Citrus Sinensis ID: 022915

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVSSSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEEDDYESERIRIREPLIHQQPIAHSDIWSSRIREKVSCLNLSVGQISSDSLCCKI
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHcccEccccEEcccccEccc
Coil and Loop (DISEMBL)
mqrncchiSFAFILKFLNFLQGFIGVSIILYSIWMLdqwnhhvpvpplpplaptpdtsvsssslslflnsdttqsrvlshdhrrlttstgpldvmvsgfddvsglgfdfnsfelpapwfiySFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDrrwekdlpfdptgeldslrsFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVStrrtnfdeeddyeseririreplihqqpiahsdiwsSRIREKVSCLnlsvgqissdslccki
Flexible Loop (DISEMBL)
MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVSSSSLSLFLNSDTtqsrvlshdhrrlttstgpldvMVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAmvstrrtnfdeeddyeseririreplihqqpiahsdiwsSRIREKVSCLnlsvgqissdslccki
Low Complexity Region (SEG)
MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHvpvpplpplaptpDTsvsssslslflnsDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITvvivqalslllaiilraMVSTRRTNFDEEDDYESERIRIREPLIHQQPIAHSDIWSSRIREKVSCLNLSVGQISSDSLCCKI
Disordered region (IsUnstruct)
***NCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPV********************************************GPLDVMVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNF*********RIRIREPLIHQQPIAHSDIWSSRIREKVSCLNLSVGQIS********
Disordered Region (DISOPRED)
****CCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHV**************************************HRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEEDDYESE************************REKVSCLNLSVGQISSDSLCCKI
Disordered Region (DISEMBL)
MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAP***********SLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTN********SERIRIREPLIHQQPIAHSDIWSSRIREKVSCLNLSVGQISSDSLCCKI
Disordered Region (DISPRO)
**RNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVP***********************************HDHRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTR*****EEDDYESERIRIREP********HSDIWSSRIREKVSCLNLSVGQISSDSLCCKI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVSSSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEEDDYESERIRIREPLIHQQPIAHSDIWSSRIREKVSCLNLSVGQISSDSLCCKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
Q93XY5	270	Tetraspanin-18 OS=Arabido	yes	no	0.858	0.922	0.564	9e-71
Q9SVU4	281	Tetraspanin-20 OS=Arabido	no	no	0.910	0.939	0.566	9e-66
Q940P5	221	Tetraspanin-19 OS=Arabido	no	no	0.555	0.728	0.366	2e-30

>sp|Q93XY5|TET18_ARATH Tetraspanin-18 OS=Arabidopsis thaliana GN=At2g20230 PE=2 SV=1

 Score =  266 bits (681), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 157/278 (56%), Positives = 192/278 (69%), Gaps = 29/278 (10%)

Query: 1   MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVS 60
           M+RNCCH+SFA  LK LNF+Q FIGVSII+YSIWML +++ H+PV P P  + +  T ++
Sbjct: 1   MRRNCCHVSFASTLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIA 60

Query: 61  SSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSG--LGFDFNSFELPAPW 118
           +S      N                     P+D + S     +G   GF+  S +LPAPW
Sbjct: 61  TSVSEPLKN---------------------PIDFVASIILGSNGGDHGFNLRSLDLPAPW 99

Query: 119 FIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEK 178
           FIYSFM VGILVC +  IG IAAEAI+GCCLCFY+ILK +L LLEAALVA+IAIDR WEK
Sbjct: 100 FIYSFMAVGILVCIVTFIGFIAAEAINGCCLCFYSILKTLLILLEAALVAYIAIDRHWEK 159

Query: 179 DLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEED 238
           DLP+DPTGEL SLR+FIE+N+DICKWVGI VV VQ LSLLLA++LRAMVST +   DEE+
Sbjct: 160 DLPYDPTGELSSLRAFIEENIDICKWVGIAVVAVQLLSLLLAMVLRAMVSTPKPELDEEE 219

Query: 239 DYESERIRIREPLI----HQQPIAHSDI--WSSRIREK 270
           D E+ R R  +PL+    +Q P   S I  WSSRIREK
Sbjct: 220 DDENPRSRTWDPLLGPQGNQAPAGSSKIENWSSRIREK 257

May be involved in the regulation of cell differentiation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVU4|TET20_ARATH Tetraspanin-20 OS=Arabidopsis thaliana GN=At4g28770 PE=2 SV=1

 Score =  250 bits (638), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 161/284 (56%), Positives = 197/284 (69%), Gaps = 20/284 (7%)

Query: 1   MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVS 60
           M+ NCCH+SFA ILK LNFLQ FIG+SII+YSIWMLDQ+NHHVPV P P   P   +  S
Sbjct: 1   MRHNCCHVSFASILKILNFLQAFIGISIIIYSIWMLDQYNHHVPVDPPPSQPPAASSPDS 60

Query: 61  SSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSG---LGFDFNSFELPAP 117
           S S S  +    + S  L +          P+D  VSG    SG    GF+  S +LPAP
Sbjct: 61  SYSFSNSIIEINSVSDSLKN----------PID-FVSGIVLGSGGGDSGFNLRSLDLPAP 109

