Citrus Sinensis ID: 022955

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MTDQSTLWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRFTSANRNPQQTLARAPSLLDRVKSIDFSLYRFPTQPEQQKELHYFHQPTEEPPTYPVEPAPEQTHQLVRAPSLLDRVKSINFSLYKFPSYPAQEPEPEPEPYSYANPVEPEPGRLDRAPSLLERVKSIRLPSVYRSQEAETEVIGGNHEAETNTVHKPKRSKSESTNKAKTKSKENMKKSASEKAMAVEEEREMVERRRPQTARLERTVTVGDGDHGVDARADDFINKFKRQLRLQRLDSLLRYKEVLQGK
Secondary Structure (PSIPRED)
ccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHEHHccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHccccccccccccccccccccccccccccccHcccccHHHHccccccccccccccccccHHccHHHHHHHHcccccccccccccccccccHHHHHHcHccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mtdqstlwgcmsswltltpstLFLFVNLVIGTIAVtsrftsanrnpqqtlarapslldrvksidfslyrfptqpeqqkelhyfhqpteepptypvepapeqthqlvrapsllDRVKSInfslykfpsypaqepepepepysyanpvepepgrldrapsllervksirlpsvyrsqeaeteviggnheaetntvhkpkrsksestnkakTKSKENMKKSASEKAMAVEEEREMVERrrpqtarlertvtvgdgdhgvdaraDDFINKFKRQLRLQRLDSLLRYKEVLQGK
Flexible Loop (DISEMBL)
mtdqstlwgCMSSWLTLTPSTLFLFVNLVIGTIAVTsrftsanrnpqqtlarapsllDRVKSIDFSLYRFPTQPEQQKELHYFHQPTEEPPTYPVEPAPEQTHQLVRAPSLLDRVKSINFSLYKFPSYPAQEPEPEPEPYSYANPVEPEPGRLDRAPSLLERVksirlpsvyrsqeaeteviggnheaetntvhkpkrsksestnkaktkskenmkksasekamaveeeremverrrpqtarlertvtvgdgdhgvdaraddfinKFKRQlrlqrldsllrykevlqgk
Low Complexity Region (SEG)
MTDQSTLWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRFTSANRNPQQTLARAPSLLDRVKSIDFSLYRFPTQPEQQKELHYFHQpteepptypvepapeQTHQLVRAPSLLDRVKSINFSLYKFPSYPAQepepepepYSYANPVEPEPGRLDRAPSLLERVKSIRLPSVYRSQEAETEVIGGNHEAETNTVHKPKRSKSESTNKAKTKSKENMKKSASEKamaveeeremverrrPQTARLERTVTVGDGDHGVDARADDFINKFKrqlrlqrldsllrYKEVLQGK
Disordered region (IsUnstruct)
*****TLWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRFT***************LLDRVKSIDFSLYRF****************************************LLDRVKSINFSLYKF*********************************************************************************************************************************GVDARADDFINKFKRQLRLQRLDSLLRYK******
Disordered Region (DISOPRED)
*****TL*GCMSSWLTLTPSTLFLFVNLVIGTIAV******************************************************************************************************************************************************************************************************************************ARADDFINKFKRQLRLQRLDSLLRYKEVL***
Disordered Region (DISEMBL)
MTDQSTLWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRFTSANRNPQQTLARAPSLLDRVKSIDFSLYRFPTQPEQQKELHYFHQPTEEPPTYPVEPAPEQTHQLVRAPSLLDRVKSINFSLYKFPSY************SYANPVEPEPGRLDRAPSLLERVKSIRLPSVYRSQEAETEVIGGNHE**************************************************PQTARLERTVTVGDGDHGVDARADDFINKFKRQLRLQRLDSLLRYKEVLQGK
Disordered Region (DISPRO)
****STLWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRFT**********ARAPSLLDRVKSIDFSLYRFPT************************************PSLLDRVKSINFSLYKFPSYP******************************************************************************************************************************VDARADDFINKFKRQLRLQRLDSLLRYKEVLQG*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTDQSTLWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRFTSANRNPQQTLARAPSLLDRVKSIDFSLYRFPTQPEQQKELHYFHQPTEEPPTYPVEPAPEQTHQLVRAPSLLDRVKSINFSLYKFPSYPAQEPEPEPEPYSYANPVEPEPGRLDRAPSLLERVKSIRLPSVYRSQEAETEVIGGNHEAETNTVHKPKRSKSESTNKAKTKSKENMxxxxxxxxxxxxxxxxxxxxxRPQTARLERTVTVGDGDHGVDARADDFINKFKRQLRLQRLDSLLRYKEVLQGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
224088031	282	predicted protein [Populus trichocarpa]	0.878	0.900	0.480	5e-48
255546113	239	conserved hypothetical protein [Ricinus	0.778	0.941	0.452	3e-46
225444907	260	PREDICTED: uncharacterized protein LOC10	0.851	0.946	0.461	1e-44
9757987	318	unnamed protein product [Arabidopsis tha	0.889	0.808	0.420	3e-44
14326479	379	AT5g56980/MHM17_10 [Arabidopsis thaliana	0.923	0.704	0.381	1e-41
297796583	375	AT5g56980/MHM17_10 [Arabidopsis lyrata s	0.944	0.728	0.398	2e-41
297790254	375	AT5g56980/MHM17_10 [Arabidopsis lyrata s	0.916	0.706	0.398	6e-41
21592758	381	unknown [Arabidopsis thaliana]	0.930	0.706	0.373	2e-39
18423922	379	uncharacterized protein [Arabidopsis tha	0.930	0.709	0.372	2e-39
297799390	284	hypothetical protein ARALYDRAFT_492200 [	0.795	0.809	0.433	5e-39

