Citrus Sinensis ID: 022962

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MLTWRCGVSVPIVFHLPFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEEccccccccHHHHHHccccEEEEEEccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccEEEEEcccccHHHHHHcccccccccEEEEEcccccHHHHHHHHHHHHHHccEEEEEEEEEcccccccEEEEEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccEcccccHHHHEEccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHcHHHcccccccccccccEEEEEccccccccccEEEEccccEEEEEHHHHHHHHHHHHHHHHHccccEEEEEccHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHccccEccccEEEEEccccHHHHHHHHHHHHHHHccEEEEEEEEEccccccccEEEEEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
mltwrcgvsvpivfhLPFSARTLikhlpssnqntfcphrtraktltttrivnsshfetLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHiddslaiippiknsytshcdsscnsnlklvdvgtgaglpgLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAetlgkdvsfrEQYDVAVARAVAEMRILAEYCLPLVRVGGLFvaakghdpqeevkNSERAVQLMGASLLQLcsvesqspfgqrtAVVCLksrrtpkkyprdpgtpakvpl
Flexible Loop (DISEMBL)
mltwrcgvsvpIVFHLPFSARTLIKHlpssnqntfcphrTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAEtlgkdvsfreQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVesqspfgqrtavvclksrrtpkkyprdpgtpakvpl
Low Complexity Region (SEG)
MLTWRCGVSVPIVFHLPFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL
Disordered region (IsUnstruct)
**TWRCGVSVPIVFHLPFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK***************QLMGASLLQLCSVE****FGQRTAVVCL*********************
Disordered Region (DISOPRED)
*******VSVPIVFHLPFSARTLIKHLPS***************LTTTRIVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTP**VP*
Disordered Region (DISEMBL)
MLTWRCGVSVPIVFHLPFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRT****************
Disordered Region (DISPRO)
MLTWRCGVSVPIVFHLPFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRD*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTWRCGVSVPIVFHLPFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
A3DHY6	242	Ribosomal RNA small subun	yes	no	0.754	0.900	0.431	1e-49
Q630C0	239	Ribosomal RNA small subun	yes	no	0.761	0.920	0.414	1e-48
Q814F8	239	Ribosomal RNA small subun	yes	no	0.761	0.920	0.414	2e-48
B7H7A0	239	Ribosomal RNA small subun	yes	no	0.761	0.920	0.414	2e-48
B7IST2	239	Ribosomal RNA small subun	yes	no	0.761	0.920	0.414	2e-48
Q6HAF4	239	Ribosomal RNA small subun	yes	no	0.761	0.920	0.414	2e-48
B9IT40	239	Ribosomal RNA small subun	yes	no	0.761	0.920	0.414	2e-48
C1ER75	239	Ribosomal RNA small subun	yes	no	0.761	0.920	0.414	2e-48
Q72WU5	239	Ribosomal RNA small subun	yes	no	0.761	0.920	0.414	2e-48
B7JIK9	239	Ribosomal RNA small subun	yes	no	0.761	0.920	0.414	2e-48

>sp|A3DHY6|RSMG_CLOTH Ribosomal RNA small subunit methyltransferase G OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rsmG PE=3 SV=1

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 146/234 (62%), Gaps = 16/234 (6%)

Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
            L+  Q ++   Y D L +WN+KMNLTA++D  E++ +H  DS++I P IK+        
Sbjct: 22  NLDDEQIDKFFAYKDVLKEWNQKMNLTAIEDDEEIILKHFIDSISICPIIKDK------- 74

Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
               NL L+DVGTGAG PG+ + I  P+ KV LL+S+ KR  FL   +    L ++  V 
Sbjct: 75  ----NLALIDVGTGAGFPGIPVKIVFPELKVKLLDSLEKRTKFLNEVIERLDLKDISTVH 130

Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
            RAE  G D  +RE+YD++VARAVA + +L EYCLP V+VGG F+A KG+   EEV+NS+
Sbjct: 131 ARAEEKGVDPDYREKYDISVARAVASLPVLLEYCLPFVKVGGCFIAMKGN-STEEVENSK 189

Query: 238 RAVQLMGASLLQLCSVESQSPFG--QRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
           +A++++G  +  +  +E   PF   +R  +V  K R+TP KYPR  G P+K PL
Sbjct: 190 KALEILGGKIEDI--LEFNLPFSDIKRNVIVIKKFRQTPTKYPRKSGKPSKNPL 241

Specifically methylates the N7 position of a guanosine in 16S rRNA.
Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q630C0|RSMG_BACCZ Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain ZK / E33L) GN=rsmG PE=3 SV=1

 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/234 (41%), Positives = 141/234 (60%), Gaps = 14/234 (5%)

Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
           TL++RQ EQ  +Y + L++WN KMNLTA+ +  EV  +H  DS+          T+    
Sbjct: 16  TLSSRQLEQFEIYFETLVEWNEKMNLTAITEKEEVYLKHFFDSI----------TAAFYY 65

Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
             +    + DVG GAG P + L I  P  KVT+++S+ KR  FL H     +L +V    
Sbjct: 66  DFSKPFSICDVGAGAGFPSIPLKICFPHLKVTIVDSLQKRINFLNHLAQKLELSDVAFCH 125

Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
            RAET GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG   +EE++N +
Sbjct: 126 DRAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAAKEEIENGK 185

Query: 238 RAVQLMGASLLQLCSVESQSPF--GQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
            A++++G  L ++ +   Q PF   +R  ++  K R+TPKKYPR PGTP K+P+
Sbjct: 186 YALEVLGGDLKEMSTF--QLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Bacillus cereus (strain ZK / E33L) (taxid: 288681)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q814F8|RSMG_BACCR Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rsmG PE=3 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/234 (41%), Positives = 140/234 (59%), Gaps = 14/234 (5%)

Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
           TL++RQ EQ  +Y + L++WN KMNLTA+ +  EV  +H  DS+          T+    
Sbjct: 16  TLSSRQLEQFKIYFETLVEWNEKMNLTAITEKEEVYLKHFFDSI----------TAAFYY 65

Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
             +    + DVG GAG P + L I  P  KVT+++S+ KR  FL H     +L +V    
Sbjct: 66  DFSKPFSICDVGAGAGFPSIPLKICFPHLKVTIVDSLQKRINFLNHLAQKLELSDVAFCH 125

Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
            RAET GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N +
Sbjct: 126 DRAETFGKKEGVRESYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGK 185

Query: 238 RAVQLMGASLLQLCSVESQSPF--GQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
            A++++G  L ++ +   Q PF   +R  ++  K R+TPKKYPR PGTP K+P+
Sbjct: 186 YALEVLGGELKEMSTF--QLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B7H7A0|RSMG_BACC4 Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain B4264) GN=rsmG PE=3 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/234 (41%), Positives = 140/234 (59%), Gaps = 14/234 (5%)

Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
           TL++RQ EQ  +Y + L++WN KMNLTA+ +  EV  +H  DS+          T+    
Sbjct: 16  TLSSRQLEQFKIYFETLVEWNEKMNLTAITEKEEVYLKHFFDSI----------TAAFYY 65

Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
             +    + DVG GAG P + L I  P  KVT+++S+ KR  FL H     +L +V    
Sbjct: 66  DFSKPFSICDVGAGAGFPSIPLKICFPHLKVTIVDSLQKRINFLNHLAQKLELSDVAFCH 125

Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
            RAET GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N +
Sbjct: 126 DRAETFGKKEGVRESYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGK 185

Query: 238 RAVQLMGASLLQLCSVESQSPF--GQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
            A++++G  L ++ +   Q PF   +R  ++  K R+TPKKYPR PGTP K+P+
Sbjct: 186 YALEVLGGELKEMSTF--QLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Bacillus cereus (strain B4264) (taxid: 405532)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B7IST2|RSMG_BACC2 Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain G9842) GN=rsmG PE=3 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/234 (41%), Positives = 140/234 (59%), Gaps = 14/234 (5%)

Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
           TL++RQ EQ  +Y + L++WN KMNLTA+ +  EV  +H  DS+          T+    
Sbjct: 16  TLSSRQLEQFKIYFETLVEWNEKMNLTAITEKEEVYLKHFFDSI----------TAAFYY 65

Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
             +    + DVG GAG P + L I  P  KVT+++S+ KR  FL H     +L +V    
Sbjct: 66  DFSKPFSICDVGAGAGFPSIPLKICFPHLKVTIVDSLQKRINFLNHLAQKLELSDVAFCH 125

Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
            RAET GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N +
Sbjct: 126 DRAETFGKKEGVRESYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGK 185

Query: 238 RAVQLMGASLLQLCSVESQSPF--GQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
            A++++G  L ++ +   Q PF   +R  ++  K R+TPKKYPR PGTP K+P+
Sbjct: 186 YALEVLGGELKEMSTF--QLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Bacillus cereus (strain G9842) (taxid: 405531)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6HAF4|RSMG_BACHK Ribosomal RNA small subunit methyltransferase G OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rsmG PE=3 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/234 (41%), Positives = 140/234 (59%), Gaps = 14/234 (5%)

Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
           TL++RQ EQ  +Y + L++WN KMNLTA+ +  EV  +H  DS+          T+    
Sbjct: 16  TLSSRQLEQFEIYFETLVEWNEKMNLTAITEKEEVYLKHFFDSI----------TAAFYY 65

Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
             +    + DVG GAG P + L I  P  KVT+++S+ KR  FL H     +L +V    
Sbjct: 66  DFSKPFSICDVGAGAGFPSIPLKICFPHLKVTIVDSLQKRINFLNHLAQKLELSDVAFCH 125

Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
            RAET GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N +
Sbjct: 126 DRAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGK 185

Query: 238 RAVQLMGASLLQLCSVESQSPF--GQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
            A++++G  L ++ +   Q PF   +R  ++  K R+TPKKYPR PGTP K+P+
Sbjct: 186 YALEVLGGDLKEMSTF--QLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Bacillus thuringiensis subsp. konkukian (strain 97-27) (taxid: 281309)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B9IT40|RSMG_BACCQ Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain Q1) GN=rsmG PE=3 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/234 (41%), Positives = 140/234 (59%), Gaps = 14/234 (5%)

Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
           TL++RQ EQ  +Y + L++WN KMNLTA+ +  EV  +H  DS+          T+    
Sbjct: 16  TLSSRQLEQFEIYFETLVEWNEKMNLTAITEKEEVYLKHFFDSI----------TAAFYY 65

Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
             +    + DVG GAG P + L I  P  KVT+++S+ KR  FL H     +L +V    
Sbjct: 66  DFSKPFSICDVGAGAGFPSIPLKICFPHLKVTIVDSLQKRINFLNHLAQKLELSDVAFCH 125

Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
            RAET GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N +
Sbjct: 126 DRAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGK 185

Query: 238 RAVQLMGASLLQLCSVESQSPF--GQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
            A++++G  L ++ +   Q PF   +R  ++  K R+TPKKYPR PGTP K+P+
Sbjct: 186 YALEVLGGDLKEMSTF--QLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Bacillus cereus (strain Q1) (taxid: 361100)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|C1ER75|RSMG_BACC3 Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain 03BB102) GN=rsmG PE=3 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/234 (41%), Positives = 140/234 (59%), Gaps = 14/234 (5%)

Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
           TL++RQ EQ  +Y + L++WN KMNLTA+ +  EV  +H  DS+          T+    
Sbjct: 16  TLSSRQLEQFEIYFETLVEWNEKMNLTAITEKEEVYLKHFFDSI----------TAAFYY 65

Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
             +    + DVG GAG P + L I  P  KVT+++S+ KR  FL H     +L +V    
Sbjct: 66  DFSKPFSICDVGAGAGFPSIPLKICFPHLKVTIVDSLQKRINFLNHLAQKLELSDVAFCH 125

Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
            RAET GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N +
Sbjct: 126 DRAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGK 185

Query: 238 RAVQLMGASLLQLCSVESQSPF--GQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
            A++++G  L ++ +   Q PF   +R  ++  K R+TPKKYPR PGTP K+P+
Sbjct: 186 YALEVLGGDLKEMSTF--QLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Bacillus cereus (strain 03BB102) (taxid: 572264)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q72WU5|RSMG_BACC1 Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain ATCC 10987) GN=rsmG PE=3 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/234 (41%), Positives = 140/234 (59%), Gaps = 14/234 (5%)

Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
           TL++RQ EQ  +Y + L++WN KMNLTA+ +  EV  +H  DS+          T+    
Sbjct: 16  TLSSRQLEQFEIYFETLVEWNEKMNLTAITEKEEVYLKHFFDSI----------TAAFYY 65

Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
             +    + DVG GAG P + L I  P  KVT+++S+ KR  FL H     +L +V    
Sbjct: 66  DFSKPFSICDVGAGAGFPSIPLKICFPHLKVTIVDSLQKRINFLNHLAQKLELSDVAFCH 125

Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
            RAET GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N +
Sbjct: 126 DRAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGK 185

Query: 238 RAVQLMGASLLQLCSVESQSPF--GQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
            A++++G  L ++ +   Q PF   +R  ++  K R+TPKKYPR PGTP K+P+
Sbjct: 186 YALEVLGGDLKEMSTF--QLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Bacillus cereus (strain ATCC 10987) (taxid: 222523)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B7JIK9|RSMG_BACC0 Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain AH820) GN=rsmG PE=3 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/234 (41%), Positives = 140/234 (59%), Gaps = 14/234 (5%)

Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
           TL++RQ EQ  +Y + L++WN KMNLTA+ +  EV  +H  DS+          T+    
Sbjct: 16  TLSSRQLEQFEIYFETLVEWNEKMNLTAITEKEEVYLKHFFDSI----------TAAFYY 65

Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
             +    + DVG GAG P + L I  P  KVT+++S+ KR  FL H     +L +V    
Sbjct: 66  DFSKPFSICDVGAGAGFPSIPLKICFPHLKVTIVDSLQKRINFLNHLAQKLELSDVAFCH 125

Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
            RAET GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N +
Sbjct: 126 DRAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGK 185

Query: 238 RAVQLMGASLLQLCSVESQSPF--GQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
            A++++G  L ++ +   Q PF   +R  ++  K R+TPKKYPR PGTP K+P+
Sbjct: 186 YALEVLGGDLKEMSTF--QLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Bacillus cereus (strain AH820) (taxid: 405535)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
359491270	285	PREDICTED: ribosomal RNA small subunit m	0.986	1.0	0.726	1e-115
224121638	288	predicted protein [Populus trichocarpa]	0.986	0.989	0.691	1e-115
449469503	281	PREDICTED: ribosomal RNA small subunit m	0.930	0.957	0.701	1e-110
255540789	282	Methyltransferase gidB, putative [Ricinu	0.958	0.982	0.684	1e-109
356512958	274	PREDICTED: ribosomal RNA small subunit m	0.927	0.978	0.661	1e-102
357477267	518	Ribosomal RNA small subunit methyltransf	0.916	0.511	0.654	1e-102
240256423	292	glucose inhibited division protein B [Ar	0.920	0.910	0.660	1e-101
10177222	329	unnamed protein product [Arabidopsis tha	0.903	0.793	0.650	4e-97
356565039	263	PREDICTED: LOW QUALITY PROTEIN: ribosoma	0.906	0.996	0.628	2e-94
148907902	301	unknown [Picea sitchensis]	0.823	0.790	0.621	1e-85

>gi|359491270|ref|XP_002283664.2| PREDICTED: ribosomal RNA small subunit methyltransferase G-like [Vitis vinifera] gi|297733841|emb|CBI15088.3| unnamed protein product [Vitis vinifera]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/289 (72%), Positives = 243/289 (84%), Gaps = 4/289 (1%)

Query: 1   MLTWRCGVSVPIVFHLPFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLN 60
           ML WR    VP V   P S  T +K + +S    F PHR   KTLTTT+++NSS+FETLN
Sbjct: 1   MLVWRG--KVPGVSS-PLSVGTFVKQVTTSISTRFRPHRIATKTLTTTKVLNSSYFETLN 57

Query: 61  TRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCN 120
             Q++QI LYVDALLQWN+KMNLTAV   +EVMERH+ DSLA+IPPI++SY +HCDSSCN
Sbjct: 58  PLQKQQISLYVDALLQWNQKMNLTAVTKADEVMERHVGDSLAMIPPIQSSYIAHCDSSCN 117

Query: 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA 180
            N+ LVDVG+G GLPGL+LAIACP WK+TLLESMNKRC+FLEHAVSLT L NVQ+VRGRA
Sbjct: 118 -NISLVDVGSGPGLPGLILAIACPSWKITLLESMNKRCIFLEHAVSLTGLSNVQVVRGRA 176

Query: 181 ETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAV 240
           E LG+++ FRE +DVAVARAVAEMRILAEYCLPLVRVGGLF+AAKGHDPQEEV+N+ERA+
Sbjct: 177 ENLGQNIGFREVFDVAVARAVAEMRILAEYCLPLVRVGGLFLAAKGHDPQEEVRNAERAI 236

Query: 241 QLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
           QLMGAS+LQLCSVES SPFGQRTA+VCLK   TP+KYPRDPGTP K PL
Sbjct: 237 QLMGASVLQLCSVESHSPFGQRTAIVCLKDCPTPRKYPRDPGTPVKSPL 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121638|ref|XP_002318633.1| predicted protein [Populus trichocarpa] gi|222859306|gb|EEE96853.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/292 (69%), Positives = 242/292 (82%), Gaps = 7/292 (2%)

Query: 1   MLTWRCGVSVPIVFHLPFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIV---NSSHFE 57
           ML WRC    P     P S  T +KH        F  HR +AK+LT    +   NSS F+
Sbjct: 1   MLVWRCK---PPAVPFPLSLGTFVKHFSVIEPKAFPLHRIKAKSLTAAASIGTHNSSCFD 57

Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
           + + RQ++QI LYVD LLQWN+KMNLTAV DV+EVMERHI+DSLAI+PPI++SY SHC++
Sbjct: 58  SFSCRQKKQIRLYVDTLLQWNQKMNLTAVTDVDEVMERHIEDSLAILPPIQDSYVSHCNA 117

Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
           S +S +KLVDVGTGAGLPGLVLAIACP WKVTLLESMNKRC FLEHA+S+T L NV++VR
Sbjct: 118 SIDS-IKLVDVGTGAGLPGLVLAIACPAWKVTLLESMNKRCDFLEHAISVTGLSNVEVVR 176

Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
           GRAE LG++VSFRE++DVAVARAVAEMRILAEYCLPLVRVGGLF+AAKGHDPQEEV+N+E
Sbjct: 177 GRAENLGQNVSFREKFDVAVARAVAEMRILAEYCLPLVRVGGLFIAAKGHDPQEEVRNAE 236

Query: 238 RAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
           R+++LMG+S LQLCSVES+SP+GQRTA++C K R TP+KYPRDPGTPAK+PL
Sbjct: 237 RSLKLMGSSTLQLCSVESRSPYGQRTAIICSKDRPTPRKYPRDPGTPAKLPL 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469503|ref|XP_004152459.1| PREDICTED: ribosomal RNA small subunit methyltransferase G-like [Cucumis sativus] gi|449527787|ref|XP_004170891.1| PREDICTED: ribosomal RNA small subunit methyltransferase G-like [Cucumis sativus]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/278 (70%), Positives = 230/278 (82%), Gaps = 9/278 (3%)

Query: 18  FSARTLIKH---LPSSNQNTFCPHRTRAKTLTTTRIVNSS---HFETLNTRQQEQIHLYV 71
           FS RT IK    LP     +F P RT  K LT T   NSS   HFETL +RQ++Q+HL+V
Sbjct: 7   FSLRTFIKQFSPLPKRTPFSF-PIRTSFKRLTVT--CNSSRFLHFETLTSRQKDQVHLFV 63

Query: 72  DALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTG 131
           DALLQWN+KMNLTA+ +VNEVMERH++DSLAIIPPI+N Y SHC +S   ++KLVDVGTG
Sbjct: 64  DALLQWNQKMNLTAITEVNEVMERHVEDSLAIIPPIRNLYMSHCSTSPCDDIKLVDVGTG 123

Query: 132 AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFRE 191
           AGLPGL++AIACP+W+VTL+ESMNKRC+FLEHAV  T L NVQ+VRGRAE LG D+S RE
Sbjct: 124 AGLPGLIIAIACPEWQVTLMESMNKRCLFLEHAVGHTGLTNVQVVRGRAENLGHDLSLRE 183

Query: 192 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC 251
           ++DV VARAVAEMRILAEYCLP+VRVGGLF+AAKGHDP  EV N+E+A+++MGASLLQ+C
Sbjct: 184 KFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLAEVTNAEKAIEMMGASLLQIC 243

Query: 252 SVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
            VES SP+GQRTAVVC K R TP+KYPRDPGTPAK PL
Sbjct: 244 PVESHSPYGQRTAVVCFKERHTPRKYPRDPGTPAKSPL 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540789|ref|XP_002511459.1| Methyltransferase gidB, putative [Ricinus communis] gi|223550574|gb|EEF52061.1| Methyltransferase gidB, putative [Ricinus communis]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/282 (68%), Positives = 231/282 (81%), Gaps = 5/282 (1%)

Query: 1   MLTWRCGVSVPIVFHLPFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLN 60
           ML   C ++VP    L FS     + LP +      P R  AK LT T I  +S FE+LN
Sbjct: 1   MLVRLCRINVP----LCFSVGNFTERLPVAKLKASSPRRINAKALTATAIHTTSCFESLN 56

Query: 61  TRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCN 120
           +RQ+EQI  YVDALL+WN+KMNLTAV + NEVM RHI+DSLA++ PI+ SY SHC SS +
Sbjct: 57  SRQKEQIRHYVDALLEWNQKMNLTAVTEANEVMRRHIEDSLAMLTPIRKSYISHCSSSID 116

Query: 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA 180
            NLKLVDVGTG GLPGL+LAIACP WKVTLLESMNKRCVFLEHAV++T L NV+++RGRA
Sbjct: 117 -NLKLVDVGTGPGLPGLILAIACPGWKVTLLESMNKRCVFLEHAVNVTGLSNVEVLRGRA 175

Query: 181 ETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAV 240
           E+LG++ SFREQ+DVAVARAVAEMR+LAEYCLPLVRVGGLF+AAKGHDPQEEV+N+ER++
Sbjct: 176 ESLGQNDSFREQFDVAVARAVAEMRVLAEYCLPLVRVGGLFIAAKGHDPQEEVRNAERSI 235

Query: 241 QLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPG 282
           QLMGAS+LQLCSVES SP+GQRTA++ +K R TP+KYPRDPG
Sbjct: 236 QLMGASVLQLCSVESHSPYGQRTAIISVKDRPTPRKYPRDPG 277

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512958|ref|XP_003525181.1| PREDICTED: ribosomal RNA small subunit methyltransferase G-like [Glycine max]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/275 (66%), Positives = 223/275 (81%), Gaps = 7/275 (2%)

Query: 15  HLPFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDAL 74
           +L FS  T  KHL +  +    P   + K++ T      SHF  L +RQ++QIHLYV+ L
Sbjct: 7   NLQFSRWTFFKHL-TPRKFKLAPPLCQHKSVATL-----SHFGILTSRQKDQIHLYVETL 60

Query: 75  LQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGL 134
           LQWN++MNLTAV++VNEVMERH++DSLAI+PP+ + Y SHC +SC+  L LVDVGTGAGL
Sbjct: 61  LQWNKRMNLTAVREVNEVMERHVEDSLAILPPLSDCYRSHCSASCD-KLSLVDVGTGAGL 119

Query: 135 PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYD 194
           PG+VLAIA P+W VTL+ESMNKRCVFLEH V +    N++IVRGRAE+LG++  FREQ+D
Sbjct: 120 PGVVLAIARPEWDVTLMESMNKRCVFLEHVVGVIGSSNIKIVRGRAESLGQNPCFREQFD 179

Query: 195 VAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 254
           +AVARAVAEMRILAEYCLPLVRVGGLF+AAKGHDP++E+K +E A+Q +GASLLQ+CSVE
Sbjct: 180 IAVARAVAEMRILAEYCLPLVRVGGLFIAAKGHDPEDEIKKAESAIQKVGASLLQVCSVE 239

Query: 255 SQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
           SQSP+GQRTAVVC K R TP KYPRDPGTPAK PL
Sbjct: 240 SQSPYGQRTAVVCSKDRPTPMKYPRDPGTPAKEPL 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477267|ref|XP_003608919.1| Ribosomal RNA small subunit methyltransferase G [Medicago truncatula] gi|355509974|gb|AES91116.1| Ribosomal RNA small subunit methyltransferase G [Medicago truncatula]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/275 (65%), Positives = 221/275 (80%), Gaps = 10/275 (3%)

Query: 15  HLPFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDAL 74
           +L FS  T  KHL      T C + + +         N SHF TL +RQ++QIHLYVD L
Sbjct: 241 NLQFSRWTFFKHLTPRKYTTLCQNNSTS---------NLSHFLTLTSRQKDQIHLYVDTL 291

Query: 75  LQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGL 134
           LQWN++MNLTAVK+VNEVMERHI+DSLAI+PP+ ++Y SH   S +  +KLVDVGTGAGL
Sbjct: 292 LQWNKRMNLTAVKEVNEVMERHIEDSLAILPPLSDNYMSHSSKSID-KVKLVDVGTGAGL 350

Query: 135 PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYD 194
           PG+VLAIA PDW VTL+ESMNKRCVFLEH V +    N+QIVRGRAE+LG+++ +RE++D
Sbjct: 351 PGVVLAIARPDWDVTLMESMNKRCVFLEHVVGVIGSSNLQIVRGRAESLGQNLCYREKFD 410

Query: 195 VAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 254
           +AVARAVAE R+LAEYCLPLVRVGG+F+AAKGHDP++EVK +E A++ MGASLLQ+CSVE
Sbjct: 411 IAVARAVAETRVLAEYCLPLVRVGGMFIAAKGHDPEDEVKKAENAIKKMGASLLQVCSVE 470

Query: 255 SQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
           SQSP+GQRTAV+CLK R TP KYPR PGTP+K PL
Sbjct: 471 SQSPYGQRTAVICLKDRPTPMKYPRFPGTPSKEPL 505

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256423|ref|NP_568720.4| glucose inhibited division protein B [Arabidopsis thaliana] gi|332008514|gb|AED95897.1| glucose inhibited division protein B [Arabidopsis thaliana]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/268 (66%), Positives = 218/268 (81%), Gaps = 2/268 (0%)

Query: 23  LIKHLPSSNQNTFCPHRTRAKTLTTTRI-VNSSHFETLNTRQQEQIHLYVDALLQWNRKM 81
           LIKHLP +  +TF   R   K L+   +   +S F+TL++ QQ+QIHLYVD LLQWN+KM
Sbjct: 26  LIKHLPCTKSHTFLRRRFHYKALSNATVSTTASCFKTLSSSQQDQIHLYVDTLLQWNQKM 85

Query: 82  NLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAI 141
           NLTA K+ +EVMERHI+DSLAI+PPIK  Y  H  S    ++ L+DVG+GAGLPGLVLAI
Sbjct: 86  NLTATKEADEVMERHIEDSLAILPPIKTCYNLH-SSDLFDHINLIDVGSGAGLPGLVLAI 144

Query: 142 ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201
           ACPDW+VTLLES+NKRCVFLEH V++T L NV IVRGRAE+ G DV +RE++DVA+ARAV
Sbjct: 145 ACPDWRVTLLESINKRCVFLEHVVNVTGLTNVTIVRGRAESCGHDVMYREKFDVAIARAV 204

Query: 202 AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ 261
           AEMR+LAEYCLPLVR+GGLFVAAKGHDP+EEV+N+E AV+L+G S+LQ+  V+S SP+GQ
Sbjct: 205 AEMRVLAEYCLPLVRIGGLFVAAKGHDPKEEVQNAENAVRLLGGSILQISPVDSHSPYGQ 264

Query: 262 RTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
           RT VVC K   TP+KYPR+ GTPAK+PL
Sbjct: 265 RTTVVCRKDHSTPQKYPREAGTPAKLPL 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177222|dbj|BAB10297.1| unnamed protein product [Arabidopsis thaliana]