Query: 118 WFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWE 177
           WFIY FM +GILVC + +IG IAAEAI+GCCLCFY+ILK +L ++EAALV FI IDR WE
Sbjct: 110 WFIYCFMAIGILVCIVTIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHWE 169

Query: 178 KDLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEE 237
           KDLP+DPTGEL+SLR+FIE+N+DICKWVGI VV +Q LSLLLA++LRAMVS R++  D+E
Sbjct: 170 KDLPYDPTGELNSLRAFIEENIDICKWVGIVVVAIQLLSLLLALVLRAMVSPRQSELDDE 229

Query: 238 DDYESERIRIREPLIHQQPIAHS------DIWSSRIREKVSCLN 275
           DD+E+   R R+ L+  Q    S      D W SRIREK   +N
Sbjct: 230 DDFENPMSRARDNLLGPQANQTSSGSSNIDNWRSRIREKYGLIN 273

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940P5|TET19_ARATH Tetraspanin-19 OS=Arabidopsis thaliana GN=At2g20740 PE=2 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 100/169 (59%), Gaps = 8/169 (4%)

Query: 109 FNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVA 168
           F   + P PWFIYSF+G+G ++C +   G IAAE ++GCCL  Y    ++L ++E  +VA
Sbjct: 47  FADSDHPVPWFIYSFLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVA 106

Query: 169 FIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVS 228
            I ++R W+KD P DP+G       FIE N  ICKW+G+++V VQ LS+L+A++L+A+  
Sbjct: 107 DIFLNRDWKKDFPEDPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLKALGP 166

Query: 229 TRRTNFDEEDDYESERI------RIREPLIHQQPI--AHSDIWSSRIRE 269
               ++D +D+Y    +      R   P +  +P+  A    W+ R+ +
Sbjct: 167 HPHRHYDSDDEYNVSTVALLQDARQPPPYVVGEPMYGAKPGAWTVRLMK 215

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
118483316	281	unknown [Populus trichocarpa]	0.872	0.900	0.632	5e-81
224065502	281	predicted protein [Populus trichocarpa]	0.872	0.900	0.632	5e-81
297836220	270	hypothetical protein ARALYDRAFT_480447 [	0.858	0.922	0.564	1e-76
297744265	274	unnamed protein product [Vitis vinifera]	0.865	0.916	0.575	7e-74
388519487	249	unknown [Medicago truncatula]	0.789	0.919	0.522	5e-72
217073278	249	unknown [Medicago truncatula]	0.789	0.919	0.522	1e-71
255560279	225	conserved hypothetical protein [Ricinus	0.734	0.946	0.628	3e-70
449517824	280	PREDICTED: uncharacterized LOC101206480	0.906	0.939	0.572	3e-70
449468604	280	PREDICTED: uncharacterized protein LOC10	0.906	0.939	0.569	6e-70
18399283	270	Tetraspanin family protein [Arabidopsis	0.858	0.922	0.564	5e-69

>gi|118483316|gb|ABK93560.1| unknown [Populus trichocarpa]

 Score =  306 bits (785), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 174/275 (63%), Positives = 205/275 (74%), Gaps = 22/275 (8%)

Query: 1   MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVS 60
           M+RNCCH+  AF+LK LNFLQ FIG+SII+YS WMLDQWN+ VPV P    +P    S S
Sbjct: 1   MERNCCHVPLAFVLKLLNFLQAFIGISIIIYSFWMLDQWNNKVPVFPPSAPSPDSSFSSS 60

Query: 61  SSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFI 120
           S  L     S + +  V S               +V  F++  GL FD NSF+LPAPWFI
Sbjct: 61  SLLLLPGSESHSIRDLVFSD--------------VVPRFEN--GLDFDLNSFQLPAPWFI 104

Query: 121 YSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDL 180
           YSFMGVG+++CCI  IGCIAAE+I+GCCLCFY ILKI+  LLEAALVAFIAIDRRWEKDL
Sbjct: 105 YSFMGVGVILCCITFIGCIAAESINGCCLCFYTILKIVFILLEAALVAFIAIDRRWEKDL 164

Query: 181 PFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEEDDY 240
           PFDPTGEL SLR F+E+NVDICKWVGITV+I+QAL+LLLA+ILRAMVSTRR  FD EDD+
Sbjct: 165 PFDPTGELQSLRIFVEENVDICKWVGITVLIIQALALLLAMILRAMVSTRRNEFD-EDDF 223

Query: 241 ESERIRIREPLIHQ-----QPIAHSDIWSSRIREK 270
           E+ R R REPL++Q      P  HSDIW+SR+REK
Sbjct: 224 ENVRGRTREPLLNQSGQTFSPGTHSDIWTSRMREK 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065502|ref|XP_002301831.1| predicted protein [Populus trichocarpa] gi|118482993|gb|ABK93408.1| unknown [Populus trichocarpa] gi|222843557|gb|EEE81104.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (785), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 174/275 (63%), Positives = 205/275 (74%), Gaps = 22/275 (8%)