>gi|224088031|ref|XP_002308298.1| predicted protein [Populus trichocarpa] gi|222854274|gb|EEE91821.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 147/306 (48%), Positives = 190/306 (62%), Gaps = 52/306 (16%)

Query: 6   TLWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRFTSANR--NPQQTLARAPSLLDRVKSI 63
           +++  ++SWLT  P +LFLF+N++I TI + SR+ + N+  +  Q LARAPSLL RVKSI
Sbjct: 4   SIFAFVTSWLT--PGSLFLFLNIMIFTIVLASRYGTHNKPVHEYQHLARAPSLLQRVKSI 61

Query: 64  D-FSLYRFPTQPEQQKELHYFHQPTEEPPTYPVEPAPEQTHQLVRAPSLLDRVKSINF-S 121
           D FS Y FP              P +EP     E  P Q   L RAPSLL RVKSI++ S
Sbjct: 62  DYFSFYNFP--------------PAQEPQNTTQEHDPPQ---LERAPSLLQRVKSIDYLS 104

Query: 122 LYKFPSYPAQEPEPEPEPYSYANPVEPEPGRLDRAPSLLERVKSIRLPSVYRSQ--EAET 179
            YKFP  PAQEPE   +        E +P +L+RAPSLLERVKSI   S+Y S   E  T
Sbjct: 105 FYKFP--PAQEPENTTQ--------EHDPPQLERAPSLLERVKSINFSSLYYSSGPEETT 154

Query: 180 EVIGGNHEAETNTV-----HKPKRSKSESTNKAKTKSKENMKKSASEKAMAVE----EER 230
           + +     ++ + V     H  KR +SE   +A TK +  MKKSASEKA++++     ER
Sbjct: 155 QRLPAQTRSDADPVSHDHDHHVKRIQSEHMVRA-TKRQVKMKKSASEKAVSLDLAEEVER 213

Query: 231 EMVERRRPQTARL-ERTVTVGD------GDHGVDARADDFINKFKRQLRLQRLDSLLRYK 283
           E VERRRP T R  E+TV +GD       D  VDA+ADDFIN+FK+QL+LQRL+SLLRYK
Sbjct: 214 EKVERRRPATTRASEKTVMIGDEEVDAKADEEVDAKADDFINRFKQQLKLQRLESLLRYK 273

Query: 284 EVLQGK 289
           E+L+GK
Sbjct: 274 EMLKGK 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546113|ref|XP_002514116.1| conserved hypothetical protein [Ricinus communis] gi|223546572|gb|EEF48070.1| conserved hypothetical protein [Ricinus communis]

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 132/292 (45%), Positives = 165/292 (56%), Gaps = 67/292 (22%)

Query: 5   STLWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRFTSANRNPQQTLARAPSLLDRVKSID 64
           S++W   + W T  P++LFLF+NLVIGTIAV SRF+S                       
Sbjct: 8   SSVWSFTTGWST--PTSLFLFLNLVIGTIAVISRFSS----------------------- 42

Query: 65  FSLYRFPTQPEQQKELHYFHQPTEEPPTYPVEPAPEQTHQLVRAPSLLDRVKSINFSLYK 124
                                  + PP   + P       L RAPSL+DRVKSIN S YK
Sbjct: 43  ----------------------NKTPPDEEIRP-------LTRAPSLIDRVKSINLSSYK 73

Query: 125 FPSYPAQEPEPE-PEPYSYANPVEPEPGRLDRAPSLLERVKSIRLPSVYRSQEAETEVIG 183
              Y  Q PE E  E   Y   V  +P RL+RAPSLLERVKSI+ PS+YRS E ETE   
Sbjct: 74  ---YSPQSPEFETAETTIYG--VSDDPPRLERAPSLLERVKSIKFPSIYRS-EPETEEHR 127

Query: 184 GNHEA---ETNTVHKPKRSKSE-STNKAKTKSKENMKKSASEKAM--AVEEEREMVERRR 237
              +    ET   H   RSKSE +  + K ++ E MKKSASE+A+    E++RE VE+RR
Sbjct: 128 DARQVSGLETELEHHVIRSKSEVAPAERKVEANEKMKKSASERAIDELREDDRESVEKRR 187

Query: 238 PQTARLERTVTVGDGDHGVDARADDFINKFKRQLRLQRLDSLLRYKEVLQGK 289
           P   RLE+T +   GD GVDA+ADDFIN+FK+QL+LQRLDSLLRY++ L+GK
Sbjct: 188 PAETRLEKTASFRGGDDGVDAKADDFINRFKQQLKLQRLDSLLRYRDRLKGK 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444907|ref|XP_002281896.1| PREDICTED: uncharacterized protein LOC100247359 [Vitis vinifera]

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/286 (46%), Positives = 167/286 (58%), Gaps = 40/286 (13%)