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 171/263 (65%), Positives = 211/263 (80%), Gaps = 2/263 (0%)

Query: 23  LIKHLPSSNQNTFCPHRTRAKTLTTTRI-VNSSHFETLNTRQQEQIHLYVDALLQWNRKM 81
           LIKHLP +  +TF   R   K L+   +   +S F+TL++ QQ+QIHLYVD LLQWN+KM
Sbjct: 26  LIKHLPCTKSHTFLRRRFHYKALSNATVSTTASCFKTLSSSQQDQIHLYVDTLLQWNQKM 85

Query: 82  NLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAI 141
           NLTA K+ +EVMERHI+DSLAI+PPIK  Y  H  S    ++ L+DVG+GAGLPGLVLAI
Sbjct: 86  NLTATKEADEVMERHIEDSLAILPPIKTCYNLH-SSDLFDHINLIDVGSGAGLPGLVLAI 144

Query: 142 ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201
           ACPDW+VTLLES+NKRCVFLEH V++T L NV IVRGRAE+ G DV +RE++DVA+ARAV
Sbjct: 145 ACPDWRVTLLESINKRCVFLEHVVNVTGLTNVTIVRGRAESCGHDVMYREKFDVAIARAV 204

Query: 202 AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ 261
           AEMR+LAEYCLPLVR+GGLFVAAKGHDP+EEV+N+E AV+L+G S+LQ+  V+S SP+GQ
Sbjct: 205 AEMRVLAEYCLPLVRIGGLFVAAKGHDPKEEVQNAENAVRLLGGSILQISPVDSHSPYGQ 264

Query: 262 RTAVVCLKSRRTPKKYPRDPGTP 284
           RT VVC K   TP+KYPR+   P
Sbjct: 265 RTTVVCRKDHSTPQKYPREAEDP 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565039|ref|XP_003550752.1| PREDICTED: LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase G-like [Glycine max]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 176/280 (62%), Positives = 212/280 (75%), Gaps = 18/280 (6%)

Query: 10  VPIVFHLPFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHL 69
           +P   +L FS  T  KHL +  +    P   + K+L T      SHF TL +RQ++QIHL
Sbjct: 2   LPSTSNLKFSRWTFFKHL-TPRKFKLTPPLCQHKSLATL-----SHFGTLTSRQKDQIHL 55

Query: 70  YVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVG 129
           YV+ LLQWN++MNLTAV++VNE MERH++DS             HC +SCN  L LVDVG
Sbjct: 56  YVETLLQWNKRMNLTAVREVNEGMERHVEDS-----------AXHCGASCN-KLSLVDVG 103

Query: 130 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF 189
           TGAGLPG+VLAI  P+W VTL+ESMNKRCVFLEH V +    N+QIVRGRAE+LG+D  F
Sbjct: 104 TGAGLPGIVLAITRPEWDVTLMESMNKRCVFLEHVVGVIGSSNIQIVRGRAESLGQDPCF 163

Query: 190 REQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ 249
           REQ+DVAVARAVAEMRILAEYCLPLVRVGGLF+AAKGHDP++E+K +E A+Q +GASLLQ
Sbjct: 164 REQFDVAVARAVAEMRILAEYCLPLVRVGGLFIAAKGHDPEDEIKKAESAIQKVGASLLQ 223

Query: 250 LCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
           +CSVESQSP+GQRTAV+C K R TP KYPRDP  PAK P+
Sbjct: 224 VCSVESQSPYGQRTAVICSKDRPTPIKYPRDPCAPAKEPM 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148907902|gb|ABR17072.1| unknown [Picea sitchensis]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 148/238 (62%), Positives = 196/238 (82%)

Query: 52  NSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSY 111
           N    +TL+ +QQEQ  L+V+ LL+WN++MNLTAV +   VMERH++DSLA++P I+N+Y
Sbjct: 64  NPRLLDTLSMKQQEQTSLFVNTLLEWNQRMNLTAVTEHCAVMERHVEDSLALLPIIENAY 123

Query: 112 TSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL 171
            ++C +  +  L LVDVG+GAGLPG++LAIA PDW++TL+ES+ KRC FLEH V ++ L 
Sbjct: 124 KNNCPTMESVRLNLVDVGSGAGLPGIILAIARPDWQITLIESLQKRCFFLEHVVDVSGLS 183

Query: 172 NVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQE 231
           N Q+VR RAE  G++  FRE+YD+AVARAVA+MRILAEYCLPLVRVGGL VAAKG++PQE
Sbjct: 184 NAQVVRIRAEDAGQNPDFREKYDIAVARAVADMRILAEYCLPLVRVGGLLVAAKGYNPQE 243

Query: 232 EVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
           EV+N+++A++LMGAS+LQLCSV S+ P+G+RTAV+CLK+R TP KYPR PG P K PL
Sbjct: 244 EVENAKKAIRLMGASMLQLCSVTSEGPYGKRTAVLCLKNRPTPPKYPRHPGIPTKKPL 301

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2170051	292	AT5G50110 [Arabidopsis thalian	0.951	0.941	0.647	3e-94
UNIPROTKB|Q81JH4	239	rsmG "Ribosomal RNA small subu	0.761	0.920	0.418	5e-44
TIGR_CMR|BA_5732	239	BA_5732 "glucose-inhibited div	0.761	0.920	0.418	5e-44
UNIPROTKB|Q3AG54	235	rsmG "Ribosomal RNA small subu	0.747	0.919	0.417	1.3e-38
TIGR_CMR|CHY_0008	235	CHY_0008 "glucose-inhibited di	0.747	0.919	0.417	1.3e-38
UNIPROTKB|Q71VW1	238	rsmG "Ribosomal RNA small subu	0.764	0.928	0.372	5.5e-38
UNIPROTKB|Q97QD4	237	rsmG "Ribosomal RNA small subu	0.757	0.924	0.377	3.1e-35
TIGR_CMR|DET_0776	235	DET_0776 "methyltransferase Gi	0.761	0.936	0.356	7.1e-29
UNIPROTKB|P0A6U5	207	rsmG "16S rRNA m7G527 methyltr	0.629	0.879	0.316	1.1e-21
UNIPROTKB|P94614	204	rsmG "Ribosomal RNA small subu	0.543	0.769	0.321	5.7e-20

TAIR|locus:2170051 AT5G50110 [Arabidopsis thaliana (taxid:3702)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 180/278 (64%), Positives = 222/278 (79%)

Query:    13 VFHLPFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRI-VNSSHFETLNTRQQEQIHLYV 71
             V H+  S   LIKHLP +  +TF   R   K L+   +   +S F+TL++ QQ+QIHLYV
Sbjct:    17 VSHI-LSLGHLIKHLPCTKSHTFLRRRFHYKALSNATVSTTASCFKTLSSSQQDQIHLYV 75

Query:    72 DALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTG 131
             D LLQWN+KMNLTA K+ +EVMERHI+DSLAI+PPIK  Y  H  S    ++ L+DVG+G
Sbjct:    76 DTLLQWNQKMNLTATKEADEVMERHIEDSLAILPPIKTCYNLH-SSDLFDHINLIDVGSG 134

Query:   132 AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFRE 191
             AGLPGLVLAIACPDW+VTLLES+NKRCVFLEH V++T L NV IVRGRAE+ G DV +RE
Sbjct:   135 AGLPGLVLAIACPDWRVTLLESINKRCVFLEHVVNVTGLTNVTIVRGRAESCGHDVMYRE 194

Query:   192 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC 251
             ++DVA+ARAVAEMR+LAEYCLPLVR+GGLFVAAKGHDP+EEV+N+E AV+L+G S+LQ+ 
Sbjct:   195 KFDVAIARAVAEMRVLAEYCLPLVRIGGLFVAAKGHDPKEEVQNAENAVRLLGGSILQIS 254

Query:   252 SVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
              V+S SP+GQRT VVC K   TP+KYPR+ GTPAK+PL
Sbjct:   255 PVDSHSPYGQRTTVVCRKDHSTPQKYPREAGTPAKLPL 292

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

UNIPROTKB|Q81JH4 rsmG "Ribosomal RNA small subunit methyltransferase G" [Bacillus anthracis (taxid:1392)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 98/234 (41%), Positives = 140/234 (59%)

Query:    58 TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
             TL++RQ EQ  +Y + L++WN KMNLTA+ +  EV  +H  DS+            + D 
Sbjct:    16 TLSSRQLEQFEIYFETLVEWNEKMNLTAITEKEEVYLKHFFDSITA--------AFYYDF 67

Query:   118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
             S      + DVG GAG P + L I  P  KVT+++S+ KR  FL H     +L +V    
Sbjct:    68 S--KPFSICDVGAGAGFPSIPLKICFPHLKVTIVDSLQKRINFLNHLAQKLELSDVAFCH 125

Query:   178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
              RAET GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N +
Sbjct:   126 DRAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGK 185

Query:   238 RAVQLMGASLLQLCSVESQSPF--GQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
              A++++G  L ++ +   Q PF   +R  ++  K R+TPKKYPR PGTP K+P+
Sbjct:   186 YALEVLGGDLKEMSTF--QLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_5732 BA_5732 "glucose-inhibited division protein B" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 98/234 (41%), Positives = 140/234 (59%)

Query:    58 TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
             TL++RQ EQ  +Y + L++WN KMNLTA+ +  EV  +H  DS+            + D 
Sbjct:    16 TLSSRQLEQFEIYFETLVEWNEKMNLTAITEKEEVYLKHFFDSITA--------AFYYDF 67

Query:   118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
             S      + DVG GAG P + L I  P  KVT+++S+ KR  FL H     +L +V    
Sbjct:    68 S--KPFSICDVGAGAGFPSIPLKICFPHLKVTIVDSLQKRINFLNHLAQKLELSDVAFCH 125

Query:   178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
              RAET GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N +
Sbjct:   126 DRAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGK 185

Query:   238 RAVQLMGASLLQLCSVESQSPF--GQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
              A++++G  L ++ +   Q PF   +R  ++  K R+TPKKYPR PGTP K+P+
Sbjct:   186 YALEVLGGDLKEMSTF--QLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AG54 rsmG "Ribosomal RNA small subunit methyltransferase G" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 96/230 (41%), Positives = 133/230 (57%)

Query:    63 QQEQIHL---YVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSC 119
             ++E+I L   Y   L+  N K NLTAV   +EV+ +H  DS A++  I    T       
Sbjct:    17 EKEKIQLFERYYRLLISENEKYNLTAVTGEDEVIVKHFLDSTAVL--IYRDLT------- 67

Query:   120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR 179
               +L  VD+GTGAG PG+ L I  P  K+ LL+S+ KRC+FLE  V    L NV ++  R
Sbjct:    68 --DLNAVDIGTGAGFPGIPLKIMVPGLKLLLLDSLKKRCLFLERVVRELNLTNVTVINER 125

Query:   180 AETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERA 239
             AE LG+   FRE +DV  +RAVAE+R+L E+  PL+R+GG  +  KG    EE+K +E+A
Sbjct:   126 AENLGRQKPFRELFDVTFSRAVAEVRVLLEFHAPLLRLGGETILFKGPGVDEELKKAEKA 185

Query:   240 VQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
              + +G  L  +        FG+R+ VV  K + TP+ YPR PG P K PL
Sbjct:   186 AKQLGMELKDVYYYRLPGNFGERSLVVYKKLQNTPENYPRRPGIPEKRPL 235

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0008 CHY_0008 "glucose-inhibited division protein B" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 96/230 (41%), Positives = 133/230 (57%)

Query:    63 QQEQIHL---YVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSC 119
             ++E+I L   Y   L+  N K NLTAV   +EV+ +H  DS A++  I    T       
Sbjct:    17 EKEKIQLFERYYRLLISENEKYNLTAVTGEDEVIVKHFLDSTAVL--IYRDLT------- 67

Query:   120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR 179
               +L  VD+GTGAG PG+ L I  P  K+ LL+S+ KRC+FLE  V    L NV ++  R
Sbjct:    68 --DLNAVDIGTGAGFPGIPLKIMVPGLKLLLLDSLKKRCLFLERVVRELNLTNVTVINER 125

Query:   180 AETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERA 239
             AE LG+   FRE +DV  +RAVAE+R+L E+  PL+R+GG  +  KG    EE+K +E+A
Sbjct:   126 AENLGRQKPFRELFDVTFSRAVAEVRVLLEFHAPLLRLGGETILFKGPGVDEELKKAEKA 185

Query:   240 VQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
              + +G  L  +        FG+R+ VV  K + TP+ YPR PG P K PL
Sbjct:   186 AKQLGMELKDVYYYRLPGNFGERSLVVYKKLQNTPENYPRRPGIPEKRPL 235

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|Q71VW1 rsmG "Ribosomal RNA small subunit methyltransferase G" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 86/231 (37%), Positives = 133/231 (57%)

Query:    59 LNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSS 118
             L+  Q +Q H Y + L++WN KMNLTA+ D  EV  +H  DS++    +   +T   D+ 
Sbjct:    17 LSDTQLKQFHDYFEMLVEWNEKMNLTAITDEKEVYLKHFYDSISAAFYV--DFTKF-DTI 73

Query:   119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG 178
             C       DVG GAG P L + I  P  +V++++S+ KR  FL+       L +V     
Sbjct:    74 C-------DVGAGAGFPSLPIKICFPHLEVSIVDSLKKRMTFLDALAEKLGLTDVHFYHD 126

Query:   179 RAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSER 238
             RAET G++ + RE+YD+  ARAVA M +L+E C+PLV+ GG F+  K    ++E++ +E+
Sbjct:   127 RAETFGQNKAHREKYDLVTARAVARMSVLSELCMPLVKKGGSFLVMKAAQAEQELQTAEK 186

Query:   239 AVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
             A++L G  + +  +        +R   V  K++ TP KYPR PGTP K+P+
Sbjct:   187 AIKLFGGKVEEHFAFSLPVEESERNIYVITKTKETPNKYPRKPGTPNKLPI 237

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q97QD4 rsmG "Ribosomal RNA small subunit methyltransferase G" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 88/233 (37%), Positives = 129/233 (55%)

Query:    59 LNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSS 118
             L+ +Q+EQ   Y + L++WN K+NLTA+ D  EV  +H  DS+A   PI           
Sbjct:    17 LSDQQKEQFERYFELLVEWNEKINLTAITDKEEVYLKHFYDSIA---PILQGLIP----- 68

Query:   119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG 178
              N  +KL+D+G GAG P L + I  P+  VT+++S+NKR  FL+       L  V    G
Sbjct:    69 -NETIKLLDIGAGAGFPSLPMKILYPELDVTIIDSLNKRINFLQLLAQELDLNGVHFYHG 127

Query:   179 RAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSER 238
             RAE   +D +FR QYD   ARAVA M++L+E  +P ++VGG  +A K  +  EE+  ++ 
Sbjct:   128 RAEDFAQDKNFRAQYDFVTARAVARMQVLSELTIPYLKVGGKLLALKASNAPEELLEAKN 187

Query:   239 AVQLMGASLLQLCS--VESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
             A+ L+ + +    S  + ++ P   R   V  K + TP KYPR  G P K PL
Sbjct:   188 ALNLLFSKVEDNLSYALPNRDP---RYITVVEKKKETPNKYPRKAGMPNKRPL 237

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|DET_0776 DET_0776 "methyltransferase GidB" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 83/233 (35%), Positives = 123/233 (52%)

Query:    58 TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAI-IPPIKNSYTSHCD 116
             +L++ Q EQ   Y   L+ +N ++NLTA+    ++  +H  DS ++ +  IK       D
Sbjct:    14 SLSSVQLEQFETYYRELVDYNSRVNLTAITGYEDIQLKHFLDSASLALAGIKG------D 67

Query:   117 SSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIV 176
                    KL+DVG+GAG PGL L I  P  K+ LLE+  K+  FL    +   L  V+I+
Sbjct:    68 E------KLLDVGSGAGFPGLPLKIIFPGMKLGLLEATQKKARFLSEITAKLGLTGVEII 121

Query:   177 RGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNS 236
               RAE   ++  +R++Y +  +RAVA+M  LAE  LP   VGG  VA K  D +EE+  +
Sbjct:   122 SQRAEDAAQNPLYRQKYTLVTSRAVADMATLAELTLPFCAVGGRVVAPKKGDIEEEMDRA 181

Query:   237 ERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
               A++ MG  + ++  V+       R  VV  K   T  +YPR  G PAK PL
Sbjct:   182 ASAIKKMGGRVSEIIKVDLPGLQDGRKLVVLEKISNTLSQYPRRAGMPAKNPL 234

GO:0008152 "metabolic process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|P0A6U5 rsmG "16S rRNA m7G527 methyltransferase" [Escherichia coli K-12 (taxid:83333)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 63/199 (31%), Positives = 103/199 (51%)

Query:    58 TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
             +L   Q+ Q+  YV+ L +WN+  NLT+V+D NE++ RHI DS+ + P ++         
Sbjct:    15 SLTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQGE------- 67

Query:   118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
                   + +DVGTG GLPG+ L+I  P+   TLL+S+ KR  FL       +L N++ V+
Sbjct:    68 ------RFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQ 121

Query:   178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
              R E    +  F    D  ++RA A +  +  +C  L    G F A KG  P++E+    
Sbjct:   122 SRVEEFPSEPPF----DGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP 177

Query:   238 RAVQLMGASLLQLCSVESQ 256
                Q+     LQ+ +++ +
Sbjct:   178 EEYQVESVVKLQVPALDGE 196

GO:0070476 "rRNA (guanine-N7)-methylation" evidence=IDA

GO:0070475 "rRNA base methylation" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA

GO:0070043 "rRNA (guanine-N7-)-methyltransferase activity" evidence=IDA

UNIPROTKB|P94614 rsmG "Ribosomal RNA small subunit methyltransferase G" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 56/174 (32%), Positives = 96/174 (55%)

Query:    64 QEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNL 123
             Q+ +  ++  L +WN+  NLTA+ ++  ++  H+ DSL+I+P +K               
Sbjct:    21 QQSMLAFLAFLQKWNQAYNLTAITEIKSMITHHLLDSLSILPYLKGD------------- 67

Query:   124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL 183
             K++DVG+GAG PG+ LA ACP+ K TL++S  K+  FL  A S  ++ NV I++ R  + 
Sbjct:    68 KILDVGSGAGFPGIPLAFACPEKKFTLIDSKAKKTAFLLQAASRFKITNVTIIQERVGSY 127

Query:   184 GKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
                  F    D    RA+  +R + E    L+R GG ++  KG  P++E++ ++
Sbjct:   128 QPGFYF----DTITCRALGSVREIMEQTNHLLRSGGQWLIMKGAYPEKELRGTD 177

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.170	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	0.691

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
PRK00107	187	PRK00107, gidB, 16S rRNA methyltransferase GidB; R	2e-73
COG0357	215	COG0357, GidB, Predicted S-adenosylmethionine-depe	7e-68
pfam02527	184	pfam02527, GidB, rRNA small subunit methyltransfer	3e-61
TIGR00138	181	TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-meth	1e-60
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	2e-05
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	8e-05
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	4e-04

>gnl|CDD|234637 PRK00107, gidB, 16S rRNA methyltransferase GidB; Reviewed

 Score =  222 bits (569), Expect = 2e-73
 Identities = 78/176 (44%), Positives = 112/176 (63%), Gaps = 16/176 (9%)

Query: 65  EQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLK 124
           EQ+  YV+ L++WN+K NLTA++D  E+ ERHI DSLAI P +                +
Sbjct: 1   EQLEAYVELLVKWNKKYNLTAIRDPEELWERHILDSLAIAPYLPG------------GER 48

Query: 125 LVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG 184
           ++DVG+GAG PG+ LAIA P+ KVTL++S+ K+  FL    +   L NV +V GRAE  G
Sbjct: 49  VLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG 108

Query: 185 KDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAV 240
           ++    E++DV  +RAVA +  L E CLPL++ GG F+A KG DP+EE+    +A+
Sbjct: 109 QE----EKFDVVTSRAVASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKAL 160

Length = 187

>gnl|CDD|223434 COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

 Score =  209 bits (535), Expect = 7e-68
 Identities = 84/210 (40%), Positives = 129/210 (61%), Gaps = 14/210 (6%)

Query: 63  QQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSN 122
           Q E++  YV+ LL+WN+  NLTA++D  E+ +RHI DSL ++P +               
Sbjct: 20  QLEKLEAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGK-----------A 68

Query: 123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET 182
            +++D+G+GAG PG+ LAIA PD KVTLLES+ K+  FL        L NV+IV GRAE 
Sbjct: 69  KRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEE 128

Query: 183 LGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQL 242
            G++   ++QYDV  +RAVA + +L E CLPL++VGG F+A KG   ++E+  +E+A+  
Sbjct: 129 FGQE---KKQYDVVTSRAVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILP 185

Query: 243 MGASLLQLCSVESQSPFGQRTAVVCLKSRR 272
           +G  + ++ S+      G+R  V+  K + 
Sbjct: 186 LGGQVEKVFSLTVPELDGERHLVIIRKRKI 215

Length = 215

>gnl|CDD|217086 pfam02527, GidB, rRNA small subunit methyltransferase G

 Score =  191 bits (488), Expect = 3e-61
 Identities = 80/196 (40%), Positives = 118/196 (60%), Gaps = 15/196 (7%)

Query: 63  QQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSN 122
           Q E++ LYV  LL+WN++ NLT++ + NE++ERH+ DSL ++  + N             
Sbjct: 1   QLEKLELYVQLLLEWNKRYNLTSITEPNELLERHLLDSLVVLEYLDNI-----------R 49

Query: 123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET 182
           +K+ DVG+GAG PG+ LAIA PD K+TLLES+ K+  FLE       L NV IV  RAE 
Sbjct: 50  IKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEE 109

Query: 183 LGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQL 242
                   EQYDV  +RAVA +  L E+ LPL++ GG F+A KG   ++E++  ++A Q 
Sbjct: 110 YQH----EEQYDVITSRAVASLNELTEWALPLLKPGGYFLAYKGKQAEDEIEELDKACQK 165

Query: 243 MGASLLQLCSVESQSP 258
           +G  +L + S+ +   
Sbjct: 166 LGVEVLFVPSLGAGDR 181

This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA. Length = 184

>gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase GidB

 Score =  190 bits (484), Expect = 1e-60
 Identities = 70/182 (38%), Positives = 111/182 (60%), Gaps = 17/182 (9%)

Query: 69  LYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDV 128
            Y++ L +WN++ NLT++K   E+ ERHI DSLA++  +                +++D+
Sbjct: 3   AYLELLQKWNKRFNLTSIKTPEEIWERHILDSLALLEYLDG-------------KRVIDI 49

Query: 129 GTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS 188
           G+GAG PG+ LAIA P+ K+TLLES +K+  FL    +   L NV+IV GRAE    D  
Sbjct: 50  GSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAE----DFQ 105

Query: 189 FREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL 248
             EQ+D+  +RA+A + +L E  L L++VGG F+A KG    +E++ ++R  Q++G   L
Sbjct: 106 HEEQFDIITSRALASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPL 165

Query: 249 QL 250
           ++
Sbjct: 166 EV 167

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA [Protein synthesis, tRNA and rRNA base modification]. Length = 181

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 120 NSNLKLVDVGTGAGLPGLVLA-IACPDWKVTLLESMNKRCVFLEHAVSLTQLL---NVQI 175
            S +K++D+G G G    +LA    P  +V  ++ +++  +  E A    + L   NV+ 
Sbjct: 2   KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGID-ISEEAI--EKAKENAKKLGYENVEF 58

Query: 176 VRGRAETLGKDVSFREQYDVAVARAV 201
           ++G  E L +       +DV ++  V
Sbjct: 59  IQGDIEELPQLQLEDNSFDVVISNEV 84

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 16/108 (14%)

Query: 124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL---NVQIVRGRA 180
           +++D+G G G   L LA   P  +VT ++ ++   V LE A      L   NV++++G A
Sbjct: 1   RVLDLGCGTGALALALASG-PGARVTGVD-ISP--VALELARKAAAALLADNVEVLKGDA 56

Query: 181 ETLGKDVSFREQYDVAVARAVAE------MRILAEYCLPLVRVGGLFV 222
           E L  +    E +DV ++            R L E    L++ GG+ V
Sbjct: 57  EELPPEAD--ESFDVIISDPPLHHLVEDLARFLEE-ARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA 180
              +++D+G G G   + LA   P  +VT ++   +          L     +  V+G A
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60

