
T Consensus 6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD 85 (383)
T 3oqb_A 6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDT 85 (383)
T ss_dssp EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCC
T ss_pred eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCC
Confidence 47899999 9999998 77 7776544 222 489999988877765 677 367899999976 89
Q ss_pred eEEEEeCChhHHHHHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcEE
Q 022909 130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 130 ivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
+|++++|...+...+ ...++.|+.++--= .....+.+++.+..++.++.+.
T Consensus 86 ~V~i~tp~~~h~~~~-------~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~ 138 (383)
T 3oqb_A 86 MFFDAATTQARPGLL-------TQAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKHG 138 (383)
T ss_dssp EEEECSCSSSSHHHH-------HHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCchHHHHHH-------HHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 999999876554433 34456676665211 3455667788888888776543
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=3e-06 Score=78.46 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=76.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEEEEeCCccchhhHHhC-CCcc----CC---CHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISL-GAKY----QP---SPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~~~d~~~~~~~~~~~~-g~~~----~~---~~~~~~~~aDivv~~~p~~~~~ 141 (290)
+++|.|+|+|.+|+.++..|... |++|.+++|++++.+.+.+. ++.. .. ++.++++++|+||.++|....
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~- 101 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFH- 101 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGGH-
T ss_pred CCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhhh-
Confidence 68999999999999999999987 78999999998877766542 3321 11 345677899999999986432
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
..+. ...++++..+++.+...+ ....+.+..++.|+.+++
T Consensus 102 ~~v~------~a~l~~g~~vvd~~~~~p-~~~~Ll~~Ak~aGv~~i~ 141 (467)
T 2axq_A 102 PNVV------KSAIRTKTDVVTSSYISP-ALRELEPEIVKAGITVMN 141 (467)
T ss_dssp HHHH------HHHHHHTCEEEECSCCCH-HHHHHHHHHHHHTCEEEC
T ss_pred HHHH------HHHHhcCCEEEEeecCCH-HHHHHHHHHHHcCCEEEe
Confidence 2222 123456777777754333 345666666666666554
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.16 E-value=4.5e-06 Score=65.21 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=51.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc-cchhhHHh---CCCccC----CC---HHHH-hhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK-SKCDPLIS---LGAKYQ----PS---PDEV-AASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~-~~~~~~~~---~g~~~~----~~---~~~~-~~~aDivv~~~p~~ 138 (290)
.++|.|+|+|.+|+.+++.|...|++|.+.++++ ++.+.+.+ .|+... .+ +.++ ++++|.|+++++.+
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND 82 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence 5789999999999999999999999999999984 43333332 233211 12 3333 67899999998775
Q ss_pred hHH
Q 022909 139 ESA 141 (290)
Q Consensus 139 ~~~ 141 (290)
...
T Consensus 83 ~~n 85 (153)
T 1id1_A 83 ADN 85 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.4e-06 Score=74.80 Aligned_cols=107 Identities=9% Similarity=-0.037 Sum_probs=73.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCCc-cchhhHHh----CC--CccCCCHHHHhhc--CCeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTK-SKCDPLIS----LG--AKYQPSPDEVAAS--CDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~~-~~~~~~~~----~g--~~~~~~~~~~~~~--aDivv~~~p~~~~ 140 (290)
++||||||+|.+|...++.+ ..+.+|. ++|+++ ++.+.+++ .+ ...++++++++++ .|+|++++|...+
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H 80 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLN 80 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHH
T ss_pred ceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchH
Confidence 58999999999999888777 5567765 788887 45544433 34 3677899999975 8999999987555
Q ss_pred HHHHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCc
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGAS 185 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~ 185 (290)
..... ..++.|+.++--= .....+.+++.++.++.+..
T Consensus 81 ~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 120 (337)
T 3ip3_A 81 GKILL-------EALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNE 120 (337)
T ss_dssp HHHHH-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 43332 3345565544211 33455677888888887765
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.4e-06 Score=72.74 Aligned_cols=95 Identities=13% Similarity=0.194 Sum_probs=62.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhh----HHh------CCCccC-CCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LIS------LGAKYQ-PSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~----~~~------~g~~~~-~~~~~~~~~aDivv~~~p~~ 138 (290)
|||+|||+|.||..++..++..|. +|.++|+++++.+. +.+ ...... ++..+.+++||+|+++.+.+
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 689999999999999999998886 89999999876442 221 122222 24567789999999998654
Q ss_pred hH-----------HHHHhcccccccccCCCCCEEEEecC
Q 022909 139 ES-----------AMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ~~-----------~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.. ...++..-.+.+....|++++++.|+
T Consensus 81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 21 11222110112333468889999864
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=98.15 E-value=5e-06 Score=74.73 Aligned_cols=108 Identities=15% Similarity=0.125 Sum_probs=72.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC--------CeE-EEEeCCccchhhHHh-CCC-ccCCCHHHHhhc--CCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG--------CDV-TVWNRTKSKCDPLIS-LGA-KYQPSPDEVAAS--CDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g--------~~V-~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~~--aDivv~~~p~~ 138 (290)
-+|||||+|.||+..++.+.... .+| .++|+++++.+.+++ .|+ ..++++++++++ .|+|++++|..
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~ 86 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD 86 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence 58999999999999888876532 244 588999988877665 565 456899999975 79999999986
Q ss_pred hHHHHHhcccccccccCCCCCEEEEec--CCChhHHHHHHHH---HHHcCCcE
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGH---IKATGASF 186 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~---l~~~~~~~ 186 (290)
.+....+ ..++.|+.++--= .....+.++|.+. .++.++.+
T Consensus 87 ~H~~~~~-------~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~ 132 (390)
T 4h3v_A 87 SHAEIAI-------AALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRS 132 (390)
T ss_dssp GHHHHHH-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHH-------HHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCce
Confidence 6655443 3455666554221 2334455566443 44455443
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=7.6e-06 Score=72.00 Aligned_cols=95 Identities=8% Similarity=0.117 Sum_probs=62.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhH----Hh------CCCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----IS------LGAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~----~~------~g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
.+||+|||+|.+|..++..+...|. +|.++|+++++.+.. .+ ..+....+..+.+++||+|+++.+.+
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~ 85 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAA 85 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCC
Confidence 5799999999999999999988774 899999987654421 11 11222224466789999999998754
Q ss_pred hH-----------HHHHhcccccccccCCCCCEEEEec
Q 022909 139 ES-----------AMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 139 ~~-----------~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
.. ...++..-.+......|++++|+.|
T Consensus 86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 86 QKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 21 1122210001122337899999875
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=98.15 E-value=6.8e-06 Score=70.54 Aligned_cols=74 Identities=23% Similarity=0.312 Sum_probs=61.9
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||.|. +|+.+|+.|...|..|++++++. .++.+.++++|+||.+++.+. ++ .
T Consensus 159 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~----lI--~- 217 (288)
T 1b0a_A 159 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPG----FI--P- 217 (288)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTT----CB--C-
T ss_pred CCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCCcC----cC--C-
Confidence 89999999997 59999999999999999997543 367888999999999998644 34 2
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.+++|+|+++||++..
T Consensus 218 --~~~vk~GavVIDVgi~ 233 (288)
T 1b0a_A 218 --GDWIKEGAIVIDVGIN 233 (288)
T ss_dssp --TTTSCTTCEEEECCCE
T ss_pred --HHHcCCCcEEEEccCC
Confidence 3457999999999753
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=4.8e-06 Score=73.23 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=49.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhH----HhC------CCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----ISL------GAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~----~~~------g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
.+||+|||+|.||..++..++..|. +|.++|+++++.+.. .+. ......+..+.+++||+|+++.|.+
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~ 85 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN 85 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence 5799999999999999999987775 899999997644321 111 1111123456789999999997654
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.6e-06 Score=72.06 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=50.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhh----HHh------CCCcc--CCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDP----LIS------LGAKY--QPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~----~~~------~g~~~--~~~~~~~~~~aDivv~~~p~ 137 (290)
.+||+|||+|.||..++..++..|+ +|.++|+++++.+. +.+ ..... .++ .+.+++||+||++.+.
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag~ 83 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAGV 83 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCCc
Confidence 4899999999999999999998887 99999999876542 221 12222 234 4688999999999754
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=8.3e-06 Score=71.75 Aligned_cols=96 Identities=10% Similarity=0.162 Sum_probs=62.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHH----hC-----CCccCCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----SL-----GAKYQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~----~~-----g~~~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
.+||+|||+|.+|..++..+...+. ++.++|+++++.+... +. .+....+..+.+++||+|+++.+.+.
T Consensus 5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~ 84 (318)
T 1ez4_A 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ 84 (318)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence 5899999999999999999988776 8999999876654311 11 12222244667899999999987543
Q ss_pred HH-----------HHHhcccccccccCCCCCEEEEecC
Q 022909 140 SA-----------MDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 140 ~~-----------~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.- ..++..-.+......|++++++.|.
T Consensus 85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (318)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 21 1222100011223368899998843
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.2e-06 Score=71.73 Aligned_cols=73 Identities=29% Similarity=0.412 Sum_probs=60.5
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHH--HHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPD--EVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~--~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
++++.|||.|. +|+.+|..|...|..|++++++.. +++ +.++++|+||.+++.+. ++
T Consensus 165 Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~p~----~I-- 224 (300)
T 4a26_A 165 GKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQPG----YV-- 224 (300)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCCTT----CB--
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCCCC----CC--
Confidence 89999999987 799999999999999999987432 344 88999999999998743 34
Q ss_pred cccccccCCCCCEEEEecC
Q 022909 148 KHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~ 166 (290)
. .+++|+|+++||++.
T Consensus 225 ~---~~~vk~GavVIDvgi 240 (300)
T 4a26_A 225 K---GEWIKEGAAVVDVGT 240 (300)
T ss_dssp C---GGGSCTTCEEEECCC
T ss_pred c---HHhcCCCcEEEEEec
Confidence 2 355799999999965
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.9e-06 Score=70.52 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=69.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHC-CCeEE-EEeCCccch-----hhHH--hCCCccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKA-GCDVT-VWNRTKSKC-----DPLI--SLGAKYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~-----~~~~--~~g~~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
++||+|+| +|+||+.+++.+... ++++. ++|+++... .++. ..++...++++++++++|+||-+++ +..
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~-p~a 85 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL-PEG 85 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC-HHH
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC-HHH
Confidence 48999999 899999999998865 56765 468874321 1111 1256677899999999999998875 444
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhH-HHHHHHHHHHcCCcEEeCccC
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDT-SKLINGHIKATGASFLEAPVS 192 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~-~~~l~~~l~~~~~~~~~~p~~ 192 (290)
+...+ ...++.|..+|-.+++-... .+.|.++.+ ...++-.|+|
T Consensus 86 ~~~~~------~~al~~G~~vVigTTG~s~~~~~~L~~aa~--~~~vv~a~N~ 130 (272)
T 4f3y_A 86 TLVHL------DAALRHDVKLVIGTTGFSEPQKAQLRAAGE--KIALVFSANM 130 (272)
T ss_dssp HHHHH------HHHHHHTCEEEECCCCCCHHHHHHHHHHTT--TSEEEECSCC
T ss_pred HHHHH------HHHHHcCCCEEEECCCCCHHHHHHHHHHhc--cCCEEEECCC
Confidence 44443 23345566666554543222 223333322 2445555554
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=4.1e-06 Score=76.35 Aligned_cols=89 Identities=20% Similarity=0.309 Sum_probs=65.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC----CCHH---HH-hhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPD---EV-AASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~---~~-~~~aDivv~~~p~~~~~~ 142 (290)
+++|.|+|+|++|+.+++.|...|++|++.|+++++.+.+.+.|.... ++.+ ++ ++++|+|+++++.+....
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~ 83 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL 83 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence 578999999999999999999999999999999999888877665422 2222 22 467899999998766554
Q ss_pred HHhcccccccccCCCCCEEEE
Q 022909 143 DVACGKHGAASGMGPGKGYVD 163 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin 163 (290)
.+. .....+.++..+|-
T Consensus 84 ~i~----~~ar~~~p~~~Iia 100 (413)
T 3l9w_A 84 QLT----EMVKEHFPHLQIIA 100 (413)
T ss_dssp HHH----HHHHHHCTTCEEEE
T ss_pred HHH----HHHHHhCCCCeEEE
Confidence 444 23445556644443
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7.7e-06 Score=71.15 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=73.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHH----CCCeEE-EEeCCccchhhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK----AGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~----~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~ 143 (290)
.++|||||+|.||+..++.+.. .+.++. ++|++... ++.++. ..+++++++ +.|+|++++|...+...
T Consensus 7 ~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~ 81 (294)
T 1lc0_A 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----SLDEVR-QISLEDALRSQEIDVAYICSESSSHEDY 81 (294)
T ss_dssp SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----EETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHH
T ss_pred cceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH----HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHH
Confidence 5799999999999999988864 355654 67775421 123454 368999997 57999999987665444
Q ss_pred HhcccccccccCCCCCEE-EEe-cCCChhHHHHHHHHHHHcCCcEEeCc
Q 022909 144 VACGKHGAASGMGPGKGY-VDV-STVDGDTSKLINGHIKATGASFLEAP 190 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l-in~-s~~~~~~~~~l~~~l~~~~~~~~~~p 190 (290)
.. ..++.|+.+ +.- -.....+.+++.+..++.+..+....
T Consensus 82 ~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~ 123 (294)
T 1lc0_A 82 IR-------QFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEH 123 (294)
T ss_dssp HH-------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 33 345566644 432 23456677888888888877655433
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.9e-06 Score=70.07 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=61.0
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||.|. +|+.+|..|...|..|++++++. .++++.++++|+||.+++.+. ++ .
T Consensus 161 Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~----~I--~- 219 (285)
T 3l07_A 161 GAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPN----FI--T- 219 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCCTT----CB--C-
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHhcccCCEEEECCCCCC----CC--C-
Confidence 89999999988 69999999999999999987642 367888999999999998633 34 2
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++|+|+++||++.
T Consensus 220 --~~~vk~GavVIDvgi 234 (285)
T 3l07_A 220 --ADMVKEGAVVIDVGI 234 (285)
T ss_dssp --GGGSCTTCEEEECCC
T ss_pred --HHHcCCCcEEEEecc
Confidence 356799999999964
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.09 E-value=7.4e-06 Score=70.23 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=61.6
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||.|. +|+.+|..|...|..|++++++. .++++.++++|+||.+++.+. ++ .
T Consensus 160 Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~----~I--~- 218 (285)
T 3p2o_A 160 GKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVN----LL--R- 218 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHTTCSEEEECSSCTT----CB--C-
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhhcCCEEEECCCCCC----cC--C-
Confidence 89999999987 69999999999999999998642 367788999999999998632 34 2
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.+++|+|+++||++..
T Consensus 219 --~~~vk~GavVIDVgi~ 234 (285)
T 3p2o_A 219 --SDMVKEGVIVVDVGIN 234 (285)
T ss_dssp --GGGSCTTEEEEECCCE
T ss_pred --HHHcCCCeEEEEeccC
Confidence 3567999999999643
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=8.8e-06 Score=70.25 Aligned_cols=75 Identities=23% Similarity=0.273 Sum_probs=62.6
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||.|+ +|+.+|+.|...|..|++++++ ..++.+.++++|+||.+++.+. ++ .
T Consensus 165 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~----~I--~- 223 (301)
T 1a4i_A 165 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPE----MV--K- 223 (301)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTT----CB--C-
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCCcc----cC--C-
Confidence 89999999996 6999999999999999999754 2478889999999999998744 34 2
Q ss_pred cccccCCCCCEEEEecCCC
Q 022909 150 GAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~ 168 (290)
.+++|+|+++||++...
T Consensus 224 --~~~vk~GavVIDVgi~~ 240 (301)
T 1a4i_A 224 --GEWIKPGAIVIDCGINY 240 (301)
T ss_dssp --GGGSCTTCEEEECCCBC
T ss_pred --HHHcCCCcEEEEccCCC
Confidence 34578999999997644
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=98.09 E-value=8.8e-06 Score=69.57 Aligned_cols=74 Identities=19% Similarity=0.337 Sum_probs=61.5
Q ss_pred CCeEEEEcccHh-HHHHHHHHHHC--CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLGMGIM-GTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~G~i-G~~la~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
++++.|||.|.+ |+.+|+.|... |..|++++++. .++.+.++++|+||.+++.+. ++
T Consensus 158 gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~----~I-- 217 (281)
T 2c2x_A 158 GAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAH----LL-- 217 (281)
T ss_dssp TCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTT----CB--
T ss_pred CCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCCc----cc--
Confidence 899999999985 99999999998 89999987653 378888999999999998654 34
Q ss_pred cccccccCCCCCEEEEecCC
Q 022909 148 KHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~ 167 (290)
. .+++|+|+++||++..
T Consensus 218 ~---~~~vk~GavVIDVgi~ 234 (281)
T 2c2x_A 218 T---ADMVRPGAAVIDVGVS 234 (281)
T ss_dssp C---GGGSCTTCEEEECCEE
T ss_pred C---HHHcCCCcEEEEccCC
Confidence 2 3457899999999753
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.3e-06 Score=77.49 Aligned_cols=65 Identities=11% Similarity=0.200 Sum_probs=52.1
Q ss_pred CCeEEEEcccHh--HHHHHHHHHH----CCCeEEEEeCCccchhhHHhC---------CCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIM--GTPMAQNLLK----AGCDVTVWNRTKSKCDPLISL---------GAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~i--G~~la~~l~~----~g~~V~~~d~~~~~~~~~~~~---------g~~~~~~~~~~~~~aDivv~~~ 135 (290)
++||+|||.|.+ |..++..+.. .| +|.+||+++++.+..... .+..++++++++++||+||+++
T Consensus 5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~ai 83 (450)
T 3fef_A 5 QIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISI 83 (450)
T ss_dssp CEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEECC
T ss_pred CCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEecc
Confidence 579999999997 6889988875 46 999999998765543321 2445678999999999999999
Q ss_pred C
Q 022909 136 A 136 (290)
Q Consensus 136 p 136 (290)
+
T Consensus 84 r 84 (450)
T 3fef_A 84 L 84 (450)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=8.7e-06 Score=70.59 Aligned_cols=109 Identities=23% Similarity=0.204 Sum_probs=74.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~~~ 147 (290)
.++|+|+|+ |++|+.+++.+...|+++ ++..+|.+... ...|+..+.+++++.+ ..|++++++|. +.+..++
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~-v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~-- 81 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTKI-VAGVTPGKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAA-- 81 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTTC-EETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHH--
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCeE-EEEECCCCCCc-eECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHH--
Confidence 588999998 999999999999889983 34444433110 1246777889999988 89999999976 4455555
Q ss_pred cccccccCCCCC-EEEEecCC-ChhHHHHHHHHHHHcCCcEEe
Q 022909 148 KHGAASGMGPGK-GYVDVSTV-DGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 148 ~~~~~~~~~~~~-~lin~s~~-~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+ .|. .+|..+.+ ...+.+++.+..++.++.++.
T Consensus 82 -~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vig 120 (288)
T 1oi7_A 82 -LEAAH---AGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIG 120 (288)
T ss_dssp -HHHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred -HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 11222 222 24445544 344567888888888887664
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=69.34 Aligned_cols=112 Identities=14% Similarity=0.121 Sum_probs=76.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC---ccchhhHHh-----CCCc----cCCCH---HHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT---KSKCDPLIS-----LGAK----YQPSP---DEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~---~~~~~~~~~-----~g~~----~~~~~---~~~~~~aDivv~~ 134 (290)
++++.|+|+|.+|++++..|...|. +|.+++|+ .++.+.+.+ .+.. ...++ .+.+.++|+||.+
T Consensus 148 gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINa 227 (312)
T 3t4e_A 148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNG 227 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEEC
Confidence 7899999999999999999999998 89999999 665555443 1211 12343 5567899999999
Q ss_pred eCChhHHHHHhcccccc---cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 135 LADPESAMDVACGKHGA---ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 135 ~p~~~~~~~~~~~~~~~---~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+|....-.. ...+ .+.++++.+++|+.-.+..+ .+.+..++.|...++
T Consensus 228 Tp~Gm~~~~----~~~~~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 278 (312)
T 3t4e_A 228 TKVGMKPLE----NESLIGDVSLLRPELLVTECVYNPHMT--KLLQQAQQAGCKTID 278 (312)
T ss_dssp SSTTSTTST----TCCSCCCGGGSCTTCEEEECCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred CcCCCCCCC----CCcccCCHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeEEC
Confidence 986431100 0011 24577889999996554332 455666777766554
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=8.3e-06 Score=71.86 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=61.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhH----Hh-----CCCccCCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----IS-----LGAKYQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~----~~-----~g~~~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
++||+|||+|.||..++..|...|. ++.++|+++++.+.. .+ .++....+..+.+++||+||++...+.
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~~~ 88 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ 88 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCCCC
Confidence 6899999999999999999998887 899999987765422 11 122223344567899999999875432
Q ss_pred ---HHH-HHhccccc-------ccccCCCCCEEEEecC
Q 022909 140 ---SAM-DVACGKHG-------AASGMGPGKGYVDVST 166 (290)
Q Consensus 140 ---~~~-~~~~~~~~-------~~~~~~~~~~lin~s~ 166 (290)
.++ .++..+.. .+....|+++++++|+
T Consensus 89 kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 89 KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp ---------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 112 11211111 1233457888998864
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-05 Score=69.11 Aligned_cols=75 Identities=25% Similarity=0.336 Sum_probs=61.8
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||.|. +|+.+|..|...|..|+++.++. .++++.++++|+||.+++.+. ++ .
T Consensus 161 Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~p~----~I--~- 219 (286)
T 4a5o_A 161 GMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGKPG----LV--K- 219 (286)
T ss_dssp TCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCCTT----CB--C-
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCCCC----CC--C-
Confidence 89999999877 79999999999999999987642 367788999999999998633 34 2
Q ss_pred cccccCCCCCEEEEecCCC
Q 022909 150 GAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~ 168 (290)
.+++|+|+++||++...
T Consensus 220 --~~~vk~GavVIDvgi~~ 236 (286)
T 4a5o_A 220 --GEWIKEGAIVIDVGINR 236 (286)
T ss_dssp --GGGSCTTCEEEECCSCS
T ss_pred --HHHcCCCeEEEEecccc
Confidence 35679999999997543
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.02 E-value=3.5e-06 Score=73.08 Aligned_cols=110 Identities=16% Similarity=0.102 Sum_probs=73.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-C----------CccCCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G----------AKYQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g----------~~~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
++++.|+|.|.+|++++..|...| +|++++|+.++.+.+.+. + +.. .++.+.+.++|+||.++|...
T Consensus 128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~~~~~~DilVn~ag~~~ 205 (287)
T 1nvt_A 128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGVDIIINATPIGM 205 (287)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTCCEEEECSCTTC
T ss_pred CCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEE-eeHHHhhCCCCEEEECCCCCC
Confidence 689999999999999999999999 999999998776655431 0 011 122455678999999988643
Q ss_pred HHH--HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 140 SAM--DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 140 ~~~--~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
... .... . ..+.++++.+++|++..+. .+ .+.+..++.|..++
T Consensus 206 ~~~~~~~~~-~--~~~~l~~~~~v~Dv~y~p~-~t-~ll~~a~~~G~~~~ 250 (287)
T 1nvt_A 206 YPNIDVEPI-V--KAEKLREDMVVMDLIYNPL-ET-VLLKEAKKVNAKTI 250 (287)
T ss_dssp TTCCSSCCS-S--CSTTCCSSSEEEECCCSSS-SC-HHHHHHHTTTCEEE
T ss_pred CCCCCCCCC-C--CHHHcCCCCEEEEeeeCCc-cC-HHHHHHHHCCCEEe
Confidence 210 0000 0 1356788999999986432 22 35555565665543
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=71.16 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=51.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh---C------CCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS---L------GAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~---~------g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
.+||+|||+|.+|..++..+...+. ++.++|+++++.+.... . .+....+..+.+++||+|+++.+.+
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~ 87 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP 87 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 5899999999999999999987775 89999998766543211 1 1222224466789999999998754
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=1e-05 Score=71.00 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=60.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-C-CCe-EEEEeCCccc-hhhH-HhCCCc-cCCCHHHHhh-----cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-A-GCD-VTVWNRTKSK-CDPL-ISLGAK-YQPSPDEVAA-----SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~-g~~-V~~~d~~~~~-~~~~-~~~g~~-~~~~~~~~~~-----~aDivv~~~p~~~ 139 (290)
..+|||||+|.||+.+++.+.. . +.+ +.++|+++++ ...+ ++.|.. ..++.+++++ +.|+|++++|...
T Consensus 4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~~ 83 (312)
T 1nvm_B 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA 83 (312)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH
T ss_pred CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChHH
Confidence 5799999999999999999955 3 455 4578998877 4444 345664 3456777764 4799999998433
Q ss_pred HHHHHhcccccccccCCC--CCEEEEecC
Q 022909 140 SAMDVACGKHGAASGMGP--GKGYVDVST 166 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~--~~~lin~s~ 166 (290)
+.+... ..++. |..+++.+.
T Consensus 84 h~~~a~-------~al~a~~Gk~Vi~ekp 105 (312)
T 1nvm_B 84 HVQNEA-------LLRQAKPGIRLIDLTP 105 (312)
T ss_dssp HHHHHH-------HHHHHCTTCEEEECST
T ss_pred HHHHHH-------HHHHhCCCCEEEEcCc
Confidence 332222 22334 777777543
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.5e-05 Score=69.94 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=48.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc--cchhhH----Hh------CC--CccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK--SKCDPL----IS------LG--AKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~--~~~~~~----~~------~g--~~~~~~~~~~~~~aDivv~~~ 135 (290)
.+||+|||+|.||..+|..++..|+ +|.++|+++ ++.+.. .+ .. +...++ .+.+++||+||++.
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIiaa 86 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVITA 86 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEEeC
Confidence 4799999999999999999999999 999999983 332211 11 11 222334 45689999999997
Q ss_pred CC
Q 022909 136 AD 137 (290)
Q Consensus 136 p~ 137 (290)
..
T Consensus 87 g~ 88 (315)
T 3tl2_A 87 GI 88 (315)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=6.5e-06 Score=72.51 Aligned_cols=94 Identities=10% Similarity=-0.031 Sum_probs=63.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhH----HhC-------CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----ISL-------GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~----~~~-------g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
.+||+|||+|.||..+|..++..|+ +|.++|+++++.+.. .+. .+....+.++ +++||+||++...
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG~ 99 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAGA 99 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCCC
Confidence 5899999999999999999998887 899999987654432 110 1223456665 8999999998654
Q ss_pred hh-----------HHHHHhcc-cccccccCCCCCEEEEecC
Q 022909 138 PE-----------SAMDVACG-KHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 138 ~~-----------~~~~~~~~-~~~~~~~~~~~~~lin~s~ 166 (290)
+. ....++.. .++ +....|++++++.|+
T Consensus 100 p~kpG~tR~dll~~N~~I~k~i~~~-I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 100 RQQEGESRLNLVQRNVNIFKFIIPN-IVKHSPDCLKELHPE 139 (330)
T ss_dssp CCCSSCCTTGGGHHHHHHHHHHHHH-HHHHCTTCEEEECSS
T ss_pred CCCCCCCHHHHHHhhHHHHHHHHHH-HHhhCCCceEEeCCC
Confidence 31 11112200 012 223378899998864
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.8e-06 Score=75.78 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=70.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC---CeEEEEeCCccchhhHHhC-------CCcc-------CCCHHHHhhc--CCeEE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLISL-------GAKY-------QPSPDEVAAS--CDVTF 132 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g---~~V~~~d~~~~~~~~~~~~-------g~~~-------~~~~~~~~~~--aDivv 132 (290)
++|+|+|+|.||+.+++.|...| .+|.+++|++++.+.+.+. .+.. .+++++++++ +|+|+
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi 81 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL 81 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence 68999999999999999999988 3899999998887665431 1211 1345677777 89999
Q ss_pred EEeCChhHHHHHhcccccccccCCCCCEEEEecCCChh--------HHHHHHHHHHHcCCcEEe
Q 022909 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD--------TSKLINGHIKATGASFLE 188 (290)
Q Consensus 133 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~--------~~~~l~~~l~~~~~~~~~ 188 (290)
.+.|.... ..+. ...++.+..+++++..... ...++.+..++.|+.++.
T Consensus 82 n~ag~~~~-~~v~------~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~ 138 (405)
T 4ina_A 82 NIALPYQD-LTIM------EACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALL 138 (405)
T ss_dssp ECSCGGGH-HHHH------HHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEE
T ss_pred ECCCcccC-hHHH------HHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEE
Confidence 99875432 2333 1223455666665432221 123455555666665444
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.4e-05 Score=68.96 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=72.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC---------CCeEE-EEeCCccchhh------HHh--CCCccCC--CHHHHhhc--C
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA---------GCDVT-VWNRTKSKCDP------LIS--LGAKYQP--SPDEVAAS--C 128 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~---------g~~V~-~~d~~~~~~~~------~~~--~g~~~~~--~~~~~~~~--a 128 (290)
+.+|||||+|.||+.+++.+... +.+|. ++|+++.+.+. +.. ......+ ++++++++ .
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~i 81 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADY 81 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCC
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCC
Confidence 37899999999999999999764 45554 77887654321 111 1122333 89999874 8
Q ss_pred CeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChh-HHHHHHHHHHHcCCcEE
Q 022909 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-TSKLINGHIKATGASFL 187 (290)
Q Consensus 129 Divv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~-~~~~l~~~l~~~~~~~~ 187 (290)
|+|+.++|......+.. +-....++.|..++..+-.... ..++|.+..++++..++
T Consensus 82 DvVv~~tp~~~h~~~a~---~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~ 138 (327)
T 3do5_A 82 DVLIEASVTRVDGGEGV---NYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLM 138 (327)
T ss_dssp SEEEECCCCC----CHH---HHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEECCCCcccchhHH---HHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEE
Confidence 99999998754311110 1124567888888755332222 45677777778887665
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.97 E-value=8.4e-06 Score=75.01 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=51.0
Q ss_pred CCeEEEEcccHh-HHHHHHHHHHC-----CCeEEEEeCCc--cchhhHH--------hCC----CccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGMGIM-GTPMAQNLLKA-----GCDVTVWNRTK--SKCDPLI--------SLG----AKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~i-G~~la~~l~~~-----g~~V~~~d~~~--~~~~~~~--------~~g----~~~~~~~~~~~~~aDi 130 (290)
.+||+|||.|.+ |.+++..|... +.+|.+||+++ ++.+... ..+ +..+.++.+.+++||+
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~ 86 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 86 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence 479999999999 88888777763 56899999998 6644311 111 2334678889999999
Q ss_pred EEEEeCCh
Q 022909 131 TFAMLADP 138 (290)
Q Consensus 131 vv~~~p~~ 138 (290)
|+++.|..
T Consensus 87 VVitagv~ 94 (450)
T 1s6y_A 87 VTTQFRVG 94 (450)
T ss_dssp EEECCCTT
T ss_pred EEEcCCCC
Confidence 99999853
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1e-05 Score=66.84 Aligned_cols=91 Identities=15% Similarity=0.258 Sum_probs=61.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHH-HCCCeEEEEeCCcc-chhhHHh--CCC-------ccCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLL-KAGCDVTVWNRTKS-KCDPLIS--LGA-------KYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~-~~g~~V~~~d~~~~-~~~~~~~--~g~-------~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
+++|.|.| .|.||+.+++.|. ..|++|.+.+|+++ +.+.+.+ .++ ...++++++++++|+||.+....
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~ 84 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES 84 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence 46699999 5999999999999 89999999999987 6655531 111 11134566788999999887642
Q ss_pred -hHHHHHhcccccccccCC--CCCEEEEecCCC
Q 022909 139 -ESAMDVACGKHGAASGMG--PGKGYVDVSTVD 168 (290)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~--~~~~lin~s~~~ 168 (290)
..++.++ +.|+ ....||++|+..
T Consensus 85 n~~~~~~~-------~~~~~~~~~~iv~iSs~~ 110 (221)
T 3r6d_A 85 GSDMASIV-------KALSRXNIRRVIGVSMAG 110 (221)
T ss_dssp HHHHHHHH-------HHHHHTTCCEEEEEEETT
T ss_pred ChhHHHHH-------HHHHhcCCCeEEEEeece
Confidence 1133333 3332 223677777543
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.9e-05 Score=69.97 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=51.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeE-EEEeCCccchhhHHh-CC------------------CccCCCHHHHhhcCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLIS-LG------------------AKYQPSPDEVAASCD 129 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V-~~~d~~~~~~~~~~~-~g------------------~~~~~~~~~~~~~aD 129 (290)
+.||||+|+|.||+.+++.+... +.++ .++|+++++...+.+ .| +....+.++++.+.|
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vD 81 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD 81 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCC
Confidence 36899999999999999999875 4565 467887665544432 22 234468889988999
Q ss_pred eEEEEeCChh
Q 022909 130 VTFAMLADPE 139 (290)
Q Consensus 130 ivv~~~p~~~ 139 (290)
+|++|+|...
T Consensus 82 vV~~aTp~~~ 91 (334)
T 2czc_A 82 IIVDATPGGI 91 (334)
T ss_dssp EEEECCSTTH
T ss_pred EEEECCCccc
Confidence 9999998754
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.7e-05 Score=70.15 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=71.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--------CCeE-EEEeCCccchhh-H-----H----hCCCc-cCC---CHHHHh-h
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--------GCDV-TVWNRTKSKCDP-L-----I----SLGAK-YQP---SPDEVA-A 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--------g~~V-~~~d~~~~~~~~-~-----~----~~g~~-~~~---~~~~~~-~ 126 (290)
..+|||||+|.||+.+++.+... +.+| .++|+++++... + . ..++. .++ ++++++ .
T Consensus 6 ~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~ 85 (331)
T 3c8m_A 6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALAR 85 (331)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHS
T ss_pred EEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCC
Confidence 47899999999999999998764 2455 477888765433 1 1 11221 344 888888 2
Q ss_pred cCCeEEEEeCCh---hHHHHHhcccccccccCCCCCEEEEecCCC-hhHHHHHHHHHHHcCCcEE
Q 022909 127 SCDVTFAMLADP---ESAMDVACGKHGAASGMGPGKGYVDVSTVD-GDTSKLINGHIKATGASFL 187 (290)
Q Consensus 127 ~aDivv~~~p~~---~~~~~~~~~~~~~~~~~~~~~~lin~s~~~-~~~~~~l~~~l~~~~~~~~ 187 (290)
+.|+|+.++|.. ....... ...++.|+.++...-.. ....++|.+..+++++.+.
T Consensus 86 ~iDvVv~~t~~~~~~~~~~~~~------~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~ 144 (331)
T 3c8m_A 86 DFDIVVDATPASADGKKELAFY------KETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIR 144 (331)
T ss_dssp SCSEEEECSCCCSSSHHHHHHH------HHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCCEEEECCCCCCccchHHHHH------HHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEE
Confidence 589999999874 2222222 45577888887542211 1334577777777776653
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=4.3e-05 Score=68.26 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=70.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC----ccch--------hhHHhC-C-CccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT----KSKC--------DPLISL-G-AKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~----~~~~--------~~~~~~-g-~~~~~~~~~~~~~aDivv~~~ 135 (290)
..||.|+|.|.+|..+++.+...|. +|+++|++ .++. +.+.+. + .....+++|+++++|++|-+.
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~S 271 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS 271 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeC
Confidence 6899999999999999999999998 89999998 5442 222221 1 122457999999999988764
Q ss_pred CChhHHHHHhcccccccccCCCCCEEEEecCCChh
Q 022909 136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~ 170 (290)
. + .++ .++.++.|+++.+++.+|+-.+.
T Consensus 272 a-p----~l~--t~emVk~Ma~~pIIfalSNPt~E 299 (388)
T 1vl6_A 272 R-G----NIL--KPEWIKKMSRKPVIFALANPVPE 299 (388)
T ss_dssp C-S----SCS--CHHHHTTSCSSCEEEECCSSSCS
T ss_pred C-C----Ccc--CHHHHHhcCCCCEEEEcCCCCCC
Confidence 3 2 444 45566779999999999976543
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.9e-05 Score=67.92 Aligned_cols=90 Identities=28% Similarity=0.294 Sum_probs=57.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHH-CCCeEE-EEeCCccch--hhH------HhCCCccCCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLK-AGCDVT-VWNRTKSKC--DPL------ISLGAKYQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~-~g~~V~-~~d~~~~~~--~~~------~~~g~~~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
++||+|+|+ |+||+.+++.+.. .|+++. ++|+++++. ..+ ...++...++++++++++|+|+-.++ +.
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~-p~ 83 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR-PE 83 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-HH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCC-hH
Confidence 479999998 9999999998774 577766 778775431 111 11234455678888889999996653 34
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCC
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
.+...+ ...++.|..+|-.+++
T Consensus 84 ~~~~~~------~~a~~~G~~vVigTtG 105 (273)
T 1dih_A 84 GTLNHL------AFCRQHGKGMVIGTTG 105 (273)
T ss_dssp HHHHHH------HHHHHTTCEEEECCCC
T ss_pred HHHHHH------HHHHhCCCCEEEECCC
Confidence 444444 2334556555543343
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.87 E-value=6.4e-06 Score=69.02 Aligned_cols=91 Identities=16% Similarity=0.178 Sum_probs=61.2
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhCCC-------ccCCCHHHHhhcCCeEEEEeCChhH-
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGA-------KYQPSPDEVAASCDVTFAMLADPES- 140 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~g~-------~~~~~~~~~~~~aDivv~~~p~~~~- 140 (290)
+|+|.|.| .|.||+.+++.|...| ++|.+++|++++...+...++ .-.++++++++++|+||.+......
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~~ 102 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDLD 102 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTTHH
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCchh
Confidence 57899999 6999999999999999 899999999876543322121 1122456678889999987754322
Q ss_pred --HHHHhcccccccccCC--CCCEEEEecCCC
Q 022909 141 --AMDVACGKHGAASGMG--PGKGYVDVSTVD 168 (290)
Q Consensus 141 --~~~~~~~~~~~~~~~~--~~~~lin~s~~~ 168 (290)
++.+ ++.++ ....||++|+..
T Consensus 103 ~~~~~~-------~~~~~~~~~~~iV~iSS~~ 127 (236)
T 3qvo_A 103 IQANSV-------IAAMKACDVKRLIFVLSLG 127 (236)
T ss_dssp HHHHHH-------HHHHHHTTCCEEEEECCCC
T ss_pred HHHHHH-------HHHHHHcCCCEEEEEecce
Confidence 2233 33332 224678887643
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.8e-05 Score=67.86 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=51.4
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC----CCHHHHhhcCCeEEEEeCC
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~~~~aDivv~~~p~ 137 (290)
|+|+|.|.|+|.||+.+++.|.+.|++|++.+|++++...+...++... .+++ ++++|+||.+...
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~ 73 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP 73 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence 3589999999999999999999999999999999887666554443221 2333 6789999887754
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.85 E-value=3e-05 Score=67.86 Aligned_cols=65 Identities=23% Similarity=0.205 Sum_probs=48.8
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHH----h------CC--CccCCCHHHHhhcCCeEEEEeCCh
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S------LG--AKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~----~------~g--~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
||+|||+|.||..++..+...|+ +|.++|+++++.+... + .. +..+.+. +.+++||+|+++.+.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~ 78 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIG 78 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCC
Confidence 69999999999999999987787 7999999987654311 1 12 2222455 6789999999996644
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.3e-05 Score=67.99 Aligned_cols=166 Identities=11% Similarity=0.057 Sum_probs=95.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-------CCeEE-EEeCCccch------hh----HHhCC-Cc--cCCCHHHHhh--c
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-------GCDVT-VWNRTKSKC------DP----LISLG-AK--YQPSPDEVAA--S 127 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-------g~~V~-~~d~~~~~~------~~----~~~~g-~~--~~~~~~~~~~--~ 127 (290)
..+|+|||+|.||+.+++.+... +.+|. ++|+++... .. ..+.+ +. .. +.++++. +
T Consensus 4 ~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~~~ 82 (325)
T 3ing_A 4 EIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMGEA 82 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTTSC
T ss_pred eEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcCCC
Confidence 47899999999999999999763 34544 667765421 11 11223 21 12 5677775 4
Q ss_pred CCeEEEEeCChhHH---HHHhcccccccccCCCCCEEEEecCCCh-hHHHHHHHHHHHcCCcEEe-CccCCCCccccCCc
Q 022909 128 CDVTFAMLADPESA---MDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFLE-APVSGSKKPAEDGQ 202 (290)
Q Consensus 128 aDivv~~~p~~~~~---~~~~~~~~~~~~~~~~~~~lin~s~~~~-~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~ 202 (290)
.|+|+.++|..... ...+ ...++.|..+|...-... ...++|.+..++++..+.- ..+.++.|
T Consensus 83 iDvVVe~T~~~~~~~pa~~~~------~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~giP------ 150 (325)
T 3ing_A 83 ADLLVDCTPASRDGVREYSLY------RMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGVP------ 150 (325)
T ss_dssp CSEEEECCCCCSSSHHHHHHH------HHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSC------
T ss_pred CCEEEECCCCccccchHHHHH------HHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccCH------
Confidence 89999999864221 2222 455778888885533222 2445777777777776643 33322222
Q ss_pred eEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCC
Q 022909 203 LIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS---CTFSYSFLTLEFVDF 266 (290)
Q Consensus 203 ~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~---~~~~ea~~l~~~~G~ 266 (290)
.++.+++++ -|.++..+..+-++.. |++..-| ..+.|++.-+++.|.
T Consensus 151 ----------ii~~l~~~l--~g~~I~~i~Gi~nGT~-----nyil~~m~~g~~f~~~l~~Aq~~Gy 200 (325)
T 3ing_A 151 ----------LFSVLDYSI--LPSKVKRFRGIVSSTI-----NYVIRNMANGRSLRDVVDDAIKKGI 200 (325)
T ss_dssp ----------CHHHHHHTC--TTCCEEEEEEECCHHH-----HHHHHHHHTTCCHHHHHHHHHHHTC
T ss_pred ----------HHHHHHHHh--hCCCeeEEEEEEEeee-----eEEeecccCCCCHHHHHHHHHHcCC
Confidence 124566655 3455555554444432 2222111 456677777777775
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.1e-05 Score=65.02 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=74.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccch-hhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~~ 146 (290)
..++.|+|+ |++|+.+++.+...|++ .++..+|.+. ++ -.|+..+.+++++.+ ..|++++++|. +.+...+
T Consensus 13 ~~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~Dv~ii~vp~-~~~~~~v- 87 (294)
T 2yv1_A 13 NTKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQN--VHGVPVFDTVKEAVKETDANASVIFVPA-PFAKDAV- 87 (294)
T ss_dssp TCCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHH-
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCEEEEccCH-HHHHHHH-
Confidence 466888898 99999999999999998 5555555432 11 146777889999988 89999999986 4445544
Q ss_pred ccccccccCCCCCE-EEEecCC-ChhHHHHHHHHHHHcCCcEEe
Q 022909 147 GKHGAASGMGPGKG-YVDVSTV-DGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 147 ~~~~~~~~~~~~~~-lin~s~~-~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+ .|.- +|..+.+ +..+.+++.+..++.+++++.
T Consensus 88 --~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viG 126 (294)
T 2yv1_A 88 --FEAID---AGIELIVVITEHIPVHDTMEFVNYAEDVGVKIIG 126 (294)
T ss_dssp --HHHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred --HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 12222 2322 4444444 444567888888888887664
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.82 E-value=3.6e-05 Score=67.41 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=61.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC--CeEEEEeCCccchhhHH-h--C------CCccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLI-S--L------GAKYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~~~~~~~-~--~------g~~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
+||+|||+|.+|..++..+...+ .++.++|+++++.+... + . ......+..+.+++||+|+++.+.+..
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~ 80 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR 80 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence 58999999999999999998876 48999999976654321 1 1 112211235678999999998865432
Q ss_pred -----------HHHHhcccccccccCCCCCEEEEecC
Q 022909 141 -----------AMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 141 -----------~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+..++..-.+......|++++++.|.
T Consensus 81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 11222100011222368889998844
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.80 E-value=3e-05 Score=64.89 Aligned_cols=88 Identities=7% Similarity=0.052 Sum_probs=60.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc----CCCHH---HH-hhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPD---EV-AASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~----~~~~~---~~-~~~aDivv~~~p~~~~~~ 142 (290)
.++|.|+|+|.+|+.+++.|...|+ |+++++++++.+.+. .++.. ..+.+ ++ ++++|.|++++|.+....
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~ 86 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI 86 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHH
Confidence 5789999999999999999999999 999999988776665 44432 12222 22 568999999998754433
Q ss_pred HHhcccccccccCCCC-CEEEEe
Q 022909 143 DVACGKHGAASGMGPG-KGYVDV 164 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~-~~lin~ 164 (290)
.+. .....+.++ .++..+
T Consensus 87 ~~~----~~a~~~~~~~~iia~~ 105 (234)
T 2aef_A 87 HCI----LGIRKIDESVRIIAEA 105 (234)
T ss_dssp HHH----HHHHHHCSSSEEEEEC
T ss_pred HHH----HHHHHHCCCCeEEEEE
Confidence 322 223445566 444433
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=9.6e-06 Score=67.15 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=45.0
Q ss_pred CCeEEEEcccHhHHHHHHH--HHHCCCeE-EEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQN--LLKAGCDV-TVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~--l~~~g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
.++|+|||+|++|+.+++. +...|+++ .++|.++++...... .++...+++++++++.|++++++|..
T Consensus 85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~ 156 (215)
T 2vt3_A 85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAV 156 (215)
T ss_dssp --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHH
T ss_pred CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCch
Confidence 4789999999999999994 44557765 478998876543221 22334567888886669999988763
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.79 E-value=4.1e-05 Score=67.53 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=62.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhh----HHhC-------CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LISL-------GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~----~~~~-------g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
.+||+|||+|.||..++..+...|. ++.++|+++++.+. +.+. .+....+.+ .+++||+||++...
T Consensus 19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~aG~ 97 (331)
T 4aj2_A 19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIITAGA 97 (331)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEccCC
Confidence 6899999999999999999998887 89999998765543 2211 112244565 58999999998643
Q ss_pred hh---H--------HHHHhcccccccccCCCCCEEEEecC
Q 022909 138 PE---S--------AMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 138 ~~---~--------~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+. . +..++..-.+.+....|+++++++|+
T Consensus 98 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 98 RQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 21 1 11222100011223478899999864
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.78 E-value=6.7e-05 Score=67.03 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=56.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHh-----CC-----CccCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-----LG-----AKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~-----~g-----~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
.+||+|+| +|.+|+.+.+.|.... .++.......+....+.. .+ +.. .+ ++.++++|+|++|+|..
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~-~~-~~~~~~vDvVf~atp~~ 93 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVS-VK-DADFSTVDAVFCCLPHG 93 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC-GG-GCCGGGCSEEEECCCTT
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCccccccee-cc-hhHhcCCCEEEEcCCch
Confidence 47999999 8999999999998875 376665443322222221 11 111 12 44557899999999874
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~ 168 (290)
.. .... ... +.|..+|+.|...
T Consensus 94 ~s-~~~a------~~~-~aG~~VId~sa~~ 115 (359)
T 1xyg_A 94 TT-QEII------KEL-PTALKIVDLSADF 115 (359)
T ss_dssp TH-HHHH------HTS-CTTCEEEECSSTT
T ss_pred hH-HHHH------HHH-hCCCEEEECCccc
Confidence 43 3333 233 6788999998643
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.78 E-value=7.1e-05 Score=62.40 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=55.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC-cc-----CCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA-KY-----QPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~-~~-----~~~~~~~~~~aDivv~~~p~ 137 (290)
+|+|.|.|. |.||+.+++.|.+.|++|++.+|++++.+.+.+.++ .. .+++.+.+.+.|+||.+...
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~ 94 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGS 94 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence 799999996 999999999999999999999999888776655444 21 14567788899999987753
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00024 Score=59.95 Aligned_cols=99 Identities=19% Similarity=0.175 Sum_probs=61.1
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHhCCCccCCCHHHHhh-cCCeEEEEeCChhHHHHHhcc
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivv~~~p~~~~~~~~~~~ 147 (290)
+||+|+|+ |+||+.+++.+... ++++. ++|+. +++++++. .+|+||-+.+. ..+...+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~p-~a~~~~~-- 62 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTHP-DVVMGNL-- 62 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSCT-TTHHHHH--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccCh-HHHHHHH--
Confidence 47999996 99999999998865 88876 55543 24556665 78998866643 4444443
Q ss_pred cccccccCCCCCEEEEecCCChhH-HHHHHHHHHHc-CCcEEeCccC
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDT-SKLINGHIKAT-GASFLEAPVS 192 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~-~~~l~~~l~~~-~~~~~~~p~~ 192 (290)
...++.|.-+|-.+++-... .+.+.++.++. ++.++-.|.+
T Consensus 63 ----~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~ 105 (245)
T 1p9l_A 63 ----EFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNF 105 (245)
T ss_dssp ----HHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCC
T ss_pred ----HHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 22344555555444443332 33445544433 6666666655
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.74 E-value=6.8e-05 Score=66.65 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=56.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CCCccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
++||+|+| +|.+|+.+.+.|..... ++.......+....+.+ ..+. ..+.++ +.++|+|++|+|....
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~-~~~vDvV~~a~g~~~s 81 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK-LEPADILVLALPHGVF 81 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG-CCCCSEEEECCCTTHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH-hcCCCEEEEcCCcHHH
Confidence 57999999 79999999999987654 76655443222222221 1122 223444 4789999999987543
Q ss_pred HHHHhcccccccccCCCCCEEEEecCC
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
.... ...++.|..+|+.|..
T Consensus 82 -~~~a------~~~~~aG~~VId~Sa~ 101 (345)
T 2ozp_A 82 -AREF------DRYSALAPVLVDLSAD 101 (345)
T ss_dssp -HHTH------HHHHTTCSEEEECSST
T ss_pred -HHHH------HHHHHCCCEEEEcCcc
Confidence 3332 2234678889999764
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.74 E-value=7.7e-05 Score=65.79 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=49.8
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCC--CeEEEEeCCccch--hhHHhCCC----cc---CCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAG--CDVTVWNRTKSKC--DPLISLGA----KY---QPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g--~~V~~~d~~~~~~--~~~~~~g~----~~---~~~~~~~~~~aDivv~~~p~~ 138 (290)
.+||+|+| +|.+|..++..|...| .+|.++|++++.. ..+.+... .. .+++.++++++|+||++.+.+
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~ 87 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP 87 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence 58999999 8999999999999888 7899999876521 11222111 11 225677899999999998643
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.74 E-value=9.1e-06 Score=71.77 Aligned_cols=102 Identities=13% Similarity=0.182 Sum_probs=66.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC---------CCeE-EEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA---------GCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~---------g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
..+|||||+|.||+.+++.+... +.+| .++|+++++.+.+.. ...++++++++ +.|+|+.++|....
T Consensus 3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~--~~~~~d~~~ll-~iDvVve~t~~~~~ 79 (332)
T 2ejw_A 3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQ--ELLRAEPFDLL-EADLVVEAMGGVEA 79 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCG--GGEESSCCCCT-TCSEEEECCCCSHH
T ss_pred eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCc--ccccCCHHHHh-CCCEEEECCCCcHH
Confidence 47899999999999999999775 3454 477887655432211 13456788888 99999999986543
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCCh--hHHHHHHHHHHHc
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDG--DTSKLINGHIKAT 182 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~--~~~~~l~~~l~~~ 182 (290)
....+ ...++.|+.++..+ -.+ ...++|.+..+++
T Consensus 80 a~~~~------~~AL~aGKhVVtaN-kkpla~~~~eL~~~A~~~ 116 (332)
T 2ejw_A 80 PLRLV------LPALEAGIPLITAN-KALLAEAWESLRPFAEEG 116 (332)
T ss_dssp HHHHH------HHHHHTTCCEEECC-HHHHHHSHHHHHHHHHTT
T ss_pred HHHHH------HHHHHcCCeEEECC-chhHHHHHHHHHHHHHhC
Confidence 33333 34567788777432 112 2334566655544
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0001 Score=64.57 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=48.5
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCC--CeEEEEeCCccchh--hHHhC--C--Ccc---CCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAG--CDVTVWNRTKSKCD--PLISL--G--AKY---QPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g--~~V~~~d~~~~~~~--~~~~~--g--~~~---~~~~~~~~~~aDivv~~~p~ 137 (290)
|||+|||+ |.+|..++..|...| .+|.++|+++.+.. .+.+. . +.. .++++++++++|+|+++...
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~ 78 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCc
Confidence 58999998 999999999999887 68999999872211 11111 0 122 14678889999999998754
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.4e-05 Score=67.84 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=32.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
+++|.|||+|.+|..+++.|...|. +|+++|++.
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 6899999999999999999999997 899999986
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.68 E-value=6.8e-05 Score=66.50 Aligned_cols=66 Identities=11% Similarity=0.203 Sum_probs=51.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC--eEEEEeCCccchhh----HHhC-----CCccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LISL-----GAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~----~~~~-----g~~~~~~~~~~~~~aDivv~~~p 136 (290)
++||+|||+ |.+|..+|..+...|. +|.++|+++++.+. +.+. .+...++..+.+++||+||++..
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence 589999997 9999999999998884 89999998765443 2221 23344678888999999999864
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2.2e-05 Score=70.48 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=65.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC---eEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~---~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
..+|.|||. |+.|+.-++.+...|. +|.++|+++... |.. + +.+.++|+||.++........++
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~~----~-~~i~~aDivIn~vlig~~aP~Lv- 281 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------GGP----F-DEIPQADIFINCIYLSKPIAPFT- 281 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------CSC----C-THHHHSSEEEECCCCCSSCCCSC-
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------CCc----h-hhHhhCCEEEECcCcCCCCCccc-
Confidence 568999999 9999999999999998 899999876221 222 2 34679999999998744444555
Q ss_pred ccccccccC-CCCCEEEEecC
Q 022909 147 GKHGAASGM-GPGKGYVDVST 166 (290)
Q Consensus 147 ~~~~~~~~~-~~~~~lin~s~ 166 (290)
.++.++.| +++.+|||+|-
T Consensus 282 -t~e~v~~m~k~gsVIVDVA~ 301 (394)
T 2qrj_A 282 -NMEKLNNPNRRLRTVVDVSA 301 (394)
T ss_dssp -CHHHHCCTTCCCCEEEETTC
T ss_pred -CHHHHhcCcCCCeEEEEEec
Confidence 55667889 99999999963
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00019 Score=62.36 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=72.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccch-hhHHhCCCccCCCHHHHhh--c-CCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISLGAKYQPSPDEVAA--S-CDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~~~~~~~~~~~--~-aDivv~~~p~~~~~~~~~ 145 (290)
..++.|+|+ |++|+.+++.+...|++ .++..+|.+. ++ -.|+..+.+++++.+ . .|++++++|. +.+...+
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~~DvaIi~vp~-~~~~~~v 88 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGSE--VHGVPVYDSVKEALAEHPEINTSIVFVPA-PFAPDAV 88 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHCTTCCEEEECCCG-GGHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCCEEEEecCH-HHHHHHH
Confidence 456888898 99999999999988998 4444445432 11 146778889999987 5 9999999986 4445554
Q ss_pred cccccccccCCCCCE-EEEecCC-ChhHHHHHHHHHHHcCCcEEe
Q 022909 146 CGKHGAASGMGPGKG-YVDVSTV-DGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~-lin~s~~-~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+ .|.- +|..+.+ ...+.+++.+..++.+++++.
T Consensus 89 ---~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viG 127 (297)
T 2yv2_A 89 ---YEAVD---AGIRLVVVITEGIPVHDTMRFVNYARQKGATIIG 127 (297)
T ss_dssp ---HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred ---HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 11222 2322 4444444 444567888888888887664
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00029 Score=57.67 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=48.7
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc-----CCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-----QPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~~~~~~~~~~aDivv~~~p~ 137 (290)
|||.|.| .|.||+.+++.|.+.|++|.+.+|++++.+.+. .++.. .+...+.+.++|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 5799999 599999999999999999999999987655442 22221 11111677889999988754
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=6.1e-05 Score=66.70 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=47.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-------------------CCCccCCCHHHHhhcCCe
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDV 130 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDi 130 (290)
.||||+|+|+||+.+++.|... ++++. +.++++........ .++....+.++++.++|+
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv 81 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI 81 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence 5899999999999999999874 56664 56666443322221 122222356777789999
Q ss_pred EEEEeCChh
Q 022909 131 TFAMLADPE 139 (290)
Q Consensus 131 vv~~~p~~~ 139 (290)
|+.|+|...
T Consensus 82 V~~atp~~~ 90 (337)
T 1cf2_P 82 VIDCTPEGI 90 (337)
T ss_dssp EEECCSTTH
T ss_pred EEECCCchh
Confidence 999998643
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00033 Score=57.53 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=49.4
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-CCH----HHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-PSP----DEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~~~----~~~~~~aDivv~~~p~ 137 (290)
|||.|.|. |.||+.+++.|.+.|++|.+.+|++++...+...++... .|+ .+.+.++|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 57999996 999999999999999999999999876654433333211 111 1677899999987754
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.62 E-value=7.4e-05 Score=56.06 Aligned_cols=103 Identities=13% Similarity=0.117 Sum_probs=74.3
Q ss_pred CCeEEEEcc----cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~----G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.++|+|||+ ++.|..+.+.|...|++|+-.++..+.. .|...+.++.++-. .|++++++|. +.+..++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v- 75 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYINP-QNQLSEY- 75 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSCH-HHHGGGH-
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeCH-HHHHHHH-
Confidence 588999997 6799999999999999999988765432 35666677888767 9999999975 5566666
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+ .....+++ +.|. ..+++.+.+++.|++++.
T Consensus 76 --~e~~~-~g~k~v~~--~~G~--~~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 76 --NYILS-LKPKRVIF--NPGT--ENEELEEILSENGIEPVI 110 (122)
T ss_dssp --HHHHH-HCCSEEEE--CTTC--CCHHHHHHHHHTTCEEEE
T ss_pred --HHHHh-cCCCEEEE--CCCC--ChHHHHHHHHHcCCeEEC
Confidence 22222 22334444 3332 346888888999999885
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00016 Score=63.09 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=75.7
Q ss_pred CCeEEEE-cc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFL-GM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~Igii-G~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~~ 146 (290)
.++++|| |+ |++|..+++.+...|++ .+++.+|.+... .-.|+..+.+++|+.+ ..|++++++|. +....++
T Consensus 13 ~~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~vD~avI~vP~-~~~~~~~- 88 (305)
T 2fp4_A 13 KNTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGGK-THLGLPVFNTVKEAKEQTGATASVIYVPP-PFAAAAI- 88 (305)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC-EETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHH-
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCcc-eECCeeeechHHHhhhcCCCCEEEEecCH-HHHHHHH-
Confidence 6789999 98 99999999999999998 445555543210 1246777789999988 89999999986 4445554
Q ss_pred ccccccccCCCCCEEEEecCCCh-hHHHHHHHHHHHc-CCcEEe
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKAT-GASFLE 188 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~-~~~~~l~~~l~~~-~~~~~~ 188 (290)
++..+. .- ..+++.+.+-. .+..++.+.+++. ++.++.
T Consensus 89 --~e~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liG 128 (305)
T 2fp4_A 89 --NEAIDA-EV-PLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 128 (305)
T ss_dssp --HHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred --HHHHHC-CC-CEEEEECCCCChHHHHHHHHHHHhcCCcEEEe
Confidence 122221 11 24456666543 3455888888888 888764
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00019 Score=63.56 Aligned_cols=68 Identities=12% Similarity=0.214 Sum_probs=46.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-CCCc-----------------cCCCHHHHhhcCCeE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAK-----------------YQPSPDEVAASCDVT 131 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~~-----------------~~~~~~~~~~~aDiv 131 (290)
.||||+|+|+||+.+++.+... ++++. +.|++++....... .++. ...+.+++++++|+|
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV 81 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV 81 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence 5899999999999999999875 35654 66776554332222 2222 223455666789999
Q ss_pred EEEeCChh
Q 022909 132 FAMLADPE 139 (290)
Q Consensus 132 v~~~p~~~ 139 (290)
+.|+|...
T Consensus 82 ~~aTp~~~ 89 (340)
T 1b7g_O 82 VDTTPNGV 89 (340)
T ss_dssp EECCSTTH
T ss_pred EECCCCch
Confidence 99998653
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.56 E-value=6.3e-05 Score=62.15 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=50.2
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh------CCCccCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS------LGAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~------~g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
+|+|.|.| .|.+|+.+++.|.+.|++|++.+|++++...+.. ..+.-.+++.++++++|+||.+...