Query: 7   LWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRFTSANRNPQQ-TLARAPSLLDRVKSIDF 65
           +W  M+SW T  P+TLF+ +NL+IGTIAVTSRF S  RN Q   L RAPSLL+RVKS DF
Sbjct: 1   MWTLMTSWCT--PTTLFVVLNLMIGTIAVTSRF-SGQRNDQAPQLRRAPSLLERVKSFDF 57

Query: 66  SLYRFPTQPEQQKELHYFHQPTEEPPTYPVEPAPEQTHQLVRAPSLLDRVKSINFSLYKF 125
           S YR+  QP  + E+H                      QLVR PSLL+RV+S NFSLY  
Sbjct: 58  SAYRYEQQPYSEPEVHT---------------------QLVRTPSLLERVRSFNFSLYG- 95

Query: 126 PSYPAQEPE--PEPEPYSYANPVEPEPGRLDRAPSLLERVKSIRLPSVYRSQEAETEVIG 183
              P Q  E   + E +     VE +  +L R PSLLER+ S +LP ++RS    +E   
Sbjct: 96  ADQPHQSAEVGAQAEIHEDDQSVETQQPQLARTPSLLERMWSNKLP-LHRSDPFPSEPTC 154

Query: 184 GNHEAETNTVHKPKRSKSESTNK-AKTKSKENMKKSASEK-AMAVEEEREMVERRRPQTA 241
           G  +  T+        K+ES  K A  +  + MKKS S+K A    E+ + VE RRPQT 
Sbjct: 155 GTPDRNTSLGQD---MKTESEKKPAPARRSQKMKKSVSQKVASGRVEDVDAVELRRPQTV 211

Query: 242 R-----LERTVTVGDGDHGVDARADDFINKFKRQLRLQRLDSLLRY 282
           R     L  T++ GD D  VDA+ADDFIN+FK+QL+LQRLDSLLRY
Sbjct: 212 RETKSKLSETMSFGD-DEEVDAKADDFINRFKQQLKLQRLDSLLRY 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9757987|dbj|BAA97028.2| unnamed protein product [Arabidopsis thaliana]

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 143/340 (42%), Positives = 178/340 (52%), Gaps = 83/340 (24%)

Query: 7   LWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRFTSANRNPQQT------------LARAP 54
           L   ++S+ T  P+TLFL +NL+IGTI VTSR  S +R   Q             LARAP
Sbjct: 3   LLTTVASFFT--PTTLFLLLNLMIGTIVVTSRLGSGSRKHYQHHDGFGSGHAPAPLARAP 60

Query: 55  SLLDRVKSIDFSLYRFPTQPEQQKELHYFHQPTEEPPTYPVEPAPEQTHQLVRAPSLLDR 114
           S++DRVKSI+F LY+FP  PE   EL Y H           +PAP     L RAPSLLDR
Sbjct: 61  SIIDRVKSINFHLYKFP-HPE--TELFYLHP----------DPAPAP---LQRAPSLLDR 104

Query: 115 VKSINFSLYKFPSYPAQEPEPEPEPYSYANPVEP--------EPGRLD------------ 154
           VKSIN S +KF  Y        PE   YA+  EP          GR+D            
Sbjct: 105 VKSINMSYFKFQQY-------NPEENDYAHHTEPTRFESIPTRMGRVDPIDISKFRIPEE 157

Query: 155 ------------------RAPSLLERVKSIRLPSVYRSQEAETEVIGGNHEAETNTVHKP 196
                             RAPS+LERVKSI+L S YRS     +    +        H  
Sbjct: 158 DQPTGTGVNSQINPPGLTRAPSILERVKSIKLSSFYRSDPDLDQKQNPDPVLHEEHKHVR 217

Query: 197 KRSKSESTNKAKTKSKENMKKSASEKA--------MAVEEEREMVERRRPQTARLERTVT 248
            +S+S+   K K K+   M KSASEK+            E  E +ERRRP T R+ER+ +
Sbjct: 218 SKSESKKPVKKKKKALTKMTKSASEKSGFGFAGSHAEAPETVESLERRRPDTTRVERSTS 277

Query: 249 VGDGDHGVDARADDFINKFKRQLRLQRLDSLLRYKEVLQG 288
            GDG+ GVDA+A DFINKFK+QL+LQRLDS+LRYKE+L+ 
Sbjct: 278 FGDGEDGVDAKASDFINKFKQQLKLQRLDSILRYKEMLKA 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14326479|gb|AAK60285.1|AF385692_1 AT5g56980/MHM17_10 [Arabidopsis thaliana] gi|18700202|gb|AAL77711.1| AT5g56980/MHM17_10 [Arabidopsis thaliana]

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 149/391 (38%), Positives = 187/391 (47%), Gaps = 124/391 (31%)

Query: 7   LWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRFTSANRNPQQT------------LARAP 54
           L   ++S+ T  P+TLFL +NL+IGTI VTSR  S +R   Q             LARAP
Sbjct: 3   LLTTVASFFT--PTTLFLLLNLMIGTIVVTSRLGSGSRKHYQHHDGFGSGHAPAPLARAP 60

Query: 55  SLLDRVKSIDFSLYRFPTQPEQQ------------KELHYFHQPTEEP----PT------ 92
           S++DRVKSI+F LY+FP  PE +             +LH +  P   P    P+      
Sbjct: 61  SIIDRVKSINFHLYKFP-HPETELFSMTAHHDIIGSDLHVYPDPNPAPLQRAPSLLDRVK 119