Query: 1   MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVS 60
           M+RNCCH+  AF+LK LNFLQ FIG+SII+YS WMLDQWN+ VPV P    +P    S S
Sbjct: 1   MERNCCHVPLAFVLKLLNFLQAFIGISIIIYSFWMLDQWNNKVPVFPPSAPSPDSSFSSS 60

Query: 61  SSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFI 120
           S  L     S + +  V S               +V  F++  GL FD NSF+LPAPWFI
Sbjct: 61  SLLLLPGSESHSIRDLVFSD--------------VVPRFEN--GLDFDLNSFQLPAPWFI 104

Query: 121 YSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDL 180
           YSFMGVG+++CCI  IGCIAAE+I+GCCLCFY ILKI+  LLEAALVAFIAIDRRWEKDL
Sbjct: 105 YSFMGVGVILCCITFIGCIAAESINGCCLCFYTILKIVFILLEAALVAFIAIDRRWEKDL 164

Query: 181 PFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEEDDY 240
           PFDPTGEL SLR F+E+NVDICKWVGITV+I+QAL+LLLA+ILRAMVSTRR  FD EDD+
Sbjct: 165 PFDPTGELQSLRIFVEENVDICKWVGITVLIIQALALLLAMILRAMVSTRRNEFD-EDDF 223

Query: 241 ESERIRIREPLIHQ-----QPIAHSDIWSSRIREK 270
           E+ R R REPL++Q      P  HSDIW+SR+REK
Sbjct: 224 ENVRGRTREPLLNQSGQTFSPGTHSDIWTSRMREK 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836220|ref|XP_002885992.1| hypothetical protein ARALYDRAFT_480447 [Arabidopsis lyrata subsp. lyrata] gi|297331832|gb|EFH62251.1| hypothetical protein ARALYDRAFT_480447 [Arabidopsis lyrata subsp. lyrata]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/278 (56%), Positives = 192/278 (69%), Gaps = 29/278 (10%)

Query: 1   MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVS 60
           M+RNCCH+SFA  LK LN +Q FIGVSII+YSIWML ++N H+PV P P  + +  T ++
Sbjct: 1   MRRNCCHVSFASTLKILNCVQAFIGVSIIIYSIWMLHEYNRHLPVDPPPAASSSSGTEIA 60

Query: 61  SSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSG--LGFDFNSFELPAPW 118
           +S      N                     P++ M S     +G   GF+  S +LPAPW
Sbjct: 61  TSISEPLKN---------------------PIEFMASIVLGSNGGDHGFNLRSLDLPAPW 99

Query: 119 FIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEK 178
           FIYSFM VGILVC +  IG IAAEAI+GCCLCFY+ILK +L LLEAALVA+IAIDR WEK
Sbjct: 100 FIYSFMAVGILVCIVTFIGFIAAEAINGCCLCFYSILKTLLILLEAALVAYIAIDRHWEK 159

Query: 179 DLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEED 238
           DLP+DPTGEL SLR+FIE+N+DICKWVGI VV VQ LSLLLA++LRAMVST +   DEE+
Sbjct: 160 DLPYDPTGELSSLRAFIEENIDICKWVGIAVVAVQLLSLLLAMVLRAMVSTPKPELDEEE 219

Query: 239 DYESERIRIREPLI----HQQPIAHSDI--WSSRIREK 270
           DYE+ R R  +PL+    +Q P   S I  WSSRIRE+
Sbjct: 220 DYENPRSRTWDPLLGSQGNQAPAGSSKIENWSSRIRER 257

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744265|emb|CBI37235.3| unnamed protein product [Vitis vinifera]

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 161/280 (57%), Positives = 192/280 (68%), Gaps = 29/280 (10%)

Query: 3   RNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVSSS 62
           RN CH S AF+LK LNFLQ FIG+SII YS+WML+QWNH +         P+P      S
Sbjct: 2   RNRCHSSLAFLLKVLNFLQTFIGISIIFYSLWMLNQWNHQI-------PVPSPPAPSPDS 54

Query: 63  SLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFIYS 122
           S   FL SDT  +RV          +      MVSG DD +GL   F   +LPAPWFIYS
Sbjct: 55  SQFPFLMSDT--ARVPEDKINPFAFAAD----MVSGSDD-NGLVLQF--IKLPAPWFIYS 105

Query: 123 FMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDLPF 182
           FMGVGI+VCCI  IG IAAEAI+GCCLCFY +L ++L LLEA L+AF+A D  WEKDLPF
Sbjct: 106 FMGVGIVVCCITCIGHIAAEAINGCCLCFYTMLTVLLILLEAGLIAFVAFDHHWEKDLPF 165

Query: 183 DPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEEDDYES 242
           DPTGEL++ RSFIE N+DICKWVGITVV +QALSLLLA+ILRAMVSTR+T++D EDDY +
Sbjct: 166 DPTGELENFRSFIEGNIDICKWVGITVVSIQALSLLLAMILRAMVSTRKTDYDIEDDYTA 225