Query: 181 ETLGKDVSFREQYDVAVARAVAEMRI-LAEYCLPLVRVGGLFVA 223
                 +   E +D           + L +    L++ GG  V 
Sbjct: 61  P---DALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.97
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	99.97
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	99.97
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.96
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.92
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.92
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.91
COG2890	280	HemK Methylase of polypeptide chain release factor	99.91
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.88
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.87
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.87
KOG2904	328	consensus Predicted methyltransferase [General fun	99.87
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.86
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.86
COG4123	248	Predicted O-methyltransferase [General function pr	99.85
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.84
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.83
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.81
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.8
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.78
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.78
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.77
PLN02672	1082	methionine S-methyltransferase	99.76
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.76
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.75
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.75
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.75
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.74
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.72
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.72
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.71
PRK04266	226	fibrillarin; Provisional	99.7
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.7
PLN02336	475	phosphoethanolamine N-methyltransferase	99.7
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.7
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.69
PRK07402	196	precorrin-6B methylase; Provisional	99.69
PLN02244	340	tocopherol O-methyltransferase	99.69
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.69
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.68
PRK11207	197	tellurite resistance protein TehB; Provisional	99.67
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.67
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.67
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.67
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.67
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.66
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.66
PLN02490	340	MPBQ/MSBQ methyltransferase	99.65
PRK14968	188	putative methyltransferase; Provisional	99.64
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.63
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.63
PLN03075	296	nicotianamine synthase; Provisional	99.63
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.63
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.63
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.62
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.62
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.62
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.61
PRK14967	223	putative methyltransferase; Provisional	99.61
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.61
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.61
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.61
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.6
PTZ00146	293	fibrillarin; Provisional	99.6
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.6
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.6
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.6
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.59
PRK12335	287	tellurite resistance protein TehB; Provisional	99.59
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.59
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.58
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.57
PRK05785	226	hypothetical protein; Provisional	99.57
PRK08317	241	hypothetical protein; Provisional	99.57
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.56
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.56
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.56
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.55
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.55
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.55
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.55
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.53
PRK06922	677	hypothetical protein; Provisional	99.53
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.51
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.51
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.5
PRK04457	262	spermidine synthase; Provisional	99.5
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.49
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.49
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.48
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.48
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.47
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.47
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.47
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.47
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.47
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.47
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.47
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.47
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.47
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.46
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.46
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.46
TIGR00438	188	rrmJ cell division protein FtsJ.	99.46
PRK00811	283	spermidine synthase; Provisional	99.45
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.45
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.45
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.45
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.44
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.44
KOG1271	227	consensus Methyltransferases [General function pre	99.44
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.43
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.43
PHA03411	279	putative methyltransferase; Provisional	99.43
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.42
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.42
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.41
KOG4300	252	consensus Predicted methyltransferase [General fun	99.41
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.4
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.4
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.39
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.39
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.38
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.38
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.38
PHA03412	241	putative methyltransferase; Provisional	99.36
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.36
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.36
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.36
COG4122	219	Predicted O-methyltransferase [General function pr	99.36
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.34
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.34
PRK03612	521	spermidine synthase; Provisional	99.33
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.33
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.33
PLN02476	278	O-methyltransferase	99.32
PRK01581	374	speE spermidine synthase; Validated	99.32
PLN02366	308	spermidine synthase	99.31
PLN02336	475	phosphoethanolamine N-methyltransferase	99.31
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.3
PRK06202	232	hypothetical protein; Provisional	99.29
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.28
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.27
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.26
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.23
TIGR03438	301	probable methyltransferase. This model represents	99.22
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.22
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.21
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.2
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.2
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.18
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.18
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.16
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.14
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.12
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.11
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.11
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.1
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.08
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.07
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.05
PLN02823	336	spermine synthase	99.04
KOG2899	288	consensus Predicted methyltransferase [General fun	99.03
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.03
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.03
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.02
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.02
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.01
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.0
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.0
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.98
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.97
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.95
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.95
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.94
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.94
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.94
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.93
COG2520	341	Predicted methyltransferase [General function pred	98.93
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.93
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.93
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.92
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.92
KOG3010	261	consensus Methyltransferase [General function pred	98.92
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.92
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.89
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.88
COG2521	287	Predicted archaeal methyltransferase [General func	98.86
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.83
KOG2361	264	consensus Predicted methyltransferase [General fun	98.81
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.81
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.8
COG4076	252	Predicted RNA methylase [General function predicti	98.8
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.79
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.79
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.77
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.77
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.74
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.74
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.73
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.69
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.68
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.67
PRK04148	134	hypothetical protein; Provisional	98.64
PRK00536	262	speE spermidine synthase; Provisional	98.64
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.61
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.59
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.59
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.56
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.51
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.49
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.49
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.48
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.47
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.44
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.41
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.4
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.38
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.38
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.37
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.36
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.34
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.34
COG3897	218	Predicted methyltransferase [General function pred	98.32
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.32
PF13679	141	Methyltransf_32: Methyltransferase domain	98.28
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.26
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.25
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.25
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.24
KOG3201	201	consensus Uncharacterized conserved protein [Funct	98.23
KOG2940	325	consensus Predicted methyltransferase [General fun	98.22
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.2
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.19
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.19
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.12
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.1
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.07
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.06
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.06
KOG3115	249	consensus Methyltransferase-like protein [General	98.06
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.01
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.99
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.96
KOG2730	263	consensus Methylase [General function prediction o	97.95
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.9
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.9
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.88
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.85
PRK10742	250	putative methyltransferase; Provisional	97.82
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.81
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.8
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.77
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.73
COG1568	354	Predicted methyltransferases [General function pre	97.72
KOG1331	293	consensus Predicted methyltransferase [General fun	97.58
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.55
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.48
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.46
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.41
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.38
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.29
COG4798	238	Predicted methyltransferase [General function pred	97.26
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.26
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.23
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	97.16
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.12
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.1
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	97.08
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.05
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.99
COG0286	489	HsdM Type I restriction-modification system methyl	96.99
PHA01634	156	hypothetical protein	96.98
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.79
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.79
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.79
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.61
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	96.56
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.33
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.28
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.06
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.05
KOG2920	282	consensus Predicted methyltransferase [General fun	96.05
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.03
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.84
KOG4058	199	consensus Uncharacterized conserved protein [Funct	95.69
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	95.58
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.54
KOG2078	495	consensus tRNA modification enzyme [RNA processing	95.35
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.28
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.08
KOG2912	419	consensus Predicted DNA methylase [Function unknow	95.06
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	95.02
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.0
KOG1227	351	consensus Putative methyltransferase [General func	94.97
KOG2671	421	consensus Putative RNA methylase [Replication, rec	94.89
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.82
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	94.68
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	94.62
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.49
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	94.42
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.38
PRK13699	227	putative methylase; Provisional	94.27
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	94.14
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.1
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.09
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	94.04
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	93.91
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.84
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	93.77
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	93.6
PRK11524	284	putative methyltransferase; Provisional	93.6
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	93.48
KOG2352	482	consensus Predicted spermine/spermidine synthase [	93.42
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	93.0
PRK11524	284	putative methyltransferase; Provisional	92.91
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	92.53
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.46
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	92.37
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	92.28
PRK13699	227	putative methylase; Provisional	91.99
COG2933	358	Predicted SAM-dependent methyltransferase [General	91.68
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.64
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	91.6
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	91.34
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.26
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	91.2
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	90.96
PRK10458	467	DNA cytosine methylase; Provisional	90.52
PRK07806	248	short chain dehydrogenase; Provisional	90.22
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	90.16
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	89.93
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	89.87
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	89.83
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	89.73
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	89.58
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	89.56
PTZ00357	1072	methyltransferase; Provisional	89.46
PLN02827	378	Alcohol dehydrogenase-like	89.42
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	88.99
PRK06940	275	short chain dehydrogenase; Provisional	88.87
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	88.8
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	88.63
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	88.51
KOG3924	419	consensus Putative protein methyltransferase invol	88.38
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	88.33
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	88.13
PRK08703	239	short chain dehydrogenase; Provisional	87.97
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	87.83
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	87.62
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	87.45
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	87.42
PLN02740	381	Alcohol dehydrogenase-like	87.41
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	87.36
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	87.3
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	87.05
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	86.94
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	86.53
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	86.5
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	86.49
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	85.89
PLN03209	576	translocon at the inner envelope of chloroplast su	85.86
PRK07102	243	short chain dehydrogenase; Provisional	85.85
PRK08324	681	short chain dehydrogenase; Validated	85.76
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	85.71
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.52
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	85.5
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	85.43
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	85.34
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	85.32
PRK12939	250	short chain dehydrogenase; Provisional	85.26
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	85.25
PRK06701	290	short chain dehydrogenase; Provisional	85.07
TIGR00497	501	hsdM type I restriction system adenine methylase (	85.05
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	84.85
KOG2360	413	consensus Proliferation-associated nucleolar prote	84.79
PRK07454	241	short chain dehydrogenase; Provisional	84.78
PRK07904	253	short chain dehydrogenase; Provisional	84.45
PRK09291	257	short chain dehydrogenase; Provisional	84.03
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	84.0
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	83.9
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	83.71
PRK07326	237	short chain dehydrogenase; Provisional	83.64
COG2961	279	ComJ Protein involved in catabolism of external DN	83.62
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	83.52
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	83.45
PRK08339	263	short chain dehydrogenase; Provisional	83.39
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	83.38
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	83.19
COG0673	342	MviM Predicted dehydrogenases and related proteins	83.09
TIGR00853	95	pts-lac PTS system, lactose/cellobiose family IIB	82.83
PRK05866	293	short chain dehydrogenase; Provisional	82.68
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.66
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	82.64
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	82.5
PRK06139	330	short chain dehydrogenase; Provisional	82.5
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	82.47
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	82.46
PRK06949	258	short chain dehydrogenase; Provisional	82.25
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	82.1
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	82.06
KOG2013	603	consensus SMT3/SUMO-activating complex, catalytic	82.06
PRK10669	558	putative cation:proton antiport protein; Provision	82.02
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	81.84
PRK06124	256	gluconate 5-dehydrogenase; Provisional	81.83
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	81.5
PRK08213	259	gluconate 5-dehydrogenase; Provisional	81.14
PRK07985	294	oxidoreductase; Provisional	80.98
COG4301	321	Uncharacterized conserved protein [Function unknow	80.87
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	80.87
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	80.76
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.66
PRK07523	255	gluconate 5-dehydrogenase; Provisional	80.66
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	80.55
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	80.54
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	80.37
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	80.35
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	80.35
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	80.1
PRK05599	246	hypothetical protein; Provisional	80.07
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	80.03

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.97  E-value=2.1e-30  Score=220.67  Aligned_cols=186  Identities=44%  Similarity=0.739  Sum_probs=168.6

Q ss_pred             HHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHHHHHHHCCC
Q 022962           66 QIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPD  145 (289)
Q Consensus        66 ~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l~la~~~p~  145 (289)
                      +|+.|..++.+||+.+|+++.+..++.|.+|+.|++.+....+            ++.+|||+|||+|..++.+|...|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~l~~~l~------------~g~~VLDiGcGtG~~al~la~~~~~   69 (187)
T PRK00107          2 QLEAYVELLVKWNKKYNLTAIRDPEELWERHILDSLAIAPYLP------------GGERVLDVGSGAGFPGIPLAIARPE   69 (187)
T ss_pred             hHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHhhcC------------CCCeEEEEcCCCCHHHHHHHHHCCC
Confidence            5889999999999999999999999999999999987765443            3789999999999999999988889


Q ss_pred             CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcccHHHHHHHHccccccCeEEEEEE
Q 022962          146 WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       146 ~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .+|+|+|+|+++++.|+++++.+++++++++++|++++..    .++||+|++++..+++.+++.+.+.|+|||++++..
T Consensus        70 ~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----~~~fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107         70 LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----EEKFDVVTSRAVASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC----CCCccEEEEccccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            9999999999999999999999999889999999988654    368999999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962          226 GHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  270 (289)
Q Consensus       226 g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~  270 (289)
                      +.....++.++.+   ..|+.+.....++.|..+|++++++++|+
T Consensus       146 ~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (187)
T PRK00107        146 GRDPEEEIAELPK---ALGGKVEEVIELTLPGLDGERHLVIIRKK  187 (187)
T ss_pred             CCChHHHHHHHHH---hcCceEeeeEEEecCCCCCcEEEEEEecC
Confidence            9888877766554   67999999888888999999999999974

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=99.97  E-value=2e-30  Score=219.73  Aligned_cols=184  Identities=43%  Similarity=0.715  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHHHHHHH
Q 022962           63 QQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIA  142 (289)
Q Consensus        63 ~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l~la~~  142 (289)
                      |.+++..|.+.+.+||+++||+++++.+++|.+|++||+.+.+.++..           +.+++|||||.|++|+.+|..
T Consensus         1 q~~~l~~y~~lL~~~N~~~NLt~~~~~~~~~~~Hi~DSL~~~~~~~~~-----------~~~~lDiGSGaGfPGipLaI~   69 (184)
T PF02527_consen    1 QIEKLEQYLELLLEWNKKINLTSIRDPEEIWERHILDSLALLPFLPDF-----------GKKVLDIGSGAGFPGIPLAIA   69 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSS-S--SHHHHHHHHHHHHHGGGGCS-CC-----------CSEEEEETSTTTTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCceeeeccCCCHHHHHHHHHHHHHHhhhhhccC-----------CceEEecCCCCCChhHHHHHh
Confidence            678999999999999999999999999999999999999998877641           238999999999999999999


Q ss_pred             CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcccHHHHHHHHccccccCeEEE
Q 022962          143 CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       143 ~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~  222 (289)
                      +|+.+|+.+|.+.+.+++.++.++.++++|++++++++++.    ....+||+|+|+|++++..+++.+.+++++||.++
T Consensus        70 ~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~----~~~~~fd~v~aRAv~~l~~l~~~~~~~l~~~G~~l  145 (184)
T PF02527_consen   70 RPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP----EYRESFDVVTARAVAPLDKLLELARPLLKPGGRLL  145 (184)
T ss_dssp             -TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT----TTTT-EEEEEEESSSSHHHHHHHHGGGEEEEEEEE
T ss_pred             CCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc----ccCCCccEEEeehhcCHHHHHHHHHHhcCCCCEEE
Confidence            99999999999999999999999999999999999999992    23478999999999999999999999999999999


Q ss_pred             EEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEE
Q 022962          223 AAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAV  265 (289)
Q Consensus       223 ~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv  265 (289)
                      +++|....+|+.++.+.++..+.+...+..+..    ..|++|
T Consensus       146 ~~KG~~~~~El~~~~~~~~~~~~~~~~v~~~~~----~~r~l~  184 (184)
T PF02527_consen  146 AYKGPDAEEELEEAKKAWKKLGLKVLSVPEFEL----PERHLV  184 (184)
T ss_dssp             EEESS--HHHHHTHHHHHHCCCEEEEEEEEEE-----TEEEEE
T ss_pred             EEcCCChHHHHHHHHhHHHHhCCEEeeeccccC----CCCCCC
Confidence            999999999999999999999999988887742    246664

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=99.97  E-value=1.6e-30  Score=223.86  Aligned_cols=203  Identities=41%  Similarity=0.691  Sum_probs=184.1

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCC
Q 022962           54 SHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAG  133 (289)
Q Consensus        54 ~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G  133 (289)
                      .+..++++++.+++..|.+++.+||+.+||+++++.+++|.+|++||+.+......           .+.+++|||+|.|
T Consensus        11 ~~~~~~~~~~~~~l~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~-----------~~~~~~DIGSGaG   79 (215)
T COG0357          11 GLGLSVTEEQLEKLEAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDG-----------KAKRVLDIGSGAG   79 (215)
T ss_pred             hccCCccHHHHHHHHHHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccc-----------cCCEEEEeCCCCC
Confidence            45567888999999999999999999999999999999999999999998765431           0579999999999


Q ss_pred             hHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCC-ceEEEEcCcccHHHHHHHHc
Q 022962          134 LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQ-YDVAVARAVAEMRILAEYCL  212 (289)
Q Consensus       134 ~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~-fD~V~sn~~~~~~~ll~~~~  212 (289)
                      ++|+.+|..+|+.+||.+|...+.+.+++....+++++|++++++++|++...    .. ||+|+|+|++++..+.+.+.
T Consensus        80 fPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----~~~~D~vtsRAva~L~~l~e~~~  155 (215)
T COG0357          80 FPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----KKQYDVVTSRAVASLNVLLELCL  155 (215)
T ss_pred             CchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----cccCcEEEeehccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998753    23 99999999999999999999


Q ss_pred             cccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecC
Q 022962          213 PLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR  271 (289)
Q Consensus       213 ~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~  271 (289)
                      .++|+||.++++++....++..+...+....|+....+..+..|...++|+++++++.+
T Consensus       156 pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l~ii~~~k  214 (215)
T COG0357         156 PLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPELDGERHLVIIRKRK  214 (215)
T ss_pred             HhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCCCCceEEEEEeccC
Confidence            99999999988888777788888888888999999999888888888899999999864

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.96  E-value=6.6e-28  Score=204.62  Aligned_cols=179  Identities=40%  Similarity=0.685  Sum_probs=157.8

Q ss_pred             HHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCE
Q 022962           68 HLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWK  147 (289)
Q Consensus        68 ~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~  147 (289)
                      ..|...+++||+++|+++.+...++|.+++.+++.....+             ++.+|||+|||+|.+++.+|...++.+
T Consensus         2 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~-------------~~~~vLDiGcGtG~~s~~la~~~~~~~   68 (181)
T TIGR00138         2 KAYLELLQKWNKRFNLTSLKTPEEIWERHILDSLKLLEYL-------------DGKKVIDIGSGAGFPGIPLAIARPELK   68 (181)
T ss_pred             HHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHhc-------------CCCeEEEecCCCCccHHHHHHHCCCCe
Confidence            5678889999999999999999999999999987654332             278999999999999999998888899


Q ss_pred             EEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcccHHHHHHHHccccccCeEEEEEEcC
Q 022962          148 VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       148 V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      |+|+|+|+.+++.+++++++++++|++++++|++++..    .++||+|+|+++.+++.+++.+.++|+|||.+++..+.
T Consensus        69 V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~----~~~fD~I~s~~~~~~~~~~~~~~~~LkpgG~lvi~~~~  144 (181)
T TIGR00138        69 LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH----EEQFDVITSRALASLNVLLELTLNLLKVGGYFLAYKGK  144 (181)
T ss_pred             EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc----cCCccEEEehhhhCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            99999999999999999999998889999999998642    36899999999888899999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEE
Q 022962          228 DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVC  267 (289)
Q Consensus       228 ~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~  267 (289)
                      ....++..+.+.+...|++.++..++..|    .|+.+++
T Consensus       145 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~----~~~~~~~  180 (181)
T TIGR00138       145 KYLDEIEEAKRKCQVLGVEPLEVPPLTGP----DRHLVIL  180 (181)
T ss_pred             CcHHHHHHHHHhhhhcCceEeeccccCCC----ceEEEEE
Confidence            89999888888777899999998876544    5777665

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.92  E-value=2.5e-24  Score=201.40  Aligned_cols=205  Identities=16%  Similarity=0.140  Sum_probs=161.1

Q ss_pred             cchhhhhhchhhh------hhhccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccc
Q 022962           38 HRTRAKTLTTTRI------VNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSY  111 (289)
Q Consensus        38 ~r~~~~~l~~~~~------~~~~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~  111 (289)
                      .+.+++.|..+..      .......++++++.+++..+.+++.   ++.|++|+.+..+|++..+..+...++|+++|+
T Consensus       163 p~~dA~~LL~~~l~~~r~~l~~~~~~~l~~~~~~~~~~~v~RR~---~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE  239 (423)
T PRK14966        163 PKNEARMLLQYASEYTRVQLLTRGGEEMPDEVRQRADRLAQRRL---NGEPVAYILGVREFYGRRFAVNPNVLIPRPETE  239 (423)
T ss_pred             hHHHHHHHHHHHHCcCHHHHhhCCcccCCHHHHHHHHHHHHHHH---cCCCceeEeeeeeecCcEEEeCCCccCCCccHH
Confidence            3445555555541      1223446788887777777777666   899999999999999999999999999999998


Q ss_pred             cc--ccCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC
Q 022962          112 TS--HCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF  189 (289)
Q Consensus       112 ~~--~~~~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~  189 (289)
                      .+  .....++++.+|||+|||+|.+++.++...|+.+|+|+|+|+.+++.|++|++.++. +++++++|+.+....  .
T Consensus       240 ~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~--~  316 (423)
T PRK14966        240 HLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMP--S  316 (423)
T ss_pred             HHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccc--c
Confidence            65  222334456799999999999999999888999999999999999999999998886 799999998654221  1


Q ss_pred             CCCceEEEEcCc-----------------------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHH
Q 022962          190 REQYDVAVARAV-----------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAV  240 (289)
Q Consensus       190 ~~~fD~V~sn~~-----------------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l  240 (289)
                      .++||+|+||..                             ..++.+++.+.+.|+|||.++++.|.++.+++.+++   
T Consensus       317 ~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll---  393 (423)
T PRK14966        317 EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVL---  393 (423)
T ss_pred             CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHH---
Confidence            257999999930                             125688889999999999999999998888876654   


Q ss_pred             HHhCCeEeEEe
Q 022962          241 QLMGASLLQLC  251 (289)
Q Consensus       241 ~~~g~~~~~~~  251 (289)
                      ++.||..+++.
T Consensus       394 ~~~Gf~~v~v~  404 (423)
T PRK14966        394 AENGFSGVETL  404 (423)
T ss_pred             HHCCCcEEEEE
Confidence            47888765553

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.92  E-value=9.3e-25  Score=211.89  Aligned_cols=215  Identities=15%  Similarity=0.201  Sum_probs=168.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccCCC-------------
Q 022962           54 SHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCDSS-------------  118 (289)
Q Consensus        54 ~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~~~-------------  118 (289)
                      ....++++++.+.+..+.+++.   ++.|++|+.+..+||+..|..+..+++|+|+||++  .+...             
T Consensus        46 ~~~~~l~~~~~~~~~~~~~rr~---~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~  122 (506)
T PRK01544         46 NLDEQLNEAEIEAFEKLLERRL---KHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQL  122 (506)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHH---cCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhcccccccccc
Confidence            3456788888777777777666   89999999999999999999999999999999965  11100             


Q ss_pred             -------------CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccC
Q 022962          119 -------------CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLG  184 (289)
Q Consensus       119 -------------~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~  184 (289)
                                   ..++.+|||+|||+|++++.++...|+.+|+|+|+|+.+++.|++|++.+++. +++++++|+.+..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~  202 (506)
T PRK01544        123 NPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI  202 (506)
T ss_pred             ccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC
Confidence                         11246899999999999999998889999999999999999999999998875 6999999986532


Q ss_pred             CCCcCCCCceEEEEcC------------------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHH
Q 022962          185 KDVSFREQYDVAVARA------------------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVK  234 (289)
Q Consensus       185 ~~~~~~~~fD~V~sn~------------------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~  234 (289)
                      .    .++||+|+||.                              ...+..+++.+.++|+|||.++++.|.++.+.+.
T Consensus       203 ~----~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~  278 (506)
T PRK01544        203 E----KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVT  278 (506)
T ss_pred             c----CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHH
Confidence            1    25799999982                              0135678889999999999999999998888776


Q ss_pred             HHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecCCCCCCCCCCCCC
Q 022962          235 NSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGT  283 (289)
Q Consensus       235 ~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~~~p~~~pr~~g~  283 (289)
                      .++   ...||..+++.     +...++..++.--.....+.|.|+.|.
T Consensus       279 ~~~---~~~g~~~~~~~-----~D~~g~~R~v~~~~~~~~rs~~rr~g~  319 (506)
T PRK01544        279 QIF---LDHGYNIESVY-----KDLQGHSRVILISPINLNRSYARRIGK  319 (506)
T ss_pred             HHH---HhcCCCceEEE-----ecCCCCceEEEeccccCCcceeccCCC
Confidence            654   46788766553     233444444444445666799999884

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.91  E-value=1.7e-23  Score=189.67  Aligned_cols=188  Identities=18%  Similarity=0.185  Sum_probs=152.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccCC---CCCCCCeEEEE
Q 022962           54 SHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCDS---SCNSNLKLVDV  128 (289)
Q Consensus        54 ~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~~---~~~~~~~VLDi  128 (289)
                      ....++++++..++..+.+++.   ++.|++|+.+..+||+..|..+..++.|+++|+.+  +...   ...+..+|||+
T Consensus        45 ~~~~~l~~~~~~~~~~~~~~r~---~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDl  121 (284)
T TIGR00536        45 FLTEELTPDEKERIFRLVLRRV---KGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDL  121 (284)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHH---cCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEE
Confidence            3456788888888888888887   66999999999999999999999999999999854  2111   11222689999


Q ss_pred             cCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcC-------
Q 022962          129 GTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA-------  200 (289)
Q Consensus       129 GcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~-------  200 (289)
                      |||+|.+++.++...++.+|+|+|+|+++++.|++|++.+++.+ ++++++|+.+...    .++||+|+||.       
T Consensus       122 G~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~----~~~fDlIvsNPPyi~~~~  197 (284)
T TIGR00536       122 GTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA----GQKIDIIVSNPPYIDEED  197 (284)
T ss_pred             eccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc----CCCccEEEECCCCCCcch
Confidence            99999999999998888999999999999999999999999864 9999999876321    24799999982       


Q ss_pred             ----------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          201 ----------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       201 ----------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                                            ...++.+++.+.++|+|||+++++.|..+.+.+..+...  ..||..+++
T Consensus       198 ~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~--~~~~~~~~~  267 (284)
T TIGR00536       198 LADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRI--KFTWYDVEN  267 (284)
T ss_pred             hhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHh--cCCCceeEE
Confidence                                  013678899999999999999999999888877664431  357754444

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=1.3e-23  Score=189.58  Aligned_cols=199  Identities=16%  Similarity=0.169  Sum_probs=155.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccCCCCCCCC-eEEEEcCC
Q 022962           55 HFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCDSSCNSNL-KLVDVGTG  131 (289)
Q Consensus        55 ~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~~~~~~~~-~VLDiGcG  131 (289)
                      ....+++++.+.+.....++   .++.|+.|+.+..+|++..+..+..+++|+++||++  +......... +|||||||
T Consensus        44 ~~~~~~~~~~~~~~~~~~rr---~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTG  120 (280)
T COG2890          44 PEAELSEEELERLRELLERR---AEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQLDKRILDLGTG  120 (280)
T ss_pred             cccccCHHHHHHHHHHHHHH---HCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhhcCCcEEEecCC
Confidence            34556777777666666655   599999999999999999999999999999999965  2111122222 79999999


Q ss_pred             CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-----------
Q 022962          132 AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-----------  200 (289)
Q Consensus       132 ~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-----------  200 (289)
                      ||++++.+|...|.++|+|+|+|+.+++.|++|++.+++.++.++++|+.+-.     .++||+|+||+           
T Consensus       121 SG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-----~~~fDlIVsNPPYip~~~~~~~  195 (280)
T COG2890         121 SGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL-----RGKFDLIVSNPPYIPAEDPELL  195 (280)
T ss_pred             hHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc-----CCceeEEEeCCCCCCCcccccC
Confidence            99999999999999999999999999999999999999877777777776532     35899999992           


Q ss_pred             ------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhC-CeEeEEeeeecCCCCCc
Q 022962          201 ------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG-ASLLQLCSVESQSPFGQ  261 (289)
Q Consensus       201 ------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g-~~~~~~~~~~~~~~~~~  261 (289)
                                        ..-+..++.++...|+|||.++++.|.++.+.+.++.   .+.| +..+...     +...+
T Consensus       196 ~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~---~~~~~~~~v~~~-----~d~~g  267 (280)
T COG2890         196 PEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALF---EDTGFFEIVETL-----KDLFG  267 (280)
T ss_pred             hhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHH---HhcCCceEEEEE-----ecCCC
Confidence                              1236889999999999999999999999988887654   4788 4444443     23444


Q ss_pred             eEEEEEEe
Q 022962          262 RTAVVCLK  269 (289)
Q Consensus       262 r~lv~~~k  269 (289)
                      +..++..+
T Consensus       268 ~~rv~~~~  275 (280)
T COG2890         268 RDRVVLAK  275 (280)
T ss_pred             ceEEEEEE
Confidence            44444443

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.88  E-value=6.2e-22  Score=179.36  Aligned_cols=186  Identities=13%  Similarity=0.142  Sum_probs=147.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccCC---CCCCCCeEEEEc
Q 022962           55 HFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCDS---SCNSNLKLVDVG  129 (289)
Q Consensus        55 ~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~~---~~~~~~~VLDiG  129 (289)
                      ...++++++.+++..+.+++.  +++.|++|+.+..+|++..+..+..++.|+++|+.+  ....   ...++.+|||+|
T Consensus        52 ~~~~~~~~~~~~~~~~~~rr~--~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG  129 (284)
T TIGR03533        52 LDARLTPSEKERILELIERRI--EERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLC  129 (284)
T ss_pred             ccCCCCHHHHHHHHHHHHHHH--hCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEe
Confidence            446778887777777766554  368999999999999999999999999999988743  1111   112357999999


Q ss_pred             CCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcCc-------
Q 022962          130 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARAV-------  201 (289)
Q Consensus       130 cG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~-------  201 (289)
                      ||+|.+++.++...|+.+|+|+|+|+.+++.|++|++.+++. +++++++|+.+...    +++||+|++|+.       
T Consensus       130 ~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~----~~~fD~Iv~NPPy~~~~~~  205 (284)
T TIGR03533       130 TGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP----GRKYDLIVSNPPYVDAEDM  205 (284)
T ss_pred             CchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC----CCCccEEEECCCCCCccch
Confidence            999999999999888899999999999999999999999985 69999999865321    257999999830       


Q ss_pred             ----------------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          202 ----------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       202 ----------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                                            ..++.+++.+.++|+|||+++++.|..+ +++.+   .+...||.....
T Consensus       206 ~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~---~~~~~~~~~~~~  272 (284)
T TIGR03533       206 ADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEE---AYPDVPFTWLEF  272 (284)
T ss_pred             hhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHH---HHHhCCCceeee
Confidence                                  1246789999999999999999999755 45544   455788876543

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.87  E-value=5.2e-21  Score=172.06  Aligned_cols=186  Identities=18%  Similarity=0.178  Sum_probs=147.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccC--CCCCCCCeEEEEcC
Q 022962           55 HFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCD--SSCNSNLKLVDVGT  130 (289)
Q Consensus        55 ~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~--~~~~~~~~VLDiGc  130 (289)
                      ...++++++.+++..+.+++   .++.|++++.+..+||...+..+..++.|+++|+.+  ...  ....++.+|||+||
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~---~~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~  117 (275)
T PRK09328         41 PEEELTPEELERFRALVARR---AAGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGT  117 (275)
T ss_pred             ccCCCCHHHHHHHHHHHHHH---HcCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcC
Confidence            34566777776666666665   499999999999999999999999999999998854  111  12335679999999


Q ss_pred             CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC----------
Q 022962          131 GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----------  200 (289)
Q Consensus       131 G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----------  200 (289)
                      |+|.+++.++...|..+|+|+|+|+.+++.++++++.....+++++++|+.+...    +++||+|++|.          
T Consensus       118 GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~----~~~fD~Iv~npPy~~~~~~~~  193 (275)
T PRK09328        118 GSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP----GGRFDLIVSNPPYIPEADIHL  193 (275)
T ss_pred             cHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC----CCceeEEEECCCcCCcchhhh
Confidence            9999999999998889999999999999999999883334579999999865321    36899999982          