Query: 93  --------YPVE-------------------PAPEQTHQLVRAPSLLDRVKSINFSLYKF 125
                   +P +                   PAP     L RAPSLLDRVKSIN S +KF
Sbjct: 120 SINMSYFKFPHDVTGSDPHSHSHSHLDLHPDPAPAP---LQRAPSLLDRVKSINMSYFKF 176

Query: 126 PSYPAQEPEPEPEPYSYANPVEP--------EPGRLD----------------------- 154
             Y        PE   YA+  EP          GR+D                       
Sbjct: 177 QQY-------NPEENDYAHHTEPTRFESIPTRMGRVDPIDISKFRIPEEDQPTGTGVNSQ 229

Query: 155 -------RAPSLLERVKSIRLPSVYRSQEAETEVIGGNHEAETNTVHKPKRSKSESTNKA 207
                  RAPS+LERVKSI+L S YRS     +    N +   +  HK  RS+SES    
Sbjct: 230 INPPGLTRAPSILERVKSIKLSSFYRSDPDLDQ--KQNPDPVLHEEHKHVRSRSESKKPV 287

Query: 208 KTKSKENMKK--SASEKA--------MAVEEEREMVERRRPQTARLERTVTVGDGDHGVD 257
           K K K   K   SASEK+            E  E +ERRRP T R+ER+ + GDG+ GVD
Sbjct: 288 KKKKKALTKMTKSASEKSGFGFAGSHAEAPETVESLERRRPDTTRVERSTSFGDGEDGVD 347

Query: 258 ARADDFINKFKRQLRLQRLDSLLRYKEVLQG 288
           A+A DFINKFK+QL+LQRLDS+LRYKE+L+ 
Sbjct: 348 AKASDFINKFKQQLKLQRLDSILRYKEMLKA 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796583|ref|XP_002866176.1| AT5g56980/MHM17_10 [Arabidopsis lyrata subsp. lyrata] gi|297312011|gb|EFH42435.1| AT5g56980/MHM17_10 [Arabidopsis lyrata subsp. lyrata]

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 152/381 (39%), Positives = 193/381 (50%), Gaps = 108/381 (28%)

Query: 7   LWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRFTSANRNPQQT------------LARAP 54
           L   ++S+ T  P+TLFL +NL+IGTI VTSR  S  R   Q             LARAP
Sbjct: 3   LLTTVASFFT--PTTLFLLLNLMIGTIVVTSRLGSGLRKHYQHHDGFGSGHAPAPLARAP 60

Query: 55  SLLDRVKSIDFSLYRFPTQPEQQ------------KELHYFHQPTEEP----PT------ 92
           SL+DRVKSI+F LY+FP  PE +             +LH +  P   P    P+      
Sbjct: 61  SLIDRVKSINFHLYKFP-HPETELFSMTAHHDVIGSDLHVYPDPNPAPLQRAPSLLDRVK 119

Query: 93  --------YP-------------VEPAPEQT-HQLVRAPSLLDRVKSINFSLYKFPSYPA 130
                   +P             ++P P+ T  QL RAPSLLDRVKSI+ S +KF  Y  
Sbjct: 120 SINMSYFKFPHDVTGSDPHSHSHLDPHPDPTPAQLQRAPSLLDRVKSIDMSYFKFQQYNP 179

Query: 131 Q--------EP-------------------------EPEPEPYSYANPVEPEPGRLDRAP 157
           +        EP                         E +P      +P++P PG L RAP
Sbjct: 180 EDKDYAIHKEPTRFENIPTRKGRVDPIDISKFRIPEEDQPTGTGINHPIDP-PG-LTRAP 237

Query: 158 SLLERVKSIRLPSVYRSQEAETEVIGGNHEAETNTVHKPKRSKSESTNKAKTKSKENMKK 217
           S+LERVKSI+L S YRS       +  N +   +  HK  RSKSES    K K K + K 
Sbjct: 238 SILERVKSIKLSSFYRSDPE----LDQNPDPVLHEEHKHVRSKSESKKPVKKKKKASTKM 293

Query: 218 --SASEKAM--------AVEEEREMVERRRPQTARLERTVTVGDGDHGVDARADDFINKF 267
             SASEK+            E  E VERRRP T R+ER+ + GDG+ GVDA+A DFINKF
Sbjct: 294 TKSASEKSGFGFTGSHEEAAETVESVERRRPDTTRVERSTSFGDGEDGVDAKASDFINKF 353

Query: 268 KRQLRLQRLDSLLRYKEVLQG 288
           K+QL+LQRLDS+LRYKE+L+ 
Sbjct: 354 KQQLKLQRLDSILRYKEMLKA 374

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790254|ref|XP_002863029.1| AT5g56980/MHM17_10 [Arabidopsis lyrata subsp. lyrata] gi|297308829|gb|EFH39288.1| AT5g56980/MHM17_10 [Arabidopsis lyrata subsp. lyrata]

 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 187/371 (50%), Gaps = 106/371 (28%)