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 58999999 5999999999999999999999999776543211 0111123456678889999987654
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00012 Score=63.40 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=46.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhh----HHh----CC----CccCCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LIS----LG----AKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~----~~~----~g----~~~~~~~~~~~~~aDivv~~~p 136 (290)
|||+|||+|.+|+.+|-.|...+. ++.++|.++++.+. +.+ .+ +....+. +.+++||+|+++.-
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~-~~~~~aDvVvitAG 78 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAG 78 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG-GGGTTCSEEEECCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH-HHhCCCCEEEEecC
Confidence 689999999999999999887764 89999998754332 111 11 1122344 46899999999764
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00036 Score=61.83 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=46.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhh---------------------HHhCCCccCCCHHHHhhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDP---------------------LISLGAKYQPSPDEVAAS 127 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~---------------------~~~~g~~~~~~~~~~~~~ 127 (290)
+.||||+|+|+||+.+++.+... +++|. +.|++++.... +.+.++....+.++++.+
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~ 81 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIED 81 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccC
Confidence 36999999999999999999876 46755 44544332221 122233333345566678
Q ss_pred CCeEEEEeCChh
Q 022909 128 CDVTFAMLADPE 139 (290)
Q Consensus 128 aDivv~~~p~~~ 139 (290)
+|+|+.|+|...
T Consensus 82 vDiV~eatg~~~ 93 (343)
T 2yyy_A 82 ADIVVDGAPKKI 93 (343)
T ss_dssp CSEEEECCCTTH
T ss_pred CCEEEECCCccc
Confidence 999999987643
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0001 Score=65.71 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=55.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCC-CeEEEEeCCcc-chhhHHh-CC-------------CccC-CCHHHHhh-cCCeE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKS-KCDPLIS-LG-------------AKYQ-PSPDEVAA-SCDVT 131 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g-~~V~~~d~~~~-~~~~~~~-~g-------------~~~~-~~~~~~~~-~aDiv 131 (290)
++||+|+| +|++|+.+++.|.... ++|....+++. ..+.+.+ .+ +... .+.+++++ ++|+|
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV 87 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIV 87 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEE
T ss_pred cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEE
Confidence 47999999 8999999999998764 57765543221 1111211 11 1111 14455556 89999
Q ss_pred EEEeCChhHHHHHhcccccccccCCCCCEEEEecCC
Q 022909 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 132 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
++|+|... ..... ...++.|..+|+.+..
T Consensus 88 ~~atp~~~-~~~~a------~~~~~aG~~VId~s~~ 116 (354)
T 1ys4_A 88 FSALPSDL-AKKFE------PEFAKEGKLIFSNASA 116 (354)
T ss_dssp EECCCHHH-HHHHH------HHHHHTTCEEEECCST
T ss_pred EECCCchH-HHHHH------HHHHHCCCEEEECCch
Confidence 99998643 33333 1223467889998754
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.47 E-value=5.9e-05 Score=64.80 Aligned_cols=66 Identities=17% Similarity=0.036 Sum_probs=50.6
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHC-CCeEEEEeCCccchhhHHhCCCcc-------CCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivv~~~p~ 137 (290)
|+|.|.| .|.+|+.+++.|... |++|.+.+|++++...+...++.. .++++++++++|+|+.+.+.
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 5799999 599999999999987 999999999987765544333321 12456678899999987654
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00014 Score=64.71 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=56.4
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCC-----C-eEEEEe-CC-ccc-hhh----HHh-CCCccC-CCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAG-----C-DVTVWN-RT-KSK-CDP----LIS-LGAKYQ-PSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g-----~-~V~~~d-~~-~~~-~~~----~~~-~g~~~~-~~~~~~~~~aDivv~~ 134 (290)
++||+|+| +|.+|+.+.+.|..++ . ++.... ++ ..+ ... +.. ..+... .+. +.+.++|+|+.|
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~a 87 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLA 87 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEEC
Confidence 37999999 8999999999999876 3 666554 32 212 211 111 112111 133 345689999999
Q ss_pred eCChhHHHHHhcccccccccCCCCCEEEEecCCChh
Q 022909 135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 135 ~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~ 170 (290)
+|... .+.+. -.. +.|..+|+.|...-.
T Consensus 88 lg~~~-s~~~~------~~~-~~G~~vIDlSa~~R~ 115 (352)
T 2nqt_A 88 LPHGH-SAVLA------QQL-SPETLIIDCGADFRL 115 (352)
T ss_dssp CTTSC-CHHHH------HHS-CTTSEEEECSSTTTC
T ss_pred CCCcc-hHHHH------HHH-hCCCEEEEECCCccC
Confidence 98754 33333 122 568899999865543
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00022 Score=62.95 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=49.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCC----ccchhh----HHhC------CCccCCCHHHHhhcC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRT----KSKCDP----LISL------GAKYQPSPDEVAASC 128 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~----~~~~~~----~~~~------g~~~~~~~~~~~~~a 128 (290)
.+||+|+|+ |.+|..++..|...|+ +|.++|++ .++.+. +.+. .+...++..+.++++
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a 84 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA 84 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence 579999997 9999999999988875 79999998 433321 2221 112236788899999
Q ss_pred CeEEEEeC
Q 022909 129 DVTFAMLA 136 (290)
Q Consensus 129 Divv~~~p 136 (290)
|+|+++..
T Consensus 85 D~Vi~~ag 92 (329)
T 1b8p_A 85 DVALLVGA 92 (329)
T ss_dssp SEEEECCC
T ss_pred CEEEEeCC
Confidence 99998765
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00015 Score=58.61 Aligned_cols=67 Identities=24% Similarity=0.290 Sum_probs=49.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-------cCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivv~~~p~ 137 (290)
+|+|.|.|. |.||+.+++.|.+.|++|.+.+|++++.......++. ..+++.++++++|+|+.+...
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~ 77 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence 479999997 9999999999999999999999987654322111221 112355667789999887654
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00035 Score=58.01 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=57.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhC-CCccC--CCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISL-GAKYQ--PSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~-g~~~~--~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
+++|.|||.|.+|..-++.|...|.+|+++++.... ...+.+. ++... .-.++.+.++|+||.++.. +++...+
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d-~~~N~~I- 108 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATND-QAVNKFV- 108 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCC-THHHHHH-
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCC-HHHHHHH-
Confidence 899999999999999999999999999999986532 2333332 23211 1123456789999877644 4554444
Q ss_pred ccccccccCCCCCEEEEecC
Q 022909 147 GKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~ 166 (290)
....+ ..++||+..
T Consensus 109 -----~~~ak-~gi~VNvvD 122 (223)
T 3dfz_A 109 -----KQHIK-NDQLVNMAS 122 (223)
T ss_dssp -----HHHSC-TTCEEEC--
T ss_pred -----HHHHh-CCCEEEEeC
Confidence 12223 456777743
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00013 Score=65.21 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=52.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC----CeEE-EEeCCccchhhHHhC--CCccCCCHHHHhhcC---------------
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG----CDVT-VWNRTKSKCDPLISL--GAKYQPSPDEVAASC--------------- 128 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g----~~V~-~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~a--------------- 128 (290)
..+|||||+|.||+.+++.+.... .+|. ++|++.. .+.+. |+..+++.++++++.
T Consensus 4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~---~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~ 80 (358)
T 1ebf_A 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERS---LISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLK 80 (358)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBE---EECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHT
T ss_pred eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChh---hhccccCCCCccccHHHHHhcccCCCCCHHHHHHHhh
Confidence 478999999999999999998853 4553 5665432 12222 454445666666543
Q ss_pred -----CeEEEEeCChhHHHHHhcccccccccCCCCCEEEE
Q 022909 129 -----DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD 163 (290)
Q Consensus 129 -----Divv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin 163 (290)
|+|+.|+|....... ....++.|+.+|-
T Consensus 81 ~~~~~DvVV~~t~~~~~a~~-------~~~AL~aGkhVVt 113 (358)
T 1ebf_A 81 TSPKPVILVDNTSSAYIAGF-------YTKFVENGISIAT 113 (358)
T ss_dssp TCSSCEEEEECSCCHHHHTT-------HHHHHHTTCEEEC
T ss_pred hccCCcEEEEcCCChHHHHH-------HHHHHHCCCeEEe
Confidence 678888776433222 2345677777764
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=7.5e-05 Score=66.22 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=51.1
Q ss_pred CCCCeEEEEc-ccHhHHHHHHHHHHCCC---eEEEE-eCCc-cchhhHHhCCCccCC-CHHHHhhcCCeEEEEeCChhHH
Q 022909 69 ELPGRIGFLG-MGIMGTPMAQNLLKAGC---DVTVW-NRTK-SKCDPLISLGAKYQP-SPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 69 ~~~~~IgiiG-~G~iG~~la~~l~~~g~---~V~~~-d~~~-~~~~~~~~~g~~~~~-~~~~~~~~aDivv~~~p~~~~~ 141 (290)
+|.+||+|+| +|.+|+.+.+.|...++ ++... +++. .+...+....+...+ +.+ .++++|+|+.|+|... .
T Consensus 4 ~m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~-~~~~~DvV~~a~g~~~-s 81 (340)
T 2hjs_A 4 SQPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSF-DFSSVGLAFFAAAAEV-S 81 (340)
T ss_dssp -CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGC-CGGGCSEEEECSCHHH-H
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHH-HhcCCCEEEEcCCcHH-H
Confidence 3457999999 89999999999985544 44444 4332 111011110111110 122 2568999999997543 2
Q ss_pred HHHhcccccccccCCCCCEEEEecCC
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
.... -..++.|..+|+.|..
T Consensus 82 ~~~a------~~~~~aG~kvId~Sa~ 101 (340)
T 2hjs_A 82 RAHA------ERARAAGCSVIDLSGA 101 (340)
T ss_dssp HHHH------HHHHHTTCEEEETTCT
T ss_pred HHHH------HHHHHCCCEEEEeCCC
Confidence 3332 1223457778887643
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0007 Score=59.16 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=46.7
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHC-C--CeEEEEeCCccchh----hHHhCCC--ccC----CCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKA-G--CDVTVWNRTKSKCD----PLISLGA--KYQ----PSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~-g--~~V~~~d~~~~~~~----~~~~~g~--~~~----~~~~~~~~~aDivv~~~p~ 137 (290)
|||+||| +|.+|..++..|... + .++.++|+++ +.+ ++.+... ... ++..+.++++|+|+++.+.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~ 79 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence 5899999 899999999999764 4 5899999986 222 2222211 111 2456778999999998754
Q ss_pred h
Q 022909 138 P 138 (290)
Q Consensus 138 ~ 138 (290)
+
T Consensus 80 ~ 80 (312)
T 3hhp_A 80 A 80 (312)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.39 E-value=7e-05 Score=63.55 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=31.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|+|+|.+|..+++.|...|. +++++|++.
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 7899999999999999999999997 788998764
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00035 Score=61.74 Aligned_cols=32 Identities=16% Similarity=0.399 Sum_probs=25.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNR 102 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~ 102 (290)
+.||||+|+|+||+.+++.+... +.+|. +.|+
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~ 36 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDP 36 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECS
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCC
Confidence 46999999999999999998764 56765 4453
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00018 Score=61.66 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=47.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHH---hCCCccCCCHHHHhhc-CCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI---SLGAKYQPSPDEVAAS-CDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~---~~g~~~~~~~~~~~~~-aDivv~~~p 136 (290)
+|+|.|.|+|.||+.+++.|.+.|++|++.+|++++...-. ...+.-..+++++++. +|+||.+..
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 58999999999999999999999999999999876532100 0112112334556666 999887653
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=4e-05 Score=63.23 Aligned_cols=67 Identities=9% Similarity=0.116 Sum_probs=47.1
Q ss_pred CCeEEEEcccHhHHHHHHHH--HHCCCeE-EEEeCCccchhhHHh-CCCccCCCHHHHhh-cCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNL--LKAGCDV-TVWNRTKSKCDPLIS-LGAKYQPSPDEVAA-SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l--~~~g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~-~aDivv~~~p~~ 138 (290)
.++|+|||+|++|+.+++.+ .. |+++ .++|.++++...... ..+...++++++++ +.|+|++|+|..
T Consensus 80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~ 151 (211)
T 2dt5_A 80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE 151 (211)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence 47899999999999999962 23 6764 577888876543221 12333567788776 488899888764
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00049 Score=63.37 Aligned_cols=114 Identities=18% Similarity=0.085 Sum_probs=69.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc----chhhHHhCCCccC--CCHHHHhhc-CCeEEEEe--CC-hhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS----KCDPLISLGAKYQ--PSPDEVAAS-CDVTFAML--AD-PES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~----~~~~~~~~g~~~~--~~~~~~~~~-aDivv~~~--p~-~~~ 140 (290)
+++|.|||.|..|.+.|+.|...|++|.++|.++. ..+.+++.|+... .+.++++.+ +|+||+.. |. ++.
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~~p~ 88 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPM 88 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTTSHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCCChh
Confidence 78999999999999999999999999999998653 2345566676543 233455666 89998863 22 222
Q ss_pred HHHHhc------ccccccccCCCCCEEEEec-CCChhHHHHHHHHHHHcCC
Q 022909 141 AMDVAC------GKHGAASGMGPGKGYVDVS-TVDGDTSKLINGHIKATGA 184 (290)
Q Consensus 141 ~~~~~~------~~~~~~~~~~~~~~lin~s-~~~~~~~~~l~~~l~~~~~ 184 (290)
...... ...+++..+.+..++--++ .|+..+..-+...|+..+.
T Consensus 89 ~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~ 139 (451)
T 3lk7_A 89 VKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ 139 (451)
T ss_dssp HHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 222210 0012222223344443333 4445555556666776654
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00025 Score=63.15 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=53.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCC-CeEEEEe-CCccchhhHHh-C-------------CCccCC-CHHHHhhcCCeEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWN-RTKSKCDPLIS-L-------------GAKYQP-SPDEVAASCDVTF 132 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g-~~V~~~d-~~~~~~~~~~~-~-------------g~~~~~-~~~~~~~~aDivv 132 (290)
++||+|+| +|.+|+.+.+.|.... .++.... .+....+.+.+ + .+...+ +.++ ++++|+|+
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf 82 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVL 82 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEE
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEE
Confidence 57999999 8999999999998754 4666553 22111111211 1 122211 3334 47899999
Q ss_pred EEeCChhHHHHHhcccccccccCCCCCEEEEecCC
Q 022909 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 133 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
+|+|.... .... ...++.|..+|+.|..
T Consensus 83 ~atp~~~s-~~~a------~~~~~aG~~VId~s~~ 110 (350)
T 2ep5_A 83 SALPNELA-ESIE------LELVKNGKIVVSNASP 110 (350)
T ss_dssp ECCCHHHH-HHHH------HHHHHTTCEEEECSST
T ss_pred ECCChHHH-HHHH------HHHHHCCCEEEECCcc
Confidence 99976433 3332 2234567778888753
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00034 Score=62.04 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=68.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-CCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-PSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+++.|...+ .+.+++.+..|+|+-++..+......
T Consensus 177 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~~~----- 251 (348)
T 3two_A 177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDY----- 251 (348)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHHHH-----
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHHHH-----
Confidence 789999999999999999999999999999999998888877775422 33344334689999888764344433
Q ss_pred cccccCCCCCEEEEecCCC
Q 022909 150 GAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~ 168 (290)
++.++++..++.++...
T Consensus 252 --~~~l~~~G~iv~~G~~~ 268 (348)
T 3two_A 252 --LKLLTYNGDLALVGLPP 268 (348)
T ss_dssp --HTTEEEEEEEEECCCCC
T ss_pred --HHHHhcCCEEEEECCCC
Confidence 45677888888776443
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0008 Score=58.58 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=46.3
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCC--eEEEEeC--Cccchhh----HHhC-----CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGC--DVTVWNR--TKSKCDP----LISL-----GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~--~V~~~d~--~~~~~~~----~~~~-----g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
|||+|+| +|.+|..++..|...|. ++.++|+ ++++.+. +.+. .+....+..+.++++|+|+++...
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~ 80 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence 5899999 99999999999988775 6889999 6644322 1111 111111225678999999998763
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=67.64 Aligned_cols=68 Identities=22% Similarity=0.326 Sum_probs=52.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCcc----CCC---HHHH-hhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY----QPS---PDEV-AASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~----~~~---~~~~-~~~aDivv~~~p~~ 138 (290)
.|+|-|+|+|++|+.+|+.|...|++|++.|+++++.+.+.+ .++.. .++ ++++ ++++|+++.+++.+
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D 79 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTD 79 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence 589999999999999999999999999999999998887765 34432 122 2222 45799988776653
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0016 Score=58.25 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=65.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-------CCHHHHhh-----cCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivv~~~p~ 137 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|...+ .++.+.+. ..|+|+.++..
T Consensus 193 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~ 272 (374)
T 1cdo_A 193 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGN 272 (374)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCCC
Confidence 6899999999999999999999998 79999999988887777765321 12333333 37999988865
Q ss_pred hhHHHHHhcccccccccCCCC-CEEEEecC
Q 022909 138 PESAMDVACGKHGAASGMGPG-KGYVDVST 166 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~-~~lin~s~ 166 (290)
+...... ++.++++ ..++.++.
T Consensus 273 ~~~~~~~-------~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 273 VGVMRNA-------LESCLKGWGVSVLVGW 295 (374)
T ss_dssp HHHHHHH-------HHTBCTTTCEEEECSC
T ss_pred HHHHHHH-------HHHhhcCCcEEEEEcC
Confidence 4433332 4567777 77777654
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00053 Score=61.32 Aligned_cols=93 Identities=18% Similarity=0.132 Sum_probs=68.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc-------cchhhHHh------CCCccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK-------SKCDPLIS------LGAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~-------~~~~~~~~------~g~~~~~~~~~~~~~aDivv~~~p 136 (290)
..||.|+|.|..|..+++.+...|. +|+++|++. ++...+++ .......+++|+++++|++|=+.
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~S- 266 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVS- 266 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECC-
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecC-
Confidence 6899999999999999999999999 999999973 22222221 11112457999999999987553
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEecCCChh
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~ 170 (290)
. .+++ .++.++.|+++.+|+.+|+-.+.
T Consensus 267 a----pgl~--T~EmVk~Ma~~pIIfalsNPt~E 294 (398)
T 2a9f_A 267 A----PGVL--KAEWISKMAARPVIFAMANPIPE 294 (398)
T ss_dssp S----TTCC--CHHHHHTSCSSCEEEECCSSSCS
T ss_pred C----CCCC--CHHHHHhhCCCCEEEECCCCCcc
Confidence 2 2455 45667889999999999987653
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0013 Score=58.82 Aligned_cols=89 Identities=20% Similarity=0.147 Sum_probs=64.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-------CCHHHHhh-----cCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivv~~~p~ 137 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|...+ .++.+.+. ..|+|+-++..
T Consensus 192 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~ 271 (373)
T 1p0f_A 192 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGR 271 (373)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCC
Confidence 6899999999999999999999998 79999999988887777775421 12333332 47999988865
Q ss_pred hhHHHHHhcccccccccCCCC-CEEEEecC
Q 022909 138 PESAMDVACGKHGAASGMGPG-KGYVDVST 166 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~-~~lin~s~ 166 (290)
+...... ++.++++ ..++.++.
T Consensus 272 ~~~~~~~-------~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 272 IETMMNA-------LQSTYCGSGVTVVLGL 294 (373)
T ss_dssp HHHHHHH-------HHTBCTTTCEEEECCC
T ss_pred HHHHHHH-------HHHHhcCCCEEEEEcc
Confidence 4433332 4567777 77776653
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0013 Score=58.81 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=63.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-------CCHHHHhh-----cCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivv~~~p~ 137 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|...+ .++.+.+. ..|+|+.++..
T Consensus 192 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~ 271 (374)
T 2jhf_A 192 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGR 271 (374)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCCC
Confidence 6899999999999999999999998 79999999988887777665321 12333332 36888888765
Q ss_pred hhHHHHHhcccccccccCCCC-CEEEEec
Q 022909 138 PESAMDVACGKHGAASGMGPG-KGYVDVS 165 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~-~~lin~s 165 (290)
+...... ++.++++ ..++.++
T Consensus 272 ~~~~~~~-------~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 272 LDTMVTA-------LSCCQEAYGVSVIVG 293 (374)
T ss_dssp HHHHHHH-------HHHBCTTTCEEEECS
T ss_pred HHHHHHH-------HHHhhcCCcEEEEec
Confidence 4333332 4556776 6676665
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0014 Score=58.54 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=64.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-------CCHHHHhh-----cCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivv~~~p~ 137 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|...+ .++.+.+. ..|+|+-++..
T Consensus 196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~ 275 (376)
T 1e3i_A 196 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGT 275 (376)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCCC
Confidence 6899999999999999999999998 89999999988887777765421 12333332 47999888765
Q ss_pred hhHHHHHhcccccccccCCCC-CEEEEecC
Q 022909 138 PESAMDVACGKHGAASGMGPG-KGYVDVST 166 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~-~~lin~s~ 166 (290)
+...... ++.++++ ..++.++.
T Consensus 276 ~~~~~~~-------~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 276 AQTLKAA-------VDCTVLGWGSCTVVGA 298 (376)
T ss_dssp HHHHHHH-------HHTBCTTTCEEEECCC
T ss_pred HHHHHHH-------HHHhhcCCCEEEEECC
Confidence 4333332 4566777 77776653
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00049 Score=60.54 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=49.7
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHCCCeEEEEeCCcc--chhhHHhCCCccC--CCHHHHh-hcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKS--KCDPLISLGAKYQ--PSPDEVA-ASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~g~~V~~~d~~~~--~~~~~~~~g~~~~--~~~~~~~-~~aDivv~~ 134 (290)
.++|.|||.|.+|.+ +|+.|...|++|.++|.++. ..+.+++.|+... .+.+++. .++|+||..
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~S 73 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIG 73 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEEC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEEC
Confidence 589999999999995 99999999999999998753 3345666776543 3445554 479999875
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00017 Score=63.68 Aligned_cols=86 Identities=6% Similarity=0.071 Sum_probs=60.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC----CCH---HHH-hhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSP---DEV-AASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~---~~~-~~~aDivv~~~p~~~~~~ 142 (290)
.++|.|+|+|++|+.+++.|...|+ |.+.|+++++.+ +.+.+.... .+. +++ ++++|.|+++++.+....
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~ 192 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI 192 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHHH
Confidence 4689999999999999999999999 999999998887 766554321 222 223 567899999987654433
Q ss_pred HHhcccccccccCCCCCEEE
Q 022909 143 DVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~li 162 (290)
... ...+.+.++..++
T Consensus 193 ~~~----~~ar~~~~~~~ii 208 (336)
T 1lnq_A 193 HCI----LGIRKIDESVRII 208 (336)
T ss_dssp HHH----HHHHTTCTTSEEE
T ss_pred HHH----HHHHHHCCCCeEE
Confidence 332 2244555654443
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00044 Score=59.59 Aligned_cols=66 Identities=26% Similarity=0.261 Sum_probs=49.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCC-CeEEEEeCCccch--hhHHhCCCcc-------CCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKC--DPLISLGAKY-------QPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g-~~V~~~d~~~~~~--~~~~~~g~~~-------~~~~~~~~~~aDivv~~~p 136 (290)
+|+|.|.|. |.+|+.+++.|.+.| ++|.+.+|++++. ..+...++.. .+++.++++++|+|+.+.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 589999996 999999999999988 9999999987653 2233333322 1235567888999998764
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00022 Score=63.76 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=62.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHH-hCCCccC---CCHH---HHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-SLGAKYQ---PSPD---EVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~-~~g~~~~---~~~~---~~~~~aDivv~~~p~~~~~~~ 143 (290)
+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+. +.|...+ .+.+ ++....|+|+.++..+..+..
T Consensus 188 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~ 267 (366)
T 1yqd_A 188 GKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPLLP 267 (366)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCCSHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHHHHH
Confidence 78999999999999999999999999999999988877665 5554321 1222 222357888888765333332
Q ss_pred HhcccccccccCCCCCEEEEecC
Q 022909 144 VACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
. ++.++++..+++++.
T Consensus 268 ~-------~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 268 L-------FGLLKSHGKLILVGA 283 (366)
T ss_dssp H-------HHHEEEEEEEEECCC
T ss_pred H-------HHHHhcCCEEEEEcc
Confidence 2 344566667777754
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00022 Score=63.38 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=48.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccch--hhHHhC-CCc--cCC------CHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKC--DPLISL-GAK--YQP------SPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~--~~~~~~-g~~--~~~------~~~~~~~~aDivv~~~p 136 (290)
+|+|.|.| .|.+|+.+++.|...|++|.+.+|++++. +.+.+. ++. ..+ ++.++++++|+|+.+..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~ 82 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT 82 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCC
Confidence 58899999 59999999999999999999999987654 233321 221 111 25566788999987654
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0013 Score=59.03 Aligned_cols=89 Identities=17% Similarity=0.229 Sum_probs=64.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-------CCHHHHhh-----cCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivv~~~p~ 137 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|...+ .++.+.+. ..|+|+-++..
T Consensus 194 g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~ 273 (378)
T 3uko_A 194 GSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGN 273 (378)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCC
Confidence 6899999999999999999999998 89999999988887777775421 22333332 37888888866
Q ss_pred hhHHHHHhcccccccccCCCC-CEEEEecC
Q 022909 138 PESAMDVACGKHGAASGMGPG-KGYVDVST 166 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~-~~lin~s~ 166 (290)
+...... ++.++++ ..++.++.
T Consensus 274 ~~~~~~~-------~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 274 VSVMRAA-------LECCHKGWGTSVIVGV 296 (378)
T ss_dssp HHHHHHH-------HHTBCTTTCEEEECSC
T ss_pred HHHHHHH-------HHHhhccCCEEEEEcc
Confidence 4443333 4566775 66766653
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00043 Score=61.35 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=62.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-----CCHHHHhh------cCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA------SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~------~aDivv~~~p~~ 138 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|...+ .++.+.+. ..|+|+.++..+
T Consensus 168 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~ 247 (348)
T 2d8a_A 168 GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAP 247 (348)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCCH
Confidence 7899999999999999999999999 99999999887776666554311 12322222 468888887654
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
...... ++.++++..++.++.
T Consensus 248 ~~~~~~-------~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 248 KALEQG-------LQAVTPAGRVSLLGL 268 (348)
T ss_dssp HHHHHH-------HHHEEEEEEEEECCC
T ss_pred HHHHHH-------HHHHhcCCEEEEEcc
Confidence 433333 344566667776654
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0002 Score=63.95 Aligned_cols=89 Identities=15% Similarity=0.165 Sum_probs=54.1
Q ss_pred CCCeEEEEc-ccHhHHHHHHHHHHCC-CeEE-EEeCCc--cchhhH-------------HhCCCccCCCHHHHhhcCCeE
Q 022909 70 LPGRIGFLG-MGIMGTPMAQNLLKAG-CDVT-VWNRTK--SKCDPL-------------ISLGAKYQPSPDEVAASCDVT 131 (290)
Q Consensus 70 ~~~~IgiiG-~G~iG~~la~~l~~~g-~~V~-~~d~~~--~~~~~~-------------~~~g~~~~~~~~~~~~~aDiv 131 (290)
++.||+||| .|.+|+.+.+.|..+. .++. +.+++. ++.... .+..+... +.+ .++++|+|
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~-~~~-~~~~vDvv 83 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPT-DPK-LMDDVDII 83 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEEC-CGG-GCTTCCEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeC-CHH-HhcCCCEE
Confidence 357899999 6999999999987764 3554 334432 112111 11111111 223 35789999
Q ss_pred EEEeCChhHHHHHhcccccccccCCCCCEEEEecCC
Q 022909 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 132 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
+.|+|.... +... -..++.|..+||.|..
T Consensus 84 f~a~p~~~s-~~~a------~~~~~~G~~vIDlSa~ 112 (359)
T 4dpk_A 84 FSPLPQGAA-GPVE------EQFAKEGFPVISNSPD 112 (359)
T ss_dssp EECCCTTTH-HHHH------HHHHHTTCEEEECSST
T ss_pred EECCChHHH-HHHH------HHHHHCCCEEEEcCCC
Confidence 999987443 3333 1224568889999754
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0002 Score=63.95 Aligned_cols=89 Identities=15% Similarity=0.165 Sum_probs=54.2
Q ss_pred CCCeEEEEc-ccHhHHHHHHHHHHCC-CeEE-EEeCCc--cchhhH-------------HhCCCccCCCHHHHhhcCCeE
Q 022909 70 LPGRIGFLG-MGIMGTPMAQNLLKAG-CDVT-VWNRTK--SKCDPL-------------ISLGAKYQPSPDEVAASCDVT 131 (290)
Q Consensus 70 ~~~~IgiiG-~G~iG~~la~~l~~~g-~~V~-~~d~~~--~~~~~~-------------~~~g~~~~~~~~~~~~~aDiv 131 (290)
++.||+||| .|.+|+.+.+.|..+. .++. +.+++. ++.... .+..+... +.+ .++++|+|
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~-~~~-~~~~vDvv 83 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPT-DPK-LMDDVDII 83 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEEC-CGG-GCTTCCEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeC-CHH-HhcCCCEE
Confidence 357899999 6999999999987764 3554 334432 112111 11111111 223 35789999
Q ss_pred EEEeCChhHHHHHhcccccccccCCCCCEEEEecCC
Q 022909 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 132 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
+.|+|.... +... -..++.|..+||.|..
T Consensus 84 f~a~p~~~s-~~~a------~~~~~~G~~vIDlSa~ 112 (359)
T 4dpl_A 84 FSPLPQGAA-GPVE------EQFAKEGFPVISNSPD 112 (359)
T ss_dssp EECCCTTTH-HHHH------HHHHHTTCEEEECSST
T ss_pred EECCChHHH-HHHH------HHHHHCCCEEEEcCCC
Confidence 999987443 3333 1224578899999854
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00048 Score=62.82 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=71.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC---eEEEEe----CC--ccchhh---HH-------h-CCCc-cCCCHHHHhhcCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC---DVTVWN----RT--KSKCDP---LI-------S-LGAK-YQPSPDEVAASCD 129 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~---~V~~~d----~~--~~~~~~---~~-------~-~g~~-~~~~~~~~~~~aD 129 (290)
+++|.|+|+|..|++++..|...|. +|+++| |+ ..+.+. +. . .+.. ...++.+.++++|
T Consensus 186 ~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aD 265 (439)
T 2dvm_A 186 EITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDAD 265 (439)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCS
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhccCC
Confidence 6899999999999999999999998 799999 76 222111 21 1 0111 2346888999999
Q ss_pred eEEEEeCCh--hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 130 VTFAMLADP--ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 130 ivv~~~p~~--~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
++|-++|.+ ..++. ..+.|.++.++++++.-. .+ .+.+..++.|...+
T Consensus 266 VlInaT~~~~G~~~~e-------~v~~m~~~~iVfDLynP~--~t-~~~~~A~~~G~~iv 315 (439)
T 2dvm_A 266 VLISFTRPGPGVIKPQ-------WIEKMNEDAIVFPLANPV--PE-ILPEEAKKAGARIV 315 (439)
T ss_dssp EEEECSCCCSSSSCHH-------HHTTSCTTCEEEECCSSS--CS-SCHHHHHHHTCSEE
T ss_pred EEEEcCCCccCCCChH-------HHHhcCCCCEEEECCCCC--Cc-chHHHHHHcCCeEE
Confidence 999999862 21122 245678889999994432 22 23333444466666
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0002 Score=58.91 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=49.0
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----CCCcc-CCCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKY-QPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----~g~~~-~~~~~~~~~~aDivv~~~p~~ 138 (290)
|+|.|.| .|.||+.+++.|.+.|++|++.+|++++.+.... ..+.. .+++.+++++.|+||.+....
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~ 74 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG 74 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence 4799999 7999999999999999999999999865443211 11111 123455677899999887643
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00027 Score=62.43 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=56.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHC-CCeEEEEeCCc---cchhhHHh-----C---CCccCC--CHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKA-GCDVTVWNRTK---SKCDPLIS-----L---GAKYQP--SPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~-g~~V~~~d~~~---~~~~~~~~-----~---g~~~~~--~~~~~~~~aDivv~~~ 135 (290)
++||+|+| .|.+|+.+.+.|..+ .+++.....+. ..-+.+.+ . .....+ +.+++.+++|+|++|+
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~ 83 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLAT 83 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECS
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECC
Confidence 37999999 699999999999884 45766543222 21122221 1 122221 3455548999999999
Q ss_pred CChhHHHHHhcccccccccCCCCCEEEEecCCC
Q 022909 136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~ 168 (290)
|... .+... -..++.|..+||.|...
T Consensus 84 p~~~-s~~~~------~~~~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 84 AHEV-SHDLA------PQFLEAGCVVFDLSGAF 109 (337)
T ss_dssp CHHH-HHHHH------HHHHHTTCEEEECSSTT
T ss_pred ChHH-HHHHH------HHHHHCCCEEEEcCCcc
Confidence 8633 33333 12245788999998653
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00051 Score=59.76 Aligned_cols=68 Identities=31% Similarity=0.397 Sum_probs=50.2
Q ss_pred CCCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCcc-chhh---HHhCCCcc-------CCCHHHHhhcCCeEEEEeCC
Q 022909 70 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKS-KCDP---LISLGAKY-------QPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 70 ~~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~-~~~~---~~~~g~~~-------~~~~~~~~~~aDivv~~~p~ 137 (290)
|+++|.|.| .|.+|+.+++.|.+.|++|.+.+|++. +... +...++.. .+++.++++++|+||.+.+.
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~ 89 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF 89 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred CCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence 346899999 499999999999999999999999875 3222 22334432 12456678889999987753
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0015 Score=58.43 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=64.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-------CCHHHHhh-----cCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivv~~~p~ 137 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|...+ .++.+.+. ..|+|+.++..
T Consensus 191 g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~ 270 (373)
T 2fzw_A 191 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGN 270 (373)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCCc
Confidence 6899999999999999999999998 79999999988877777665321 12333332 47999888865
Q ss_pred hhHHHHHhcccccccccCCCC-CEEEEecC
Q 022909 138 PESAMDVACGKHGAASGMGPG-KGYVDVST 166 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~-~~lin~s~ 166 (290)
+...... ++.++++ ..++.++.
T Consensus 271 ~~~~~~~-------~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 271 VKVMRAA-------LEACHKGWGVSVVVGV 293 (373)
T ss_dssp HHHHHHH-------HHTBCTTTCEEEECSC
T ss_pred HHHHHHH-------HHhhccCCcEEEEEec
Confidence 4433332 4567777 77777653
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0016 Score=57.77 Aligned_cols=89 Identities=13% Similarity=0.064 Sum_probs=64.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC------CC-HHHH---h-----hcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ------PS-PDEV---A-----ASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~------~~-~~~~---~-----~~aDivv~~~ 135 (290)
+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+++.|...+ .+ .+++ . ...|+|+.++
T Consensus 169 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~ 248 (352)
T 1e3j_A 169 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCS 248 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEECC
Confidence 689999999999999999999999999999999888777777665321 12 2222 2 2489999888
Q ss_pred CChhHHHHHhcccccccccCCCCCEEEEecC
Q 022909 136 ADPESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
......... ++.++++..++.++.
T Consensus 249 g~~~~~~~~-------~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 249 GNEKCITIG-------INITRTGGTLMLVGM 272 (352)
T ss_dssp CCHHHHHHH-------HHHSCTTCEEEECSC
T ss_pred CCHHHHHHH-------HHHHhcCCEEEEEec
Confidence 654333332 456778888877754
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.001 Score=57.32 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=59.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||- .-+|+.++..|...+..|+++.... .++.+..+++||||.++..+. ++ .
T Consensus 179 Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T--------------~dl~~~~~~ADIvV~A~G~p~----~i--~- 237 (303)
T 4b4u_A 179 GKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT--------------QNLPELVKQADIIVGAVGKAE----LI--Q- 237 (303)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHHTCSEEEECSCSTT----CB--C-
T ss_pred CCEEEEEeccccccchHHHHHHhcCCEEEEecCCC--------------CCHHHHhhcCCeEEeccCCCC----cc--c-
Confidence 899999995 6679999999999999999886532 367788999999999987643 34 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++|+|+++||++-
T Consensus 238 --~d~vk~GavVIDVGi 252 (303)
T 4b4u_A 238 --KDWIKQGAVVVDAGF 252 (303)
T ss_dssp --GGGSCTTCEEEECCC
T ss_pred --cccccCCCEEEEece
Confidence 467899999999964
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00058 Score=60.29 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=63.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-----CCHHHHh----hcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVA----ASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~----~~aDivv~~~p~~~~~ 141 (290)
+++|.|+|.|.+|...++.++..|.+|++.++++++.+.+++.|.... .++.+.+ ...|+|+.++..+...
T Consensus 165 g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 244 (339)
T 1rjw_A 165 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAF 244 (339)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHHH
Confidence 689999999999999999999999999999999888777776665321 1222222 3478888887654433
Q ss_pred HHHhcccccccccCCCCCEEEEecC
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
... ++.++++..++.++.
T Consensus 245 ~~~-------~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 245 QSA-------YNSIRRGGACVLVGL 262 (339)
T ss_dssp HHH-------HHHEEEEEEEEECCC
T ss_pred HHH-------HHHhhcCCEEEEecc
Confidence 333 345566667776654
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00013 Score=60.06 Aligned_cols=67 Identities=6% Similarity=0.095 Sum_probs=46.2
Q ss_pred CCeEEEEcccHhHHHHHHHH--HHCCCeE-EEEeCCcc-chhh-HHhCCCc--cCCCHHHHhhc--CCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNL--LKAGCDV-TVWNRTKS-KCDP-LISLGAK--YQPSPDEVAAS--CDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l--~~~g~~V-~~~d~~~~-~~~~-~~~~g~~--~~~~~~~~~~~--aDivv~~~p~~ 138 (290)
..+++|+|+|++|+++++.+ ...|+++ .++|.+++ +... .. .|+. ..+++++++++ .|++++|+|..
T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i-~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~ 159 (212)
T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE-DGIPVYGISTINDHLIDSDIETAILTVPST 159 (212)
T ss_dssp CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT-TCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE-CCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence 47899999999999999984 3456765 47798887 5433 11 2333 34567777764 78888888763
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00047 Score=59.76 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=47.4
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----CCCccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----~g~~~~~~~~~~~~~aDivv~~~p 136 (290)
+|+|.|.| .|.+|+.+++.|.+.|++|++.+|++...+ +.. ..+. .+++.++++++|+||.+..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence 58999999 699999999999999999999999854433 221 1223 3456677889999987754
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00012 Score=67.80 Aligned_cols=64 Identities=13% Similarity=0.210 Sum_probs=44.7
Q ss_pred CeEEEEcccHhHHH--HHHHHHHC------CCeEEEEeCCccchhhHHh--------CC----CccCCCHHHHhhcCCeE
Q 022909 72 GRIGFLGMGIMGTP--MAQNLLKA------GCDVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVT 131 (290)
Q Consensus 72 ~~IgiiG~G~iG~~--la~~l~~~------g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDiv 131 (290)
+||+|||.|.+|.. +...+... +.+|.++|.++++.+.... .+ +..+++.++++++||+|
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~V 80 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADFI 80 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEE
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCEE
Confidence 58999999998854 33333321 2479999999877543211 12 34467899999999999
Q ss_pred EEEe
Q 022909 132 FAML 135 (290)
Q Consensus 132 v~~~ 135 (290)
+++.
T Consensus 81 i~~~ 84 (477)
T 3u95_A 81 INTA 84 (477)
T ss_dssp EECC
T ss_pred EECc
Confidence 9885
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00053 Score=59.31 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=65.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh-------CCCccCCCHHHHhh--cCCeEEEEeCCh--
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-------LGAKYQPSPDEVAA--SCDVTFAMLADP-- 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~-------~g~~~~~~~~~~~~--~aDivv~~~p~~-- 138 (290)
..+|.|||+|.+|..+++.|+..|. ++.++|.+.-....+.. .|...+....+.++ +.++-+...+..
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~l~ 115 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNIT 115 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCCTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecccCC
Confidence 6899999999999999999999997 89999986522221111 11111112222222 345555555432
Q ss_pred --hHHHHHhcc-cccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 139 --ESAMDVACG-KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 139 --~~~~~~~~~-~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
.....++.. ....+...++-.++||++- ....-..+.++..+.++.++...+.+
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D-n~~~R~~in~~c~~~~~Pli~~gv~~ 172 (292)
T 3h8v_A 116 TVENFQHFMDRISNGGLEEGKPVDLVLSCVD-NFEARMTINTACNELGQTWMESGVSE 172 (292)
T ss_dssp SHHHHHHHHHHHHHBSSSTTBCCSEEEECCS-SHHHHHHHHHHHHHHTCCEEEEEECT
T ss_pred cHHHHHHHhhhhcccccccCCCCCEEEECCc-chhhhhHHHHHHHHhCCCEEEeeeec
Confidence 122222200 0000011134457787743 33344456667777788887755543
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00043 Score=63.54 Aligned_cols=99 Identities=19% Similarity=0.278 Sum_probs=61.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CC---eEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GC---DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~---~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.+||.|||+|.||+.++..+... ++ +|++.|+..... ++.+.. ...++...+ ........+
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~------------~~~~~~-g~~~~~~~V-dadnv~~~l- 77 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV------------DVAQQY-GVSFKLQQI-TPQNYLEVI- 77 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC------------CHHHHH-TCEEEECCC-CTTTHHHHT-
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhh------------hHHhhc-CCceeEEec-cchhHHHHH-
Confidence 58899999999999999999874 45 788888765432 112222 123333333 223333433
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCcc
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 191 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~ 191 (290)
+ +.++++.++||++ .+.....+.+++.+.|++|++..+
T Consensus 78 --~---aLl~~~DvVIN~s--~~~~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 78 --G---STLEENDFLIDVS--IGISSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp --G---GGCCTTCEEEECC--SSSCHHHHHHHHHHHTCEEEESSC
T ss_pred --H---HHhcCCCEEEECC--ccccCHHHHHHHHHcCCCEEECCC
Confidence 1 2234457888864 334455677777788899999654
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00062 Score=58.75 Aligned_cols=67 Identities=22% Similarity=0.333 Sum_probs=48.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccc------hh---hHHhCCCcc-------CCCHHHHhhcCCeEEE
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK------CD---PLISLGAKY-------QPSPDEVAASCDVTFA 133 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~------~~---~~~~~g~~~-------~~~~~~~~~~aDivv~ 133 (290)
+++|.|.|. |.+|+.+++.|.+.|++|.+.+|++.. .+ .+...++.. .+++.++++++|+||.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 578999995 999999999999999999999997532 11 112234322 1235667788999998
Q ss_pred EeCC
Q 022909 134 MLAD 137 (290)
Q Consensus 134 ~~p~ 137 (290)
+.+.
T Consensus 84 ~a~~ 87 (308)
T 1qyc_A 84 TVGS 87 (308)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 8754
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00014 Score=64.41 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=52.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCC---CeEEEEe-CC-ccchhhHHhCCCccCCCH-HHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAG---CDVTVWN-RT-KSKCDPLISLGAKYQPSP-DEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g---~~V~~~d-~~-~~~~~~~~~~g~~~~~~~-~~~~~~aDivv~~~p~~~~~~~ 143 (290)
++||+|+| +|.+|+.+.+.|...+ +++.... ++ ..+.-.+....+... +. .+.++++|+|+.|+|... ...
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~-~~~~~~~~~vDvVf~a~g~~~-s~~ 80 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQ-NVEEFDWSQVHIALFSAGGEL-SAK 80 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEE-EGGGCCGGGCSEEEECSCHHH-HHH
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEe-cCChHHhcCCCEEEECCCchH-HHH
Confidence 47999999 9999999999998873 4555544 32 211111111111111 11 123468999999997643 333
Q ss_pred HhcccccccccCCCCCEEEEecCC
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
.. -..++.|..+|+.|..
T Consensus 81 ~a------~~~~~~G~~vId~s~~ 98 (336)
T 2r00_A 81 WA------PIAAEAGVVVIDNTSH 98 (336)
T ss_dssp HH------HHHHHTTCEEEECSST
T ss_pred HH------HHHHHcCCEEEEcCCc
Confidence 32 1234567888988754
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0017 Score=57.48 Aligned_cols=90 Identities=12% Similarity=0.046 Sum_probs=64.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc------CCCHHHHhh-----cCCeEEEEeCCh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY------QPSPDEVAA-----SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~------~~~~~~~~~-----~aDivv~~~p~~ 138 (290)
+++|.|+|. |.+|..+++.++..|.+|++.++++++.+.+++.|... ..++.+.+. ..|+|+.++..+
T Consensus 170 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~ 249 (347)
T 2hcy_A 170 GHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSE 249 (347)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSCH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCcH
Confidence 689999998 99999999999999999999999988776666655421 123444443 378888887654
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
...... ++.++++..+++++..
T Consensus 250 ~~~~~~-------~~~l~~~G~iv~~g~~ 271 (347)
T 2hcy_A 250 AAIEAS-------TRYVRANGTTVLVGMP 271 (347)
T ss_dssp HHHHHH-------TTSEEEEEEEEECCCC
T ss_pred HHHHHH-------HHHHhcCCEEEEEeCC
Confidence 433332 4566777777777643
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0014 Score=58.23 Aligned_cols=89 Identities=19% Similarity=0.181 Sum_probs=64.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-C-C---HHHH---h-----hcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-P-S---PDEV---A-----ASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-~-~---~~~~---~-----~~aDivv~~~p 136 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|...+ + + .++. + ...|+|+.++.
T Consensus 172 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~g 251 (356)
T 1pl8_A 172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTG 251 (356)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECCC
Confidence 6899999999999999999999999 89999999888777777765321 1 1 1221 1 24899999886
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEecC
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.+...... ++.++++..++.++.
T Consensus 252 ~~~~~~~~-------~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 252 AEASIQAG-------IYATRSGGTLVLVGL 274 (356)
T ss_dssp CHHHHHHH-------HHHSCTTCEEEECSC
T ss_pred ChHHHHHH-------HHHhcCCCEEEEEec
Confidence 64333332 456788888887764
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00054 Score=61.30 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=65.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC---CCH---HHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSP---DEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~---~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+++.|...+ .+. +++....|+|+.++..+......
T Consensus 195 g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~ 274 (369)
T 1uuf_A 195 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDF 274 (369)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHHHHHH
Confidence 689999999999999999999999999999999988877777665321 121 12223579999888654333333
Q ss_pred hcccccccccCCCCCEEEEecCC
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
++.++++..++.++..
T Consensus 275 -------~~~l~~~G~iv~~G~~ 290 (369)
T 1uuf_A 275 -------TTLLKRDGTMTLVGAP 290 (369)
T ss_dssp -------HTTEEEEEEEEECCCC
T ss_pred -------HHHhccCCEEEEeccC
Confidence 4556777777777543
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0005 Score=59.33 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=36.4
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
++++.|+| .|.+|+++++.|...|.+|++++|++++.+.+.
T Consensus 119 gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~ 160 (287)
T 1lu9_A 119 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA 160 (287)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHH
Confidence 78999999 999999999999999999999999977655443
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00016 Score=64.59 Aligned_cols=89 Identities=12% Similarity=0.152 Sum_probs=52.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCC---eEEEEe-CC-ccchhhHHhCCCccC-CCHHHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGC---DVTVWN-RT-KSKCDPLISLGAKYQ-PSPDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~---~V~~~d-~~-~~~~~~~~~~g~~~~-~~~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
++||+||| .|.+|+.+.+.|...++ ++.... ++ ..+.-.+........ .+. +.++++|+|+.|+|.. ..+.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~-~~~~~~Dvvf~a~~~~-~s~~ 79 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTE-TAFEGVDIALFSAGSS-TSAK 79 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCT-TTTTTCSEEEECSCHH-HHHH
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCH-HHhcCCCEEEECCChH-hHHH
Confidence 57999999 79999999999998765 333333 22 111111110011111 111 3357899999999753 3333
Q ss_pred HhcccccccccCCCCCEEEEecCC
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
.. -..++.|..+||.|..
T Consensus 80 ~a------~~~~~~G~~vIDlSa~ 97 (366)
T 3pwk_A 80 YA------PYAVKAGVVVVDNTSY 97 (366)
T ss_dssp HH------HHHHHTTCEEEECSST
T ss_pred HH------HHHHHCCCEEEEcCCc
Confidence 33 1224568889999864
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.002 Score=58.24 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=63.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-----CCHHHHhh------cCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA------SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~------~aDivv~~~p~~ 138 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|...+ .++.+.+. ..|+|+-++..+
T Consensus 214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~~ 293 (404)
T 3ip1_A 214 GDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGVP 293 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCCc
Confidence 6899999999999999999999999 89999999988877777665321 22222222 488898888765
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
..+...+ .+.+...++++..++.++.
T Consensus 294 ~~~~~~~--~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 294 QLVWPQI--EEVIWRARGINATVAIVAR 319 (404)
T ss_dssp HHHHHHH--HHHHHHCSCCCCEEEECSC
T ss_pred HHHHHHH--HHHHHhccCCCcEEEEeCC
Confidence 3232222 0111133377777777754
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0008 Score=60.06 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=64.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc---cchhhHHhCCCccCC--CHHHHh----hcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK---SKCDPLISLGAKYQP--SPDEVA----ASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~---~~~~~~~~~g~~~~~--~~~~~~----~~aDivv~~~p~~~~~ 141 (290)
+++|.|+|.|.+|...++.++..|.+|++.++++ ++.+.+++.|...++ ++.+.+ ...|+|+.++..+..+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 260 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVNI 260 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCTHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChHHH
Confidence 6899999999999999999999999999999988 776666666654331 111222 2479999888764444
Q ss_pred -HHHhcccccccccCCCCCEEEEecCC
Q 022909 142 -MDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 142 -~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
... ++.++++..+++++..
T Consensus 261 ~~~~-------~~~l~~~G~iv~~g~~ 280 (366)
T 2cdc_A 261 LGNV-------IPLLGRNGVLGLFGFS 280 (366)
T ss_dssp HHHH-------GGGEEEEEEEEECSCC
T ss_pred HHHH-------HHHHhcCCEEEEEecC
Confidence 333 3556777777777643
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0009 Score=57.97 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=61.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCC------HHHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS------PDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~------~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
+.+|.|+|+ |.+|...++.++..|.+|++.++++++.+.+++.|....-+ ..+.+...|+|+. +.. .....
T Consensus 126 g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~~~~~ 203 (302)
T 1iz0_A 126 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-KEVEE 203 (302)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-TTHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-HHHHH
Confidence 689999998 99999999999999999999999988887777766542211 1222346788888 754 33332
Q ss_pred HhcccccccccCCCCCEEEEecC
Q 022909 144 VACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++.++++..++.++.
T Consensus 204 -------~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 204 -------SLGLLAHGGRLVYIGA 219 (302)
T ss_dssp -------HHTTEEEEEEEEEC--
T ss_pred -------HHHhhccCCEEEEEeC
Confidence 2456677777776643
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0011 Score=57.90 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=48.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc-------CCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivv~~~p 136 (290)
+|+|.|.| .|.||+.+++.|...|++|++.+|++.+.+.+.+.++.. .+++.++++++|+||.+..
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 46999999 599999999999999999999999887655443323321 1235567788999987654
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00053 Score=61.10 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=64.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCC------CHHHHh-hcCCeEEEEeCC--hhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP------SPDEVA-ASCDVTFAMLAD--PESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~------~~~~~~-~~aDivv~~~p~--~~~~ 141 (290)
+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+++.|...+- +..+.+ ...|+|+.+++. +...
T Consensus 180 g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~ 259 (360)
T 1piw_A 180 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDF 259 (360)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHHH
Confidence 6899999999999999999999999999999999888777776653221 222222 357999988865 2222
Q ss_pred HHHhcccccccccCCCCCEEEEecC
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+..++.++++..++.++.
T Consensus 260 -------~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 260 -------NIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp -------TTGGGGEEEEEEEEECCC
T ss_pred -------HHHHHHhcCCCEEEEecC
Confidence 233566777777777754
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0012 Score=58.91 Aligned_cols=45 Identities=27% Similarity=0.266 Sum_probs=40.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+++.|.
T Consensus 190 g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa 234 (363)
T 3uog_A 190 GDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA 234 (363)
T ss_dssp TCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC
Confidence 689999999999999999999999999999999887776666554
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0012 Score=58.21 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=62.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-----CCHHHHhh----cCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA----SCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~----~aDivv~~~p~~~~~ 141 (290)
+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+++.|...+ .+..+.+. ..|+|+.++......
T Consensus 167 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~~ 246 (340)
T 3s2e_A 167 GQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKAF 246 (340)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHHH
Confidence 689999999999999999999999999999999988887777665321 12322222 467777776554433
Q ss_pred HHHhcccccccccCCCCCEEEEec
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
... ++.++++..++.++
T Consensus 247 ~~~-------~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 247 SQA-------IGMVRRGGTIALNG 263 (340)
T ss_dssp HHH-------HHHEEEEEEEEECS
T ss_pred HHH-------HHHhccCCEEEEeC
Confidence 333 34556666666664
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0042 Score=55.04 Aligned_cols=89 Identities=20% Similarity=0.289 Sum_probs=56.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh------CCCccC-CCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS------LGAKYQ-PSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~------~g~~~~-~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
+.||+||| .|..|+.+.+.|..+.. ++.........-+.+.+ ..+... .+.+++..++|++++|+|... .
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~-s 91 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA-S 91 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH-H
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHH-H
Confidence 47899998 69999999999998753 66544432211122221 122221 245555588999999998743 4
Q ss_pred HHHhcccccccccCCCCCEEEEecCCC
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~ 168 (290)
+.+. +.+ .|..+||.|+.-
T Consensus 92 ~~~~-------~~~-~g~~VIDlSsdf 110 (351)
T 1vkn_A 92 YDLV-------REL-KGVKIIDLGADF 110 (351)
T ss_dssp HHHH-------TTC-CSCEEEESSSTT
T ss_pred HHHH-------HHh-CCCEEEECChhh
Confidence 4443 223 789999998654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00086 Score=55.74 Aligned_cols=67 Identities=22% Similarity=0.243 Sum_probs=48.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHhCCC-------ccCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGA-------KYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~~g~-------~~~~~~~~~~~~aDivv~~~p~ 137 (290)
+|+|.|.| .|.||+.+++.|...|+ +|.+.+|++++.+.....++ ...++++++++..|+||.+...
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~ 94 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT 94 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCc
Confidence 68999999 69999999999999999 99999998765432211111 1123455566678888777643
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00098 Score=59.22 Aligned_cols=66 Identities=17% Similarity=0.324 Sum_probs=49.2
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHC-CCeEEEEeCCccchhhHHh-CCCc--------cCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLIS-LGAK--------YQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~-g~~V~~~d~~~~~~~~~~~-~g~~--------~~~~~~~~~~~aDivv~~~p 136 (290)
+|+|.|.| .|.||+.+++.|... |++|++.+|++++...+.. .++. ...+++++++++|+||-+..
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~ 100 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA 100 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence 58999999 699999999999987 9999999998876554433 2221 11234567778999987543
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0012 Score=58.16 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=48.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCc----cchh---hHHhCCCcc-------CCCHHHHhh--cCCeEEE
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTK----SKCD---PLISLGAKY-------QPSPDEVAA--SCDVTFA 133 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~----~~~~---~~~~~g~~~-------~~~~~~~~~--~aDivv~ 133 (290)
+++|.|.|. |.+|+.+++.|...|++|.+.+|++ ++.. .+...++.. .+++.++++ ++|+||.
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~ 89 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS 89 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence 478999997 9999999999999999999999976 2222 122233322 234566788 8999988
Q ss_pred EeCC
Q 022909 134 MLAD 137 (290)
Q Consensus 134 ~~p~ 137 (290)
+...
T Consensus 90 ~a~~ 93 (346)
T 3i6i_A 90 TVGG 93 (346)
T ss_dssp CCCG
T ss_pred CCch
Confidence 7764
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00085 Score=59.29 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=60.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHhCCCccCCCHH---HH---hh---cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAKYQPSPD---EV---AA---SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~~~~~~~---~~---~~---~aDivv~~~p~~~ 139 (290)
+.+|.|+|.|.+|...++.++.. |.+|++.++++++.+.+++.|...+-+.. +. +. ..|+|+.++..+.
T Consensus 171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~~ 250 (344)
T 2h6e_A 171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTEE 250 (344)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCChH
Confidence 78999999999999999999998 99999999998887777666653322221 11 11 3677777776533
Q ss_pred HHHHHhcccccccccCCCCCEEEEec
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
..... ++.++++..++.++
T Consensus 251 ~~~~~-------~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 251 TTYNL-------GKLLAQEGAIILVG 269 (344)
T ss_dssp HHHHH-------HHHEEEEEEEEECC
T ss_pred HHHHH-------HHHhhcCCEEEEeC
Confidence 33332 34455666666554
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0009 Score=59.10 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=24.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVTVW 100 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~~~ 100 (290)
..||||+|+|+||+.+++.+... +++|...
T Consensus 3 ~ikVgI~G~GrIGr~l~R~l~~~p~vevvaI 33 (337)
T 3e5r_O 3 KIKIGINGFGRIGRLVARVALQSEDVELVAV 33 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSEEEEEE
T ss_pred ceEEEEECcCHHHHHHHHHHhCCCCeEEEEE
Confidence 36999999999999999999876 4566544
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0009 Score=57.87 Aligned_cols=67 Identities=25% Similarity=0.345 Sum_probs=49.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCcc-----chhhH---HhCCCcc-------CCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKS-----KCDPL---ISLGAKY-------QPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~-----~~~~~---~~~g~~~-------~~~~~~~~~~aDivv~~ 134 (290)
+|+|.|.| .|.+|+.+++.|.+.|++|.+.+|++. +.+.+ ...++.. .+++.++++++|+|+.+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 83 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 83 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence 57899999 599999999999999999999999843 22222 2233322 12456778899999987
Q ss_pred eCC
Q 022909 135 LAD 137 (290)
Q Consensus 135 ~p~ 137 (290)
.+.
T Consensus 84 a~~ 86 (313)
T 1qyd_A 84 LAG 86 (313)
T ss_dssp CCC
T ss_pred Ccc
Confidence 754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0015 Score=52.74 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=37.2
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG 114 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g 114 (290)
+++|.|+| .|.+|..+++.++..|.+|++.++++++.+.+++.|
T Consensus 39 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g 83 (198)
T 1pqw_A 39 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLG 83 (198)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTC
T ss_pred CCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC
Confidence 68999999 699999999999999999999999887665554433
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0021 Score=56.10 Aligned_cols=66 Identities=21% Similarity=0.155 Sum_probs=48.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-------CCC--------ccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------LGA--------KYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-------~g~--------~~~~~~~~~~~~aDivv~~ 134 (290)
+++|.|.|. |.||+.+++.|...|++|++.+|++++.+.+.+ .++ ....++++++++.|+||.+
T Consensus 11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~ 90 (342)
T 1y1p_A 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHI 90 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEEC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEEEe
Confidence 689999996 999999999999999999999998765433221 111 1123455666778988876
Q ss_pred eC
Q 022909 135 LA 136 (290)
Q Consensus 135 ~p 136 (290)
..
T Consensus 91 A~ 92 (342)
T 1y1p_A 91 AS 92 (342)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0018 Score=57.83 Aligned_cols=89 Identities=21% Similarity=0.181 Sum_probs=62.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-----CCHHHHhhc--------CCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAAS--------CDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~~--------aDivv~~~p 136 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|...+ .+..+.+.+ .|+|+-++.
T Consensus 183 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G 262 (370)
T 4ej6_A 183 GSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAG 262 (370)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECCC
Confidence 6899999999999999999999999 89999999888776666665321 233333332 688887775
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEecC
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
........ ++.++++..++.++.
T Consensus 263 ~~~~~~~~-------~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 263 VAETVKQS-------TRLAKAGGTVVILGV 285 (370)
T ss_dssp CHHHHHHH-------HHHEEEEEEEEECSC
T ss_pred CHHHHHHH-------HHHhccCCEEEEEec
Confidence 44333332 345666666666653
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0012 Score=57.18 Aligned_cols=65 Identities=9% Similarity=0.120 Sum_probs=40.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhc--CCeEEEEeC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivv~~~p 136 (290)
+|+|.|.|. |.||+.+++.|...|++|++.+|+++... .....+....+++++++. .|+||.+..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 69 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAA 69 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence 689999996 99999999999999999999998754311 111122223456667765 899887654
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.001 Score=58.41 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=47.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCCcc--chh----hHHhCC------CccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKS--KCD----PLISLG------AKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~~~--~~~----~~~~~g------~~~~~~~~~~~~~aDi 130 (290)
.|||.|+|. |.||+.++..|...|+ +|.++|+.+. +.. .+.+.. +....++.++++++|+
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D~ 83 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCCE
Confidence 689999996 9999999999998886 8999998641 111 111111 1222467788899999
Q ss_pred EEEEeC
Q 022909 131 TFAMLA 136 (290)
Q Consensus 131 vv~~~p 136 (290)
|+.+..
T Consensus 84 Vih~Ag 89 (327)
T 1y7t_A 84 ALLVGA 89 (327)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 987643
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0016 Score=56.97 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=48.0
Q ss_pred CCCCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-------CCCcc-------CCCHHHHhh--cCCeE
Q 022909 69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------LGAKY-------QPSPDEVAA--SCDVT 131 (290)
Q Consensus 69 ~~~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-------~g~~~-------~~~~~~~~~--~aDiv 131 (290)
+++|+|.|.| .|.||+.+++.|...|++|.+.+|++++.....+ .++.. ..+++++++ ..|+|
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (341)
T 3enk_A 3 STKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAA 82 (341)
T ss_dssp CSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEE
T ss_pred CCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEE
Confidence 3468999998 5999999999999999999999998665433221 12211 123455666 68988
Q ss_pred EEEeC
Q 022909 132 FAMLA 136 (290)
Q Consensus 132 v~~~p 136 (290)
+.+..