Q ss_pred             --------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          201 --------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       201 --------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                                          ...+..+++.+.++|+|||+++++.|..+.+++..+   +...||..+++
T Consensus       194 ~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~---l~~~gf~~v~~  260 (275)
T PRK09328        194 LQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRAL---LAAAGFADVET  260 (275)
T ss_pred             CCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHH---HHhCCCceeEE
Confidence                                012467888999999999999999988777666554   45789874444

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.87  E-value=4.3e-21  Score=175.54  Aligned_cols=186  Identities=13%  Similarity=0.137  Sum_probs=145.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccCC-CCC--CCCeEEEEc
Q 022962           55 HFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCDS-SCN--SNLKLVDVG  129 (289)
Q Consensus        55 ~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~~-~~~--~~~~VLDiG  129 (289)
                      ...++++++..++..+.+++.  +++.|++|+.+..+|++..|..+..++.|+++++.+  .... .++  ...+|||+|
T Consensus        64 ~~~~l~~~~~~~~~~~~~rr~--~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG  141 (307)
T PRK11805         64 LDARLTPSEKARILELIERRI--NERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLC  141 (307)
T ss_pred             ccCCCCHHHHHHHHHHHHHHH--HCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEe
Confidence            345678887777777777664  358999999999999999998888999999988743  1111 111  126899999


Q ss_pred             CCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC--------
Q 022962          130 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA--------  200 (289)
Q Consensus       130 cG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--------  200 (289)
                      ||+|.+++.++..+|+.+|+|+|+|+.+++.|++|++.+++. +++++++|+.+...    +++||+|++|.        
T Consensus       142 ~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~----~~~fDlIvsNPPyi~~~~~  217 (307)
T PRK11805        142 TGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP----GRRYDLIVSNPPYVDAEDM  217 (307)
T ss_pred             chhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC----CCCccEEEECCCCCCccch
Confidence            999999999999889999999999999999999999999875 59999999865321    25799999983        


Q ss_pred             ---------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          201 ---------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       201 ---------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                                           ...+..+++.+.++|+|||.++++.|..+. ++..   .+...++...+.
T Consensus       218 ~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~-~~~~---~~~~~~~~~~~~  284 (307)
T PRK11805        218 ADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRV-HLEE---AYPDVPFTWLEF  284 (307)
T ss_pred             hhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCHH-HHHH---HHhhCCCEEEEe
Confidence                                 012468899999999999999999987643 3444   455677766544

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.87  E-value=4.8e-21  Score=167.24  Aligned_cols=191  Identities=14%  Similarity=0.135  Sum_probs=149.3

Q ss_pred             cchhhhhhccCCCCcccCCccchhhhhhchhhhhhhccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhh
Q 022962           18 FSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHI   97 (289)
Q Consensus        18 ~~~~~~~~h~~~~~~~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~   97 (289)
                      ++...+++|+...+++-++..               ....++...|.+-+..+...+.   +++|++|+.+.++|....+
T Consensus        56 ~~~~~i~shvL~~Kf~si~ds---------------~~~~pl~~~ql~~i~~~~~~R~---~r~PlQYIlg~~~F~~l~l  117 (328)
T KOG2904|consen   56 LSYKWIVSHVLPDKFWSIEDS---------------IVDDPLVILQLESIRWACLQRY---KRMPLQYILGSQPFGDLDL  117 (328)
T ss_pred             hhhHHHHHhhhhhhhccccch---------------hhccccchhHHHHHHHHHHHHH---hcCChhheeccCccCCceE
Confidence            566778888888776666551               3567777777666666666555   8999999999999999999


Q ss_pred             hhccccCCCCcccccc-------ccCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC
Q 022962           98 DDSLAIIPPIKNSYTS-------HCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL  170 (289)
Q Consensus        98 ~~sl~~~~~~~~~~~~-------~~~~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l  170 (289)
                      .....+++|+|+||..       +.....-++..+||+|||||++++.++...|.+.|+|||.|+.++..|.+|++++++
T Consensus       118 ~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l  197 (328)
T KOG2904|consen  118 VCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL  197 (328)
T ss_pred             EecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh
Confidence            9999999999999932       111122235689999999999999999888999999999999999999999999998


Q ss_pred             CC-EEEEecccccc--CCCCcCCCCceEEEEcC------------------------------cccHHHHHHHHcccccc
Q 022962          171 LN-VQIVRGRAETL--GKDVSFREQYDVAVARA------------------------------VAEMRILAEYCLPLVRV  217 (289)
Q Consensus       171 ~n-i~~~~~d~~~~--~~~~~~~~~fD~V~sn~------------------------------~~~~~~ll~~~~~~Lkp  217 (289)
                      .+ +.+++.+.+.-  .......+++|+++||.                              ...+..+...+.++|+|
T Consensus       198 ~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~  277 (328)
T KOG2904|consen  198 SGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP  277 (328)
T ss_pred             cCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc
Confidence            75 77776544431  11112347899999992                              12456777889999999


Q ss_pred             CeEEEEEEc
Q 022962          218 GGLFVAAKG  226 (289)
Q Consensus       218 gG~l~~~~g  226 (289)
                      ||.+.++.+
T Consensus       278 gg~~~le~~  286 (328)
T KOG2904|consen  278 GGFEQLELV  286 (328)
T ss_pred             CCeEEEEec
Confidence            999999886

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.86  E-value=4.4e-21  Score=168.04  Aligned_cols=144  Identities=20%  Similarity=0.223  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHHHHHHH
Q 022962           63 QQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIA  142 (289)
Q Consensus        63 ~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l~la~~  142 (289)
                      ..+.+..+.+.+..+...+|..-..+.+..|.+.+...+...                +|.+|||||||||.+++.+++.
T Consensus         9 k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~----------------~g~~vLDva~GTGd~a~~~~k~   72 (238)
T COG2226           9 KQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIK----------------PGDKVLDVACGTGDMALLLAKS   72 (238)
T ss_pred             cHHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCC----------------CCCEEEEecCCccHHHHHHHHh
Confidence            346778888888888888887777788899998887766543                3889999999999999999999


Q ss_pred             CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc----CcccHHHHHHHHccccccC
Q 022962          143 CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR----AVAEMRILAEYCLPLVRVG  218 (289)
Q Consensus       143 ~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn----~~~~~~~ll~~~~~~Lkpg  218 (289)
                      .+.++|+|+|+|+.|++.+++.+...+..+++++++|+++++.+   +++||+|++.    .+.+++..|++++|+||||
T Consensus        73 ~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~---D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg  149 (238)
T COG2226          73 VGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFP---DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG  149 (238)
T ss_pred             cCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCC---CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC
Confidence            88899999999999999999999998888899999999999976   4899999986    5789999999999999999


Q ss_pred             eEEEEEE
Q 022962          219 GLFVAAK  225 (289)
Q Consensus       219 G~l~~~~  225 (289)
                      |++++..
T Consensus       150 G~~~vle  156 (238)
T COG2226         150 GRLLVLE  156 (238)
T ss_pred             eEEEEEE
Confidence            9998754

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.86  E-value=6.4e-21  Score=168.96  Aligned_cols=188  Identities=16%  Similarity=0.174  Sum_probs=150.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccCCCC-CCCCeEEEEcC
Q 022962           54 SHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCDSSC-NSNLKLVDVGT  130 (289)
Q Consensus        54 ~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~~~~-~~~~~VLDiGc  130 (289)
                      ....+++.++.+++..|.+.+.   .+.|++++.+..++|..++..+...+.|+++++.+  +....+ ..+.+|||+||
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~---~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~~~~~ilDig~   96 (251)
T TIGR03534        20 HPEKELTPEELARFEALLARRA---KGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALERLKKGPLRVLDLGT   96 (251)
T ss_pred             cccCCCCHHHHHHHHHHHHHHH---cCCCHHHHcccceEeceEEEECCCcccCCCChHHHHHHHHHhcccCCCeEEEEeC
Confidence            3456778888888888888765   88899999999999999998888888888877633  111111 23569999999


Q ss_pred             CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc---------
Q 022962          131 GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV---------  201 (289)
Q Consensus       131 G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~---------  201 (289)
                      |+|.+++.++...|..+|+|+|+|+.+++.++++++.+++++++++++|+.+...    .++||+|++|..         
T Consensus        97 G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~Vi~npPy~~~~~~~~  172 (251)
T TIGR03534        97 GSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP----GGKFDLIVSNPPYIPEADIHL  172 (251)
T ss_pred             cHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc----CCceeEEEECCCCCchhhhhh
Confidence            9999999999988889999999999999999999999998889999999976321    368999999731         


Q ss_pred             ---------------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          202 ---------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       202 ---------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                                           ..+..+++.+.++|+|||.++++.+..+.+++.++   +++.||..+++.
T Consensus       173 ~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~---l~~~gf~~v~~~  240 (251)
T TIGR03534       173 LDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRAL---FEAAGFADVETR  240 (251)
T ss_pred             cChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHH---HHhCCCCceEEE
Confidence                                 11347889999999999999999887777666554   558899766553

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.85  E-value=2.3e-20  Score=163.68  Aligned_cols=146  Identities=15%  Similarity=0.195  Sum_probs=123.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ...+|||+|||+|.+++.+|...+.++|+|||+++++.+.|++|.+.++++ +|+++++|+.++..... ..+||+|+||
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~-~~~fD~Ii~N  122 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV-FASFDLIICN  122 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-ccccCEEEeC
Confidence            378999999999999999999888899999999999999999999998885 69999999999865432 2479999999


Q ss_pred             C----------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCC
Q 022962          200 A----------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQS  257 (289)
Q Consensus       200 ~----------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~  257 (289)
                      +                      ..+++.+++.+..+|||||.+++++.+...   .++...++.++|...+++++ +|.
T Consensus       123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl---~ei~~~l~~~~~~~k~i~~V-~p~  198 (248)
T COG4123         123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERL---AEIIELLKSYNLEPKRIQFV-YPK  198 (248)
T ss_pred             CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHH---HHHHHHHHhcCCCceEEEEe-cCC
Confidence            3                      125799999999999999999999876554   44555777999999999977 688


Q ss_pred             CCCceEEEEEEecC
Q 022962          258 PFGQRTAVVCLKSR  271 (289)
Q Consensus       258 ~~~~r~lv~~~k~~  271 (289)
                      .++..++++++..+
T Consensus       199 ~~k~A~~vLv~~~k  212 (248)
T COG4123         199 IGKAANRVLVEAIK  212 (248)
T ss_pred             CCCcceEEEEEEec
Confidence            88777777777653

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.84  E-value=2.2e-20  Score=166.40  Aligned_cols=191  Identities=15%  Similarity=0.096  Sum_probs=143.3

Q ss_pred             ccchhhhhhchhhhhhhccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--c
Q 022962           37 PHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--H  114 (289)
Q Consensus        37 ~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~  114 (289)
                      .-+..++.|..+..         .   .+.+..+.+++   .++.|++|+.+..+|++..+..+..++.|+++|+.+  .
T Consensus        12 ~~~~~a~~l~~~~~---------~---~~~~~~~~~rr---~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~   76 (251)
T TIGR03704        12 FAEDEAALLVDAAR---------T---PGELAAMVDRR---VAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDE   76 (251)
T ss_pred             CHHHHHHHHHHhcc---------C---HHHHHHHHHHH---HcCCCHHHhcccCeEcCeEEEECCCCcCCCccHHHHHHH
Confidence            34556666655541         1   24455555544   499999999999999999888888888888888854  1


Q ss_pred             cCCC---CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCC
Q 022962          115 CDSS---CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFRE  191 (289)
Q Consensus       115 ~~~~---~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~  191 (289)
                      ....   ...+.+|||+|||+|.+++.++...++.+|+|+|+|+.+++.|++|++.++   ++++++|+.+.... ...+
T Consensus        77 ~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~-~~~~  152 (251)
T TIGR03704        77 AAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPT-ALRG  152 (251)
T ss_pred             HHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcch-hcCC
Confidence            1111   122458999999999999999988888899999999999999999998876   47889998763221 1235


Q ss_pred             CceEEEEcCc------------------------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHH
Q 022962          192 QYDVAVARAV------------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQ  241 (289)
Q Consensus       192 ~fD~V~sn~~------------------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~  241 (289)
                      +||+|++|..                              .-++.+++.+.++|+|||+++++.+.++.+++..   .++
T Consensus       153 ~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~---~l~  229 (251)
T TIGR03704       153 RVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVE---AFA  229 (251)
T ss_pred             CEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHH---HHH
Confidence            7999999931                              0146888899999999999999999877766544   556


Q ss_pred             HhCCeEeE
Q 022962          242 LMGASLLQ  249 (289)
Q Consensus       242 ~~g~~~~~  249 (289)
                      +.||...-
T Consensus       230 ~~g~~~~~  237 (251)
T TIGR03704       230 RAGLIARV  237 (251)
T ss_pred             HCCCCcee
Confidence            88886543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.83  E-value=1.9e-20  Score=164.81  Aligned_cols=146  Identities=17%  Similarity=0.194  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHHHHH
Q 022962           61 TRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLA  140 (289)
Q Consensus        61 ~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l~la  140 (289)
                      +...+.+..+++.+...+...|-.-..+.+..|.+.+.+....                .++.+|||+|||||.++..++
T Consensus         3 ~~k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~----------------~~g~~vLDv~~GtG~~~~~l~   66 (233)
T PF01209_consen    3 EAKEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGL----------------RPGDRVLDVACGTGDVTRELA   66 (233)
T ss_dssp             ----------------------------------SHHHHHHT------------------S--EEEEET-TTSHHHHHHG
T ss_pred             ccHHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCC----------------CCCCEEEEeCCChHHHHHHHH
Confidence            3445667788888887777777766667788888877664432                137899999999999999998


Q ss_pred             HHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc----CcccHHHHHHHHcccc
Q 022962          141 IAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR----AVAEMRILAEYCLPLV  215 (289)
Q Consensus       141 ~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn----~~~~~~~ll~~~~~~L  215 (289)
                      +.. |.++|+|+|+|+.|++.|++..+..+..||+++++|+++++.+   +++||+|++.    .+.++...++++.|+|
T Consensus        67 ~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~---d~sfD~v~~~fglrn~~d~~~~l~E~~RVL  143 (233)
T PF01209_consen   67 RRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP---DNSFDAVTCSFGLRNFPDRERALREMYRVL  143 (233)
T ss_dssp             GGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S----TT-EEEEEEES-GGG-SSHHHHHHHHHHHE
T ss_pred             HHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC---CCceeEEEHHhhHHhhCCHHHHHHHHHHHc
Confidence            764 5789999999999999999999998888999999999999875   4899999976    4668899999999999


Q ss_pred             ccCeEEEEEE
Q 022962          216 RVGGLFVAAK  225 (289)
Q Consensus       216 kpgG~l~~~~  225 (289)
                      ||||++++..
T Consensus       144 kPGG~l~ile  153 (233)
T PF01209_consen  144 KPGGRLVILE  153 (233)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCeEEEEee
Confidence            9999998764

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.81  E-value=3.7e-18  Score=149.83  Aligned_cols=142  Identities=20%  Similarity=0.178  Sum_probs=112.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.++..++... ++.+|+|+|+|+.+++.++++.+..++++++++++|+++++..   +++||+|+++
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~  121 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD---DNSFDYVTIG  121 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC---CCCccEEEEe
Confidence            47899999999999999999875 6789999999999999999999888888899999999887543   3789999987


Q ss_pred             ----CcccHHHHHHHHccccccCeEEEEEEcCC-cHH---------------------------------------HHHH
Q 022962          200 ----AVAEMRILAEYCLPLVRVGGLFVAAKGHD-PQE---------------------------------------EVKN  235 (289)
Q Consensus       200 ----~~~~~~~ll~~~~~~LkpgG~l~~~~g~~-~~~---------------------------------------ei~~  235 (289)
                          ...++..+++++.++|+|||++++..... ...                                       ...+
T Consensus       122 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (231)
T TIGR02752       122 FGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDE  201 (231)
T ss_pred             cccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHH
Confidence                35677899999999999999998764321 000                                       0134


Q ss_pred             HHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962          236 SERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       236 ~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      +...++++||...++..+    ..|....++..|
T Consensus       202 l~~~l~~aGf~~~~~~~~----~~g~~~~~~~~~  231 (231)
T TIGR02752       202 LAEMFQEAGFKDVEVKSY----TGGVAAMHMGFK  231 (231)
T ss_pred             HHHHHHHcCCCeeEEEEc----ccceEEEEEEEC
Confidence            566788999998887644    346666666543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.80  E-value=3.6e-18  Score=156.84  Aligned_cols=181  Identities=18%  Similarity=0.232  Sum_probs=133.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhhcC--------cCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeE
Q 022962           54 SHFETLNTRQQEQIHLYVDALLQWNRK--------MNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKL  125 (289)
Q Consensus        54 ~~~~~~~~~~~~~l~~~~~~l~~~n~~--------~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~V  125 (289)
                      .....+++.+.+.+....+  ..|+..        +|.++..-..+.+.+++.++.....+             .++.+|
T Consensus        71 ~~~~s~~~~e~~~f~~~a~--~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~-------------~~g~~I  135 (322)
T PLN02396         71 STTTSLNEDELAKFSAIAD--TWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKP-------------FEGLKF  135 (322)
T ss_pred             CCCCCCCHHHHHHHHHHHH--HhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccC-------------CCCCEE
Confidence            3446889999999999988  556643        33444444444455555554432211             136799


Q ss_pred             EEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC----
Q 022962          126 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA----  200 (289)
Q Consensus       126 LDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----  200 (289)
                      ||||||+|.++..+|+  .+.+|+|||+++++++.|+++++..+. .+++++++|+++++..   +++||+|++..    
T Consensus       136 LDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~---~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        136 IDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE---GRKFDAVLSLEVIEH  210 (322)
T ss_pred             EEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc---cCCCCEEEEhhHHHh
Confidence            9999999999998885  368999999999999999998776554 4799999999987643   36899999985    


Q ss_pred             cccHHHHHHHHccccccCeEEEEEEcCCc---------------------------HHHHHHHHHHHHHhCCeEeEEeee
Q 022962          201 VAEMRILAEYCLPLVRVGGLFVAAKGHDP---------------------------QEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       201 ~~~~~~ll~~~~~~LkpgG~l~~~~g~~~---------------------------~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      +.+...+++++.++|||||.+++......                           .-...++.+.++.+||++.++.-+
T Consensus       211 v~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~  290 (322)
T PLN02396        211 VANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGF  290 (322)
T ss_pred             cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence            56789999999999999999997642110                           001245667788999999988766


Q ss_pred             e
Q 022962          254 E  254 (289)
Q Consensus       254 ~  254 (289)
                      .
T Consensus       291 ~  291 (322)
T PLN02396        291 V  291 (322)
T ss_pred             E
Confidence            4

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.78  E-value=2e-17  Score=148.27  Aligned_cols=102  Identities=16%  Similarity=0.146  Sum_probs=85.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHH---HcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVS---LTQLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~---~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ++.+|||+|||+|.++..++... +.++|+|+|+|++|++.|+++..   ....++++++++|+++++.+   +++||+|
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~---~~sfD~V  149 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD---DCYFDAI  149 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC---CCCEeEE
Confidence            37799999999999999988764 56899999999999999987653   22345799999999988754   3789999


Q ss_pred             EEcC----cccHHHHHHHHccccccCeEEEEEE
Q 022962          197 VARA----VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       197 ~sn~----~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +++.    +.++..+++++.++|||||++++..
T Consensus       150 ~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        150 TMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             EEecccccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            9873    5678999999999999999998754

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.78  E-value=3.3e-18  Score=133.00  Aligned_cols=99  Identities=22%  Similarity=0.307  Sum_probs=84.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccc-cccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRA-ETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~-~~~~~~~~~~~~fD~V~sn  199 (289)
                      +.+|||||||+|..++.+++.+++.+|+|+|+|+.+++.+++++...+. ++++++++|+ ....    ..++||+|++.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~v~~~   77 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD----FLEPFDLVICS   77 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT----TSSCEEEEEEC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc----cCCCCCEEEEC
Confidence            7799999999999999999977899999999999999999999966554 5799999999 3332    23679999998


Q ss_pred             C-----c---ccHHHHHHHHccccccCeEEEEE
Q 022962          200 A-----V---AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ~-----~---~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .     .   .+...+++.+.+.|+|||++++.
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence            7     2   23468899999999999999875

...

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.77  E-value=1.9e-17  Score=138.56  Aligned_cols=127  Identities=20%  Similarity=0.272  Sum_probs=112.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .++++++|||||||.+++.+|...|.++|+|||.++++++..++|++++|.+|++++.+++.+.....   .+||.|+..
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~---~~~daiFIG  109 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL---PSPDAIFIG  109 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC---CCCCEEEEC
Confidence            35889999999999999999988999999999999999999999999999999999999998864421   279999999


Q ss_pred             CcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCC-eEeEEe
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA-SLLQLC  251 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~-~~~~~~  251 (289)
                      .-.+++.+++.+...|||||++++-  ....+....+.+.+++.|+ +++++.
T Consensus       110 Gg~~i~~ile~~~~~l~~ggrlV~n--aitlE~~~~a~~~~~~~g~~ei~~v~  160 (187)
T COG2242         110 GGGNIEEILEAAWERLKPGGRLVAN--AITLETLAKALEALEQLGGREIVQVQ  160 (187)
T ss_pred             CCCCHHHHHHHHHHHcCcCCeEEEE--eecHHHHHHHHHHHHHcCCceEEEEE
Confidence            8899999999999999999999863  4566777788888999999 666554

>PLN02672 methionine S-methyltransferase

Probab=99.76  E-value=3.4e-18  Score=175.97  Aligned_cols=255  Identities=13%  Similarity=0.111  Sum_probs=170.0

Q ss_pred             ccchhhhhhccCCCCcccCCccchhhhhhchhhhhhhccCCCCCHHHHHHHHHHHHHHHHhh--------------cCcC
Q 022962           17 PFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDALLQWN--------------RKMN   82 (289)
Q Consensus        17 ~~~~~~~~~h~~~~~~~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~n--------------~~~~   82 (289)
                      ..+|..|+.|-+.+....|..-|...+.|...          -+..+...+..-.+.+..-.              ..+-
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (1082)
T PLN02672          5 DAEVDEFLDQCKQSGDAAYGAFKGVLERLEDP----------TTRSDARKLLSAVEKRVAASEAGEDCFATYHFRIHDLV   74 (1082)
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhcCc----------cccHHHHHHHHHHHHHhcccCcccchhhhcceEEeeEE
Confidence            45777888888888877777655433333222          22222222221111111000              1122


Q ss_pred             ceeecChHHHHHhhhhhccccCCCCcccccc-ccCCCCC----CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHH
Q 022962           83 LTAVKDVNEVMERHIDDSLAIIPPIKNSYTS-HCDSSCN----SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKR  157 (289)
Q Consensus        83 l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~-~~~~~~~----~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~  157 (289)
                      +....|..+||+..+.....+++|+++||.+ ......+    ++.+|||+|||+|++++.++..+|..+|+|+|+|+.+
T Consensus        75 ~~~~~G~~~F~~l~~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~A  154 (1082)
T PLN02672         75 LDDYEGFRNRKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRA  154 (1082)
T ss_pred             EcCCCCeEEecCCceeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHH
Confidence            3333577899999999999999999999965 1111111    2468999999999999999999888899999999999


Q ss_pred             HHHHHHHHHHcCC----------------CCEEEEeccccccCCCCcCCCCceEEEEcC--------------cc-----
Q 022962          158 CVFLEHAVSLTQL----------------LNVQIVRGRAETLGKDVSFREQYDVAVARA--------------VA-----  202 (289)
Q Consensus       158 l~~a~~~~~~~~l----------------~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--------------~~-----  202 (289)
                      ++.|++|++.+++                ++++++++|+.+....  ...+||+|+||.              +.     
T Consensus       155 l~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~--~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~  232 (1082)
T PLN02672        155 VKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD--NNIELDRIVGCIPQILNPNPEAMSKLVTENASE  232 (1082)
T ss_pred             HHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc--cCCceEEEEECCCcCCCcchhhcChhhhhcccc
Confidence            9999999998653                3699999999765321  113699999992              10     


Q ss_pred             -----------------------cHHHHHHHHccccccCeEEEEEEcCCcHHHHH-HHHHHHHHhCCeEeEEeeee---c
Q 022962          203 -----------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVK-NSERAVQLMGASLLQLCSVE---S  255 (289)
Q Consensus       203 -----------------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~-~~~~~l~~~g~~~~~~~~~~---~  255 (289)
                                             -++.+++++.++|+|||.++++.|.++.+.+. .+++   ..||...+++...   .
T Consensus       233 ~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~---~~gf~~~~~~~~~~~~~  309 (1082)
T PLN02672        233 EFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFE---RRGFRITKLWQTKINQA  309 (1082)
T ss_pred             ccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHH---HCCCCeeEEeeehhhhc
Confidence                                   13678889999999999999999999998876 4544   7898887766432   1


Q ss_pred             CCCCCceEEEEEEecCCCCCCCCCCCCCCcCCCC
Q 022962          256 QSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL  289 (289)
Q Consensus       256 ~~~~~~r~lv~~~k~~~~p~~~pr~~g~~~~~~~  289 (289)
                      .+. .-+-+|.++  +++|..|-=-+|+...+|+
T Consensus       310 ~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  340 (1082)
T PLN02672        310 ADT-DISALVEIE--KNSRHRFEFFMGLVGDQPI  340 (1082)
T ss_pred             ccc-chHHHHHHh--hcCccceeeeeccCCCCch
Confidence            111 112233333  3455666555666665553

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.76  E-value=4.3e-17  Score=141.44  Aligned_cols=153  Identities=19%  Similarity=0.231  Sum_probs=124.2

Q ss_pred             CCCCCHHHHHH-HHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCCh
Q 022962           56 FETLNTRQQEQ-IHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGL  134 (289)
Q Consensus        56 ~~~~~~~~~~~-l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~  134 (289)
                      +.++.+++.++ +..-.+.++....-+|..-..+.+.+|+..+.+.+...                ++.++||++||||.
T Consensus        50 f~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~----------------~~m~~lDvaGGTGD  113 (296)
T KOG1540|consen   50 FKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPG----------------KGMKVLDVAGGTGD  113 (296)
T ss_pred             ccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCC----------------CCCeEEEecCCcch
Confidence            35556666555 45556666655666777777888999988887777543                37899999999999


Q ss_pred             HHHHHHHHCCC------CEEEEEeCChHHHHHHHHHHHHcCCC---CEEEEeccccccCCCCcCCCCceEEEEc----Cc
Q 022962          135 PGLVLAIACPD------WKVTLLESMNKRCVFLEHAVSLTQLL---NVQIVRGRAETLGKDVSFREQYDVAVAR----AV  201 (289)
Q Consensus       135 ~~l~la~~~p~------~~V~~iD~s~~~l~~a~~~~~~~~l~---ni~~~~~d~~~~~~~~~~~~~fD~V~sn----~~  201 (289)
                      +++.+....+.      .+|+.+|+|+.|++.+++.+.+.++.   .+.++.+|+++++.+   +.+||..++.    .+
T Consensus       114 iaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd---d~s~D~yTiafGIRN~  190 (296)
T KOG1540|consen  114 IAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD---DDSFDAYTIAFGIRNV  190 (296)
T ss_pred             hHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC---CCcceeEEEecceecC
Confidence            99999887665      89999999999999999999887763   389999999999976   3789999875    46


Q ss_pred             ccHHHHHHHHccccccCeEEEEEEcC
Q 022962          202 AEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       202 ~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      .+++..+++++|+|||||+|.+..-.
T Consensus       191 th~~k~l~EAYRVLKpGGrf~cLeFs  216 (296)
T KOG1540|consen  191 THIQKALREAYRVLKPGGRFSCLEFS  216 (296)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEEEEcc
Confidence            68999999999999999999987643