Query: 243 ERIRIREPLIHQQPI------------AHSDIWSSRIREK 270
              R REPL++ Q              A+ + WSSR+REK
Sbjct: 226 AG-RNREPLLNPQASQTSGSSKGDGKGAYLETWSSRMREK 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519487|gb|AFK47805.1| unknown [Medicago truncatula]

 Score =  277 bits (708), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 150/287 (52%), Positives = 184/287 (64%), Gaps = 58/287 (20%)

Query: 1   MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVS 60
           M+ +CCH S AF+LKFLNFLQ F+G+SI+LYSIWML+QW+H  P PPLP L+ +   S S
Sbjct: 1   MRLHCCHFSLAFLLKFLNFLQAFVGLSILLYSIWMLNQWDHFTPQPPLPHLSLSLPRSFS 60

Query: 61  SSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFI 120
               S                                          D N   LPAPWFI
Sbjct: 61  PQFTS------------------------------------------DIN---LPAPWFI 75

Query: 121 YSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDL 180
           Y+FM VGILVCCIA  GCIAAE I+GCCLCFY +L  +L LLEAALVAFIAIDR+W++DL
Sbjct: 76  YAFMCVGILVCCIAFFGCIAAEIINGCCLCFYTVLITVLVLLEAALVAFIAIDRQWQEDL 135

Query: 181 PFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEEDDY 240
           P DPTG+L S+RSFIED+ DI +WVGI V++VQALSLL+A+ILRA VSTRR +FD+E++Y
Sbjct: 136 PVDPTGQLASIRSFIEDDQDISRWVGIAVLVVQALSLLVALILRATVSTRRADFDDEEEY 195

Query: 241 ESERIRIREPLIHQQPIAH------------SDIWSSRIREKVSCLN 275
           +  R R REPL++ Q                SD+WSSR+REK    N
Sbjct: 196 DV-RGRSREPLLNHQSGQTSGISKGDIRGNLSDVWSSRMREKYGLNN 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073278|gb|ACJ84998.1| unknown [Medicago truncatula]

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 150/287 (52%), Positives = 183/287 (63%), Gaps = 58/287 (20%)

Query: 1   MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVS 60
           M+ +CC  S AF+LKFLNFLQ F+G+SI+LYSIWML+QW+H  P PPLP L+ +   S S
Sbjct: 1   MRLHCCRFSLAFLLKFLNFLQAFVGLSILLYSIWMLNQWDHFTPQPPLPHLSLSLPRSFS 60

Query: 61  SSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFI 120
               S                                          D N   LPAPWFI
Sbjct: 61  PQFTS------------------------------------------DIN---LPAPWFI 75

Query: 121 YSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDL 180
           Y+FM VGILVCCIA  GCIAAE I+GCCLCFY +L  +L LLEAALVAFIAIDR+W++DL
Sbjct: 76  YAFMCVGILVCCIAFFGCIAAEIINGCCLCFYTVLITVLVLLEAALVAFIAIDRQWQEDL 135

Query: 181 PFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEEDDY 240
           P DPTG+L S+RSFIEDN DI +WVGI V++VQALSLL+A+ILRA VSTRR +FD+E++Y
Sbjct: 136 PVDPTGQLASIRSFIEDNQDISRWVGIAVLVVQALSLLVALILRATVSTRRADFDDEEEY 195

Query: 241 ESERIRIREPLIHQQPIAH------------SDIWSSRIREKVSCLN 275
           +  R R REPL++ Q                SD+WSSR+REK    N
Sbjct: 196 DV-RGRSREPLLNHQSGQTSGISKGDIRGNLSDVWSSRMREKYGLNN 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560279|ref|XP_002521157.1| conserved hypothetical protein [Ricinus communis] gi|223539726|gb|EEF41308.1| conserved hypothetical protein [Ricinus communis]

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 152/242 (62%), Positives = 183/242 (75%), Gaps = 29/242 (11%)

Query: 35  MLDQWNHHVPVPPLPPLAPTPDTSVSSSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDV 94
           ML+QWNH VP+PP P LAP+PD+   S SL++          V++    R          
Sbjct: 1   MLNQWNHRVPLPPSPILAPSPDSYSQSHSLTVL--------NVVADVAFR---------- 42

Query: 95  MVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAI 154
               FDD  GLG D NSF+LPAPWFIYSFMGVGI++CCI LIGCIAAEAI+GCCLCFY+I
Sbjct: 43  ----FDD--GLGLDLNSFKLPAPWFIYSFMGVGIILCCITLIGCIAAEAINGCCLCFYSI 96

Query: 155 LKIILFLLEAALVAFIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQA 214
           LK +L LLEA+LVAFIAIDRRWEKDLPFDPTGEL SLRSF+E+NVDIC+W+GITV+++QA
Sbjct: 97  LKTVLILLEASLVAFIAIDRRWEKDLPFDPTGELQSLRSFVEENVDICEWIGITVIVIQA 156