T Consensus 83 ih~A~ 87 (341)
T 3enk_A 83 IHFAA 87 (341)
T ss_dssp EECCC
T ss_pred EECcc
Confidence 87653
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00069 Score=59.72 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=31.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|||+|.+|..+++.|...|. +++++|++.
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 7999999999999999999999997 788998754
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0013 Score=54.67 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=48.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHhCCCc-------cCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivv~~~p 136 (290)
+++|.|.| .|.||+.+++.|.+. |++|++.+|++++.+.+ ..++. ..+++++++++.|+||.+..
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 78 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS 78 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence 68999999 699999999999998 89999999987654433 11121 11245667788999988754
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0011 Score=57.17 Aligned_cols=67 Identities=21% Similarity=0.270 Sum_probs=49.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCc-------cchhhH---HhCCCcc-------CCCHHHHhhcCCeEE
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTK-------SKCDPL---ISLGAKY-------QPSPDEVAASCDVTF 132 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~-------~~~~~~---~~~g~~~-------~~~~~~~~~~aDivv 132 (290)
+++|.|.|. |.+|+.+++.|.+.|++|.+.+|++ ++.+.+ ...++.. .+++.++++++|+||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 81 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI 81 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence 578999995 9999999999999999999999986 332222 2234322 124566788899999
Q ss_pred EEeCC
Q 022909 133 AMLAD 137 (290)
Q Consensus 133 ~~~p~ 137 (290)
.+.+.
T Consensus 82 ~~a~~ 86 (307)
T 2gas_A 82 CAAGR 86 (307)
T ss_dssp ECSSS
T ss_pred ECCcc
Confidence 87764
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0015 Score=58.27 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=62.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-----CCHHHHhh-----cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA-----SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~-----~aDivv~~~p~~~ 139 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|...+ .++.+.+. ..|+|+.++..+.
T Consensus 191 g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~~ 270 (371)
T 1f8f_A 191 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPE 270 (371)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCHH
Confidence 6899999999999999999999998 69999999888777766664321 12323222 3688888876533
Q ss_pred HHHHHhcccccccccCCCCCEEEEecC
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
..... ++.++++..++.++.
T Consensus 271 ~~~~~-------~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 271 ILKQG-------VDALGILGKIAVVGA 290 (371)
T ss_dssp HHHHH-------HHTEEEEEEEEECCC
T ss_pred HHHHH-------HHHHhcCCEEEEeCC
Confidence 33332 455667777776653
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0016 Score=55.41 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=35.3
Q ss_pred CCCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 70 ~~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
+++++.|.|. |.||+++++.|...|++|.+.+|++++.+..
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~ 44 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAI 44 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 3788888885 8999999999999999999999998765544
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0011 Score=58.89 Aligned_cols=89 Identities=20% Similarity=0.166 Sum_probs=63.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHH-hCCCccC---CCHHH---HhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-SLGAKYQ---PSPDE---VAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~-~~g~~~~---~~~~~---~~~~aDivv~~~p~~~~~~~ 143 (290)
+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+. +.|...+ .+.+. +....|+|+-++..+.....
T Consensus 181 g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~~~~ 260 (357)
T 2cf5_A 181 GLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALEP 260 (357)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCCSHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHHHHH
Confidence 78999999999999999999999999999999988777666 5564321 22222 22347999988865333333
Q ss_pred HhcccccccccCCCCCEEEEecC
Q 022909 144 VACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
. ++.++++..++.++.
T Consensus 261 ~-------~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 261 Y-------LSLLKLDGKLILMGV 276 (357)
T ss_dssp H-------HTTEEEEEEEEECSC
T ss_pred H-------HHHhccCCEEEEeCC
Confidence 2 355677777777754
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0017 Score=55.82 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=35.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
++++.|.| .|.||+++++.|++.|++|.+.+|+.++.++..
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 69 (283)
T 3v8b_A 28 SPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVA 69 (283)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 67888888 589999999999999999999999987655443
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0028 Score=56.22 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=25.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWN 101 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~~~d 101 (290)
+.||||+|+|+||+.+.+.|... .++|...+
T Consensus 17 ~ikVgI~G~G~iGr~llR~l~~~p~veivain 48 (354)
T 3cps_A 17 QGTLGINGFGRIGRLVLRACMERNDITVVAIN 48 (354)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred ceEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence 46999999999999999999876 56766554
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00091 Score=58.18 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=49.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCc-c-----chhhH---HhCCCcc-------CCCHHHHhhcCCeEEE
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTK-S-----KCDPL---ISLGAKY-------QPSPDEVAASCDVTFA 133 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~-~-----~~~~~---~~~g~~~-------~~~~~~~~~~aDivv~ 133 (290)
+|+|.|.|. |.+|+.+++.|.+.|++|.+.+|++ . +.+.+ ...++.. .+++.++++++|+||.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~ 83 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS 83 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 578999995 9999999999999999999999986 2 22211 2233321 1246677889999998
Q ss_pred EeCC
Q 022909 134 MLAD 137 (290)
Q Consensus 134 ~~p~ 137 (290)
+...
T Consensus 84 ~a~~ 87 (321)
T 3c1o_A 84 ALPF 87 (321)
T ss_dssp CCCG
T ss_pred CCCc
Confidence 7653
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00077 Score=56.37 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=32.1
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccch
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC 107 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~ 107 (290)
++|.|.|. |.||+.+++.|...|++|++.+|++++.
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~ 38 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADI 38 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHc
Confidence 57999985 9999999999999999999999987653
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0012 Score=56.35 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=49.3
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHhCCCcc-------CCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivv~~~p 136 (290)
|+|.|.|. |.||+.+++.|... |++|.+.+|++++...+...++.. .+++.++++++|+|+.+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 46899996 99999999999998 999999999887765554433321 1235567788999987654
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0022 Score=57.55 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=40.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+|.|.+|...++.++..| .+|++.++++++.+.+++.|.
T Consensus 196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa 241 (380)
T 1vj0_A 196 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 241 (380)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC
Confidence 689999999999999999999999 699999999888777766664
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0021 Score=56.84 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=49.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHC-CC-eEEEEeCCccchhhHHh----CCCc-------cCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKA-GC-DVTVWNRTKSKCDPLIS----LGAK-------YQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~-g~-~V~~~d~~~~~~~~~~~----~g~~-------~~~~~~~~~~~aDivv~~~p 136 (290)
+|+|.|.| .|.||+.+++.|... |+ +|++++|++.+...+.+ .++. -.+++.+++++.|+||.+..
T Consensus 21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~Aa 100 (344)
T 2gn4_A 21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAAA 100 (344)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEECCC
Confidence 78999999 599999999999998 97 99999998766544332 1221 11234566778999988764
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0021 Score=59.26 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=73.6
Q ss_pred CCeEEEEccc----HhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMG----IMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G----~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
.++|+|||.+ ++|..+.+.+...| ..|+.+++..+.. .|...+.++.|+.+..|++++++|. +.+..++
T Consensus 8 p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i-----~G~~~y~sl~~lp~~~Dlavi~vp~-~~~~~~v 81 (457)
T 2csu_A 8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPK-RFVKDTL 81 (457)
T ss_dssp CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCH-HHHHHHH
T ss_pred CCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE-----CCEeccCCHHHcCCCCCEEEEecCH-HHHHHHH
Confidence 6899999997 89999999999885 6777777653322 4677778888888889999999986 4555555
Q ss_pred cccccccccCCCCCEEEEecCCCh--hH-----HHHHHHHHHHcCCcEEe
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDG--DT-----SKLINGHIKATGASFLE 188 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~--~~-----~~~l~~~l~~~~~~~~~ 188 (290)
++..+. .-. .+|..+.+-+ .+ .+++.+.+++.+++++.
T Consensus 82 ---~e~~~~-Gi~-~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viG 126 (457)
T 2csu_A 82 ---IQCGEK-GVK-GVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (457)
T ss_dssp ---HHHHHH-TCC-EEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred ---HHHHHc-CCC-EEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEc
Confidence 222222 222 3344444332 22 66788888888888774
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0014 Score=58.83 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=53.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCC-CeEE-EE-eCC-ccc-hhhH-------------HhCCCccCCCHHHHhhcCCeE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVT-VW-NRT-KSK-CDPL-------------ISLGAKYQPSPDEVAASCDVT 131 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g-~~V~-~~-d~~-~~~-~~~~-------------~~~g~~~~~~~~~~~~~aDiv 131 (290)
++|||||| .|..|+.+.+.|..+. .++. ++ +++ ..+ .... .+.-+... +.++.++++|+|
T Consensus 19 ~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~-~~~~~~~~~Dvv 97 (381)
T 3hsk_A 19 VKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQEC-KPEGNFLECDVV 97 (381)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEES-SSCTTGGGCSEE
T ss_pred ccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeC-chhhhcccCCEE
Confidence 47899999 6999999999998765 3664 33 332 211 1110 11111111 112146789999
Q ss_pred EEEeCChhHHHHHhcccccccccCCCCCEEEEecCC
Q 022909 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 132 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
++|+|... .+... + ...+.|..+||.|..
T Consensus 98 f~alp~~~-s~~~~---~---~~~~~G~~VIDlSa~ 126 (381)
T 3hsk_A 98 FSGLDADV-AGDIE---K---SFVEAGLAVVSNAKN 126 (381)
T ss_dssp EECCCHHH-HHHHH---H---HHHHTTCEEEECCST
T ss_pred EECCChhH-HHHHH---H---HHHhCCCEEEEcCCc
Confidence 99997633 33333 1 224568889999753
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0027 Score=57.09 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=44.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchh-hHHhCCC-ccCCC---HHHHhhcCCeEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGA-KYQPS---PDEVAASCDVTFA 133 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~-~~~~~g~-~~~~~---~~~~~~~aDivv~ 133 (290)
+++|+|||.|.+|+.+++.+++.|++|+++|+++.... ...+..+ ....+ +.++++++|+|+.
T Consensus 14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~ 81 (389)
T 3q2o_A 14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTY 81 (389)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeee
Confidence 78999999999999999999999999999998764321 1111000 11122 5567788998854
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0042 Score=54.45 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=60.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC------CCHHHHhh-----cCCeEEEEeCCh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ------PSPDEVAA-----SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~------~~~~~~~~-----~aDivv~~~p~~ 138 (290)
+++|.|+|+ |.||..+++.++..|.+|++.++++++.+.+++.|.... .+..+.+. ..|+++.++..
T Consensus 146 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~- 224 (333)
T 1v3u_A 146 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG- 224 (333)
T ss_dssp SCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH-
T ss_pred CCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh-
Confidence 689999997 999999999999999999999999877776655554211 23333332 35777776642
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.... ..++.++++..++.++.
T Consensus 225 ~~~~-------~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 225 EFLN-------TVLSQMKDFGKIAICGA 245 (333)
T ss_dssp HHHH-------HHHTTEEEEEEEEECCC
T ss_pred HHHH-------HHHHHHhcCCEEEEEec
Confidence 2222 22455667777776653
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.002 Score=57.07 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=39.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|.
T Consensus 167 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa 212 (352)
T 3fpc_A 167 GDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA 212 (352)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC
Confidence 6899999999999999999999998 89999999887776666654
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0022 Score=56.55 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=58.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCcc-----CCCHHHHhh-----cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKY-----QPSPDEVAA-----SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~-----~~~~~~~~~-----~aDivv~~~p~~~ 139 (290)
+.+|.|+|.|.+|...++.++..|. +|++.++++++.+.+++. ... ..++.+.+. ..|+|+.++..+.
T Consensus 165 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~ 243 (343)
T 2dq4_A 165 GKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEA 243 (343)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 7899999999999999999999999 999999988766554433 211 112333332 4677777775533
Q ss_pred HHHHHhcccccccccCCCCCEEEEecC
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
..... ++.++++..++.++.
T Consensus 244 ~~~~~-------~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 244 AIHQG-------LMALIPGGEARILGI 263 (343)
T ss_dssp HHHHH-------HHHEEEEEEEEECCC
T ss_pred HHHHH-------HHHHhcCCEEEEEec
Confidence 33332 344556666666643
|
| >2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.019 Score=50.74 Aligned_cols=157 Identities=9% Similarity=0.003 Sum_probs=98.7
Q ss_pred CCeEEEEcccHhHHHHHHHH---HHC--CCeEE-EEeCCccchhhHHh------CCCccCCCHHHHhh-cCCeEEEEe-C
Q 022909 71 PGRIGFLGMGIMGTPMAQNL---LKA--GCDVT-VWNRTKSKCDPLIS------LGAKYQPSPDEVAA-SCDVTFAML-A 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l---~~~--g~~V~-~~d~~~~~~~~~~~------~g~~~~~~~~~~~~-~aDivv~~~-p 136 (290)
.+++.|.|.|.+|+..++.. ..+ ++++. ++ +.. .-..+.+ .|+....|++++++ .+|++++.+ |
T Consensus 22 ~~~~vi~~~g~~g~~~aKta~gllr~~~~~~iVgvi-~~~-~Gkd~ge~~~g~~~gipv~~d~~~al~~~~d~lvig~a~ 99 (350)
T 2g0t_A 22 GTPAAIVAWGQLGTAHAKTTYGLLRHSRLFKPVCVV-AEH-EGKMASDFVKPVRYDVPVVSSVEKAKEMGAEVLIIGVSN 99 (350)
T ss_dssp TEEEEEECTTTTTSGGGHHHHHHHHHCSSEEEEEEE-SSC-TTCBGGGTCC-CCSCCBEESSHHHHHHTTCCEEEECCCS
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHhhCCCCeEEEEe-ecC-CCCcHHHhhCCCCCCceeeCCHHHHHhcCCCEEEEEecC
Confidence 57899999999999888854 554 46654 44 321 1111221 35777789999987 699999986 4
Q ss_pred ChhHHH-HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC-------CCccccCCceEEEec
Q 022909 137 DPESAM-DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG-------SKKPAEDGQLIFLAA 208 (290)
Q Consensus 137 ~~~~~~-~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~-------~~~~~~~~~~~~~~~ 208 (290)
...... ... +.+.+.++.|.-+|+.......+..++.++.+++|..+++...-. +.......+.++++|
T Consensus 100 ~gg~l~~~~~---~~I~~Al~~G~nVvsglh~~l~~~pel~~~A~~~Gv~i~dvr~~p~~l~v~~g~i~~i~~~ri~v~G 176 (350)
T 2g0t_A 100 PGGYLEEQIA---TLVKKALSLGMDVISGLHFKISQQTEFLKIAHENGTRIIDIRIPPLELDVLRGGIYRKKIKVVGVFG 176 (350)
T ss_dssp CCHHHHHHHH---HHHHHHHHTTCEEEECCCC--CCHHHHHHHHHHHTCCEEESSSCCSSCCCCCSGGGGCCSEEEEEEE
T ss_pred CCCCCCHHHH---HHHHHHHHcCCcEEeCChhhhhCCHHHHHHHHHCCCEEEEeCcCCCcccccccceeeecceEEEEec
Confidence 333333 222 445677889999999888877777888888888888888832111 111111234455566
Q ss_pred CCH-----HHHHHHHHHHHHhCCcEEEeC
Q 022909 209 GDK-----SLYNTVAPLLDIMGKSRFYLG 232 (290)
Q Consensus 209 ~~~-----~~~~~v~~ll~~~G~~~~~~~ 232 (290)
.+. .....+.+.+..-|.++.+++
T Consensus 177 TDt~vGKt~t~~~L~~~l~~~G~~v~~v~ 205 (350)
T 2g0t_A 177 TDCVVGKRTTAVQLWERALEKGIKAGFLA 205 (350)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCccCccHHHHHHHHHHhcCCeEEEEc
Confidence 542 333455566777788776654
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0014 Score=57.60 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=46.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH--hCCCccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI--SLGAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~--~~g~~~~~~~~~~~~~aDivv~~~p 136 (290)
+|+|.|.|. |.||+.+++.|...|++|++.+|++.. .... ...+.-..++.++++++|+|+.+..
T Consensus 19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~ 86 (347)
T 4id9_A 19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-TGGEEVVGSLEDGQALSDAIMGVSAVLHLGA 86 (347)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-SCCSEEESCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-CCccEEecCcCCHHHHHHHHhCCCEEEECCc
Confidence 789999996 999999999999999999999998754 1100 0112222345677889999987654
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0059 Score=55.85 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=48.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccch--hhHHhCCCccC--CCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC--DPLISLGAKYQ--PSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~--~~~~~~g~~~~--~~~~~~~~~aDivv~~~ 135 (290)
+++|.|||.|..|.+.|+.|...|++|.++|.+.... ..++ .|+.+. ....+.++.+|.||+..
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~ 72 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASP 72 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECT
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCC
Confidence 6899999999999999999999999999999865432 2344 465542 21345667899988863
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0057 Score=53.37 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=47.3
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchh------hHHh-CC-------CccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD------PLIS-LG-------AKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~------~~~~-~g-------~~~~~~~~~~~~~aDivv~~~ 135 (290)
+|+|.|.| +|.||+.+++.|...|++|.+..|++++.. .+.. .+ +....+++++++++|+||-+.
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 88 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA 88 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence 68999999 699999999999999999998888765321 1111 11 222245677888899988654
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0061 Score=55.42 Aligned_cols=106 Identities=13% Similarity=0.156 Sum_probs=67.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCC----------ccchhhHHh-CC-------CccCCCHHHHhh-cCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLIS-LG-------AKYQPSPDEVAA-SCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~----------~~~~~~~~~-~g-------~~~~~~~~~~~~-~aDi 130 (290)
+++|.|.|+|++|+..++.|...|.+|+ +.|++ .+.+.++++ .+ .... +.++++. +||+
T Consensus 235 g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i-~~~ei~~~~~DI 313 (440)
T 3aog_A 235 GARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWGLPVEF 313 (440)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEEC-CHHHHTTCCCSE
T ss_pred CCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEc-CchhhhcCCCcE
Confidence 7999999999999999999999999887 56652 223333332 21 1222 4556654 6999
Q ss_pred EEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
++-|...+. + +.+..+.+ .-.+|+-.+.+.. + .+-.+.|.++|+.++
T Consensus 314 lvPcA~~n~-----i--~~~na~~l-~ak~VvEgAN~p~-t-~eA~~iL~~~GI~~~ 360 (440)
T 3aog_A 314 LVPAALEKQ-----I--TEQNAWRI-RARIVAEGANGPT-T-PAADDILLEKGVLVV 360 (440)
T ss_dssp EEECSSSSC-----B--CTTTGGGC-CCSEEECCSSSCB-C-HHHHHHHHHHTCEEE
T ss_pred EEecCCcCc-----c--chhhHHHc-CCcEEEecCcccc-C-HHHHHHHHHCCCEEE
Confidence 998765432 2 23334445 3455665555553 3 345577888888775
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0027 Score=56.73 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=48.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-------cCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivv~~~p 136 (290)
+|+|.|.|. |.||+.+++.|...|++|++.+|++.+.......++. ...+++++++.+|+||.+..
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 102 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA 102 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence 589999996 9999999999999999999999987553322222221 11235567788999887654
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0012 Score=57.22 Aligned_cols=113 Identities=8% Similarity=-0.037 Sum_probs=71.5
Q ss_pred CCCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChh---------
Q 022909 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE--------- 139 (290)
Q Consensus 69 ~~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~--------- 139 (290)
+++|+|.|+|.........+.|.+.|++|.+.....+. ..+.|....+++.+.++++|+|+...|...
T Consensus 5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~---~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~ 81 (300)
T 2rir_A 5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLD---HGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVF 81 (300)
T ss_dssp CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSS---CCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSS
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc---cccccceeccchHHHHhcCCEEEeccccccCCccccccc
Confidence 33789999999999999999999999999877432211 112244445566777889999986332210
Q ss_pred -HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCcc
Q 022909 140 -SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 191 (290)
Q Consensus 140 -~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~ 191 (290)
.....+ +++.++.+++..+++ ++ . +..++.+++.++++.+...|-
T Consensus 82 a~~~~~~--~~~~l~~~~~l~~i~-~g-~---~~~d~~~~~~~~gi~v~~~~~ 127 (300)
T 2rir_A 82 SNEEVVL--KQDHLDRTPAHCVIF-SG-I---SNAYLENIAAQAKRKLVKLFE 127 (300)
T ss_dssp CSSCEEC--CHHHHHTSCTTCEEE-ES-S---CCHHHHHHHHHTTCCEEEGGG
T ss_pred ccCCccc--hHHHHhhcCCCCEEE-Ee-c---CCHHHHHHHHHCCCEEEeecC
Confidence 001001 233456677777776 22 2 334555777788888877653
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0026 Score=54.48 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=34.2
Q ss_pred CCCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 70 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 70 ~~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
+++++.|.| .|.||+++++.|+..|++|.+.+|++++.+..
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~ 64 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAA 64 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 378899998 48999999999999999999999987765543
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0076 Score=50.59 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=35.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||+++++.|.+.|++|.+.+|++++.+..
T Consensus 12 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 52 (252)
T 3f1l_A 12 DRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQV 52 (252)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 788889985 8999999999999999999999998765544
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0043 Score=55.54 Aligned_cols=63 Identities=24% Similarity=0.261 Sum_probs=44.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchh-hHHhCCC-ccCCC---HHHHhhcCCeEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGA-KYQPS---PDEVAASCDVTFA 133 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~-~~~~~g~-~~~~~---~~~~~~~aDivv~ 133 (290)
+++|+|+|.|.+|+.+++.+++.|++|+++|++++... ...+.-+ ....+ +.++++++|+|+.
T Consensus 12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~ 79 (377)
T 3orq_A 12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY 79 (377)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence 68999999999999999999999999999998765321 1111100 01122 4556678998754
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0014 Score=56.34 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=42.3
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEe
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~ 135 (290)
|||.|.|. |.||+.+++.|.+.|++|++..|++.+.. +.......+.++++|.|+-+.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~------~~~~~~~~~~l~~~d~vihla 59 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGR------ITWDELAASGLPSCDAAVNLA 59 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTE------EEHHHHHHHCCCSCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCe------eecchhhHhhccCCCEEEEec
Confidence 68999996 99999999999999999999999875421 111011223456788887543
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0038 Score=55.00 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=47.3
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCC--e-----EEEEeCCcc--chh----hHHhCC------CccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGC--D-----VTVWNRTKS--KCD----PLISLG------AKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~--~-----V~~~d~~~~--~~~----~~~~~g------~~~~~~~~~~~~~aDi 130 (290)
.+||.|+| +|.||..++..|...|. + +.++|+++. +.+ ++.+.. +...++..+.+++||+
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDv 82 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCE
Confidence 58999999 79999999999988775 5 999999742 221 122211 2233567788999999
Q ss_pred EEEEe
Q 022909 131 TFAML 135 (290)
Q Consensus 131 vv~~~ 135 (290)
|+++.
T Consensus 83 VvitA 87 (333)
T 5mdh_A 83 AILVG 87 (333)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99875
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.01 Score=50.34 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=34.3
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
+++|.|.| .|.||+.+++.|...|++|++.+|++++.+.
T Consensus 31 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~ 70 (272)
T 1yb1_A 31 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEE 70 (272)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHH
Confidence 68899998 5999999999999999999999998765443
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0036 Score=55.88 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=44.7
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCC-----eEEEEeCCccch----h----hHHhC------CCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGC-----DVTVWNRTKSKC----D----PLISL------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~-----~V~~~d~~~~~~----~----~~~~~------g~~~~~~~~~~~~~aDi 130 (290)
..||+|+| .|.+|.+++-.+...+. ++.+++.+.+.. + ++... .+...++..+.+++||+
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDv 111 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 111 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCE
Confidence 68999999 79999999999988664 277765543321 1 11111 11234466778999999
Q ss_pred EEEEeC
Q 022909 131 TFAMLA 136 (290)
Q Consensus 131 vv~~~p 136 (290)
||++.-
T Consensus 112 VVitag 117 (375)
T 7mdh_A 112 ALLIGA 117 (375)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999753
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.014 Score=51.84 Aligned_cols=89 Identities=11% Similarity=0.023 Sum_probs=61.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhCCCcc----C--CCHHHH---h------hcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAKY----Q--PSPDEV---A------ASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~----~--~~~~~~---~------~~aDivv~~ 134 (290)
+.+|.|+|+|.+|...++.++..|.+ |++.++++++.+.+++.+-.. . .+.+++ + ...|+|+-+
T Consensus 180 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~ 259 (363)
T 3m6i_A 180 GDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALEC 259 (363)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEEC
Confidence 78999999999999999999999997 999999988877665541111 0 111222 1 147888888
Q ss_pred eCChhHHHHHhcccccccccCCCCCEEEEecC
Q 022909 135 LADPESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 135 ~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+..+...... ++.++++..++.++.
T Consensus 260 ~g~~~~~~~~-------~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 260 TGVESSIAAA-------IWAVKFGGKVFVIGV 284 (363)
T ss_dssp SCCHHHHHHH-------HHHSCTTCEEEECCC
T ss_pred CCChHHHHHH-------HHHhcCCCEEEEEcc
Confidence 8654333332 456778777777753
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0033 Score=55.20 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=47.7
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh----HHh-------CCCc-------cCCCHHHHhhcCCeE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP----LIS-------LGAK-------YQPSPDEVAASCDVT 131 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~----~~~-------~g~~-------~~~~~~~~~~~aDiv 131 (290)
+|+|.|.| .|.||+.+++.|...|++|++.+|++..... +.. .++. -.++++++++++|+|
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 104 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHV 104 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCEE
Confidence 68999999 5999999999999999999999997653221 111 1111 112356677789999
Q ss_pred EEEeC
Q 022909 132 FAMLA 136 (290)
Q Consensus 132 v~~~p 136 (290)
|-+..
T Consensus 105 ih~A~ 109 (351)
T 3ruf_A 105 LHQAA 109 (351)
T ss_dssp EECCC
T ss_pred EECCc
Confidence 87764
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0018 Score=61.18 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=31.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|||+|.+|..+++.|+..|. +++++|.+.
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~ 360 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT 360 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 6899999999999999999999997 799999864
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.022 Score=51.57 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeC----------CccchhhHHh-CC-Cc--cCCCHHHHhh-cCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNR----------TKSKCDPLIS-LG-AK--YQPSPDEVAA-SCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~----------~~~~~~~~~~-~g-~~--~~~~~~~~~~-~aDivv~~ 134 (290)
+++|.|.|+|++|+..++.|...|.+|. +.|+ +.+...++++ .+ +. .. +.++++. +||+++-|
T Consensus 218 gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~-~~~e~~~~~~DVliP~ 296 (419)
T 3aoe_E 218 GARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDL-APEEVFGLEAEVLVLA 296 (419)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCB-CTTTGGGSSCSEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeec-cchhhhccCceEEEec
Confidence 7999999999999999999999999987 7777 3343433333 22 11 11 2234433 79999887
Q ss_pred eCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 135 ~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
...+.-+.. ..+.++ =.+|+.-++... + .+-.+.|.++|+.++.
T Consensus 297 A~~n~i~~~-------~A~~l~-ak~V~EgAN~p~-t-~~A~~~L~~~Gi~~~P 340 (419)
T 3aoe_E 297 AREGALDGD-------RARQVQ-AQAVVEVANFGL-N-PEAEAYLLGKGALVVP 340 (419)
T ss_dssp SCTTCBCHH-------HHTTCC-CSEEEECSTTCB-C-HHHHHHHHHHTCEEEC
T ss_pred ccccccccc-------hHhhCC-ceEEEECCCCcC-C-HHHHHHHHHCCCEEEC
Confidence 644332222 233342 346677666654 3 4455778888888763
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0097 Score=53.82 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=67.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCCeEE-EEeC----------CccchhhHHhC-C-------CccCCCHHHHhh-cCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGCDVT-VWNR----------TKSKCDPLISL-G-------AKYQPSPDEVAA-SCD 129 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~~V~-~~d~----------~~~~~~~~~~~-g-------~~~~~~~~~~~~-~aD 129 (290)
+++|.|.|+|++|+..++.|.. .|.+|+ +.|. +++...++++. + .... +.++++. +||
T Consensus 209 g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil~~~~D 287 (415)
T 2tmg_A 209 KATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVD 287 (415)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHTTCSCS
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-CchhhhcCCCc
Confidence 7999999999999999999998 999887 5565 33333333331 1 1222 4456654 799
Q ss_pred eEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 130 ivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+++-|...+.-+..- .+.+ .-.+|+--+.+.. + .+-.+.|.++|+.++.
T Consensus 288 IliP~A~~n~i~~~~-------a~~l-~ak~V~EgAN~p~-t-~~a~~~l~~~Gi~~~P 336 (415)
T 2tmg_A 288 ILVPAALEGAIHAGN-------AERI-KAKAVVEGANGPT-T-PEADEILSRRGILVVP 336 (415)
T ss_dssp EEEECSSTTSBCHHH-------HTTC-CCSEEECCSSSCB-C-HHHHHHHHHTTCEEEC
T ss_pred EEEecCCcCccCccc-------HHHc-CCeEEEeCCCccc-C-HHHHHHHHHCCCEEEC
Confidence 999887654433322 2333 3445555555443 3 3455678888887653
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0052 Score=53.16 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=35.5
Q ss_pred CCCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 70 ~~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
.++++.|.|. |.||+++++.|...|++|++.+|++++.+..
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~ 71 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQA 71 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 3688999985 8999999999999999999999998765544
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.002 Score=57.60 Aligned_cols=88 Identities=10% Similarity=0.179 Sum_probs=50.4
Q ss_pred CeEEEEc-ccHhHHHHHH-HHHHCCC---eEEEEeCC-ccc-hhhHHhCCCcc--CCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 72 GRIGFLG-MGIMGTPMAQ-NLLKAGC---DVTVWNRT-KSK-CDPLISLGAKY--QPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~-~l~~~g~---~V~~~d~~-~~~-~~~~~~~g~~~--~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
+||+|+| +|.+|+.+.+ .|...++ .+.....+ ..+ ...+....+.. ..+.++ ++++|+|+.|+|... ..
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g~~~-s~ 79 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQGGDY-TN 79 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSCHHH-HH
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCCchh-HH
Confidence 6899999 9999999999 5665543 44444332 111 11111112222 223444 578999999997533 33
Q ss_pred HHhcccccccccCCCCC--EEEEecCC
Q 022909 143 DVACGKHGAASGMGPGK--GYVDVSTV 167 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~--~lin~s~~ 167 (290)
... + ...+.|. ++||.|+.
T Consensus 80 ~~a---~---~~~~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 80 EIY---P---KLRESGWQGYWIDAASS 100 (367)
T ss_dssp HHH---H---HHHHTTCCCEEEECSST
T ss_pred HHH---H---HHHHCCCCEEEEcCChh
Confidence 333 1 1223454 88988754
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0016 Score=54.65 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=31.6
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccch
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKC 107 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~ 107 (290)
++|.|.| .|.||+++++.|.+.|++|++.+|++++.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~ 38 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV 38 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence 5688888 59999999999999999999999987653
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0053 Score=53.89 Aligned_cols=88 Identities=19% Similarity=0.141 Sum_probs=61.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH-HhCCCccC-----CCHHHHhh-----cCCeEEEEeCCh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQ-----PSPDEVAA-----SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~-----~~~~~~~~-----~aDivv~~~p~~ 138 (290)
+++|.|+|+ |.||...++.++..|.+|++.++++++.+.+ ++.|.... .+..+.+. ..|+|+.++..
T Consensus 150 g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~- 228 (336)
T 4b7c_A 150 GETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG- 228 (336)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc-
Confidence 689999998 9999999999999999999999998887777 55554321 12222222 36777776642
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.... ..++.++++..++.++.
T Consensus 229 ~~~~-------~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 229 EILD-------TVLTRIAFKARIVLCGA 249 (336)
T ss_dssp HHHH-------HHHTTEEEEEEEEECCC
T ss_pred chHH-------HHHHHHhhCCEEEEEee
Confidence 2222 23456677777776654
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0037 Score=59.02 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=50.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh--CC-CccCCCHHHH-hhcCCeEEEEeCChhH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LG-AKYQPSPDEV-AASCDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~--~g-~~~~~~~~~~-~~~aDivv~~~p~~~~ 140 (290)
++|.|+|+|++|+.+|+.|...|++|.+.|.++++.+++.. .| ..-...++++ ++++|.++++++.+..
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~~ 421 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDST 421 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCchH
Confidence 78999999999999999999999999999999987665431 00 1111112222 4679999999877543
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0053 Score=51.74 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=35.8
Q ss_pred CCCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 70 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 70 ~~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
|.|+|.|-| .+.||+++|+.|++.|.+|.+.|+++++.+++.+
T Consensus 1 MnK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~ 44 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK 44 (247)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 468888887 5889999999999999999999999876655544
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0033 Score=55.95 Aligned_cols=88 Identities=18% Similarity=0.117 Sum_probs=60.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-----CCHHHHhh-----cCCeEEEEeCChh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA-----SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~-----~aDivv~~~p~~~ 139 (290)
+.+|.|+| .|.+|...++.++..|.+|++.++++++.+.+++.|.... .++.+.+. ..|+|+.++.. .
T Consensus 164 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-~ 242 (362)
T 2c0c_A 164 GKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG-A 242 (362)
T ss_dssp TCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-H
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-H
Confidence 68999999 7999999999999999999999999887777766654321 12333332 35777777653 2
Q ss_pred HHHHHhcccccccccCCCCCEEEEecC
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.... .++.++++..++.++.
T Consensus 243 ~~~~-------~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 243 MFDL-------AVDALATKGRLIVIGF 262 (362)
T ss_dssp HHHH-------HHHHEEEEEEEEECCC
T ss_pred HHHH-------HHHHHhcCCEEEEEeC
Confidence 2222 2445566666666643
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0025 Score=55.71 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=45.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh--CCC-------ccCCCHHHHhh--cCCeEEEEeC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGA-------KYQPSPDEVAA--SCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~--~g~-------~~~~~~~~~~~--~aDivv~~~p 136 (290)
+|+|.|.|. |.||+.+++.|...|++|++.+|++.......+ .++ .-..+++++++ ..|+||.+..
T Consensus 20 ~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~ 97 (330)
T 2pzm_A 20 HMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAA 97 (330)
T ss_dssp CCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 789999996 999999999999999999999997543221101 011 11113455666 7888877654
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0066 Score=55.05 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=60.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCCc---------------cchhhHHh-CC-------CccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTK---------------SKCDPLIS-LG-------AKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~~---------------~~~~~~~~-~g-------~~~~~~~~~~~~ 126 (290)
+++|.|.|+|++|+..++.|...|.+|+ +.|.++ +.+.++++ .+ .... +.++++.
T Consensus 212 g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~~~~ 290 (421)
T 2yfq_A 212 DAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEEFWT 290 (421)
T ss_dssp GSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC------------------
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-Cccchhc
Confidence 7899999999999999999999999987 667762 22222222 11 1222 2234433
Q ss_pred -cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 127 -SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 127 -~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
+|||++-|.+.+.-+..- ...+ ...+|+-.+.++. + .+-.+.|.++|+.++
T Consensus 291 ~~~DIliP~A~~n~i~~~~-------A~~l-~ak~VvEgAN~P~-t-~ea~~il~~~GI~~~ 342 (421)
T 2yfq_A 291 KEYDIIVPAALENVITGER-------AKTI-NAKLVCEAANGPT-T-PEGDKVLTERGINLT 342 (421)
T ss_dssp ----CEEECSCSSCSCHHH-------HTTC-CCSEEECCSSSCS-C-HHHHHHHHHHTCEEE
T ss_pred CCccEEEEcCCcCcCCccc-------HHHc-CCeEEEeCCcccc-C-HHHHHHHHHCCCEEE
Confidence 699998876544333322 2334 4456666555554 3 345567778888765
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0062 Score=55.14 Aligned_cols=107 Identities=19% Similarity=0.177 Sum_probs=65.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCC----------ccchhhHHhC-CC------------ccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLISL-GA------------KYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~----------~~~~~~~~~~-g~------------~~~~~~~~~~~ 126 (290)
+++|.|.|+|++|+..++.|...|.+|+ +.|.+ .+.+.++++. +. ....+.++++.
T Consensus 210 gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~~~ 289 (421)
T 1v9l_A 210 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFK 289 (421)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGG
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhhhc
Confidence 7999999999999999999999999887 55652 2222222211 11 12213345554
Q ss_pred -cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 127 -SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 127 -~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
+||+++-|-- ...+ +.+..+.++ =.+|+--++... + .+-.+.|.++|+.++
T Consensus 290 ~~~Dil~P~A~-----~~~I--~~~~a~~l~-ak~V~EgAN~p~-t-~~a~~~l~~~Gi~~~ 341 (421)
T 1v9l_A 290 LDVDIFVPAAI-----ENVI--RGDNAGLVK-ARLVVEGANGPT-T-PEAERILYERGVVVV 341 (421)
T ss_dssp CCCSEEEECSC-----SSCB--CTTTTTTCC-CSEEECCSSSCB-C-HHHHHHHHTTTCEEE
T ss_pred CCccEEEecCc-----CCcc--chhhHHHcC-ceEEEecCCCcC-C-HHHHHHHHHCCCEEe
Confidence 6999886652 2333 333445553 245555555443 3 345577888888776
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0031 Score=55.59 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=58.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH-hCCCccC------CCHHHHhh-----cCCeEEEEeCC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-SLGAKYQ------PSPDEVAA-----SCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~-~~g~~~~------~~~~~~~~-----~aDivv~~~p~ 137 (290)
+++|.|+|+ |.+|..+++.++..|.+|++.++++++.+.++ +.|.... .++.+.+. ..|+|+.++..
T Consensus 156 g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 235 (345)
T 2j3h_A 156 GETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGG 235 (345)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSCH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCCH
Confidence 689999997 99999999999999999999999988777666 4554211 12333332 36777766632
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEec
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
..... .++.++++..++.++
T Consensus 236 -~~~~~-------~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 236 -KMLDA-------VLVNMNMHGRIAVCG 255 (345)
T ss_dssp -HHHHH-------HHTTEEEEEEEEECC
T ss_pred -HHHHH-------HHHHHhcCCEEEEEc
Confidence 22222 245556666666654
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.021 Score=50.94 Aligned_cols=90 Identities=21% Similarity=0.151 Sum_probs=64.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-----CCHHHHhh---cCCeEEEEeCChhHH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA---SCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~---~aDivv~~~p~~~~~ 141 (290)
+.+|.|+| .|.+|...++.++..|.+|++.+ ++++.+.+++.|...+ .+..+.+. ..|+|+.++.....+
T Consensus 184 g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~ 262 (375)
T 2vn8_A 184 GKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTET 262 (375)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhhh
Confidence 68999999 79999999999999999999888 5566666666665321 23333332 489999988654221
Q ss_pred HHHhcccccccccCCCCCEEEEecCC
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
+ ...++.++++..++.++..
T Consensus 263 ---~---~~~~~~l~~~G~iv~~g~~ 282 (375)
T 2vn8_A 263 ---W---APDFLKKWSGATYVTLVTP 282 (375)
T ss_dssp ---H---GGGGBCSSSCCEEEESCCS
T ss_pred ---h---HHHHHhhcCCcEEEEeCCC
Confidence 1 2336778888888888653
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00091 Score=59.20 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=51.8
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCC---eEEEEe-CCc-cchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGC---DVTVWN-RTK-SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~---~V~~~d-~~~-~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
++|+||| .|..|+.+.+.|..+.+ ++.... ++. .+.-.+........+..++.++++|+|+.|+|.. ..+...
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~-~s~~~a 80 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSA-MSKVQA 80 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSCHH-HHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCChH-HHHHHH
Confidence 6899999 79999999999998754 344443 221 1110111100111101123357899999999853 333333
Q ss_pred cccccccccCCCCCEEEEecCC
Q 022909 146 CGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~ 167 (290)
-...+.|..+||.|..
T Consensus 81 ------~~~~~~G~~vID~Sa~ 96 (344)
T 3tz6_A 81 ------PRFAAAGVTVIDNSSA 96 (344)
T ss_dssp ------HHHHHTTCEEEECSST
T ss_pred ------HHHHhCCCEEEECCCc
Confidence 1224568899999763
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0095 Score=49.63 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=34.7
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.| .|.||+++++.|.+.|++|++.+|++++.+.+
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~ 45 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKF 45 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68888888 59999999999999999999999988765543
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0045 Score=54.34 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=39.8
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+| .|.+|...++.++..|.+|++.++++++.+.+++.|.
T Consensus 149 g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga 194 (334)
T 3qwb_A 149 GDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGA 194 (334)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 68999999 8999999999999999999999999888776666554
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0028 Score=53.93 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=47.8
Q ss_pred eEEEEcc-cHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHhCCCcc-------CCCHHHHhhcCCeEEEEeC
Q 022909 73 RIGFLGM-GIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 73 ~IgiiG~-G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivv~~~p 136 (290)
+|.|.|. |.||+.+++.|... |++|.+.+|++++.+.+...++.. .+++.++++++|+|+.+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4789995 99999999999988 999999999887665544433321 1235567788999987654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0042 Score=52.50 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=34.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.| .|.||+++++.|...|++|++.+|++++.+..
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~ 69 (262)
T 3rkr_A 29 GQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAV 69 (262)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 68888888 59999999999999999999999998765544
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.003 Score=54.39 Aligned_cols=66 Identities=23% Similarity=0.185 Sum_probs=46.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHhC-----CCccCCCHHHHhh--cCCeEEEEeC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAA--SCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~--~aDivv~~~p 136 (290)
+|+|.|.|. |.||+.+++.|... |++|++.+|++.+....... .+....+++++++ ..|+||.+..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~ 77 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAA 77 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCC
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCc
Confidence 588999996 99999999999988 89999999987653211111 1111123455666 7899887754
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0028 Score=55.91 Aligned_cols=87 Identities=17% Similarity=0.144 Sum_probs=57.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC----CCHHHHhh------cCCeEEEEeCChh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPDEVAA------SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~~~------~aDivv~~~p~~~ 139 (290)
+.+|.|+|+ |.+|...++.++..|.+|++.++++++.+.+++.|...+ .+..+.+. ..|+|+.++.. +
T Consensus 160 g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~-~ 238 (342)
T 4eye_A 160 GETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGG-P 238 (342)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC---
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCch-h
Confidence 689999998 999999999999999999999999888777666554321 22222221 35677666543 2
Q ss_pred HHHHHhcccccccccCCCCCEEEEec
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
.... .++.++++..++.++
T Consensus 239 ~~~~-------~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 239 AFDD-------AVRTLASEGRLLVVG 257 (342)
T ss_dssp CHHH-------HHHTEEEEEEEEEC-
T ss_pred HHHH-------HHHhhcCCCEEEEEE
Confidence 2222 234556666666554
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0035 Score=55.66 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=58.9
Q ss_pred CeEEEEcccHhHHHH-HHHH-HHCCCe-EEEEeCCcc---chhhHHhCCCccC----CCHHHHhh----cCCeEEEEeCC
Q 022909 72 GRIGFLGMGIMGTPM-AQNL-LKAGCD-VTVWNRTKS---KCDPLISLGAKYQ----PSPDEVAA----SCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~l-a~~l-~~~g~~-V~~~d~~~~---~~~~~~~~g~~~~----~~~~~~~~----~aDivv~~~p~ 137 (290)
.+|.|+|+|.+|... ++.+ +..|.+ |++.+++++ +.+.+++.|...+ .+..+ +. ..|+|+-++..
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~gg~Dvvid~~g~ 252 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVED-VPDVYEQMDFIYEATGF 252 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSCCEEEEEECSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHH-HHHhCCCCCEEEECCCC
Confidence 899999999999999 9998 888997 999999988 7777777776432 12222 22 36777777654
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEec
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
+...... ++.++++..++.++
T Consensus 253 ~~~~~~~-------~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 253 PKHAIQS-------VQALAPNGVGALLG 273 (357)
T ss_dssp HHHHHHH-------HHHEEEEEEEEECC
T ss_pred hHHHHHH-------HHHHhcCCEEEEEe
Confidence 3333322 34455666666654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.012 Score=48.93 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=34.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||+++++.|...|++|.+.+|++++.+..
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~ 43 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQ 43 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 578889984 8999999999999999999999998765544
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0033 Score=55.51 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=39.9
Q ss_pred CCeEEEE-cccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFL-GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~Igii-G~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+ |.|.+|...++.++..|.+|++.++++++.+.+++.|.
T Consensus 151 g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa 196 (346)
T 3fbg_A 151 GKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGA 196 (346)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC
Confidence 7899999 69999999999999999999999999888777766554
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0043 Score=52.46 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=35.1
Q ss_pred CCeEEEEcc-c-HhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-G-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G-~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. | .||+++++.|...|++|++.+|+.++.+..
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 63 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGET 63 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHH
Confidence 789999998 8 599999999999999999999997765543
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0087 Score=50.50 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=35.4
Q ss_pred CCeEEEEccc---HhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG~G---~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
+|++.|-|.+ -||+++|+.|++.|.+|.+.+|+++..+++.
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~ 49 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELE 49 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 7899999974 5999999999999999999999987665543
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0098 Score=50.74 Aligned_cols=41 Identities=22% Similarity=0.196 Sum_probs=35.7
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
++++.|.| .|.||+++++.|++.|++|.+.+|++++.+.+.
T Consensus 32 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 73 (276)
T 3r1i_A 32 GKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVA 73 (276)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 68899998 599999999999999999999999987665543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0084 Score=50.15 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=35.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||+++++.|.+.|++|++.+|++++.+.+
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 49 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAV 49 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 688889985 9999999999999999999999988765544
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0043 Score=54.28 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=60.7
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-----CCHHHHhh------cCCeEEEEeCCh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA------SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~------~aDivv~~~p~~ 138 (290)
+.+|.|+| .|.+|...++.++..|.+|++.++++++.+.+++.|...+ .+..+.+. ..|+|+.++..
T Consensus 141 g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~- 219 (325)
T 3jyn_A 141 GEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ- 219 (325)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG-
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh-
Confidence 68999999 7999999999999999999999999888777766554211 12222221 36777777643
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
..... .++.++++..++.++.
T Consensus 220 ~~~~~-------~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 220 DTWLT-------SLDSVAPRGLVVSFGN 240 (325)
T ss_dssp GGHHH-------HHTTEEEEEEEEECCC
T ss_pred HHHHH-------HHHHhcCCCEEEEEec
Confidence 32222 2456677777777653
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0047 Score=54.01 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=38.2
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG 114 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g 114 (290)
+++|.|+| .|.||..+++.++..|.+|++.++++++.+.+++.|
T Consensus 141 g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g 185 (327)
T 1qor_A 141 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAG 185 (327)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC
Confidence 68999999 799999999999999999999999987766665544
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0046 Score=52.32 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=34.8
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.| .|.||+++++.|.+.|++|.+.+|++++.+..
T Consensus 10 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 50 (262)
T 3pk0_A 10 GRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDAC 50 (262)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68888888 59999999999999999999999998765543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.011 Score=53.94 Aligned_cols=88 Identities=16% Similarity=0.069 Sum_probs=63.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCH------------------------HHH-
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSP------------------------DEV- 124 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~------------------------~~~- 124 (290)
+.+|.|+|+ |.||...++.++..|.+|++.++++++.+.+++.|...+-+. +++
T Consensus 221 g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 300 (447)
T 4a0s_A 221 GDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVV 300 (447)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHHH
Confidence 689999998 999999999999999999999999888877777765422111 111
Q ss_pred --h-hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecC
Q 022909 125 --A-ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 125 --~-~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
. ...|+|+.++.. .... ..+..++++..+++++.
T Consensus 301 ~~~g~g~Dvvid~~G~-~~~~-------~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 301 EKAGREPDIVFEHTGR-VTFG-------LSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHSSCCSEEEECSCH-HHHH-------HHHHHSCTTCEEEESCC
T ss_pred HHhCCCceEEEECCCc-hHHH-------HHHHHHhcCCEEEEEec
Confidence 1 247999988753 3222 23566788888888764
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0069 Score=51.24 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||+++++.|.+.|++|.+.+|++++.+..
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 51 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDV 51 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHH
Confidence 688889985 8899999999999999999999987765544
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.012 Score=53.52 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=43.9
Q ss_pred CCeEEEEcccHh-HHHHHHHHHH----C-CCeEEEEeCCccchhhHHh-------C--CCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIM-GTPMAQNLLK----A-GCDVTVWNRTKSKCDPLIS-------L--GAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~i-G~~la~~l~~----~-g~~V~~~d~~~~~~~~~~~-------~--g~~~~~~~~~~~~~aDivv~~~ 135 (290)
.+||+|||.|.+ +..+...|.. . +.+|.++|.++++.+.... . .+..+.+..+.+++||+|+++.
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Viita 81 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQF 81 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEEcC
Confidence 589999999985 2222223333 2 5689999999876443211 1 1233467778899999999998
Q ss_pred C
Q 022909 136 A 136 (290)
Q Consensus 136 p 136 (290)
-
T Consensus 82 g 82 (417)
T 1up7_A 82 R 82 (417)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.006 Score=53.68 Aligned_cols=88 Identities=16% Similarity=0.231 Sum_probs=60.1
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-----CCHHHHhh------cCCeEEEEeCCh
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA------SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~------~aDivv~~~p~~ 138 (290)
+.+|.|+|+| .+|...++.++..|.+|++.++++++.+.+++.|...+ .+..+.+. ..|+|+.++..
T Consensus 145 g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~- 223 (340)
T 3gms_A 145 NDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG- 223 (340)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH-
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC-
Confidence 6899999987 99999999999999999999999988877776554321 12222221 36777776643
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
..+... ++.++++..++.++.
T Consensus 224 ~~~~~~-------~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 224 PDGNEL-------AFSLRPNGHFLTIGL 244 (340)
T ss_dssp HHHHHH-------HHTEEEEEEEEECCC
T ss_pred hhHHHH-------HHHhcCCCEEEEEee
Confidence 333222 245666667776653
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.01 Score=50.50 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=33.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|.| .|.||+++++.|...|++|.+.+|++++.+.
T Consensus 22 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~ 61 (277)
T 2rhc_B 22 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRT 61 (277)
T ss_dssp SCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 67888888 5999999999999999999999998765443
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0038 Score=58.31 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=48.3
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p 136 (290)
+|+|.|.| +|.||+.+++.|...|++|++.+|++.+.+... ....+...++++++|+||.+..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~---~d~~~~~~~~l~~~D~Vih~A~ 210 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRF---WDPLNPASDLLDGADVLVHLAG 210 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEE---CCTTSCCTTTTTTCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcccee---ecccchhHHhcCCCCEEEECCC
Confidence 58999999 699999999999999999999999876543211 1112345567788999987654
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0099 Score=50.25 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=34.2
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|.| .|.||+++++.|.+.|++|.+.+|++++.+.
T Consensus 13 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~ 52 (267)
T 1iy8_A 13 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEA 52 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 68888888 5999999999999999999999998765544
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0035 Score=50.52 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=41.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhc---CCeEEEEe
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivv~~~ 135 (290)
+|+|.|.| .|.||+.+++.|. .|++|++.+|+++.. ...+...+++++++++ .|+||.+.
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~----~~D~~~~~~~~~~~~~~~~~d~vi~~a 66 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDV----TVDITNIDSIKKMYEQVGKVDAIVSAT 66 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSE----ECCTTCHHHHHHHHHHHCCEEEEEECC
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccce----eeecCCHHHHHHHHHHhCCCCEEEECC
Confidence 35899998 5999999999999 999999999986411 1112111234445544 68887764
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0036 Score=55.32 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=61.6
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHC-CCeEEEEeCCccchhhHHhCCCccC-----CC----HHHHh--hcCCeEEEEeCC
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQ-----PS----PDEVA--ASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~~-----~~----~~~~~--~~aDivv~~~p~ 137 (290)
+++|.|+|.| .+|..+++.++.. |.+|++.++++++.+.+++.|.... .+ ..++. ...|+|+.++..
T Consensus 171 g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 250 (347)
T 1jvb_A 171 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNS 250 (347)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCC
T ss_pred CCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECCCC
Confidence 6899999998 9999999999998 9999999999887776665554211 12 12222 246888877754
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEecC
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+... +..++.++++..++.++.
T Consensus 251 ~~~~-------~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 251 EKTL-------SVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp HHHH-------TTGGGGEEEEEEEEECCS
T ss_pred HHHH-------HHHHHHHhcCCEEEEECC
Confidence 3222 233566777777777653
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0074 Score=50.71 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=33.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|.| .|.||+++++.|...|++|.+.+|++++.+.
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~ 41 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKA 41 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 57888998 5999999999999999999999998765544
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0099 Score=51.85 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=47.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHH---h------------CCCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI---S------------LGAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~---~------------~g~~~~~~~~~~~~~aDivv~~ 134 (290)
+++|.|.| +|.||+.+++.|...|++|.+..|+++...... + ..+....+++++++++|+|+-+
T Consensus 5 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~ 84 (337)
T 2c29_D 5 SETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHV 84 (337)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEEC
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEEe
Confidence 68899999 799999999999999999999888865322111 0 1122234567788889988764
Q ss_pred e
Q 022909 135 L 135 (290)
Q Consensus 135 ~ 135 (290)
.
T Consensus 85 A 85 (337)
T 2c29_D 85 A 85 (337)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.01 Score=50.00 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=34.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.| .|.||+++++.|.+.|++|.+.+|+.++.++.
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 48 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQA 48 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68899998 59999999999999999999999987765544
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.01 Score=53.73 Aligned_cols=107 Identities=16% Similarity=0.182 Sum_probs=68.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCC----------ccchhhHHh-CC------CccCCCHHHHhh-cCCeE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLIS-LG------AKYQPSPDEVAA-SCDVT 131 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~----------~~~~~~~~~-~g------~~~~~~~~~~~~-~aDiv 131 (290)
++||.|-|+|++|+..++.|...|.+|+ +.|.+ .+.+.++++ .| .... +.++++. +|||+
T Consensus 221 g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~-~~~~i~~~~~DIl 299 (424)
T 3k92_A 221 NARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVI-TNEELLEKDCDIL 299 (424)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCB-CHHHHHHSCCSEE
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEe-cCccceeccccEE
Confidence 7999999999999999999999999874 66765 222222222 12 2222 4456554 69999
Q ss_pred EEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 132 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+-|... +.+ +.+..+.+ .-.+|+-.+.++. + .+..+.|.++|+.|+.
T Consensus 300 iPcA~~-----n~I--~~~~a~~l-~ak~V~EgAN~p~-t-~eA~~iL~~rGI~~~P 346 (424)
T 3k92_A 300 VPAAIS-----NQI--TAKNAHNI-QASIVVERANGPT-T-IDATKILNERGVLLVP 346 (424)
T ss_dssp EECSCS-----SCB--CTTTGGGC-CCSEEECCSSSCB-C-HHHHHHHHHTTCEEEC
T ss_pred eecCcc-----ccc--ChhhHhhc-CceEEEcCCCCCC-C-HHHHHHHHHCCCEEEC
Confidence 866543 334 33444455 3455665555553 3 4556788888887763
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0068 Score=51.26 Aligned_cols=84 Identities=6% Similarity=0.009 Sum_probs=53.2
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEE--eCChhHHHHHhcc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~--~p~~~~~~~~~~~ 147 (290)
+|++.|-| .+.||+++|+.|++.|.+|.+++|++++.++..+ ++.+. ..+++.+. +...++++.++
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~-------~i~~~--g~~~~~~~~Dvt~~~~v~~~~-- 75 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQ-------ELRGM--GKEVLGVKADVSKKKDVEEFV-- 75 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHT--TCCEEEEECCTTSHHHHHHHH--
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH-------HHHhc--CCcEEEEEccCCCHHHHHHHH--
Confidence 78888887 4889999999999999999999999877655433 11111 12333322 33455666666
Q ss_pred cccccccCCCCCEEEEecC
Q 022909 148 KHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~ 166 (290)
++..+...+=.++||.+.
T Consensus 76 -~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 76 -RRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp -HHHHHHHSCCCEEEECCC
T ss_pred -HHHHHHcCCCCEEEECCc
Confidence 233343333346777653
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.007 Score=51.49 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=34.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.| .|.||+++++.|++.|++|++.+|++++.+..
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~ 68 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGI 68 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 67777777 58999999999999999999999987665543
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.015 Score=50.80 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=50.8
Q ss_pred CCeEEEEccc--HhHHHHHHHHHHCCCeEEEEeCCccch-----hhHH----hCC--CccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLI----SLG--AKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G--~iG~~la~~l~~~g~~V~~~d~~~~~~-----~~~~----~~g--~~~~~~~~~~~~~aDivv~~~ 135 (290)
+.+|+++|-| ++..+++..+..+|++|.+..+..-.. +.++ +.| +..+.+++++++++|+|..-+
T Consensus 167 gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~ 244 (325)
T 1vlv_A 167 GVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 244 (325)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred CcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEecc
Confidence 7999999985 999999999999999999998753211 1111 345 455789999999999998743
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0085 Score=50.34 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=35.7
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
++++.|.| .|.||+++++.|...|++|.+.+|++++.+...
T Consensus 7 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (252)
T 3h7a_A 7 NATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLV 48 (252)
T ss_dssp SCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 68888888 589999999999999999999999987766543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0037 Score=56.34 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=40.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK 116 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~ 116 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|..
T Consensus 186 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 232 (398)
T 2dph_A 186 GSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFE 232 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc
Confidence 6899999999999999999999998 899999998887777666653
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0044 Score=51.07 Aligned_cols=34 Identities=32% Similarity=0.573 Sum_probs=31.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
...|.|||+|.-|...|..|+..|++|+++++.+
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3569999999999999999999999999999865
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0079 Score=51.74 Aligned_cols=66 Identities=15% Similarity=-0.011 Sum_probs=53.9
Q ss_pred CCeEEEEcc---cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~---G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
+.+|+++|- +++..+++..+..+|++|.+..+..-..+.+.+.|+..+.+++++++++|+|.. +-.
T Consensus 146 gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~ 214 (291)
T 3d6n_B 146 DLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRL 214 (291)
T ss_dssp TCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCC
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCc
Confidence 799999997 899999999999999999999875322222334567778899999999999998 543
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.011 Score=51.27 Aligned_cols=65 Identities=22% Similarity=0.178 Sum_probs=50.9
Q ss_pred CCeEEEEccc--HhHHHHHHHHHHCCCeEEEEeCCccch-----hhHH----hCC--CccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLI----SLG--AKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G--~iG~~la~~l~~~g~~V~~~d~~~~~~-----~~~~----~~g--~~~~~~~~~~~~~aDivv~~~ 135 (290)
+.+|+++|-| ++..+++..+..+|++|.+..+..-.. +.++ +.| +..+.+++++++++|+|..-.
T Consensus 148 gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~ 225 (307)
T 2i6u_A 148 GLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDT 225 (307)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred CeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecc
Confidence 7899999985 999999999999999999998753211 1111 334 455789999999999998744
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0067 Score=52.07 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=36.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
++++.|.| .|.||+++++.|+..|++|++.+|++++.+...+
T Consensus 16 gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~ 58 (291)
T 3rd5_A 16 QRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAAR 58 (291)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 78899998 4999999999999999999999999877665543
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.018 Score=47.53 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=57.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEE-EEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
.|+.+|+|+ |+||+.+++.....|+++. .+|+... ++ ++++|++|=-. .|..+...+
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~-------------~~----l~~~DVvIDFT-~P~a~~~~~--- 70 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-------------EE----LDSPDVVIDFS-SPEALPKTV--- 70 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-------------EE----CSCCSEEEECS-CGGGHHHHH---
T ss_pred cceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc-------------cc----ccCCCEEEECC-CHHHHHHHH---
Confidence 589999997 9999999988777888755 5665431 11 13689877332 334444443
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
....+.+.-+|-.++|-.....+..+.+.++ +.++-+|++.
T Consensus 71 ---~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vv~apNfS 111 (228)
T 1vm6_A 71 ---DLCKKYRAGLVLGTTALKEEHLQMLRELSKE-VPVVQAYNFS 111 (228)
T ss_dssp ---HHHHHHTCEEEECCCSCCHHHHHHHHHHTTT-SEEEECSCCC
T ss_pred ---HHHHHcCCCEEEeCCCCCHHHHHHHHHHHhh-CCEEEecccc
Confidence 1223345555544454444333344444333 6677677664
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0036 Score=54.21 Aligned_cols=65 Identities=23% Similarity=0.233 Sum_probs=44.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH----HhCCCccCCCHHHHhhc--CCeEEEEeC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL----ISLGAKYQPSPDEVAAS--CDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~----~~~g~~~~~~~~~~~~~--aDivv~~~p 136 (290)
.++|.|.| .|.||+.+++.|...|++|++.+|++.. +.+ ....+....+++++++. .|+||.+..
T Consensus 12 ~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 83 (321)
T 2pk3_A 12 SMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAA 83 (321)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred cceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-ccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 58899998 5999999999999999999999998654 211 00111111234556665 899887754
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0094 Score=52.49 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=57.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEEEEeCCccchhhHHhCCCccC----CCHHHHh----h--cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQ----PSPDEVA----A--SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~~----~--~aDivv~~~p~~~ 139 (290)
+.+|.|+|+|.+|...++.++.. |.+|++.++++++.+.+++.|...+ ++..+.+ . ..|+|+-++..+.