Query: 17  LTPSTLFLFVNLVIGTIAVTSRFTSANRNPQQT------------LARAPSLLDRVKSID 64
            TP+ LFL +NL+IGTI VTSR  S +R   Q             LARAPS++DRVKSI+
Sbjct: 11  FTPTALFLLLNLMIGTIVVTSRLGSGSRKHYQHHDGFWSGHAPAPLARAPSIIDRVKSIN 70

Query: 65  FSLYRFPTQPEQQ------------KELHYFHQPTEEP----PT--------------YP 94
           F LY+FP  PE +             +LH +  P   P    P+              +P
Sbjct: 71  FHLYKFP-HPETELFSMTAHHDVIGSDLHVYPDPNPAPLQRAPSLLDRVKSINMSYFKFP 129

Query: 95  -------------VEPAPEQT-HQLVRAPSLLDRVKSINFSLYKFPSYPAQ--------E 132
                        V+P P+    QL RAPSLLDRVKSI+ S +KF  Y  +        E
Sbjct: 130 HDVTGSDPHSHSHVDPHPDPAPAQLQRAPSLLDRVKSIDMSYFKFQQYNPEDKDYAIHKE 189

Query: 133 P-------------------------EPEPEPYSYANPVEPEPGRLDRAPSLLERVKSIR 167
           P                         E +P      +P++P PG L RAPS+LERVKSI+
Sbjct: 190 PTRFENIPTRKGRVDPIDISKFRIPEEDQPTGTGINHPIDP-PG-LTRAPSILERVKSIK 247

Query: 168 LPSVYRSQEAETEVIGGNHEAETNTVHKPKRSKSESTNKAKTKSKENMKK--SASEKAM- 224
           L S YRS       +  N +   +  HK  RSKSES    K K K + K   SASEK+  
Sbjct: 248 LSSFYRSDPE----LDQNPDPVLHEEHKHVRSKSESKKPVKKKKKASTKMTKSASEKSGF 303

Query: 225 -------AVEEEREMVERRRPQTARLERTVTVGDGDHGVDARADDFINKFKRQLRLQRLD 277
                     E  E VERRRP T R+ER+ + GDG+ GVDA+A DFINKFK+QL+LQRLD
Sbjct: 304 GFTGSHEEAAETVESVERRRPDTTRVERSTSFGDGEDGVDAKASDFINKFKQQLKLQRLD 363

Query: 278 SLLRYKEVLQG 288
           S+LRYKE+L+ 
Sbjct: 364 SILRYKEMLKA 374

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592758|gb|AAM64707.1| unknown [Arabidopsis thaliana]

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 146/391 (37%), Positives = 185/391 (47%), Gaps = 122/391 (31%)

Query: 7   LWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRFTSANRNPQQT------------LARAP 54
           L   ++S+ T  P+TLFL +NL+IGTI VTSR  S +R   Q             LARAP
Sbjct: 3   LLTTVASFFT--PTTLFLLLNLMIGTIVVTSRLGSGSRKHYQHHDGFGSGHAPAPLARAP 60

Query: 55  SLLDRVKSIDFSLYRFPTQPEQQ------------KELHYFHQPTEEP----PT------ 92
           S++DRVKSI+F LY+FP  PE +             +LH +  P   P    P+      
Sbjct: 61  SIIDRVKSINFHLYKFP-HPETELFSMTAHHDIIGSDLHVYPDPNPGPLQRAPSLLDRVK 119

Query: 93  --------YPVE---------------------PAPEQTHQLVRAPSLLDRVKSINFSLY 123
                   +P +                     PAP     L RAPSLLDRVKSIN S +
Sbjct: 120 SINMSYFKFPHDVTGSDPHSHSHSHSHLDLHPDPAPAP---LQRAPSLLDRVKSINMSYF 176

Query: 124 KFPSYPAQEPEPEPEPYSYANPVEP--------EPGRLD--------------------- 154
           KF  Y        PE   YA+  EP          GR+D                     
Sbjct: 177 KFQQY-------NPEENDYAHHTEPTRFESIPTRMGRVDPIDISKFRIPEEDQPTGTGVN 229

Query: 155 ---------RAPSLLERVKSIRLPSVYRSQEAETEVIGGNHEAETNTVHKPKRSKSESTN 205
                    RAPS+LERVKSI+L S YRS     +    +        H   +S+S+   
Sbjct: 230 SQINPPGLTRAPSILERVKSIKLSSFYRSDPDLDQKQNPDPVLHEEHKHVRSKSESKKPV 289

Query: 206 KAKTKSKENMKKSASEKA--------MAVEEEREMVERRRPQTARLERTVTVGDGDHGVD 257
           K K K+   M KSASEK+            E  E VERRRP T R+ER+ + GDG+ GVD
Sbjct: 290 KKKKKALTKMTKSASEKSGFGFAGSHAEAPETVESVERRRPDTTRVERSTSFGDGEDGVD 349

Query: 258 ARADDFINKFKRQLRLQRLDSLLRYKEVLQG 288
           A+A DFINKFK+QL+LQRLDS+LRYKE+L+ 
Sbjct: 350 AKASDFINKFKQQLKLQRLDSILRYKEMLKA 380

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423922|ref|NP_568845.1| uncharacterized protein [Arabidopsis thaliana] gi|332009446|gb|AED96829.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 145/389 (37%), Positives = 185/389 (47%), Gaps = 120/389 (30%)