Query: 215 LSLLLAIILRAMVSTRRTNFDEEDDYESERIRIREPLIHQQPIA-----HSDIWSSRIRE 269
           LSLLLAIILRA++ST R++ + EDDYES R R  EPL++Q         HSDIWSSR+RE
Sbjct: 157 LSLLLAIILRALISTGRSDSEFEDDYESGRRRTWEPLLNQSGQTSGSGVHSDIWSSRMRE 216

Query: 270 KV 271
           K+
Sbjct: 217 KL 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517824|ref|XP_004165944.1| PREDICTED: uncharacterized LOC101206480 [Cucumis sativus]

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 161/281 (57%), Positives = 198/281 (70%), Gaps = 18/281 (6%)

Query: 1   MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVS 60
           M R CCH+S AFILK  NFLQ F+GVSII+YS WMLD+WNHHVPV P PP+      S +
Sbjct: 1   MARTCCHVSLAFILKCFNFLQAFVGVSIIVYSAWMLDRWNHHVPVSPPPPVPALA-PSPA 59

Query: 61  SSSLSLFLNSD--TTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPW 118
           +SS+S +LNS+  T   R+ + D   L     P       FD    L  + N+F+LPAPW
Sbjct: 60  ASSVSFYLNSESVTVADRITAMD---LAADFIP------EFDR-EELKLELNAFKLPAPW 109

Query: 119 FIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEK 178
           FIYSFMG G+L+CCI L+GCIAAEAISGCCLCFY +L ++  L+E  LVAFIAIDR WEK
Sbjct: 110 FIYSFMGFGVLLCCITLVGCIAAEAISGCCLCFYNMLIMLFILVEVGLVAFIAIDRSWEK 169

Query: 179 DLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEED 238
           DLP DPTGELD LR FIEDN+++ KW+GI V+  QALSLLLAIILR+MVSTR+T +D E+
Sbjct: 170 DLPLDPTGELDELRHFIEDNINLSKWIGIVVISTQALSLLLAIILRSMVSTRKTEYDTEE 229

Query: 239 DYESERIRIREPLI----HQQPIAHSDIWSSRIREKVSCLN 275
           +    R R REPL+    +Q   AH D+W +R+REK    N
Sbjct: 230 EV-GVRDRTREPLLNPPANQAAGAHFDLWGARMREKYGLNN 269

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468604|ref|XP_004152011.1| PREDICTED: uncharacterized protein LOC101206480 [Cucumis sativus]

 Score =  270 bits (689), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 160/281 (56%), Positives = 198/281 (70%), Gaps = 18/281 (6%)

Query: 1   MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVS 60
           M R CCH+S AFILK  NFLQ F+GVSII+YS WMLD+WNHHVPV P PP+      S +
Sbjct: 1   MARTCCHVSLAFILKCFNFLQAFVGVSIIVYSAWMLDRWNHHVPVSPPPPVPALA-PSPA 59

Query: 61  SSSLSLFLNSD--TTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPW 118
           +SS+S +LNS+  T   R+ + D   L     P       FD    L  + N+F+LPAPW
Sbjct: 60  ASSVSFYLNSESVTVADRITAMD---LAADFIP------EFDR-EELKLELNAFKLPAPW 109

Query: 119 FIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEK 178
           FIYSFMG G+L+CCI L+GCIAAEAISGCCLCFY +L ++  ++E  LVAFIAIDR WEK
Sbjct: 110 FIYSFMGFGVLLCCITLVGCIAAEAISGCCLCFYNMLIMLFIIVEVGLVAFIAIDRSWEK 169

Query: 179 DLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEED 238
           DLP DPTGELD LR FIEDN+++ KW+GI V+  QALSLLLAIILR+MVSTR+T +D E+
Sbjct: 170 DLPLDPTGELDELRHFIEDNINLSKWIGIVVISTQALSLLLAIILRSMVSTRKTEYDTEE 229

Query: 239 DYESERIRIREPLI----HQQPIAHSDIWSSRIREKVSCLN 275
           +    R R REPL+    +Q   AH D+W +R+REK    N
Sbjct: 230 EV-GVRDRTREPLLNPPANQAAGAHFDLWGARMREKYGLNN 269

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399283|ref|NP_565468.1| Tetraspanin family protein [Arabidopsis thaliana] gi|75249394|sp|Q93XY5.1|TET18_ARATH RecName: Full=Tetraspanin-18 gi|15450980|gb|AAK96761.1| Unknown protein [Arabidopsis thaliana] gi|20197855|gb|AAD21765.2| expressed protein [Arabidopsis thaliana] gi|21594467|gb|AAM66011.1| unknown [Arabidopsis thaliana] gi|330251889|gb|AEC06983.1| Tetraspanin family protein [Arabidopsis thaliana]

 Score =  266 bits (681), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 157/278 (56%), Positives = 192/278 (69%), Gaps = 29/278 (10%)