T Consensus 172 g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~~ 251 (345)
T 3jv7_A 172 GSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQS 251 (345)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCHH
Confidence 68999999999999999999887 7899999999988887777665321 1121111 1 3567776665433
Q ss_pred HHHHHhcccccccccCCCCCEEEEec
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
..... ++.++++..++.++
T Consensus 252 ~~~~~-------~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 252 TIDTA-------QQVVAVDGHISVVG 270 (345)
T ss_dssp HHHHH-------HHHEEEEEEEEECS
T ss_pred HHHHH-------HHHHhcCCEEEEEC
Confidence 33222 33445555555553
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.01 Score=49.43 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=35.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||+++++.|...|++|.+.+|++++.+..
T Consensus 14 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 54 (247)
T 3i1j_A 14 GRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEV 54 (247)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHH
Confidence 688889985 9999999999999999999999998765544
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.022 Score=47.89 Aligned_cols=86 Identities=14% Similarity=0.021 Sum_probs=51.8
Q ss_pred CCeEEEEcc---cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~---G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
+++|.|.|. |.||+++++.|.+.|++|.+.+|+....+.+.+ +.+......++..=+....+++.++
T Consensus 14 ~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~--------~~~~~~~~~~~~~Dv~~~~~v~~~~-- 83 (271)
T 3ek2_A 14 GKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITE--------FAAEFGSELVFPCDVADDAQIDALF-- 83 (271)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------HHHHTTCCCEEECCTTCHHHHHHHH--
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHH--------HHHHcCCcEEEECCCCCHHHHHHHH--
Confidence 799999995 689999999999999999999998543333222 1111112233332233455566665
Q ss_pred cccccccCCCCCEEEEecCC
Q 022909 148 KHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~ 167 (290)
+++.+...+=.++||.+..
T Consensus 84 -~~~~~~~g~id~lv~nAg~ 102 (271)
T 3ek2_A 84 -ASLKTHWDSLDGLVHSIGF 102 (271)
T ss_dssp -HHHHHHCSCEEEEEECCCC
T ss_pred -HHHHHHcCCCCEEEECCcc
Confidence 2233333333466776643
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0077 Score=53.31 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=59.7
Q ss_pred CCeEEEE-cccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-----CCHHHHhh-----cCCeEEEEeCChh
Q 022909 71 PGRIGFL-GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA-----SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~Igii-G~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~-----~aDivv~~~p~~~ 139 (290)
+.+|.|+ |.|.+|...++.++..|.+|++.++++++.+.+++.|...+ .+..+.+. ..|+|+.++.. +
T Consensus 168 g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~-~ 246 (353)
T 4dup_A 168 GESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA-A 246 (353)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCG-G
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCH-H
Confidence 6899999 68999999999999999999999999988777766554321 12223222 36777777643 2
Q ss_pred HHHHHhcccccccccCCCCCEEEEec
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
.... .++.++++..++.++
T Consensus 247 ~~~~-------~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 247 YFER-------NIASLAKDGCLSIIA 265 (353)
T ss_dssp GHHH-------HHHTEEEEEEEEECC
T ss_pred HHHH-------HHHHhccCCEEEEEE
Confidence 2222 244566666666665
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0046 Score=52.10 Aligned_cols=41 Identities=29% Similarity=0.290 Sum_probs=35.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
++++.|.|. |.||+++++.|.+.|++|.+.+|++++.++..
T Consensus 6 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (257)
T 3imf_A 6 EKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAK 47 (257)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 688888884 89999999999999999999999987665543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.005 Score=54.29 Aligned_cols=44 Identities=14% Similarity=0.044 Sum_probs=38.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG 114 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g 114 (290)
+++|.|+|. |.+|..+++.++..|.+|++.++++++.+.+++.|
T Consensus 167 g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g 211 (343)
T 2eih_A 167 GDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALG 211 (343)
T ss_dssp TCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcC
Confidence 689999998 99999999999999999999999987766655444
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0061 Score=53.90 Aligned_cols=66 Identities=9% Similarity=0.128 Sum_probs=47.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCCccch--h----hHHhC------CCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSKC--D----PLISL------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~~~~~--~----~~~~~------g~~~~~~~~~~~~~aDi 130 (290)
..||.|+|+ |.||+.++-+|+.... ++.++|..+... + ++... .+...++..+.+++||+
T Consensus 24 ~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~adv 103 (345)
T 4h7p_A 24 AVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAI 103 (345)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCCE
Confidence 469999996 9999999999987433 789999875321 1 12221 12344678888999999
Q ss_pred EEEEeC
Q 022909 131 TFAMLA 136 (290)
Q Consensus 131 vv~~~p 136 (290)
||++--
T Consensus 104 Vvi~aG 109 (345)
T 4h7p_A 104 AIMCGA 109 (345)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 998753
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0074 Score=51.56 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=34.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.| .|.||+++++.|++.|++|++.+|++++.+..
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~ 69 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAA 69 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68888888 58999999999999999999999987665544
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0072 Score=55.62 Aligned_cols=67 Identities=22% Similarity=0.144 Sum_probs=46.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHh-CCCccC--CCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLIS-LGAKYQ--PSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~-~g~~~~--~~~~~~~~~aDivv~~~p~ 137 (290)
+++|.|||.|.+|..-++.|...|.+|+++++.... ...+.+ .++... .-.++.+.++|+|+.+...
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~ 82 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD 82 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCC
Confidence 799999999999999999999999999999986432 222222 223221 1112346788988877544
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0018 Score=54.87 Aligned_cols=65 Identities=14% Similarity=0.082 Sum_probs=46.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh----CCCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LGAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----~g~~~~~~~~~~~~~aDivv~~~ 135 (290)
+++|.|.| .|.||+.+++.|...|++|.+.+|++.+...... ..+.-.+++++++++.|+||.+.
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~A 72 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLG 72 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECC
Confidence 47899998 6999999999999999999999998765331000 11221224566778899988764
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.015 Score=49.23 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=34.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.| .|.||+++++.|.+.|++|.+.+|+.++.++.
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~ 67 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEI 67 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68888888 58999999999999999999999987665543
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0066 Score=53.16 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=45.4
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHC--CCeEEEEeCCccc--hhhHHh---CCCc-------cCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKA--GCDVTVWNRTKSK--CDPLIS---LGAK-------YQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~--g~~V~~~d~~~~~--~~~~~~---~g~~-------~~~~~~~~~~~aDivv~~~ 135 (290)
+|+|.|.| .|.||+.+++.|... |++|++.+|++.. .+.+.+ .++. -..+++++++++|+||.+.
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A 83 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYA 83 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECC
Confidence 47899999 699999999999988 8999999986521 111111 1111 1123456777889888765
Q ss_pred C
Q 022909 136 A 136 (290)
Q Consensus 136 p 136 (290)
.
T Consensus 84 ~ 84 (348)
T 1oc2_A 84 A 84 (348)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.017 Score=49.18 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=30.7
Q ss_pred CCeEEEEcc-cH--hHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGM-GI--MGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~-G~--iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
++++.|.|. |. ||+++++.|...|++|.+.+|+.
T Consensus 26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~ 62 (280)
T 3nrc_A 26 GKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ 62 (280)
T ss_dssp TCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence 688999985 55 99999999999999999999987
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0068 Score=56.36 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=68.8
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccCC-CHHHHhhcCCeEEEE--eCC-hhHHHHH
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQP-SPDEVAASCDVTFAM--LAD-PESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~-~~~~~~~~aDivv~~--~p~-~~~~~~~ 144 (290)
.++|.|||.|..|.+ +|+.|...|++|.++|..... .+.+++.|+.... ...+.+.++|+||+. +|. ++.....
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~a 101 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVAA 101 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHHH
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHH
Confidence 589999999999996 999999999999999976433 3456666765432 223346789999876 332 2232222
Q ss_pred hc------cccccccc-CCCCCEE-EEecCCChhHHHHHHHHHHHcCC
Q 022909 145 AC------GKHGAASG-MGPGKGY-VDVSTVDGDTSKLINGHIKATGA 184 (290)
Q Consensus 145 ~~------~~~~~~~~-~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~ 184 (290)
.. ...+++.. ++...++ |-=|.|+..+..-+...|+..+.
T Consensus 102 ~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~ 149 (494)
T 4hv4_A 102 REARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGL 149 (494)
T ss_dssp HHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence 10 00122222 3332233 32234555566666677777664
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0095 Score=51.26 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=34.2
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
+++|.|.| .|.||+++++.|...|++|++.+|++++.+.
T Consensus 18 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~ 57 (303)
T 1yxm_A 18 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKS 57 (303)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 68899998 5999999999999999999999998765543
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0097 Score=49.77 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=34.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.| .|.||+++++.|...|++|.+.+|++++.+.+
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 47 (247)
T 2jah_A 7 GKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRAL 47 (247)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 68899998 59999999999999999999999987655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 290 | ||||
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 2e-40 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 2e-36 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 7e-27 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 8e-24 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 1e-23 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 7e-23 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 1e-18 | |
| d2pv7a2 | 152 | c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA { | 4e-10 | |
| d1e5qa1 | 182 | c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase | 1e-09 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 2e-09 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 2e-08 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 3e-08 | |
| d2ahra2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 3e-07 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 6e-07 | |
| d1ks9a2 | 167 | c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc | 1e-06 | |
| d1yqga2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 2e-05 | |
| d1txga2 | 180 | c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen | 2e-04 | |
| d1n1ea2 | 189 | c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen | 0.001 | |
| d1f0ya2 | 192 | c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA | 0.002 | |
| d1wdka3 | 186 | c.2.1.6 (A:311-496) Fatty oxidation complex alpha | 0.004 |
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 136 bits (342), Expect = 2e-40
Identities = 57/160 (35%), Positives = 90/160 (56%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
++GF+G+GIMG PM++NLLKAG + V +R +I+ GA+ + +A CDV
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 61
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
ML + +VA G++G G PG +D+S++ S+ I+ +KA G L+APVS
Sbjct: 62 TMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVS 121
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG 232
G + A DG L + GDK++++ L+ M S + G
Sbjct: 122 GGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTG 161
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 126 bits (316), Expect = 2e-36
Identities = 51/160 (31%), Positives = 81/160 (50%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+I F+G+G MG PMA NLLKAG + V++ +S D L++ GA S + DV
Sbjct: 3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 62
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
+ML + + G + + PG ++ ST+ +++ I+ + G + L+APVS
Sbjct: 63 SMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVS 122
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG 232
G A G L F+ GD PL + MG++ F+ G
Sbjct: 123 GGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG 162
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 100 bits (250), Expect = 7e-27
Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 6/160 (3%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
++ F+G+G MG PMA +L + VWNRT K + VA + +
Sbjct: 2 KVAFIGLGAMGYPMAGHLARRF-PTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFT 60
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
+ + +V + G +VD ++ + + S+ + ++ G ++L+APVS
Sbjct: 61 CL----PTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVS 116
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG 232
G AE G L + G + V P L K ++G
Sbjct: 117 GGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YAKKVVHVG 155
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 93.1 bits (230), Expect = 8e-24
Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 13/177 (7%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+G +G+G+MG +A N+ + G V V+NRT SK + + A + + A F
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62
Query: 133 AMLADPESAM--------DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 184
A G VD ++A G
Sbjct: 63 AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122
Query: 185 SFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK----SRFYLGDVGNG 237
FL +SG ++ A G F G S++ + P+++ R + G+G
Sbjct: 123 RFLGMGISGGEEGARKGPAFFP-GGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 92.2 bits (228), Expect = 1e-23
Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 12/161 (7%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
R+GF+G G + +A L G +V +S + + +E SC V
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
+ + + G YVD++ + +T ++ + I+ G A +
Sbjct: 62 SAVTPGVALGAARRA------GRHVRGIYVDINNISPETVRMASSLIEKGGFVD--AAIM 113
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 233
GS + I + D L+ G + G
Sbjct: 114 GSVRRKGADIRIIASGRDA----EEFMKLNRYGLNIEVRGR 150
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 90.8 bits (224), Expect = 7e-23
Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 6/159 (3%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
I +G+ +MG + N+ G V +NRT SK D ++ AK + V+
Sbjct: 4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSK 63
Query: 133 AMLADPESAMDVAC-----GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187
+ A + G +D + + +K G F+
Sbjct: 64 LKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV 123
Query: 188 EAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK 226
+ VSG + A G + G+K + + + +
Sbjct: 124 GSGVSGGEDGARYGPSLMP-GGNKEAWPHIKAIFQGIAA 161
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 78.9 bits (193), Expect = 1e-18
Identities = 22/160 (13%), Positives = 44/160 (27%), Gaps = 10/160 (6%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 133
+ F+G G + + L + +R+ + L + + ++ V F
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61
Query: 134 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193
+ + K A V S S I + S
Sbjct: 62 I-------VPDRYIKTVANHLNLGDAVLVHCSGF---LSSEIFKKSGRASIHPNFSFSSL 111
Query: 194 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 233
K Q++F GD+ V + + + F +
Sbjct: 112 EKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS 151
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Score = 55.3 bits (132), Expect = 4e-10
Identities = 17/158 (10%), Positives = 41/158 (25%), Gaps = 23/158 (14%)
Query: 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 130
+I +G G +G A+ L +G +++ +R I A + + +
Sbjct: 10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLET 69
Query: 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLE 188
+ + D+++V + + G +
Sbjct: 70 IERLKPY-----------------LTENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMF 112
Query: 189 APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK 226
S ++ Y + + I G
Sbjct: 113 GADIASMAKQV---VVRCDGRFPERYEWLLEQIQIWGA 147
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 54.6 bits (130), Expect = 1e-09
Identities = 22/104 (21%), Positives = 31/104 (29%), Gaps = 2/104 (1%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKYQPSPDEVAASCDV 130
+ LG G + P L +G VTV RT L + + A+ D
Sbjct: 4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDA 63
Query: 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL 174
A S + S + K V S V +L
Sbjct: 64 EVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMEL 107
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 53.2 bits (126), Expect = 2e-09
Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 11/161 (6%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+IG +G+G++G +A +L + G + +R +S C+ + + D
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLS-LLQTAKI 60
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING-HIKATGASFLEAPV 191
L P + K + P DV++V ++ + G +
Sbjct: 61 IFLCTPIQLILPTLEKLIPH--LSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTA 118
Query: 192 SGSKKPAEDGQ-------LIFLAAGDKSLYNTVAPLLDIMG 225
+ AE+ L D + +L+ +G
Sbjct: 119 AQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLG 159
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 51.5 bits (123), Expect = 2e-08
Identities = 15/117 (12%), Positives = 27/117 (23%), Gaps = 4/117 (3%)
Query: 113 LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 172
+G K E D+ L D+ A + G T+
Sbjct: 127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKF 183
Query: 173 KLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF 229
I + + + G + I + N + + I F
Sbjct: 184 AKIFKDLGREDLNIT-SYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARGKAF 239
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 50.8 bits (120), Expect = 3e-08
Identities = 23/196 (11%), Positives = 55/196 (28%), Gaps = 19/196 (9%)
Query: 73 RIGFL-GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 131
R+ L G G +G +A L G ++ V +R + K + + + +
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDA 61
Query: 132 FAMLADPESAMDVACGKHGAASGM------------------GPGKGYVDVSTVDGDTSK 173
+ A G Y + ++
Sbjct: 62 AEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE 121
Query: 174 LINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 233
++ + + A + D + D+S ++ + +I G G
Sbjct: 122 VLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGP 181
Query: 234 VGNGAAMKLVVNMIMG 249
+ N ++ + +I+
Sbjct: 182 LSNSRLVESLTPLILN 197
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Score = 46.6 bits (109), Expect = 3e-07
Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 9/155 (5%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+IG +G+G M + + + L + ++ + + + + A +
Sbjct: 2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLV 61
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
+ P+ V H + G L I + + +
Sbjct: 62 ILGIKPQLFETVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSST 121
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS 227
L A + L V L D G +
Sbjct: 122 A---------LTGNALVSQELQARVRDLTDSFGST 147
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 46.4 bits (109), Expect = 6e-07
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG 114
LG+G G A L G V W+ + + G
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG 44
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Score = 45.7 bits (107), Expect = 1e-06
Identities = 13/62 (20%), Positives = 21/62 (33%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+I LG G +G L K G +V W R + + + + A+
Sbjct: 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL 61
Query: 133 AM 134
A
Sbjct: 62 AT 63
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Score = 41.5 bits (96), Expect = 2e-05
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 131
+ FLG G M +A L+K G + + NR K + L + S DV
Sbjct: 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVL 61
Query: 132 FAMLADPESAMDVACGKHGAASGMGPGKGY 161
+ + + A + G
Sbjct: 62 ILAVKPQDMEAACKNIRTNGALVLSVAAGL 91
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 39.3 bits (90), Expect = 2e-04
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC 107
+ LG G MG+ ++ L+ G +V +W
Sbjct: 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTE 36
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Score = 37.1 bits (85), Expect = 0.001
Identities = 12/72 (16%), Positives = 24/72 (33%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+ G G GT +A L K +V VW+ + + + AS
Sbjct: 9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFT 68
Query: 133 AMLADPESAMDV 144
+ + + ++
Sbjct: 69 SDVEKAYNGAEI 80
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.002
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC 107
+ +G G+MG +AQ G V + ++T+
Sbjct: 6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDIL 40
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Score = 35.3 bits (80), Expect = 0.004
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108
+ LG GIMG +A G + + + + +
Sbjct: 6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIE 41
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.97 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 99.96 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.96 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 99.96 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.96 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 99.96 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.96 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 99.96 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.95 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 99.95 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.9 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.88 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.87 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.83 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.81 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.75 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.73 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.72 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.72 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.63 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.62 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.52 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.5 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.49 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.44 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.42 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.39 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 99.36 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 99.12 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.04 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.98 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.82 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.77 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.75 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.67 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.65 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.65 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.6 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.57 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 98.52 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 98.51 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.51 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.49 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.49 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 98.48 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.46 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.44 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.43 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.43 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 98.38 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.35 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.3 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.27 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.26 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 98.22 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.22 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 98.21 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.18 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 98.14 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.13 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.12 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 98.12 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 98.12 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 98.12 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.12 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 98.09 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 98.07 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.04 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 98.03 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.03 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.02 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 98.02 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.02 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.01 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 97.99 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.97 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.97 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.95 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 97.92 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.89 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.88 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.86 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.85 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.83 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.82 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.77 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.74 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 97.74 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.73 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.72 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.7 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.69 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.68 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.68 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.68 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.67 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 97.65 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.61 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.6 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.6 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.58 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.58 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.55 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 97.51 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.5 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.5 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.49 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.48 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.48 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.46 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.46 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.45 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.44 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.4 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.38 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 97.38 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.35 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.34 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 97.33 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 97.33 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.3 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 97.25 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.25 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.21 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 97.15 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.13 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.03 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 96.98 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.95 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.9 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.85 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.85 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.83 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.81 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.81 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.8 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.77 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 96.77 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 96.75 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.75 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.73 | |
| d1qp8a2 | 121 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.7 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.7 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.69 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.68 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 96.68 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.66 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.65 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.65 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.64 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 96.63 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.6 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 96.6 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 96.58 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 96.57 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 96.56 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 96.53 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 96.52 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.51 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 96.5 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 96.46 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.45 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 96.42 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.42 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.41 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 96.4 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 96.4 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 96.38 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 96.37 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 96.37 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.36 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 96.35 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.3 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 96.3 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 96.3 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.29 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 96.29 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 96.29 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 96.27 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 96.27 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 96.26 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 96.21 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 96.21 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 96.2 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 96.2 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 96.2 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 96.19 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.18 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 96.17 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.16 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 96.14 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 96.14 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 96.14 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 96.13 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 96.13 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 96.12 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 96.1 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 96.08 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 96.07 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.04 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 96.0 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.99 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.99 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 95.98 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 95.97 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.97 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 95.95 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.95 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 95.9 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.87 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 95.86 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 95.85 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 95.76 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 95.76 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 95.76 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 95.76 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 95.75 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 95.72 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 95.72 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 95.72 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.63 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 95.6 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 95.59 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 95.56 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.55 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 95.51 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.5 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.49 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 95.49 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 95.47 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 95.47 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 95.4 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 95.34 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.32 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 95.28 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 95.26 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 95.24 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.17 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.1 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 95.09 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.05 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 95.02 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 95.02 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 95.01 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 95.0 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 94.95 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 94.94 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.94 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 94.92 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.89 | |
| d1ygya2 | 130 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 94.86 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 94.86 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.82 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 94.81 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 94.8 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.75 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 94.74 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.7 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 94.7 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 94.68 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.66 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 94.65 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 94.61 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 94.55 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 94.52 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 94.47 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.47 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.37 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 94.2 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 94.18 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 94.09 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 93.99 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.93 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 93.91 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 93.89 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 93.86 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 93.81 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.73 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 93.7 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 93.65 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 93.63 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 93.61 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 93.56 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 93.55 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 93.42 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 93.38 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 93.21 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 93.19 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 93.18 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 93.14 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 92.97 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 92.95 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 92.93 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 92.91 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.84 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 92.82 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 92.8 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 92.79 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 92.64 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.6 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 92.54 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 92.4 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 92.37 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 92.36 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 92.3 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 92.28 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 92.28 | |
| d1pjca2 | 193 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 92.28 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.04 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 92.03 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 91.99 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 91.98 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 91.96 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.91 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 91.91 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 91.79 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 91.7 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 91.54 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 91.51 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 91.48 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 91.4 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.4 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 91.33 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 91.28 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 91.22 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 91.06 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 91.02 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 90.67 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 90.55 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 90.36 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 90.09 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 90.0 | |
| d1mx3a2 | 133 | Transcription corepressor CtbP {Human (Homo sapien | 89.86 | |
| d1js1x2 | 161 | Transcarbamylase-like protein {Bacteroides fragili | 89.81 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 89.74 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 89.63 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 89.48 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 89.46 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 89.08 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 89.01 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 88.68 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 88.67 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 88.49 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 88.45 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 88.42 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 88.2 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 88.09 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 88.03 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 88.0 | |
| d2ftsa3 | 155 | Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId | 87.83 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 87.5 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 87.49 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 87.47 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 87.35 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 87.33 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 87.16 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 87.15 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 86.98 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 86.81 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 86.63 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 86.19 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 86.14 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 86.13 | |
| d2arka1 | 184 | Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | 85.82 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 85.74 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 85.35 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 85.34 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 85.15 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 85.08 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.87 | |
| d2qwxa1 | 230 | Quinone reductase type 2 (menadione reductase) {Hu | 84.81 | |
| d5nula_ | 138 | Flavodoxin {Clostridium beijerinckii [TaxId: 1520] | 84.57 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 84.49 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 84.46 | |
| d2fzva1 | 233 | Putative arsenical resistance protein {Shigella fl | 84.13 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 84.01 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 83.54 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 83.29 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 83.21 | |
| d1q7ra_ | 202 | Hypothetical protein YaaE {Bacillus stearothermoph | 83.01 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 82.86 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 82.81 | |
| d3cmco1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.58 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 82.39 | |
| d1vmea1 | 148 | ROO-like flavoprotein TM0755, C-terminal domain {T | 82.21 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 81.6 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 81.54 | |
| d1gr0a1 | 243 | Myo-inositol 1-phosphate synthase {Mycobacterium t | 81.05 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 81.04 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 80.88 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 80.79 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 80.73 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 80.3 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 80.23 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 80.02 |
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=99.97 E-value=1.3e-32 Score=224.37 Aligned_cols=169 Identities=12% Similarity=0.111 Sum_probs=148.6
Q ss_pred ccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHHC
Q 022909 14 LSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKA 93 (290)
Q Consensus 14 ~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~~ 93 (290)
+|+||++++|+|++.|+++++++.+++|.|..+....+..+.+. +++|||||+|+||+.+|+++..+
T Consensus 3 ~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~-------------g~tvgIiG~G~IG~~va~~l~~f 69 (191)
T d1gdha1 3 VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLD-------------NKTLGIYGFGSIGQALAKRAQGF 69 (191)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCT-------------TCEEEEECCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceec-------------ccceEEeecccchHHHHHHHHhh
Confidence 58899999999999999999999999999986544443335555 89999999999999999999999
Q ss_pred CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHH
Q 022909 94 GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSK 173 (290)
Q Consensus 94 g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~ 173 (290)
|++|.+||++..........+....+++++++++||+|++|+|.+++|++++ +++.++.||+++++||+|||..++++
T Consensus 70 g~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li--~~~~l~~mk~~a~lIN~sRG~ivde~ 147 (191)
T d1gdha1 70 DMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF--NKATIKSLPQGAIVVNTARGDLVDNE 147 (191)
T ss_dssp TCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCB--SHHHHTTSCTTEEEEECSCGGGBCHH
T ss_pred ccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhhee--cHHHhhCcCCccEEEecCCccchhhH
Confidence 9999999998765444444455666799999999999999999999999999 88999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEeCccCCCCcc
Q 022909 174 LINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 174 ~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
+|.++|+++.+.....+++..||.
T Consensus 148 aL~~aL~~g~i~~a~lDV~~~EP~ 171 (191)
T d1gdha1 148 LVVAALEAGRLAYAGFDVFAGEPN 171 (191)
T ss_dssp HHHHHHHHTSEEEEEESCCTTTTS
T ss_pred HHHHHHHcCCceEEEEECCCCCCC
Confidence 999999999888777788877763
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.96 E-value=4.3e-31 Score=214.33 Aligned_cols=163 Identities=17% Similarity=0.152 Sum_probs=142.1
Q ss_pred cCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHHCC
Q 022909 15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAG 94 (290)
Q Consensus 15 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~~g 94 (290)
|+||++++++|++.|+++.+++.++++.|.+... ..+.+. ++++||+|+|+||+.+++++..+|
T Consensus 4 sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~---~~~~l~-------------~k~vgiiG~G~IG~~va~~~~~fg 67 (184)
T d1ygya1 4 SAAEHALALLLAASRQIPAADASLREHTWKRSSF---SGTEIF-------------GKTVGVVGLGRIGQLVAQRIAAFG 67 (184)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGC---CBCCCT-------------TCEEEEECCSHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc---cccccc-------------ceeeeeccccchhHHHHHHhhhcc
Confidence 7899999999999999999999999999974321 113444 899999999999999999999999
Q ss_pred CeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHH
Q 022909 95 CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL 174 (290)
Q Consensus 95 ~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~ 174 (290)
++|.+||++..+.. ....++.. .+++|++++||+|++|+|.+++|++++ +++.++.||+++++||+|||..+++++
T Consensus 68 ~~v~~~d~~~~~~~-~~~~~~~~-~~l~ell~~sDiv~~~~Plt~~T~~li--n~~~l~~mk~~a~lIN~sRG~iVde~a 143 (184)
T d1ygya1 68 AYVVAYDPYVSPAR-AAQLGIEL-LSLDDLLARADFISVHLPKTPETAGLI--DKEALAKTKPGVIIVNAARGGLVDEAA 143 (184)
T ss_dssp CEEEEECTTSCHHH-HHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHTTSCTTEEEEECSCTTSBCHHH
T ss_pred ceEEeecCCCChhH-HhhcCcee-ccHHHHHhhCCEEEEcCCCCchhhhhh--hHHHHhhhCCCceEEEecchhhhhhHH
Confidence 99999999875433 33344554 489999999999999999999999999 889999999999999999999999999
Q ss_pred HHHHHHHcCCcEEeCccCCCCcc
Q 022909 175 INGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 175 l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
|.++|+++.+.....+++..||.
T Consensus 144 L~~aL~~~~i~~a~lDV~~~EP~ 166 (184)
T d1ygya1 144 LADAITGGHVRAAGLDVFATEPC 166 (184)
T ss_dssp HHHHHHTSSEEEEEESSCSSSSC
T ss_pred HHHHHhcCcEeEEEEeCCCCCCC
Confidence 99999999888777778877764
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=99.96 E-value=3e-31 Score=216.29 Aligned_cols=169 Identities=8% Similarity=0.029 Sum_probs=146.2
Q ss_pred ccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHHC
Q 022909 14 LSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKA 93 (290)
Q Consensus 14 ~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~~ 93 (290)
+|+||++++++|++.|+++++++.+++|.|+........ +.+. +++|||||+|+||+.++++++.+
T Consensus 1 isVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~-~~l~-------------~~~vgiiG~G~IG~~va~~l~~f 66 (188)
T d2naca1 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHA-YDLE-------------AMHVGTVAAGRIGLAVLRRLAPF 66 (188)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTC-CCCT-------------TCEEEEECCSHHHHHHHHHHGGG
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcc-eecc-------------ccceeeccccccchhhhhhhhcc
Confidence 578999999999999999999999999999743211111 3344 89999999999999999999999
Q ss_pred CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHH
Q 022909 94 GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSK 173 (290)
Q Consensus 94 g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~ 173 (290)
|++|.+||+.........+.+.....++++++++||+|++|+|.+++|++++ +++.++.||++++|||+||+..++++
T Consensus 67 g~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li--~~~~l~~mk~ga~lIN~aRG~ivd~~ 144 (188)
T d2naca1 67 DVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI--NDETLKLFKRGAYIVNTARGKLCDRD 144 (188)
T ss_dssp TCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCB--SHHHHTTSCTTEEEEECSCGGGBCHH
T ss_pred CceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhh--HHHHHHhCCCCCEEEecCchhhhhHH
Confidence 9999999998765555555667778899999999999999999999999999 88999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEeCccCCCCccc
Q 022909 174 LINGHIKATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 174 ~l~~~l~~~~~~~~~~p~~~~~~~~ 198 (290)
+|.++|+++.+.....+++..||..
T Consensus 145 aL~~aL~~g~i~ga~lDV~~~EP~~ 169 (188)
T d2naca1 145 AVARALESGRLAGYAGDVWFPQPAP 169 (188)
T ss_dssp HHHHHHHTTSEEEEEESCCSSSSCC
T ss_pred HHHHHHhCCCceeEEEeCCCCCCCC
Confidence 9999999998876667777666543
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=99.96 E-value=1.2e-30 Score=212.87 Aligned_cols=167 Identities=11% Similarity=0.038 Sum_probs=143.1
Q ss_pred cCCCCcchhhhccCCCCccccccccCCCCCCCCCc----ccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHH
Q 022909 15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLF----PLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNL 90 (290)
Q Consensus 15 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l 90 (290)
++||++++++|++.|+++.+++.+++|.|.+.... ....+++. +++|||||+|+||+.+|+++
T Consensus 2 ~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~-------------gktvgIiG~G~IG~~va~~l 68 (193)
T d1mx3a1 2 ETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIR-------------GETLGIIGLGRVGQAVALRA 68 (193)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCT-------------TCEEEEECCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeee-------------CceEEEeccccccccceeee
Confidence 57889999999999999999999999999753210 11113444 89999999999999999999
Q ss_pred HHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChh
Q 022909 91 LKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 91 ~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~ 170 (290)
..+|++|.+||+..... .....++...+++++++++||+|++|+|.+++|++++ +++.++.||+++++||+|||..+
T Consensus 69 ~~fg~~v~~~d~~~~~~-~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li--~~~~l~~mk~~a~lIN~sRG~iv 145 (193)
T d1mx3a1 69 KAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLI--NDFTVKQMRQGAFLVNTARGGLV 145 (193)
T ss_dssp HTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSB--SHHHHTTSCTTEEEEECSCTTSB
T ss_pred eccccceeeccCccccc-chhhhccccccchhhccccCCEEEEeecccccchhhh--hHHHHhccCCCCeEEecCCceEE
Confidence 99999999999986542 2334567778899999999999999999999999999 88899999999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 171 TSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 171 ~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
++++|.++|+++.+.....+++..|+.
T Consensus 146 de~aL~~aL~~~~i~~a~lDV~~~EP~ 172 (193)
T d1mx3a1 146 DEKALAQALKEGRIRGAALDVHESEPF 172 (193)
T ss_dssp CHHHHHHHHHHTSEEEEEESCCSSSSC
T ss_pred cHHHHHHHHHcCCceEEEEEcCCCCCC
Confidence 999999999999887777777776653
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=2.6e-29 Score=200.01 Aligned_cols=161 Identities=35% Similarity=0.620 Sum_probs=151.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~ 151 (290)
|||||||+|+||..+|++|.+.|++|.+|||++++.+.+.+.+.....+..|+++++|+|++++|.+++++.++.....+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence 68999999999999999999999999999999999999988889999999999999999999999999999988655567
Q ss_pred cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEe
Q 022909 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 152 ~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 231 (290)
+..+++++++||+|+..+.....+.+.+++++++|+++|+++++..+..+.++++++|+++++++++++|+.+|.+++++
T Consensus 81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il~~~~~~i~~~ 160 (161)
T d1vpda2 81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT 160 (161)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEEC
Confidence 88899999999999999999999999999999999999999999888889999999999999999999999999988887
Q ss_pred C
Q 022909 232 G 232 (290)
Q Consensus 232 ~ 232 (290)
|
T Consensus 161 G 161 (161)
T d1vpda2 161 G 161 (161)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=99.96 E-value=2.8e-30 Score=211.07 Aligned_cols=163 Identities=14% Similarity=0.084 Sum_probs=141.0
Q ss_pred cCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHHCC
Q 022909 15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAG 94 (290)
Q Consensus 15 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~~g 94 (290)
|+||++++++|++.|+++.+++.+++|.|.+.... + +++. +++|||||+|+||+.+|+++..+|
T Consensus 3 aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~--g-~el~-------------gk~vgIiG~G~IG~~va~~l~~fg 66 (197)
T d1j4aa1 3 AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTI--G-REVR-------------DQVVGVVGTGHIGQVFMQIMEGFG 66 (197)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCC--B-CCGG-------------GSEEEEECCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCc--C-cccc-------------CCeEEEecccccchhHHHhHhhhc
Confidence 78889999999999999999999999988643322 2 5566 899999999999999999999999
Q ss_pred CeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHH
Q 022909 95 CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL 174 (290)
Q Consensus 95 ~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~ 174 (290)
++|.+||+..+... ...+. ...++++++++||+|++|+|.+++|++++ +++.++.|++++++||+|||..+++++
T Consensus 67 ~~V~~~d~~~~~~~--~~~~~-~~~~l~~~l~~sDii~~~~plt~~T~~li--~~~~l~~mk~~a~lIN~sRG~ivde~a 141 (197)
T d1j4aa1 67 AKVITYDIFRNPEL--EKKGY-YVDSLDDLYKQADVISLHVPDVPANVHMI--NDESIAKMKQDVVIVNVSRGPLVDTDA 141 (197)
T ss_dssp CEEEEECSSCCHHH--HHTTC-BCSCHHHHHHHCSEEEECSCCCGGGTTCB--SHHHHHHSCTTEEEEECSCGGGBCHHH
T ss_pred ccccccCccccccc--cccee-eeccccccccccccccccCCccccccccc--cHHHHhhhCCccEEEecCchhhhhhHH
Confidence 99999998765322 22333 45689999999999999999999999999 888999999999999999999999999
Q ss_pred HHHHHHHcCCcEEeCccCCCCccc
Q 022909 175 INGHIKATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 175 l~~~l~~~~~~~~~~p~~~~~~~~ 198 (290)
|.++|+++.+.....+++..|+..
T Consensus 142 L~~aL~~~~i~~a~lDV~~~Ep~~ 165 (197)
T d1j4aa1 142 VIRGLDSGKIFGYAMDVYEGEVGI 165 (197)
T ss_dssp HHHHHHHTSEEEEEESCCTTCTTT
T ss_pred HHHHHhcccchheeeeccccCCcc
Confidence 999999998887777888777643
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.96 E-value=6.1e-30 Score=206.60 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=136.3
Q ss_pred cCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHHCC
Q 022909 15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAG 94 (290)
Q Consensus 15 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~~g 94 (290)
+++|++++++|++.|+++.+.+.+++|.|.+.... ..+. +++|||||+|+||+.+++.+..+|
T Consensus 3 aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~~----~~l~-------------gk~vgIiG~G~IG~~va~~l~~~g 65 (181)
T d1qp8a1 3 AVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEI----PLIQ-------------GEKVAVLGLGEIGTRVGKILAALG 65 (181)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCC----CCCT-------------TCEEEEESCSTHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCC----Cccc-------------CceEEEeccccccccceeeeeccc
Confidence 67899999999999999999999999999754322 2344 899999999999999999999999
Q ss_pred CeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHH
Q 022909 95 CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL 174 (290)
Q Consensus 95 ~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~ 174 (290)
++|.+|||++... .....+++++++++||+|++|+|.+++|++++ +++.++.||++++|||+||+..+++++
T Consensus 66 ~~v~~~d~~~~~~------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li--~~~~l~~mk~~ailIN~~RG~ivd~~a 137 (181)
T d1qp8a1 66 AQVRGFSRTPKEG------PWRFTNSLEEALREARAAVCALPLNKHTRGLV--KYQHLALMAEDAVFVNVGRAEVLDRDG 137 (181)
T ss_dssp CEEEEECSSCCCS------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCB--CHHHHTTSCTTCEEEECSCGGGBCHHH
T ss_pred ccccccccccccc------ceeeeechhhhhhccchhhccccccccccccc--ccceeeeccccceEEeccccccccchh
Confidence 9999999987532 13345689999999999999999999999999 889999999999999999999999999
Q ss_pred HHHHHHHcCCcEEeCccCCCC
Q 022909 175 INGHIKATGASFLEAPVSGSK 195 (290)
Q Consensus 175 l~~~l~~~~~~~~~~p~~~~~ 195 (290)
|.++|+++.+.....+++..+
T Consensus 138 L~~aL~~~~i~~aalDV~~~e 158 (181)
T d1qp8a1 138 VLRILKERPQFIFASDVWWGR 158 (181)
T ss_dssp HHHHHHHCTTCEEEESCCTTT
T ss_pred hhhhcccCcEEEEEEecCCCC
Confidence 999999998876666665433
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.96 E-value=1.2e-30 Score=214.12 Aligned_cols=161 Identities=13% Similarity=0.111 Sum_probs=139.9
Q ss_pred cCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHHCC
Q 022909 15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAG 94 (290)
Q Consensus 15 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~~g 94 (290)
|+||++++++|++.|+++.+++.+++|.|.....+ .. +++. +++|||||+|+||+.+|+++..+|
T Consensus 4 aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~-~~-~~l~-------------~ktvgIiG~G~IG~~va~~l~~fg 68 (199)
T d1dxya1 4 AIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IG-KELG-------------QQTVGVMGTGHIGQVAIKLFKGFG 68 (199)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCC-CC-CCGG-------------GSEEEEECCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCc-cc-cccc-------------ceeeeeeecccccccccccccccc
Confidence 78999999999999999999999999999743322 22 4565 899999999999999999999999
Q ss_pred CeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHH
Q 022909 95 CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL 174 (290)
Q Consensus 95 ~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~ 174 (290)
++|++||+++..... .... ..+++++++.||+|++++|.+++|++++ +++.++.||+++++||+|||.++++++
T Consensus 69 ~~v~~~d~~~~~~~~---~~~~-~~~l~~l~~~~D~v~~~~plt~~T~~li--~~~~l~~mk~~a~lIN~aRG~vvde~a 142 (199)
T d1dxya1 69 AKVIAYDPYPMKGDH---PDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHII--NEAAFNLMKPGAIVINTARPNLIDTQA 142 (199)
T ss_dssp CEEEEECSSCCSSCC---TTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSB--CHHHHHHSCTTEEEEECSCTTSBCHHH
T ss_pred eeeeccCCccchhhh---cchh-HHHHHHHHHhcccceeeecccccccccc--cHHHhhccCCceEEEecccHhhhhhHH
Confidence 999999998654221 1233 3589999999999999999999999999 889999999999999999999999999
Q ss_pred HHHHHHHcCCcEEeCccCCCCc
Q 022909 175 INGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 175 l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
|.++|+++.+.....+++..|+
T Consensus 143 L~~aL~~g~i~ga~lDV~~~EP 164 (199)
T d1dxya1 143 MLSNLKSGKLAGVGIDTYEYET 164 (199)
T ss_dssp HHHHHHTTSEEEEEESSCTTHH
T ss_pred HHHHHhcCCcceEeccccCCCC
Confidence 9999999988877778877665
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=6.7e-28 Score=191.92 Aligned_cols=161 Identities=32% Similarity=0.555 Sum_probs=150.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~ 151 (290)
++|||||+|.||..+|++|.+.|++|.+|||++++.+.+.+.+.....++.++++++|+|++++|.++..+.++.....+
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~ 81 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 81 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence 68999999999999999999999999999999999888888888888899999999999999999999988887554567
Q ss_pred cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEe
Q 022909 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 152 ~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 231 (290)
...++++.++||+|+..+....++.+.+++.+++|+++|+++++..+..+.++++++|+++++++++++|+.+|++++++
T Consensus 82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~il~~~~~~v~~~ 161 (162)
T d3cuma2 82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHA 161 (162)
T ss_dssp HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEE
T ss_pred cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHHHHHHcCccEEC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999989887
Q ss_pred C
Q 022909 232 G 232 (290)
Q Consensus 232 ~ 232 (290)
|
T Consensus 162 G 162 (162)
T d3cuma2 162 G 162 (162)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.1e-29 Score=204.20 Aligned_cols=161 Identities=12% Similarity=0.017 Sum_probs=134.0
Q ss_pred cCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHHCC
Q 022909 15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAG 94 (290)
Q Consensus 15 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~~g 94 (290)
|++|++++++|++.|+++.+++.++++.|.+..... +.+. +++|||||+|+||+.+|+++..+|
T Consensus 4 aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~---~~l~-------------~~~vgiiG~G~IG~~va~~l~~fg 67 (188)
T d1sc6a1 4 SVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGS---FEAR-------------GKKLGIIGYGHIGTQLGILAESLG 67 (188)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----C---CCST-------------TCEEEEECCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHhCCCccccccc---cccc-------------ceEEEEeecccchhhhhhhccccc
Confidence 789999999999999999999999999998543222 3444 899999999999999999999999
Q ss_pred CeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHH
Q 022909 95 CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL 174 (290)
Q Consensus 95 ~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~ 174 (290)
++|.+||+...... .......++++++++||+|++|+|.+++|++++ +++.++.|++++++||+||+..+++++
T Consensus 68 ~~v~~~d~~~~~~~----~~~~~~~~l~ell~~sDii~i~~plt~~T~~li--~~~~l~~mk~~a~lIN~aRG~lvde~a 141 (188)
T d1sc6a1 68 MYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMM--GAKEISLMKPGSLLINASRGTVVDIPA 141 (188)
T ss_dssp CEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCB--CHHHHHHSCTTEEEEECSCSSSBCHHH
T ss_pred ceEeeccccccchh----hhhhhhhhHHHHHhhccceeecccCCcchhhhc--cHHHHhhCCCCCEEEEcCcHHhhhhHH
Confidence 99999998754322 123445689999999999999999999999999 889999999999999999999999999
Q ss_pred HHHHHHHcCCcEEeCccCCCCcc
Q 022909 175 INGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 175 l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
|.++|+++.+.....+++..||.
T Consensus 142 L~~aL~~~~~~~a~lDV~~~EP~ 164 (188)
T d1sc6a1 142 LADALASKHLAGAAIDVFPTEPA 164 (188)
T ss_dssp HHHHHHTTSEEEEEEEC------
T ss_pred HHHHHHcCCceEEEEecCCCCCC
Confidence 99999998877766677766654
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.90 E-value=2.6e-24 Score=173.21 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=136.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC--------ccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA--------KYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~--------~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
..+|||||+|+||..+|++|.+.|++|.+|||++++.+++.+.+. ....++.+.+..+|++++++|..+.+.
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~ 81 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence 368999999999999999999999999999999999888876533 223345566778999999999999888
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHH
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~ 222 (290)
.+. .++++.++++.++||+|+..+.+..++.+.+.+.++.|+++|+++++..+..+. +++++|+++.+++++++|+
T Consensus 82 ~v~---~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG~~~~~~~~~~il~ 157 (176)
T d2pgda2 82 NFI---EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQ 157 (176)
T ss_dssp HHH---HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHH
T ss_pred HHH---HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCCCHHHHHHHHHHHH
Confidence 887 467888999999999999999999999999999999999999999988887787 6788999999999999999
Q ss_pred HhCCcEE
Q 022909 223 IMGKSRF 229 (290)
Q Consensus 223 ~~G~~~~ 229 (290)
.++.++.
T Consensus 158 ~~~~kv~ 164 (176)
T d2pgda2 158 GIAAKVG 164 (176)
T ss_dssp HHSCBCT
T ss_pred HHhcccC
Confidence 9998653
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=2.5e-23 Score=164.21 Aligned_cols=155 Identities=28% Similarity=0.428 Sum_probs=134.4
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccccc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAA 152 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~ 152 (290)
||||||+|+||..+|++|.+.|+.+ +|+|++++...+.+.+.....+ .+.+.++|++++++|.+.++.... ..++
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~---~~l~ 76 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVP-LERVAEARVIFTCLPTTREVYEVA---EALY 76 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECC-GGGGGGCSEEEECCSSHHHHHHHH---HHHT
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccc-cccccceeEEEecccchhhhhhhh---cccc
Confidence 6999999999999999999988865 6888777666555533333333 456678999999999988887766 5678
Q ss_pred ccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeC
Q 022909 153 SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG 232 (290)
Q Consensus 153 ~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~ 232 (290)
+.++++.++||+|+..+...+++.+.+++.+++|+++|+++++..+..+.+.++++|+++++++++++|+ ++.+++++|
T Consensus 77 ~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L~-~~~~v~~~G 155 (156)
T d2cvza2 77 PYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YAKKVVHVG 155 (156)
T ss_dssp TTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGCT-TEEEEEEEE
T ss_pred ccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHHH-hcCcCEEeC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999994 888899987
Q ss_pred C
Q 022909 233 D 233 (290)
Q Consensus 233 ~ 233 (290)
+
T Consensus 156 P 156 (156)
T d2cvza2 156 P 156 (156)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.87 E-value=1e-22 Score=164.11 Aligned_cols=162 Identities=20% Similarity=0.333 Sum_probs=138.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc--------cCCCHHH---HhhcCCeEEEEeCChhH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------YQPSPDE---VAASCDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--------~~~~~~~---~~~~aDivv~~~p~~~~ 140 (290)
|||||||+|+||..+|++|.+.|++|.+|||++++.+.+.+.+.. ...+.++ .+..++.+++.++....
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 789999999999999999999999999999999998888764322 1233333 34578889999988787
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHH
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 220 (290)
...++ ......++++.++||+++..+.+...+.+.+.+.++.|+++|+++++..+..+. +++++|+++++++++++
T Consensus 82 ~~~~~---~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~mvgG~~~~~~~v~pi 157 (178)
T d1pgja2 82 TDSTI---EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPI 157 (178)
T ss_dssp HHHHH---HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHHH
T ss_pred hhhhh---hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEEeeCCHHHHHHHHHH
Confidence 77777 445778899999999999999999999999999999999999999888877776 67899999999999999
Q ss_pred HHHhCCcEE----EeCCcchH
Q 022909 221 LDIMGKSRF----YLGDVGNG 237 (290)
Q Consensus 221 l~~~G~~~~----~~~~~g~a 237 (290)
|+.++.++. +++..|.+
T Consensus 158 l~~~~~~~~~~~~~~g~~G~G 178 (178)
T d1pgja2 158 VEAAAAKADDGRPCVTMNGSG 178 (178)
T ss_dssp HHHHSCBCTTSCBSCCCCCST
T ss_pred HHHHhccccCCCCccCCCCCC
Confidence 999998877 77777653
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.83 E-value=2.4e-20 Score=148.07 Aligned_cols=152 Identities=16% Similarity=0.245 Sum_probs=115.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-cCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
|||||||+|+||..+|+.|++.|++|.+|||+++..+.+.+.+.. ...+..+.++++|+|++++|. ..+..++ ++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl---~~ 76 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTL---EK 76 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHH---HH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhh---hh
Confidence 689999999999999999999999999999999888877776642 233445678999999999985 6788888 56
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE-eCccCCCCcc----c----cCCceEEEe---cCCHHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKP----A----EDGQLIFLA---AGDKSLYNTVA 218 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~-~~p~~~~~~~----~----~~~~~~~~~---~~~~~~~~~v~ 218 (290)
+.+.++++.+++++++........+.+... .++ .+|+++++.. . ..+...+++ +++++.++.++
T Consensus 77 l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~----~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~ 152 (165)
T d2f1ka2 77 LIPHLSPTAIVTDVASVKTAIAEPASQLWS----GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLR 152 (165)
T ss_dssp HGGGSCTTCEEEECCSCCHHHHHHHHHHST----TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHH
T ss_pred hhhhcccccceeeccccchHHHHHHHHhhc----ccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHH
Confidence 788899999999998887665555443322 233 3566554322 1 123444443 56789999999
Q ss_pred HHHHHhCCcEEEe
Q 022909 219 PLLDIMGKSRFYL 231 (290)
Q Consensus 219 ~ll~~~G~~~~~~ 231 (290)
++++.+|.++++|
T Consensus 153 ~l~~~lG~~v~~c 165 (165)
T d2f1ka2 153 SVLEPLGVKIYLC 165 (165)
T ss_dssp HHHGGGTCEEEEC
T ss_pred HHHHHhCCEEEeC
Confidence 9999999998875
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.81 E-value=2e-20 Score=146.67 Aligned_cols=150 Identities=20% Similarity=0.267 Sum_probs=117.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~ 151 (290)
|||||||+|+||+.+|+.|.+.|++|.+|++++.+.......+.....+.+|+++++|+|++++|.+... .++ .+.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~-~~~---~~~ 76 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVAL-GAA---RRA 76 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHH-HHH---HHH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHH-HHH---Hhh
Confidence 6899999999999999999999999999998877665555544555678899999999999999876544 443 112
Q ss_pred cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEe
Q 022909 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 152 ~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 231 (290)
... .+.++|++|+..+...+.+.+.+++. .|+++|++++++....+..+++.|++.+.++ .|+.+|..+.++
T Consensus 77 ~~~--~~~~~id~st~~p~~~~~l~~~~~~~--~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~----~l~~~g~~i~~~ 148 (152)
T d1i36a2 77 GRH--VRGIYVDINNISPETVRMASSLIEKG--GFVDAAIMGSVRRKGADIRIIASGRDAEEFM----KLNRYGLNIEVR 148 (152)
T ss_dssp HTT--CCSEEEECSCCCHHHHHHHHHHCSSS--EEEEEEECSCHHHHGGGCEEEEESTTHHHHH----GGGGGTCEEEEC
T ss_pred ccc--CCceeeccCcCCHHHHHHHHHHHhcc--CCCcccccCCcccccCCcEEEEECCCHHHHH----HHHHcCCeeeEc
Confidence 222 36789999999999999998887643 5899999998777777777666666654443 378899988888
Q ss_pred CC
Q 022909 232 GD 233 (290)
Q Consensus 232 ~~ 233 (290)
++
T Consensus 149 G~ 150 (152)
T d1i36a2 149 GR 150 (152)
T ss_dssp SS
T ss_pred CC
Confidence 75
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.75 E-value=1.1e-17 Score=130.64 Aligned_cols=140 Identities=14% Similarity=0.203 Sum_probs=114.4
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
.+||+||| +|.||+.+|+.|.+.|++|.+||+++.. +.++.++++|++++++|. ..+..++ .
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-------------~~~~~~~~~~~v~~~~~~-~~~~~v~---~ 71 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVPI-NLTLETI---E 71 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECSCG-GGHHHHH---H
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-------------ccchhhhhccccccccch-hhheeee---e
Confidence 58999999 9999999999999999999999998653 234567889999999986 5566666 5
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEe-cCCHHHHHHHHHHHHHhCCc
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLA-AGDKSLYNTVAPLLDIMGKS 227 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~ll~~~G~~ 227 (290)
+..+.++++++++|+++......+.+.+.+ ..+|+. +|+++++.....+...+++ +++++.++++.++|+.+|.+
T Consensus 72 ~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~---~~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ll~~~Ga~ 148 (152)
T d2pv7a2 72 RLKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAK 148 (152)
T ss_dssp HHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCE
T ss_pred cccccccCCceEEEecccCHHHHHHHHHHc---cCCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHHHHHHhCCE
Confidence 678889999999999999887777766544 335665 8999998877777666555 56778899999999999998
Q ss_pred EEE
Q 022909 228 RFY 230 (290)
Q Consensus 228 ~~~ 230 (290)
++.
T Consensus 149 v~e 151 (152)
T d2pv7a2 149 IYQ 151 (152)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.73 E-value=5.6e-17 Score=128.97 Aligned_cols=153 Identities=18% Similarity=0.276 Sum_probs=117.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHhCCCc--cCCCHHHH-hhcCCeEEEEeCChhHHHHHhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAK--YQPSPDEV-AASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~-~~~aDivv~~~p~~~~~~~~~~ 146 (290)
++|+|||+|.||..+|+.|.+.|+ +|++||++++..+.+.+.+.. ...+.++. ..++|+|++|+|. ..+..++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl- 79 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA- 79 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh-
Confidence 579999999999999999999885 799999999888877776542 23344443 3479999999975 6677777
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccc--------cCCceEEEec---CCHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPA--------EDGQLIFLAA---GDKSLY 214 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~--------~~~~~~~~~~---~~~~~~ 214 (290)
+++.+.++++.+++++++......+++.+.+.. +|+. ||+.+.+... ..+...+++. .+++.+
T Consensus 80 --~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~---~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~ 154 (171)
T d2g5ca2 80 --KKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRL 154 (171)
T ss_dssp --HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHH
T ss_pred --hhhhccccccccccccccccHHHHHHHHHhhcc---cccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHH
Confidence 456778999999999999988888787776654 3554 8888765321 2355555653 467889
Q ss_pred HHHHHHHHHhCCcEEEe
Q 022909 215 NTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 215 ~~v~~ll~~~G~~~~~~ 231 (290)
+.++++++.+|.++..+
T Consensus 155 ~~v~~~~~~lG~~v~~M 171 (171)
T d2g5ca2 155 KLVKRVWEDVGGVVEYM 171 (171)
T ss_dssp HHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHcCCEEEeC
Confidence 99999999999987654
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=3.6e-19 Score=139.45 Aligned_cols=150 Identities=14% Similarity=0.060 Sum_probs=105.4
Q ss_pred EEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccc
Q 022909 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAAS 153 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~ 153 (290)
|||||+|+||+++++.|...+..+.+|+|++++.+.+.+.+...+.+.+++++++|+|++++|. ..+..++ .++
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d-~~i~~v~---~~l-- 75 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPD-RYIKTVA---NHL-- 75 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCT-TTHHHHH---TTT--
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccc-hhhhHHH---hhh--
Confidence 7999999999999999977555557999999999998886656667888999999999999986 5666766 222
Q ss_pred cCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCC
Q 022909 154 GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 233 (290)
Q Consensus 154 ~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~ 233 (290)
-+++.++|++|.+.+.+.. +.....+.+++..|..+...........+..++++++++.++++++.+|.+++++++
T Consensus 76 -~~~~~ivi~~s~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~i~~ 151 (153)
T d2i76a2 76 -NLGDAVLVHCSGFLSSEIF---KKSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS 151 (153)
T ss_dssp -CCSSCCEEECCSSSCGGGG---CSSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECCG
T ss_pred -cccceeeeecccchhhhhh---hhhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEEEeCC
Confidence 2478999999887664321 112223344444554444444444455567788899999999999999998988865
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.72 E-value=2e-17 Score=129.17 Aligned_cols=146 Identities=14% Similarity=0.238 Sum_probs=108.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
|||||||+|+||+++++.|...|++|++|+|++++.+++.+ .|+..+.+.+++++++|+|+++++ ++....++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~~~~vl----- 74 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVL----- 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHH-----
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHhHHHHh-----
Confidence 68999999999999999999999999999999988887754 688888899999999999999995 56666665
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecC--CHHHHHHHHHHHHHhCCc
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKS 227 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~ll~~~G~~ 227 (290)
+.++++.++|++..+ ...+.+.+.+.. +.+++. +|+.... ...+...+..+. +++..+.++++|+.+|..
T Consensus 75 --~~l~~~~~iis~~ag--i~~~~l~~~l~~-~~~ivr~mPN~~~~--v~~g~~~~~~~~~~~~~~~~~v~~l~~~~G~~ 147 (152)
T d2ahra2 75 --KPLHFKQPIISMAAG--ISLQRLATFVGQ-DLPLLRIMPNMNAQ--ILQSSTALTGNALVSQELQARVRDLTDSFGST 147 (152)
T ss_dssp --TTSCCCSCEEECCTT--CCHHHHHHHHCT-TSCEEEEECCGGGG--GTCEEEEEEECTTCCHHHHHHHHHHHHTTEEE
T ss_pred --hhcccceeEeccccc--ccHHHHHhhhcc-cccchhhccchhhh--cCccceEEEeCCCCCHHHHHHHHHHHHhCCCE
Confidence 446788999987654 344566666643 344544 5654322 223333333332 578899999999999974
Q ss_pred EEEe
Q 022909 228 RFYL 231 (290)
Q Consensus 228 ~~~~ 231 (290)
+.+
T Consensus 148 -~~v 150 (152)
T d2ahra2 148 -FDI 150 (152)
T ss_dssp -EEC
T ss_pred -EEe
Confidence 444
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.63 E-value=3.5e-16 Score=121.99 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=102.4
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
|||||||+|+||+++++.|.+.| ++|.+|||++++.+.+.+ .++...++.++ ++++|+|+++++ |++...++ +
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk-P~~~~~v~---~ 75 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK-PQDMEAAC---K 75 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC-HHHHHHHH---T
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC-HHHHHHhH---H
Confidence 68999999999999999988776 899999999998888776 57877766665 578999999996 67777776 2
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecC--CHHHHHHHHHHHHHhCC
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGK 226 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~ll~~~G~ 226 (290)
++ ...+.++|++..+. ..+.+.+.+... .+++. +|... .....+...+..+. +++..+.++++|+.+|.
T Consensus 76 ~l---~~~~~~viS~~ag~--~~~~l~~~l~~~-~~iir~mpn~p--~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~ 147 (152)
T d1yqga2 76 NI---RTNGALVLSVAAGL--SVGTLSRYLGGT-RRIVRVMPNTP--GKIGLGVSGMYAEAEVSETDRRIADRIMKSVGL 147 (152)
T ss_dssp TC---CCTTCEEEECCTTC--CHHHHHHHTTSC-CCEEEEECCGG--GGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEE
T ss_pred HH---hhcccEEeecccCC--CHHHHHHHhCcC-cceEeecccch--hHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCC
Confidence 22 23467888775544 445666666432 33333 45432 22334443333333 47888999999999997
Q ss_pred cE
Q 022909 227 SR 228 (290)
Q Consensus 227 ~~ 228 (290)
.+
T Consensus 148 ~~ 149 (152)
T d1yqga2 148 TV 149 (152)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=7.9e-16 Score=124.50 Aligned_cols=155 Identities=12% Similarity=0.087 Sum_probs=110.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------C------------------CCccCCCH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L------------------GAKYQPSP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~------------------g~~~~~~~ 121 (290)
-++|+|||+|.||+.+|..++..|++|++||++++..+...+ . .+....++
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~ 83 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 83 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchh
Confidence 589999999999999999999999999999999875443211 1 13356688
Q ss_pred HHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCC
Q 022909 122 DEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDG 201 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~ 201 (290)
.++++++|+|+.++|.+.+.+.-++ +++-+.+++++++...+++-+. ..+.+.+.+. -+++....+.++. ..