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.75  E-value=4.4e-17  Score=138.79  Aligned_cols=126  Identities=19%  Similarity=0.260  Sum_probs=102.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.+++.+++.+|+.+|+++|+|+.+++.++++++.+++.+++++++|+...     ..++||+|+++.
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-----~~~~~D~v~~~~  105 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-----LPGKADAIFIGG  105 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-----cCcCCCEEEECC
Confidence            477999999999999999998888899999999999999999999998887899999987531     136799999886


Q ss_pred             c-ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          201 V-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       201 ~-~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      . ..+..+++.+.+.|+|||++++..-  ..+...++.+.+++.|+...++..+
T Consensus       106 ~~~~~~~~l~~~~~~Lk~gG~lv~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~  157 (187)
T PRK08287        106 SGGNLTAIIDWSLAHLHPGGRLVLTFI--LLENLHSALAHLEKCGVSELDCVQL  157 (187)
T ss_pred             CccCHHHHHHHHHHhcCCCeEEEEEEe--cHhhHHHHHHHHHHCCCCcceEEEE
Confidence            3 4678899999999999999987542  1233344556777899876665433

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.75  E-value=2e-17  Score=136.17  Aligned_cols=105  Identities=20%  Similarity=0.377  Sum_probs=91.4

Q ss_pred             CCCeEEEEcCCCChHHHHHH-HHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLA-IACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la-~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.++..++ ...|+.+|+|+|+|+++++.|++.++.++++|++++++|+.+++..  +.++||+|+++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~--~~~~~D~I~~~   80 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE--LEEKFDIIISN   80 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC--SSTTEEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc--cCCCeeEEEEc
Confidence            47899999999999999999 4578899999999999999999999999999999999999996532  22689999998


Q ss_pred             C----cccHHHHHHHHccccccCeEEEEEEcC
Q 022962          200 A----VAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      .    ..+...+++.+.++|++||.+++....
T Consensus        81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            5    456789999999999999999987643

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.75  E-value=6.9e-18  Score=146.07  Aligned_cols=98  Identities=23%  Similarity=0.347  Sum_probs=88.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||+|||.|.++..+|+.  ++.|+|+|+++++++.|+..+.+.++ ++.+.+..++++...   .++||+|+|.. 
T Consensus        60 g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~---~~~FDvV~cmEV  133 (243)
T COG2227          60 GLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASA---GGQFDVVTCMEV  133 (243)
T ss_pred             CCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhc---CCCccEEEEhhH
Confidence            889999999999999999987  69999999999999999999999998 488999999998653   27999999995 


Q ss_pred             ---cccHHHHHHHHccccccCeEEEEEE
Q 022962          201 ---VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ---~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                         +++++.+++.|.+++||||.+++..
T Consensus       134 lEHv~dp~~~~~~c~~lvkP~G~lf~ST  161 (243)
T COG2227         134 LEHVPDPESFLRACAKLVKPGGILFLST  161 (243)
T ss_pred             HHccCCHHHHHHHHHHHcCCCcEEEEec
Confidence               6789999999999999999998753

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.74  E-value=1.7e-17  Score=139.37  Aligned_cols=102  Identities=22%  Similarity=0.271  Sum_probs=88.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||+|||+|.+++.+++..|..+|+++|+|+.+++.+++|++.+++++++++++|+.+...    +++||+|+||..
T Consensus        32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~----~~~fD~Iv~NPP  107 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP----DGKFDLIVSNPP  107 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC----TTCEEEEEE---
T ss_pred             CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc----ccceeEEEEccc
Confidence            6799999999999999999998988999999999999999999999999889999999876432    378999999941


Q ss_pred             ---------ccHHHHHHHHccccccCeEEEEEEcC
Q 022962          202 ---------AEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       202 ---------~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                               ...+.+++++.++|+|||.+++....
T Consensus       108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~  142 (170)
T PF05175_consen  108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS  142 (170)
T ss_dssp             SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             hhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence                     24689999999999999999876654

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=1e-16  Score=144.23  Aligned_cols=138  Identities=20%  Similarity=0.197  Sum_probs=105.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..++.+|||+|||||++++..++. ...+|+|+|+++-+++.+++|++.|+++. ++.-..+..+...    .++||+|+
T Consensus       160 ~~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~----~~~~DvIV  234 (300)
T COG2264         160 LKKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE----NGPFDVIV  234 (300)
T ss_pred             hcCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc----cCcccEEE
Confidence            346899999999999999998765 56789999999999999999999999864 3222233332221    25899999


Q ss_pred             EcCccc-HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962          198 ARAVAE-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       198 sn~~~~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      +|-.++ +..+...+.+.|||||++++ +|.- .+....+.+++...||.+.+..      ...++..+.++|
T Consensus       235 ANILA~vl~~La~~~~~~lkpgg~lIl-SGIl-~~q~~~V~~a~~~~gf~v~~~~------~~~eW~~i~~kr  299 (300)
T COG2264         235 ANILAEVLVELAPDIKRLLKPGGRLIL-SGIL-EDQAESVAEAYEQAGFEVVEVL------EREEWVAIVGKR  299 (300)
T ss_pred             ehhhHHHHHHHHHHHHHHcCCCceEEE-Eeeh-HhHHHHHHHHHHhCCCeEeEEE------ecCCEEEEEEEc
Confidence            998875 57888999999999999976 6632 2223445566778999988775      236788887775

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.72  E-value=3.3e-16  Score=132.46  Aligned_cols=122  Identities=11%  Similarity=0.086  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||+|||+|.+++.++...+  +|+++|+|+.+++.++++++.++. +++++++|+.+..     .++||+|++|..
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----~~~fD~Vi~n~p   91 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-----RGKFDVILFNPP   91 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-----CCcccEEEECCC
Confidence            57899999999999999987643  999999999999999999998876 6899999987643     258999999831


Q ss_pred             c-------------------------cHHHHHHHHccccccCeEEEEEEcCCc-HHHHHHHHHHHHHhCCeEeEEeeee
Q 022962          202 A-------------------------EMRILAEYCLPLVRVGGLFVAAKGHDP-QEEVKNSERAVQLMGASLLQLCSVE  254 (289)
Q Consensus       202 ~-------------------------~~~~ll~~~~~~LkpgG~l~~~~g~~~-~~ei~~~~~~l~~~g~~~~~~~~~~  254 (289)
                      -                         .++.+++++.++|+|||.+++...... ..++   ...+++.||....+....
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~---~~~l~~~gf~~~~~~~~~  167 (179)
T TIGR00537        92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDT---FDKLDERGFRYEIVAERG  167 (179)
T ss_pred             CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHH---HHHHHhCCCeEEEEEEee
Confidence            0                         146789999999999999998765433 4444   445668999888776553

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.71  E-value=1.2e-16  Score=144.77  Aligned_cols=134  Identities=22%  Similarity=0.280  Sum_probs=98.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .++.+|||+|||||++++..++. ...+|+|+|+++.+++.|++|++.+++.. +.+ . ...+..     .++||+|++
T Consensus       160 ~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v-~-~~~~~~-----~~~~dlvvA  231 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEV-S-LSEDLV-----EGKFDLVVA  231 (295)
T ss_dssp             STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-S-CTSCTC-----CS-EEEEEE
T ss_pred             cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-E-Eecccc-----cccCCEEEE
Confidence            45789999999999999997764 66799999999999999999999999875 433 2 222221     378999999


Q ss_pred             cCccc-HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962          199 RAVAE-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  270 (289)
Q Consensus       199 n~~~~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~  270 (289)
                      |-.++ +..++..+.++|+|||++++ +|.-. ++...+.++++. ||.+.+..      ..+.+..++++|+
T Consensus       232 NI~~~vL~~l~~~~~~~l~~~G~lIl-SGIl~-~~~~~v~~a~~~-g~~~~~~~------~~~~W~~l~~~Kk  295 (295)
T PF06325_consen  232 NILADVLLELAPDIASLLKPGGYLIL-SGILE-EQEDEVIEAYKQ-GFELVEER------EEGEWVALVFKKK  295 (295)
T ss_dssp             ES-HHHHHHHHHHCHHHEEEEEEEEE-EEEEG-GGHHHHHHHHHT-TEEEEEEE------EETTEEEEEEEE-
T ss_pred             CCCHHHHHHHHHHHHHhhCCCCEEEE-ccccH-HHHHHHHHHHHC-CCEEEEEE------EECCEEEEEEEeC
Confidence            97764 57888899999999999986 66322 223444556655 99887765      2477888888874

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK04266 fibrillarin; Provisional

Probab=99.70  E-value=8.8e-16  Score=134.61  Aligned_cols=145  Identities=19%  Similarity=0.203  Sum_probs=103.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .++.+|||+|||+|.+++.++...+..+|+|+|+++.|++.+.++++..  .|+.++.+|+.+........++||+|++.
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i~~d  148 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVIYQD  148 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEEEEC
Confidence            3588999999999999999998877679999999999999888877654  58999999987531111123579999986


Q ss_pred             Ccc--cHHHHHHHHccccccCeEEEEE------EcC-CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCC-CceEEEEEEe
Q 022962          200 AVA--EMRILAEYCLPLVRVGGLFVAA------KGH-DPQEEVKNSERAVQLMGASLLQLCSVESQSPF-GQRTAVVCLK  269 (289)
Q Consensus       200 ~~~--~~~~ll~~~~~~LkpgG~l~~~------~g~-~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~-~~r~lv~~~k  269 (289)
                      ...  ....+++++.++|||||.+++.      .-. ......+...+.++.+||++++...+   .+. .+...++.++
T Consensus       149 ~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l---~p~~~~h~~~v~~~  225 (226)
T PRK04266        149 VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL---EPYHKDHAAVVARK  225 (226)
T ss_pred             CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC---CCCcCCeEEEEEEc
Confidence            432  2245689999999999999983      211 11222233456788899998877644   233 3344555443

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.70  E-value=1.7e-16  Score=136.95  Aligned_cols=125  Identities=16%  Similarity=0.056  Sum_probs=101.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccc-cccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~-~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|..+..++...|..+|+|+|+|+++++.|+++++..+++|++++++|+ +.++.. ..+++||+|+++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~-~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM-FPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH-cCccccceEEEE
Confidence            367999999999999999998888899999999999999999999998888899999999 665411 013689999987


Q ss_pred             Ccc------------cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEe
Q 022962          200 AVA------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL  248 (289)
Q Consensus       200 ~~~------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~  248 (289)
                      ...            ....+++++.++|||||.|++...  ...-+..+.+.+++.|+...
T Consensus       119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~--~~~~~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD--WEGYAEYMLEVLSAEGGFLV  177 (202)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC--CHHHHHHHHHHHHhCccccc
Confidence            321            147899999999999999998653  34445566777888887543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.70  E-value=6.7e-17  Score=156.45  Aligned_cols=184  Identities=12%  Similarity=0.135  Sum_probs=125.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCCh
Q 022962           55 HFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGL  134 (289)
Q Consensus        55 ~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~  134 (289)
                      ...+++.++...+..+.++++     .....+.+...||+..+.....+.    +|+.+-....+.++.+|||||||+|.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~-----y~~~~i~~~~~f~g~~~~v~~~v~----~te~l~~~~~~~~~~~vLDiGcG~G~  279 (475)
T PLN02336        209 LWQKVSSTNDKGFQRFLDNVQ-----YKSSGILRYERVFGEGFVSTGGLE----TTKEFVDKLDLKPGQKVLDVGCGIGG  279 (475)
T ss_pred             EEEeecCCcchhHHHHhhhhc-----cccccHHHHHHHhCCCCCCCchHH----HHHHHHHhcCCCCCCEEEEEeccCCH
Confidence            334566666666666666521     111227778888876554333322    11111000113457899999999999


Q ss_pred             HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC----cccHHHHHHH
Q 022962          135 PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEY  210 (289)
Q Consensus       135 ~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~~~ll~~  210 (289)
                      +++.++... +++|+|+|+|+.+++.|++++...+ .+++++++|+.+.+.+   +++||+|+|+.    +.+...++++
T Consensus       280 ~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~---~~~fD~I~s~~~l~h~~d~~~~l~~  354 (475)
T PLN02336        280 GDFYMAENF-DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYP---DNSFDVIYSRDTILHIQDKPALFRS  354 (475)
T ss_pred             HHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCC---CCCEEEEEECCcccccCCHHHHHHH
Confidence            999999765 6799999999999999998876443 3699999999876543   36899999974    4578899999


Q ss_pred             HccccccCeEEEEEEcC----CcHH--------------HHHHHHHHHHHhCCeEeEEee
Q 022962          211 CLPLVRVGGLFVAAKGH----DPQE--------------EVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       211 ~~~~LkpgG~l~~~~g~----~~~~--------------ei~~~~~~l~~~g~~~~~~~~  252 (289)
                      +.++|||||.+++....    ....              ...+..+.++++||..+++..
T Consensus       355 ~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d  414 (475)
T PLN02336        355 FFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAED  414 (475)
T ss_pred             HHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence            99999999999976311    1111              123456677889998776643

>TIGR00452 methyltransferase, putative

Probab=99.70  E-value=7.5e-16  Score=141.00  Aligned_cols=191  Identities=16%  Similarity=0.131  Sum_probs=131.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcC-cCceeecChHHHHHhhhhhccc-cCCCCccccccccCCCCCCCCeEEEEcCCC
Q 022962           55 HFETLNTRQQEQIHLYVDALLQWNRK-MNLTAVKDVNEVMERHIDDSLA-IIPPIKNSYTSHCDSSCNSNLKLVDVGTGA  132 (289)
Q Consensus        55 ~~~~~~~~~~~~l~~~~~~l~~~n~~-~~l~~~~~~~~~~~~~~~~sl~-~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~  132 (289)
                      ...++++.+.++++...+.+..|.+. +++..+....+.......+... .+.+             .++.+|||||||+
T Consensus        66 ~~~~~~~~~~~~l~~~l~~l~p~~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~-------------~~g~~VLDvGCG~  132 (314)
T TIGR00452        66 KSNPLSAGQIKRILEEIMALMPWRKGPFELSGIKIDSEWRSDIKWDRVLPHLSP-------------LKGRTILDVGCGS  132 (314)
T ss_pred             CCCCCCHHHHHHHHHHHHhcCCCCCCCcccccccCCHHHHHHHHHHHHHHhcCC-------------CCCCEEEEeccCC
Confidence            45678999999999999988877543 5665555433332221111111 0111             1378999999999


Q ss_pred             ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-CCCEEEEeccccccCCCCcCCCCceEEEEcC----cccHHHH
Q 022962          133 GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRIL  207 (289)
Q Consensus       133 G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~~~l  207 (289)
                      |..+..++... ...|+|||+|+.|+..++...+..+ ..++.+...++++++..    .+||+|+|+.    ..++..+
T Consensus       133 G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~----~~FD~V~s~gvL~H~~dp~~~  207 (314)
T TIGR00452       133 GYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL----YAFDTVFSMGVLYHRKSPLEH  207 (314)
T ss_pred             cHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC----CCcCEEEEcchhhccCCHHHH
Confidence            99988888653 3489999999999887655444333 23688888999888642    5799999996    3477899


Q ss_pred             HHHHccccccCeEEEEEE----cCC-----cHH------------HHHHHHHHHHHhCCeEeEEeeeecCCCCCceE
Q 022962          208 AEYCLPLVRVGGLFVAAK----GHD-----PQE------------EVKNSERAVQLMGASLLQLCSVESQSPFGQRT  263 (289)
Q Consensus       208 l~~~~~~LkpgG~l~~~~----g~~-----~~~------------ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~  263 (289)
                      +++++++|+|||.|++..    +..     ...            ....+...+++.||+.+++.......+..+|.
T Consensus       208 L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~tt~~eqr~  284 (314)
T TIGR00452       208 LKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLKTTPEEQRK  284 (314)
T ss_pred             HHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccCCCHHHhhh
Confidence            999999999999999752    211     000            13445667889999999887665444444443

Known examples to date are restricted to the proteobacteria.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.69  E-value=2.8e-16  Score=134.72  Aligned_cols=125  Identities=11%  Similarity=0.056  Sum_probs=98.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      ..+|||||||+|.+++.+|..+|+..|+|+|+++++++.|++++...++.|++++++|+.++......++++|.|+++..
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p   96 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP   96 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence            56899999999999999999999999999999999999999999999998999999999875421111358999999842


Q ss_pred             cc------------HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhC-CeEe
Q 022962          202 AE------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG-ASLL  248 (289)
Q Consensus       202 ~~------------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g-~~~~  248 (289)
                      .+            .+.+++.+.++|||||.|++....  ......+.+.+...+ |...
T Consensus        97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~--~~~~~~~~~~~~~~~~f~~~  154 (194)
T TIGR00091        97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN--EPLFEDMLKVLSENDLFENT  154 (194)
T ss_pred             CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHhCCCeEec
Confidence            21            257999999999999999987643  333444455566665 5543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.69  E-value=6.8e-16  Score=132.44  Aligned_cols=127  Identities=16%  Similarity=0.233  Sum_probs=99.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.+++.++...++.+|+++|+|+++++.+++|++.+++++++++++|+.+....  ....+|.++...
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~--~~~~~d~v~~~~  117 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ--LAPAPDRVCIEG  117 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhh--CCCCCCEEEEEC
Confidence            478999999999999999998778899999999999999999999999988899999998652111  123467877766


Q ss_pred             cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHH---hCCeEeEEe
Q 022962          201 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQL---MGASLLQLC  251 (289)
Q Consensus       201 ~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~---~g~~~~~~~  251 (289)
                      ...+..+++.+.+.|+|||++++....  .+.+..+.+.++.   .+++++++.
T Consensus       118 ~~~~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  169 (196)
T PRK07402        118 GRPIKEILQAVWQYLKPGGRLVATASS--LEGLYAISEGLAQLQARNIEVVQAA  169 (196)
T ss_pred             CcCHHHHHHHHHHhcCCCeEEEEEeec--HHHHHHHHHHHHhcCCCCceEEEEE
Confidence            567789999999999999999987643  3333444444544   466666654

>PLN02244 tocopherol O-methyltransferase

Probab=99.69  E-value=5.3e-16  Score=144.11  Aligned_cols=129  Identities=14%  Similarity=0.115  Sum_probs=104.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.++..++..+ +++|+|||+|+.+++.++++++..++. +++++++|+.+++..   +++||+|+++
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~---~~~FD~V~s~  193 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFE---DGQFDLVWSM  193 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCC---CCCccEEEEC
Confidence            47899999999999999999876 679999999999999999999888874 699999999887653   3789999997


Q ss_pred             C----cccHHHHHHHHccccccCeEEEEEEcC------C----cHH------------------HHHHHHHHHHHhCCeE
Q 022962          200 A----VAEMRILAEYCLPLVRVGGLFVAAKGH------D----PQE------------------EVKNSERAVQLMGASL  247 (289)
Q Consensus       200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~g~------~----~~~------------------ei~~~~~~l~~~g~~~  247 (289)
                      .    +.+...+++++.++|||||++++..-.      .    ...                  ...++.+.++++||..
T Consensus       194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~  273 (340)
T PLN02244        194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQD  273 (340)
T ss_pred             CchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCe
Confidence            4    457789999999999999999975310      0    000                  1234556788899988


Q ss_pred             eEEeee
Q 022962          248 LQLCSV  253 (289)
Q Consensus       248 ~~~~~~  253 (289)
                      ++...+
T Consensus       274 v~~~d~  279 (340)
T PLN02244        274 IKTEDW  279 (340)
T ss_pred             eEeeeC
Confidence            877654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.69  E-value=4.2e-16  Score=122.77  Aligned_cols=101  Identities=22%  Similarity=0.197  Sum_probs=87.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||+|||+|.++..++...|..+|+++|+|+.+++.++++++.+++.+++++.+|+......  ..++||.|++.. 
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~v~~~~~   97 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED--SLPEPDRVFIGGS   97 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh--hcCCCCEEEECCc
Confidence            67999999999999999999888899999999999999999999998888899999988753221  236899999875 


Q ss_pred             cccHHHHHHHHccccccCeEEEEE
Q 022962          201 VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       201 ~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ......+++.+.++|+|||++++.
T Consensus        98 ~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        98 GGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             chhHHHHHHHHHHHcCCCCEEEEE
Confidence            456789999999999999999874

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.68  E-value=1.8e-15  Score=130.10  Aligned_cols=123  Identities=17%  Similarity=0.243  Sum_probs=100.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+|||+|||+|.+++.+|... +..+|+++|+++++++.++++++.+++ ++++++.+|+.+....  ..++||+|++
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~--~~~~~D~V~~  117 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT--INEKFDRIFI  117 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh--cCCCCCEEEE
Confidence            47899999999999999998764 567999999999999999999999984 6899999998764221  2367999999


Q ss_pred             cC-cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeE
Q 022962          199 RA-VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASL  247 (289)
Q Consensus       199 n~-~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~  247 (289)
                      +. ...+..+++.+.++|+|||++++..  ...+.+.++...+++.||..
T Consensus       118 ~~~~~~~~~~l~~~~~~LkpgG~lv~~~--~~~~~~~~~~~~l~~~g~~~  165 (198)
T PRK00377        118 GGGSEKLKEIISASWEIIKKGGRIVIDA--ILLETVNNALSALENIGFNL  165 (198)
T ss_pred             CCCcccHHHHHHHHHHHcCCCcEEEEEe--ecHHHHHHHHHHHHHcCCCe
Confidence            64 4578899999999999999998643  23455667777888899854

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.67  E-value=9.3e-16  Score=131.84  Aligned_cols=97  Identities=22%  Similarity=0.217  Sum_probs=84.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||+|||+|..++.+|..  +.+|+|+|+|+.+++.++++++..++.++++...|+.++..    +++||+|+++.+
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~I~~~~~  104 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF----DGEYDFILSTVV  104 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc----CCCcCEEEEecc
Confidence            679999999999999999975  67999999999999999999999888889999999987643    367999999843


Q ss_pred             ------ccHHHHHHHHccccccCeEEEEE
Q 022962          202 ------AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       202 ------~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                            .+...+++.+.++|+|||.+++.
T Consensus       105 ~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        105 LMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence                  24689999999999999996553

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.67  E-value=1.7e-15  Score=136.40  Aligned_cols=130  Identities=16%  Similarity=0.212  Sum_probs=103.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.++.+|||+|||+|..++.++... +..+|+|+|+++.+++.|+++.+..+.++++++.+|+++++..   +++||+|+
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~---~~~fD~Vi  151 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVA---DNSVDVII  151 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCC---CCceeEEE
Confidence            4468899999999999888777664 5578999999999999999999998888999999999987643   36899999


Q ss_pred             EcCc----ccHHHHHHHHccccccCeEEEEEEc---CC-cH----------------HHHHHHHHHHHHhCCeEeEEe
Q 022962          198 ARAV----AEMRILAEYCLPLVRVGGLFVAAKG---HD-PQ----------------EEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       198 sn~~----~~~~~ll~~~~~~LkpgG~l~~~~g---~~-~~----------------~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      ++.+    .+...+++++.++|||||++++...   .. ..                ....++.+.++..||..+++.
T Consensus       152 ~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~  229 (272)
T PRK11873        152 SNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ  229 (272)
T ss_pred             EcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence            9853    4678899999999999999997421   00 00                012345667778899887664

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.67  E-value=3.2e-15  Score=137.81  Aligned_cols=179  Identities=17%  Similarity=0.166  Sum_probs=126.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcC-cCceee---cChHHHHHhhhh-hccccCCCCccccccccCCCCCCCCeEEEEc
Q 022962           55 HFETLNTRQQEQIHLYVDALLQWNRK-MNLTAV---KDVNEVMERHID-DSLAIIPPIKNSYTSHCDSSCNSNLKLVDVG  129 (289)
Q Consensus        55 ~~~~~~~~~~~~l~~~~~~l~~~n~~-~~l~~~---~~~~~~~~~~~~-~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiG  129 (289)
                      ...++++++.+.+......+..|.+. ..+..+   +.+..++.-..+ ..+.   +            + ++.+|||||
T Consensus        67 ~~~~~~~~~~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~---~------------l-~g~~VLDIG  130 (322)
T PRK15068         67 SEEPLSEGQRKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLS---P------------L-KGRTVLDVG  130 (322)
T ss_pred             cCCCCCHHHHHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhC---C------------C-CCCEEEEec
Confidence            45678899999999888888887554 233222   233444432222 1111   1            1 378999999


Q ss_pred             CCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC----cccH
Q 022962          130 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEM  204 (289)
Q Consensus       130 cG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~  204 (289)
                      ||+|..+..++...+ ..|+|+|+|+.++..++...+..+. .+++++.+|+++++.    +++||+|+|+.    ..++
T Consensus       131 CG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~----~~~FD~V~s~~vl~H~~dp  205 (322)
T PRK15068        131 CGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA----LKAFDTVFSMGVLYHRRSP  205 (322)
T ss_pred             cCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC----cCCcCEEEECChhhccCCH
Confidence            999999999987743 4799999999998766554444432 379999999998864    37899999985    3578


Q ss_pred             HHHHHHHccccccCeEEEEEE----cCC-----cH------------HHHHHHHHHHHHhCCeEeEEeeee
Q 022962          205 RILAEYCLPLVRVGGLFVAAK----GHD-----PQ------------EEVKNSERAVQLMGASLLQLCSVE  254 (289)
Q Consensus       205 ~~ll~~~~~~LkpgG~l~~~~----g~~-----~~------------~ei~~~~~~l~~~g~~~~~~~~~~  254 (289)
                      ..+++++++.|+|||.+++..    +..     ..            ....++...++++||..+++....
T Consensus       206 ~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~  276 (322)
T PRK15068        206 LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVS  276 (322)
T ss_pred             HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCC
Confidence            899999999999999998752    111     01            123456778889999988887553

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.67  E-value=1.6e-15  Score=135.03  Aligned_cols=130  Identities=24%  Similarity=0.251  Sum_probs=98.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .++.+|||+|||+|.+++.+++. ...+|+|+|+|+.+++.|++|++.+++. ++.+..++           .+||+|++
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----------~~fD~Vva  185 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----------LKADVIVA  185 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----------CCcCEEEE
Confidence            45889999999999999887654 4457999999999999999999988873 34432221           26999999


Q ss_pred             cCcc-cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962          199 RAVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       199 n~~~-~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      |... .+..+++++.++|||||++++. |. ..++...+.+.++..||.+.+..      ..+++..++++|
T Consensus       186 ni~~~~~~~l~~~~~~~LkpgG~lils-gi-~~~~~~~v~~~l~~~Gf~~~~~~------~~~~W~~~~~~~  249 (250)
T PRK00517        186 NILANPLLELAPDLARLLKPGGRLILS-GI-LEEQADEVLEAYEEAGFTLDEVL------ERGEWVALVGKK  249 (250)
T ss_pred             cCcHHHHHHHHHHHHHhcCCCcEEEEE-EC-cHhhHHHHHHHHHHCCCEEEEEE------EeCCEEEEEEEe
Confidence            9755 4678899999999999999874 32 23344556677889999887764      236677777765

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.67  E-value=1.8e-15  Score=135.02  Aligned_cols=99  Identities=20%  Similarity=0.290  Sum_probs=86.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||+|||+|..+..++..  +.+|+|+|+|++|++.|+++++..++ .+++++++|+.++...  .+++||+|+++.
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~--~~~~fD~V~~~~  120 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH--LETPVDLILFHA  120 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh--cCCCCCEEEehh
Confidence            679999999999999999875  57999999999999999999998886 4799999999887421  247899999985


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEE
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                          +.++..+++++.++|||||.+++.
T Consensus       121 vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        121 VLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             HHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence                357789999999999999999865

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.66  E-value=3.3e-16  Score=117.20  Aligned_cols=91  Identities=20%  Similarity=0.239  Sum_probs=76.3