Query: 1   MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVS 60
           M+RNCCH+SFA  LK LNF+Q FIGVSII+YSIWML +++ H+PV P P  + +  T ++
Sbjct: 1   MRRNCCHVSFASTLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIA 60

Query: 61  SSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSG--LGFDFNSFELPAPW 118
           +S      N                     P+D + S     +G   GF+  S +LPAPW
Sbjct: 61  TSVSEPLKN---------------------PIDFVASIILGSNGGDHGFNLRSLDLPAPW 99

Query: 119 FIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEK 178
           FIYSFM VGILVC +  IG IAAEAI+GCCLCFY+ILK +L LLEAALVA+IAIDR WEK
Sbjct: 100 FIYSFMAVGILVCIVTFIGFIAAEAINGCCLCFYSILKTLLILLEAALVAYIAIDRHWEK 159

Query: 179 DLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEED 238
           DLP+DPTGEL SLR+FIE+N+DICKWVGI VV VQ LSLLLA++LRAMVST +   DEE+
Sbjct: 160 DLPYDPTGELSSLRAFIEENIDICKWVGIAVVAVQLLSLLLAMVLRAMVSTPKPELDEEE 219

Query: 239 DYESERIRIREPLI----HQQPIAHSDI--WSSRIREK 270
           D E+ R R  +PL+    +Q P   S I  WSSRIREK
Sbjct: 220 DDENPRSRTWDPLLGPQGNQAPAGSSKIENWSSRIREK 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
TAIR|locus:2038997	270	AT2G20230 [Arabidopsis thalian	0.641	0.688	0.569	8.7e-67
TAIR|locus:2051348	221	AT2G20740 "AT2G20740" [Arabido	0.548	0.719	0.311	1.6e-30
TAIR|locus:2033718	280	TOM2A "tobamovirus multiplicat	0.541	0.560	0.346	7.4e-27

TAIR|locus:2038997 AT2G20230 [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
 Identities = 111/195 (56%), Positives = 131/195 (67%)

Query:    91 PLDVMVSGFDDVSG--LGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCC 148
             P+D + S     +G   GF+  S +LPAPWFIYSFM VGILVC +  IG IAAEAI+GCC
Sbjct:    70 PIDFVASIILGSNGGDHGFNLRSLDLPAPWFIYSFMAVGILVCIVTFIGFIAAEAINGCC 129

Query:   149 LCFYAILKIILFLLEAALVAFIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGIT 208
             LCFY+ILK +L LLEAALVA+IAIDR WEKDLP+DPTGEL SLR+FIE+N+DICKWVGI 
Sbjct:   130 LCFYSILKTLLILLEAALVAYIAIDRHWEKDLPYDPTGELSSLRAFIEENIDICKWVGIA 189

Query:   209 XXXXXXXXXXXXXXXXXMVSTRRTNFDEEDDYESERIRIREPLI----HQQPIAHSDI-- 262
                              MVST +   DEE+D E+ R R  +PL+    +Q P   S I  
Sbjct:   190 VVAVQLLSLLLAMVLRAMVSTPKPELDEEEDDENPRSRTWDPLLGPQGNQAPAGSSKIEN 249

Query:   263 WSSRIREKVSCLNLS 277
             WSSRIREK   LN S
Sbjct:   250 WSSRIREKYG-LNQS 263

GO:0016021 "integral to membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2051348 AT2G20740 "AT2G20740" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
 Identities = 52/167 (31%), Positives = 85/167 (50%)

Query:   109 FNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVA 168
             F   + P PWFIYSF+G+G ++C +   G IAAE ++GCCL  Y    ++L ++E  +VA
Sbjct:    47 FADSDHPVPWFIYSFLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVA 106

Query:   169 FIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITXXXXXXXXXXXXXXXXXMVS 228
              I ++R W+KD P DP+G       FIE N  ICKW+G++                 +  
Sbjct:   107 DIFLNRDWKKDFPEDPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLKALGP 166

Query:   229 TRRTNFDEEDDYESERIRIRE------PLIHQQPI--AHSDIWSSRI 267
                 ++D +D+Y    + + +      P +  +P+  A    W+ R+
Sbjct:   167 HPHRHYDSDDEYNVSTVALLQDARQPPPYVVGEPMYGAKPGAWTVRL 213

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2033718 TOM2A "tobamovirus multiplication 2A" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
 Identities = 62/179 (34%), Positives = 93/179 (51%)

Query:   110 NSFE-LPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVA 168
             N F+ LP  WFIY F+G+G+ +  I+  GC+   + S CCL  Y++L I+L L+E    A
Sbjct:    71 NIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAA 130

Query:   169 FIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITXXXXXXXXXXXXXXXXXMVS 228
             FI  D  W  +LP D TG  D++ +F+ +N  I +WV +                  MV 
Sbjct:   131 FIFFDNSWRDELPSDRTGNFDTIYNFLRENWKIVRWVAL----GAVVFEALLFLLALMVR 186