T Consensus 84 ~~a~~~ad~ViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~p-~r~ig~HffnP~~---~~ 155 (192)
T d1f0ya2 84 ASVVHSTDLVVEAIVENLKVKNELF--KRLDKFAAEHTIFASNTSSLQI--TSIANATTRQ-DRFAGLHFFNPVP---VM 155 (192)
T ss_dssp HHHTTSCSEEEECCCSCHHHHHHHH--HHHTTTSCTTCEEEECCSSSCH--HHHHTTSSCG-GGEEEEEECSSTT---TC
T ss_pred HhhhcccceehhhcccchhHHHHHH--HHHhhhcccCceeeccCccccc--chhhhhccCH-hHEEeeccccccC---cc
Confidence 8899999999999999988887663 4566778888888655544443 3455544432 2344422222221 12
Q ss_pred ceEEEecC---CHHHHHHHHHHHHHhCCcEEEeCC
Q 022909 202 QLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD 233 (290)
Q Consensus 202 ~~~~~~~~---~~~~~~~v~~ll~~~G~~~~~~~~ 233 (290)
+++-++.+ +++.++.+.++++.+|+.++.+.|
T Consensus 156 ~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D 190 (192)
T d1f0ya2 156 KLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD 190 (192)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence 34444443 679999999999999999998876
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.52 E-value=2.3e-15 Score=121.37 Aligned_cols=150 Identities=11% Similarity=0.133 Sum_probs=108.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------------CCccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivv~~~p 136 (290)
++||+|||+|.+|.++|..|...|++|.+|+|+++..+.+.+. .+....+++++++++|+|++++|
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP 86 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP 86 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC
T ss_pred eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc
Confidence 4789999999999999999999999999999998877766542 23456788999999999999998
Q ss_pred ChhHHHHHhcccccccc-----cCCCCCEEEEecCCCh-h----HHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEE
Q 022909 137 DPESAMDVACGKHGAAS-----GMGPGKGYVDVSTVDG-D----TSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~-----~~~~~~~lin~s~~~~-~----~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 206 (290)
. ..++.++ +++.+ ..+++..+|+++-|-- . ..+.+.+.+....+.++..|.+..+...+....+++
T Consensus 87 s-~~~~~~~---~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~~~~pt~~vi 162 (189)
T d1n1ea2 87 T-QFLRGFF---EKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSI 162 (189)
T ss_dssp H-HHHHHHH---HHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEE
T ss_pred H-HHHHHHH---HHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHHcCCCcEEEE
Confidence 5 5666666 22222 2346677888764431 1 122333444444566788888877766666666677
Q ss_pred ecCCHHHHHHHHHHHHHh
Q 022909 207 AAGDKSLYNTVAPLLDIM 224 (290)
Q Consensus 207 ~~~~~~~~~~v~~ll~~~ 224 (290)
.+.+.+..+.++++|+.-
T Consensus 163 As~~~~~a~~i~~lfst~ 180 (189)
T d1n1ea2 163 ASADINVARRLQRIMSTG 180 (189)
T ss_dssp ECSSHHHHHHHHHHHSCT
T ss_pred EeCCHHHHHHHHHHhCCC
Confidence 777888889999999753
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.50 E-value=2.7e-13 Score=110.29 Aligned_cols=159 Identities=16% Similarity=0.074 Sum_probs=113.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------------------CCccCCCHHHHhhcCCeE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDVT 131 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDiv 131 (290)
|||+|||+|.+|..+|..|+..|++|++||.++++.+.+.+. .....++..++++++|++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i 80 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence 689999999999999999999999999999998877665431 223557888999999999
Q ss_pred EEEeCChh---------HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc--------CCcEEeCccCCC
Q 022909 132 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--------GASFLEAPVSGS 194 (290)
Q Consensus 132 v~~~p~~~---------~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~--------~~~~~~~p~~~~ 194 (290)
++|+|.+. ....++..-.......+++.++|..|+..+...+.+...+.+. .+.+..+|.+-.
T Consensus 81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~ 160 (202)
T d1mv8a2 81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR 160 (202)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhc
Confidence 99999752 1222221112345567788999999999999988876654321 245666887665
Q ss_pred Cccc----cCCceEEEecCCHHHHHHHHHHHHHhCCcEEE
Q 022909 195 KKPA----EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 195 ~~~~----~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 230 (290)
+..+ ...+..++.+.+++..+.++++++.+...++.
T Consensus 161 ~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~ii~ 200 (202)
T d1mv8a2 161 ESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR 200 (202)
T ss_dssp TTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE
T ss_pred ccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEe
Confidence 5332 11222334445778889999999998765543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.49 E-value=3.1e-14 Score=114.46 Aligned_cols=154 Identities=13% Similarity=0.119 Sum_probs=108.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------CC-------------CccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 126 (290)
-++|+|||+|.||+.+|..++..|++|.+||++++..+...+ .+ +....+.+ .+.
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 82 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYG-DFG 82 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSST-TGG
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccc-ccc
Confidence 478999999999999999999999999999999876443211 11 22333444 478
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEE
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 206 (290)
++|+|+.++|.+.+.+.-++ +++-+..+++++|...+++-+. ..+.+.+.+. -+++....+.++. ..+++-+
T Consensus 83 ~adlViEav~E~l~~K~~lf--~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~~p-~r~~g~Hf~nP~~---~~~lVEi 154 (186)
T d1wdka3 83 NVDLVVEAVVENPKVKQAVL--AEVENHVREDAILASNTSTISI--SLLAKALKRP-ENFVGMHFFNPVH---MMPLVEV 154 (186)
T ss_dssp GCSEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCH--HHHGGGCSCG-GGEEEEECCSSTT---TCCEEEE
T ss_pred ccceeeeeecchHHHHHHHH--HHHHhhcCCCeeEEeccccccH--HHHHHhccCc-hheEeeccccCcc---cCCeEEE
Confidence 99999999999988887663 4566778889988766555444 3455554432 3455544443332 1233433
Q ss_pred ec---CCHHHHHHHHHHHHHhCCcEEEeCC
Q 022909 207 AA---GDKSLYNTVAPLLDIMGKSRFYLGD 233 (290)
Q Consensus 207 ~~---~~~~~~~~v~~ll~~~G~~~~~~~~ 233 (290)
+. .+++.++.+.++++.+|+.++.+.+
T Consensus 155 v~~~~T~~~~~~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 155 IRGEKSSDLAVATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 33 4678999999999999999998865
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.44 E-value=2.2e-14 Score=118.94 Aligned_cols=155 Identities=12% Similarity=0.084 Sum_probs=123.9
Q ss_pred CeEEEEcccH--hHHHHHH------HHHHCCCeEEEEeCCccch-hhHHh------------------------------
Q 022909 72 GRIGFLGMGI--MGTPMAQ------NLLKAGCDVTVWNRTKSKC-DPLIS------------------------------ 112 (290)
Q Consensus 72 ~~IgiiG~G~--iG~~la~------~l~~~g~~V~~~d~~~~~~-~~~~~------------------------------ 112 (290)
.++.++|.|- ||..+++ .++..|+.|++.|-++++. +.+.+
T Consensus 41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~ 120 (242)
T d2b0ja2 41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH 120 (242)
T ss_dssp CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence 6688999886 8877877 5788899999998886542 11111
Q ss_pred ------CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcE
Q 022909 113 ------LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 113 ------~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~ 186 (290)
.|+..++|..|+++++|+|++++|.++.+..++ +++.+.++++++++|+|+.++.....+.+.+.++++++
T Consensus 121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi---~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~v 197 (242)
T d2b0ja2 121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNI 197 (242)
T ss_dssp SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH---HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEE
T ss_pred cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH---HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEE
Confidence 145667899999999999999999888888888 67889999999999999999999999999999889999
Q ss_pred Ee-CccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEe
Q 022909 187 LE-APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 187 ~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 231 (290)
++ +|..+++ .....+++...++++.++++.++|+.+|+.++.+
T Consensus 198 i~~hp~a~pe--~~g~~li~~~~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 198 TSYHPGCVPE--MKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp EECBCSSCTT--TCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred ECCCccCcCc--cccceEEecCCCCHHHHHHHHHHHHHHCCCeEeC
Confidence 88 4554432 2234445556678899999999999999988765
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.42 E-value=6.1e-14 Score=112.13 Aligned_cols=153 Identities=11% Similarity=0.107 Sum_probs=105.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc--chhhHHhCC-------------CccCCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS--KCDPLISLG-------------AKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~--~~~~~~~~g-------------~~~~~~~~~~~~~aDivv~~~p 136 (290)
|+|+|||+|.+|.++|..|...|++|.+|.|..+ ..+.+.+.+ +...++++++++++|+|++++|
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp 80 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence 7899999999999999999999999999998543 233333211 2235678899999999999998
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEecCCChhH-------HHHHHHHHHH--cCCcEEeCccCCCCccccCCceEEEe
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-------SKLINGHIKA--TGASFLEAPVSGSKKPAEDGQLIFLA 207 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~-------~~~l~~~l~~--~~~~~~~~p~~~~~~~~~~~~~~~~~ 207 (290)
. ..++.++ +++.+.+++..+ |.++.+.... .+.+.+.... ..+.++..|.+..+...+....++++
T Consensus 81 s-~~~~~~~---~~l~~~l~~~~i-i~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~via 155 (180)
T d1txga2 81 T-DGVLPVM---SRILPYLKDQYI-VLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFS 155 (180)
T ss_dssp G-GGHHHHH---HHHTTTCCSCEE-EECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEE
T ss_pred h-hhhHHHH---Hhhcccccccee-cccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEE
Confidence 5 6778887 456666766544 4454443211 1222221111 12446778888777665666666777
Q ss_pred cCCHHHHHHHHHHHHHhCCcEE
Q 022909 208 AGDKSLYNTVAPLLDIMGKSRF 229 (290)
Q Consensus 208 ~~~~~~~~~v~~ll~~~G~~~~ 229 (290)
+.+.+..+.++++|+.-.++++
T Consensus 156 s~~~~~a~~i~~~f~~~~frvy 177 (180)
T d1txga2 156 SPSESSANKMKEIFETEYFGVE 177 (180)
T ss_dssp CSCHHHHHHHHHHHCBTTEEEE
T ss_pred cCCHHHHHHHHHHHCCCCEEEE
Confidence 7788888999999976555554
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.39 E-value=1.2e-12 Score=104.43 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=83.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC---------------CccCCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG---------------AKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g---------------~~~~~~~~~~~~~aDivv~~~p 136 (290)
+||+|||+|+||..+|..|...|++|.+|+|++++.+.+.+.+ ....+++.|.++++|+|++++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v~ 81 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 81 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEEc
Confidence 8999999999999999999999999999999988877766532 1234678999999999999997
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcC
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG 183 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~ 183 (290)
. ..++.++ +++.+.++++++++.. .+.......+.+.++..+
T Consensus 82 ~-~~~~~~~---~~i~~~l~~~~~iv~~-~g~~~~~~~~~~~~~~~~ 123 (184)
T d1bg6a2 82 A-IHHASIA---ANIASYISEGQLIILN-PGATGGALEFRKILRENG 123 (184)
T ss_dssp G-GGHHHHH---HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHHTT
T ss_pred h-hHHHHHH---HHhhhccCCCCEEEEe-CCCCccHHHHHHHHHHhc
Confidence 6 5567776 5577889999987755 444344445566666543
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=8.8e-13 Score=102.07 Aligned_cols=100 Identities=16% Similarity=0.085 Sum_probs=80.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+|+++|+|+|.+|+.+|++++.+|++|.+++++|.+.-+..-.|.... ++++++..+|+++.++.. ++++ +.+
T Consensus 24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTGn----~~vI--~~e 96 (163)
T d1li4a1 24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTGC----IDII--LGR 96 (163)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSC----SCSB--CHH
T ss_pred CCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhhhhccEEEecCCC----ccch--hHH
Confidence 899999999999999999999999999999999866544444666655 899999999999887643 4556 567
Q ss_pred ccccCCCCCEEEEecCCC-hhHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVD-GDTSKLING 177 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~-~~~~~~l~~ 177 (290)
-++.||+++++.|++... -++..+|.+
T Consensus 97 h~~~MKdgaIL~N~Ghfd~EId~~~L~~ 124 (163)
T d1li4a1 97 HFEQMKDDAIVCNIGHFDVEIDVKWLNE 124 (163)
T ss_dssp HHTTCCTTEEEEECSSSTTSBCHHHHHH
T ss_pred HHHhccCCeEEEEeccccceecHHHHhh
Confidence 799999999999997544 345555544
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=99.12 E-value=7.6e-11 Score=90.53 Aligned_cols=93 Identities=16% Similarity=0.111 Sum_probs=78.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+|++.|+|+|.+|+.+|++++..|.+|++++.+|-++-++.-.|.+. .+++++++.+|++|.++... +++ ..+
T Consensus 23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~----~vI--~~~ 95 (163)
T d1v8ba1 23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNV----DVI--KLE 95 (163)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSS----SSB--CHH
T ss_pred CCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCC----ccc--cHH
Confidence 89999999999999999999999999999999986654444467776 48999999999999988653 345 455
Q ss_pred ccccCCCCCEEEEecCCChh
Q 022909 151 AASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~ 170 (290)
.++.||+++++.|++....+
T Consensus 96 h~~~MKdgaIl~N~GHfd~E 115 (163)
T d1v8ba1 96 HLLKMKNNAVVGNIGHFDDE 115 (163)
T ss_dssp HHTTCCTTCEEEECSSTTTS
T ss_pred HHHHhhCCeEEEeccccchh
Confidence 68999999999999776544
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=1.5e-10 Score=90.39 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=71.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC-------ccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA-------KYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~-------~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
|||+|||+|.||+.+|..|.+.|++|.+++|++++.......+. ....+..+.+..+|+|+++++. .+++..
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~ 79 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence 78999999999999999999999999999999876554332111 1223455677899999999975 667777
Q ss_pred hcccccccccCCCCCEEEEecCCC
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~ 168 (290)
+ +.+.+.+.+++.++.+..+-
T Consensus 80 ~---~~l~~~~~~~~~Iv~~qNG~ 100 (167)
T d1ks9a2 80 V---KSLASTLPVTTPILLIHNGM 100 (167)
T ss_dssp H---HHHHTTSCTTSCEEEECSSS
T ss_pred H---HhhccccCcccEEeeccCcc
Confidence 6 45667788899888886653
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.98 E-value=9.8e-10 Score=88.25 Aligned_cols=122 Identities=11% Similarity=0.032 Sum_probs=83.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC------------------CCccCCCHHHHhhcCCeEEE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL------------------GAKYQPSPDEVAASCDVTFA 133 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~------------------g~~~~~~~~~~~~~aDivv~ 133 (290)
|||+|||+|.+|..+|..++ .|++|++||.++++.+.+... ......+......++|++++
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence 78999999999999998775 699999999999877765531 11223355566788999999
Q ss_pred EeCChhHHHH------HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 134 MLADPESAMD------VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 134 ~~p~~~~~~~------~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
++|.+..-.. .+....+.....+++.++|..|+..+...+.+.+.+.+. +++.+|.+-.+.
T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~--~~~~~PE~i~~G 146 (196)
T d1dlja2 80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRES 146 (196)
T ss_dssp CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTT
T ss_pred cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchh--hhccchhhcchh
Confidence 9997643111 110001112234577888989999999998887766543 455577665443
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.82 E-value=8.9e-09 Score=79.31 Aligned_cols=88 Identities=25% Similarity=0.292 Sum_probs=72.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|||+|.-|.+.|..|+..|.+|++--|...+ .+...+.|.... +.+|+.+++|+|.+.+|+ +.-..+. .+
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~-~~~eA~~~aDiim~L~PD-~~q~~vy--~~ 91 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPD-EFQGRLY--KE 91 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCH-HHHHHHH--HH
T ss_pred CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc-cHHHHhhhcCeeeeecch-HHHHHHH--HH
Confidence 799999999999999999999999999987776543 344555777765 899999999999999985 4445555 45
Q ss_pred cccccCCCCCEEE
Q 022909 150 GAASGMGPGKGYV 162 (290)
Q Consensus 150 ~~~~~~~~~~~li 162 (290)
++.+.|++|+.+.
T Consensus 92 ~I~p~lk~g~~L~ 104 (182)
T d1np3a2 92 EIEPNLKKGATLA 104 (182)
T ss_dssp HTGGGCCTTCEEE
T ss_pred hhhhhcCCCcEEE
Confidence 6889999999875
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.77 E-value=4.1e-09 Score=83.63 Aligned_cols=173 Identities=13% Similarity=0.140 Sum_probs=89.3
Q ss_pred CeEEEE-cccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-------CCccCCCHHHHhhcCCeEEEEeCChhHHHH
Q 022909 72 GRIGFL-GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------GAKYQPSPDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 72 ~~Igii-G~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-------g~~~~~~~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
|||+|| |+|.||+++|+.|+..|++|.+++|++++.+.+.+. ......+........+......+.......
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDT 80 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeeeccchH
Confidence 689999 799999999999999999999999999887666542 111222344455556666655543222221
Q ss_pred Hhcc--cccccccCCCCCEEEEec-----CCChhHHHHHHHHHHHcC----CcEEeCccCCCCccccCCceEEEecCCHH
Q 022909 144 VACG--KHGAASGMGPGKGYVDVS-----TVDGDTSKLINGHIKATG----ASFLEAPVSGSKKPAEDGQLIFLAAGDKS 212 (290)
Q Consensus 144 ~~~~--~~~~~~~~~~~~~lin~s-----~~~~~~~~~l~~~l~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 212 (290)
.... ...............+.. .............+.... ......+.+..+.. .........+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~ 159 (212)
T d1jaya_ 81 ARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFANLDE-KFDWDVPVCGDDDE 159 (212)
T ss_dssp HHHTHHHHTTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCSCEEECCTTCCHHHHHCTTC-CCCEEEEEEESCHH
T ss_pred HHHhhhhhccccccccccccccccccccccccchhhhhhhhhhhhhcccccceeecHHHhcCccc-ccCccceEEeCCHH
Confidence 1100 000000000000000000 111112223333333221 11122233322222 22333445666666
Q ss_pred HHHHHHH-HHHHhCCcEEEeCCcchHHHHHHHHH
Q 022909 213 LYNTVAP-LLDIMGKSRFYLGDVGNGAAMKLVVN 245 (290)
Q Consensus 213 ~~~~v~~-ll~~~G~~~~~~~~~g~a~~~k~~~n 245 (290)
..+.+.+ +.+..|.++++.+....+...+.+..
T Consensus 160 a~~~~~~~~~~~~g~~~~~~G~l~~a~~~e~~~~ 193 (212)
T d1jaya_ 160 SKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTP 193 (212)
T ss_dssp HHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHH
T ss_pred HHHHHHHHHhhCCCeEEEEeChHHHHHHHHhHHH
Confidence 6666555 55567998888888777766654433
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=3.8e-08 Score=76.40 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=78.0
Q ss_pred CeEEEEcccHhHHH-HHHHHHHC-CCeE-EEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 72 GRIGFLGMGIMGTP-MAQNLLKA-GCDV-TVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 72 ~~IgiiG~G~iG~~-la~~l~~~-g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
+||||||+|.+|+. ....+... +.++ .++|+++++.+.+.+ .++...++.++++++.|+|++++|.......+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~-- 79 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS-- 79 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH--
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhcccccc--
Confidence 68999999999986 56667654 5665 488999988777654 678888899999999999999998765544433
Q ss_pred cccccccCCCCCEEE-Ee-cCCChhHHHHHHHHHHHcCCcE
Q 022909 148 KHGAASGMGPGKGYV-DV-STVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 148 ~~~~~~~~~~~~~li-n~-s~~~~~~~~~l~~~l~~~~~~~ 186 (290)
..++.|..++ .- -.....+.+++.+..++.+..+
T Consensus 80 -----~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~ 115 (164)
T d1tlta1 80 -----TLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL 115 (164)
T ss_dssp -----HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred -----ccccccceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence 3345555443 21 1345667778888888777554
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.67 E-value=3.8e-08 Score=73.62 Aligned_cols=73 Identities=12% Similarity=0.233 Sum_probs=57.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc-------CCCHHHH-hhcCCeEEEEeCChhHHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEV-AASCDVTFAMLADPESAMD 143 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~-~~~aDivv~~~p~~~~~~~ 143 (290)
|++.|+|+|++|+.+++.|...|++|.++|.++++.+++.+.+... .+.++++ ++++|.+++++|.+.....
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~ 80 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST 80 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence 5689999999999999999999999999999999888877654321 1233444 6789999999987655444
Q ss_pred H
Q 022909 144 V 144 (290)
Q Consensus 144 ~ 144 (290)
+
T Consensus 81 ~ 81 (134)
T d2hmva1 81 L 81 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.65 E-value=2.5e-08 Score=78.03 Aligned_cols=110 Identities=22% Similarity=0.220 Sum_probs=77.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC---------ccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA---------KYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~---------~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.|+|.|||+|.||+.+|+.|...|++|+++||+.++.+.+.+..- ......++.+...|+++.++|.....
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~ 81 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA 81 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhhh
Confidence 589999999999999999999999999999999999888766311 11123456677889999888764432
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
... ....+.+..+++.+.... ....+.+.....+..++.
T Consensus 82 -~~~------~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 120 (182)
T d1e5qa1 82 -TVI------KSAIRQKKHVVTTSYVSP-AMMELDQAAKDAGITVMN 120 (182)
T ss_dssp -HHH------HHHHHHTCEEECSSCCCH-HHHHTHHHHHHTTCEEEC
T ss_pred -HHH------HHHHhhccceeecccCcH-HHHHHHHHhccccceeeh
Confidence 222 233445677777765443 455666666666555543
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.65 E-value=1.5e-08 Score=78.37 Aligned_cols=68 Identities=29% Similarity=0.358 Sum_probs=57.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh-CCCc--cCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-LGAK--YQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~-~g~~--~~~~~~~~~~~aDivv~~~p~~ 138 (290)
+++|.|||+|.||+.+++.|...|. ++++++|+.++.+.+.+ .+.. ..+++.+.+.++|+||.|++.+
T Consensus 24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~ 95 (159)
T d1gpja2 24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP 95 (159)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS
T ss_pred cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCC
Confidence 7999999999999999999999998 69999999888776665 3443 3457777888999999998754
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.60 E-value=1.6e-08 Score=78.01 Aligned_cols=94 Identities=22% Similarity=0.342 Sum_probs=74.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC---CCcc----CCCHHHHhhcCCeEEEEeCCh-hHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL---GAKY----QPSPDEVAASCDVTFAMLADP-ESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~---g~~~----~~~~~~~~~~aDivv~~~p~~-~~~~ 142 (290)
.-+|.|||.|..|..-++.++..|.+|.++|.++++.++++.. .+.. ...+++.++++|+||-++--+ ....
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~aP 111 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAP 111 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCC
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcccC
Confidence 5899999999999999999999999999999999888776652 1221 124677889999999877533 3345
Q ss_pred HHhcccccccccCCCCCEEEEecC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++ .++.++.||||.++||++-
T Consensus 112 ~lI--t~~mv~~Mk~GSVIVDvai 133 (168)
T d1pjca1 112 ILV--PASLVEQMRTGSVIVDVAV 133 (168)
T ss_dssp CCB--CHHHHTTSCTTCEEEETTC
T ss_pred eee--cHHHHhhcCCCcEEEEeec
Confidence 666 5678899999999999964
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=98.57 E-value=7.6e-08 Score=75.14 Aligned_cols=93 Identities=19% Similarity=0.293 Sum_probs=72.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCC-----------------------------CH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP-----------------------------SP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~-----------------------------~~ 121 (290)
.-+|.|||.|..|..-++.....|.+|.++|.++++.+++++.+..+.+ .+
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l 108 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAV 108 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999998888875433221 12
Q ss_pred HHHhhcCCeEEEEeCChh-HHHHHhcccccccccCCCCCEEEEec
Q 022909 122 DEVAASCDVTFAMLADPE-SAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~~~-~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
.+.++++|+||.++--+. ....++ .++..+.||||.++||++
T Consensus 109 ~~~l~~aDlVI~talipG~~aP~li--t~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 109 LKELVKTDIAITTALIPGKPAPVLI--TEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp HHHHTTCSEEEECCCCTTSCCCCCS--CHHHHTTSCTTCEEEETT
T ss_pred HHHHHhhhhheeeeecCCcccceee--hHHHHHhcCCCcEEEEEe
Confidence 344778999997664332 233455 567789999999999996
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.51 E-value=1.1e-07 Score=74.18 Aligned_cols=105 Identities=17% Similarity=0.195 Sum_probs=71.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+.||||||+|+||+.+++.+... ++++. +++++++... ..+.....+.+++..+.|+|++++|........
T Consensus 3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a---- 75 (170)
T d1f06a1 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDIPEQ---- 75 (170)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHHHHH----
T ss_pred cceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---ccccccchhhhhhccccceEEEeCCCcccHHHH----
Confidence 57899999999999999999875 56654 7788765433 234455567778888999999999886654433
Q ss_pred ccccccCCCCCEEEEecCC---ChhHHHHHHHHHHHcCCc
Q 022909 149 HGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGAS 185 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~---~~~~~~~l~~~l~~~~~~ 185 (290)
...++.|..+|.+.-. .+...+.+.++.++++..
T Consensus 76 ---~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~~ 112 (170)
T d1f06a1 76 ---APKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNV 112 (170)
T ss_dssp ---HHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred ---HHHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCce
Confidence 3456778877654321 123344566666665544
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.51 E-value=1.1e-07 Score=75.60 Aligned_cols=88 Identities=20% Similarity=0.170 Sum_probs=67.4
Q ss_pred CeEEEEcccHhHHHHHHHHHHC------CCeEEEEeCCc-cchhhHHhCCCcc----CCCHHHHhhcCCeEEEEeCChhH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA------GCDVTVWNRTK-SKCDPLISLGAKY----QPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~------g~~V~~~d~~~-~~~~~~~~~g~~~----~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
|+|+|||+|.-|.+.|..|+.. |.+|.+--|.. ...+.+.+.|... +.+.+|+++++|+|.+.+|+ +.
T Consensus 45 KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPD-e~ 123 (226)
T d1qmga2 45 KQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISD-SA 123 (226)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCH-HH
T ss_pred CEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecch-HH
Confidence 8999999999999999999994 46677665543 4445566677652 33688999999999999986 44
Q ss_pred HHHHhcccccccccCCCCCEEEE
Q 022909 141 AMDVACGKHGAASGMGPGKGYVD 163 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin 163 (290)
-.++. +++.+.|++|+.+.-
T Consensus 124 Q~~vy---~~I~p~Lk~G~~L~F 143 (226)
T d1qmga2 124 QADNY---EKVFSHMKPNSILGL 143 (226)
T ss_dssp HHHHH---HHHHHHSCTTCEEEE
T ss_pred HHHHH---HHHHHhcCCCceeee
Confidence 45566 357899999998763
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.49 E-value=4.3e-07 Score=71.55 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=76.1
Q ss_pred CeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-CC----CccCCCHHHHhh--cCCeEEEEeCChhHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LG----AKYQPSPDEVAA--SCDVTFAMLADPESAM 142 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g----~~~~~~~~~~~~--~aDivv~~~p~~~~~~ 142 (290)
.||||||+|.+|+..++.+... +++|. ++|+++++.+.+.+ .+ ...+++++++++ +.|+|++++|......
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~ 81 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE 81 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence 6899999999999999999876 56766 77999887766554 33 345679999986 4799999998876655
Q ss_pred HHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcE
Q 022909 143 DVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~ 186 (290)
... ..++.|..++--- .....+.+++.+..++.+..+
T Consensus 82 ~~~-------~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~ 120 (184)
T d1ydwa1 82 WAI-------KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI 120 (184)
T ss_dssp HHH-------HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred hhh-------hhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence 443 3345555543211 234556677778777776655
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.49 E-value=2.5e-07 Score=70.85 Aligned_cols=69 Identities=13% Similarity=0.182 Sum_probs=52.0
Q ss_pred cCCCCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CC----CccCCCHHHHhhcCCeEEEE
Q 022909 68 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 68 ~~~~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivv~~ 134 (290)
+++.+||+|||+|.+|+.+|..+...+. ++.++|.++++.+..+. .+ .....+.++.++++|+|+++
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvit 83 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVT 83 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEEC
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEe
Confidence 3447899999999999999998887775 89999998876443221 11 12235667889999999998
Q ss_pred eC
Q 022909 135 LA 136 (290)
Q Consensus 135 ~p 136 (290)
..
T Consensus 84 ag 85 (154)
T d1pzga1 84 AG 85 (154)
T ss_dssp CS
T ss_pred cc
Confidence 74
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=98.48 E-value=1.7e-07 Score=74.93 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=77.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhh-cCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++||+|-|+|++|+.+|+.|...|.+|+++|.++++.......+.... +.++++. +|||++-|--. +.+ ++
T Consensus 27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~~~~DI~iPcA~~-----~~I--~~ 98 (201)
T d1c1da1 27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMG-----GVI--TT 98 (201)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCS-----CCB--CH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-Cccccccccceeeeccccc-----ccc--cH
Confidence 899999999999999999999999999999999888777777777766 5666666 69988865422 233 33
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
+..+.++- .+++..+.++. ..++..+.|.++|+.|+
T Consensus 99 ~~a~~i~a-k~i~e~AN~p~-~~~~~~~~L~~rgI~~i 134 (201)
T d1c1da1 99 EVARTLDC-SVVAGAANNVI-ADEAASDILHARGILYA 134 (201)
T ss_dssp HHHHHCCC-SEECCSCTTCB-CSHHHHHHHHHTTCEEC
T ss_pred HHHhhhhh-heeeccCCCCc-chhhHHHHhcccceEEE
Confidence 33444542 35554444443 44456778889998775
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.46 E-value=2.2e-07 Score=70.49 Aligned_cols=95 Identities=11% Similarity=0.193 Sum_probs=60.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC--CeEEEEeCCccchhhHH----h----C--CCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLI----S----L--GAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~~~~~~~----~----~--g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
.+||+|||+|.+|..+|..|...| .+|.++|+++++.+..+ . . ......+.++ +++||+|+++...+
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~-~~~adivvitag~~ 83 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD-CKDADLVVITAGAP 83 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG-GTTCSEEEECCCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHH-hccccEEEEecccc
Confidence 789999999999999999999877 48999999886543221 1 0 1123345554 68999999986543
Q ss_pred hH---H--------HHHhcccccccccCCCCCEEEEecC
Q 022909 139 ES---A--------MDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ~~---~--------~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.. + ..++..-.+.+....|++++|++|.
T Consensus 84 ~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN 122 (146)
T d1ez4a1 84 QKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (146)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence 21 1 1111100111333467888888864
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.44 E-value=1.1e-06 Score=65.20 Aligned_cols=87 Identities=20% Similarity=0.225 Sum_probs=60.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCcc----CCCHHHH----hhcCCeEEEEeCChhHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY----QPSPDEV----AASCDVTFAMLADPESAM 142 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~----~~~~~~~----~~~aDivv~~~p~~~~~~ 142 (290)
|+|.|+|+|++|+.+++.|...|++|.+.|.++++.+.+.+ .+... ..+.+-+ ++++|.++.+++.++. .
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~-N 79 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV-N 79 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH-H
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH-H
Confidence 78999999999999999999999999999999998887765 34432 1222222 4678988888766433 2
Q ss_pred HHhcccccccccCCCCCEEE
Q 022909 143 DVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~li 162 (290)
-++ ......+.+..++.
T Consensus 80 ~~~---~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 80 LMS---SLLAKSYGINKTIA 96 (132)
T ss_dssp HHH---HHHHHHTTCCCEEE
T ss_pred HHH---HHHHHHcCCceEEE
Confidence 222 12234455666654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.43 E-value=4.9e-07 Score=70.09 Aligned_cols=108 Identities=12% Similarity=0.100 Sum_probs=74.8
Q ss_pred CeEEEEcccHhHHH-HHHHHHHC-CCeEEEEeCCccchhhHHh-CCC-ccCCCHHHHhh-cCCeEEEEeCChhHHHHHhc
Q 022909 72 GRIGFLGMGIMGTP-MAQNLLKA-GCDVTVWNRTKSKCDPLIS-LGA-KYQPSPDEVAA-SCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 72 ~~IgiiG~G~iG~~-la~~l~~~-g~~V~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~-~aDivv~~~p~~~~~~~~~~ 146 (290)
+||||||+|.+|+. ....+... +.++.++|+++++.+.+.+ .+. ..+++.+++++ +.|+|++++|.......+.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~- 80 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA- 80 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH-
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccccccccccc-
Confidence 78999999999976 56677665 4588899999888777765 444 34678888876 5799999998766655443
Q ss_pred ccccccccCCCCCE-EEEe-cCCChhHHHHHHHHHHHcCCcE
Q 022909 147 GKHGAASGMGPGKG-YVDV-STVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 147 ~~~~~~~~~~~~~~-lin~-s~~~~~~~~~l~~~l~~~~~~~ 186 (290)
..++.|.. ++.- -.....+.+++.+..++.+..+
T Consensus 81 ------~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~ 116 (167)
T d1xeaa1 81 ------FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL 116 (167)
T ss_dssp ------HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred ------cccccccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 22334443 3322 1344566778888888777654
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.43 E-value=9.2e-07 Score=69.46 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=74.4
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHCC--CeEE-EEeCCccchhhHHh-CCC-ccCCCHHHHhhc--CCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKAG--CDVT-VWNRTKSKCDPLIS-LGA-KYQPSPDEVAAS--CDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~g--~~V~-~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~~--aDivv~~~p~~~~~~ 142 (290)
..||||||+|.+|+. ....+...+ .+|. ++|+++++.+.+.+ .+. ..++++++++++ .|+|++++|...+.+
T Consensus 3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~ 82 (181)
T d1zh8a1 3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP 82 (181)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccccc
Confidence 468999999999987 577777654 3554 78999888777655 343 456899999874 788999998765544
Q ss_pred HHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcE
Q 022909 143 DVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~ 186 (290)
.+. ..++.|..++--= .....+.+++.+..++.+..+
T Consensus 83 ~~~-------~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~ 121 (181)
T d1zh8a1 83 FIE-------KALRKGVHVICEKPISTDVETGKKVVELSEKSEKTV 121 (181)
T ss_dssp HHH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCE
T ss_pred ccc-------cccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCeE
Confidence 433 3344555443221 334566677888887776543
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=98.38 E-value=5.2e-07 Score=69.23 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=62.8
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHCCC-eEE-EEeCCccch--hhHHhCCCccCC-CHHHHh-----hcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKAGC-DVT-VWNRTKSKC--DPLISLGAKYQP-SPDEVA-----ASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~g~-~V~-~~d~~~~~~--~~~~~~g~~~~~-~~~~~~-----~~aDivv~~~p~~~ 139 (290)
+.||||||+|.||+. +.+.++.+.. ++. +.+|+++.. ...++.++.... +.++++ .+.|+|++++|...
T Consensus 4 kirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~ 83 (157)
T d1nvmb1 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA 83 (157)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchh
Confidence 679999999999986 5677766543 554 568876533 234456665443 355544 35799999998766
Q ss_pred HHHHHhcccccccccCCCCCEEEEecC
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+.++.. .....+.|.++||.|.
T Consensus 84 h~~~~~-----~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 84 HVQNEA-----LLRQAKPGIRLIDLTP 105 (157)
T ss_dssp HHHHHH-----HHHHHCTTCEEEECST
T ss_pred HHHhHH-----HHHHHHcCCEEEEccc
Confidence 666543 2455789999999986
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.35 E-value=5.7e-07 Score=68.34 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=49.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHH----h------CCCccCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----S------LGAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~----~------~g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
++||+|||+|.+|..+|..+...|. ++.++|+++++.+..+ + .......+..+.+++||+|+++...
T Consensus 6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~ 84 (148)
T d1ldna1 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA 84 (148)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEeccc
Confidence 6899999999999999999988775 7999999887633211 1 1222223334668899999997654
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.30 E-value=1.6e-06 Score=70.30 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=74.8
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHC-CCeEE-EEeCCccchhhHHh-CCC-----ccCCCHHHHhhc--CCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGA-----KYQPSPDEVAAS--CDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~-----~~~~~~~~~~~~--aDivv~~~p~~~ 139 (290)
.-+|||||+|.+|+. +...+... +.+|. ++|+++++.+.+.+ .++ ..++|+++++++ .|+|++++|...
T Consensus 33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~ 112 (221)
T d1h6da1 33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL 112 (221)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhh
Confidence 468999999999974 56666554 56665 88999988777655 444 245789999874 789999998765
Q ss_pred HHHHHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcE
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~ 186 (290)
+...++ ..++.|..++--- .....+..++.+..++.+..+
T Consensus 113 H~~~~~-------~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~ 154 (221)
T d1h6da1 113 HAEFAI-------RAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKL 154 (221)
T ss_dssp HHHHHH-------HHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred hhhHHH-------HhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence 544433 3344555543221 345666778888887776654
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.27 E-value=1.3e-06 Score=66.19 Aligned_cols=65 Identities=23% Similarity=0.393 Sum_probs=47.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHH----h----CC--Cc-cCCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----S----LG--AK-YQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~----~----~g--~~-~~~~~~~~~~~aDivv~~~p~ 137 (290)
+||+|||+|++|..+|-.+...|. ++.++|+++++.+... + .+ .. ...+. +.+++||+|+++...
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-~~l~~adiVVitaG~ 79 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN 79 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH-HHhccccEEEEeccc
Confidence 799999999999999999988774 8999999887643221 1 11 11 22344 457999999998653
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.26 E-value=9.6e-07 Score=66.41 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=59.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh---------CCCccCCCHHHHhhcCCeEEEEeCCh--
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS---------LGAKYQPSPDEVAASCDVTFAMLADP-- 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~---------~g~~~~~~~~~~~~~aDivv~~~p~~-- 138 (290)
|||+|||+|.+|..+|..+...+. ++.++|+++++.+.... .......+..+.+++||+|+++...+
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 80 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK 80 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence 689999999999999998887764 89999998766443211 01122223345689999999986432
Q ss_pred -hH--------HHHHhcccccccccCCCCCEEEEecC
Q 022909 139 -ES--------AMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 -~~--------~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.. ...++..-.+.+....|+++++++|.
T Consensus 81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN 117 (140)
T d1a5za1 81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN 117 (140)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence 11 11222110112333468889998854
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=4.2e-06 Score=64.89 Aligned_cols=108 Identities=26% Similarity=0.256 Sum_probs=76.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC----C-CccCCCHHH-HhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----G-AKYQPSPDE-VAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~----g-~~~~~~~~~-~~~~aDivv~~~p~~~~~~~~ 144 (290)
+++|.|+|+|..+++++..|...|.+|.+++|+.++.+.+.+. + +... +.++ ...++|+||.++|....-. .
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~-~~~~~~~~~~dliIN~Tp~G~~~~-~ 95 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQAL-SMDELEGHEFDLIINATSSGISGD-I 95 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEEC-CSGGGTTCCCSEEEECCSCGGGTC-C
T ss_pred CCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccc-ccccccccccceeecccccCcccC-C
Confidence 7999999999999999999999999999999999887776552 1 2222 3333 2456899999998754321 1
Q ss_pred hcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 185 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~ 185 (290)
..-..+.++++.+++|+.-.+..+ .+.+..++.|..
T Consensus 96 ---~~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~~ 131 (170)
T d1nyta1 96 ---PAIPSSLIHPGIYCYDMFYQKGKT--PFLAWCEQRGSK 131 (170)
T ss_dssp ---CCCCGGGCCTTCEEEESCCCSSCC--HHHHHHHHTTCC
T ss_pred ---CCCcHHHhccCcEEEEeecCCCCC--HHHHHHHHcCCC
Confidence 111245578899999996554433 455566666653
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.22 E-value=1.6e-06 Score=65.26 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=48.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh----------CCCcc-CCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS----------LGAKY-QPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~----------~g~~~-~~~~~~~~~~aDivv~~~p 136 (290)
|||+|||+|.+|..++..+...|. ++.++|+++++.+.... ..... .++..+.++++|+|+++.-
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag 78 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAG 78 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEe
Confidence 689999999999999999998874 89999999876443211 11211 1244566899999999864
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=98.21 E-value=7.1e-07 Score=62.20 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=44.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccch--hhHHhCCC-ccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC--DPLISLGA-KYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~--~~~~~~g~-~~~~~~~~~~~~aDivv~~ 134 (290)
+++|.|+|+|..|.++|+.|...|++|+++|.+.... +.+.+... ......++.+.+.|+|++.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S 71 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS 71 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC
Confidence 7999999999999999999999999999999865422 22211111 1111224456677777765
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.1e-06 Score=70.17 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=52.7
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-------cCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivv~~~p~ 137 (290)
++||.|+| .|.+|+.+++.|.+.|++|.++.|++++.......+++ -.++++++++++|+|+.++..
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence 58899999 69999999999999999999999998875544333332 123566778899999988753
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.13 E-value=3.4e-06 Score=63.41 Aligned_cols=94 Identities=10% Similarity=0.076 Sum_probs=60.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhH----Hh----CC----CccCCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----IS----LG----AKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~----~~----~g----~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
|||+|||+|++|..+|-.+...|. ++.++|+++++.+.. .. .. +....+. +.++++|+|+++...
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag~ 79 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL 79 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEeccc
Confidence 789999999999999999987774 799999988764321 11 11 1223344 578999999988753
Q ss_pred hh-----------HHHHHhcccccccccCCCCCEEEEecC
Q 022909 138 PE-----------SAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 138 ~~-----------~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+. ....++..-.+.+....|+++++++|+
T Consensus 80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1ojua1 80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (142)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence 21 111222110112333467889998866
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.12 E-value=4.1e-06 Score=62.98 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=44.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh---CC------CccCCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS---LG------AKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~---~g------~~~~~~~~~~~~~aDivv~~~p 136 (290)
+||+|||+|.+|..+|-.+...+. ++.++|+++++.+.... +. ........+.+++||+|+++..
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag 77 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAG 77 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecc
Confidence 689999999999999999988875 89999998876432221 11 1112223455789999999854
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.12 E-value=1.8e-06 Score=73.95 Aligned_cols=91 Identities=20% Similarity=0.279 Sum_probs=71.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCC-eEEEEeCCccchhhHHh----CCCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLIS----LGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~-~V~~~d~~~~~~~~~~~----~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
.++++|||+|..++..++.+.. +.. +|.+|+|++++.+.+.+ .+.....+.++.+.++|+|+.++|.+ ..+
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~---~P~ 201 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSR---KPV 201 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCS---SCC
T ss_pred ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCc---ccc
Confidence 4789999999999999999875 454 89999999988766544 45555667788899999999888753 344
Q ss_pred hcccccccccCCCCCEEEEecCCCh
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~~ 169 (290)
+ . .+++++|++++.++...+
T Consensus 202 ~--~---~~~l~~G~hv~~iGs~~p 221 (320)
T d1omoa_ 202 V--K---AEWVEEGTHINAIGADGP 221 (320)
T ss_dssp B--C---GGGCCTTCEEEECSCCST
T ss_pred c--c---hhhcCCCCeEeecCCccc
Confidence 4 1 357899999998876544
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=98.12 E-value=3e-06 Score=61.14 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=58.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchh-hHHhC-CCccC--CCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISL-GAKYQ--PSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~-~~~~~-g~~~~--~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
+++|.|||.|.+|..-++.|.++|.+|+++++...... .+.+. ++... .-.++.+.++++|+.+... .++...+
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d-~~~n~~i- 89 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD-DTVNQRV- 89 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC-HHHHHHH-
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCC-HHHHHHH-
Confidence 89999999999999999999999999999998654322 22222 22211 1123346778888877644 3333222
Q ss_pred ccccccccCCCCCEEEEecC
Q 022909 147 GKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~ 166 (290)
....++..++||+..
T Consensus 90 -----~~~a~~~~ilVNv~D 104 (113)
T d1pjqa1 90 -----SDAAESRRIFCNVVD 104 (113)
T ss_dssp -----HHHHHHTTCEEEETT
T ss_pred -----HHHHHHcCCEEEeCC
Confidence 344556677888754
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=98.12 E-value=1.5e-06 Score=74.80 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=71.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCC-eEEEEeCCccchhhHHh-----CCC--ccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLIS-----LGA--KYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~-~V~~~d~~~~~~~~~~~-----~g~--~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.++++|||+|..+...++.+.. ++. +|.+|+|++++.+.+.+ .|+ ..+++++++++.||+|+.+++. ..+
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas-~s~ 206 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD-KAY 206 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC-SSE
T ss_pred CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecccc-CCC
Confidence 4899999999999999988754 564 79999999988766654 233 4578999999999999988854 333
Q ss_pred HHHhcccccccccCCCCCEEEEecCCCh
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~ 169 (290)
..++ . .++++||.+|..++.-.+
T Consensus 207 ~Pv~--~---~~~l~pG~hI~aiGs~~p 229 (340)
T d1x7da_ 207 ATII--T---PDMLEPGMHLNAVGGDCP 229 (340)
T ss_dssp EEEE--C---GGGCCTTCEEEECSCCBT
T ss_pred Cccc--c---hhhcCCCCEEeecccchh
Confidence 4555 2 467899999887765443
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.12 E-value=3.8e-06 Score=64.37 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=48.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHH----hC----C---CccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----SL----G---AKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~----~~----g---~~~~~~~~~~~~~aDivv~~~p 136 (290)
.+||+|||+|++|..+|-.+...|. ++.++|++++..+..+ .. + .....+. +.+++||+|+++..
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~-~~~~~adiVVitAg 97 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY-SVTANSKIVVVTAG 97 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG-GGGTTCSEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch-hhcccccEEEEecC
Confidence 6899999999999999999999886 8999999876643221 10 1 1122344 45789999998764
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=98.09 E-value=1.9e-06 Score=66.77 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=74.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChh--HHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPE--SAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~--~~~~~~~ 146 (290)
+++|.|+|+|..+++++..|...|. +|.+++|++++.+.+.+ .+.....+.. ..++|+||.++|... .....-
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpiGm~~~~~~~~- 93 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD- 93 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS-
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheeccccCCcccccccc-
Confidence 6889999999999999999999997 79999999998877765 3443333322 357999999998421 110100
Q ss_pred ccccc-cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 147 GKHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 147 ~~~~~-~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
-.+ ...++++.+++|+.-.+..+ .+.+..++.|...++
T Consensus 94 --l~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~i~ 132 (167)
T d1npya1 94 --LAFPKAFIDNASVAFDVVAMPVET--PFIRYAQARGKQTIS 132 (167)
T ss_dssp --CSSCHHHHHHCSEEEECCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred --ccccHhhcCCcceEEEEeeccCCC--HHHHHHHHCCCeEEE
Confidence 000 12245678889985544433 356666777766654
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.07 E-value=4.2e-06 Score=62.28 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=50.3
Q ss_pred CcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 233 DVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 233 ~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
+.|++..+|+++|++...+ .+++|++.++++.|+|++++.+++....++||.+.
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~ 55 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALE 55 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhh
Confidence 4689999999999998888 99999999999999999999999999999998763
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.04 E-value=2.6e-06 Score=63.41 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=51.2
Q ss_pred CcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccC
Q 022909 233 DVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDG 287 (290)
Q Consensus 233 ~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~ 287 (290)
+.|+|..+|+++|++.+.+ .+++|++.++++.|+|++++.+++..+..+|+.+..
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~ 56 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDA 56 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhh
Confidence 4689999999999998888 999999999999999999999999999999988754
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=9.3e-06 Score=63.57 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=75.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CCCc----cC---CCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAK----YQ---PSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~----~~---~~~~~~~~~aDivv~~ 134 (290)
+++|.|+|+|..|++++..|...|. ++++++|++++.+++.. .... .. .++.+.+.++|+||.+
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~ 97 (182)
T d1vi2a1 18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNG 97 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceeccc
Confidence 7999999999999999999999987 79999999877654322 1111 11 1244567789999999
Q ss_pred eCChhHH---HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 135 LADPESA---MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 135 ~p~~~~~---~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+|..... ..+. .-...++++.+++|+.-.+..+ .+.+..++.|..+++
T Consensus 98 Tp~G~~~~~~~~~~----~~~~~~~~~~~v~Di~Y~p~~T--~ll~~a~~~g~~~i~ 148 (182)
T d1vi2a1 98 TKVGMKPLENESLV----NDISLLHPGLLVTECVYNPHMT--KLLQQAQQAGCKTID 148 (182)
T ss_dssp SSTTSTTSCSCCSC----CCGGGSCTTCEEEECCCSSSSC--HHHHHHHTTTCEEEC
T ss_pred cCCccccccchhhh----hHHHhhhcchhhHHhhcCcccc--HHHHHHHHCcCeEec
Confidence 9864321 1111 1134578899999996443332 445556666766655
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.03 E-value=7.3e-06 Score=61.55 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=47.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh----------CC--CccCCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS----------LG--AKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~----------~g--~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
+||+|||+|++|..+|-.+...+. ++.++|.++++.+.... .. +....+.++ ++++|+|+++...
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-~~~advvvitag~ 79 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-TANSDVIVVTSGA 79 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG-GTTCSEEEECCSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH-hcCCCEEEEeeec
Confidence 689999999999999999887765 89999998875433211 11 122345554 6899999998853
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.02 E-value=3.9e-06 Score=64.22 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=47.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhh----HHh----CC---CccCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LIS----LG---AKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~----~~~----~g---~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
..||+|||+|++|..+|..+...|. ++.++|+++++.+. +.. .+ .....+.+ .++++|+|+++...
T Consensus 19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~-~~~~adivvitag~ 97 (159)
T d2ldxa1 19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYN-VSANSKLVIITAGA 97 (159)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGG-GGTTEEEEEECCSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchh-hhccccEEEEeccc
Confidence 4789999999999999999998875 89999998765432 221 11 11223544 46899999987643
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=2.3e-05 Score=60.42 Aligned_cols=90 Identities=20% Similarity=0.170 Sum_probs=67.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-----CCHHHHhh--------cCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA--------SCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~--------~aDivv~~~p 136 (290)
+.+|.|+|+|.+|...++.++..|. +|++.|+++++.+.+++.|...+ .+..+..+ ..|+|+.+++
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G 106 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTG 106 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSC
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccC
Confidence 6889999999999999999999998 79999999999888877775421 23333322 4799999987
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEecCC
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
.+...... ++.++++..++..+..
T Consensus 107 ~~~~~~~a-------~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 107 AEASIQAG-------IYATRSGGTLVLVGLG 130 (171)
T ss_dssp CHHHHHHH-------HHHSCTTCEEEECSCC
T ss_pred CchhHHHH-------HHHhcCCCEEEEEecC
Confidence 64433332 5667888888777643
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.02 E-value=7.4e-06 Score=62.04 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=47.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CCC--cc-CCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGA--KY-QPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~--~~-~~~~~~~~~~aDivv~~~p 136 (290)
..||+|||+|.+|..+|..+...+. ++.++|+++++.+..+. .+. .. ..+..+.++++|+|+++..
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag 80 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG 80 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecc
Confidence 4799999999999999988877764 89999998876443221 011 11 1233456799999999876
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.01 E-value=1.7e-05 Score=59.61 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=47.3
Q ss_pred eEEEEcc-cHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHhCCC---------ccCCCHHHHhhcCCeEEEEeC
Q 022909 73 RIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGA---------KYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 73 ~IgiiG~-G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~~g~---------~~~~~~~~~~~~aDivv~~~p 136 (290)
||+|||+ |.+|+.+|..+...|. ++.++|.++.+.+...-... ....+..+.+++||+|+++..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag 77 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG 77 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCC
Confidence 7999995 9999999999998875 79999987654433221111 123456778899999999865
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=97.99 E-value=3.6e-06 Score=65.35 Aligned_cols=66 Identities=20% Similarity=0.320 Sum_probs=47.3
Q ss_pred CCeEEEEcccHhHHHHHH--HHHHC----CCeEEEEeCCccchhhHHh--------C----CCccCCCHHHHhhcCCeEE
Q 022909 71 PGRIGFLGMGIMGTPMAQ--NLLKA----GCDVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVTF 132 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~--~l~~~----g~~V~~~d~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDivv 132 (290)
.+||+|||+|.+|...+- .+... +.++.++|+++++.+.... . .+...++.++.++++|+|+
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv 81 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 81 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence 589999999999976432 23322 3599999999877553221 1 1234578999999999999
Q ss_pred EEeC
Q 022909 133 AMLA 136 (290)
Q Consensus 133 ~~~p 136 (290)
++..
T Consensus 82 ~~~~ 85 (171)
T d1obba1 82 NTAM 85 (171)
T ss_dssp ECCC
T ss_pred eecc
Confidence 8764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.97 E-value=2.6e-05 Score=59.95 Aligned_cols=90 Identities=13% Similarity=0.051 Sum_probs=64.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-------CCHHHH---h-----hcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-------PSPDEV---A-----ASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~---~-----~~aDivv~~~ 135 (290)
+.+|.|+|+|.||...++.++..|.+|+++++++++.+.+++.|.... .+..+. + ...|+|+.++
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~ 106 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCS 106 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECS
T ss_pred CCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecC
Confidence 688999999999999999999999999999999998887777654211 122222 1 2378888887
Q ss_pred CChhHHHHHhcccccccccCCCCCEEEEecCC
Q 022909 136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
..+...... ++.++++..++..+..
T Consensus 107 g~~~~~~~a-------~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 107 GNEKCITIG-------INITRTGGTLMLVGMG 131 (170)
T ss_dssp CCHHHHHHH-------HHHSCTTCEEEECSCC
T ss_pred CChHHHHHH-------HHHHhcCCceEEEecC
Confidence 654333332 4567788887777643
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.97 E-value=9e-06 Score=61.06 Aligned_cols=65 Identities=12% Similarity=0.315 Sum_probs=47.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhh----HHh----CC---CccCCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LIS----LG---AKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~----~~~----~g---~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
.||+|||+|++|..+|-.+...|. ++.++|+++++.+. +.. .+ +...++.+ .+++||+|+++.-.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~-~~~daDvVVitaG~ 79 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE-ICRDADMVVITAGP 79 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG-GGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHH-HhhCCcEEEEeccc
Confidence 689999999999999999998876 89999999866432 111 01 12234444 57899999998653
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.95 E-value=5.9e-06 Score=66.97 Aligned_cols=108 Identities=13% Similarity=0.179 Sum_probs=76.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCccCCCHHHHhh-cCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~-~aDivv~~~p~~~~~~~~~~~~ 148 (290)
++||.|-|+|++|+.+|+.|...|.+|++.|.++...+.+.. .|.... +.++++. +|||++-|-- .+.+ +
T Consensus 39 g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~~~cDIl~PcA~-----~~~I--~ 110 (230)
T d1leha1 39 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCAL-----GAVL--N 110 (230)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSC-----SCCB--S
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcccccccccEeccccc-----cccc--C
Confidence 899999999999999999999999999999999877766554 555555 4555554 6999987653 2333 3
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+.++- .+|+-.+...+.+. +..+.|.++++.|+.
T Consensus 111 ~~~~~~l~a-k~Ive~ANn~~t~~-ea~~~L~~rGI~~iP 148 (230)
T d1leha1 111 DFTIPQLKA-KVIAGSADNQLKDP-RHGKYLHELGIVYAP 148 (230)
T ss_dssp TTHHHHCCC-SEECCSCSCCBSSH-HHHHHHHHHTCEECC
T ss_pred hHHhhccCc-cEEEecccCCCCCc-hHHHHHHhhCcEEEe
Confidence 334444543 46665555555544 446778888887754
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.92 E-value=6.5e-06 Score=61.02 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=49.9
Q ss_pred cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccC
Q 022909 234 VGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDG 287 (290)
Q Consensus 234 ~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~ 287 (290)
.|++..+|+++|++.... .+++|++.++++.|+|++++.+++..+.++|+.+..
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~ 55 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATEN 55 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhh
Confidence 478999999999998888 999999999999999999999999999999987653
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.89 E-value=2.5e-05 Score=59.87 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=47.6
Q ss_pred CeEEEEcccHhHHHHHHHHH--HC----CCeEEEEeCCccchhhHHh---------CCCccCCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLL--KA----GCDVTVWNRTKSKCDPLIS---------LGAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~--~~----g~~V~~~d~~~~~~~~~~~---------~g~~~~~~~~~~~~~aDivv~~~p 136 (290)
|||+|||.|.+|...+-... .. ..++.++|.++++.+...+ ..+...++.++.+++||+|+++.-
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 68999999999877764422 22 3489999999887654332 123345678899999999999875
Q ss_pred C
Q 022909 137 D 137 (290)
Q Consensus 137 ~ 137 (290)
.
T Consensus 81 ~ 81 (162)
T d1up7a1 81 P 81 (162)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.88 E-value=1.2e-05 Score=61.91 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=63.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC------CCH-HHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ------PSP-DEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~------~~~-~~~~~~aDivv~~~p~~~~~~~ 143 (290)
+.+|.|+|+|.+|...++.++..|.+|+++++++++.+.+++.|...+ .+. +......|+++.++......
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~-- 105 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI-- 105 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC--
T ss_pred CCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc--
Confidence 689999999999999999999999999999999999888888765321 111 12233468888876543221
Q ss_pred HhcccccccccCCCCCEEEEec
Q 022909 144 VACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s 165 (290)
.+ ...++.++++..++.++
T Consensus 106 ~~---~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 106 DF---NIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp CT---TTGGGGEEEEEEEEECC
T ss_pred hH---HHHHHHhhccceEEEec
Confidence 11 22356677777777765
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.86 E-value=1.1e-05 Score=62.96 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=39.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+|+|.+|...++.++.+|. +|++.++++++.+.+++.|.
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa 74 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 74 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CCEEEEECCCccchhheecccccccccccccccccccccccccccc
Confidence 6899999999999999999999997 79999999988877766554
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.85 E-value=3e-05 Score=60.01 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=28.1
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCC-CeEE-EEeCCcc
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAG-CDVT-VWNRTKS 105 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g-~~V~-~~d~~~~ 105 (290)
|.+||||.|+|+||+.+.+.+.... .+|. +.|+++.
T Consensus 1 M~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~ 38 (172)
T d2czca2 1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPD 38 (172)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCS
T ss_pred CcEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCCh
Confidence 4689999999999999999997654 5554 5566554
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=1.8e-05 Score=60.92 Aligned_cols=89 Identities=20% Similarity=0.268 Sum_probs=64.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC---CCHHH---HhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDE---VAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~---~~~~aDivv~~~p~~~~~~~~ 144 (290)
+.+|.|+|+|.+|...++.++..|.++++.++++++.+.+++.|...+ .+.+. ..+..|+++.++..+......
T Consensus 31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~ 110 (168)
T d1uufa2 31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDF 110 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHH
T ss_pred CCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHHHH
Confidence 689999999999999999999999999999999888777777664321 12221 223578999888764444433
Q ss_pred hcccccccccCCCCCEEEEecC
Q 022909 145 ACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~ 166 (290)
++.++++..++.++.
T Consensus 111 -------~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 111 -------TTLLKRDGTMTLVGA 125 (168)
T ss_dssp -------HTTEEEEEEEEECCC
T ss_pred -------HHHHhcCCEEEEecc
Confidence 355677777777653
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.82 E-value=6.6e-06 Score=63.83 Aligned_cols=109 Identities=19% Similarity=0.141 Sum_probs=69.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----CCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
+++|.|+|+|..+++++..|...+.+|++++|+.++.+.+.+. .+......+..+.++|+||.++|....... .
T Consensus 18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~~~~-~ 96 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGGT-A 96 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--------
T ss_pred CCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeecccccccccc-c
Confidence 7899999999999999999998788999999999887776551 122221122235679999999987542211 1
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCC
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 184 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~ 184 (290)
......++++..++|..-..+..+ .+.+..++.|.
T Consensus 97 ---~~~~~~~~~~~~~~D~vy~~p~~T-~~l~~A~~~g~ 131 (171)
T d1p77a1 97 ---SVDAEILKLGSAFYDMQYAKGTDT-PFIALCKSLGL 131 (171)
T ss_dssp ---CCCHHHHHHCSCEEESCCCTTSCC-HHHHHHHHTTC
T ss_pred ---chhhhhhcccceeeeeeccCcccH-HHHHHHHHcCC
Confidence 112334556777888754444333 34445555555
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=3.2e-05 Score=59.03 Aligned_cols=73 Identities=23% Similarity=0.330 Sum_probs=59.9
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||-+. +|+.++..|...|..|+.++... .++.+.++++|+|+.++..+ +++ .
T Consensus 37 GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~p----~~i--~- 95 (166)
T d1b0aa1 37 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKP----GFI--P- 95 (166)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCT----TCB--C-
T ss_pred cceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccCc----ccc--c-
Confidence 89999999766 99999999999999999887543 25667789999999999764 334 2
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++|+|+++||++.
T Consensus 96 --~~~vk~g~vvIDvGi 110 (166)
T d1b0aa1 96 --GDWIKEGAIVIDVGI 110 (166)
T ss_dssp --TTTSCTTCEEEECCC
T ss_pred --ccccCCCcEEEecCc
Confidence 467899999999853
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.74 E-value=3.4e-05 Score=55.66 Aligned_cols=103 Identities=21% Similarity=0.280 Sum_probs=74.9
Q ss_pred CeEEEEcc----cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 72 GRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 72 ~~IgiiG~----G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
|+|+|||+ |+.|..+.+.|...|++|+.++++.+.. .|.....++.|+-...|++++++|. +.+..++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp~-~~~~~~l-- 73 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVA-- 73 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCH-HHHHHHH--
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeCH-HHHHHHH--
Confidence 68999994 7899999999999999999888765432 3677778899888888999999975 5566666
Q ss_pred cccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+ +....+++..+ ...+++.+.+++.|+.++.
T Consensus 74 -~~~~~-~g~k~v~~~~g----~~~~~~~~~a~~~gi~vig 108 (116)
T d1y81a1 74 -KEAVE-AGFKKLWFQPG----AESEEIRRFLEKAGVEYSF 108 (116)
T ss_dssp -HHHHH-TTCCEEEECTT----SCCHHHHHHHHHHTCEEEC
T ss_pred -HHHHh-cCCceEEeccc----hhhHHHHHHHHHcCCEEEc
Confidence 22222 23334554322 2344677888888998876
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.74 E-value=1.3e-05 Score=62.40 Aligned_cols=114 Identities=16% Similarity=0.050 Sum_probs=75.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----CC-----ccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GA-----KYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~-----~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
+++|.|+|+|..+++++..|...| +|.+++|++++.+.+.+. .. ....+++.....+|+++.++|....