Query: 7   LWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRFTSANRNPQQT------------LARAP 54
           L   ++S+ T  P+TLFL +NL+IGTI VTSR  S +R   Q             LARAP
Sbjct: 3   LLTTVASFFT--PTTLFLLLNLMIGTIVVTSRLGSGSRKHYQHHDGFGSGHAPAPLARAP 60

Query: 55  SLLDRVKSIDFSLYRFPTQPEQQ------------KELHYFHQPTEEP----PT------ 92
           S++DRVKSI+F LY+FP  PE +             +LH +  P   P    P+      
Sbjct: 61  SIIDRVKSINFHLYKFP-HPETELFSMTAHHDIIGSDLHVYPDPNPAPLQRAPSLLDRVK 119

Query: 93  --------YPVE-------------------PAPEQTHQLVRAPSLLDRVKSINFSLYKF 125
                   +P +                   PAP     L RAPSLLDRVKSIN S +KF
Sbjct: 120 SINMSYFKFPHDVTGSDPHSHSHSHLDLHPDPAPAP---LQRAPSLLDRVKSINMSYFKF 176

Query: 126 PSYPAQEPEPEPEPYSYANPVEP--------EPGRLD----------------------- 154
             Y        PE   YA+  EP          GR+D                       
Sbjct: 177 QQY-------NPEENDYAHHTEPTRFESIPTRMGRVDPIDISKFRIPEEDQPTGTGVNSQ 229

Query: 155 -------RAPSLLERVKSIRLPSVYRSQEAETEVIGGNHEAETNTVHKPKRSKSESTNKA 207
                  RAPS+LERVKSI+L S YRS     +    +        H   +S+S+   K 
Sbjct: 230 INPPGLTRAPSILERVKSIKLSSFYRSDPDLDQKQNPDPVLHEEHKHVRSKSESKKPVKK 289

Query: 208 KTKSKENMKKSASEKA--------MAVEEEREMVERRRPQTARLERTVTVGDGDHGVDAR 259
           K K+   M KSASEK+            E  E +ERRRP T R+ER+ + GDG+ GVDA+
Sbjct: 290 KKKALTKMTKSASEKSGFGFAGSHAEAPETVESLERRRPDTTRVERSTSFGDGEDGVDAK 349

Query: 260 ADDFINKFKRQLRLQRLDSLLRYKEVLQG 288
           A DFINKFK+QL+LQRLDS+LRYKE+L+ 
Sbjct: 350 ASDFINKFKQQLKLQRLDSILRYKEMLKA 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799390|ref|XP_002867579.1| hypothetical protein ARALYDRAFT_492200 [Arabidopsis lyrata subsp. lyrata] gi|297313415|gb|EFH43838.1| hypothetical protein ARALYDRAFT_492200 [Arabidopsis lyrata subsp. lyrata]

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 127/293 (43%), Positives = 166/293 (56%), Gaps = 63/293 (21%)

Query: 27  NLVIGTIAVTSRFTSANR--NPQQT------------LARAPSLLDRVKSIDFSLYRFPT 72
           N  IGTI +T+RF+S +R  NP Q               R PSL+DRVKSI+F LY    
Sbjct: 21  NFTIGTIFITNRFSSGSRKHNPNQDGFGSGHDQNHARFGRPPSLIDRVKSINFHLY---N 77

Query: 73  QPEQQKELHY-FHQPTEEPPTYPVEPAPEQTHQLVRAPSLLDRVKSINFSLYKFP----- 126
            P  + E+H+    P + PP                 PSLL RVKSIN   +KFP     
Sbjct: 78  SPSPESEIHFSGSDPNQNPP-----------------PSLLQRVKSINVPYFKFPQHNSE 120

Query: 127 -SYPAQEPEPEPEPYSYANPVE--PEPGRLDR----APSLLERVKSIRLPSVYRSQEAET 179
             Y A E    PE  +  +P++  PE   +      APSLL+RVKSI+LPS+YRS    T
Sbjct: 121 GDYAAYELMTRPEETNRVDPIDKIPEDDVMTEPRFGAPSLLQRVKSIKLPSLYRSDPDPT 180

Query: 180 EVIGGNHEAETNTVHKPKRSKSESTN---KAKTKSKENMKKSASEKAMAVEEER-EMVER 235
                  E +T     P R+KSES+    K K K+ + M KSASE+ +  EEE  E VE+
Sbjct: 181 P------EEQT-----PARTKSESSKPATKKKKKATKKMMKSASERHIGREEETVEAVEK 229

Query: 236 RRPQTARLERTVTVGDG-DHGVDARADDFINKFKRQLRLQRLDSLLRYKEVLQ 287
           RRP+T R+ERT ++GDG + GVD +A +FINKFK+QL+LQRLDS LRY+E+L+
Sbjct: 230 RRPETMRVERTTSIGDGGEEGVDDKASNFINKFKQQLKLQRLDSFLRYREMLK 282

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2120815	286	AT4G26130 "AT4G26130" [Arabido	0.858	0.867	0.351	6.2e-30
TAIR|locus:2164625	379	AT5G56980 "AT5G56980" [Arabido	0.733	0.559	0.362	6.8e-24
TAIR|locus:2057427	309	AT2G26110 "AT2G26110" [Arabido	0.861	0.805	0.297	1.9e-21