Query:   229 TRRT--NFDEEDDYESERIRIREPLIHQQ-------PIA--------HSDIWSSRIREK 270
                T   +D +D+Y + R +IR+P I++Q       P+A         SD WS+R+REK
Sbjct:   187 AANTPAEYDSDDEYLAPRQQIRQPFINRQAAPVTGVPVAPTLDQRPSRSDPWSARMREK 245

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=ISS

GO:0046786 "viral replication complex formation and maintenance" evidence=IMP

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93XY5	TET18_ARATH	No assigned EC number	0.5647	0.8586	0.9222	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	290
pfam00335	221	pfam00335, Tetraspannin, Tetraspanin family	1e-04

>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 117 PWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDR 174
                  + +G+++  +  +GC  A   S C L  Y IL +ILF+LE A      + R
Sbjct: 44  RALYILIIVLGVIILLVGFLGCCGAIKESRCLLLTYFILLLILFILEIAAGILAFVYR 101

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
KOG3882	237	consensus Tetraspanin family integral membrane pro	99.91
PF00335	221	Tetraspannin: Tetraspanin family RDS_ROM1 subfamil	99.6
KOG4433	526	consensus Tweety transmembrane/cell surface protei	93.96
cd03164	86	CD53_like_LEL Tetraspanin, extracellular domain or	89.35
PF04906	406	Tweety: Tweety; InterPro: IPR006990 None of the me	88.96

>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]

Probab=99.91  E-value=1.1e-23  Score=190.38  Aligned_cols=164  Identities=25%  Similarity=0.428  Sum_probs=134.5

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCCCCCCCCCCCCCCCccccccccccccccccccccc
Q 022915            2 QRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVSSSSLSLFLNSDTTQSRVLSHD   81 (290)
Q Consensus         2 ~~~~C~~~lk~lL~~lN~l~~l~Gl~lI~~Giwml~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   81 (290)
                      ..++|..|+|++++++|+++|++|++++++|+|++.+......                                     
T Consensus         1 ~~~~~~~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~-------------------------------------   43 (237)
T KOG3882|consen    1 MMSCGSSCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSS-------------------------------------   43 (237)
T ss_pred             CCCcccchHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhh-------------------------------------
Confidence            0678999999999999999999999999999999877654111                                     


Q ss_pred             cccccccCCCCcccccccccCCCCCcccCCCCCCcchhhhHHHhhhhHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHH
Q 022915           82 HRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFL  161 (290)
Q Consensus        82 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~fIY~~i~vG~il~iis~~GciGA~~~n~c~L~~Y~vll~lLil  161 (290)
                      +.     +                   . . .+..+|   +++++|+++++++++||+||.+||+|+|.+|+++++++++
T Consensus        44 ~~-----~-------------------~-~-~~~~~~---ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~l~l~~i   94 (237)
T KOG3882|consen   44 LL-----E-------------------S-D-FLVPAY---ILIAVGGVVFLVGFLGCCGALRESRCLLLSYFILLLLLFI   94 (237)
T ss_pred             cc-----c-------------------c-c-hhcchh---hhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHHHHHHHHH
Confidence            00     0                   0 0 022333   8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc--------------------------------------------C-CCcCcC----CC-----------
Q 022915          162 LEAALVAFIAI--------------------------------------------D-RRWEKD----LP-----------  181 (290)
Q Consensus       162 lEla~~~~i~~--------------------------------------------d-~dW~~~----vP-----------  181 (290)
                      +|++++++.+.                                            + .||.+.    +|           
T Consensus        95 ~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~d~~Q~~~~CCG~~~~~~~~~~~~~~vP~SCC~~~~~~~  174 (237)
T KOG3882|consen   95 AELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDPDLGEAWDKLQRELKCCGVNGYSDYFNCSSNNVPPSCCKRTRRQK  174 (237)
T ss_pred             HHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhccCCcCCCchHHhcCCCCCCCcccCCCccccc
Confidence            99999965542                                            0 123211    56           


Q ss_pred             --------CCCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 022915          182 --------FDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRR  231 (290)
Q Consensus       182 --------~~~tGC~~~l~~fl~~n~~i~~~v~l~v~ilqil~illA~~L~a~~~~~~  231 (290)
                              .+.+||.+++++|+++|+.++++++++++++|++++++|+.|...+++++
T Consensus       175 ~~~~~~~~~~~~GC~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~a~~l~~~i~~~~  232 (237)
T KOG3882|consen  175 FPQDVPDNIYTEGCLEKLSSWLESNLLIIGGVGLGIAVLELLGMILACCLANAIRNQR  232 (237)
T ss_pred             ccccchhhhhccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                    36789999999999999999999999999999999999999997765433

>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []

Probab=99.60  E-value=8.7e-17  Score=138.45  Aligned_cols=151  Identities=28%  Similarity=0.468  Sum_probs=15.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCCCCCCCCCCCCCCCcccccccccccccccccccccccccccc
Q 022915            9 SFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVSSSSLSLFLNSDTTQSRVLSHDHRRLTTS   88 (290)
Q Consensus         9 ~lk~lL~~lN~l~~l~Gl~lI~~Giwml~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~~~   88 (290)
                      |+|+++.++|+++++.|++++++|+|++..... ..   .                                ..      
T Consensus         1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~-~~---~--------------------------------~~------   38 (221)
T PF00335_consen    1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQY-LS---E--------------------------------FS------   38 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cc---c--------------------------------cc------
Confidence            589999999999999999999999999421111 10   0                                00      