Q ss_pred             EEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC----c
Q 022962          126 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----V  201 (289)
Q Consensus       126 LDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~  201 (289)
                      ||+|||+|..+..++.. +..+|+++|+|+++++.+++.....   ++.+.++|+++++.+   +++||+|+++.    .
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~---~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFP---DNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS----TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccc---cccccccccccceeec
Confidence            89999999999999977 7899999999999999998866543   466999999999764   48999999984    4


Q ss_pred             ccHHHHHHHHccccccCeEEEE
Q 022962          202 AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       202 ~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      .+...+++++.++|||||++++
T Consensus        74 ~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHcCcCeEEeC
Confidence            5789999999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.66  E-value=2.1e-15  Score=131.69  Aligned_cols=126  Identities=13%  Similarity=0.082  Sum_probs=102.2

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC--
Q 022962          124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA--  200 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--  200 (289)
                      +|||||||+|.++..++..+++.+|+|+|+|+.+++.++++++..++. +++++..|+.+.+.    .++||+|++..  
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~----~~~fD~I~~~~~l   77 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF----PDTYDLVFGFEVI   77 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC----CCCCCEeehHHHH
Confidence            799999999999999998888899999999999999999999888875 59999999865532    36899999873  


Q ss_pred             --cccHHHHHHHHccccccCeEEEEEEcCC------c-------HHHHHHHHHHHHHhCCeEeEEeee
Q 022962          201 --VAEMRILAEYCLPLVRVGGLFVAAKGHD------P-------QEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       201 --~~~~~~ll~~~~~~LkpgG~l~~~~g~~------~-------~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                        +.+...+++.+.++|+|||++++..-..      .       .....++.+.+...||.+.+...+
T Consensus        78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~  145 (224)
T smart00828       78 HHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA  145 (224)
T ss_pred             HhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence              5678899999999999999999753110      0       111344566778999999887654

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.65  E-value=1e-14  Score=134.64  Aligned_cols=126  Identities=21%  Similarity=0.221  Sum_probs=100.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||||||+|.+++.++...++.+|+++|+|+.|++.|+++..   ..+++++++|+++++..   +++||+|+++. 
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~---~~sFDvVIs~~~  187 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFP---TDYADRYVSAGS  187 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCC---CCceeEEEEcCh
Confidence            679999999999999999888777899999999999999998754   34688999999987643   36899999974 


Q ss_pred             ---cccHHHHHHHHccccccCeEEEEEEcCCc--------------HHHHHHHHHHHHHhCCeEeEEeee
Q 022962          201 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDP--------------QEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       201 ---~~~~~~ll~~~~~~LkpgG~l~~~~g~~~--------------~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                         ..+...+++++.++|+|||++++......              ....+++.+.+++.||+.+++..+
T Consensus       188 L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i  257 (340)
T PLN02490        188 IEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRI  257 (340)
T ss_pred             hhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEc
Confidence               44678899999999999999987532110              001244566778999998888754

>PRK14968 putative methyltransferase; Provisional

Probab=99.64  E-value=9.9e-15  Score=123.50  Aligned_cols=123  Identities=15%  Similarity=0.196  Sum_probs=97.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC--EEEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n--i~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+|||+|||+|.+++.++..  +.+|+|+|+|+++++.++++++.++..+  +.++++|+.+...    +++||+|++
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~d~vi~   96 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR----GDKFDVILF   96 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc----ccCceEEEE
Confidence            4779999999999999999876  6899999999999999999999888765  8899988766322    247999999


Q ss_pred             cCc-------------------------ccHHHHHHHHccccccCeEEEEEEcCC-cHHHHHHHHHHHHHhCCeEeEEee
Q 022962          199 RAV-------------------------AEMRILAEYCLPLVRVGGLFVAAKGHD-PQEEVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       199 n~~-------------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~-~~~ei~~~~~~l~~~g~~~~~~~~  252 (289)
                      |..                         ..+..+++++.++|+|||.+++..+.. ..++   +.+.+.++||++..+..
T Consensus        97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~---l~~~~~~~g~~~~~~~~  173 (188)
T PRK14968         97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDE---VLEYLEKLGFEAEVVAE  173 (188)
T ss_pred             CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHH---HHHHHHHCCCeeeeeee
Confidence            831                         124678999999999999998876543 2333   44567789998776653

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.63  E-value=2e-15  Score=134.18  Aligned_cols=100  Identities=14%  Similarity=0.196  Sum_probs=85.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ++.+|||||||+|..++.++..  .|+++|+|+|+|+.|++.|++++...+.. +++++++|+.+++.     ..+|+|+
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~vv  130 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----ENASMVV  130 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----CCCCEEe
Confidence            3679999999999999888874  57899999999999999999999887764 69999999988754     3589999


Q ss_pred             EcCc------ccHHHHHHHHccccccCeEEEEEE
Q 022962          198 ARAV------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       198 sn~~------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ++..      .....+++++++.|||||.|++..
T Consensus       131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            8731      235789999999999999998854

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.63  E-value=4.5e-15  Score=133.14  Aligned_cols=129  Identities=15%  Similarity=0.154  Sum_probs=99.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +.++.+|||||||+|.++..++..+ +++|+|+|+|+.+++.|+++...  ..+++++++|+.+.+.+   +++||+|++
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~---~~~FD~V~s  123 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDFP---ENTFDMIYS  123 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCCC---CCCeEEEEE
Confidence            3457899999999999999988764 67999999999999999987654  24799999999876543   378999999


Q ss_pred             cC----c--ccHHHHHHHHccccccCeEEEEEEcC-----CcHHH--------------HHHHHHHHHHhCCeEeEEeee
Q 022962          199 RA----V--AEMRILAEYCLPLVRVGGLFVAAKGH-----DPQEE--------------VKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       199 n~----~--~~~~~ll~~~~~~LkpgG~l~~~~g~-----~~~~e--------------i~~~~~~l~~~g~~~~~~~~~  253 (289)
                      +.    .  .+...+++++.++|||||++++....     ...++              ..+..+.++.+||..++....
T Consensus       124 ~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~  203 (263)
T PTZ00098        124 RDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDI  203 (263)
T ss_pred             hhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeC
Confidence            63    1  36789999999999999999976421     11111              134556778889988776543

>PLN03075 nicotianamine synthase; Provisional

Probab=99.63  E-value=8.9e-15  Score=132.01  Aligned_cols=145  Identities=17%  Similarity=0.112  Sum_probs=105.9

Q ss_pred             CCCeEEEEcCCCChH-HHHHH-HHCCCCEEEEEeCChHHHHHHHHHHHH-cCCC-CEEEEeccccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLP-GLVLA-IACPDWKVTLLESMNKRCVFLEHAVSL-TQLL-NVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~-~l~la-~~~p~~~V~~iD~s~~~l~~a~~~~~~-~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      .+.+|+|||||.|-+ ++.++ ..+|+++++++|+|+++++.|++.++. .++. +|+|..+|+.+....   .+.||+|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~---l~~FDlV  199 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES---LKEYDVV  199 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc---cCCcCEE
Confidence            478999999997733 44444 457999999999999999999999965 7775 499999999876321   2679999


Q ss_pred             EEcCc-----ccHHHHHHHHccccccCeEEEEEEcCCcHHHHH-HHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962          197 VARAV-----AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVK-NSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  270 (289)
Q Consensus       197 ~sn~~-----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~-~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~  270 (289)
                      ++++.     .+...+++.+.+.|+|||.+++-.+. ....+- ....-....||+...+   .+|..+--...|+++|.
T Consensus       200 F~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~-G~r~~LYp~v~~~~~~gf~~~~~---~~P~~~v~Nsvi~~r~~  275 (296)
T PLN03075        200 FLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAH-GARAFLYPVVDPCDLRGFEVLSV---FHPTDEVINSVIIARKP  275 (296)
T ss_pred             EEecccccccccHHHHHHHHHHhcCCCcEEEEeccc-chHhhcCCCCChhhCCCeEEEEE---ECCCCCceeeEEEEEee
Confidence            99963     57899999999999999999986532 211110 0000011238865443   47877777888888887


Q ss_pred             CC
Q 022962          271 RR  272 (289)
Q Consensus       271 ~~  272 (289)
                      ..
T Consensus       276 ~~  277 (296)
T PLN03075        276 GG  277 (296)
T ss_pred             cC
Confidence            53

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.63  E-value=2.8e-15  Score=133.81  Aligned_cols=94  Identities=21%  Similarity=0.203  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++...|+.+|+|+|+|+.|++.|++.       +++++++|++++..    .++||+|+|+.
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~----~~~fD~v~~~~   97 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP----KPDTDVVVSNA   97 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC----CCCceEEEEeh
Confidence            37899999999999999999888889999999999999988762       57899999987642    36899999985


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEE
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                          +.+...++++++++|||||.+++..
T Consensus        98 ~l~~~~d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         98 ALQWVPEHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             hhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence                4578899999999999999999854

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.63  E-value=2.8e-15  Score=140.22  Aligned_cols=100  Identities=14%  Similarity=0.141  Sum_probs=85.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC---CEEEEeccccccCCCCcCCCCceEEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL---NVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~---ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +.+|||+|||+|.+++.++..+|..+|+++|+|+.+++.+++|++.++.+   +++++.+|..+...    +++||+|+|
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~----~~~fDlIls  304 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE----PFRFNAVLC  304 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC----CCCEEEEEE
Confidence            46999999999999999999999999999999999999999999888643   68999888754321    257999999


Q ss_pred             cCc---------ccHHHHHHHHccccccCeEEEEEE
Q 022962          199 RAV---------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       199 n~~---------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      |..         .....+++.+.++|+|||.|+++.
T Consensus       305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            942         124688999999999999999885

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.62  E-value=7.3e-15  Score=132.26  Aligned_cols=99  Identities=16%  Similarity=0.177  Sum_probs=79.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +++|.+|||||||.|.+++.+|+.+ +++|+||.+|++..+.+++.+++.|+. ++++...|..+++      .+||.|+
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------~~fD~Iv  132 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------GKFDRIV  132 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------S-SEEE
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------CCCCEEE
Confidence            4469999999999999999999987 789999999999999999999999986 4999999988764      4899999


Q ss_pred             EcC------cccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARA------VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~------~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |-.      ..+++.+++.+.++|||||++++.
T Consensus       133 Si~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen  133 SIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             EESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred             EEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            973      257899999999999999999854

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.62  E-value=4e-15  Score=132.90  Aligned_cols=100  Identities=17%  Similarity=0.222  Sum_probs=90.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      .+++|++|||||||.|.+++.+|+.+ +.+|+|+++|+++.+.+++.++..|++ +|++...|..++.      ++||-|
T Consensus        69 ~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~------e~fDrI  141 (283)
T COG2230          69 GLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE------EPFDRI  141 (283)
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc------ccccee
Confidence            35579999999999999999999988 899999999999999999999999997 7999999998874      569999


Q ss_pred             EEcC------cccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARA------VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~------~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|-.      ..+++.+++.+.++|+|||.+++-
T Consensus       142 vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh  175 (283)
T COG2230         142 VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLH  175 (283)
T ss_pred             eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEE
Confidence            9973      456999999999999999999864

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=1.2e-14  Score=130.27  Aligned_cols=100  Identities=19%  Similarity=0.257  Sum_probs=86.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||+|||.|.+|+.+|+..|..+|+.+|+|..+++.+++|++.+++++..+..+|+.+-.     .++||+|+||+ 
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-----~~kfd~IisNPP  233 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-----EGKFDLIISNPP  233 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-----cccccEEEeCCC
Confidence            459999999999999999999999999999999999999999999999988767777776532     25899999994 


Q ss_pred             ----ccc----HHHHHHHHccccccCeEEEEEEc
Q 022962          201 ----VAE----MRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       201 ----~~~----~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                          ...    -.+++..+.+.|++||.|+++..
T Consensus       234 fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         234 FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence                122    35899999999999999998764

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.61  E-value=1.7e-15  Score=132.28  Aligned_cols=95  Identities=20%  Similarity=0.289  Sum_probs=80.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC------CEEEEeccccccCCCCcCCCCceE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL------NVQIVRGRAETLGKDVSFREQYDV  195 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~------ni~~~~~d~~~~~~~~~~~~~fD~  195 (289)
                      |.+|||+|||+|.++..||+.  +++|+|||++++|++.|++.+......      .+++.+.++++..      ++||.
T Consensus        90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~~fDa  161 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------GKFDA  161 (282)
T ss_pred             CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------cccce
Confidence            678999999999999999987  689999999999999999985443321      2566777777653      56999


Q ss_pred             EEEcC----cccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARA----VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~----~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+|..    ++++..+++.+.+.|||||.+++.
T Consensus       162 VvcsevleHV~dp~~~l~~l~~~lkP~G~lfit  194 (282)
T KOG1270|consen  162 VVCSEVLEHVKDPQEFLNCLSALLKPNGRLFIT  194 (282)
T ss_pred             eeeHHHHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence            99985    678999999999999999999964

>PRK14967 putative methyltransferase; Provisional

Probab=99.61  E-value=1.6e-14  Score=126.48  Aligned_cols=122  Identities=18%  Similarity=0.195  Sum_probs=94.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.+++|++.++. +++++++|+.+...    +++||+|++|.
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~----~~~fD~Vi~np  109 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVE----FRPFDVVVSNP  109 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhcc----CCCeeEEEECC
Confidence            4689999999999999998865 445999999999999999999998887 68899999876422    36899999983


Q ss_pred             c-------------------------ccHHHHHHHHccccccCeEEEEEEcCC-cHHHHHHHHHHHHHhCCeEeEEe
Q 022962          201 V-------------------------AEMRILAEYCLPLVRVGGLFVAAKGHD-PQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 ~-------------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~-~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      .                         ..+..+++++.++|||||++++..... ...   ++.+.++..|+.+....
T Consensus       110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~---~~~~~l~~~g~~~~~~~  183 (223)
T PRK14967        110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVE---RTLTRLSEAGLDAEVVA  183 (223)
T ss_pred             CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHH---HHHHHHHHCCCCeEEEE
Confidence            1                         014678899999999999999876543 333   34455667888655443

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.61  E-value=5.9e-14  Score=122.97  Aligned_cols=100  Identities=22%  Similarity=0.223  Sum_probs=85.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++...+.. +++++.+|+.+.+..   .++||+|+++
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~I~~~  128 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP---DNSFDAVTIA  128 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC---CCCccEEEEe
Confidence            67999999999999999998876 689999999999999999988765543 599999999886542   3689999986


Q ss_pred             C----cccHHHHHHHHccccccCeEEEEE
Q 022962          200 A----VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ~----~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .    ..+...+++.+.++|+|||.+++.
T Consensus       129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~  157 (239)
T PRK00216        129 FGLRNVPDIDKALREMYRVLKPGGRLVIL  157 (239)
T ss_pred             cccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence            3    457889999999999999999875

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.61  E-value=4.4e-15  Score=116.26  Aligned_cols=103  Identities=18%  Similarity=0.192  Sum_probs=85.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      |.+|||+|||+|.+++.+++.. ..+++|+|+++.+++.++.++..+++ ++++++++|+.+.... ...++||+|++|.
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~~~D~Iv~np   78 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP-LPDGKFDLIVTNP   78 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT-CTTT-EEEEEE--
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh-ccCceeEEEEECC
Confidence            4589999999999999999886 78999999999999999999999987 4799999999987521 1247899999993


Q ss_pred             c------------ccHHHHHHHHccccccCeEEEEEEc
Q 022962          201 V------------AEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       201 ~------------~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      .            .....+++.+.++|+|||.+++..+
T Consensus        79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            1            1357899999999999999998753

...

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.61  E-value=5e-15  Score=127.13  Aligned_cols=96  Identities=18%  Similarity=0.210  Sum_probs=80.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||+|||+|..++.+|..  +.+|+|+|+|+.+++.++++++..+++ +++...|+...+.    +++||+|+++.+
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~----~~~fD~I~~~~~  103 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAAL----NEDYDFIFSTVV  103 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhccc----cCCCCEEEEecc
Confidence            569999999999999999974  679999999999999999998888874 7888888765433    367999998742


Q ss_pred             ------ccHHHHHHHHccccccCeEEEEE
Q 022962          202 ------AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       202 ------~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                            .+...+++.+.++|+|||++++.
T Consensus       104 ~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       104 FMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             cccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                  35678999999999999996654

Part of a tellurite-reducing operon tehA and tehB

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.60  E-value=1.1e-14  Score=130.05  Aligned_cols=96  Identities=20%  Similarity=0.228  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..+|+.+|+|+|+|+.+++.++++     ..+++++.+|+.++..    .++||+|+++.
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~-----~~~~~~~~~d~~~~~~----~~~fD~v~~~~  101 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR-----LPDCQFVEADIASWQP----PQALDLIFANA  101 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh-----CCCCeEEECchhccCC----CCCccEEEEcc
Confidence            47899999999999999999888889999999999999999875     3468899999987643    26899999985


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEE
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                          +.+...+++++.++|||||.+++..
T Consensus       102 ~l~~~~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        102 SLQWLPDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             ChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence                3477899999999999999998864

>PTZ00146 fibrillarin; Provisional

Probab=99.60  E-value=5.9e-14  Score=126.30  Aligned_cols=147  Identities=16%  Similarity=0.159  Sum_probs=100.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ++++.+|||+|||+|.++..+|... +...|+|||+++++.+.+.+.++..  .||.++.+|+..........++||+|+
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~  207 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIF  207 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEE
Confidence            3458899999999999999999876 4579999999998775555544432  589999999864210001125799999


Q ss_pred             EcCc-c-cHHHHHHHHccccccCeEEEEEE-------cCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceE-EEEE
Q 022962          198 ARAV-A-EMRILAEYCLPLVRVGGLFVAAK-------GHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRT-AVVC  267 (289)
Q Consensus       198 sn~~-~-~~~~ll~~~~~~LkpgG~l~~~~-------g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~-lv~~  267 (289)
                      +... . +...++.++.++|||||.|++..       ++...+.+.+-.+.+++.||++++...+   .++...+ +|+.
T Consensus       208 ~Dva~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L---~Py~~~h~~v~~  284 (293)
T PTZ00146        208 ADVAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTL---EPFERDHAVVIG  284 (293)
T ss_pred             EeCCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEec---CCccCCcEEEEE
Confidence            9742 2 34466778999999999999842       2223333443346688899998888755   2343333 4444


Q ss_pred             Eec
Q 022962          268 LKS  270 (289)
Q Consensus       268 ~k~  270 (289)
                      ..+
T Consensus       285 ~~~  287 (293)
T PTZ00146        285 VYR  287 (293)
T ss_pred             EEc
Confidence            443

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.60  E-value=7.9e-15  Score=127.70  Aligned_cols=103  Identities=23%  Similarity=0.301  Sum_probs=85.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .++.+|||||||+|..+..+|...+ +.+|+++|+++.+++.|+++++.++++|++++++|+.+....   ..+||+|++
T Consensus        76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~---~~~fD~Ii~  152 (215)
T TIGR00080        76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP---LAPYDRIYV  152 (215)
T ss_pred             CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc---cCCCCEEEE
Confidence            3578999999999999999998754 578999999999999999999999998999999999765322   258999998


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEEEcC
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      ++..  ..+.+.+.+.|+|||++++..+.
T Consensus       153 ~~~~--~~~~~~~~~~L~~gG~lv~~~~~  179 (215)
T TIGR00080       153 TAAG--PKIPEALIDQLKEGGILVMPVGE  179 (215)
T ss_pred             cCCc--ccccHHHHHhcCcCcEEEEEEcC
Confidence            7532  33445667889999999987653

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.60  E-value=1.1e-14  Score=126.65  Aligned_cols=104  Identities=19%  Similarity=0.281  Sum_probs=84.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.++.+|||||||+|..+..++... +..+|+++|+++++++.++++++.++.+|++++++|..+....   ..+||+|+
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~---~~~fD~I~  150 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE---NAPYDRIY  150 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc---CCCcCEEE
Confidence            3458899999999999999998775 4579999999999999999999999998999999998764332   36899999


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEEEcC
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      +.+..  ..+.+.+.+.|||||++++..+.
T Consensus       151 ~~~~~--~~~~~~l~~~LkpgG~lvi~~~~  178 (212)
T PRK13942        151 VTAAG--PDIPKPLIEQLKDGGIMVIPVGS  178 (212)
T ss_pred             ECCCc--ccchHHHHHhhCCCcEEEEEEcC
Confidence            87532  22344566789999999987653

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.60  E-value=3e-15  Score=114.68  Aligned_cols=91  Identities=23%  Similarity=0.295  Sum_probs=75.3

Q ss_pred             EEEEcCCCChHHHHHHHHC---CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-C
Q 022962          125 LVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-A  200 (289)
Q Consensus       125 VLDiGcG~G~~~l~la~~~---p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn-~  200 (289)
                      |||+|||+|..+..++..+   |..+++|+|+|++|++.++++....+. +++++++|+.+++..   .++||+|++. .
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~---~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFS---DGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHH---SSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCccc---CCCeeEEEEcCC
Confidence            7999999999999999876   458999999999999999999888776 799999999998643   4799999994 3


Q ss_pred             ------cccHHHHHHHHccccccCe
Q 022962          201 ------VAEMRILAEYCLPLVRVGG  219 (289)
Q Consensus       201 ------~~~~~~ll~~~~~~LkpgG  219 (289)
                            ......+++++.++|+|||
T Consensus        77 ~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence                  2357899999999999998

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.59  E-value=2.5e-14  Score=130.03  Aligned_cols=123  Identities=19%  Similarity=0.186  Sum_probs=93.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|+..+++.+ +.+..++....     .+++||+|++
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-----~~~~fDlVva  231 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-----IEGKADVIVA  231 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-----cCCCceEEEE
Confidence            35789999999999999888754 55799999999999999999999988763 66666653322     1368999999


Q ss_pred             cCcc-cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          199 RAVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       199 n~~~-~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      |... .+..+++.+.++|||||++++ .|.. ..+..++.+.++.. |.+.++.
T Consensus       232 n~~~~~l~~ll~~~~~~LkpgG~li~-sgi~-~~~~~~v~~~~~~~-f~~~~~~  282 (288)
T TIGR00406       232 NILAEVIKELYPQFSRLVKPGGWLIL-SGIL-ETQAQSVCDAYEQG-FTVVEIR  282 (288)
T ss_pred             ecCHHHHHHHHHHHHHHcCCCcEEEE-EeCc-HhHHHHHHHHHHcc-CceeeEe
Confidence            9765 456899999999999999986 3432 23334455556555 7766553

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.59  E-value=1e-14  Score=132.41  Aligned_cols=96  Identities=20%  Similarity=0.261  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||+|||+|..++.+|..  +.+|+|+|+|+.+++.++++++..++ ++++...|+.+...    +++||+|+++.+
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~----~~~fD~I~~~~v  193 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI----QEEYDFILSTVV  193 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc----cCCccEEEEcch
Confidence            459999999999999999874  68999999999999999999999888 79999888876543    478999999853


Q ss_pred             ------ccHHHHHHHHccccccCeEEEEE
Q 022962          202 ------AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       202 ------~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                            ..+..+++.+.++|+|||++++.
T Consensus       194 l~~l~~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        194 LMFLNRERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                  35788999999999999997654

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.59  E-value=2.3e-14  Score=123.91  Aligned_cols=101  Identities=20%  Similarity=0.311  Sum_probs=83.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+|||+|||+|..+..++...+ .++|+++|+++++++.|+++++.++.. +++++++|..+....   ..+||+|++
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~---~~~fD~Ii~  148 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK---HAPFDAIIV  148 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc---CCCccEEEE
Confidence            478999999999999999987764 579999999999999999999998875 599999999764322   368999999


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEEEc
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      +...  ..+.+++.+.|+|||++++..+
T Consensus       149 ~~~~--~~~~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        149 TAAA--STIPSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             ccCc--chhhHHHHHhcCcCcEEEEEEc
Confidence            8643  2344677889999999988654

>TIGR00740 methyltransferase, putative

Probab=99.58  E-value=1.7e-14  Score=127.49  Aligned_cols=99  Identities=11%  Similarity=0.140  Sum_probs=84.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +.+|||+|||+|..+..+++..  |+++|+|+|+|+.|++.|+++++..+. .+++++++|+.+++.     ..+|+|++
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~d~v~~  128 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASMVIL  128 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----CCCCEEee
Confidence            6799999999999999998763  789999999999999999999887664 369999999998764     35899998


Q ss_pred             cCc------ccHHHHHHHHccccccCeEEEEEE
Q 022962          199 RAV------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       199 n~~------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +..      .+...+++++.++|+|||.+++..
T Consensus       129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence            732      245789999999999999999864

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.57  E-value=7.6e-16  Score=117.38  Aligned_cols=95  Identities=19%  Similarity=0.181  Sum_probs=65.0

Q ss_pred             EEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC----c
Q 022962          126 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----V  201 (289)
Q Consensus       126 LDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~  201 (289)
                      ||||||+|.++..++..+|..+++|+|+|+.|++.++++....+..+...+..+..+.... ...++||+|++..    +
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY-DPPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C-CC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc-ccccccceehhhhhHhhh
Confidence            7999999999999999989999999999999999999988887765555555554443221 1125899999984    4


Q ss_pred             ccHHHHHHHHccccccCeEE
Q 022962          202 AEMRILAEYCLPLVRVGGLF  221 (289)
Q Consensus       202 ~~~~~ll~~~~~~LkpgG~l  221 (289)
                      .+++.+++.+.++|+|||.|
T Consensus        80 ~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhHHHHHHHHHHHcCCCCCC
Confidence            67899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK05785 hypothetical protein; Provisional

Probab=99.57  E-value=7.2e-14  Score=122.67  Aligned_cols=128  Identities=13%  Similarity=0.066  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHHHHHHHCCC
Q 022962           66 QIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPD  145 (289)
Q Consensus        66 ~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l~la~~~p~  145 (289)
                      .+..+++.+.......|-....+....|.+.+...+....              .++.+|||||||||.++..++... +
T Consensus        10 ~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~--------------~~~~~VLDlGcGtG~~~~~l~~~~-~   74 (226)
T PRK05785         10 ELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYC--------------GRPKKVLDVAAGKGELSYHFKKVF-K   74 (226)
T ss_pred             HHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhc--------------CCCCeEEEEcCCCCHHHHHHHHhc-C
Confidence            3445555555444444432223444556665554332211              126799999999999999998776 5


Q ss_pred             CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC----cccHHHHHHHHccccccCe
Q 022962          146 WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGG  219 (289)
Q Consensus       146 ~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~~~ll~~~~~~LkpgG  219 (289)
                      .+|+|+|+|++|++.|++.        ..++++|+++++..   +++||+|+++.    +.+++.+++++.++|||.+
T Consensus        75 ~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~---d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785         75 YYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFR---DKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             CEEEEECCCHHHHHHHHhc--------cceEEechhhCCCC---CCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence            7999999999999998763        13568899888654   47999999973    5688999999999999953

>PRK08317 hypothetical protein; Provisional

Probab=99.57  E-value=1.2e-13  Score=120.72  Aligned_cols=101  Identities=21%  Similarity=0.238  Sum_probs=85.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.++..++..+ |..+|+|+|+|+.+++.++++... ...++++..+|+.+.+..   +++||+|+++
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~---~~~~D~v~~~   94 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFP---DGSFDAVRSD   94 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCC---CCCceEEEEe
Confidence            47899999999999999999877 678999999999999999987333 234799999999876543   3689999997


Q ss_pred             C----cccHHHHHHHHccccccCeEEEEEE
Q 022962          200 A----VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .    ..+...+++.+.++|+|||.+++..
T Consensus        95 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         95 RVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             chhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            4    4578899999999999999998754

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.56  E-value=4.3e-14  Score=130.77  Aligned_cols=125  Identities=14%  Similarity=0.025  Sum_probs=100.6

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..+++.+|||.|||+|.+++.++..  +.+|+|+|+|++|+..++.|++.++++++.++++|+.+++..   +++||+|+
T Consensus       179 ~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~---~~~~D~Iv  253 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS---SESVDAIA  253 (329)
T ss_pred             CCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc---cCCCCEEE
Confidence            3456889999999999998886653  689999999999999999999999998899999999987653   36899999