TAIR|locus:2120815 AT4G26130 "AT4G26130" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 108/307 (35%), Positives = 146/307 (47%)

Query:    11 MSSWLTLTPSTLFLFVNLVIGTIAVTSRFTSANRNPQQ---------------TLARAPS 55
             +++WLT  P+TLFL +N  I TI +T+RF+S +R   Q                  R PS
Sbjct:     7 LTNWLT--PTTLFLLLNFTIATIFITNRFSSCSRKHNQHQDGYGSSGHDQNQARFGRPPS 64

Query:    56 LLDRVKSIDFSLYRFPTQPEQQKELHYFHQXXXXXXXXXXXXXXXQTHQLVRAPSLLDRV 115
             L+DRVKSI+F LY  P+ PE   E+HY                          PSLL RV
Sbjct:    65 LIDRVKSINFHLYNSPS-PES--EIHY----------------SGSDPNPNPPPSLLQRV 105

Query:   116 KSINFSLYKFPS------YPAQXXXXXXXXYSYANPVE--PEPGRLDR----APSLLERV 163
             KSIN   +KFP       Y A          +  +P++  PE          APSLL+RV
Sbjct:   106 KSINMPYFKFPQHNSEGDYAAYELMTQPDETNRVDPIDKIPEDDVTTEPRFGAPSLLQRV 165

Query:   164 KSIRLPSVYRSQEAETEVIGGNHEAETNTVHKPKRSKSESTNKAKTKSKENMKKSASEKX 223
             KSI+LPS+YRS    T       E +T+T  + K   S+   K K K+ + M KSASE+ 
Sbjct:   166 KSIKLPSLYRSDPDPTP------EVQTHT--RTKSESSKPATKKKKKATKKMMKSASERH 217

Query:   224 XXXXXXXXXXXXXX--PQTARLERTVTVGDG-DHGVDARADDFINKFKXXXXXXXXXXXX 280
                             P+T R+ERT ++GDG + GVD +A +FINKFK            
Sbjct:   218 IGREEEETVEAVEKRRPETMRVERTTSIGDGGEEGVDDKASNFINKFKQQLKLQRLDSFL 277

Query:   281 XYKEVLQ 287
              Y+E+L+
Sbjct:   278 RYREMLK 284

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2164625 AT5G56980 "AT5G56980" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 90/248 (36%), Positives = 114/248 (45%)

Query:    50 LARAPSLLDRVKSIDFSLYRFPTQPEQQKELHYFHQXXXXXXXXXXXXXXXQTHQLVRAP 109
             L RAPSLLDRVKSI+ S ++F  Q    +E  Y H                +  +    P
Sbjct:   156 LQRAPSLLDRVKSINMSYFKF--QQYNPEENDYAHHT--------------EPTRFESIP 199

Query:   110 SLLDRVKSINFSLYKFPSYPAQXXXXXXXXYSYANPVEPEPGRLDRAPSLLERVKSIRLP 169
             + + RV  I+ S ++ P    +         S  NP    PG L RAPS+LERVKSI+L 
Sbjct:   200 TRMGRVDPIDISKFRIPE---EDQPTGTGVNSQINP----PG-LTRAPSILERVKSIKLS 251

Query:   170 SVYRSQEAETEVIGGNHEAETNTVHKPKRSKSESTNKAKTKSKE--NMKKSASEKXXXXX 227
             S YRS     +    N +   +  HK  RSKSES    K K K    M KSASEK     
Sbjct:   252 SFYRSDPDLDQK--QNPDPVLHEEHKHVRSKSESKKPVKKKKKALTKMTKSASEKSGFGF 309

Query:   228 XXXXXXXXXX--------PQTARLERTVTVGDGDHGVDARADDFINKFKXXXXXXXXXXX 279
                               P T R+ER+ + GDG+ GVDA+A DFINKFK           
Sbjct:   310 AGSHAEAPETVESLERRRPDTTRVERSTSFGDGEDGVDAKASDFINKFKQQLKLQRLDSI 369

Query:   280 XXYKEVLQ 287
               YKE+L+
Sbjct:   370 LRYKEMLK 377

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2057427 AT2G26110 "AT2G26110" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 82/276 (29%), Positives = 124/276 (44%)

Query:    18 TPSTLFLFVNLVIGTIAVTSRFTSANRNPQQT-LARAPSLLDRVKSIDFSLYRFPTQPEQ 76
             TP+ LF+F+NL+IGTIA++S F+S + +P QT + R+PS++ R+KSI+FS +  P +   
Sbjct:    50 TPTVLFVFLNLMIGTIAISSSFSSKSNDPNQTQIQRSPSMIHRLKSINFSSFTSPDKSHL 109

Query:    77 QKELHYFHQXXXXXXXXXXXXXXXQTHQLVRAPSLLDRVKSINFSLYKFPSYPAQXXXXX 136
             +                       Q   L R+PS+L R+KS  F+LY + S         
Sbjct:   110 EFPPSTPEDNSNNNFHQPASIEQNQPF-LSRSPSVLHRIKS--FNLYNYISQEP------ 160

Query:   137 XXXYSYANPVEPEPGRLDRAPSLLERVKS--IRLPSVYRSQEAETEVIGGNH-EAETNTV 193
                    N +E  P      PS+    K   ++   V   QE E + +   + +   N V
Sbjct:   161 ------TNIIEASP------PSVTVETKQEQVQEQEVKEEQEEEEQSLEEVYSKLNLNHV 208