T Consensus 18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g~~ 96 (177)
T d1nvta1 18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMY 96 (177)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCT
T ss_pred CCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCccccc
Confidence 799999999999999999997776 999999999887765431 01 1123445556789999999986432
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
...-. ...--.+.++++.+++|+.-.+..+ .+.+..++.|..+++
T Consensus 97 ~~~~~-~~~~~~~~~~~~~~v~D~~y~p~~T--~l~~~a~~~G~~~i~ 141 (177)
T d1nvta1 97 PNIDV-EPIVKAEKLREDMVVMDLIYNPLET--VLLKEAKKVNAKTIN 141 (177)
T ss_dssp TCCSS-CCSSCSTTCCSSSEEEECCCSSSSC--HHHHHHHTTTCEEEC
T ss_pred ccccc-cchhhhhccCcccceeeecCCcHhH--HHHHHHHHCCCcccC
Confidence 11100 0001134567888998885444333 455566666666654
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.73 E-value=9.2e-06 Score=62.91 Aligned_cols=107 Identities=16% Similarity=0.123 Sum_probs=64.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC--CeEEEEeCCccchhhHHhCCCccCCCHHHHhhc--CCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivv~~~p~~~~~~~~~~ 146 (290)
..+|||||+|.||+..++.+.... ..+.+++....+ ...........+.++++.+ .|+|++++|...+...+.
T Consensus 7 k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~~~~- 83 (172)
T d1lc0a1 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDYIR- 83 (172)
T ss_dssp SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHHHH-
T ss_pred CcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhcccccccccccc-
Confidence 679999999999999988886542 234444432221 1111112223478999875 588999998766544332
Q ss_pred ccccccccCCCCCE-EEEe-cCCChhHHHHHHHHHHHcCCcE
Q 022909 147 GKHGAASGMGPGKG-YVDV-STVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 147 ~~~~~~~~~~~~~~-lin~-s~~~~~~~~~l~~~l~~~~~~~ 186 (290)
..++.|.. ++.- -.....+.+++.+..++.+..+
T Consensus 84 ------~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~ 119 (172)
T d1lc0a1 84 ------QFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVL 119 (172)
T ss_dssp ------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred ------cccccchhhhcCCCccccHHHHHHHHHHHHHcCCeE
Confidence 23334443 3332 1345667778888777776654
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.72 E-value=1.3e-05 Score=59.12 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=74.0
Q ss_pred CCeEEEEcc----cHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGM----GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~----G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
.++|+|||. |+.|..+.+.|...| .+|+.++++.+.. .|...+.++.|+-...|++++++|. +.+..++
T Consensus 8 PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp~-~~~~~~~ 81 (129)
T d2csua1 8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPK-RFVKDTL 81 (129)
T ss_dssp CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCH-HHHHHHH
T ss_pred CCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEecCh-HHhHHHH
Confidence 799999996 899999999998766 6899888865432 3577778898887889999999975 6666776
Q ss_pred cccccccccCCCCCEEEEecCC------ChhHHHHHHHHHHHcCCcEEe
Q 022909 146 CGKHGAASGMGPGKGYVDVSTV------DGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~------~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+. .-..+++-.+.- ....++++.+..++.++++++
T Consensus 82 ---~~~~~~-g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~G 126 (129)
T d2csua1 82 ---IQCGEK-GVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (129)
T ss_dssp ---HHHHHH-TCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred ---HHHHHc-CCCEEEEecccccccchhhHHHHHHHHHHHHHcCCEEeC
Confidence 222322 223333322211 122344566667777888764
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=5.9e-05 Score=57.92 Aligned_cols=75 Identities=23% Similarity=0.277 Sum_probs=60.9
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||-+. +|+.++..|...|..|+.++.+.. ++.+.++++|+|+.+++.+. ++ .
T Consensus 39 Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~--------------~l~~~~~~aDivi~a~G~~~----~i--~- 97 (170)
T d1a4ia1 39 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA--------------HLDEEVNKGDILVVATGQPE----MV--K- 97 (170)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------SHHHHHTTCSEEEECCCCTT----CB--C-
T ss_pred cceEEEEecCCccchHHHHHHHhccCceEEEecccc--------------cHHHHHhhccchhhcccccc----cc--c-
Confidence 89999999755 999999999999999999886532 45567889999999997743 33 1
Q ss_pred cccccCCCCCEEEEecCCC
Q 022909 150 GAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~ 168 (290)
.++.++|+++||++...
T Consensus 98 --~~~vk~g~iviDvgi~~ 114 (170)
T d1a4ia1 98 --GEWIKPGAIVIDCGINY 114 (170)
T ss_dssp --GGGSCTTCEEEECCCBC
T ss_pred --cccccCCCeEeccCccc
Confidence 45789999999996543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.69 E-value=2.8e-05 Score=60.24 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=39.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+|+|.+|...++.++..|. +|++.|+++++.+..++.|.
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa 73 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA 73 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc
Confidence 6889999999999999999999997 79999999988777776664
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.68 E-value=5.8e-05 Score=55.35 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=58.3
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCCeEE-EEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
|||+|+|+ |+||+.+++.+...|+++. .+|++.. +.+.++|+||=-. .++.+...+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~-----------------~~~~~~DVvIDFS-~p~~~~~~l---- 58 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-----------------EELDSPDVVIDFS-SPEALPKTV---- 58 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-----------------EECSCCSEEEECS-CGGGHHHHH----
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH-----------------HHhccCCEEEEec-CHHHHHHHH----
Confidence 68999996 9999999999999999866 4444321 2245689877554 556666665
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccC
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~ 192 (290)
....+.+.-+|--++|-..+..+..+.+. +.+..+.+|++
T Consensus 59 --~~~~~~~~p~ViGTTG~~~~~~~~i~~~a-k~~pv~~a~N~ 98 (128)
T d1vm6a3 59 --DLCKKYRAGLVLGTTALKEEHLQMLRELS-KEVPVVQAYSR 98 (128)
T ss_dssp --HHHHHHTCEEEECCCSCCHHHHHHHHHHT-TTSEEEECSCT
T ss_pred --HHHHhcCCCEEEEcCCCCHHHHHHHHHHH-hhCCEEeeecc
Confidence 12233445555555554444333333332 34555555543
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.68 E-value=0.00012 Score=56.66 Aligned_cols=66 Identities=11% Similarity=0.172 Sum_probs=43.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC-CeEEE-EeCCccchhhH------------------HhCCCccCCCHHHHhhcCCeE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG-CDVTV-WNRTKSKCDPL------------------ISLGAKYQPSPDEVAASCDVT 131 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g-~~V~~-~d~~~~~~~~~------------------~~~g~~~~~~~~~~~~~aDiv 131 (290)
-||||.|+|+||+.+++.+...+ .+|.. .|+.+...... .+.++....+++++..++|+|
T Consensus 2 IKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV 81 (178)
T d1b7go1 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV 81 (178)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence 47999999999999999998764 57664 45554322111 112333445666666777777
Q ss_pred EEEeCC
Q 022909 132 FAMLAD 137 (290)
Q Consensus 132 v~~~p~ 137 (290)
+.|+|.
T Consensus 82 iecTG~ 87 (178)
T d1b7go1 82 VDTTPN 87 (178)
T ss_dssp EECCST
T ss_pred EECCCC
Confidence 777775
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.68 E-value=3.3e-05 Score=59.41 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=46.9
Q ss_pred CCeEEEEcccHhHHHHH--HHHHHC-C---CeEEEEeCCccchhhHHh--------C----CCccCCCHHHHhhcCCeEE
Q 022909 71 PGRIGFLGMGIMGTPMA--QNLLKA-G---CDVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVTF 132 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la--~~l~~~-g---~~V~~~d~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDivv 132 (290)
..||.|||.|..|...+ ..+... . -++.++|.++++.+...+ . .+....+..|.+++||+|+
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 57899999999986533 333322 2 389999999887653221 1 1234568889999999999
Q ss_pred EEeCC
Q 022909 133 AMLAD 137 (290)
Q Consensus 133 ~~~p~ 137 (290)
++.-.
T Consensus 83 itag~ 87 (167)
T d1u8xx1 83 AHIRV 87 (167)
T ss_dssp ECCCT
T ss_pred ECCCc
Confidence 99743
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=8.8e-05 Score=55.58 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=42.9
Q ss_pred CeEEEEc-ccHhHHHHHHHHH-HC--CCeEEEEeCCccchhh---HHhCCC------ccCCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLL-KA--GCDVTVWNRTKSKCDP---LISLGA------KYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~-~~--g~~V~~~d~~~~~~~~---~~~~g~------~~~~~~~~~~~~aDivv~~~p 136 (290)
|||+||| .|++|+.+|-.|. .. ..++.++|..+..... +..... ...++..+.+++||+|+++.-
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG 78 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAG 78 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCC
Confidence 6899999 5999999998875 33 4689999986532111 111100 111233456899999999874
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=97.65 E-value=2.3e-05 Score=54.53 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=45.7
Q ss_pred CCeEEEEcccHhH-HHHHHHHHHCCCeEEEEeCCcc-chhhHHhCCCccC-CCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMG-TPMAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQ-PSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG-~~la~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~-~~~~~~~~~aDivv~~ 134 (290)
.++|-+||.|.+| +++|+.|...|++|.++|+... ..+.+.+.|+... ....+.+++.|+||..
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S 74 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVS 74 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEEC
T ss_pred CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEEC
Confidence 7899999999999 6779999999999999998643 2345555665432 1223335667766654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.00012 Score=52.19 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=33.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
..||||+|.|..|+.++....+.|++++++|++++.
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 578999999999999999999999999999998764
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.60 E-value=5.6e-05 Score=51.64 Aligned_cols=63 Identities=22% Similarity=0.238 Sum_probs=47.1
Q ss_pred CeEEEEcccHhHH-HHHHHHHHCCCeEEEEeCCcc-chhhHHhCCCccCC-CHHHHhhcCCeEEEE
Q 022909 72 GRIGFLGMGIMGT-PMAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQP-SPDEVAASCDVTFAM 134 (290)
Q Consensus 72 ~~IgiiG~G~iG~-~la~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~-~~~~~~~~aDivv~~ 134 (290)
|||-+||.|.+|. ++|+.|...|++|.++|+.+. ..+.+++.|+.... ...+-+.++|+||..
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~S 67 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKT 67 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEEC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEe
Confidence 7899999999997 789999999999999998753 34556677765431 222335677877665
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=5.7e-05 Score=57.73 Aligned_cols=115 Identities=23% Similarity=0.209 Sum_probs=68.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHC-CCeEE-EEeCCccch-----hh---HHhCCCccCCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKC-----DP---LISLGAKYQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~-g~~V~-~~d~~~~~~-----~~---~~~~g~~~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
.+||+|+|+ |+||+.+++.+... ++++. ++++..... .+ ....++...++++++.+.+|+||=-. .++
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs-~p~ 82 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT-RPE 82 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS-CHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec-cHH
Confidence 589999995 99999999998875 56654 556543211 00 11234556678888889999887664 556
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
.+...+ ....+.+.-+|--++|--.+.....+.+. +.+.++-+|++.
T Consensus 83 ~~~~~~------~~a~~~~~~~ViGTTG~~~~~~~~i~~~a-~~ipi~~apN~S 129 (162)
T d1diha1 83 GTLNHL------AFCRQHGKGMVIGTTGFDEAGKQAIRDAA-ADIAIVFAANFS 129 (162)
T ss_dssp HHHHHH------HHHHHTTCEEEECCCCCCHHHHHHHHHHT-TTSCEEECSCCC
T ss_pred HHHHHH------HHHHhccceeEEecCCCcHHHHHHHHHHc-CCCCEEEEcccc
Confidence 666655 12233445555444554333333333322 245566666653
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=0.00025 Score=53.06 Aligned_cols=90 Identities=12% Similarity=0.193 Sum_probs=50.5
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCC----CeEEEEeCCccchhh--HHhCCCccC-CCHHHHhhcCCeEEEEeCChhHHHH
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAG----CDVTVWNRTKSKCDP--LISLGAKYQ-PSPDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g----~~V~~~d~~~~~~~~--~~~~g~~~~-~~~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
++|||||+ |.+|+.+.+.|.... .++..+..+...... ......... ....+.++++|+++.++|... .+.
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~-s~~ 80 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDY-TNE 80 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHH-HHH
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchH-HHH
Confidence 68999995 999999998776542 256656544332111 111111111 112235689999999997643 333
Q ss_pred HhcccccccccCCCCCEEEEecC
Q 022909 144 VACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.. +... .-..+.++||.|+
T Consensus 81 ~~---~~~~-~~g~~~~VID~Ss 99 (146)
T d1t4ba1 81 IY---PKLR-ESGWQGYWIDAAS 99 (146)
T ss_dssp HH---HHHH-HTTCCCEEEECSS
T ss_pred hh---HHHH-hcCCCeecccCCc
Confidence 32 1111 1223457888874
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.58 E-value=6.1e-05 Score=57.59 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=41.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 116 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~ 116 (290)
+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+++.|..
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~ 73 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS 73 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred CCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc
Confidence 6899999999999999999999999999999999888877776653
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=97.55 E-value=0.00021 Score=55.01 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=26.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC-CeEE-EEeCCcc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG-CDVT-VWNRTKS 105 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g-~~V~-~~d~~~~ 105 (290)
++|||-|+|+||+.+.+.+...+ .+|. +.++++.
T Consensus 2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~ 37 (171)
T d1cf2o1 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD 37 (171)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence 68999999999999999987765 5655 4455543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=97.51 E-value=5.2e-05 Score=59.58 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=37.8
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
+|+|.|.| .|.||+.+++.|...|.+|++.+|++++.+.+.+
T Consensus 23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~ 65 (191)
T d1luaa1 23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 65 (191)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHH
Confidence 89999999 6999999999999999999999999887765543
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.50 E-value=0.00025 Score=52.76 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=43.3
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCC--eEEEEeCCcc--chh----hHHh---C--CCc-cCCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGC--DVTVWNRTKS--KCD----PLIS---L--GAK-YQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~--~V~~~d~~~~--~~~----~~~~---~--g~~-~~~~~~~~~~~aDivv~~~p 136 (290)
.||+||| .|.+|+.+|-.+...+. ++.++|.... ..+ .+.. . ... ...+.+ .+++||+|+++.-
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~-~~~~aDiVvitaG 79 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE-DTAGSDVVVITAG 79 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG-GGTTCSEEEECCC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH-HhhhcCEEEEecc
Confidence 3799999 69999999999998876 7999997432 211 1111 0 111 223444 4689999998754
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.50 E-value=6.9e-05 Score=57.26 Aligned_cols=88 Identities=15% Similarity=0.162 Sum_probs=58.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-----CCHHHH----hhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----PSPDEV----AASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~----~~~aDivv~~~p~~~~~ 141 (290)
+.+|.|+|+|.||...++.++..|.+|++.++++++.+.+++.|...+ .+..+. -.+.|.++++.+.....
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 107 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAF 107 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHHH
T ss_pred CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecCCHHHH
Confidence 689999999999999999999999999999999998887777765322 122222 22345555554443323
Q ss_pred HHHhcccccccccCCCCCEEEEec
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
... ++.++++..++.++
T Consensus 108 ~~a-------~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 108 QSA-------YNSIRRGGACVLVG 124 (168)
T ss_dssp HHH-------HHHEEEEEEEEECC
T ss_pred HHH-------HHHhccCCceEecc
Confidence 222 34556666666554
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.49 E-value=2.5e-05 Score=58.64 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=53.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC---eEEEEeCCccchhhHHhC--CCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~---~V~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
.++|||||+ |..|+.+.+.|...+| ++.....+...-+.+... .....+...+...++|+++.++|... ....
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~-s~~~ 80 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEV-SRAH 80 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHH-HHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcch-hhhh
Confidence 589999995 9999999999986543 565543332221111111 01111112334678999999987533 3333
Q ss_pred hcccccccccCCCCCEEEEecCC
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
. -....+|..+||.|+.
T Consensus 81 ~------~~~~~~g~~VID~Ss~ 97 (144)
T d2hjsa1 81 A------ERARAAGCSVIDLSGA 97 (144)
T ss_dssp H------HHHHHTTCEEEETTCT
T ss_pred c------cccccCCceEEeechh
Confidence 3 1234578899998754
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.48 E-value=0.00025 Score=53.00 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=59.3
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCC----CeEEEEeCCcc--chhhHHhC-C-CccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAG----CDVTVWNRTKS--KCDPLISL-G-AKYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g----~~V~~~d~~~~--~~~~~~~~-g-~~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
||||||| .|..|+.+.+.|.... .++..+..+.. +...+... . .....+ .+.++++|+|++|+|.. ...
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~-~~~~~~~DvvF~alp~~-~s~ 78 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFD-IESLKQLDAVITCQGGS-YTE 78 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTC-HHHHTTCSEEEECSCHH-HHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccc-hhhhccccEEEEecCch-HHH
Confidence 6899999 5999999999887532 35554443321 11111111 0 111122 34578999999999863 333
Q ss_pred HHhcccccccccCCCCCEEEEecCCC-----------hhHHHHHHHHHHHcCCcEE
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVD-----------GDTSKLINGHIKATGASFL 187 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~-----------~~~~~~l~~~l~~~~~~~~ 187 (290)
.+. +.+. .-..+.++||.|..- -++.+.+.++++++.-.|.
T Consensus 79 ~~~---~~l~-~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~k~~~ 130 (147)
T d1mb4a1 79 KVY---PALR-QAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFV 130 (147)
T ss_dssp HHH---HHHH-HTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred HHh---HHHH-HcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCCccee
Confidence 333 1111 122335788887432 3344556666654433344
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.48 E-value=5.9e-05 Score=56.57 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=44.5
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCC--eEEEEeCCccc--hhh----HHh--C----CCcc---CCCHHHHhhcCCeEEE
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSK--CDP----LIS--L----GAKY---QPSPDEVAASCDVTFA 133 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~--~V~~~d~~~~~--~~~----~~~--~----g~~~---~~~~~~~~~~aDivv~ 133 (290)
|||+|||+ |.+|+.+|..+...|. ++.++|++++. .+. +.+ . .... .++..+.+++||+|++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 68999995 9999999999998884 89999987532 121 111 0 1111 1223456789999999
Q ss_pred Ee
Q 022909 134 ML 135 (290)
Q Consensus 134 ~~ 135 (290)
+.
T Consensus 81 tA 82 (145)
T d1hyea1 81 TS 82 (145)
T ss_dssp CC
T ss_pred ec
Confidence 84
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.46 E-value=8.9e-05 Score=57.23 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=59.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhCCCccC-----CCHHHHhhc-----CCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAAS-----CDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~~-----aDivv~~~p~~~ 139 (290)
+.+|.|+|+|.+|...++.++..|.+ |++.++++++.+.+++.|...+ .+..+.+++ .|+|+.++....
T Consensus 29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~~ 108 (174)
T d1f8fa2 29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPE 108 (174)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHH
T ss_pred CCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcHH
Confidence 68899999999999999999999875 5677999888877777664311 223332221 588888876543
Q ss_pred HHHHHhcccccccccCCCCCEEEEec
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
..+.. ++.++++..++.++
T Consensus 109 ~~~~~-------~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 109 ILKQG-------VDALGILGKIAVVG 127 (174)
T ss_dssp HHHHH-------HHTEEEEEEEEECC
T ss_pred HHHHH-------HhcccCceEEEEEe
Confidence 33332 34566666666554
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.46 E-value=0.00014 Score=55.90 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=44.7
Q ss_pred CeEEEEcccHhH--HHHHHHHHHCC----CeEEEEeCCccc--hhhHH--------hCCC----ccCCCHHHHhhcCCeE
Q 022909 72 GRIGFLGMGIMG--TPMAQNLLKAG----CDVTVWNRTKSK--CDPLI--------SLGA----KYQPSPDEVAASCDVT 131 (290)
Q Consensus 72 ~~IgiiG~G~iG--~~la~~l~~~g----~~V~~~d~~~~~--~~~~~--------~~g~----~~~~~~~~~~~~aDiv 131 (290)
+||.|||+|..| ..++..+.... -++.++|+++++ .+.+. +.+. ...++..+.+++||+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 789999999876 44555555432 389999998754 22211 1122 2446788889999999
Q ss_pred EEEeCC
Q 022909 132 FAMLAD 137 (290)
Q Consensus 132 v~~~p~ 137 (290)
+++...
T Consensus 82 v~ta~~ 87 (169)
T d1s6ya1 82 TTQFRV 87 (169)
T ss_dssp EECCCT
T ss_pred EEcccc
Confidence 999864
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.45 E-value=0.00014 Score=54.04 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=74.6
Q ss_pred CCeEEEEcc----cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~----G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.++|+|||+ ++.|..+.+.|..+|++|+.+++..+.. .|.....++.|+-...|++++++|. ..+..++
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp~-~~~~~~~- 91 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYV- 91 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECSCH-HHHHHHH-
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEeCH-HHHHHHH-
Confidence 589999996 6899999999999999999888765332 3567778999988889999999975 6666666
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+ .....+++..+.- .+++.+.+++.|+.++.
T Consensus 92 --~e~~~-~g~k~v~~~~G~~----~ee~~~~a~~~gi~vig 126 (139)
T d2d59a1 92 --EQAIK-KGAKVVWFQYNTY----NREASKKADEAGLIIVA 126 (139)
T ss_dssp --HHHHH-HTCSEEEECTTCC----CHHHHHHHHHTTCEEEE
T ss_pred --HHHHH-hCCCEEEEecccc----CHHHHHHHHHCCCEEEc
Confidence 22222 2334455533322 23566677788888775
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.44 E-value=0.00043 Score=56.04 Aligned_cols=111 Identities=16% Similarity=0.100 Sum_probs=65.7
Q ss_pred CCeEEEEcccHh----HHHHHHHHHHC--CCeEE-EEeCCccchhhHHh-CCC---ccCCCHHHHhhc--CCeEEEEeCC
Q 022909 71 PGRIGFLGMGIM----GTPMAQNLLKA--GCDVT-VWNRTKSKCDPLIS-LGA---KYQPSPDEVAAS--CDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~i----G~~la~~l~~~--g~~V~-~~d~~~~~~~~~~~-~g~---~~~~~~~~~~~~--aDivv~~~p~ 137 (290)
..||||||+|.+ ++.....+... +.+|. ++|+++++.+.+.+ .++ ..++++++++++ -|+|++++|.
T Consensus 16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp~ 95 (237)
T d2nvwa1 16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV 95 (237)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCCC
Confidence 579999999874 45555556553 46765 78999887776654 443 345799999874 6789999886
Q ss_pred hhHHHHHhcccccccccCCCCC-EEEEec-CCChhHHHHHHHHHHHc
Q 022909 138 PESAMDVACGKHGAASGMGPGK-GYVDVS-TVDGDTSKLINGHIKAT 182 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~-~lin~s-~~~~~~~~~l~~~l~~~ 182 (290)
..+.+.+...-+ .....+.+. +++.-= .....+.+++.+..+++
T Consensus 96 ~~h~~~~~~al~-aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~ 141 (237)
T d2nvwa1 96 PEHYEVVKNILE-HSSQNLNLRYLYVEWALAASVQQAEELYSISQQR 141 (237)
T ss_dssp HHHHHHHHHHHH-HSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred cchhhHHHHHHH-hcccccCCceEEEeccccCCHHHHHHHHHHHhhc
Confidence 555443331100 001122233 444321 22344556677766554
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.40 E-value=0.00066 Score=52.27 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=58.0
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHh-----CC--CccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-----LG--AKYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~-----~g--~~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
+||||+| .|..|+.+.+.|..+- .++.....+...-+.+.+ .+ .....+.+++.+++|++++++|.... .
T Consensus 2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s-~ 80 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-Y 80 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH-H
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH-H
Confidence 6899999 5999999999999864 355544222211122221 11 11224667777889999999987544 3
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHH
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTS 172 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~ 172 (290)
... ... .+..+||.|..--.+.
T Consensus 81 ~~~-------~~~-~~~~VIDlSadfRl~~ 102 (176)
T d1vkna1 81 DLV-------REL-KGVKIIDLGADFRFDD 102 (176)
T ss_dssp HHH-------TTC-CSCEEEESSSTTTCSS
T ss_pred HHH-------Hhh-ccceEEecCccccccc
Confidence 443 112 5778999986554433
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.38 E-value=0.00054 Score=52.80 Aligned_cols=89 Identities=21% Similarity=0.207 Sum_probs=61.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC------CC-HHHHh-----hcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ------PS-PDEVA-----ASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~------~~-~~~~~-----~~aDivv~~~p~ 137 (290)
+.+|.|+|+|.+|...++.++..|. +|++.|+++++.+..++.|...+ ++ .+++. ...|+++.++..
T Consensus 30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~ 109 (176)
T d1d1ta2 30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGH 109 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSCC
T ss_pred CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCCc
Confidence 6889999999999999999999995 89999999999888877765422 11 12121 247888888766
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEec
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
+......+ ....+++..++.++
T Consensus 110 ~~~~~~a~------~~~~~~~G~~v~vG 131 (176)
T d1d1ta2 110 LETMIDAL------ASCHMNYGTSVVVG 131 (176)
T ss_dssp HHHHHHHH------TTSCTTTCEEEECS
T ss_pred hHHHHHHH------HHhhcCCeEEEEEE
Confidence 54444433 22233434555554
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=97.38 E-value=0.00012 Score=54.15 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=76.6
Q ss_pred CCeEEEEcc----cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~----G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.++|+|||+ ++.|..+.+.|...|+++..+.+++.. +.. .|.....++.++-...|++++++|. +.+..++
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~-~~i--~g~~~~~~l~~i~~~iD~v~v~~p~-~~v~~~v- 87 (136)
T d1iuka_ 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG-EEL--FGEEAVASLLDLKEPVDILDVFRPP-SALMDHL- 87 (136)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT-SEE--TTEECBSSGGGCCSCCSEEEECSCH-HHHTTTH-
T ss_pred CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecccc-cee--eceecccchhhccCCCceEEEeccH-HHHHHHH-
Confidence 589999997 899999999999999999999887532 111 3566777888887788999999974 5566666
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+ +....+++..+ ...+++.+.+++.|+.++.
T Consensus 88 --~~~~~-~g~k~i~~q~G----~~~~e~~~~a~~~Gi~vV~ 122 (136)
T d1iuka_ 88 --PEVLA-LRPGLVWLQSG----IRHPEFEKALKEAGIPVVA 122 (136)
T ss_dssp --HHHHH-HCCSCEEECTT----CCCHHHHHHHHHTTCCEEE
T ss_pred --HHHHh-hCCCeEEEecC----ccCHHHHHHHHHcCCEEEc
Confidence 22222 23445665332 2244677888888998875
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.35 E-value=0.00054 Score=52.69 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=60.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccCC-------CHHHHh-----hcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQP-------SPDEVA-----ASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-------~~~~~~-----~~aDivv~~~p~ 137 (290)
+.+|.|+|+|.+|...++.++..|. +|++.|+++++.+..++.|...+. ...+.. ...|+++.++..
T Consensus 29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~ 108 (174)
T d1e3ia2 29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGT 108 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCC
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEeccc
Confidence 6899999999999999999999998 688999999988877777653221 112222 236888888766
Q ss_pred hhHHHHHhcccccccccCCCC-CEEEEec
Q 022909 138 PESAMDVACGKHGAASGMGPG-KGYVDVS 165 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~-~~lin~s 165 (290)
+...... ++.++++ ..++-++
T Consensus 109 ~~~~~~a-------~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 109 AQTLKAA-------VDCTVLGWGSCTVVG 130 (174)
T ss_dssp HHHHHHH-------HHTBCTTTCEEEECC
T ss_pred chHHHHH-------HHHhhcCCeEEEecC
Confidence 4443332 3445553 3444443
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.34 E-value=0.00011 Score=55.62 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=43.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCC--ccchhhHHh---C-------CCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRT--KSKCDPLIS---L-------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~--~~~~~~~~~---~-------g~~~~~~~~~~~~~aDi 130 (290)
++||+|||+ |.+|+.++-.|...+. ...+++.. .++.+.... . .....++..+.++++|+
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv 83 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence 689999996 9999999999987543 12333332 222222111 1 22344677888999999
Q ss_pred EEEEeC
Q 022909 131 TFAMLA 136 (290)
Q Consensus 131 vv~~~p 136 (290)
|+++.-
T Consensus 84 ViitaG 89 (154)
T d1y7ta1 84 ALLVGA 89 (154)
T ss_dssp EEECCC
T ss_pred EEeecC
Confidence 999763
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=97.33 E-value=0.00072 Score=54.84 Aligned_cols=108 Identities=17% Similarity=0.176 Sum_probs=69.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc--------cchhhHH---------------h-CCCccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK--------SKCDPLI---------------S-LGAKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~--------~~~~~~~---------------~-~g~~~~~~~~~~~~ 126 (290)
++||.|-|+|++|+.+|+.|...|.+|+.++-.. -..+.+. . .+.....+.++++.
T Consensus 31 g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 110 (242)
T d1v9la1 31 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFK 110 (242)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchhcc
Confidence 8999999999999999999999999987554221 1111111 1 23334444556554
Q ss_pred -cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 127 -SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 127 -~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+|||++-|-. ...+ +++..+.++. ++|+-.+.++. +.++ .+.|.++++.|+.
T Consensus 111 ~~~DIliPcA~-----~~~I--~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~~~P 163 (242)
T d1v9la1 111 LDVDIFVPAAI-----ENVI--RGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVVVVP 163 (242)
T ss_dssp CCCSEEEECSC-----SSCB--CTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCEEEC
T ss_pred ccccEEeecch-----hccc--cHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeEEeC
Confidence 6999987653 3344 4445555643 46665656654 4444 5788888888764
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=8.7e-05 Score=49.13 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=32.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
|+|||+|.|..|+.++......|+++.++|++++.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~ 36 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP 36 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence 78999999999999999999999999999987653
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.30 E-value=0.00048 Score=52.98 Aligned_cols=74 Identities=22% Similarity=0.198 Sum_probs=54.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccCC-----C--HHHHhh-----cCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQP-----S--PDEVAA-----SCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-----~--~~~~~~-----~aDivv~~~p~ 137 (290)
+.+|.|+|+|.+|...++.++..|. +|++.|+++++.+..++.|...+- + .++..+ ..|+++.++..
T Consensus 28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~ 107 (174)
T d1p0fa2 28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGR 107 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred CCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCCC
Confidence 6899999999999999999999986 799999999998888887765321 1 222222 36888877765
Q ss_pred hhHHHHH
Q 022909 138 PESAMDV 144 (290)
Q Consensus 138 ~~~~~~~ 144 (290)
++.....
T Consensus 108 ~~~~~~~ 114 (174)
T d1p0fa2 108 IETMMNA 114 (174)
T ss_dssp HHHHHHH
T ss_pred chHHHHH
Confidence 4444433
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.00025 Score=57.77 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=56.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEe--CChhHHHHHhcc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~--p~~~~~~~~~~~ 147 (290)
++++.|.|. +.||+++|+.|++.|.+|.+++|++++.++..+. +.+. ..++..+.+ ...+..+.++
T Consensus 7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~-------~~~~--~~~~~~~~~Dvs~~~~v~~~~-- 75 (244)
T d1yb1a_ 7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK-------CKGL--GAKVHTFVVDCSNREDIYSSA-- 75 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHH--
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEeeCCCHHHHHHHH--
Confidence 888989886 6699999999999999999999998877665441 1111 223333333 3445556665
Q ss_pred cccccccCCCCCEEEEecCC
Q 022909 148 KHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~ 167 (290)
+.+.+...+=.++||.+..
T Consensus 76 -~~i~~~~g~idilinnag~ 94 (244)
T d1yb1a_ 76 -KKVKAEIGDVSILVNNAGV 94 (244)
T ss_dssp -HHHHHHTCCCSEEEECCCC
T ss_pred -HHHHHHcCCCceeEeeccc
Confidence 3344455555567777643
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.25 E-value=5.4e-05 Score=58.21 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=60.8
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc------------cCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK------------YQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~------------~~~~~~~~~~~aDivv~~~p~ 137 (290)
++++.|||-++ +|+.+|..|...|..|+.++.+...... ...... ..+.+.+...++|+||.++|.
T Consensus 29 GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG~ 107 (171)
T d1edza1 29 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT-RGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPS 107 (171)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE-SCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccc-cccceeeeeeccccccccchhHHhhccccCCEEEEccCC
Confidence 89999999775 5999999999999999988765321100 000000 012256667789999999987
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEecCC
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
+.- .+ -.++.|+|+++||++..
T Consensus 108 p~~---~i-----~~d~ik~GavvIDvGi~ 129 (171)
T d1edza1 108 ENY---KF-----PTEYIKEGAVCINFACT 129 (171)
T ss_dssp TTC---CB-----CTTTSCTTEEEEECSSS
T ss_pred Ccc---cc-----ChhhcccCceEeecccc
Confidence 431 12 14567999999999754
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=97.21 E-value=0.00049 Score=56.42 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=54.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+|++.|.| .+.||+++|+.|++.|++|.+.+|++++.++..+. +.+.-.+...+.+=+...++.+.++ +
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~-------~~~~~~~~~~~~~D~s~~~~~~~~~---~ 75 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI-------WREKGLNVEGSVCDLLSRTERDKLM---Q 75 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHH---H
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCceEEEeecCCHHHHHHHH---H
Confidence 89999999 58899999999999999999999998766554331 1111111112222223445566665 2
Q ss_pred cccccC-CCCCEEEEecCC
Q 022909 150 GAASGM-GPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~-~~~~~lin~s~~ 167 (290)
+..+.. .+-.++||.+..
T Consensus 76 ~~~~~~~g~idilinnag~ 94 (258)
T d1ae1a_ 76 TVAHVFDGKLNILVNNAGV 94 (258)
T ss_dssp HHHHHTTSCCCEEEECCCC
T ss_pred HHHHHhCCCcEEEeccccc
Confidence 333444 345677876543
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.15 E-value=0.00046 Score=50.84 Aligned_cols=88 Identities=23% Similarity=0.325 Sum_probs=63.2
Q ss_pred CCeEEEEccc----------HhHHHHHHHHHHCCCeEEEEeCCccch-------hhHH----hCCCccCCCHHHHhhcCC
Q 022909 71 PGRIGFLGMG----------IMGTPMAQNLLKAGCDVTVWNRTKSKC-------DPLI----SLGAKYQPSPDEVAASCD 129 (290)
Q Consensus 71 ~~~IgiiG~G----------~iG~~la~~l~~~g~~V~~~d~~~~~~-------~~~~----~~g~~~~~~~~~~~~~aD 129 (290)
+++|+|+|+- .-...+++.|...|.+|.+||+.-+.. +... ......+++++++++++|
T Consensus 13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~D 92 (136)
T d1mv8a3 13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSD 92 (136)
T ss_dssp CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCS
T ss_pred CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhce
Confidence 6899999973 466789999999999999999853211 1111 112445789999999999
Q ss_pred eEEEEeCChhHHHHHhcccccccccCCCCCEEEEecC
Q 022909 130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 130 ivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+|+++++.+. .+.+. ..++++.+|+|+-+
T Consensus 93 ~ivi~t~h~~-f~~l~-------~~~~~~~~I~D~~~ 121 (136)
T d1mv8a3 93 VLVLGNGDEL-FVDLV-------NKTPSGKKLVDLVG 121 (136)
T ss_dssp EEEECSCCGG-GHHHH-------HSCCTTCEEEESSS
T ss_pred EEEEEeCCHH-HHHHH-------HHhcCCCEEEECCC
Confidence 9999998743 33332 34667789999854
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.13 E-value=0.0003 Score=54.03 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=59.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHh------hcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA------ASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~------~~aDivv~~~p~~~~~~~ 143 (290)
+.+|.|.|. |.+|....+.++..|.+|++.++++++.+.+++.|...+-+..+.. ...|+|+-++.. ....
T Consensus 28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~--~~~~ 105 (171)
T d1iz0a2 28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGK--EVEE 105 (171)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCT--THHH
T ss_pred CCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccch--hHHH
Confidence 689999995 9999999999999999999999998888887777764332222211 236777765532 2222
Q ss_pred HhcccccccccCCCCCEEEEec
Q 022909 144 VACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s 165 (290)
.++.++++..++.++
T Consensus 106 -------~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 106 -------SLGLLAHGGRLVYIG 120 (171)
T ss_dssp -------HHTTEEEEEEEEEC-
T ss_pred -------HHHHHhcCCcEEEEe
Confidence 245566776666664
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.03 E-value=0.00046 Score=52.87 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=60.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-----CCHHHHhh-----cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA-----SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~-----~aDivv~~~p~~~ 139 (290)
+.+|.|+|+|.+|...++.++..|. .|++.++++++.+.+++.|...+ ++.++..+ ..|+|+.++....
T Consensus 33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~ 112 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQA 112 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHH
T ss_pred CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcch
Confidence 6889999999999999999988885 77888999988887777654311 11222232 2678887776543
Q ss_pred HHHHHhcccccccccCCCCCEEEEec
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
..... ++.++++..++.++
T Consensus 113 ~~~~a-------~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 113 TVDYT-------PYLLGRMGRLIIVG 131 (172)
T ss_dssp HHHHG-------GGGEEEEEEEEECC
T ss_pred HHHHH-------HHHHhCCCEEEEEe
Confidence 33322 45567777776664
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.98 E-value=0.0036 Score=45.77 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=59.0
Q ss_pred eEEEEc-ccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHhCCCccCCCHHHHh-hcCCeEEEEeCChhHHHHHhccc
Q 022909 73 RIGFLG-MGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 73 ~IgiiG-~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
||+|+| .|+||+.+++.+... ++++. .+|+.. ++.... ..+|+||=-. .++.+...+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~---------------~~~~~~~~~~DvvIDFS-~p~~~~~~~--- 61 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD---------------PLSLLTDGNTEVVIDFT-HPDVVMGNL--- 61 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC---------------CTHHHHTTTCSEEEECC-CTTTHHHHH---
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC---------------chhhhccccCCEEEEcc-cHHHHHHHH---
Confidence 699999 599999999987764 56654 455432 122222 4689887665 456665555
Q ss_pred ccccccCCCCCEEEEecCCCh-hHHHHHHHHH-HHcCCcEEeCccCC
Q 022909 149 HGAASGMGPGKGYVDVSTVDG-DTSKLINGHI-KATGASFLEAPVSG 193 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~-~~~~~l~~~l-~~~~~~~~~~p~~~ 193 (290)
-...+.+.-+|--++|-. ...+.+.+.+ .++.+.++-+|+|.
T Consensus 62 ---~~~~~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNfS 105 (135)
T d1yl7a1 62 ---EFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFT 105 (135)
T ss_dssp ---HHHHHTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCCG
T ss_pred ---HHHHhcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCCcc
Confidence 122344555554445443 3344554533 35567777777764
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.95 E-value=0.00061 Score=55.69 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=50.4
Q ss_pred CeEEEE-c-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEe--CChhHHHHHhcc
Q 022909 72 GRIGFL-G-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACG 147 (290)
Q Consensus 72 ~~Igii-G-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~--p~~~~~~~~~~~ 147 (290)
|||++| | .+.||+++|+.|++.|++|.+.+|++++.++..+ ++.+. ..+++.+.+ ...++++.++
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~-------~i~~~--g~~~~~~~~Dv~~~~~v~~~~-- 69 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVAS-------EINQA--GGHAVAVKVDVSDRDQVFAAV-- 69 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHT--TCCEEEEECCTTSHHHHHHHH--
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------HHHhc--CCcEEEEEeeCCCHHHHHHHH--
Confidence 466555 6 5779999999999999999999999877655433 11111 123333332 2445555665
Q ss_pred cccccccCCCCCEEEEecC
Q 022909 148 KHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~ 166 (290)
++..+...+=.++||.+.
T Consensus 70 -~~~~~~~g~iDilVnnAG 87 (255)
T d1gega_ 70 -EQARKTLGGFDVIVNNAG 87 (255)
T ss_dssp -HHHHHHTTCCCEEEECCC
T ss_pred -HHHHHHhCCccEEEeccc
Confidence 333444444446777653
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.90 E-value=0.00069 Score=51.60 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=61.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-----CCH-HHHhh-----cCCeEEEEeCC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSP-DEVAA-----SCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-----~~~-~~~~~-----~aDivv~~~p~ 137 (290)
+.+|.|+|+ |.+|...++.++..|. +|++.++++++.+.+++.|...+ .+. ++..+ ..|+++.++..
T Consensus 28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~ 107 (170)
T d1jvba2 28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNS 107 (170)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCC
T ss_pred CCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhccccc
Confidence 688999995 9999999999998884 89999999988887777664211 222 22222 26888888765
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEec
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
..... ..++.++++..++.++
T Consensus 108 ~~~~~-------~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 108 EKTLS-------VYPKALAKQGKYVMVG 128 (170)
T ss_dssp HHHHT-------TGGGGEEEEEEEEECC
T ss_pred chHHH-------hhhhhcccCCEEEEec
Confidence 33332 2356677887777665
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.85 E-value=0.00092 Score=47.67 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=32.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
+++|.|||.|.+|..+|..|...|.+|+++.+.+.
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 58999999999999999999999999999998764
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.85 E-value=0.00044 Score=52.11 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=45.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCCccch--hhHH----hC------CCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSKC--DPLI----SL------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~~~~~--~~~~----~~------g~~~~~~~~~~~~~aDi 130 (290)
.+||.|||+ |++|..++-.|...+. ++..+|.++... +.+. .. .....++..+.++++|+
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 82 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence 689999995 9999999999875432 466777654322 1111 11 12344677889999999
Q ss_pred EEEEeC
Q 022909 131 TFAMLA 136 (290)
Q Consensus 131 vv~~~p 136 (290)
|+++..
T Consensus 83 VVitag 88 (154)
T d5mdha1 83 AILVGS 88 (154)
T ss_dssp EEECCS
T ss_pred EEEecc
Confidence 999864
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.83 E-value=0.00094 Score=48.49 Aligned_cols=71 Identities=11% Similarity=0.177 Sum_probs=50.4
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC----CCHHHH----hhcCCeEEEEeCChhHHHHH
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPDEV----AASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~----~~~aDivv~~~p~~~~~~~~ 144 (290)
.|-|+|+|++|+.+++.|. |.+|.+.+.++++.+.+...|+... .+.+-+ +.+++.++++.+.+.....+
T Consensus 2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~ 79 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHC 79 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHHH
Confidence 4889999999999999995 5678888999888877777665432 222222 34688999888765554443
Q ss_pred h
Q 022909 145 A 145 (290)
Q Consensus 145 ~ 145 (290)
.
T Consensus 80 ~ 80 (129)
T d2fy8a1 80 I 80 (129)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.0011 Score=50.61 Aligned_cols=88 Identities=17% Similarity=0.084 Sum_probs=58.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-----CCHHHHhh------cCCeEEEEeCCh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA------SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~------~aDivv~~~p~~ 138 (290)
+.+|.|+|. |.+|....+.++..|.+|++.++++++.+.+++.|...+ .++.+.+. ..|+|+-++. .
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g-~ 107 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA-N 107 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH-H
T ss_pred CCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc-H
Confidence 689999995 999999999999999999999988877777777665321 22322221 2466665543 2
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+.... .++.++++..++.++.
T Consensus 108 ~~~~~-------~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 108 VNLSK-------DLSLLSHGGRVIVVGS 128 (174)
T ss_dssp HHHHH-------HHHHEEEEEEEEECCC
T ss_pred HHHHH-------HHhccCCCCEEEEEec
Confidence 22221 2455666666666643
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.81 E-value=0.00098 Score=48.01 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=32.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
.+++.|||.|.||..+|..|...|.+|+++.+++.
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence 58999999999999999999999999999998764
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.002 Score=48.08 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=48.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhh----HHhCCCccC----CCHHHH----hhcCCeEEEEeCChh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP----LISLGAKYQ----PSPDEV----AASCDVTFAMLADPE 139 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~----~~~~g~~~~----~~~~~~----~~~aDivv~~~p~~~ 139 (290)
-.|-|+|+|++|+.+++.|...|.+|.+.+.++++... ....++.+. .+.+-+ ++++|.|+++++.+.
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~ 83 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA 83 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHH
Confidence 46999999999999999999999999999998764322 222344321 122211 346888888887654
Q ss_pred HHH
Q 022909 140 SAM 142 (290)
Q Consensus 140 ~~~ 142 (290)
...
T Consensus 84 ~n~ 86 (153)
T d1id1a_ 84 DNA 86 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.77 E-value=0.0071 Score=45.93 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=40.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK 116 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~ 116 (290)
+.+|.|+|+|.+|...+..++..|. +|++.++++++.+..++.|..
T Consensus 29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~ 75 (176)
T d2jhfa2 29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 75 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe
Confidence 7899999999999999999999985 899999999988877776643
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.77 E-value=0.0032 Score=52.06 Aligned_cols=107 Identities=10% Similarity=0.112 Sum_probs=66.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEe-CC-----c-----cchhhHHhC-CC------ccCCCHHHHhh-cCCeE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWN-RT-----K-----SKCDPLISL-GA------KYQPSPDEVAA-SCDVT 131 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d-~~-----~-----~~~~~~~~~-g~------~~~~~~~~~~~-~aDiv 131 (290)
++||.|-|+|++|..+|+.|...|.+|+.++ .+ + +.+...... +. ... +.++++. +|||+
T Consensus 36 gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~DIl 114 (293)
T d1hwxa1 36 DKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKI-YEGSILEVDCDIL 114 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCB-CCSCGGGCCCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeeccccccc-CCcccccCCccEE
Confidence 7999999999999999999999999987554 21 1 122222221 10 111 2234444 79999
Q ss_pred EEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 132 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+-|.- .+.+ +.+..+.++. .+|+-.++++. +.++ .+.|.++|+.++.
T Consensus 115 iPaA~-----~~~I--~~~~a~~l~a-k~I~EgAN~P~-t~eA-~~~L~~~gI~viP 161 (293)
T d1hwxa1 115 IPAAS-----EKQL--TKSNAPRVKA-KIIAEGANGPT-TPQA-DKIFLERNIMVIP 161 (293)
T ss_dssp EECSS-----SSCB--CTTTGGGCCC-SEEECCSSSCB-CHHH-HHHHHHTTCEEEC
T ss_pred eeccc-----cccc--cHHHHHHHhh-CEEeccCCCCC-Ccch-HHHHHHCCCEEeC
Confidence 86642 3444 4445555643 45666656554 4433 5788899988875
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=96.75 E-value=0.001 Score=54.54 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=35.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|++++.++..
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~ 46 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAE 46 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 788889885 77999999999999999999999987665543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.75 E-value=0.0046 Score=46.93 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=39.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK 116 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~ 116 (290)
+.+|.|+|+|.+|...++.++..|. .|++.++++++.+..++.|..
T Consensus 29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~ 75 (176)
T d2fzwa2 29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT 75 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc
Confidence 6899999999999999999999996 677888888887777776643
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.73 E-value=0.00093 Score=53.62 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=31.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
.+||.|||.|-.|.+.|..|++.|++|+++++..
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 6899999999999999999999999999999853
|
| >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.70 E-value=2.7e-06 Score=62.17 Aligned_cols=22 Identities=14% Similarity=-0.034 Sum_probs=19.1
Q ss_pred eEEEEcccHhHHHHHHHHHHCC
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAG 94 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g 94 (290)
+++|+|+|+||+.+|+++.++|
T Consensus 100 ~l~i~G~G~iG~~iA~r~~a~G 121 (121)
T d1qp8a2 100 NLITYATGGRPRNIAKREDYIG 121 (121)
T ss_dssp HHHHHHTTSCCSCBCCGGGTC-
T ss_pred CEEEEcCCHHHHHHHHHHHhcC
Confidence 3789999999999999998876
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.70 E-value=0.001 Score=51.30 Aligned_cols=92 Identities=17% Similarity=0.137 Sum_probs=55.9
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHC-CCeEE-EEeCCc--cchhhHHh-----CCC-----ccCCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKA-GCDVT-VWNRTK--SKCDPLIS-----LGA-----KYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~-g~~V~-~~d~~~--~~~~~~~~-----~g~-----~~~~~~~~~~~~aDivv~~~p 136 (290)
+||+|+| .|..|+.+.+.|..+ .+++. ++.+.. ...+.+.+ .+. ....+.+....+.|+++.++|
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp 81 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA 81 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence 7899999 699999999999987 45664 333221 11111211 011 112344445678999999987
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEecCCChh
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~ 170 (290)
.... .... ....+.+..+||.|...-.
T Consensus 82 ~~~s-~~~~------~~~~~~~~~vIDlSadfRl 108 (179)
T d2g17a1 82 HEVS-HDLA------PQFLQAGCVVFDLSGAFRV 108 (179)
T ss_dssp HHHH-HHHH------HHHHHTTCEEEECSSTTSS
T ss_pred chhH-HHHh------hhhhhcCceeecccccccc
Confidence 6433 2322 2234578899999865443
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.69 E-value=0.00032 Score=52.90 Aligned_cols=90 Identities=13% Similarity=0.160 Sum_probs=53.6
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCC---eEEEEeCCccchhhHHh--CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPLIS--LGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~---~V~~~d~~~~~~~~~~~--~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
-||||||+ |..|+.+.+.|..+.+ ++.....+....+.... .........++...+.|++++++|... .....
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~-s~~~~ 80 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSST-SAKYA 80 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHH-HHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccc-hhhHH
Confidence 57999996 9999999999988754 34444322211111111 011112233445678999999987533 33333
Q ss_pred cccccccccCCCCCEEEEecCCC
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~ 168 (290)
.+..+++..+||.|.--
T Consensus 81 ------~~~~~~~~~VIDlSsdf 97 (154)
T d2gz1a1 81 ------PYAVKAGVVVVDNTSYF 97 (154)
T ss_dssp ------HHHHHTTCEEEECSSTT
T ss_pred ------hhhccccceehhcChhh
Confidence 23345788999998543
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.0015 Score=50.43 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=33.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
+++|.|||.|..|...|..|+..|++|+++++++.-
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI 78 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence 799999999999999999999999999999987653
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.68 E-value=0.0013 Score=47.31 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=31.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~ 103 (290)
++++.|||.|.||..+|..|+.+|.+|+++.++
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 578999999999999999999999999999875
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.66 E-value=0.0016 Score=46.66 Aligned_cols=35 Identities=29% Similarity=0.683 Sum_probs=32.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
++++.|||.|.||..+|..|+.+|.+|++..++..
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence 68999999999999999999999999999987754
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.65 E-value=0.0015 Score=53.33 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=51.7
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEe--CChhHHHHHhcc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~--p~~~~~~~~~~~ 147 (290)
+|.+.|-| .+.||+++|+.|++.|++|.+++|++++.++..+ ++.+. ..++..+.+ ...++++.++
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~-------~l~~~--g~~~~~~~~Dvs~~~~v~~~~-- 70 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLK-------ELREA--GVEADGRTCDVRSVPEIEALV-- 70 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHT--TCCEEEEECCTTCHHHHHHHH--
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------HHHhc--CCcEEEEEeecCCHHHHHHHH--
Confidence 34445556 5789999999999999999999999877665433 11111 123333322 3456666666
Q ss_pred cccccccCCCCCEEEEecC
Q 022909 148 KHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~ 166 (290)
++..+...+=.++||.+.
T Consensus 71 -~~~~~~~g~iDilVnnAG 88 (257)
T d2rhca1 71 -AAVVERYGPVDVLVNNAG 88 (257)
T ss_dssp -HHHHHHTCSCSEEEECCC
T ss_pred -HHHHHHhCCCCEEEeccc
Confidence 334444444446777753
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.65 E-value=0.0044 Score=47.79 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=43.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHh-------CC-CccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-------LG-AKYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~-------~g-~~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
+.|||||| .|..|+.+.+.|..+- +++.....+...-..+.+ .. .......++...++|+++.++|....
T Consensus 5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s 84 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT 84 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence 57899999 5999999999998864 465544322211122221 01 11122334556789999999987443
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.0016 Score=46.36 Aligned_cols=35 Identities=17% Similarity=0.442 Sum_probs=32.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
+++|.|||.|.+|..+|..|+..|.+|+++++.+.
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence 58999999999999999999999999999998764
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0028 Score=51.69 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=55.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEe--CChhHHHHHhcc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~--p~~~~~~~~~~~ 147 (290)
+|++.|.| .+.||.++|+.|++.|++|.+++|++++.+++.+. +.+.-...+++.+.+ ...++++.++
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~Dls~~~~v~~~v-- 80 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAE-------CKSAGYPGTLIPYRCDLSNEEDILSMF-- 80 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCSSEEEEEECCTTCHHHHHHHH--
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCceEEEEEccCCCHHHHHHHH--
Confidence 78888888 58999999999999999999999998776655431 111111123333333 3456666666
Q ss_pred cccccccCCCCCEEEEecCC
Q 022909 148 KHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~ 167 (290)
+.+.+...+=.++||.+..
T Consensus 81 -~~~~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 81 -SAIRSQHSGVDICINNAGL 99 (257)
T ss_dssp -HHHHHHHCCCSEEEECCCC
T ss_pred -HHHHHhcCCCCEEEecccc
Confidence 2333333333467777643
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.60 E-value=0.0013 Score=46.91 Aligned_cols=35 Identities=20% Similarity=0.473 Sum_probs=32.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
.++|.|||.|.+|..+|..|+..|.+|+++.|.+.
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence 58999999999999999999999999999998753
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=96.60 E-value=0.0021 Score=52.44 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=35.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|++++.++..
T Consensus 8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~ 49 (259)
T d2ae2a_ 8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCL 49 (259)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 788888885 67999999999999999999999987765543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.58 E-value=0.0011 Score=51.10 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=33.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSK 106 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~ 106 (290)
++||+|||.|..|...|..|+..|+ +|+++++++.-
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~ 40 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV 40 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence 6999999999999999999999998 59999988654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.57 E-value=0.0014 Score=55.81 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=43.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-------CCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------GAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-------g~~~~~~~~~~~~~aDivv~~~ 135 (290)
.|||.|.| .|-||+.+++.|.+.|++|++.|+........... .+.....+.++++..|.|+-+.
T Consensus 15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 87 (363)
T d2c5aa1 15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 87 (363)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence 79999998 69999999999999999999998754321111111 1111123344556789877544
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.56 E-value=0.0022 Score=51.99 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=52.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|++++.+.+.+. +-..+..+..=+...++.+.++ +
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~---~ 72 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAE----------LADAARYVHLDVTQPAQWKAAV---D 72 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------TGGGEEEEECCTTCHHHHHHHH---H
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hhCcceEEEeecCCHHHHHHHH---H
Confidence 788888885 7899999999999999999999998776655431 1111111111123445566666 3
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
+..+...+=.++||.+.
T Consensus 73 ~~~~~~g~idilinnAG 89 (244)
T d1nffa_ 73 TAVTAFGGLHVLVNNAG 89 (244)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHhCCCeEEEECCc
Confidence 33444444456777753
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.003 Score=51.04 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=52.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+|++-|-| .+.||+++|+.|.+.|++|.+++|++++.+++.+. +-.++..+..=+...++.+.++ +
T Consensus 4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~---~ 70 (243)
T d1q7ba_ 4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDY----------LGANGKGLMLNVTDPASIESVL---E 70 (243)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHH---H
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH----------hCCCCcEEEEEecCHHHhhhhh---h
Confidence 78888888 58899999999999999999999998776655431 1111222222233455666666 3
Q ss_pred cccccCCCCCEEEEec
Q 022909 150 GAASGMGPGKGYVDVS 165 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s 165 (290)
+..+...+=.++||.+
T Consensus 71 ~~~~~~g~iDilVnnA 86 (243)
T d1q7ba_ 71 KIRAEFGEVDILVNNA 86 (243)
T ss_dssp HHHHHTCSCSEEEECC
T ss_pred hhhcccCCcceehhhh
Confidence 3344443434667765
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=96.52 E-value=0.0048 Score=50.23 Aligned_cols=85 Identities=13% Similarity=0.162 Sum_probs=54.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEe--CChhHHHHHhcc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~--p~~~~~~~~~~~ 147 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|++++.+...+ .+.+.-....++.+.+ ...++++.++
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~-------~~~~~~~~~~~~~~~~Dvt~~~~v~~~~-- 74 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKA-------AVLETAPDAEVLTTVADVSDEAQVEAYV-- 74 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHHCTTCCEEEEECCTTSHHHHHHHH--
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------HHHhhCCCCeEEEEeccCCCHHHHHHHH--
Confidence 788888885 789999999999999999999999877655433 1112122334444433 2445666666
Q ss_pred cccccccCCCCCEEEEec
Q 022909 148 KHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s 165 (290)
++..+...+=.++||.+
T Consensus 75 -~~~~~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 75 -TATTERFGRIDGFFNNA 91 (258)
T ss_dssp -HHHHHHHSCCSEEEECC
T ss_pred -HHHHHHhCCCCEEEECC
Confidence 23333333434677765
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.51 E-value=0.0016 Score=48.56 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=31.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~ 103 (290)
+++|.|||.|.+|..-++.|..+|.+|+++++.
T Consensus 13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 899999999999999999999999999999764
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=96.50 E-value=0.0034 Score=51.96 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=35.3
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
+|++.|.| .|.||+++|+.|++.|++|++.+|+.++.++.
T Consensus 25 gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~ 65 (294)
T d1w6ua_ 25 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKAT 65 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence 78888888 69999999999999999999999998765544
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=96.46 E-value=0.0049 Score=50.33 Aligned_cols=84 Identities=12% Similarity=0.009 Sum_probs=51.5
Q ss_pred CCeEEEEcc-c--HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLGM-G--IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~-G--~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
+|++.|.|. | .||.++|+.|+..|++|++.+|+++..+..++ +.+....+.++..-+....+...++
T Consensus 5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~--------l~~~~~~~~~~~~d~~~~~~~~~~~-- 74 (274)
T d2pd4a1 5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRP--------IAQELNSPYVYELDVSKEEHFKSLY-- 74 (274)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHH--------HHHHTTCCCEEECCTTCHHHHHHHH--
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------HHhhCCceeEeeecccchhhHHHHH--
Confidence 899999996 5 49999999999999999999998643333222 2222334444444444445555555
Q ss_pred cccccccCCCCCEEEEec
Q 022909 148 KHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s 165 (290)
++..+...+-.++||..
T Consensus 75 -~~~~~~~g~id~lV~na 91 (274)
T d2pd4a1 75 -NSVKKDLGSLDFIVHSV 91 (274)
T ss_dssp -HHHHHHTSCEEEEEECC
T ss_pred -HHHHHHcCCCCeEEeec
Confidence 22333343334455444
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.45 E-value=0.0022 Score=49.17 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=38.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|.| .|.+|...++.++..|++|++..+++++.+.+++.|.
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga 71 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV 71 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCcccccchhhccccccceeeecccccccccccccc
Confidence 68899988 5999999999999999999999988877776666554
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.42 E-value=0.0028 Score=51.49 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=34.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
+|.+.|.|. +.||+++|+.|++.|++|.+++|++++.++..
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~ 51 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVV 51 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence 677777785 78999999999999999999999987765543
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.42 E-value=0.0019 Score=52.00 Aligned_cols=35 Identities=37% Similarity=0.518 Sum_probs=32.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
.+||.|||.|.-|...|..|++.|++|.+++++++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 68999999999999999999999999999998764
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.0022 Score=46.21 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=32.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
.+++.|||.|.+|..+|..|+..|.+|+++.|++.
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 48999999999999999999999999999999754
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=96.40 E-value=0.003 Score=51.45 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=36.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|++++.++..+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 47 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAR 47 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 899999985 679999999999999999999999877655443
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.40 E-value=0.0022 Score=52.39 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=35.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
+|++.|.|. +.||+++|+.|++.|++|.+++|++++.++..
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~ 49 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECL 49 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 788888885 77999999999999999999999987766543
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.38 E-value=0.0017 Score=46.68 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=33.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
++++.|||.|.+|..+|..+.++|.+|++..|++.-
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI 60 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence 589999999999999999999999999999987654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.0019 Score=52.59 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=34.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
+|++.|.|. +.||+++|+.|+..|++|.+.+|++++.++..
T Consensus 11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~ 52 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVV 52 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 677777774 88999999999999999999999987665543
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=96.37 E-value=0.002 Score=52.45 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=27.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVW 100 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~ 100 (290)
++||.|-|+|++|+.+++.|...|.+|+..
T Consensus 36 g~~v~IQGfGnVG~~~a~~L~e~Gakvvav 65 (255)
T d1bgva1 36 GKTVALAGFGNVAWGAAKKLAELGAKAVTL 65 (255)
T ss_dssp TCEEEECCSSHHHHHHHHHHHHHTCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 799999999999999999999999988643
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.36 E-value=0.013 Score=44.25 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=40.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK 116 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~ 116 (290)
+.+|.|+|.|.+|...+..++..|. +|++.|+++++.+..++.|..
T Consensus 29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd 75 (175)
T d1cdoa2 29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT 75 (175)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred CCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc
Confidence 6889999999999999999988876 789999999998888887753
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.0031 Score=51.23 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=36.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|++++.+.+.+
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~ 48 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQ 48 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 899999985 899999999999999999999999877666544
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.30 E-value=0.0032 Score=45.09 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=32.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
.++|.|||.|.+|..+|..|+..|.+|+++++++.
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 58999999999999999999999999999998764
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.30 E-value=0.0026 Score=45.02 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=32.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
++++.|||.|.+|..+|..|+..|.+|+++.+.+.
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence 58999999999999999999999999999988754
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=96.30 E-value=0.0023 Score=52.65 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=47.7
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchh--------hHHhCCCccC-------CCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD--------PLISLGAKYQ-------PSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~--------~~~~~g~~~~-------~~~~~~~~~aDivv~~ 134 (290)
++||.|+| +|.||+.+++.|.+.|++|++.+|++.... .+...++... .++.+.++.++.++.+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~ 82 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 82 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence 68899999 599999999999999999999998754321 1122333211 2345567788988887
Q ss_pred eCC
Q 022909 135 LAD 137 (290)
Q Consensus 135 ~p~ 137 (290)
.+.