Q ss_pred             EcCc-------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          198 ARAV-------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       198 sn~~-------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      +|+.             .-+..+++.+.++|+|||++++......  ++   .+.++.+|| ++..+..
T Consensus       254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~---~~~~~~~g~-i~~~~~~  316 (329)
T TIGR01177       254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DL---ESLAEDAFR-VVKRFEV  316 (329)
T ss_pred             ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CH---HHHHhhcCc-chheeee
Confidence            9831             1257899999999999999998775432  22   234568899 7776654

This family is found exclusively in the Archaea.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.56  E-value=2e-13  Score=118.40  Aligned_cols=99  Identities=22%  Similarity=0.306  Sum_probs=84.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||+|||+|..+..++...+. .+++++|+++.+++.++++..  ...+++++.+|+.+.+..   .++||+|+++.
T Consensus        40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~---~~~~D~i~~~~  114 (223)
T TIGR01934        40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFE---DNSFDAVTIAF  114 (223)
T ss_pred             CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCC---CCcEEEEEEee
Confidence            679999999999999999988775 799999999999999988765  334699999999887542   36899999873


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEE
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                          ..++..+++.+.+.|+|||++++..
T Consensus       115 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       115 GLRNVTDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             eeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence                5578899999999999999998743

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.56  E-value=2.9e-14  Score=132.24  Aligned_cols=99  Identities=18%  Similarity=0.250  Sum_probs=84.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      ..+|||+|||+|.+++.++...|..+|+++|+|+.+++.++++++.++++ .+++.+|+.+.     ..++||+|+||. 
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~-----~~~~fDlIvsNPP  270 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD-----IKGRFDMIISNPP  270 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc-----cCCCccEEEECCC
Confidence            45899999999999999999889899999999999999999999998874 57777777542     136899999994 


Q ss_pred             --------cccHHHHHHHHccccccCeEEEEEEc
Q 022962          201 --------VAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       201 --------~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                              ....+.+++++.+.|||||.+++...
T Consensus       271 FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        271 FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence                    12468999999999999999998764

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.55  E-value=6.5e-14  Score=119.20  Aligned_cols=96  Identities=20%  Similarity=0.187  Sum_probs=80.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.++||+|||.|..++.||..  +..|+|+|.|+.+++.+++.++..+++ |+....|+++...    ++.||+|+|.. 
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~~----~~~yD~I~st~v  103 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFDF----PEEYDFIVSTVV  103 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS-----TTTEEEEEEESS
T ss_pred             CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhccc----cCCcCEEEEEEE
Confidence            679999999999999999986  889999999999999999999998885 9999999988754    36899999852 


Q ss_pred             -----cccHHHHHHHHccccccCeEEEEE
Q 022962          201 -----VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       201 -----~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                           ...++.+++.+...++|||+++++
T Consensus       104 ~~fL~~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen  104 FMFLQRELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             GGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence                 235678999999999999998874

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.55  E-value=2.1e-14  Score=122.11  Aligned_cols=100  Identities=20%  Similarity=0.226  Sum_probs=87.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ...+|.|+|||+|..+-.|++.+|++.|+|+|.|++|++.|+.     .+.|++|..+|+.++..+    .++|++++|+
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-----rlp~~~f~~aDl~~w~p~----~~~dllfaNA  100 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-----RLPDATFEEADLRTWKPE----QPTDLLFANA  100 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH-----hCCCCceecccHhhcCCC----Cccchhhhhh
Confidence            3679999999999999999999999999999999999998865     355899999999998653    6899999998


Q ss_pred             c----ccHHHHHHHHccccccCeEEEEEEcCCc
Q 022962          201 V----AEMRILAEYCLPLVRVGGLFVAAKGHDP  229 (289)
Q Consensus       201 ~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~  229 (289)
                      +    .+...++......|.|||.+.+-+..+.
T Consensus       101 vlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~  133 (257)
T COG4106         101 VLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNL  133 (257)
T ss_pred             hhhhccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence            4    5678999999999999999998776543

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.55  E-value=2.2e-13  Score=130.89  Aligned_cols=144  Identities=12%  Similarity=0.024  Sum_probs=107.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC-CCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~-~~~fD~V~s  198 (289)
                      .++.+|||+|||+|.+++.+|..  ..+|+|+|+|+.|++.|++|++.++++|++++++|+.+......+ +++||+|++
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~  373 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL  373 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence            45789999999999999999976  369999999999999999999999998999999999764211011 357999999


Q ss_pred             cCc-ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEEEEe
Q 022962          199 RAV-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVVCLK  269 (289)
Q Consensus       199 n~~-~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~~~k  269 (289)
                      |.. ......++.+.+ ++|++.+++..++.  --..++ ..+.+.||.+.++..++ +|....-..+++++|
T Consensus       374 dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~--tlaRDl-~~L~~~gY~l~~i~~~DmFP~T~HvE~v~lL~r  442 (443)
T PRK13168        374 DPPRAGAAEVMQALAK-LGPKRIVYVSCNPA--TLARDA-GVLVEAGYRLKRAGMLDMFPHTGHVESMALFER  442 (443)
T ss_pred             CcCCcChHHHHHHHHh-cCCCeEEEEEeChH--HhhccH-HHHhhCCcEEEEEEEeccCCCCCcEEEEEEEEe
Confidence            952 234566666655 68999988876542  222222 23456799999999997 566555556666654

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.55  E-value=6.5e-13  Score=116.70  Aligned_cols=173  Identities=14%  Similarity=0.198  Sum_probs=118.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHH
Q 022962           58 TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGL  137 (289)
Q Consensus        58 ~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l  137 (289)
                      .++++|+..++.+.+++..  ..................+.....   +             .++.+|||||||+|.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~---~-------------~~~~~vLdiG~G~G~~~~   64 (233)
T PRK05134          3 NVDPAEIAKFSALAARWWD--PNGEFKPLHRINPLRLNYIREHAG---G-------------LFGKRVLDVGCGGGILSE   64 (233)
T ss_pred             cccHHHHHHHHHHHHHHhc--cCCCcHHHHHhhHHHHHHHHHhcc---C-------------CCCCeEEEeCCCCCHHHH
Confidence            4678899999999886652  222111112222221112222111   1             136799999999999998


Q ss_pred             HHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC----cccHHHHHHHHcc
Q 022962          138 VLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLP  213 (289)
Q Consensus       138 ~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~~~ll~~~~~  213 (289)
                      .+++.  ..+|+++|+++.+++.++++....+. +++++..++.+....  ..++||+|+++.    ..+...+++.+.+
T Consensus        65 ~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~  139 (233)
T PRK05134         65 SMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE--HPGQFDVVTCMEMLEHVPDPASFVRACAK  139 (233)
T ss_pred             HHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh--cCCCccEEEEhhHhhccCCHHHHHHHHHH
Confidence            88864  57899999999999999998887766 688888888876421  236899999863    4577889999999


Q ss_pred             ccccCeEEEEEEcCCcHH---------------------------HHHHHHHHHHHhCCeEeEEeee
Q 022962          214 LVRVGGLFVAAKGHDPQE---------------------------EVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       214 ~LkpgG~l~~~~g~~~~~---------------------------ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      +|+|||.+++........                           ...++.+.+++.||++++...+
T Consensus       140 ~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~  206 (233)
T PRK05134        140 LVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDITGL  206 (233)
T ss_pred             HcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeeeeE
Confidence            999999998754211000                           1134566778999998877544

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.53  E-value=1.3e-13  Score=128.81  Aligned_cols=104  Identities=16%  Similarity=0.110  Sum_probs=89.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +..+||||||+|..++.+|..+|+..++|+|+++.+++.+.+++...+++|+.++++|+..+... ..++++|.|+++-.
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~-~~~~s~D~I~lnFP  201 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL-LPSNSVEKIFVHFP  201 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-CCCCceeEEEEeCC
Confidence            56899999999999999999999999999999999999999999999999999999999765321 12478999999843


Q ss_pred             ccH----------HHHHHHHccccccCeEEEEEEc
Q 022962          202 AEM----------RILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       202 ~~~----------~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      .++          +.+++++.++|+|||.+.+...
T Consensus       202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD  236 (390)
T PRK14121        202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD  236 (390)
T ss_pred             CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence            322          6899999999999999998653

>PRK06922 hypothetical protein; Provisional

Probab=99.53  E-value=7.8e-14  Score=136.70  Aligned_cols=104  Identities=16%  Similarity=0.212  Sum_probs=87.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|..+..++..+|+.+|+|+|+|+.|++.|+++....+. ++.++++|+.+++.. ..+++||+|+++.
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~-fedeSFDvVVsn~  495 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSS-FEKESVDTIVYSS  495 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccc-cCCCCEEEEEEch
Confidence            47899999999999999999888999999999999999999988766554 688999999886521 0137899999873


Q ss_pred             c-----------------ccHHHHHHHHccccccCeEEEEEEc
Q 022962          201 V-----------------AEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       201 ~-----------------~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      .                 .+...+++++.++|||||.+++..+
T Consensus       496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            1                 2467899999999999999999765

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.51  E-value=2.4e-13  Score=120.83  Aligned_cols=94  Identities=17%  Similarity=0.177  Sum_probs=78.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||+|||+|.++..++..  +.+|+++|+|+.|++.++++..     .+.++++|+++++..   +++||+|+++. 
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~---~~~fD~V~s~~~  112 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLA---TATFDLAWSNLA  112 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCC---CCcEEEEEECch
Confidence            578999999999998888753  5799999999999999887532     356789999887643   36899999984 


Q ss_pred             ---cccHHHHHHHHccccccCeEEEEEE
Q 022962          201 ---VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ---~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                         ..++..++.++.++|+|||.+++..
T Consensus       113 l~~~~d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        113 VQWCGNLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             hhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence               3578899999999999999999864

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.51  E-value=1.3e-12  Score=125.65  Aligned_cols=130  Identities=18%  Similarity=0.168  Sum_probs=97.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..++.+|||+|||+|..++.++... +.++|+|+|+++.+++.+++|++.+|+++++++++|+.++...  +.++||+|+
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~--~~~~fD~Vl  325 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK--FAEKFDKIL  325 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch--hcccCCEEE
Confidence            4567899999999999999999875 5789999999999999999999999998899999999876421  236899999


Q ss_pred             EcCcc-------------------c-------HHHHHHHHccccccCeEEEEEEcCCcHHHHH-HHHHHHHHh-CCeEeE
Q 022962          198 ARAVA-------------------E-------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVK-NSERAVQLM-GASLLQ  249 (289)
Q Consensus       198 sn~~~-------------------~-------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~-~~~~~l~~~-g~~~~~  249 (289)
                      +++..                   +       ...+++.+.++|||||.+++..-....+|-. .+...++.+ +|+++.
T Consensus       326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~  405 (444)
T PRK14902        326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVP  405 (444)
T ss_pred             EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEec
Confidence            87410                   1       2468999999999999998654332222222 223344555 365544


Q ss_pred             E
Q 022962          250 L  250 (289)
Q Consensus       250 ~  250 (289)
                      +
T Consensus       406 ~  406 (444)
T PRK14902        406 L  406 (444)
T ss_pred             c
Confidence            3

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.50  E-value=4.4e-13  Score=122.77  Aligned_cols=101  Identities=14%  Similarity=0.169  Sum_probs=84.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.++.+|||||||+|.+++.+++.+|+.+++++|. +.+++.++++++..++. +++++.+|+.+...     ..+|+|+
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-----~~~D~v~  220 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-----PEADAVL  220 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-----CCCCEEE
Confidence            44578999999999999999999999999999997 78999999999999875 59999999876432     2379887


Q ss_pred             EcCc------ccHHHHHHHHccccccCeEEEEEE
Q 022962          198 ARAV------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       198 sn~~------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +..+      .....+++++++.|+|||++++..
T Consensus       221 ~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       221 FCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             eEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            5532      223579999999999999998763

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK04457 spermidine synthase; Provisional

Probab=99.50  E-value=5.4e-13  Score=119.63  Aligned_cols=119  Identities=13%  Similarity=0.158  Sum_probs=91.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||||||+|.++..++...|+.+|++||+++++++.|+++....+. ++++++++|+.++-..  ..++||+|++++
T Consensus        67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~--~~~~yD~I~~D~  144 (262)
T PRK04457         67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV--HRHSTDVILVDG  144 (262)
T ss_pred             CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh--CCCCCCEEEEeC
Confidence            5689999999999999999888999999999999999999998665443 5799999998775321  236899999875


Q ss_pred             ccc--------HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHh
Q 022962          201 VAE--------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLM  243 (289)
Q Consensus       201 ~~~--------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~  243 (289)
                      ...        ...+++.+.+.|+|||.+++..... ........+.++..
T Consensus       145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~-~~~~~~~l~~l~~~  194 (262)
T PRK04457        145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR-DKRYDRYLERLESS  194 (262)
T ss_pred             CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC-chhHHHHHHHHHHh
Confidence            321        3799999999999999999743221 22233444455443

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.49  E-value=4e-13  Score=116.57  Aligned_cols=100  Identities=22%  Similarity=0.269  Sum_probs=82.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .++.+|||+|||+|..+..++...  .+|+++|+++.+++.++++++.+++.+++++++|..+....   .++||+|+++
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~I~~~  151 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA---YAPFDRILVT  151 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc---CCCcCEEEEc
Confidence            357899999999999998888764  48999999999999999999999998899999998653221   2689999998


Q ss_pred             CcccHHHHHHHHccccccCeEEEEEEc
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      +..  ..+.+.+.+.|+|||.+++..+
T Consensus       152 ~~~--~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        152 AAA--PEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             cCc--hhhhHHHHHhcCCCcEEEEEEc
Confidence            532  3445667889999999998766

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.49  E-value=1.7e-13  Score=119.87  Aligned_cols=97  Identities=21%  Similarity=0.288  Sum_probs=83.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||+|||+|.++..++...+..+|+++|+++.++..+++...    ++++++.+|+++.+..   +++||+|+++. 
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~---~~~fD~vi~~~~  107 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLE---DSSFDLIVSNLA  107 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCC---CCceeEEEEhhh
Confidence            568999999999999999998888899999999999988877543    3788999999987643   36899999985 


Q ss_pred             ---cccHHHHHHHHccccccCeEEEEEE
Q 022962          201 ---VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ---~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                         ..+...+++.+.++|+|||.+++..
T Consensus       108 l~~~~~~~~~l~~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       108 LQWCDDLSQALSELARVLKPGGLLAFST  135 (240)
T ss_pred             hhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence               3478899999999999999999754

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.48  E-value=9.3e-13  Score=121.19  Aligned_cols=138  Identities=12%  Similarity=0.081  Sum_probs=101.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.+++.+|..  +.+|+|+|+|+.+++.|++|++.++++|++++++|+.++...  ..++||+|+++.
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~--~~~~~D~Vv~dP  248 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA--QGEVPDLVLVNP  248 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh--cCCCCeEEEECC
Confidence            3679999999999999999974  579999999999999999999999998899999999886431  135799999995


Q ss_pred             cc-c-HHHHHHHHccccccCeEEEEEEcCCc-HHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEEEEe
Q 022962          201 VA-E-MRILAEYCLPLVRVGGLFVAAKGHDP-QEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVVCLK  269 (289)
Q Consensus       201 ~~-~-~~~ll~~~~~~LkpgG~l~~~~g~~~-~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~~~k  269 (289)
                      .. . ...+++.+. .++|++.+++..++.. ..++.    .+  .|+++.++..++ +|....-..++++++
T Consensus       249 Pr~G~~~~~~~~l~-~~~~~~ivyvsc~p~t~~rd~~----~l--~~y~~~~~~~~DmFP~T~HvE~v~~l~r  314 (315)
T PRK03522        249 PRRGIGKELCDYLS-QMAPRFILYSSCNAQTMAKDLA----HL--PGYRIERVQLFDMFPHTAHYEVLTLLVR  314 (315)
T ss_pred             CCCCccHHHHHHHH-HcCCCeEEEEECCcccchhHHh----hc--cCcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence            32 1 123333333 3678888887665533 22322    23  589999999887 565555555666654

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.48  E-value=5.3e-13  Score=115.83  Aligned_cols=93  Identities=14%  Similarity=0.230  Sum_probs=71.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC-----CCcCCCCce
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-----DVSFREQYD  194 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~-----~~~~~~~fD  194 (289)
                      ++.+|||||||+|.++..+++.. +..+|+|||+++ +          ....+++++++|+.+...     .....++||
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D  119 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQ  119 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence            47799999999999999998875 457999999988 1          134579999999988530     001136899


Q ss_pred             EEEEcCcc--------c-------HHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVA--------E-------MRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~--------~-------~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+|+...        +       ...+++.+.++|+|||.|++.
T Consensus       120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            99997421        1       256889999999999999984

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.47  E-value=6e-13  Score=109.32  Aligned_cols=91  Identities=18%  Similarity=0.173  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..  +.+|+|+|+++.+++.          .++.....+..+...   .+++||+|+|+.
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~fD~i~~~~   86 (161)
T PF13489_consen   22 PGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPF---PDGSFDLIICND   86 (161)
T ss_dssp             TTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHC---HSSSEEEEEEES
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhc---cccchhhHhhHH
Confidence            4789999999999999888755  4499999999999877          233333333333222   247899999985


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEc
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                          +.++..+++.+.++|||||++++...
T Consensus        87 ~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~  116 (161)
T PF13489_consen   87 VLEHLPDPEEFLKELSRLLKPGGYLVISDP  116 (161)
T ss_dssp             SGGGSSHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred             HHhhcccHHHHHHHHHHhcCCCCEEEEEEc
Confidence                45789999999999999999998764

...

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.47  E-value=5.2e-13  Score=134.80  Aligned_cols=126  Identities=15%  Similarity=0.178  Sum_probs=99.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+|||+|||+|.+++.+|.. +..+|++||+|+.+++.|++|++.++++  +++++++|+.++...  ..++||+|++
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~--~~~~fDlIil  614 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE--AREQFDLIFI  614 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH--cCCCcCEEEE
Confidence            4789999999999999998864 4558999999999999999999999985  699999999775321  1368999999


Q ss_pred             cCc---------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEee
Q 022962          199 RAV---------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       199 n~~---------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~  252 (289)
                      ++.               .++..++..+.++|+|||.+++..........   .+.+...|+.+..+..
T Consensus       615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~  680 (702)
T PRK11783        615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITA  680 (702)
T ss_pred             CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEec
Confidence            841               24678899999999999999987665433222   4456678888776653

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.47  E-value=8.8e-13  Score=118.31  Aligned_cols=189  Identities=15%  Similarity=0.135  Sum_probs=130.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcC-cCceeec---ChHHHHHh-hhhhccccCCCCccccccccCCCCCCCCeEEEEc
Q 022962           55 HFETLNTRQQEQIHLYVDALLQWNRK-MNLTAVK---DVNEVMER-HIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVG  129 (289)
Q Consensus        55 ~~~~~~~~~~~~l~~~~~~l~~~n~~-~~l~~~~---~~~~~~~~-~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiG  129 (289)
                      ....+++++.+++..-...+.-|-++ +.+..+.   ++...|+= .+...+.               ++ .|.+|||||
T Consensus        60 ~~~~l~~~~~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~rl~p~l~---------------~L-~gk~VLDIG  123 (315)
T PF08003_consen   60 SASDLSAEQRQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWDRLLPHLP---------------DL-KGKRVLDIG  123 (315)
T ss_pred             CCCCCCHHHHHHHHHHHHhhCCcccCCcccCCEeecccccccchHHHHHhhhC---------------Cc-CCCEEEEec
Confidence            34567889999999999999988773 5554442   22222211 1111111               12 388999999


Q ss_pred             CCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcCc----ccH
Q 022962          130 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARAV----AEM  204 (289)
Q Consensus       130 cG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~~----~~~  204 (289)
                      ||+|+.+..++.. ....|+|+|.+...+...+...+-+|.++ +..+-..+++++.    .+.||+|+|.++    .++
T Consensus       124 C~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~----~~~FDtVF~MGVLYHrr~P  198 (315)
T PF08003_consen  124 CNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN----LGAFDTVFSMGVLYHRRSP  198 (315)
T ss_pred             CCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc----cCCcCEEEEeeehhccCCH
Confidence            9999999998876 45689999999987776666556666543 4444457777765    278999999975    477


Q ss_pred             HHHHHHHccccccCeEEEEEE----cCC-----------------cHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceE
Q 022962          205 RILAEYCLPLVRVGGLFVAAK----GHD-----------------PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRT  263 (289)
Q Consensus       205 ~~ll~~~~~~LkpgG~l~~~~----g~~-----------------~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~  263 (289)
                      -..+++++..|+|||.++++.    |..                 ..+.+..+...+++.||+.+++..+.....+.+|.
T Consensus       199 l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR~  278 (315)
T PF08003_consen  199 LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSPTTIEEQRK  278 (315)
T ss_pred             HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCccCCHHHhcc
Confidence            889999999999999999764    211                 11234556777889999999888775444445554


Q ss_pred             E
Q 022962          264 A  264 (289)
Q Consensus       264 l  264 (289)
                      .
T Consensus       279 T  279 (315)
T PF08003_consen  279 T  279 (315)
T ss_pred             C
Confidence            3

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=9.3e-13  Score=115.12  Aligned_cols=125  Identities=20%  Similarity=0.168  Sum_probs=103.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      +.++.+|+|.|+|||.++..||.. .|.++|+..|+.++.++.|++|.+..++.| |++..+|+.+....    +.||+|
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~----~~vDav  167 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE----EDVDAV  167 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc----cccCEE
Confidence            446999999999999999999975 477999999999999999999999999877 99999999887543    589999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                      +..-.+ +.+.++.+...|||||.++++.+.  .+.+.+..+.+++.||...+.
T Consensus       168 ~LDmp~-PW~~le~~~~~Lkpgg~~~~y~P~--veQv~kt~~~l~~~g~~~ie~  218 (256)
T COG2519         168 FLDLPD-PWNVLEHVSDALKPGGVVVVYSPT--VEQVEKTVEALRERGFVDIEA  218 (256)
T ss_pred             EEcCCC-hHHHHHHHHHHhCCCcEEEEEcCC--HHHHHHHHHHHHhcCccchhh
Confidence            987544 457899999999999999987653  445556666788888865543

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.47  E-value=2.1e-12  Score=112.58  Aligned_cols=129  Identities=18%  Similarity=0.258  Sum_probs=100.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||+|||+|.++..++..  ..+++++|+++.+++.+++++...+..++++.+.|+.+.....  .++||+|+++. 
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~i~~~~~  121 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG--AKSFDVVTCMEV  121 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC--CCCccEEEehhH
Confidence            679999999999999888865  4579999999999999999988877657999999988765421  36899999973 


Q ss_pred             ---cccHHHHHHHHccccccCeEEEEEEcCCcH-H--------------------------HHHHHHHHHHHhCCeEeEE
Q 022962          201 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDPQ-E--------------------------EVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       201 ---~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~-~--------------------------ei~~~~~~l~~~g~~~~~~  250 (289)
                         ..+...+++.+.++|+|||.+++....... .                          ...++.+.+++.||+++++
T Consensus       122 l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~  201 (224)
T TIGR01983       122 LEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV  201 (224)
T ss_pred             HHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence               567889999999999999998875421100 0                          0123556777899999887


Q ss_pred             eeee
Q 022962          251 CSVE  254 (289)
Q Consensus       251 ~~~~  254 (289)
                      ..+.
T Consensus       202 ~~~~  205 (224)
T TIGR01983       202 KGLV  205 (224)
T ss_pred             eeEE
Confidence            6543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.47  E-value=2.1e-12  Score=123.75  Aligned_cols=131  Identities=18%  Similarity=0.153  Sum_probs=98.5

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDV  195 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~  195 (289)
                      ...++.+|||+|||+|..++.++... +.++|+|+|+++.+++.+++|++.+|++||+++++|+.++.... ...++||.
T Consensus       249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~  328 (434)
T PRK14901        249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR  328 (434)
T ss_pred             CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence            34568899999999999999999875 45799999999999999999999999989999999998765211 11368999


Q ss_pred             EEEcCcc-------------------c-------HHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHh-CCeE
Q 022962          196 AVARAVA-------------------E-------MRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLM-GASL  247 (289)
Q Consensus       196 V~sn~~~-------------------~-------~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~-g~~~  247 (289)
                      |++++..                   +       ...+++.+.++|||||+++...-. ...+....+...++++ +|.+
T Consensus       329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~  408 (434)
T PRK14901        329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKL  408 (434)
T ss_pred             EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEe
Confidence            9986310                   0       368899999999999999865432 2223333344455565 5654


Q ss_pred             e
Q 022962          248 L  248 (289)
Q Consensus       248 ~  248 (289)
                      .
T Consensus       409 ~  409 (434)
T PRK14901        409 E  409 (434)
T ss_pred             c
Confidence            3

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.47  E-value=3.6e-12  Score=121.93  Aligned_cols=107  Identities=15%  Similarity=0.143  Sum_probs=87.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ...++.+|||+|||+|..++.++...++.+|+|+|+|+.+++.++++++.+|+. ++++++|+.++... ...++||.|+
T Consensus       241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~-~~~~~fD~Vl  318 (427)
T PRK10901        241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQW-WDGQPFDRIL  318 (427)
T ss_pred             CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhh-cccCCCCEEE
Confidence            345688999999999999999998876689999999999999999999999984 78999999875321 0136799999


Q ss_pred             EcCcc--------------------------cHHHHHHHHccccccCeEEEEEEc
Q 022962          198 ARAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       198 sn~~~--------------------------~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      +++..                          ....+++.+.++|||||++++...
T Consensus       319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            77411                          124789999999999999997653

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.47  E-value=1.2e-12  Score=117.56  Aligned_cols=105  Identities=15%  Similarity=0.184  Sum_probs=87.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|..++.+|.... .+.|+++|+++.+++.++++++.+++.+|++++.|+..+...   .++||.|+++
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~---~~~fD~Vl~D  147 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA---VPKFDAILLD  147 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh---ccCCCEEEEc
Confidence            578999999999999999987754 479999999999999999999999998899999998876432   2569999987


Q ss_pred             Cc--------------------------ccHHHHHHHHccccccCeEEEEEEcCC
Q 022962          200 AV--------------------------AEMRILAEYCLPLVRVGGLFVAAKGHD  228 (289)
Q Consensus       200 ~~--------------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~  228 (289)
                      +.                          .....+++.+.++|||||+++...-..
T Consensus       148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            31                          012469999999999999998765443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.47  E-value=1.1e-12  Score=125.52  Aligned_cols=130  Identities=16%  Similarity=0.195  Sum_probs=99.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ...++.+|||+|||+|..++.+|... +.++|+|+|+|+.+++.+++++++.|+++++++++|+.+++..  ..++||.|
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~--~~~~fD~V  311 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY--VQDTFDRI  311 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh--hhccCCEE
Confidence            44568899999999999999998775 4689999999999999999999999998899999999876421  23679999


Q ss_pred             EEcCcc--------------------------cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHH-HHHHHh-CCeEe
Q 022962          197 VARAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE-RAVQLM-GASLL  248 (289)
Q Consensus       197 ~sn~~~--------------------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~-~~l~~~-g~~~~  248 (289)
                      ++++..                          ....++..+.++|||||.+++..-....+|-+... ..++.+ ++.+.
T Consensus       312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~  391 (431)
T PRK14903        312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVI  391 (431)
T ss_pred             EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEe
Confidence            987311                          12677999999999999998876554444433333 344443 55544


Q ss_pred             E
Q 022962          249 Q  249 (289)
Q Consensus       249 ~  249 (289)
                      +
T Consensus       392 ~  392 (431)
T PRK14903        392 D  392 (431)
T ss_pred             c
Confidence            3