Q ss_pred             CCCCcccccccccCCCCCcccCCCCCCcchhhhHHHhhhhHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHHHHHHHH
Q 022915           89 TGPLDVMVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVA  168 (290)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~fIY~~i~vG~il~iis~~GciGA~~~n~c~L~~Y~vll~lLillEla~~~  168 (290)
                                           ......   ..++++.+|+++++++++|++|+.++|+|+|..|.+++++++++|++++.
T Consensus        39 ---------------------~~~~~~---~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~~~~~~~v~~~~~~i   94 (221)
T PF00335_consen   39 ---------------------SSFISY---VIIILIFIGIFILIISFLGCIGACRKNRCLLIIYIILLILLFVLELVVGI   94 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------ccchhH---HHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccchhhHHHHHHHHHH
Confidence                                 000011   12366779999999999999999999999999999999999999998884


Q ss_pred             Hhhc--C-------------------------------------------CCcCcC-----------------------C
Q 022915          169 FIAI--D-------------------------------------------RRWEKD-----------------------L  180 (290)
Q Consensus       169 ~i~~--d-------------------------------------------~dW~~~-----------------------v  180 (290)
                      +.+.  +                                           +||.+.                       -
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iq~~~~CCG~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (221)
T PF00335_consen   95 VAFSYRDQLNSSLKDGLSLRCMKSYNSNESFSEAWDNIQEKFECCGVNSPDDWFTSKWSSCSSPDSCPDCQCPDDCSSEN  174 (221)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHSSTT-CHHHHHHHHHHHHHT--SSTTCHHHHHHHHHT---------TCS-TTCCCCH
T ss_pred             hhhhccccccccccccccchhhhccccccchhhheecccccccccCCCCCcccccccccccccccccccccccccccccc
Confidence            4322  0                                           112100                       0


Q ss_pred             CCCCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022915          181 PFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRA  225 (290)
Q Consensus       181 P~~~tGC~~~l~~fl~~n~~i~~~v~l~v~ilqil~illA~~L~a  225 (290)
                      +.+.+||.+++.++++++.....+++++++++|++++++|++|+.
T Consensus       175 ~~~~~gC~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~l~~  219 (221)
T PF00335_consen  175 SIYTRGCYDKLREYLRSYLKYIGIVSLAILVLQLIGIILACCLCR  219 (221)
T ss_dssp             CCTST-HHHHHHHHHCT----------------------------
T ss_pred             cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            157889999999999999999999999999999999999999864

CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.

>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]

Probab=93.96  E-value=0.66  Score=46.93  Aligned_cols=38  Identities=13%  Similarity=0.300  Sum_probs=29.9

Q ss_pred             hhhhHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHH
Q 022915          125 GVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLL  162 (290)
Q Consensus       125 ~vG~il~iis~~GciGA~~~n~c~L~~Y~vll~lLill  162 (290)
                      ..=.+.+++.+++++|-+|+|||.|..|++.=++.+++
T Consensus       215 ~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvi  252 (526)
T KOG4433|consen  215 LLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVI  252 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence            34467788888999999999999999998765555443

>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family

Probab=89.35  E-value=0.25  Score=37.47  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.2

Q ss_pred             CCCCCCHHHHHHHHHhhchhHH
Q 022915          182 FDPTGELDSLRSFIEDNVDICK  203 (290)
Q Consensus       182 ~~~tGC~~~l~~fl~~n~~i~~  203 (290)
                      .+++||.+++.+|+++|+.+++
T Consensus        65 ~~~~GC~~~~~~~~~~~~~iig   86 (86)
T cd03164          65 YKVEGCYKKLKNWFESNFLYTG   86 (86)
T ss_pred             cccccHHHHHHHHHHHHHHHhC
Confidence            4788999999999999988753

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.

>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised

Probab=88.96  E-value=1.2  Score=44.31  Aligned_cols=31  Identities=29%  Similarity=0.554  Sum_probs=23.8

Q ss_pred             hHHHHHHHHhHHHHhhccchhhHHHHHHHHH
Q 022915          128 ILVCCIALIGCIAAEAISGCCLCFYAILKII  158 (290)
Q Consensus       128 ~il~iis~~GciGA~~~n~c~L~~Y~vll~l  158 (290)
                      ++.+++.+++++|..|++||.+..++++-++
T Consensus       194 ~l~l~icl~~l~glar~Sk~~li~~~v~gll  224 (406)
T PF04906_consen  194 ILDLVICLLGLLGLARQSKCLLIVFSVLGLL  224 (406)
T ss_pred             HHHHHHHHHHHHHHHhcCcceEEEeeeccHH
Confidence            4667788888999999999998766554433

However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00