T Consensus 83 ~~~ 85 (312)
T d1qyda_ 83 LAG 85 (312)
T ss_dssp CCC
T ss_pred hhh
Confidence 653
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.29 E-value=0.0017 Score=51.21 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=45.3
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCe--EEEEeCCccchhhHHhCCCc-------cCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCD--VTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~--V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivv~~~p 136 (290)
.+||.|.| .|.||+.+++.|.+.|++ |....|++++...+.. +++ ...+..++++++|.|+.+..
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~ 77 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITDADSINPAFQGIDALVILTS 77 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeeccccccccccccceeeEEEEe
Confidence 58999999 699999999999999976 4455677665443322 121 12244566788999886653
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0042 Score=50.13 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=67.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CCCccCCCHHHHhh--cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVAA--SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~aDivv~~~p~~~ 139 (290)
..+|.|||+|.+|..++..|...|. +++++|.+.=....+.. .|...+..+.+.++ ..++-+...+...
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~~ 109 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALL 109 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhhh
Confidence 6899999999999999999999998 78999976433222221 12222222222222 3566666665432
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccC
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~ 192 (290)
..... ...+....++|++. -.......+.+...+.++.++.....
T Consensus 110 ~~~~~-------~~~~~~~divid~~-d~~~~~~~in~~~~~~~ip~i~g~~~ 154 (247)
T d1jw9b_ 110 DDAEL-------AALIAEHDLVLDCT-DNVAVRNQLNAGCFAAKVPLVSGAAI 154 (247)
T ss_dssp CHHHH-------HHHHHTSSEEEECC-SSHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred hhccc-------cccccccceeeecc-chhhhhhhHHHHHHHhCCCccccccc
Confidence 22221 12233456777763 33444456666676778887765443
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.0032 Score=50.22 Aligned_cols=67 Identities=22% Similarity=0.221 Sum_probs=46.6
Q ss_pred CCCeEEEEc-ccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHhC-------CCccCCCHHHHhhcCCeEEEEeC
Q 022909 70 LPGRIGFLG-MGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISL-------GAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 70 ~~~~IgiiG-~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~~-------g~~~~~~~~~~~~~aDivv~~~p 136 (290)
++++|.|.| +|.+|+.+.+.|...|. +|++.+|++.+....... .....+++.+.++.+|+++.+..
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~ 89 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG 89 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccc
Confidence 368999998 69999999999998884 899999976543221111 11122345566778888887664
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=96.27 E-value=0.0026 Score=51.88 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=53.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEe--CChhHHHHHhcc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~--p~~~~~~~~~~~ 147 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|+.++.++..+ ++.+.. ..++..+.+ ...++.+.++
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~-------~~~~~~-g~~~~~~~~Dv~~~~~v~~~~-- 78 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTE-------KVGKEF-GVKTKAYQCDVSNTDIVTKTI-- 78 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHH-------HHHHHH-TCCEEEEECCTTCHHHHHHHH--
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------HHHHHh-CCceEEEEccCCCHHHHHHHH--
Confidence 788888885 679999999999999999999999877655432 111111 233433333 3445566665
Q ss_pred cccccccCCCCCEEEEecC
Q 022909 148 KHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~ 166 (290)
++..+...+=.++||.+.
T Consensus 79 -~~~~~~~g~iDilVnnAg 96 (260)
T d1h5qa_ 79 -QQIDADLGPISGLIANAG 96 (260)
T ss_dssp -HHHHHHSCSEEEEEECCC
T ss_pred -HHHHHHhCCCcEeccccc
Confidence 233333433346777653
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.002 Score=52.99 Aligned_cols=86 Identities=13% Similarity=0.072 Sum_probs=52.9
Q ss_pred CCeEEEE--cccHhHHHHHHHHHH-CCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFL--GMGIMGTPMAQNLLK-AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~Igii--G~G~iG~~la~~l~~-~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
+|+|+|| |.+.||.++|+.|++ .|.+|++++|+.++.++..+. +.+.-.++.++.+=+...++++.++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dvs~~~sv~~~~-- 72 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQ-------LQAEGLSPRFHQLDIDDLQSIRALR-- 72 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHH-------HHHTTCCCEEEECCTTCHHHHHHHH--
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEEecCCHHHHHHHH--
Confidence 7999988 679999999999987 489999999998876654431 1111112222322234445666655
Q ss_pred cccccccCCCCCEEEEecC
Q 022909 148 KHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~ 166 (290)
+++.+...+=.++||.+.
T Consensus 73 -~~~~~~~g~iDiLVnNAG 90 (275)
T d1wmaa1 73 -DFLRKEYGGLDVLVNNAG 90 (275)
T ss_dssp -HHHHHHHSSEEEEEECCC
T ss_pred -HHHHHhcCCcEEEEEcCC
Confidence 223333323246777754
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=96.26 E-value=0.0033 Score=53.14 Aligned_cols=65 Identities=22% Similarity=0.169 Sum_probs=48.4
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC---------------CCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL---------------GAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~---------------g~~~~~~~~~~~~~aDivv~~ 134 (290)
+++|.|.| .|.||+.+++.|...|++|.+..|+.++...+... .+.-..++++++.++|.|+.+
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~~ 90 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHI 90 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEEC
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhhh
Confidence 79999998 59999999999999999999988887655443220 122223566778889987754
Q ss_pred e
Q 022909 135 L 135 (290)
Q Consensus 135 ~ 135 (290)
.
T Consensus 91 a 91 (342)
T d1y1pa1 91 A 91 (342)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.012 Score=47.27 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=36.8
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
+|++.|.| .+.||+++|+.|++.|++|.+.+|++++.+++.+
T Consensus 7 GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~ 49 (244)
T d1pr9a_ 7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 79999998 4889999999999999999999999877665544
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=96.21 E-value=0.0056 Score=49.29 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=36.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
+|++.|.|. +.||+++|+.|...|++|.+.+|++++.++..+
T Consensus 5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~ 47 (242)
T d1ulsa_ 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAE 47 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 688888885 779999999999999999999999877666544
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0073 Score=50.20 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=56.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHH---hhcCCeEEEEe--CChhHHHHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEV---AASCDVTFAML--ADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~---~~~aDivv~~~--p~~~~~~~~ 144 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|+.++.+...+. +..- ....+++.+.+ ...++++.+
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~e-------l~~~~~~~~~~~~~~~~~Dvs~~~~v~~~ 84 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADE-------LQANLPPTKQARVIPIQCNIRNEEEVNNL 84 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTSCTTCCCCEEEEECCTTCHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhhhccccCceEEEEeccCCCHHHHHHH
Confidence 788888885 7899999999999999999999998776554331 1110 11345555444 244566666
Q ss_pred hcccccccccCCCCCEEEEecC
Q 022909 145 ACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+ ++..+...+=.++||.+.
T Consensus 85 ~---~~~~~~~G~iDiLVnnAg 103 (297)
T d1yxma1 85 V---KSTLDTFGKINFLVNNGG 103 (297)
T ss_dssp H---HHHHHHHSCCCEEEECCC
T ss_pred H---HHHHHHhCCeEEEEeecc
Confidence 6 333444444457777754
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.20 E-value=0.0076 Score=48.43 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=66.6
Q ss_pred CCeEEEEcccHhHHHHHHHHH-HCCCeEEEE-eCCc-------cchhhHHh----C-------CCccCCCHHHHhh-cCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL-KAGCDVTVW-NRTK-------SKCDPLIS----L-------GAKYQPSPDEVAA-SCD 129 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~-~~g~~V~~~-d~~~-------~~~~~~~~----~-------g~~~~~~~~~~~~-~aD 129 (290)
++||.|-|+|++|..+|+.|. ..|.+|+.. |.+. -..+.+.+ . +.... +.++++. +||
T Consensus 32 g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~D 110 (239)
T d1gtma1 32 GKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLELEVD 110 (239)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEE-CHHHHHHSCCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeee-ccccccccccc
Confidence 899999999999999999986 468887644 4331 11111111 1 22223 4556654 699
Q ss_pred eEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 130 ivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
|++-|.-. +.+ +++..+.++- .+|+-.+.++. +.++ .+.|.++++.|+.
T Consensus 111 Il~PcA~~-----~~I--~~~~a~~i~a-k~I~e~AN~p~-t~ea-~~~L~~rgI~~iP 159 (239)
T d1gtma1 111 VLAPAAIE-----EVI--TKKNADNIKA-KIVAEVANGPV-TPEA-DEILFEKGILQIP 159 (239)
T ss_dssp EEEECSCS-----CCB--CTTGGGGCCC-SEEECCSSSCB-CHHH-HHHHHHTTCEEEC
T ss_pred EEeecccc-----ccc--cHHHHHhccc-cEEEecCCCCC-CHHH-HHHHHHCCCEEec
Confidence 98866532 444 4444555543 46666666665 3333 6788889988864
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=96.20 E-value=0.0042 Score=51.08 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=35.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
+|++.|-|. +.||+++|+.|++.|++|.+.+|++++.+++.
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~ 46 (276)
T d1bdba_ 5 GEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELE 46 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 788888885 89999999999999999999999987665543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.19 E-value=0.0036 Score=50.79 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=53.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEe--CChhHHHHHhcc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~--p~~~~~~~~~~~ 147 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|+.++.++..+ ++.+.. ..+++.+.+ ...++++.++
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~-------~l~~~~-g~~~~~~~~Dv~~~~~v~~~~-- 74 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQ-------KLTEKY-GVETMAFRCDVSNYEEVKKLL-- 74 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHHH-CCCEEEEECCTTCHHHHHHHH--
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------HHHHHh-CCcEEEEEccCCCHHHHHHHH--
Confidence 788889985 779999999999999999999999876554332 111111 234443333 2445556665
Q ss_pred cccccccCCCCCEEEEec
Q 022909 148 KHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s 165 (290)
++..+...+=.++||.+
T Consensus 75 -~~~~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 75 -EAVKEKFGKLDTVVNAA 91 (251)
T ss_dssp -HHHHHHHSCCCEEEECC
T ss_pred -HHHHHHcCCCCEEEECC
Confidence 23333333334677765
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.18 E-value=0.0044 Score=47.40 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=45.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHH---CCC----eEEEEeCCccc--hhhHH----hC------CCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLK---AGC----DVTVWNRTKSK--CDPLI----SL------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~---~g~----~V~~~d~~~~~--~~~~~----~~------g~~~~~~~~~~~~~aDi 130 (290)
..||.|+|+ |.||..++-.|+. +|. .+.++|..... .+... +. .....++..+.++++|+
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv 103 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 103 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence 468999996 9999999999986 342 55667765432 11111 11 22445788889999999
Q ss_pred EEEEeC
Q 022909 131 TFAMLA 136 (290)
Q Consensus 131 vv~~~p 136 (290)
|++...
T Consensus 104 Vvi~ag 109 (175)
T d7mdha1 104 ALLIGA 109 (175)
T ss_dssp EEECCC
T ss_pred EEEeec
Confidence 998864
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=96.17 E-value=0.0042 Score=52.50 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=48.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh--HHh-CCCcc-----CC---CHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP--LIS-LGAKY-----QP---SPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~--~~~-~g~~~-----~~---~~~~~~~~aDivv~~~p~ 137 (290)
+|+|.|+| +|.||+.+++.|.+.|++|.+..|++.+... +.. .++.. .+ .++.++..+|.++...+.
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~ 81 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 81 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence 69999999 5999999999999999999999998765432 222 23321 12 144567788988877654
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.16 E-value=0.0044 Score=44.44 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=32.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
.++|.|||.|.+|..+|..|+..|.+|++.++.+.
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence 58999999999999999999999999999988754
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=96.14 E-value=0.0027 Score=51.27 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=53.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEE--eCChhHHHHHhcc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~--~p~~~~~~~~~~~ 147 (290)
+|++.|.|. +.||+++|+.|...|++|.+.+|+.++.++..+. . +.+++.+. +..+++.+.++
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-~-----------~~~~~~~~~Dls~~~~i~~~~-- 70 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA-L-----------EAEAIAVVADVSDPKAVEAVF-- 70 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-C-----------CSSEEEEECCTTSHHHHHHHH--
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-c-----------CCceEEEEecCCCHHHHHHHH--
Confidence 788999985 6699999999999999999999998766554331 1 12233322 23456666666
Q ss_pred cccccccCCCCCEEEEec
Q 022909 148 KHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s 165 (290)
+++.+...+=.++||.+
T Consensus 71 -~~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 71 -AEALEEFGRLHGVAHFA 87 (241)
T ss_dssp -HHHHHHHSCCCEEEEGG
T ss_pred -HHHHHHhCCccEecccc
Confidence 33444444555677765
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.14 E-value=0.0093 Score=47.75 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=66.1
Q ss_pred CCeEEEEcccHhHHHHHHHHH-HCCCeEEEEe-CC-----cc--chhhH---Hh-C-------CCccCCCHHHHhh-cCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL-KAGCDVTVWN-RT-----KS--KCDPL---IS-L-------GAKYQPSPDEVAA-SCD 129 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~-~~g~~V~~~d-~~-----~~--~~~~~---~~-~-------g~~~~~~~~~~~~-~aD 129 (290)
+++|.|-|+|++|+.+|+.|. ..|.+|+..+ .+ ++ ....+ .+ . +.... +.++++. +||
T Consensus 31 g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D 109 (234)
T d1b26a1 31 KATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVD 109 (234)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEE-CHHHHHTSCCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceee-ccccccccccc
Confidence 799999999999999999996 5799887554 21 11 11111 11 1 11222 4566666 799
Q ss_pred eEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 130 ivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
|++-|--. +.+ +++..+.++. .+|+-.+.++. +.+ -.+.|.++|+.|+.
T Consensus 110 I~~PcA~~-----~~I--~~~~a~~l~~-~~I~e~AN~p~-t~~-a~~~L~~rgI~~~P 158 (234)
T d1b26a1 110 ILVPAALE-----GAI--HAGNAERIKA-KAVVEGANGPT-TPE-ADEILSRRGILVVP 158 (234)
T ss_dssp EEEECSCT-----TCB--CHHHHTTCCC-SEEECCSSSCB-CHH-HHHHHHHTTCEEEC
T ss_pred eeecchhc-----ccc--cHHHHHHhhh-ceEeecCCCCC-CHH-HHHHHHHCCeEEec
Confidence 98866422 333 3334555554 45666656554 343 35778889988864
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.14 E-value=0.0038 Score=50.77 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=35.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
+|++-|.|. +.||+++|+.|++.|++|.+.+|+.++.+...
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~ 46 (256)
T d1k2wa_ 5 GKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATA 46 (256)
T ss_dssp TEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 688888885 89999999999999999999999987665544
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=96.13 E-value=0.0085 Score=48.45 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=53.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEe--CChhHHHHHhcc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~--p~~~~~~~~~~~ 147 (290)
+|++.|.| .+.||+++|+.|++.|++|.+.+|++++.+...+. +-...++..+.+ ...++.+.++
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~~~Dv~~~~~v~~~~-- 73 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKS----------VGTPDQIQFFQHDSSDEDGWTKLF-- 73 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCCTTTEEEEECCTTCHHHHHHHH--
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hCCCCcEEEEEccCCCHHHHHHHH--
Confidence 78888888 58899999999999999999999998776654431 101123333332 3445566666
Q ss_pred cccccccCCCCCEEEEecC
Q 022909 148 KHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~ 166 (290)
++..+...+=.++||.+.
T Consensus 74 -~~~~~~~G~iDiLVnnAg 91 (251)
T d1zk4a1 74 -DATEKAFGPVSTLVNNAG 91 (251)
T ss_dssp -HHHHHHHSSCCEEEECCC
T ss_pred -HHHHHHhCCceEEEeccc
Confidence 233333333347777763
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.13 E-value=0.0027 Score=51.62 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=31.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
+|||.|||.|.-|...|..|++.|++|+++++++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3889999999999999999999999999999764
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=96.12 E-value=0.0077 Score=48.70 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=32.1
Q ss_pred CCeEEEEccc---HhHHHHHHHHHHCCCeEEEEeCCccch
Q 022909 71 PGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKSKC 107 (290)
Q Consensus 71 ~~~IgiiG~G---~iG~~la~~l~~~g~~V~~~d~~~~~~ 107 (290)
+|++.|.|.+ .||+++|+.|++.|++|.+.+|+.+..
T Consensus 8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~ 47 (256)
T d1ulua_ 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLR 47 (256)
T ss_dssp TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 7899999974 599999999999999999999886543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=96.10 E-value=0.0035 Score=50.94 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=35.4
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
+|++.|.| .+.||+++|+.|+..|++|.+.+|++++.+++.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~ 48 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAA 48 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 68888888 4779999999999999999999999876665443
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=96.08 E-value=0.0039 Score=44.94 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=32.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
++++.|||.|.||..+|..+..+|.+|++..+.+.
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 58999999999999999999999999999998764
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=96.07 E-value=0.0037 Score=51.00 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=46.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH---------HhCCCccC-------CCHHHHhhcCCeEEE
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL---------ISLGAKYQ-------PSPDEVAASCDVTFA 133 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~---------~~~g~~~~-------~~~~~~~~~aDivv~ 133 (290)
++||.|+|. |.+|+.+++.|.+.|++|++.+|++...... ...++... ....+.++.+|.++.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~ 82 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 82 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeee
Confidence 689999995 9999999999999999999999976542211 11223211 224456678888876
Q ss_pred EeC
Q 022909 134 MLA 136 (290)
Q Consensus 134 ~~p 136 (290)
+..
T Consensus 83 ~~~ 85 (307)
T d1qyca_ 83 TVG 85 (307)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.04 E-value=0.0041 Score=44.48 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=32.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
.+++.|||.|.+|..+|..|...|.+|+++.+++.
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 48899999999999999999999999999998754
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0062 Score=49.77 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=36.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
+|++.|.|. +.||+++|+.|++.|++|++.+|+.++.++..
T Consensus 14 GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~ 55 (269)
T d1xu9a_ 14 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVV 55 (269)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 899999985 67999999999999999999999988766554
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.99 E-value=0.0049 Score=43.80 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=32.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
+++|.|||.|.+|..+|..|+..|.+|.++.+.+.
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 68999999999999999999999999999998754
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.99 E-value=0.003 Score=51.24 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=31.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
|+|+|||.|.-|...|..|++.|++|+++++++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 679999999999999999999999999999864
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0074 Score=48.87 Aligned_cols=88 Identities=17% Similarity=0.106 Sum_probs=54.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEE--eCChhHHHHHhcc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~--~p~~~~~~~~~~~ 147 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|+.++.++..+. +.+......+..+. +...++.+.++
T Consensus 3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dv~~~~~v~~~~-- 73 (254)
T d2gdza1 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAA-------LHEQFEPQKTLFIQCDVADQQQLRDTF-- 73 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HTTTSCGGGEEEEECCTTSHHHHHHHH--
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHhcCCCcEEEEEeecCCHHHHHHHH--
Confidence 688888885 7799999999999999999999998776554431 11111112223222 23445566666
Q ss_pred cccccccCCCCCEEEEecCCC
Q 022909 148 KHGAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~ 168 (290)
++..+...+=.++||.+...
T Consensus 74 -~~~~~~~G~iDilVnnAg~~ 93 (254)
T d2gdza1 74 -RKVVDHFGRLDILVNNAGVN 93 (254)
T ss_dssp -HHHHHHHSCCCEEEECCCCC
T ss_pred -HHHHHHcCCcCeeccccccc
Confidence 23333333334777776443
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.97 E-value=0.057 Score=41.59 Aligned_cols=102 Identities=12% Similarity=0.122 Sum_probs=73.5
Q ss_pred HHHHHHHHHCCCeEEEEeCCcc----chhhHHhCCCccCCCHHHHhhcCCeEEEEe-CChhHHHHHhcccccccccCCCC
Q 022909 84 TPMAQNLLKAGCDVTVWNRTKS----KCDPLISLGAKYQPSPDEVAASCDVTFAML-ADPESAMDVACGKHGAASGMGPG 158 (290)
Q Consensus 84 ~~la~~l~~~g~~V~~~d~~~~----~~~~~~~~g~~~~~~~~~~~~~aDivv~~~-p~~~~~~~~~~~~~~~~~~~~~~ 158 (290)
-..++.|.+.|++|.+=.--.. ..+.+.+.|+..+++.++++.++|+|+-.- |...+. ..+.++.++++
T Consensus 20 P~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e~------~~~ei~~lk~g 93 (194)
T d1l7da2 20 PEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEE------GTDEVALIKEG 93 (194)
T ss_dssp HHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGGG------SCCGGGGSCTT
T ss_pred HHHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCccccc------chhHhhhccCc
Confidence 4678889999999987532211 124456678988889999999999887543 433221 23457789999
Q ss_pred CEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 159 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 159 ~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
+++|.. ..+....++.+.+.++++..++.....
T Consensus 94 ~~li~~--l~p~~~~~~~~~l~~~~it~~a~e~ip 126 (194)
T d1l7da2 94 AVLMCH--LGALTNRPVVEALTKRKITAYAMELMP 126 (194)
T ss_dssp CEEEEE--CCGGGCHHHHHHHHHTTCEEEEGGGCC
T ss_pred eEEEEe--cccccchhHHHHHHhcCceEEeeeccc
Confidence 999866 456667788899999999988866554
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.97 E-value=0.0026 Score=52.23 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=32.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
..+|.|||.|..|..+|..|+..|++|.+++++++
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 45799999999999999999999999999999764
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0077 Score=52.70 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=31.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..||.|||+|.+|..+++.|...|. +++++|.+.
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 5799999999999999999999998 799998753
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.95 E-value=0.0039 Score=51.53 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=32.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
.++|.|||.|..|...|..|++.|++|+++++++
T Consensus 30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 6899999999999999999999999999999864
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=95.90 E-value=0.016 Score=47.19 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=35.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
+|++.|.| .+.||+++|+.|++.|++|.+.+|+.++.++..+
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~ 48 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCN 48 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 78888888 5789999999999999999999999877665543
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.87 E-value=0.0064 Score=44.18 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=32.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
.++|.|||.|.+|..+|..|+..|.+|+++++.+.
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence 68999999999999999999999999999998764
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.86 E-value=0.0052 Score=50.40 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=36.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
+|++.|.| .+.||+++|+.|++.|++|.+.+|++++.++..+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~ 47 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQ 47 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 78888888 4889999999999999999999999877665443
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.85 E-value=0.0058 Score=50.17 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=35.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|++++.++..
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~ 45 (274)
T d1xhla_ 4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETK 45 (274)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 788888885 78999999999999999999999987765543
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=95.76 E-value=0.0058 Score=49.16 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=49.1
Q ss_pred CeEE-EEcc-cHhHHHHHHHHHHCCCe-------EEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 72 GRIG-FLGM-GIMGTPMAQNLLKAGCD-------VTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 72 ~~Ig-iiG~-G~iG~~la~~l~~~g~~-------V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
|+|. |-|. +.||+++|+.|++.|++ |.+++|++++.++..+. +.+.-.++..+..-+...++.+
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~-------~~~~g~~~~~~~~Dvt~~~~v~ 73 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE-------CRAEGALTDTITADISDMADVR 73 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH-------HHTTTCEEEEEECCTTSHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEecCCCHHHHH
Confidence 3444 4574 78999999999999987 89999998776654331 1110011112222233445666
Q ss_pred HHhcccccccccCCCCCEEEEecC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++ ++..+...+=.++||.+.
T Consensus 74 ~~~---~~~~~~~g~iDilvnnAg 94 (240)
T d2bd0a1 74 RLT---THIVERYGHIDCLVNNAG 94 (240)
T ss_dssp HHH---HHHHHHTSCCSEEEECCC
T ss_pred HHH---HHHHHHcCCcceeecccc
Confidence 665 333444444446777754
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.019 Score=46.20 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=32.6
Q ss_pred CCeEEEEccc---HhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG~G---~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
+|++.|.|.+ .||.++|+.|.+.|++|++.+|+.+..+
T Consensus 5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~ 45 (258)
T d1qsga_ 5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKG 45 (258)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHH
T ss_pred CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 7999999875 4999999999999999999999865433
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=95.76 E-value=0.007 Score=49.30 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=31.2
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
+|++.|.| .+.||+++|+.|++.|++|.+.+|+.+
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~ 42 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE 42 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence 78888887 588999999999999999999999864
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.76 E-value=0.021 Score=45.68 Aligned_cols=42 Identities=24% Similarity=0.187 Sum_probs=36.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|++++.+++.+
T Consensus 5 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (242)
T d1cyda_ 5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK 47 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 799999985 789999999999999999999999877665543
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=95.75 E-value=0.0046 Score=52.18 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=34.3
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
+|||.|.| .|-||+.+++.|...|++|.+++|+..+..
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~ 46 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVP 46 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccH
Confidence 79999999 699999999999999999999999876543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.72 E-value=0.0093 Score=48.53 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=34.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
+|.+.|.| .+.||+++|+.|++.|++|.+.+|+.++.++..
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~ 46 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETR 46 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 67777777 589999999999999999999999987766544
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=95.72 E-value=0.0038 Score=50.73 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=41.2
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhh--cCCeEEEEe
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAML 135 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~ 135 (290)
|||.|.|. |.||+.+++.|...|++|+..||+.-+.. -..+++++++ +.|+|+-+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~--------d~~~~~~~l~~~~~d~vih~a 60 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDIT--------NVLAVNKFFNEKKPNVVINCA 60 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTT--------CHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCC--------CHHHHHHHHHHcCCCEEEeec
Confidence 78999996 99999999999999999999998753211 1123445555 458776554
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=95.72 E-value=0.014 Score=47.00 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=33.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
+|++.|.| .+.||+++|+.|++.|++|.+.+|+++..+
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~ 43 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE 43 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 78898888 689999999999999999999999876544
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.63 E-value=0.0064 Score=50.92 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=32.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
.+||.|||+|--|...|..|+..|++|++++++..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 58999999999999999999999999999998764
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.60 E-value=0.015 Score=40.61 Aligned_cols=63 Identities=5% Similarity=0.034 Sum_probs=48.2
Q ss_pred CCeEEEEcc----------cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGM----------GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~----------G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~ 135 (290)
.++|||+|+ ..-...+.+.|...|.+|.+|||.-...+. ..+.....+++++++.+|+|++..
T Consensus 15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~--~~~~~~~~~l~~~~~~sDiII~~~ 87 (108)
T d1dlja3 15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES--EDQSVLVNDLENFKKQANIIVTNR 87 (108)
T ss_dssp SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT--TCCSEECCCHHHHHHHCSEEECSS
T ss_pred CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh--ccCCEEEeCHHHHHhhCCEEEEcC
Confidence 368999986 245677999999999999999998654321 245666789999999999877554
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.011 Score=47.46 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=36.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
+|.+.|.|. +.||.++|+.|++.|++|++.+|+.++.+...+
T Consensus 5 GKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 47 (248)
T d2o23a1 5 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK 47 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 788888884 789999999999999999999999887765543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.56 E-value=0.011 Score=48.32 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=31.4
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
+|++.|.| .+.||+++|+.|+..|++|++.+++.+
T Consensus 18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~ 53 (272)
T d1g0oa_ 18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST 53 (272)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 78888888 699999999999999999999988754
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.55 E-value=0.016 Score=44.11 Aligned_cols=88 Identities=17% Similarity=0.096 Sum_probs=62.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc-----CCC-HHHHh-----hcCCeEEEEeCCh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-----QPS-PDEVA-----ASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~~~-~~~~~-----~~aDivv~~~p~~ 138 (290)
+.+|.|.|. |.+|...++..+..|.+|++..+++++.+.+++.|... .++ .++++ +..|+|+-++. .
T Consensus 30 G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-~ 108 (182)
T d1v3va2 30 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-G 108 (182)
T ss_dssp SCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-H
T ss_pred CCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-c
Confidence 688999987 88999999999999999999999988887777766431 112 22222 23788888774 3
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+.... .++.++++..++.++.
T Consensus 109 ~~~~~-------~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 109 EFLNT-------VLSQMKDFGKIAICGA 129 (182)
T ss_dssp HHHHH-------HGGGEEEEEEEEECCC
T ss_pred hhhhh-------hhhhccCCCeEEeecc
Confidence 33322 3566778888777753
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.51 E-value=0.027 Score=41.72 Aligned_cols=64 Identities=16% Similarity=0.047 Sum_probs=46.3
Q ss_pred CCeEEEEcc---cHhHHHHHHHHHHCCCeEEEEeCCccc---hhhHHh--CCCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSK---CDPLIS--LGAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~---G~iG~~la~~l~~~g~~V~~~d~~~~~---~~~~~~--~g~~~~~~~~~~~~~aDivv~~ 134 (290)
+.||++||= +++..+++..+..+|+++.++.+.+.. .....+ ..+..+++++++++++|+|...
T Consensus 3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~ 74 (153)
T d1pg5a2 3 GLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT 74 (153)
T ss_dssp TCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence 799999995 569999999999999987655543211 111122 2355667899999999988754
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.50 E-value=0.0096 Score=46.23 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=39.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK 116 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~ 116 (290)
+.+|.|+|+|.+|...++.++..|. +|++.|+++++.+.+++.|..
T Consensus 26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~ 72 (195)
T d1kola2 26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE 72 (195)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE
T ss_pred CCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc
Confidence 7899999999999999999888887 789999999888877776653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.015 Score=44.07 Aligned_cols=45 Identities=20% Similarity=0.132 Sum_probs=38.4
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+| .|.+|....+.++..|.+|++.++++++.+.+++.|.
T Consensus 29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa 74 (179)
T d1qora2 29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 74 (179)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence 68899995 5779999999999999999999999988777666553
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.0089 Score=50.20 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=29.3
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRT 103 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~ 103 (290)
|||.|+| .|.||+.+++.|.+.|++|++.|+.
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~ 33 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL 33 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence 6799998 5999999999999999999999863
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.016 Score=48.53 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=44.2
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC-C-------CccCCCHH-HHhhcCCeEEEEeC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G-------AKYQPSPD-EVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~-g-------~~~~~~~~-~~~~~aDivv~~~p 136 (290)
|||.|.| +|.||+.+++.|.+.|+ +|++.|+.......+.+. + +....+.. .+.+++|+|+-+.-
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~ 76 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence 5899998 59999999999999885 899998865544433321 1 11112223 36678999876543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=95.47 E-value=0.021 Score=46.21 Aligned_cols=112 Identities=19% Similarity=0.141 Sum_probs=74.9
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh----CCCc---cCCCHHHHhh--cCCeEEEEeCChhH
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LGAK---YQPSPDEVAA--SCDVTFAMLADPES 140 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----~g~~---~~~~~~~~~~--~aDivv~~~p~~~~ 140 (290)
.+++|.=+|||. |. ++..++..|.+|+++|.++...+.+++ .++. ...+..+.+. ..|+|+... ....
T Consensus 120 ~g~~VLDiGcGs-G~-l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani-~~~~ 196 (254)
T d2nxca1 120 PGDKVLDLGTGS-GV-LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANL-YAEL 196 (254)
T ss_dssp TTCEEEEETCTT-SH-HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEEC-CHHH
T ss_pred ccCEEEEcccch-hH-HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcc-cccc
Confidence 378999999996 54 555677789999999999987765543 3332 2345555543 478887665 3445
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
...++ +++.+.++||..+|- |.....+.+.+.+.+++.|...+.
T Consensus 197 l~~l~---~~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 197 HAALA---PRYREALVPGGRALL-TGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp HHHHH---HHHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHH---HHHHHhcCCCcEEEE-EecchhhHHHHHHHHHHCCCEEEE
Confidence 55555 456678899887763 222334567788888887766554
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.40 E-value=0.011 Score=46.93 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=33.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
.++|.|||.|..|...|..|+..|++|++++++.+-
T Consensus 49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence 799999999999999999999999999999987643
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.34 E-value=0.019 Score=44.13 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=49.1
Q ss_pred CCeEEEEccc--HhHHHHHHHHHHCCCeEEEEeCCccc-----hhhHH----h--CCCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSK-----CDPLI----S--LGAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G--~iG~~la~~l~~~g~~V~~~d~~~~~-----~~~~~----~--~g~~~~~~~~~~~~~aDivv~~~ 135 (290)
+.||++||=| ++..+++..+..+|+++.++.+..-. .+.+. + ..+....+++++++++|+|..-.
T Consensus 5 ~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~~ 82 (185)
T d1dxha2 5 DISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDV 82 (185)
T ss_dssp GCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEeeh
Confidence 7999999954 89999999999999999999984211 11111 1 23456789999999999987644
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.32 E-value=0.0097 Score=49.95 Aligned_cols=35 Identities=31% Similarity=0.424 Sum_probs=30.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC--CeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~ 105 (290)
.|||+|||+|.-|...|..|++.| ++|++++++.+
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 689999999999999999998765 59999998854
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.28 E-value=0.0088 Score=49.74 Aligned_cols=32 Identities=31% Similarity=0.524 Sum_probs=29.4
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRT 103 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~ 103 (290)
|||.|.| .|-||+.+++.|.+.|++|++.|+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~ 34 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 34 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 7899998 5999999999999999999999863
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=95.26 E-value=0.015 Score=46.41 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=33.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|+++..+
T Consensus 4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~ 42 (234)
T d1o5ia_ 4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK 42 (234)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 789999985 78999999999999999999999876543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.24 E-value=0.011 Score=46.22 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=32.4
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
..-.|.|||.|.-|...|..|++.|++|+++++++.
T Consensus 4 ~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~ 39 (297)
T d2bcgg1 4 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDH 39 (297)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 355699999999999999999999999999999753
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.17 E-value=0.016 Score=43.78 Aligned_cols=46 Identities=30% Similarity=0.347 Sum_probs=39.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 116 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~ 116 (290)
+.+|.|-| .|.+|....+..+..|.+|+...+++++.+.+++.|..
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad 70 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS 70 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc
Confidence 45799998 59999999999999999999999998888877765543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.10 E-value=0.0097 Score=45.45 Aligned_cols=46 Identities=30% Similarity=0.330 Sum_probs=40.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 116 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~ 116 (290)
+.+|.|.| .|.+|....+.++..|.+|+...+++++.+.+++.|..
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~ 78 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK 78 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS
T ss_pred CCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc
Confidence 68899999 69999999999999999999999998888777765543
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.012 Score=47.36 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=36.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
+|++.|.| .+.||+++|+.|++.|++|++.+|++++.+++.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK 48 (245)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 67777777 6999999999999999999999999877666544
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.11 Score=36.24 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=75.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEE-EEeCCccchhhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~~ 146 (290)
..||.|-|. |+.|+..+++..+.|-+|. ...+. +.-+ ...|+..+++..|+++ ++|.=++-+|.+.....++.
T Consensus 6 ~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPg--kgG~-~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~~E 82 (119)
T d2nu7a1 6 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPG--KGGT-THLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILE 82 (119)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTT--CTTE-EETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccC--CCCc-ccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHHHH
Confidence 578999996 9999999999999998865 44443 3211 1246888889999887 48888888987665555541
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
.+-..+ ..+++-+-..++.|...+.+.+++.+.+++
T Consensus 83 ---Ai~agI--~~iV~ITEgIP~~D~~~i~~~~~~~~~~li 118 (119)
T d2nu7a1 83 ---AIDAGI--KLIITITEGIPTLDMLTVKVKLDEAGVRMI 118 (119)
T ss_dssp ---HHHTTC--SEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred ---HHHCCC--CEEEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence 111112 123333446777788888888888877665
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=95.02 E-value=0.012 Score=44.05 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=31.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC--CeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~ 105 (290)
++||.|||.|..|..+|..|+..+ .+|+++++++.
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~ 38 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence 799999999999999999999877 47899988763
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=95.02 E-value=0.021 Score=45.91 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=31.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
+|++.|.|. +.||+++|+.|+..|++|.+.+|+++
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA 40 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 788888885 78999999999999999999999864
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=95.01 E-value=0.016 Score=47.01 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=29.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|+.
T Consensus 4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~ 38 (260)
T d1x1ta1 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD 38 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 677777774 7799999999999999999999975
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.00 E-value=0.009 Score=48.45 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=30.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEe-CCccchh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWN-RTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d-~~~~~~~ 108 (290)
+|++.|.|. +.||.++|+.|++.|++|.+.+ ++.+..+
T Consensus 6 GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~ 45 (259)
T d1ja9a_ 6 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAE 45 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHH
Confidence 899988884 7799999999999999998755 4444333
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=94.95 E-value=0.011 Score=43.90 Aligned_cols=62 Identities=18% Similarity=0.064 Sum_probs=48.7
Q ss_pred CCeEEEEcc---cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~---G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~ 135 (290)
+.+|++||= +++..+++..+..+|+++.+..+..-.. .+..+....+++++++++|+|....
T Consensus 3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~---~~~~~~~~~~~~ea~~~aDviy~~r 67 (151)
T d2at2a2 3 GLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD---EENTFGTYVSMDEAVESSDVVMLLR 67 (151)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhc---cccceeEEEechhccccCceeeeeE
Confidence 789999996 6899999999999999999888753211 1233556678999999999987543
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.016 Score=48.98 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=28.1
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
|++.|.| +|-||+.+++.|...|++|++.||.+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 5566888 79999999999999999999999854
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.023 Score=36.95 Aligned_cols=44 Identities=32% Similarity=0.365 Sum_probs=38.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG 114 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g 114 (290)
+.+|.|.|. |.+|....+.++..|++|++..+++++.+.+++.|
T Consensus 32 ~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG 76 (77)
T d1o8ca2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG 76 (77)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred CCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence 678999875 99999999999999999999999998887766543
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=94.92 E-value=0.028 Score=41.98 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=49.2
Q ss_pred CCeEEEEcc--cHhHHHHHHHHHHCCCeEEEEeCCccch-h----h----HHh--CCCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGM--GIMGTPMAQNLLKAGCDVTVWNRTKSKC-D----P----LIS--LGAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~--G~iG~~la~~l~~~g~~V~~~d~~~~~~-~----~----~~~--~g~~~~~~~~~~~~~aDivv~~~ 135 (290)
+.||++||= .++-.+++..+..+|+++.++.+..-.. . . ..+ ..+...++++++++++|+|..-.
T Consensus 3 g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~ 80 (161)
T d1vlva2 3 GVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 80 (161)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence 799999994 5899999999999999999998753111 1 1 111 12456789999999999998654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.89 E-value=0.016 Score=46.53 Aligned_cols=34 Identities=32% Similarity=0.339 Sum_probs=31.4
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCcc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKS 105 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~ 105 (290)
++|.|||.|.-|..+|..|++.|. +|.+++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 689999999999999999999995 8999999765
|
| >d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.86 E-value=0.00053 Score=50.13 Aligned_cols=30 Identities=7% Similarity=-0.195 Sum_probs=28.0
Q ss_pred cCCCCcchhhhccCCCCccccccccCCCCC
Q 022909 15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLP 44 (290)
Q Consensus 15 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~ 44 (290)
++||++++|+|+++|++..+++.+|+|.|-
T Consensus 100 ~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~ 129 (130)
T d1ygya2 100 AEAQDRAGTDVAESVRLALAGEFVPDAVNV 129 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence 899999999999999999999999999885
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=94.86 E-value=0.038 Score=44.52 Aligned_cols=84 Identities=14% Similarity=0.206 Sum_probs=57.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
++||++||.- ...+.+.+.|.++.+++++++. |.......++++.+||+|++.- +.-..+-+ +.
T Consensus 122 g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~-------gd~p~~~~~~lLp~aD~viiTG--sTlvN~Tl---~~ 185 (251)
T d2h1qa1 122 GKKVGVVGHF----PHLESLLEPICDLSILEWSPEE-------GDYPLPASEFILPECDYVYITC--ASVVDKTL---PR 185 (251)
T ss_dssp TSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT-------TCEEGGGHHHHGGGCSEEEEET--HHHHHTCH---HH
T ss_pred CCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC-------CCCCchHHHHhhhcCCEEEEEe--chhhcCCH---HH
Confidence 7999999874 4566677888999999999753 2333345788999999999874 33333333 34
Q ss_pred ccccCCCCCEEEEecCCChh
Q 022909 151 AASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~ 170 (290)
+++..++...+|-++-+.+.
T Consensus 186 LL~~~~~a~~vvl~GPS~p~ 205 (251)
T d2h1qa1 186 LLELSRNARRITLVGPGTPL 205 (251)
T ss_dssp HHHHTTTSSEEEEESTTCCC
T ss_pred HHHhCCcCCEEEEECCCccc
Confidence 56666777666656544443
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.82 E-value=0.058 Score=38.00 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=62.1
Q ss_pred CCeEEEEccc-----------HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCCh-
Q 022909 71 PGRIGFLGMG-----------IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP- 138 (290)
Q Consensus 71 ~~~IgiiG~G-----------~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~- 138 (290)
.++|.|||.| ..+...++.|++.|+++++.+.||+... ++. .-+|-+.+- |.+
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVs----------td~----d~aD~lYfe-plt~ 68 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVS----------TDY----DTSDRLYFE-PVTL 68 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSST----------TST----TSSSEEECC-CCSH
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhh----------cCh----hhcCceEEc-cCCH
Confidence 5899999998 4567888899999999999999997532 122 247777654 443
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+.+..++ ..=+|..+++-. +......+...|.+.|+.+++
T Consensus 69 e~v~~Ii-------~~E~p~~ii~~~---GGQtalnla~~L~~~gv~iLG 108 (121)
T d1a9xa4 69 EDVLEIV-------RIEKPKGVIVQY---GGQTPLKLARALEAAGVPVIG 108 (121)
T ss_dssp HHHHHHH-------HHHCCSEEECSS---STHHHHTTHHHHHHTTCCBCS
T ss_pred HHHHHHH-------HHhCCCEEEeeh---hhhhHHHHHHHHHHcCCcEEC
Confidence 3444544 333577777643 334455667777777765544
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=94.81 E-value=0.031 Score=45.05 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=32.8
Q ss_pred CCeEEEEcc-cH--hHHHHHHHHHHCCCeEEEEeCCccch
Q 022909 71 PGRIGFLGM-GI--MGTPMAQNLLKAGCDVTVWNRTKSKC 107 (290)
Q Consensus 71 ~~~IgiiG~-G~--iG~~la~~l~~~g~~V~~~d~~~~~~ 107 (290)
+|++.|.|+ |. ||.++|+.|++.|++|++.+++.++.
T Consensus 6 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~ 45 (268)
T d2h7ma1 6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL 45 (268)
T ss_dssp TCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence 899999995 54 99999999999999999999987654
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=94.80 E-value=0.062 Score=43.18 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=33.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
+|+|-|.|. +.||.++|+.|++.|++|++.+|+.++.+.+
T Consensus 5 gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~ 45 (254)
T d1sbya1 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL 45 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHH
Confidence 799999985 6799999999999999988887776654443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=0.019 Score=43.74 Aligned_cols=45 Identities=33% Similarity=0.369 Sum_probs=37.8
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|.| .|.+|....+.++..|.+|++..+++++.+.+++.|.
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGa 77 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA 77 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTE
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcc
Confidence 34687776 5999999999999999999999999988777766554
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.74 E-value=0.13 Score=36.13 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=74.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEE-EEeCCccchhhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~~ 146 (290)
..||.|-|. |+.|+..+++..+.|-+|. ...+... -... .++..+++.+|+++ ++|.=++.+|.+.....++.
T Consensus 7 ~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkg-G~~~--~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi~E 83 (121)
T d1oi7a1 7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKG-GMEV--LGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALE 83 (121)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-TCEE--TTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCC-CcEE--ECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHHHH
Confidence 568999995 9999999999999998865 4444321 1111 46788889999887 48888999987655555541
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.+-..+ ..+++-+-..++.|...+.+.+++.+.++++
T Consensus 84 ---Ai~agI--~liv~ITEgVPv~Dm~~i~~~~~~~~~~liG 120 (121)
T d1oi7a1 84 ---AAHAGI--PLIVLITEGIPTLDMVRAVEEIKALGSRLIG 120 (121)
T ss_dssp ---HHHTTC--SEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred ---HHhCCC--cEEEEecCCCCHHHHHHHHHHHHhCCCEEeC
Confidence 111112 1233434466777888888888887776654
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.70 E-value=0.015 Score=46.96 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=30.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
-.|.|||.|-+|.++|..|++.|.+|+++++..
T Consensus 5 ~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 5 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 359999999999999999999999999999864
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=94.70 E-value=0.03 Score=44.82 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=27.5
Q ss_pred EEEE-c-ccHhHHHHHHHHHHCCCeEEEEe-CCccchhhH
Q 022909 74 IGFL-G-MGIMGTPMAQNLLKAGCDVTVWN-RTKSKCDPL 110 (290)
Q Consensus 74 Igii-G-~G~iG~~la~~l~~~g~~V~~~d-~~~~~~~~~ 110 (290)
|.+| | .+.||+++|+.|++.|++|.+.+ |+++..+.+
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~ 42 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEV 42 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 4444 5 68899999999999999998765 555444443
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.076 Score=39.82 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=20.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG 94 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g 94 (290)
..+|+++|+|.+|+.+++.+....
T Consensus 4 ~i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 4 VVNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCC
T ss_pred EEEEEEEeCCHHHHHHHHHHHHhH
Confidence 467999999999999999998643
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.66 E-value=0.017 Score=45.35 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=29.5
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
+|.|||.|.-|...|..|++.|+ +|+++++++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 69999999999999999999996 799999864
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.65 E-value=0.021 Score=45.65 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
+|++.|.|. +.||+++|+.|++.|++|.+.+|+.+..+
T Consensus 7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~ 45 (237)
T d1uzma1 7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK 45 (237)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence 788988885 67999999999999999999999876544
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=94.61 E-value=0.025 Score=39.66 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=30.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC---CCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA---GCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~---g~~V~~~d~~~~ 105 (290)
++++.|||.|.+|..+|..+..+ |.+|+++.+.+.
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence 58999999999999999877654 789999988754
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.55 E-value=0.017 Score=45.52 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=30.1
Q ss_pred CeEEEEcccHhHHHHHHHHHH--CCCeEEEEeCCcc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLK--AGCDVTVWNRTKS 105 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~--~g~~V~~~d~~~~ 105 (290)
.||+|||.|.-|...|..|+. .|++|++|++.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 589999999999999999865 4789999998764
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.52 E-value=0.021 Score=45.76 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=28.3
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
|.|.|.| .+.||+++|+.|++.|++|.+.|++.+
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 3445556 578999999999999999999998754
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=0.024 Score=46.29 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=31.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
..||.|||.|--|...|..|++.|++|+++..+.
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 5789999999999999999999999999998764
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=94.37 E-value=0.033 Score=42.00 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=27.4
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR 102 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~ 102 (290)
+||||=|+|+||+.+.|.+...+.+|.+.+-
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd 31 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALIND 31 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEECC
Confidence 5899999999999999999888898877763
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.20 E-value=0.035 Score=41.15 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=49.6
Q ss_pred CCeEEEEcc---cHhHHHHHHHHHHCCCeEEEEeCCccch-----hhHHhC--CCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISL--GAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~---G~iG~~la~~l~~~g~~V~~~d~~~~~~-----~~~~~~--g~~~~~~~~~~~~~aDivv~~~ 135 (290)
+.||++||= +++..+++..+..+|+++.++.+..-.. ..+.+. .+..+.+++++++++|+|....
T Consensus 4 gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~ 78 (157)
T d1ml4a2 4 GLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTR 78 (157)
T ss_dssp SEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeec
Confidence 799999997 7899999999999999999988753221 122222 2345678999999999887654
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.18 E-value=0.12 Score=42.46 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=30.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
+|++.|-|. +.||+++|+.|++.|++|.+.|++.+
T Consensus 7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~ 42 (302)
T d1gz6a_ 7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD 42 (302)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 677878785 78999999999999999999998765
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.09 E-value=0.035 Score=42.94 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=40.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHhCCCccCCCHHHHh----hcCCeEEEEeC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAKYQPSPDEVA----ASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~----~~aDivv~~~p 136 (290)
.|||.|.|. |.+|+.+++.|.+.|+ +|+...|++.... ..... ...+..+.. ...|.|+.++.
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~--~~~~~-~~~d~~~~~~~~~~~~d~vi~~~g 71 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH--PRLDN-PVGPLAELLPQLDGSIDTAFCCLG 71 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC--TTEEC-CBSCHHHHGGGCCSCCSEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc--ccccc-cccchhhhhhccccchheeeeeee
Confidence 689999996 9999999999999997 5666666543211 11001 112333333 34688888764
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.99 E-value=0.071 Score=39.76 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=47.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccc-----hhhHHh------CCCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK-----CDPLIS------LGAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~-----~~~~~~------~g~~~~~~~~~~~~~aDivv~~ 134 (290)
+.||++||- .++..+++..+..+|+++.++.+..-. .+...+ ..+....+.+++++++|+|..-
T Consensus 4 gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~ 79 (163)
T d1pvva2 4 GVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTD 79 (163)
T ss_dssp TCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeec
Confidence 899999995 668889999999999999999874211 111111 1245667999999999988854
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.031 Score=46.70 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=29.9
Q ss_pred CCCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeC
Q 022909 70 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNR 102 (290)
Q Consensus 70 ~~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~ 102 (290)
|.+||.|.| +|-||+.+++.|.+.|++|++.|+
T Consensus 1 M~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 358999998 699999999999999999999875
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=93.91 E-value=0.032 Score=44.16 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=32.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
.-.|.|||.|..|...|..|++.|++|+++++++.-
T Consensus 2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 456999999999999999999999999999987654
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.89 E-value=0.0042 Score=49.17 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=23.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCe
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCD 96 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~ 96 (290)
|||.|||+|-+|...|..|++.|++
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~ 25 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHS 25 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTT
T ss_pred CEEEEECchHHHHHHHHHHHHCCCC
Confidence 6899999999999999999998864
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.86 E-value=0.07 Score=36.23 Aligned_cols=43 Identities=9% Similarity=-0.145 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhh
Q 022909 235 GNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQS 277 (290)
Q Consensus 235 g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~ 277 (290)
..|+..|++.|.+.+.- ..++|...+|++.|+|..++.+++..
T Consensus 2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~ 45 (98)
T d1mv8a1 2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQ 45 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 46889999999998888 88888889999999999999999854
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=93.81 E-value=0.22 Score=38.87 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=62.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc----c----chhhH----Hh--CCCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK----S----KCDPL----IS--LGAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~----~----~~~~~----~~--~g~~~~~~~~~~~~~aDivv~~~ 135 (290)
..||.|+|+|.-|..+++.+...+. ++..+|+.. + ..... .+ .......++.+++..+++++...
T Consensus 26 d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~ 105 (222)
T d1vl6a1 26 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS 105 (222)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS
T ss_pred hcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc
Confidence 6899999999999999999988776 788999861 1 11111 11 11223457888888888776554
Q ss_pred CChhHHHHHhcccccccccCCCCCEEEEecCCChhHH
Q 022909 136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 172 (290)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~ 172 (290)
. ..++ .++....|.+..+|.-.|+-.+..+
T Consensus 106 ~-----~~~~--~~e~m~~~~~rPIIFpLSNPt~~~e 135 (222)
T d1vl6a1 106 R-----GNIL--KPEWIKKMSRKPVIFALANPVPEID 135 (222)
T ss_dssp C-----SSCS--CHHHHTTSCSSCEEEECCSSSCSSC
T ss_pred c-----cccc--cHHHHhhcCCCCEEEecCCCccchh
Confidence 2 2333 2234566778888888877655443
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.025 Score=46.67 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=31.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
..|.|||+|.-|..+|..|+..|++|.+++++..
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4699999999999999999999999999998754
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.70 E-value=0.02 Score=44.99 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=31.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-------CeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-------~~V~~~d~~~~ 105 (290)
+.||+|||.|.-|.+.|..|.+.| ++|++|++.+.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 478999999999999999998877 47999998764
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=93.65 E-value=0.14 Score=38.85 Aligned_cols=38 Identities=13% Similarity=-0.030 Sum_probs=31.6
Q ss_pred CCeEEEE--cccHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFL--GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~Igii--G~G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
+.++.|+ |.|.+|....+.++..|.+|++..++++..+
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~ 68 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLD 68 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHH
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccc
Confidence 5789888 6799999999999999999998877665543
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=93.63 E-value=0.034 Score=42.60 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=28.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHC--CCeEEEEeCCc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTK 104 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~--g~~V~~~d~~~ 104 (290)
|||.|||.|.+|..+|..|+.. +.+|+++++++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 6899999999999999999876 45899998764
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=93.61 E-value=0.027 Score=45.08 Aligned_cols=39 Identities=28% Similarity=0.261 Sum_probs=34.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
...|.|||.|.-|...|..|++.|.+|+++++++.....
T Consensus 4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k 42 (253)
T d2gqfa1 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRK 42 (253)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence 456999999999999999999999999999998754443
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=93.56 E-value=0.037 Score=45.68 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
...|.|||+|.-|.+.|..|+..|.+|.+++++++
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 46799999999999999999999999999998765
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=93.55 E-value=0.034 Score=45.48 Aligned_cols=33 Identities=36% Similarity=0.650 Sum_probs=29.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
.+|.|||.|-+|.++|..|++.|. +|++.++++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 369999999999999999999995 799999874
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=93.42 E-value=0.9 Score=32.59 Aligned_cols=105 Identities=10% Similarity=0.036 Sum_probs=61.8
Q ss_pred CCeEEEE-c-----ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCC-----hh
Q 022909 71 PGRIGFL-G-----MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD-----PE 139 (290)
Q Consensus 71 ~~~Igii-G-----~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~-----~~ 139 (290)
.+||.|| + +-.|...+++.+...|++|.+++......+. ....+.++|.|++..|. ++
T Consensus 2 ~~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~-----------~~~~l~~~d~vi~Gspt~~~~~~~ 70 (152)
T d1e5da1 2 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQ-----------IMSEISDAGAVIVGSPTHNNGILP 70 (152)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHH-----------HHHHHHTCSEEEEECCCBTTBCCH
T ss_pred CCeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhh-----------hccchhhCCEEEEeccccCCccCc
Confidence 3567666 2 2457778888888899999998865433221 22346789999999996 35
Q ss_pred HHHHHhcccccccccCCCCCEEEEec-CCChhHHHHHHHHHHHcCCcEEe
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVS-TVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s-~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
....++.. -....++.....+-.+ .......+.+.+.+++.|...+.
T Consensus 71 ~~~~~l~~--~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~g~~~v~ 118 (152)
T d1e5da1 71 YVAGTLQY--IKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPA 118 (152)
T ss_dssp HHHHHHHH--HHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCS
T ss_pred hhHHHHHH--hhccCCCCCEEEEEEeeCCCCccHHHHHHHHHHCCCEEec
Confidence 55666521 0011122212222222 22344456788888888776654
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.08 Score=47.29 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=63.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC--------CCccCCCHHHHhh--cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivv~~~p~~~ 139 (290)
..+|.|||+|.+|..+++.|...|. +++++|.+.-....+... |-..+....+.+. +.|+-+..+..
T Consensus 25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~-- 102 (529)
T d1yova1 25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE-- 102 (529)
T ss_dssp HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESS--
T ss_pred CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcC--
Confidence 6899999999999999999999997 799999765333333221 1111111111122 12332222222
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCc
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p 190 (290)
....++..+ .+.++.-.++|++ .........+.+.+.+.++.++.+.
T Consensus 103 ~~~~~~~~~---~~~~~~~dvVv~~-~~~~~~~~~l~~~c~~~~ip~i~~~ 149 (529)
T d1yova1 103 SPENLLDND---PSFFCRFTVVVAT-QLPESTSLRLADVLWNSQIPLLICR 149 (529)
T ss_dssp CHHHHHHSC---GGGGGGCSEEEEE-SCCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CchhhhhhH---HHHhcCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 222332111 2223344566655 4455555667777777777766543
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=93.21 E-value=0.05 Score=44.83 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=27.3
Q ss_pred eEEEEc-ccHhHHHHHHHHHHCCCeEEEEeC
Q 022909 73 RIGFLG-MGIMGTPMAQNLLKAGCDVTVWNR 102 (290)
Q Consensus 73 ~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~ 102 (290)
||.|.| +|.||+.+++.|...|++|+++|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 688887 699999999999999999999985
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.19 E-value=0.26 Score=33.24 Aligned_cols=44 Identities=14% Similarity=-0.001 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcC
Q 022909 236 NGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFS 279 (290)
Q Consensus 236 ~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~ 279 (290)
.|+..|++.|.+.+.. ..++|...+|++.|+|..++.+.+..-.
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~ 47 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDD 47 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcc
Confidence 5788999999999998 8888888999999999999988876554
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=93.18 E-value=0.065 Score=40.79 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=48.6
Q ss_pred CCeEEEEccc--HhHHHHHHHHHHCCCeEEEEeCCccch-----hhH----HhCC--CccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPL----ISLG--AKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G--~iG~~la~~l~~~g~~V~~~d~~~~~~-----~~~----~~~g--~~~~~~~~~~~~~aDivv~~~ 135 (290)
+.+|+++|=| ++..+++..+..+|+++.++.+..-.. +.+ ...| +..+.+.+++++++|+|..-.
T Consensus 5 ~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 82 (183)
T d1duvg2 5 EMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDV 82 (183)
T ss_dssp GCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEEe
Confidence 7899999965 799999999999999999998742111 111 1123 345788999999999997644
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.14 E-value=0.055 Score=44.42 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=30.4
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
|+|-|.| +|.||+.+++.|...|++|++.+|...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~ 35 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS 35 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence 5788998 599999999999999999999998653
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.97 E-value=0.064 Score=40.87 Aligned_cols=87 Identities=22% Similarity=0.192 Sum_probs=56.5
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHH-hCCCcc-----CCCHHHHhhc-----CCeEEEEeCCh
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLI-SLGAKY-----QPSPDEVAAS-----CDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~-~~g~~~-----~~~~~~~~~~-----aDivv~~~p~~ 138 (290)
.+|.|.| .|.+|...++.++..|.+ |+..+.++++...+. +.|... .++..+.+++ .|+|+-++. .
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG-g 110 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG-G 110 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-H
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-c
Confidence 6799998 599999999999999986 555666666555444 344321 2345554544 788887774 2
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+.... .++.++++..++.++.
T Consensus 111 ~~~~~-------~~~~l~~~G~iv~~G~ 131 (187)
T d1vj1a2 111 DISNT-------VISQMNENSHIILCGQ 131 (187)
T ss_dssp HHHHH-------HHTTEEEEEEEEEC--
T ss_pred hhHHH-------HhhhccccccEEEecc
Confidence 33332 2566778777777653
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=92.95 E-value=0.098 Score=42.22 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=27.2
Q ss_pred CeEEEE-c-ccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 72 GRIGFL-G-MGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 72 ~~Igii-G-~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
+.|+|| | .+.||+++|+.|+..|++|.+.+++.
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~ 36 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS 36 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 447777 4 57899999999999999998876654
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.93 E-value=0.072 Score=42.74 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=32.2
Q ss_pred CeEEEE-cc-cHhHHHHHHHHHH---CCCeEEEEeCCccchhhHH
Q 022909 72 GRIGFL-GM-GIMGTPMAQNLLK---AGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 72 ~~Igii-G~-G~iG~~la~~l~~---~g~~V~~~d~~~~~~~~~~ 111 (290)
.||+|| |. +.||+++|+.|++ .|++|.+.+|++++.+++.
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~ 50 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLK 50 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHH
Confidence 556666 64 7899999999986 6899999999987766554
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=92.91 E-value=0.05 Score=40.75 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=28.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~ 103 (290)
+++|.|||.|.+|..+|..|+..|.+|.+..+.
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~ 35 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG 35 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEec
Confidence 689999999999999999999999876665443
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.84 E-value=0.052 Score=43.71 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=31.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
.--|.|||.|-.|...|..|++.|.+|++.++..
T Consensus 3 ~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4569999999999999999999999999999853
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.82 E-value=0.052 Score=46.18 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=28.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEe
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWN 101 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d 101 (290)
||||.|.| +|.||+.+++.|...|++|+++|
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD 32 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD 32 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 58999998 59999999999999999999997
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.80 E-value=0.07 Score=42.20 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
+|+|.|.|. |.||+++|+.|++.|++|.+.|+++.
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~ 37 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN 37 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 799999995 88999999999999999999988754
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=92.79 E-value=0.078 Score=37.06 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=29.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC---CeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g---~~V~~~d~~~~ 105 (290)
+++|.|||.|.+|..+|..+..+| .+|+++.+.+.
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 589999999999999998777654 57999988654
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=92.64 E-value=0.11 Score=38.44 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=45.5
Q ss_pred CCeEEEEcc---cHhHHHHHHHHHHCCC-eEEEEeCCccch-----hhHHhCC--CccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGM---GIMGTPMAQNLLKAGC-DVTVWNRTKSKC-----DPLISLG--AKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~---G~iG~~la~~l~~~g~-~V~~~d~~~~~~-----~~~~~~g--~~~~~~~~~~~~~aDivv~~ 134 (290)
+.+|++||= +++..+++..+..+|. .+.++.+..... +.+.+.| +..+.+++++++++|+|...