Query:   194 HKPKRSKSESTNKAKTKSKENMKKSASEKX--XXXXXXXXXXXXXXPQTARLERTVTVGD 251
              + K     +      K  + MKKSAS K                 P T ++ R  TV +
Sbjct:   209 ARTKSDTEPAAGIRPPKLPKKMKKSASTKSPFSHFQEDEISVEARRPATVKVPRVTTVEE 268

Query:   252 GDHGVDARADDFINKFKXXXXXXXXXXXXXYKEVLQ 287
              D  VDA+ADDFIN+FK             YKE+++
Sbjct:   269 ADEEVDAKADDFINRFKHQLKLQRIDSITKYKEMVK 304

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
pfam05553	38	pfam05553, DUF761, Cotton fibre expressed protein	6e-11
pfam14364	34	pfam14364, DUF4408, Domain of unknown function (DU	4e-10

>gnl|CDD|218633 pfam05553, DUF761, Cotton fibre expressed protein

 Score = 56.0 bits (136), Expect = 6e-11
 Identities = 20/35 (57%), Positives = 27/35 (77%)

Query: 252 GDHGVDARADDFINKFKRQLRLQRLDSLLRYKEVL 286
            D  VD RA++FI +F+ QLRLQR +SL RY+E+L
Sbjct: 1   SDDEVDRRAEEFIARFREQLRLQRQESLKRYQEML 35

This family consists of several plant proteins of unknown function. Three of the sequences (from Gossypium hirsutum) in this family are described as cotton fibre expressed proteins. The remaining sequences, found in Arabidopsis thaliana, are uncharacterized. Length = 38

>gnl|CDD|206532 pfam14364, DUF4408, Domain of unknown function (DUF4408)

 Score = 53.6 bits (130), Expect = 4e-10
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 7  LWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRF 39
          LW  + SWLT  P  LFL +NL+I TI  +SR 
Sbjct: 4  LWSSLLSWLT--PPYLFLVLNLIIITIVASSRL 34

This domain is found at the N-terminus of member of the DUF761 family pfam05553. Many members are plant proteins. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
PF05553	38	DUF761: Cotton fibre expressed protein; InterPro:	99.58
PF14364	34	DUF4408: Domain of unknown function (DUF4408)	99.26
COG4420	191	Predicted membrane protein [Function unknown]	80.51

>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function

Probab=99.58  E-value=1.5e-15  Score=104.38  Aligned_cols=37  Identities=57%  Similarity=0.880  Sum_probs=36.0

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 022955          253 DHGVDARADDFINKFKRQLRLQRLDSLLRYKEVLQGK  289 (289)
Q Consensus       253 ~~~VD~~Ad~FI~kF~~qlrlQr~~S~~~~~eml~rg  289 (289)
                      +++||++||+||++||+||||||++|+.+|++|++||
T Consensus         2 ~~evd~rAe~FI~~f~~qlrlqr~~S~~ry~eml~Rg   38 (38)
T PF05553_consen    2 DDEVDRRAEEFIAKFREQLRLQRQESLQRYQEMLARG   38 (38)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999999999998

Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.

>PF14364 DUF4408: Domain of unknown function (DUF4408)

Probab=99.26  E-value=2.5e-12  Score=86.53  Aligned_cols=34  Identities=53%  Similarity=0.973  Sum_probs=32.5

Q ss_pred             cchhHHHhhhhhccCCchhHHHHHHHHHHHHhhccc
Q 022955            4 QSTLWGCMSSWLTLTPSTLFLFVNLVIGTIAVTSRF   39 (289)
Q Consensus         4 ~~~~w~~~~swl~~tP~~lfl~lN~vI~tIa~tS~~   39 (289)
                      +|++|.++.+||  +|+||||++|+||+||+++||+
T Consensus         1 ~p~l~~~~~s~l--tP~~Lfv~~N~IIi~i~~~S~~   34 (34)
T PF14364_consen    1 FPSLWSSLRSWL--TPPYLFVIVNLIIITIVASSRF   34 (34)
T ss_pred             CccHHHHHHHhc--CCCeehhhhhhHHHHhhhhccC
Confidence            489999999998  9999999999999999999986

>COG4420 Predicted membrane protein [Function unknown]

Probab=80.51  E-value=1.4  Score=40.28  Aligned_cols=30  Identities=30%  Similarity=0.658  Sum_probs=22.3

Q ss_pred             hhHHHhhhhhccCC-----chhHHHHHHHHHHHHhhc
Q 022955            6 TLWGCMSSWLTLTP-----STLFLFVNLVIGTIAVTS   37 (289)
Q Consensus         6 ~~w~~~~swl~~tP-----~~lfl~lN~vI~tIa~tS   37 (289)
                      .+|.++.-|+  .|     +|=|++||++++|+|+.-
T Consensus        69 l~Wi~lNl~~--~~~~~wDpyPFi~LnLllS~~Aaiq  103 (191)
T COG4420          69 LLWIVLNLFL--VPGLAWDPYPFILLNLLLSTLAAIQ  103 (191)
T ss_pred             HHHHHHHHhh--hcCCcCCCccHHHHHHHHHHHHHHH
Confidence            4677766665  44     488999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00