T Consensus 4 gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~ 78 (160)
T d1ekxa2 4 NLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMT 78 (160)
T ss_dssp SCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEEC
T ss_pred CCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEee
Confidence 799999996 6699999999999975 556666542221 1222333 34567899999999998754
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=92.60 E-value=0.08 Score=39.78 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=25.9
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEe
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWN 101 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d 101 (290)
||||=|+|+||+.+.+.+...+.+|...+
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~~ivaIN 30 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGAQVVAVN 30 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEC
Confidence 69999999999999999988888877665
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.062 Score=44.18 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=29.2
Q ss_pred EEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
|.|||.|.-|...|..|++.|++|++++++.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 8999999999999999999999999999764
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.40 E-value=0.061 Score=43.07 Aligned_cols=40 Identities=20% Similarity=0.133 Sum_probs=32.5
Q ss_pred eEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 73 RIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 73 ~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
|..|-|. +.||+++|+.|++.|++|.+.+|+.++.+++++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ 42 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA 42 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence 3556665 669999999999999999999998877766544
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.37 E-value=0.067 Score=42.23 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=31.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
..||.|.| .|.||+++++.|++.|++|++.||+++.
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~ 38 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND 38 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence 36788888 5999999999999999999999998653
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.36 E-value=0.044 Score=39.10 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=27.4
Q ss_pred CCeEEEEcccHhHHHHHHHHH-HCCCeEE-EEeCCccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL-KAGCDVT-VWNRTKSK 106 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~-~~g~~V~-~~d~~~~~ 106 (290)
..+|.|+|+|++|+++++.+. ..++++. .+|-++++
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k 40 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK 40 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence 468999999999999998764 3466755 56776654
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.30 E-value=0.088 Score=41.92 Aligned_cols=42 Identities=26% Similarity=0.315 Sum_probs=34.8
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~ 112 (290)
+|+|.|.| .+.||.++|+.|+..|+ .|++.+|+.++.+++++
T Consensus 3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~ 47 (250)
T d1yo6a1 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS 47 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH
Confidence 48888888 58999999999999985 68888999887766554
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.28 E-value=0.11 Score=38.05 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=31.0
Q ss_pred CCeEEEE--cccHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 71 PGRIGFL--GMGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 71 ~~~Igii--G~G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
++++.|+ |.|.||..+|..|+..|++|++..+.+.-
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~ 76 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA 76 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 4566666 99999999999999999999999987643
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=92.28 E-value=0.068 Score=42.04 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=30.7
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccch
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKC 107 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~ 107 (290)
|++.|-| .+.||+++|+.|++.|++|.+.+|+++..
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~ 38 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE 38 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc
Confidence 5666667 48999999999999999999999987653
|
| >d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=92.28 E-value=0.49 Score=36.01 Aligned_cols=97 Identities=11% Similarity=0.111 Sum_probs=66.4
Q ss_pred HHHHHHHHHCCCeEEEEeCCcc----chhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCC
Q 022909 84 TPMAQNLLKAGCDVTVWNRTKS----KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGK 159 (290)
Q Consensus 84 ~~la~~l~~~g~~V~~~d~~~~----~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~ 159 (290)
=..++.|.+.|++|.+=.--.. ..+.+.+.|+...++.+++. ++|+|+-.-|.+. +.++.|++++
T Consensus 20 P~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~~----------~e~~~lk~~~ 88 (193)
T d1pjca2 20 PSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPLP----------AEYDLMQKDQ 88 (193)
T ss_dssp HHHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCCG----------GGGGGCCTTC
T ss_pred HHHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCCH----------HHHHhhhcCc
Confidence 3677888899999987532211 12345556888887877776 5898874443322 1257789999
Q ss_pred EEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 160 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 160 ~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
++|.. ..+....++.+.+.++++..++.....
T Consensus 89 ~li~~--l~p~~~~ell~~l~~~~it~~s~E~ip 120 (193)
T d1pjca2 89 LLFTY--LHLAAARELTEQLMRVGLTAIAYETVE 120 (193)
T ss_dssp EEEEC--CCGGGCHHHHHHHHHHTCEEEEGGGCC
T ss_pred eEEEe--cCcccchHHHHHHHHcCCEEEEeeecc
Confidence 99855 555656788888999999888865443
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=92.04 E-value=0.11 Score=39.73 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=21.6
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCC
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAG 94 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g 94 (290)
|.+||||=|+|+||+.+.+.+...+
T Consensus 1 M~ikigINGFGRIGR~vlR~~~~~~ 25 (190)
T d1k3ta1 1 MPIKVGINGFGRIGRMVFQALCEDG 25 (190)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCChHHHHHHHHHHHcC
Confidence 3589999999999999999887653
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=92.03 E-value=0.052 Score=37.40 Aligned_cols=34 Identities=6% Similarity=-0.049 Sum_probs=28.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
+|+|.|||.|+-|..+|.-|+..+-+++...+++
T Consensus 32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 8999999999999999999988777765555543
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.99 E-value=0.089 Score=43.67 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=30.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~ 103 (290)
.|+|.|.| +|-||+.+++.|.+.|++|++.|+.
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~ 49 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF 49 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence 57899998 6999999999999999999999863
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.98 E-value=0.06 Score=41.91 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=31.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
.--|.|||.|.-|...|..++..|.+|.++++++.
T Consensus 5 ~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~ 39 (233)
T d1v59a1 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK 39 (233)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 45699999999999999999999999999997643
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=91.96 E-value=0.034 Score=41.98 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=25.9
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCCeEEEE
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW 100 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~ 100 (290)
|..+|.|||.|.+|..+|..|+..|.++.+.
T Consensus 2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~ 32 (183)
T d1d7ya1 2 LKAPVVVLGAGLASVSFVAELRQAGYQGLIT 32 (183)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEE
T ss_pred CCCCEEEECccHHHHHHHHHHHhcCCceEEE
Confidence 3577999999999999999999988754433
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=91.91 E-value=0.093 Score=39.57 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=24.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC----CeEEEEe
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWN 101 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g----~~V~~~d 101 (290)
+||||=|+|+||+.+.|.+...+ .+|...+
T Consensus 2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN 35 (173)
T d1obfo1 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN 35 (173)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence 68999999999999999987543 4565554
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.089 Score=43.61 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=29.6
Q ss_pred CeE-EEEc-ccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 72 GRI-GFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 72 ~~I-giiG-~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
||| .|.| +|-||+.+++.|...|++|++.||.+.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~ 36 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 36 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 578 5777 699999999999999999999998653
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.79 E-value=0.074 Score=39.17 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=27.3
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
||.|||.|.+|..+|..|+. +.+|+++++.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 79999999999999999865 67999998754
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.70 E-value=0.37 Score=38.12 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=27.5
Q ss_pred EEEE-c-ccHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 74 IGFL-G-MGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 74 Igii-G-~G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
++|| | .+.||.++|+.|++.|++|.+.+|+.++
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~ 37 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG 37 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence 3444 5 5779999999999999999999998654
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=91.54 E-value=0.079 Score=43.79 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=30.6
Q ss_pred CeEEEEcccHhHHHHHHHHH-----HCCCeEEEEeCCccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLL-----KAGCDVTVWNRTKSK 106 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~-----~~g~~V~~~d~~~~~ 106 (290)
--|.|||.|..|..+|..|+ ..|++|+++++++..
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~ 47 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence 56999999999999999996 479999999987643
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=91.51 E-value=0.078 Score=43.19 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=31.5
Q ss_pred CCeEEEEccc---HhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G---~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
+|++.|.|.+ .||.++|+.|++.|++|.+.+|++.
T Consensus 8 gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~ 45 (297)
T d1d7oa_ 8 GKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA 45 (297)
T ss_dssp TCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence 8999999985 5999999999999999999988754
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.48 E-value=0.12 Score=42.61 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=29.6
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
|++.|.| +|-||+.+++.|...|++|++++|..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 6777888 69999999999999999999999854
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=91.40 E-value=1.4 Score=31.43 Aligned_cols=118 Identities=11% Similarity=0.105 Sum_probs=67.3
Q ss_pred HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCCh-----hHHHHHhcccccccc-c
Q 022909 81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP-----ESAMDVACGKHGAAS-G 154 (290)
Q Consensus 81 ~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~-----~~~~~~~~~~~~~~~-~ 154 (290)
.|...|++.+...|++|.+++.+....++ +...+.++|.|++.+|.. +..+.++. .+.. .
T Consensus 18 ~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~-----------~~~~~~~~d~ii~Gspt~~g~~~~~~~~~l~---~l~~~~ 83 (149)
T d1ycga1 18 KMAHALMDGLVAGGCEVKLFKLSVSDRND-----------VIKEILDARAVLVGSPTINNDILPVVSPLLD---DLVGLR 83 (149)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEGGGSCHHH-----------HHHHHHHCSEEEEECCCBTTBCCGGGHHHHH---HHHHHC
T ss_pred HHHHHHHHHHHhcCCeeEEEEccccchHH-----------HhhhhhhCCeEEEEeecccCCCCHHHHHHHH---HHhccc
Confidence 57888999999999999988765433221 223356799999999942 44555551 1111 1
Q ss_pred CC--CCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHh
Q 022909 155 MG--PGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIM 224 (290)
Q Consensus 155 ~~--~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~ 224 (290)
++ +..++-+. .......+.+.+.++..+...+..|.. ..-...++++.++++++-+.+
T Consensus 84 ~~~k~~~~fgs~-g~~g~a~~~l~~~l~~~g~~~v~~~~~-----------~~~~~P~~~dl~~~~e~g~~i 143 (149)
T d1ycga1 84 PKNKVGLAFGAY-GWGGGAQKILEERLKAAKIELIAEPGP-----------TVQWVPRGEDLQRCYELGRKI 143 (149)
T ss_dssp CSSCEEEEEEEE-SSSCCHHHHHHHHHHHTTCEESCSSCC-----------EEESSCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEecc-cCCchhHHHHHHHHHHCCCEEeccceE-----------EEcccCCHHHHHHHHHHHHHH
Confidence 22 22233222 222334567888888888777653311 111123456666666665554
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=91.40 E-value=0.086 Score=39.71 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=23.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC---CeEEEEe
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG---CDVTVWN 101 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g---~~V~~~d 101 (290)
+||||=|+|+||+.+.|.+.... .+|...+
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN 33 (172)
T d1rm4a1 1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN 33 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 58999999999999999887643 4555444
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.33 E-value=0.12 Score=41.05 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=34.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHH---CCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLK---AGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~---~g~~V~~~d~~~~~~~~~~ 111 (290)
+|+|.|.|. +.||.++|+.|.. .|++|++.+|++++.+.++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~ 46 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE 46 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence 578999985 8899999999964 6899999999988766543
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=91.28 E-value=0.1 Score=40.16 Aligned_cols=31 Identities=13% Similarity=0.048 Sum_probs=29.2
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCC
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT 103 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~ 103 (290)
-|.|||.|..|...|..++.+|.+|.++++.
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 4899999999999999999999999999875
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=91.22 E-value=0.066 Score=40.58 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=31.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
+++|.|||.|+.|..-|..+++.|.+|+++++.+
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~ 38 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME 38 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence 5789999999999999999999999999998754
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.06 E-value=0.087 Score=40.04 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=31.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
.++|.|||.|+.|..-|..+++.|.+|.++++..
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~ 38 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM 38 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence 5889999999999999999999999999998654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.02 E-value=0.25 Score=42.34 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=60.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC-----------CC-------------ccCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-----------GA-------------KYQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~-----------g~-------------~~~~~~~~~~ 125 (290)
+.+|.=|||| .|..+......+|+ +|+++|.++...+.+++. +. ......++.+
T Consensus 217 gd~fLDLGCG-~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~ 295 (406)
T d1u2za_ 217 GDTFMDLGSG-VGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELI 295 (406)
T ss_dssp TCEEEEESCT-TSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHG
T ss_pred CCEEEeCCCC-CcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccccc
Confidence 6889999999 56666666667776 799999997654433220 10 0112345667
Q ss_pred hcCCeEEEEe-CChhHHHHHhcccccccccCCCCCEEEEe
Q 022909 126 ASCDVTFAML-ADPESAMDVACGKHGAASGMGPGKGYVDV 164 (290)
Q Consensus 126 ~~aDivv~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lin~ 164 (290)
..+|+|++.. -..++....+ .+++..||||+.||..
T Consensus 296 ~~adVV~inn~~f~~~l~~~L---~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 296 PQCDVILVNNFLFDEDLNKKV---EKILQTAKVGCKIISL 332 (406)
T ss_dssp GGCSEEEECCTTCCHHHHHHH---HHHHTTCCTTCEEEES
T ss_pred ccceEEEEecccCchHHHHHH---HHHHHhcCCCcEEEEe
Confidence 8899998742 2345566666 4678899999988753
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=90.67 E-value=0.087 Score=43.06 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=29.7
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
++||.|.| +|.||+.+++.|...|+.|++.+...
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~ 36 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD 36 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch
Confidence 57999998 69999999999999999988776543
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.55 E-value=0.12 Score=39.74 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=30.4
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
--|.|||.|..|...|..++..|.+|.++++.+
T Consensus 4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 459999999999999999999999999998764
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.36 E-value=0.11 Score=40.26 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=30.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~ 103 (290)
...|.|||.|..|...|..+++.|.+|.++++.
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 467999999999999999999999999999865
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.09 E-value=0.18 Score=36.05 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=29.6
Q ss_pred CCeEEEEcccHhHHHHHHHHH----HCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL----KAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~----~~g~~V~~~d~~~~ 105 (290)
.++|.|||.|.+|..+|..|. ..|.+|++..+.+.
T Consensus 37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~ 75 (137)
T d1m6ia2 37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG 75 (137)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence 589999999999999998874 46899999987654
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=90.00 E-value=0.19 Score=40.12 Aligned_cols=105 Identities=20% Similarity=0.150 Sum_probs=64.7
Q ss_pred CCeEEEEcccH--hHHHHHHHHHHCCCeEEEEeCCccchhhHHh----CC----Cc-cCCCHHHHhh--cCCeEEEEeCC
Q 022909 71 PGRIGFLGMGI--MGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LG----AK-YQPSPDEVAA--SCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~--iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----~g----~~-~~~~~~~~~~--~aDivv~~~p~ 137 (290)
+++|.=+|+|. +...+|+.+.. +-+|+.+|++++..+.+++ .+ +. ...+..+.+. ..|.|++.+|.
T Consensus 86 G~rVLEiG~GsG~lt~~la~~v~~-~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~p~ 164 (250)
T d1yb2a1 86 GMDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPD 164 (250)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCSC
T ss_pred cCEEEEeeeeCcHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecCCc
Confidence 78999998764 44555555533 3489999999877665543 11 11 1123344333 36999999988
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcC
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG 183 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~ 183 (290)
+... + +...+.||||..++-. .......+.+.+++++.+
T Consensus 165 p~~~---l---~~~~~~LKpGG~lv~~-~P~i~Qv~~~~~~l~~~g 203 (250)
T d1yb2a1 165 PWNH---V---QKIASMMKPGSVATFY-LPNFDQSEKTVLSLSASG 203 (250)
T ss_dssp GGGS---H---HHHHHTEEEEEEEEEE-ESSHHHHHHHHHHSGGGT
T ss_pred hHHH---H---HHHHHhcCCCceEEEE-eCCcChHHHHHHHHHHCC
Confidence 7543 2 2346778999887643 223344556677777665
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=89.86 E-value=0.0086 Score=43.53 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=28.7
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCC
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLP 44 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~ 44 (290)
+...|+|++ +++|++++|+++++|++++.......+.|.
T Consensus 91 v~n~p~~~~---~vAE~a~~lil~~~R~i~~a~~g~~~~~~~ 129 (133)
T d1mx3a2 91 VCNVPAASV---YSEQASIEMREEAAREIRRAITGRIPDSLK 129 (133)
T ss_dssp EECCCSTTH---CCHHHHHHHHHHHHHHHHHHHHSCTTTTCS
T ss_pred EEcCCCCCc---hhHHHHHHHHHHHHhhHHHHHhccccchhh
Confidence 444555554 458999999999999999887766566554
|
| >d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Transcarbamylase-like protein species: Bacteroides fragilis [TaxId: 817]
Probab=89.81 E-value=0.34 Score=35.79 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEE
Q 022909 81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 133 (290)
Q Consensus 81 ~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~ 133 (290)
++..+++..+..+|+++.++.+..=..+.....++....+++++++++|+|..
T Consensus 20 ~Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~t 72 (161)
T d1js1x2 20 AVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYA 72 (161)
T ss_dssp HHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceee
Confidence 37889999999999999999986433222223457778899999999999975
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=89.74 E-value=0.16 Score=40.83 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=30.4
Q ss_pred CeEEEEcccHhHHHHHHHHHH-CCCeEEEEeCCcc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLK-AGCDVTVWNRTKS 105 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~-~g~~V~~~d~~~~ 105 (290)
..|.|||.|.-|...|..|++ .|++|.++++++.
T Consensus 34 ~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 559999999999999999986 5999999998764
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=89.63 E-value=0.058 Score=43.48 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=36.2
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhc--CCeEEEEe
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAML 135 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivv~~~ 135 (290)
|||.|.| .|-||+.+.+.|...|+.|. .+++..... ..+.-...+++++++ .|+|+-+.
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v~-~~~~~~~~~----~Dl~~~~~~~~~i~~~~~D~Vih~A 62 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLIA-LDVHSKEFC----GDFSNPKGVAETVRKLRPDVIVNAA 62 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEEE-ECTTCSSSC----CCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEE-EECCCcccc----CcCCCHHHHHHHHHHcCCCEEEEec
Confidence 6799999 59999999999998887554 444432210 011111234455554 48877543
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=89.48 E-value=0.18 Score=37.42 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=28.6
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCC
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT 103 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~ 103 (290)
.|.|||.|..|..-|..+.+.|.+|.+.+++
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 4899999999999999999999999999864
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=89.46 E-value=0.56 Score=34.18 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=23.7
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCC--CeEEEE
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAG--CDVTVW 100 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g--~~V~~~ 100 (290)
++|.|+| +|.||+.....++.+. ++|.+.
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~L 33 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVAL 33 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEE
T ss_pred CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEE
Confidence 6899999 6999999999998873 566544
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=89.08 E-value=0.22 Score=38.60 Aligned_cols=34 Identities=26% Similarity=0.234 Sum_probs=30.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
--|.|||.|.-|...|..++..|.+|.++++.+.
T Consensus 7 yDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~ 40 (229)
T d1ojta1 7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT 40 (229)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 4599999999999999999999999999987653
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=89.01 E-value=0.11 Score=43.17 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=26.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVW 100 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~ 100 (290)
+|+|.|.| +|-||+.+++.|...|++|.++
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~ 32 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVT 32 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEE
Confidence 68999999 7999999999999989865544
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=88.68 E-value=0.18 Score=37.54 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=25.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC-CeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNR 102 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~ 102 (290)
+||||=|+|+||+.+.|.+.... .+|...+-
T Consensus 2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd 33 (166)
T d1gado1 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND 33 (166)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeC
Confidence 68999999999999999988764 57766664
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.67 E-value=1.9 Score=30.20 Aligned_cols=108 Identities=13% Similarity=0.127 Sum_probs=70.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEE-EEeCCccchhhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~~ 146 (290)
..||.|-|. |+.|+..++...+.|-+|. .+.+. +.-. .-.|+..+++..|+.+ ++|.=++-+|.+.....++.
T Consensus 15 ~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPg--KgG~-~~~giPVf~tV~eA~~~~~~daSvIfVPp~~a~dAi~E 91 (130)
T d1euca1 15 NTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPG--KGGK-THLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINE 91 (130)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTT--CTTC-EETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccC--CCCc-cccCccchhhHHHHHHhcCCcEEEEecCHHHHHHHHHH
Confidence 578999996 9999999999999998865 44443 2211 1246788889999887 58998999987665555542
Q ss_pred ccccccccCCCCCEEEEec-CCChhHHHHHHHHHHHc-CCcEE
Q 022909 147 GKHGAASGMGPGKGYVDVS-TVDGDTSKLINGHIKAT-GASFL 187 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s-~~~~~~~~~l~~~l~~~-~~~~~ 187 (290)
.+-..+ ..+|-++ ..++.|...+.+.+.+. +.+++
T Consensus 92 ---Ai~agI---~liV~ITEgIPv~Dm~~i~~~~~~~~~~~li 128 (130)
T d1euca1 92 ---AIDAEV---PLVVCITEGIPQQDMVRVKHRLLRQGKTRLI 128 (130)
T ss_dssp ---HHHTTC---SEEEECCCCCCHHHHHHHHHHHTTCSSCEEE
T ss_pred ---HHhCCC---CEEEEecCCCCHHHHHHHHHHHHhCCCcEEe
Confidence 111222 2344444 45556666676655433 45554
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=88.49 E-value=0.24 Score=36.96 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=23.6
Q ss_pred eEEEEcccHhHHHHHHHHHHC---CCeEEEEe
Q 022909 73 RIGFLGMGIMGTPMAQNLLKA---GCDVTVWN 101 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~---g~~V~~~d 101 (290)
||||=|+|+||+.+.+.+... +.+|...+
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaIN 33 (169)
T d1hdgo1 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIN 33 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred EEEEECCChHHHHHHHHHHhccCCCEEEEEec
Confidence 799999999999999998753 35766554
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=88.45 E-value=1.7 Score=30.40 Aligned_cols=87 Identities=20% Similarity=0.183 Sum_probs=56.9
Q ss_pred CCeEEEEcccH-----------hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCCh-
Q 022909 71 PGRIGFLGMGI-----------MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP- 138 (290)
Q Consensus 71 ~~~IgiiG~G~-----------iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~- 138 (290)
.+||.|||.|. .+...++.|++.|+++++.+.||+... ++. .-+|-+.+- |.+
T Consensus 7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVs----------td~----d~aD~lYfe-Plt~ 71 (127)
T d1a9xa3 7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIM----------TDP----EMADATYIE-PIHW 71 (127)
T ss_dssp CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGG----------GCG----GGSSEEECS-CCCH
T ss_pred CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhh----------cCh----hhcceeeee-cCCH
Confidence 58999999975 467788889999999999999997532 122 247777654 443
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT 182 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~ 182 (290)
+.+..++ +.=+|+.++. ..+....-.+...|.+.
T Consensus 72 e~v~~Ii-------~~E~pd~il~---~~GGQtalnla~~L~~~ 105 (127)
T d1a9xa3 72 EVVRKII-------EKERPDAVLP---TMGGQTALNCALELERQ 105 (127)
T ss_dssp HHHHHHH-------HHHCCSEEEC---SSSHHHHHHHHHHHHHT
T ss_pred HHHHHHH-------HHhCcCCeEE---EeeeehHhHHHHHHHHc
Confidence 4555555 3336777775 34444444455555443
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=88.42 E-value=0.25 Score=39.18 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=30.8
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCC-eEEEEeCCccch
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGC-DVTVWNRTKSKC 107 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~-~V~~~d~~~~~~ 107 (290)
+.++.|.| .|.||+++|+.|.+.|. +|.++.|+..+.
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~ 47 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDA 47 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGS
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCH
Confidence 46899998 69999999999999998 588888875443
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.20 E-value=0.27 Score=37.61 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=29.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT 103 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~ 103 (290)
--+.|||.|..|...|..++..|.+|.+.++.
T Consensus 4 yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~ 35 (221)
T d3grsa1 4 YDYLVIGGGSGGLASARRAAELGARAAVVESH 35 (221)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 34899999999999999999999999999864
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.09 E-value=0.22 Score=38.60 Aligned_cols=33 Identities=21% Similarity=0.119 Sum_probs=30.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
--|.|||.|.-|...|..+++.|.+|.+++..+
T Consensus 4 YDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~ 36 (235)
T d1h6va1 4 FDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36 (235)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 459999999999999999999999999999654
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.03 E-value=0.45 Score=35.25 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=45.7
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHCCCeEEEEeCCccch-----hh----HHhCC--CccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKC-----DP----LISLG--AKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~g~~V~~~d~~~~~~-----~~----~~~~g--~~~~~~~~~~~~~aDivv~~~p 136 (290)
++||+++|-| ++..+++..+..+|+++.++.+..-.. +. ..+.| +....++++.++.+|+|.....
T Consensus 4 gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~~ 81 (170)
T d1otha2 4 GLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTW 81 (170)
T ss_dssp TCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCS
T ss_pred CCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeece
Confidence 8999999964 455666666677899999888752221 11 11122 4567899999999999987653
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.00 E-value=0.18 Score=42.90 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=31.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHH------CCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK------AGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~------~g~~V~~~d~~~~ 105 (290)
.--|.|||.|.-|.+.|..|++ .|++|++.++...
T Consensus 32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~ 72 (380)
T d2gmha1 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72 (380)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence 3569999999999999999986 7999999998754
|
| >d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Molybdenum cofactor biosynthesis proteins superfamily: Molybdenum cofactor biosynthesis proteins family: MoeA central domain-like domain: Gephyrin, domain 5 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.83 E-value=0.44 Score=34.82 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=35.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeC
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p 136 (290)
+..++..+...|++|..+..-++..+.+.+ .++++++++|+|+++--
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~-------~l~~~~~~~DliittGG 75 (155)
T d2ftsa3 29 RSTLLATIQEHGYPTINLGIVGDNPDDLLN-------ALNEGISRADVIITSGG 75 (155)
T ss_dssp HHHHHHHHHTTTCCEEEEEEECSSHHHHHH-------HHHHHHHHCSEEEEESC
T ss_pred HHHHHHHhcccccceEEEEEecCchhHHHH-------HHHHhhcccCEEEEecc
Confidence 577888999999998877766666565544 46677888999987654
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.50 E-value=0.43 Score=34.82 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=29.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~ 104 (290)
+++|.|||.|+.|.-.|..+.+.|.+ |+++.|.+
T Consensus 45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 57899999999999999999999874 77776653
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=87.49 E-value=0.29 Score=39.70 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=30.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
--|.|||.|..|...|..+++.|.+|++.++.+
T Consensus 17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 459999999999999999999999999999865
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=87.47 E-value=0.57 Score=37.55 Aligned_cols=105 Identities=15% Similarity=0.115 Sum_probs=64.4
Q ss_pred CCeEEEEcccH--hHHHHHHHHHHCCCeEEEEeCCccchhhHHh----CCCc-----cCCCHHHHh--hcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGI--MGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LGAK-----YQPSPDEVA--ASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~--iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----~g~~-----~~~~~~~~~--~~aDivv~~~p~ 137 (290)
+++|.=+|+|. +...+|+.+. .+.+|+.+|.+++..+.+++ .+.. ...+..+-+ ...|.|++.+|.
T Consensus 104 G~~VLDiG~GsG~lt~~lA~~~~-~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d~p~ 182 (266)
T d1o54a_ 104 GDRIIDTGVGSGAMCAVLARAVG-SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPD 182 (266)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTT-TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCSC
T ss_pred CCEEEECCCCCCHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEecCCC
Confidence 78999999765 3344444332 24589999999887665443 3321 112222222 347999999998
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcC
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG 183 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~ 183 (290)
+...- +++...||||..++-.+ ......+.+.+.+++.+
T Consensus 183 p~~~l------~~~~~~LKpGG~lv~~~-P~~~Qv~~~~~~l~~~g 221 (266)
T d1o54a_ 183 PWNYI------DKCWEALKGGGRFATVC-PTTNQVQETLKKLQELP 221 (266)
T ss_dssp GGGTH------HHHHHHEEEEEEEEEEE-SSHHHHHHHHHHHHHSS
T ss_pred HHHHH------HHHHhhcCCCCEEEEEe-CcccHHHHHHHHHHHCC
Confidence 76432 23467788988776432 23444567778887765
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=87.35 E-value=0.18 Score=39.76 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=55.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh----CC--Cc-cCCCHHHH-h-hcCCeEEEE------e
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LG--AK-YQPSPDEV-A-ASCDVTFAM------L 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----~g--~~-~~~~~~~~-~-~~aDivv~~------~ 135 (290)
+++|.=||||. | .++..|+..|.+|+++|.+++-++.+++ .+ +. ...+..++ + +.-|+|+.. +
T Consensus 38 ~~~vLDiGCG~-G-~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~~ 115 (246)
T d1y8ca_ 38 FDDYLDLACGT-G-NLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYI 115 (246)
T ss_dssp TTEEEEETCTT-S-TTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGC
T ss_pred CCeEEEEeCcC-C-HHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeecc
Confidence 57899999983 3 3566677789999999999876544332 22 22 22344433 1 235888752 3
Q ss_pred CChhHHHHHhcccccccccCCCCCEE-EEe
Q 022909 136 ADPESAMDVACGKHGAASGMGPGKGY-VDV 164 (290)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~~~~~~~l-in~ 164 (290)
+.+++...++ +++.+.|+||..+ +++
T Consensus 116 ~~~~~~~~~l---~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 116 IDSDDLKKYF---KAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CSHHHHHHHH---HHHHTTEEEEEEEEEEE
T ss_pred CCHHHHHHHH---HHHHHhCCCCeEEEEEe
Confidence 4455666666 5567888987765 444
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.33 E-value=0.31 Score=39.20 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=65.4
Q ss_pred CCeEEEEcc--cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh----C------CCc-cCCCHHHH-h--hcCCeEEEE
Q 022909 71 PGRIGFLGM--GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----L------GAK-YQPSPDEV-A--ASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~--G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----~------g~~-~~~~~~~~-~--~~aDivv~~ 134 (290)
+++|.=+|+ |.+...+|+.+...| +|+.+|.+++..+.+++ . .+. ...+..+. + ...|.|++.
T Consensus 97 G~~VLE~G~GsG~lt~~La~~vgp~G-~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~ld 175 (264)
T d1i9ga_ 97 GARVLEAGAGSGALTLSLLRAVGPAG-QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLD 175 (264)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEE
T ss_pred CCEEEecCcCCcHHHHHHHHhhCCCc-EEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEEe
Confidence 688988886 566666666665544 79999999877665543 1 111 11222221 1 346999999
Q ss_pred eCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc
Q 022909 135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT 182 (290)
Q Consensus 135 ~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~ 182 (290)
+|.+.+.-. .....||||..++-. .......+...++++..
T Consensus 176 lp~P~~~l~------~~~~~LkpGG~lv~~-~P~i~Qv~~~~~~l~~~ 216 (264)
T d1i9ga_ 176 MLAPWEVLD------AVSRLLVAGGVLMVY-VATVTQLSRIVEALRAK 216 (264)
T ss_dssp SSCGGGGHH------HHHHHEEEEEEEEEE-ESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHH------HHHhccCCCCEEEEE-eCccChHHHHHHHHHHc
Confidence 998865433 235678898877644 24444556777788644
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=87.16 E-value=0.47 Score=35.34 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=24.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHC-CCeEEEEe
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA-GCDVTVWN 101 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~-g~~V~~~d 101 (290)
-||||=|+|+||+.+.+.+... ..+|...+
T Consensus 2 ikIgINGFGRIGR~v~R~~~~~~~~~ivaIN 32 (169)
T d1u8fo1 2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN 32 (169)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred cEEEEECCcHHHHHHHHHHHHCCCcEEEEec
Confidence 5899999999999999988755 46776554
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.15 E-value=0.35 Score=39.94 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=28.1
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRT 103 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~ 103 (290)
|.|.|.| .|-||+.+++.|.+.|++|++.|+.
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~ 34 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNL 34 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECC
Confidence 4588887 6999999999999999999999863
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=86.98 E-value=0.65 Score=33.78 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=24.7
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHC--CCeEEEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKA--GCDVTVW 100 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~--g~~V~~~ 100 (290)
+++|+|+| +|.||+.....+..+ .++|.+.
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~l 34 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIAL 34 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEE
Confidence 58999999 699999999999876 3566544
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=86.81 E-value=0.31 Score=40.34 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=30.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~ 103 (290)
.--+.|||.|.-|..+|.+|++.|++|++..+-
T Consensus 4 ~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG 36 (379)
T d2f5va1 4 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIG 36 (379)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cccEEEECcCHHHHHHHHHHhhCCCeEEEEecC
Confidence 456999999999999999999999999999863
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.63 E-value=0.32 Score=37.11 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=30.1
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
..|.|||.|..|...|..+++.|.+|.++++..
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~ 36 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence 569999999999999999999999999998753
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=86.19 E-value=0.44 Score=39.91 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=28.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHH-CCCeEEEEeC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLK-AGCDVTVWNR 102 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~-~g~~V~~~d~ 102 (290)
.|||.|.| +|-||+.+++.|.+ .|++|++.|+
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~ 35 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS 35 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence 58999998 69999999999874 7999999984
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=86.14 E-value=0.47 Score=33.35 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=32.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
+++|+|||.|+.+..-|..|....-+|+++-|.++
T Consensus 27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~ 61 (126)
T d1trba2 27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 61 (126)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence 79999999999999999999999899999988754
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.13 E-value=0.51 Score=36.41 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=28.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC---eEEEEeCCccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRTKSK 106 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~---~V~~~d~~~~~ 106 (290)
..||.|||.|.-|..++.++...|. +.++.|.+.+.
T Consensus 15 ~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~ 53 (209)
T d2vapa1 15 KAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQ 53 (209)
T ss_dssp CCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHH
T ss_pred CCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHH
Confidence 5799999999999999999988764 55666765443
|
| >d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Flavodoxin FldA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.82 E-value=5.1 Score=29.66 Aligned_cols=95 Identities=7% Similarity=-0.064 Sum_probs=56.0
Q ss_pred cHhHHHHHHHHHH-CCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCC-----hhHHHHHhccc-cccc
Q 022909 80 GIMGTPMAQNLLK-AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD-----PESAMDVACGK-HGAA 152 (290)
Q Consensus 80 G~iG~~la~~l~~-~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~-----~~~~~~~~~~~-~~~~ 152 (290)
-.|..++++.+.. .|.+|.+.+.... +.++ +.++|.|++.+|. +..++.++..- ....
T Consensus 16 ~~~A~~ia~g~~~~~g~~v~~~~~~~~--------------~~~d-l~~~d~iiiGsPty~g~~~~~~~~fld~~~~~~~ 80 (184)
T d2arka1 16 KKMAELVAEGARSLEGTEVRLKHVDEA--------------TKED-VLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLW 80 (184)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEETTTC--------------CHHH-HHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTT
T ss_pred HHHHHHHHHhhhhccCceEEEeecccc--------------cccc-hhhCcEEEEecCccccccCHHHHHHHHHHHHHHH
Confidence 4577788888876 5889988875421 3444 4589999999995 35566666210 0111
Q ss_pred ccC--CCCCEEEEecCC--C-hhHHHHHHHHHHHcCCcEEeC
Q 022909 153 SGM--GPGKGYVDVSTV--D-GDTSKLINGHIKATGASFLEA 189 (290)
Q Consensus 153 ~~~--~~~~~lin~s~~--~-~~~~~~l~~~l~~~~~~~~~~ 189 (290)
..+ |+.+.+.+.+.. + ......+.+.+...|..++..
T Consensus 81 ~~l~gK~~a~f~s~g~~~gG~e~al~~~~~~l~~~G~~vvg~ 122 (184)
T d2arka1 81 GEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVFGV 122 (184)
T ss_dssp TSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEECCE
T ss_pred HHhCCeEEEEEEccCCCCccHHHHHHHhhhHhhhCCCEEecc
Confidence 222 233345544321 1 223456777777788877653
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.74 E-value=0.2 Score=40.69 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=26.2
Q ss_pred CeEEEE-c-ccHhHHHHHHHHHHCCCeEEEE---eCCccc
Q 022909 72 GRIGFL-G-MGIMGTPMAQNLLKAGCDVTVW---NRTKSK 106 (290)
Q Consensus 72 ~~Igii-G-~G~iG~~la~~l~~~g~~V~~~---d~~~~~ 106 (290)
+||.+| | .+.||+++|+.|+..|.+|... .++.+.
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~ 41 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKT 41 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGG
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhh
Confidence 677776 6 6899999999999999875544 444443
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=85.35 E-value=0.42 Score=39.91 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=26.7
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCe-EEEEeCC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCD-VTVWNRT 103 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~-V~~~d~~ 103 (290)
|||.|.| +|-||+.+++.|...|++ |.+.|+.
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~ 34 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL 34 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 6899998 699999999999999997 4566653
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=85.34 E-value=0.55 Score=35.78 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=27.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC---eEEEEeCCccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRTKSK 106 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~---~V~~~d~~~~~ 106 (290)
+||-|||.|.-|..++.++...|. +.++.|.+.+.
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~ 38 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQV 38 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHH
T ss_pred CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHH
Confidence 479999999999999999988664 55667765443
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=85.15 E-value=0.42 Score=36.10 Aligned_cols=88 Identities=20% Similarity=0.271 Sum_probs=51.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh----CCCc----cCCCHHHHh--hcCCeEEEEeCC---
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LGAK----YQPSPDEVA--ASCDVTFAMLAD--- 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----~g~~----~~~~~~~~~--~~aDivv~~~p~--- 137 (290)
+.+|.=|||| .|. .+..|+..|.+|+++|.++...+.+++ .++. ...++.++. ..-|+|+.....
T Consensus 31 ~grvLDiGcG-~G~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 108 (198)
T d2i6ga1 31 PGRTLDLGCG-NGR-NSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFL 108 (198)
T ss_dssp SCEEEEETCT-TSH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGGS
T ss_pred CCcEEEECCC-CCH-HHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeecC
Confidence 5689999999 555 566777889999999999876554332 2322 112222211 234777653321
Q ss_pred -hhHHHHHhcccccccccCCCCCEEEE
Q 022909 138 -PESAMDVACGKHGAASGMGPGKGYVD 163 (290)
Q Consensus 138 -~~~~~~~~~~~~~~~~~~~~~~~lin 163 (290)
+++...++ +++...++|+.+++-
T Consensus 109 ~~~~~~~~l---~~~~~~L~pgG~~~~ 132 (198)
T d2i6ga1 109 EAQTIPGLI---ANMQRCTKPGGYNLI 132 (198)
T ss_dssp CTTHHHHHH---HHHHHTEEEEEEEEE
T ss_pred CHHHHHHHH---HHHHHHcCCCcEEEE
Confidence 13334455 345666777765543
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=85.08 E-value=0.49 Score=37.39 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=28.6
Q ss_pred EEEEcccHhHHHHHHHHHHCCCeEEEEeCC
Q 022909 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRT 103 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~g~~V~~~d~~ 103 (290)
+.|||.|.-|...|..++..|.+|.+.++.
T Consensus 4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~ 33 (259)
T d1onfa1 4 LIVIGGGSGGMAAARRAARHNAKVALVEKS 33 (259)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 789999999999999999999999999975
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.87 E-value=0.68 Score=34.29 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=24.1
Q ss_pred eEEEEcccHhHHHHHHHHHHC-CCeEEEEe
Q 022909 73 RIGFLGMGIMGTPMAQNLLKA-GCDVTVWN 101 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~-g~~V~~~d 101 (290)
||||=|+|+||+.+.+.+... ..+|...+
T Consensus 2 kigINGfGRIGR~v~R~~~~~~~~~iv~IN 31 (166)
T d2b4ro1 2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIN 31 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred eEEEECCCHHHHHHHHHHhhCCCcEEEEEC
Confidence 799999999999999998865 46766654
|
| >d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Quinone reductase domain: Quinone reductase type 2 (menadione reductase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.81 E-value=2.1 Score=32.81 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=45.7
Q ss_pred CCeEEEE-cc-------cHhHHHHHHHHHHCCCeEEEEeCCccchhh---HHhC---------------------CCccC
Q 022909 71 PGRIGFL-GM-------GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP---LISL---------------------GAKYQ 118 (290)
Q Consensus 71 ~~~Igii-G~-------G~iG~~la~~l~~~g~~V~~~d~~~~~~~~---~~~~---------------------g~~~~ 118 (290)
+|||.|| |. ..+...+.+.+.+.|++|.+.|-.....+. .... .....
T Consensus 2 ~mKiLiI~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (230)
T d2qwxa1 2 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLA 81 (230)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBC
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCEEEEEEccccCCcccchHHHhhhccCchhhhcchhhhhhhhhccccc
Confidence 5777666 32 456667777788899999998865432111 0000 00011
Q ss_pred C---CHHHHhhcCCeEEEEeC-----ChhHHHHHh
Q 022909 119 P---SPDEVAASCDVTFAMLA-----DPESAMDVA 145 (290)
Q Consensus 119 ~---~~~~~~~~aDivv~~~p-----~~~~~~~~~ 145 (290)
+ ...+.+..||.||+..| .+...+..+
T Consensus 82 ~di~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~i 116 (230)
T d2qwxa1 82 SDITDEQKKVREADLVIFQFPLYWFSVPAILKGWM 116 (230)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEEeCcccccCCHHHHHHH
Confidence 1 22345778999999999 456777777
|
| >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Clostridium beijerinckii [TaxId: 1520]
Probab=84.57 E-value=4.7 Score=27.87 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=54.0
Q ss_pred HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChh-------HHHHHhcccccccc
Q 022909 81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE-------SAMDVACGKHGAAS 153 (290)
Q Consensus 81 ~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~-------~~~~~~~~~~~~~~ 153 (290)
.+...+++.+...|.+|.+++.+.. +.++ +.++|.+++.+|... .....+ +....
T Consensus 14 ~vA~~ia~~l~~~g~~v~~~~~~~~--------------~~~~-l~~~~~~i~g~pt~~~g~~p~~~~~~~~---~~~~~ 75 (138)
T d5nula_ 14 KMAELIAKGIIESGKDVNTINVSDV--------------NIDE-LLNEDILILGCSAMTDEVLEESEFEPFI---EEIST 75 (138)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEGGGC--------------CHHH-HTTCSEEEEEECCBTTTBCCTTTHHHHH---HHHGG
T ss_pred HHHHHHHHHHHhcCCcceecccccc--------------cccc-cccCCeEEEEEeccCCCCCChHHHHHHH---HHhCc
Confidence 4678888888889999888875431 2334 457999999998531 233333 11112
Q ss_pred cCC--CCCEEEEecCCChhHHHHHHHHHHHcCCcEEeC
Q 022909 154 GMG--PGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189 (290)
Q Consensus 154 ~~~--~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~ 189 (290)
.++ +-.++...+.+...-.+.+.+.+...|...+..
T Consensus 76 ~~~gk~~~~f~s~g~~~~~~~~~~~~~l~~~G~~~v~~ 113 (138)
T d5nula_ 76 KISGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVET 113 (138)
T ss_dssp GCTTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSC
T ss_pred cCCCCcEEEEEEecCCCCHHHHHHHHHHHHCCCEEecC
Confidence 222 223343333333445567788888887766543
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=84.49 E-value=0.46 Score=38.78 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=30.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
.-|.|||.|.-|...|..|++.|.+|++.++.+.
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~ 57 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI 57 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3599999999999999999999999999998653
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=84.46 E-value=0.95 Score=35.22 Aligned_cols=88 Identities=13% Similarity=0.057 Sum_probs=54.3
Q ss_pred CCeEEEEccc--HhHHHHHHHHHHCCCeEEEEeCCccchhhHHh----CC-Ccc----C---CCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LG-AKY----Q---PSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G--~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----~g-~~~----~---~~~~~~~~~aDivv~~~p 136 (290)
+++|.=+|+| ..-..+++..- .+-+|+++|.++...+.+.+ .+ +.. . ..........|+|+.-++
T Consensus 74 G~~VLDlGaGsG~~t~~la~~VG-~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~ 152 (227)
T d1g8aa_ 74 GKSVLYLGIASGTTASHVSDIVG-WEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA 152 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CCEEEEeccCCCHHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEcc
Confidence 7999999875 44444555432 23589999999877665544 11 110 1 111222345688888777
Q ss_pred ChhHHHHHhcccccccccCCCCCEEE
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
.+.+...++ ++....+|+|..++
T Consensus 153 ~~~~~~~~l---~~~~~~LkpgG~lv 175 (227)
T d1g8aa_ 153 QPTQAKILI---DNAEVYLKRGGYGM 175 (227)
T ss_dssp STTHHHHHH---HHHHHHEEEEEEEE
T ss_pred ccchHHHHH---HHHHHhcccCCeEE
Confidence 766666666 44566788888654
|
| >d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Putative arsenical resistance protein species: Shigella flexneri [TaxId: 623]
Probab=84.13 E-value=3.6 Score=31.91 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=44.0
Q ss_pred CCeEEEE-cc---c----HhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCC----
Q 022909 71 PGRIGFL-GM---G----IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLAD---- 137 (290)
Q Consensus 71 ~~~Igii-G~---G----~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~---- 137 (290)
..||.+| |. + .+...+++.+...|++|.++|...-....... .....+..+.+.+.++|-||++.|.
T Consensus 34 ~~KIl~I~GS~R~~s~s~~la~~~~~~l~~~G~ev~~idL~dlpl~~~~~~~~~~~v~~l~~~l~~AD~vIi~tP~Y~~~ 113 (233)
T d2fzva1 34 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQ 113 (233)
T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHhhhcCeEEEEEccCCCCCCCcccccCCHHHHHHHHHHhhcCeeEEEccccccC
Confidence 4565555 53 3 33344455667789999999875432211111 0111122455667889999999995
Q ss_pred -hhHHHHHh
Q 022909 138 -PESAMDVA 145 (290)
Q Consensus 138 -~~~~~~~~ 145 (290)
+..++.++
T Consensus 114 ~~~~lKn~i 122 (233)
T d2fzva1 114 ITSVMKAQI 122 (233)
T ss_dssp ECHHHHHHH
T ss_pred cHHHHHhhH
Confidence 45677777
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=84.01 E-value=0.52 Score=35.84 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=30.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
--|.|||.|.-|..-|..+++.|.+|.++++.+
T Consensus 4 YDviIIGgGpAGl~aA~~aar~G~~V~viE~~~ 36 (229)
T d3lada1 4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36 (229)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 459999999999999999999999999999754
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=83.54 E-value=0.16 Score=39.54 Aligned_cols=91 Identities=11% Similarity=0.135 Sum_probs=54.8
Q ss_pred CCeEEEEcc--cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh----CCCc-----cCCCHHHH-hhcCCeEEEEeC--
Q 022909 71 PGRIGFLGM--GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LGAK-----YQPSPDEV-AASCDVTFAMLA-- 136 (290)
Q Consensus 71 ~~~IgiiG~--G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----~g~~-----~~~~~~~~-~~~aDivv~~~p-- 136 (290)
+.+|.=||| |.+...+++.+...+.+|++.|.+++-++.+++ .+.. ...+..+. ....|+++...-
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~ 119 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 119 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence 578999998 666666676655578899999999876655443 1111 11122111 234576655422
Q ss_pred --ChhHHHHHhcccccccccCCCCCEEEEe
Q 022909 137 --DPESAMDVACGKHGAASGMGPGKGYVDV 164 (290)
Q Consensus 137 --~~~~~~~~~~~~~~~~~~~~~~~~lin~ 164 (290)
..++...++ +++.+.|+||..+|..
T Consensus 120 ~~~~~d~~~~l---~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 120 FLPPEDRIALL---TKIYEGLNPNGVLVLS 146 (225)
T ss_dssp GSCGGGHHHHH---HHHHHHEEEEEEEEEE
T ss_pred ccChhhHHHHH---HHHHHhCCCCceeecc
Confidence 123444555 5677889998877643
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=83.29 E-value=0.56 Score=38.83 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=28.7
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCC
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT 103 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~ 103 (290)
.|.|||.|.-|..+|.+|++.|++|++..+-
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence 3889999999999999999999999999873
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.21 E-value=0.42 Score=38.97 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=30.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHH--CCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK--AGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~--~g~~V~~~d~~~~ 105 (290)
...|.|||.|.-|...|..|+. .|++|.++++++.
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 86 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 86 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence 4679999999999999999985 4999999998754
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.01 E-value=1.3 Score=33.59 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=26.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWN 101 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d 101 (290)
+||||||-+ |++ +.+.+.|...|.++.+.+
T Consensus 6 ~mkIgii~~~Gn~-~s~~~al~~~G~~~~~v~ 36 (202)
T d1q7ra_ 6 NMKIGVLGLQGAV-REHVRAIEACGAEAVIVK 36 (202)
T ss_dssp CCEEEEESCGGGC-HHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEEECCCCH-HHHHHHHHHCCCcEEEEC
Confidence 799999998 998 667899999999888764
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=82.86 E-value=0.18 Score=41.34 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.8
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeE
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDV 97 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V 97 (290)
|||.|.| +|-||+.+++.|...|++|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v 27 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPD 27 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 6899998 6999999999999988743
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.81 E-value=0.52 Score=36.73 Aligned_cols=87 Identities=18% Similarity=0.178 Sum_probs=53.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh----CC--Cc-cCCCHHHHh--hcCCeEEEEe-----C
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LG--AK-YQPSPDEVA--ASCDVTFAML-----A 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----~g--~~-~~~~~~~~~--~~aDivv~~~-----p 136 (290)
.++|.=||||. |. ++..|+..|.+|+++|.+++-++.+++ .+ +. ...+.+++- ...|+|++.. .
T Consensus 42 ~~~iLDiGcGt-G~-~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~~~ 119 (251)
T d1wzna1 42 VRRVLDLACGT-GI-PTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYF 119 (251)
T ss_dssp CCEEEEETCTT-CH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGGS
T ss_pred CCEEEEeCCCC-Cc-cchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhhhcC
Confidence 57899999996 54 455677789999999999866554433 22 21 122333321 2357776542 1
Q ss_pred ChhHHHHHhcccccccccCCCCCEEE
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
..++....+ +++.+.|+||.++|
T Consensus 120 ~~~~~~~~L---~~~~~~LkpgG~li 142 (251)
T d1wzna1 120 DEEDLRKLF---SKVAEALKPGGVFI 142 (251)
T ss_dssp CHHHHHHHH---HHHHHHEEEEEEEE
T ss_pred ChHHHHHHH---HHHHHHcCCCcEEE
Confidence 223444555 45677788887654
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=82.58 E-value=0.5 Score=35.21 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=25.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHC-CCeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNR 102 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~-g~~V~~~d~ 102 (290)
-||||=|+|+||+.+.+.+... ..+|...+-
T Consensus 2 ikIgINGfGRIGR~v~R~~l~~~~~~ivaINd 33 (171)
T d3cmco1 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND 33 (171)
T ss_dssp EEEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEcC
Confidence 3799999999999999998765 457766653
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.39 E-value=0.9 Score=34.92 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=28.4
Q ss_pred CCeEEEEcccHhHHHHHHHHH--------------------HCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL--------------------KAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~--------------------~~g~-~V~~~d~~~ 104 (290)
+++|.|||.|+.+.-+|+.+. ..|. +|.++.|+.
T Consensus 39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg 93 (216)
T d1lqta1 39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG 93 (216)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence 799999999999999999887 4555 688887764
|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.21 E-value=6.3 Score=27.58 Aligned_cols=107 Identities=7% Similarity=-0.049 Sum_probs=59.4
Q ss_pred CCeEEEE-c--c---cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCCh-----h
Q 022909 71 PGRIGFL-G--M---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP-----E 139 (290)
Q Consensus 71 ~~~Igii-G--~---G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~-----~ 139 (290)
..||.|| | . -.|...+++.|...|++|.+++.+......+. +..+-+.++|.+++..|.- +
T Consensus 3 ~~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~--------~~~~~l~~~d~iiigspt~~~~~~~ 74 (148)
T d1vmea1 3 KGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAIS--------EILKDIPDSEALIFGVSTYEAEIHP 74 (148)
T ss_dssp TTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHH--------HHHHHSTTCSEEEEEECEETTEECH
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEecccccccchh--------HhhhhHHHCCEeEEEecccCCccCc
Confidence 4566666 3 2 35788888888899999998876543211111 1223367899999999832 3
Q ss_pred HHHHHhcccccccc-cCCCCCEEEEecCC-ChhHHHHHHHHHHHcCCcEEe
Q 022909 140 SAMDVACGKHGAAS-GMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 140 ~~~~~~~~~~~~~~-~~~~~~~lin~s~~-~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.....+. .+.. .++...+.+-.+.+ .....+.+.+.+.+.|..++.
T Consensus 75 ~~~~~l~---~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~G~~~v~ 122 (148)
T d1vmea1 75 LMRFTLL---EIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILS 122 (148)
T ss_dssp HHHHHHH---HHHHHCCCCCEEEEEEECCCCCCC-CCHHHHHHTSSCEEEE
T ss_pred hHHHHHH---HHhhcccCCCEEEEEEcCCCccchHHHHHHHHHHcCCcEEe
Confidence 4455541 1112 22222222222222 223345677778777776654
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=81.60 E-value=1.4 Score=34.08 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=23.9
Q ss_pred EEEEcccHhHHHHHHHHHHCCCeEEEEeC
Q 022909 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNR 102 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~g~~V~~~d~ 102 (290)
|.=--.|.||.+||+.+...|++|+++.-
T Consensus 26 ItN~SSGk~G~aiA~~~~~~Ga~V~li~g 54 (223)
T d1u7za_ 26 ISDHSSGKMGFAIAAAAARRGANVTLVSG 54 (223)
T ss_dssp EEECCCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred eccCCcHHHHHHHHHHHHHcCCchhhhhc
Confidence 33345799999999999999999987654
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.54 E-value=0.92 Score=35.13 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=29.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHH--------------------CCC-eEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK--------------------AGC-DVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~--------------------~g~-~V~~~d~~~~ 105 (290)
+++|.|||.|+++.-+|+.+.+ .|. +|.++.|+..
T Consensus 39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~ 94 (225)
T d1cjca1 39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 94 (225)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence 7999999999999999999987 354 7888887753
|
| >d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Myo-inositol 1-phosphate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.05 E-value=4.3 Score=31.43 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=19.2
Q ss_pred CCeEEEEcccHhHHHHHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL 91 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~ 91 (290)
.-||+|+|.|+.++++++.+.
T Consensus 2 kIrVaIvGvGNcASslvqGie 22 (243)
T d1gr0a1 2 EVRVAIVGVGNCASSLVQGVE 22 (243)
T ss_dssp CEEEEEECCSHHHHHHHHHHH
T ss_pred ceEEEEEcchHHHHHHHHHHH
Confidence 468999999999999999985
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.04 E-value=2.2 Score=34.13 Aligned_cols=87 Identities=11% Similarity=-0.009 Sum_probs=53.7
Q ss_pred CCeEEEEcccHhHHHHHHHH-HHCCCeEEEEeCCccchhhHHh----CCCc-----cCCCHHHHhhcCCeEEEEeCC---
Q 022909 71 PGRIGFLGMGIMGTPMAQNL-LKAGCDVTVWNRTKSKCDPLIS----LGAK-----YQPSPDEVAASCDVTFAMLAD--- 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l-~~~g~~V~~~d~~~~~~~~~~~----~g~~-----~~~~~~~~~~~aDivv~~~p~--- 137 (290)
+++|.=||||.=| ++..+ ...|.+|++++.+++..+..++ .|+. ...+..+.-..-|.|+..--.
T Consensus 53 g~~VLDiGCG~G~--~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh~ 130 (280)
T d2fk8a1 53 GMTLLDIGCGWGT--TMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHF 130 (280)
T ss_dssp TCEEEEESCTTSH--HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred CCEEEEecCCchH--HHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHHh
Confidence 7899999999654 33444 4569999999999877655433 3332 123444544557887654321
Q ss_pred -hhHHHHHhcccccccccCCCCCEEE
Q 022909 138 -PESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 138 -~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
......++ +++...||||..++
T Consensus 131 ~~~~~~~~f---~~i~~~LkpgG~~~ 153 (280)
T d2fk8a1 131 GHENYDDFF---KRCFNIMPADGRMT 153 (280)
T ss_dssp CGGGHHHHH---HHHHHHSCTTCEEE
T ss_pred hhhhHHHHH---HHHHhccCCCceEE
Confidence 12234444 45677899987654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.88 E-value=0.45 Score=36.92 Aligned_cols=40 Identities=13% Similarity=0.004 Sum_probs=33.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
+.+|..+|||. | ..+..|+..|++|+++|.++..++.+.+
T Consensus 46 ~~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~ 85 (229)
T d2bzga1 46 GLRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFT 85 (229)
T ss_dssp SCEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CCEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 68999999998 5 4677788899999999999987765544
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=80.79 E-value=0.49 Score=36.04 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=53.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh----CCC--c-cCCCHHHHh---hcCCeEEEEeCC---
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LGA--K-YQPSPDEVA---ASCDVTFAMLAD--- 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----~g~--~-~~~~~~~~~---~~aDivv~~~p~--- 137 (290)
+.+|.=||||. |. ++..++..|.+|++.|.+++..+.+++ .+. . ...+..++- ..-|+|+..-..
T Consensus 38 ~~~ILDiGcG~-G~-~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 38 RGKVLDLACGV-GG-FSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CCEEEEETCTT-SH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CCEEEEECCCc-ch-hhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhC
Confidence 46899999987 33 556677789999999999876655443 221 1 112222221 235777664332
Q ss_pred -hhHHHHHhcccccccccCCCCCEE-EEe
Q 022909 138 -PESAMDVACGKHGAASGMGPGKGY-VDV 164 (290)
Q Consensus 138 -~~~~~~~~~~~~~~~~~~~~~~~l-in~ 164 (290)
+.+...++ +++...|+||..+ |..
T Consensus 116 ~~~d~~~~l---~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 116 EPLELNQVF---KEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp CHHHHHHHH---HHHHHHEEEEEEEEEEE
T ss_pred ChhHHHHHH---HHHHHHcCcCcEEEEEE
Confidence 23444555 5567788998754 443
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.73 E-value=1.4 Score=36.19 Aligned_cols=110 Identities=10% Similarity=0.039 Sum_probs=62.8
Q ss_pred CCeEEEEcccH--hHHHHHHHHHHCCCeEEEEeCCccchhhHHh----C--------------CCcc-CCCH----HHHh
Q 022909 71 PGRIGFLGMGI--MGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----L--------------GAKY-QPSP----DEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~--iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----~--------------g~~~-~~~~----~~~~ 125 (290)
+++|.=+|+|. +...+|+.+... -+|+.+|.+++..+.+++ . ++.. ..+. ..+.
T Consensus 99 G~rVLE~GtGsG~lt~~LAr~vg~~-G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~ 177 (324)
T d2b25a1 99 GDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 177 (324)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCEEEEecccccHHHHHHHHHhCCC-cEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccC
Confidence 68888888754 444555555333 379999999876654432 0 0100 0111 1111
Q ss_pred -hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 126 -ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 126 -~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
...|.|++-+|.+... + +++...||||..++-.+ ........+.++|+..+..|.+
T Consensus 178 ~~~fD~V~LD~p~P~~~---l---~~~~~~LKpGG~lv~~~-P~i~Qv~~~~~~l~~~~~~f~~ 234 (324)
T d2b25a1 178 SLTFDAVALDMLNPHVT---L---PVFYPHLKHGGVCAVYV-VNITQVIELLDGIRTCELALSC 234 (324)
T ss_dssp ---EEEEEECSSSTTTT---H---HHHGGGEEEEEEEEEEE-SSHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCcceEeecCcCHHHH---H---HHHHHhccCCCEEEEEe-CCHHHHHHHHHHHHHcCCCcee
Confidence 2358999988876542 2 23467789988776442 3334455677788766655544
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=80.30 E-value=0.81 Score=37.89 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=28.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR 102 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~ 102 (290)
--+-|||.|.-|..+|.+|++.|.+|++..+
T Consensus 8 ~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa 38 (370)
T d3coxa1 8 VPALVIGSGYGGAVAALRLTQAGIPTQIVEM 38 (370)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 4599999999999999999999999999986
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.23 E-value=0.47 Score=34.49 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=24.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDV 97 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V 97 (290)
+++|.|||.|++|..+|..+...|.++
T Consensus 29 gkrVvVIGgG~~g~d~a~~~~r~G~~~ 55 (162)
T d1ps9a2 29 GNKVAIIGCGGIGFDTAMYLSQPGEST 55 (162)
T ss_dssp CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence 799999999999999999999998753
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.02 E-value=2.3 Score=34.84 Aligned_cols=90 Identities=17% Similarity=0.076 Sum_probs=55.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh-----------CCCc-----c-CC-----CHHHHhhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-----------LGAK-----Y-QP-----SPDEVAAS 127 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~-----------~g~~-----~-~~-----~~~~~~~~ 127 (290)
+.+|.=||+|. |..+.......|+ +++++|.++...+...+ .|.. . .. +..+.+.+
T Consensus 152 ~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~~ 230 (328)
T d1nw3a_ 152 DDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIAN 230 (328)
T ss_dssp TCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccCc
Confidence 57899999984 5555555556676 69999999865433221 1111 1 11 23444567
Q ss_pred CCeEEEEeC-ChhHHHHHhcccccccccCCCCCEEEEe
Q 022909 128 CDVTFAMLA-DPESAMDVACGKHGAASGMGPGKGYVDV 164 (290)
Q Consensus 128 aDivv~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lin~ 164 (290)
+|+|++..- ..++....+ .+++..||||..||..
T Consensus 231 advi~~~~~~f~~~~~~~l---~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 231 TSVIFVNNFAFGPEVDHQL---KERFANMKEGGRIVSS 265 (328)
T ss_dssp CSEEEECCTTTCHHHHHHH---HHHHTTCCTTCEEEES
T ss_pred ceEEEEcceecchHHHHHH---HHHHHhCCCCcEEEEe
Confidence 899886432 234445555 4567889999998864
|