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.46  E-value=1.5e-12  Score=113.45  Aligned_cols=124  Identities=19%  Similarity=0.194  Sum_probs=92.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||+|||+|.++..++..  +.+|+|+|+|+++++.|+++....+. .++.+.++|+.+..      ++||+|++..
T Consensus        56 ~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~fD~ii~~~  127 (219)
T TIGR02021        56 GKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC------GEFDIVVCMD  127 (219)
T ss_pred             CCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC------CCcCEEEEhh
Confidence            679999999999999998864  56999999999999999999887776 47999999998753      5799999863


Q ss_pred             c------ccHHHHHHHHccccccCeEEEEEEcCCcH---------------------HHHHHHHHHHHHhCCeEeEEeee
Q 022962          201 V------AEMRILAEYCLPLVRVGGLFVAAKGHDPQ---------------------EEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       201 ~------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      +      .+...+++.+.+++++++.+.+.......                     ....++.+.++.+||.++....+
T Consensus       128 ~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~  207 (219)
T TIGR02021       128 VLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV  207 (219)
T ss_pred             HHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence            2      34567888888888877766642111000                     01234555677888888776533

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.46  E-value=1.1e-12  Score=123.80  Aligned_cols=126  Identities=14%  Similarity=0.124  Sum_probs=94.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCC-cCCCCceEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDV-SFREQYDVA  196 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~-~~~~~fD~V  196 (289)
                      .++.+|||+|||+|.+++..+. .+..+|++||+|+.+++.|++|++.++++  +++++++|+.++.... ...++||+|
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV  297 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence            3578999999999999887664 34569999999999999999999999985  7999999998753210 013579999


Q ss_pred             EEcCc-------------ccHHHHHHHHccccccCeEEEEEEc--CCcHHHHHHHH-HHHHHhCCe
Q 022962          197 VARAV-------------AEMRILAEYCLPLVRVGGLFVAAKG--HDPQEEVKNSE-RAVQLMGAS  246 (289)
Q Consensus       197 ~sn~~-------------~~~~~ll~~~~~~LkpgG~l~~~~g--~~~~~ei~~~~-~~l~~~g~~  246 (289)
                      ++++.             ..+..+++.+.++|+|||.++....  ....+++.++. ++..+.|-.
T Consensus       298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~  363 (396)
T PRK15128        298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRD  363 (396)
T ss_pred             EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCe
Confidence            99942             2467788889999999999997543  33445554433 334445543

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.46  E-value=3.1e-12  Score=113.18  Aligned_cols=132  Identities=17%  Similarity=0.148  Sum_probs=100.4

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDV  195 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~  195 (289)
                      ++.+|.+||+.|+|||.++..||+. .|.++|+..|..++.++.|++|.+..|+. ||++.+.|+.+-......+..||.
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da  116 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA  116 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence            3456999999999999999999975 58899999999999999999999999996 799999999653322122467999


Q ss_pred             EEEcCcccHHHHHHHHcccc-ccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEee
Q 022962          196 AVARAVAEMRILAEYCLPLV-RVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~L-kpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~  252 (289)
                      |+..-.+++ ..+..+.+.| ++||+++++.+  -.+.+....+.|++.||..+++..
T Consensus       117 vfLDlp~Pw-~~i~~~~~~L~~~gG~i~~fsP--~ieQv~~~~~~L~~~gf~~i~~~E  171 (247)
T PF08704_consen  117 VFLDLPDPW-EAIPHAKRALKKPGGRICCFSP--CIEQVQKTVEALREHGFTDIETVE  171 (247)
T ss_dssp             EEEESSSGG-GGHHHHHHHE-EEEEEEEEEES--SHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEEeCCCHH-HHHHHHHHHHhcCCceEEEECC--CHHHHHHHHHHHHHCCCeeeEEEE
Confidence            998754444 5677778899 89999998764  355666777888999997766543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.46  E-value=1.2e-12  Score=111.59  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=81.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC-----CCcCCCCce
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-----DVSFREQYD  194 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~-----~~~~~~~fD  194 (289)
                      ++.+|||+|||+|.++..++... +..+|+|+|+|+.+           ...+++++++|+.+...     .....++||
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D  100 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD  100 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence            58899999999999999888775 56799999999854           23468888888876421     001135799


Q ss_pred             EEEEcCcc---------------cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          195 VAVARAVA---------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       195 ~V~sn~~~---------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      +|++++..               ..+.+++.+.++|+|||++++...  +.+++.++...++. .+...++.
T Consensus       101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~--~~~~~~~~l~~l~~-~~~~~~~~  169 (188)
T TIGR00438       101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF--QGEEIDEYLNELRK-LFEKVKVT  169 (188)
T ss_pred             EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc--cCccHHHHHHHHHh-hhceEEEe
Confidence            99997421               136889999999999999998642  22333344444444 35444443

>PRK00811 spermidine synthase; Provisional

Probab=99.45  E-value=3e-12  Score=116.09  Aligned_cols=145  Identities=17%  Similarity=0.196  Sum_probs=104.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-----CCCEEEEeccccccCCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----LLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-----l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      +.+|||||||+|..+..+++..+..+|++||+++.+++.|++.....+     -.+++++.+|+..+-..  ..++||+|
T Consensus        77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDvI  154 (283)
T PRK00811         77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFDVI  154 (283)
T ss_pred             CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcccEE
Confidence            679999999999998888765455799999999999999999876532     24699999999875432  24689999


Q ss_pred             EEcCccc--------HHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCC-CCceEEE
Q 022962          197 VARAVAE--------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSP-FGQRTAV  265 (289)
Q Consensus       197 ~sn~~~~--------~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~-~~~r~lv  265 (289)
                      ++....+        ...+++.+.+.|+|||.+++..+.  ...+.+..+.+.+++. |..+......-|.- .+.+..+
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~~~~vp~~~~~~w~f~  233 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV-FPIVRPYQAAIPTYPSGLWSFT  233 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH-CCCEEEEEeECCcccCchheeE
Confidence            9974321        267889999999999999876542  2345566677777776 44344433333433 3456666


Q ss_pred             EEEe
Q 022962          266 VCLK  269 (289)
Q Consensus       266 ~~~k  269 (289)
                      ++.+
T Consensus       234 ~as~  237 (283)
T PRK00811        234 FASK  237 (283)
T ss_pred             Eeec
Confidence            6665

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.45  E-value=6.2e-13  Score=119.85  Aligned_cols=94  Identities=19%  Similarity=0.223  Sum_probs=76.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC---CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPD---WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~---~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ..+|||+|||+|.++..++...+.   .+|+|+|+|+.+++.|+++     ..++.+..+|+.+++..   +++||+|++
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~~---~~sfD~I~~  157 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPFA---DQSLDAIIR  157 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCCc---CCceeEEEE
Confidence            568999999999999999877653   4899999999999998764     24788999999887653   378999998


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEEEc
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      ...   +..++++.++|||||+|++...
T Consensus       158 ~~~---~~~~~e~~rvLkpgG~li~~~p  182 (272)
T PRK11088        158 IYA---PCKAEELARVVKPGGIVITVTP  182 (272)
T ss_pred             ecC---CCCHHHHHhhccCCCEEEEEeC
Confidence            643   2356788999999999998753

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.45  E-value=4.4e-13  Score=118.25  Aligned_cols=103  Identities=18%  Similarity=0.231  Sum_probs=86.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCC---CcCCCCceE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD---VSFREQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~---~~~~~~fD~  195 (289)
                      ++.+|||+|||+|+.++.+|...+ +++|+++|+++++++.|++|++.+|+. +|+++++|+.+.-..   ....++||+
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~  147 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF  147 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence            367999999999999999987754 689999999999999999999999986 599999999874211   001358999


Q ss_pred             EEEcCc-ccHHHHHHHHccccccCeEEEE
Q 022962          196 AVARAV-AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       196 V~sn~~-~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      |+..+. ..+..+++.+.++|+|||.+++
T Consensus       148 VfiDa~k~~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        148 AFVDADKPNYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             EEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            999964 4678999999999999999885

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.45  E-value=5.1e-13  Score=115.67  Aligned_cols=103  Identities=23%  Similarity=0.317  Sum_probs=79.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ++++.+|||||||||+.+-.+|... +..+|++||+++..++.|+++.+.++..||+++++|.......   ..+||.|+
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~---~apfD~I~  146 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE---EAPFDRII  146 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG---G-SEEEEE
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc---CCCcCEEE
Confidence            4569999999999999999999875 4568999999999999999999999999999999998764322   36899999


Q ss_pred             EcC-cccHHHHHHHHccccccCeEEEEEEcC
Q 022962          198 ARA-VAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       198 sn~-~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      +++ ...++   ....+.|++||++++..+.
T Consensus       147 v~~a~~~ip---~~l~~qL~~gGrLV~pi~~  174 (209)
T PF01135_consen  147 VTAAVPEIP---EALLEQLKPGGRLVAPIGQ  174 (209)
T ss_dssp             ESSBBSS-----HHHHHTEEEEEEEEEEESS
T ss_pred             EeeccchHH---HHHHHhcCCCcEEEEEEcc
Confidence            985 33333   2234569999999987764

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=7.5e-13  Score=113.24  Aligned_cols=104  Identities=21%  Similarity=0.315  Sum_probs=85.9

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      .++++.+||+||||||+.+-.||+..  .+|+.||..++..+.|++|.+.+|+.||.++++|-..--..   ..+||.|+
T Consensus        69 ~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~---~aPyD~I~  143 (209)
T COG2518          69 ELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE---EAPYDRII  143 (209)
T ss_pred             CCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC---CCCcCEEE
Confidence            45678999999999999999999874  49999999999999999999999999999999998764222   36899999


Q ss_pred             EcC-ccc-HHHHHHHHccccccCeEEEEEEcCCcH
Q 022962          198 ARA-VAE-MRILAEYCLPLVRVGGLFVAAKGHDPQ  230 (289)
Q Consensus       198 sn~-~~~-~~~ll~~~~~~LkpgG~l~~~~g~~~~  230 (289)
                      ..+ ... ++.+++    .|++||++++..|....
T Consensus       144 Vtaaa~~vP~~Ll~----QL~~gGrlv~PvG~~~~  174 (209)
T COG2518         144 VTAAAPEVPEALLD----QLKPGGRLVIPVGSGPA  174 (209)
T ss_pred             EeeccCCCCHHHHH----hcccCCEEEEEEccCCc
Confidence            885 333 355554    69999999998884433

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.44  E-value=1.2e-12  Score=120.34  Aligned_cols=101  Identities=19%  Similarity=0.252  Sum_probs=82.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.++..+++..+. .+|+++|+++++++.|+++++.++.+|+.++++|+.+....   ..+||+|++.
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~---~~~fD~Ii~~  156 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE---FAPYDVIFVT  156 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc---cCCccEEEEC
Confidence            4789999999999999999987653 58999999999999999999999998999999998765432   2579999987


Q ss_pred             CcccHHHHHHHHccccccCeEEEEEEc
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      ...  ..+...+.+.|+|||.+++..+
T Consensus       157 ~g~--~~ip~~~~~~LkpgG~Lvv~~~  181 (322)
T PRK13943        157 VGV--DEVPETWFTQLKEGGRVIVPIN  181 (322)
T ss_pred             Cch--HHhHHHHHHhcCCCCEEEEEeC
Confidence            422  2233445678999999988654

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.44  E-value=4.1e-12  Score=105.48  Aligned_cols=124  Identities=17%  Similarity=0.223  Sum_probs=96.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ..+|||+|||.|.+...|+..--..+.+|||.|+++++.|+..+++.+.+| |+|.+.|+.+...   +.++||+|+--+
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~---~~~qfdlvlDKG  144 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDF---LSGQFDLVLDKG  144 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcc---cccceeEEeecC
Confidence            349999999999999999977444579999999999999999999999988 9999999987532   247788887541


Q ss_pred             ------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          201 ------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 ------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                                  ...+...+..+.++|+|||+|++..-.-..+|+.+   .+...||....-.
T Consensus       145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~---~f~~~~f~~~~tv  204 (227)
T KOG1271|consen  145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVE---EFENFNFEYLSTV  204 (227)
T ss_pred             ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHH---HHhcCCeEEEEee
Confidence                        22345667788899999999999876655666544   4446777655443

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.43  E-value=8.3e-13  Score=124.46  Aligned_cols=96  Identities=19%  Similarity=0.207  Sum_probs=80.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++++.+|||||||+|.+++.+|..+ +++|+|+|+|+++++.|+++++  ++ ++++...|..++      +++||.|++
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l------~~~fD~Ivs  234 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL------NGQFDRIVS  234 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc------CCCCCEEEE
Confidence            4568899999999999999998765 6799999999999999999875  33 488888887665      267999998


Q ss_pred             cCc------ccHHHHHHHHccccccCeEEEEE
Q 022962          199 RAV------AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       199 n~~------~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..+      .+++.+++++.++|||||.+++.
T Consensus       235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~  266 (383)
T PRK11705        235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH  266 (383)
T ss_pred             eCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence            742      35688999999999999999875

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.43  E-value=3.8e-12  Score=107.73  Aligned_cols=96  Identities=15%  Similarity=0.180  Sum_probs=75.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      -.++||+|||.|.++..||..  ..+++++|+|+.+++.|++....  ..+|+++++|+.+...    .++||+|+...+
T Consensus        44 y~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~P----~~~FDLIV~SEV  115 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFWP----EGRFDLIVLSEV  115 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT-------SS-EEEEEEES-
T ss_pred             cceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCCC----CCCeeEEEEehH
Confidence            358999999999999999977  46999999999999999997664  4589999999977543    379999999853


Q ss_pred             -------ccHHHHHHHHccccccCeEEEEEE
Q 022962          202 -------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       202 -------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                             +++..++..+...|+|||.+++-+
T Consensus       116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~  146 (201)
T PF05401_consen  116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGH  146 (201)
T ss_dssp             GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence                   357789999999999999999875

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PHA03411 putative methyltransferase; Provisional

Probab=99.43  E-value=5.1e-12  Score=112.75  Aligned_cols=124  Identities=12%  Similarity=0.110  Sum_probs=92.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||+|||+|.+++.++...+..+|+|+|+|+.+++.++++.     .+++++++|+.++..    .++||+|++|. 
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~----~~kFDlIIsNPP  135 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES----NEKFDVVISNPP  135 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc----cCCCcEEEEcCC
Confidence            56999999999999998887766789999999999999998752     368899999988653    26899999983 


Q ss_pred             --------------c-------c--cHHHHHHHHccccccCeEEEEEEcCCcH----HHHHHHHHHHHHhCCeEeEEeee
Q 022962          201 --------------V-------A--EMRILAEYCLPLVRVGGLFVAAKGHDPQ----EEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       201 --------------~-------~--~~~~ll~~~~~~LkpgG~l~~~~g~~~~----~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                                    .       .  .+..++..+..+|+|+|.+++.....+.    -.-.+..+.++..||...--|-+
T Consensus       136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~~~~~~  215 (279)
T PHA03411        136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTYAGCGI  215 (279)
T ss_pred             ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEecCCCCc
Confidence                          0       0  1367888889999999988876533211    11133445677889876655544


Q ss_pred             e
Q 022962          254 E  254 (289)
Q Consensus       254 ~  254 (289)
                      +
T Consensus       216 ~  216 (279)
T PHA03411        216 D  216 (279)
T ss_pred             c
Confidence            3

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.42  E-value=1.6e-12  Score=116.67  Aligned_cols=102  Identities=17%  Similarity=0.190  Sum_probs=78.7

Q ss_pred             CCCeEEEEcCCCCh----HHHHHHHHCC-----CCEEEEEeCChHHHHHHHHHHH------Hc-------------C---
Q 022962          121 SNLKLVDVGTGAGL----PGLVLAIACP-----DWKVTLLESMNKRCVFLEHAVS------LT-------------Q---  169 (289)
Q Consensus       121 ~~~~VLDiGcG~G~----~~l~la~~~p-----~~~V~~iD~s~~~l~~a~~~~~------~~-------------~---  169 (289)
                      ++.+|+|+|||||-    +++.++...+     +.+|+|+|+|+.|++.|++.+-      ..             +   
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            35799999999996    5666665544     4799999999999999998431      00             0   


Q ss_pred             ----C-CCEEEEeccccccCCCCcCCCCceEEEEcCc------ccHHHHHHHHccccccCeEEEEEE
Q 022962          170 ----L-LNVQIVRGRAETLGKDVSFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       170 ----l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                          + ++|+|.+.|+.+.+..   .++||+|+|+.+      .....+++.+.+.|+|||+|++-.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~---~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPP---LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCc---cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                1 2689999999886542   378999999753      345689999999999999999744

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.42  E-value=4.4e-12  Score=119.33  Aligned_cols=138  Identities=11%  Similarity=0.058  Sum_probs=103.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.+++.+|..  +.+|+|||+|+.+++.|++|++.++++|++++++|++++...  ..++||+|+++.
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~vi~DP  308 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA--QMSAPELVLVNP  308 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh--cCCCCCEEEECC
Confidence            3679999999999999999843  579999999999999999999999998999999999875421  124699999995


Q ss_pred             cc-c-HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEEEE
Q 022962          201 VA-E-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVVCL  268 (289)
Q Consensus       201 ~~-~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~~~  268 (289)
                      .- . .+.+++.+. .++|++.+++..++.  --..++. .|  .||.+.++..++ +|....-..+++++
T Consensus       309 Pr~G~~~~~l~~l~-~~~p~~ivyvsc~p~--TlaRDl~-~L--~gy~l~~~~~~DmFPqT~HvE~v~ll~  373 (374)
T TIGR02085       309 PRRGIGKELCDYLS-QMAPKFILYSSCNAQ--TMAKDIA-EL--SGYQIERVQLFDMFPHTSHYEVLTLLV  373 (374)
T ss_pred             CCCCCcHHHHHHHH-hcCCCeEEEEEeCHH--HHHHHHH-Hh--cCceEEEEEEeccCCCCCcEEEEEEEe
Confidence            32 1 245555554 478999998877542  2223333 23  689999999887 56555555566654

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.41  E-value=4.1e-12  Score=122.19  Aligned_cols=125  Identities=18%  Similarity=0.149  Sum_probs=94.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..++.+|||+|||+|..++.++... +.++|+|+|+|+.+++.++++++.+|+++|+++++|+.++..    +++||+|+
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~----~~~fD~Vl  323 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP----EEQPDAIL  323 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc----CCCCCEEE
Confidence            4467899999999999999888764 357999999999999999999999999889999999987643    26799999


Q ss_pred             EcCc-------------------c-------cHHHHHHHHccccccCeEEEEEEcCCcHHH-HHHHHHHHHHh-CCeE
Q 022962          198 ARAV-------------------A-------EMRILAEYCLPLVRVGGLFVAAKGHDPQEE-VKNSERAVQLM-GASL  247 (289)
Q Consensus       198 sn~~-------------------~-------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e-i~~~~~~l~~~-g~~~  247 (289)
                      +.+.                   .       ....++..+.++|||||++++..-....+| -.-+...++.+ ++..
T Consensus       324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~  401 (445)
T PRK14904        324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSA  401 (445)
T ss_pred             EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence            7521                   0       124689999999999999998664332222 22233444454 4554

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.41  E-value=9e-13  Score=111.41  Aligned_cols=101  Identities=22%  Similarity=0.207  Sum_probs=83.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEE-EEeccccccCCCCcCCCCceEEEEc-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQ-IVRGRAETLGKDVSFREQYDVAVAR-  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~-~~~~d~~~~~~~~~~~~~fD~V~sn-  199 (289)
                      ...||+||||||..= ..-...|..+||++|++++|-+++.+.+++....++. |+.++.++++..  .+++||.|++. 
T Consensus        77 K~~vLEvgcGtG~Nf-kfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l--~d~s~DtVV~Tl  153 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANF-KFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL--ADGSYDTVVCTL  153 (252)
T ss_pred             ccceEEecccCCCCc-ccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc--ccCCeeeEEEEE
Confidence            457899999999742 2211236889999999999999999999888766776 999999998742  25899999987 


Q ss_pred             ---CcccHHHHHHHHccccccCeEEEEEE
Q 022962          200 ---AVAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       200 ---~~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                         ++.+....|+++.++|+|||++++..
T Consensus       154 vLCSve~~~k~L~e~~rlLRpgG~iifiE  182 (252)
T KOG4300|consen  154 VLCSVEDPVKQLNEVRRLLRPGGRIIFIE  182 (252)
T ss_pred             EEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence               57789999999999999999999753

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.40  E-value=2.1e-11  Score=111.91  Aligned_cols=120  Identities=15%  Similarity=0.127  Sum_probs=85.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-----CCCEEEEeccccccCCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----LLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-----l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      +.+|||||||+|.+++.++..  +.+|+|+|+|+.|++.++++++..+     ..++++..+|++++      +++||+|
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------~~~fD~V  216 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------SGKYDTV  216 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc------CCCcCEE
Confidence            679999999999999999965  6799999999999999999987652     23688888888764      2689999


Q ss_pred             EEcCcc------cHHHHHHHHccccccCeEEEEEEcCCcH-----------------------HHHHHHHHHHHHhCCeE
Q 022962          197 VARAVA------EMRILAEYCLPLVRVGGLFVAAKGHDPQ-----------------------EEVKNSERAVQLMGASL  247 (289)
Q Consensus       197 ~sn~~~------~~~~ll~~~~~~LkpgG~l~~~~g~~~~-----------------------~ei~~~~~~l~~~g~~~  247 (289)
                      +|..+-      ....+++.+.+ +.+||.++.. .+...                       ....++.+.++..||++
T Consensus       217 v~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~-~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v  294 (315)
T PLN02585        217 TCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISF-APKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV  294 (315)
T ss_pred             EEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEe-CCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence            987431      23456666654 4566665532 21100                       01244556677889987


Q ss_pred             eEEe
Q 022962          248 LQLC  251 (289)
Q Consensus       248 ~~~~  251 (289)
                      ....
T Consensus       295 ~~~~  298 (315)
T PLN02585        295 ARRE  298 (315)
T ss_pred             EEEE
Confidence            6554

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.40  E-value=3.5e-12  Score=110.25  Aligned_cols=92  Identities=11%  Similarity=0.096  Sum_probs=73.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.++..++...|+.+++|||+|+.|++.|+++.     .++.++++|+.+ +..   +++||+|+++.
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~---~~sfD~V~~~~  113 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFK---DNFFDLVLTKG  113 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCC---CCCEEEEEECC
Confidence            367899999999999999988778899999999999999998753     357788888877 332   47899999986


Q ss_pred             c------ccHHHHHHHHccccccCeEEEE
Q 022962          201 V------AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       201 ~------~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      +      .....+++++.+++  ++.+++
T Consensus       114 vL~hl~p~~~~~~l~el~r~~--~~~v~i  140 (204)
T TIGR03587       114 VLIHINPDNLPTAYRELYRCS--NRYILI  140 (204)
T ss_pred             hhhhCCHHHHHHHHHHHHhhc--CcEEEE
Confidence            3      23578888888887  455554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.39  E-value=2.3e-12  Score=112.09  Aligned_cols=99  Identities=18%  Similarity=0.020  Sum_probs=75.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH------------cCCCCEEEEeccccccCCCCcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL------------TQLLNVQIVRGRAETLGKDVSF  189 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~------------~~l~ni~~~~~d~~~~~~~~~~  189 (289)
                      +.+|||+|||.|..++.||.+  +.+|+|||+|+.+++.+......            ..-.+|+++++|+.++...  .
T Consensus        35 ~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~  110 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA--D  110 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--c
Confidence            679999999999999999965  78999999999999976432110            0113589999999887642  1


Q ss_pred             CCCceEEEEcC------cccHHHHHHHHccccccCeEEEEE
Q 022962          190 REQYDVAVARA------VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       190 ~~~fD~V~sn~------~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .++||.|+-++      ....+.+++.+.++|||||+++++
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            25688888663      234578999999999999986554

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.39  E-value=7.1e-12  Score=107.56  Aligned_cols=124  Identities=19%  Similarity=0.131  Sum_probs=96.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcc
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA  202 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~  202 (289)
                      ..+||||||.|...+.+|..+|+..++|||++...+..+...+...+++|+.++++|+..+-.....++++|.|..+-..
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD   98 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD   98 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence            38999999999999999999999999999999999999999999999999999999998732211113789999998321


Q ss_pred             ------------cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHh--CCeEe
Q 022962          203 ------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLM--GASLL  248 (289)
Q Consensus       203 ------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~--g~~~~  248 (289)
                                  --+.+++.+.+.|+|||.+.+...  ..+-...+.+.+...  +|+..
T Consensus        99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD--~~~y~~~~~~~~~~~~~~f~~~  156 (195)
T PF02390_consen   99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD--VEEYAEWMLEQFEESHPGFENI  156 (195)
T ss_dssp             ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---HHHHHHHHHHHHHHSTTEEEE
T ss_pred             CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC--CHHHHHHHHHHHHhcCcCeEEc
Confidence                        127899999999999999988653  445555566667674  56544

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.38  E-value=6.7e-12  Score=120.24  Aligned_cols=129  Identities=15%  Similarity=0.108  Sum_probs=97.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC-CCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~-~~~fD~V~s  198 (289)
                      .++.+|||+|||+|.+++.+|..  ..+|+|+|+|+.+++.|++|++.++++|++++++|+.+....... +++||+|++
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~  368 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL  368 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence            45679999999999999999976  468999999999999999999999999999999999874211001 257999999


Q ss_pred             cCcc-c-HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962          199 RAVA-E-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  254 (289)
Q Consensus       199 n~~~-~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~  254 (289)
                      +... . ...+++.+.+ ++|++.+++...+   ..+..-.+.+...|+.+..+..++
T Consensus       369 dPPr~G~~~~~l~~l~~-l~~~~ivyvsc~p---~tlard~~~l~~~gy~~~~~~~~D  422 (431)
T TIGR00479       369 DPPRKGCAAEVLRTIIE-LKPERIVYVSCNP---ATLARDLEFLCKEGYGITWVQPVD  422 (431)
T ss_pred             CcCCCCCCHHHHHHHHh-cCCCEEEEEcCCH---HHHHHHHHHHHHCCeeEEEEEEec
Confidence            8532 2 3566666554 8899887765432   233333445667899999988876

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.38  E-value=5.3e-12  Score=108.56  Aligned_cols=103  Identities=15%  Similarity=0.037  Sum_probs=80.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||+|||+|.+++.++.. ...+|+++|+++.+++.+++|++.+++++++++++|+.+....  ..++||+|++|+.
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr-~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~--~~~~fDlV~~DPP  130 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSR-YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ--PGTPHNVVFVDPP  130 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh--cCCCceEEEECCC
Confidence            679999999999999864433 2579999999999999999999999988899999999774321  1357999999963


Q ss_pred             --cc-HHHHHHHHc--cccccCeEEEEEEcC
Q 022962          202 --AE-MRILAEYCL--PLVRVGGLFVAAKGH  227 (289)
Q Consensus       202 --~~-~~~ll~~~~--~~LkpgG~l~~~~g~  227 (289)
                        .. .+.+++.+.  .+|+|+|.+++++..
T Consensus       131 y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        131 FRKGLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             CCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence              22 334444443  458999999998764

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.38  E-value=3e-11  Score=105.50  Aligned_cols=98  Identities=16%  Similarity=-0.015  Sum_probs=74.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHH------------HcCCCCEEEEeccccccCCCCcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS------------LTQLLNVQIVRGRAETLGKDVSF  189 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~------------~~~l~ni~~~~~d~~~~~~~~~~  189 (289)
                      +.+|||+|||.|..++.||..  +.+|+|||+|+.+++.+.....            ...-.+|++.++|+.++....  
T Consensus        38 ~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~--  113 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD--  113 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc--
Confidence            679999999999999999964  7899999999999997643110            001136899999999875431  


Q ss_pred             CCCceEEEEcC------cccHHHHHHHHccccccCeEEEE
Q 022962          190 REQYDVAVARA------VAEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       190 ~~~fD~V~sn~------~~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      ...||+|+-.+      ......+++.+.++|+|||++++
T Consensus       114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            24799999653      23467899999999999986443

>PHA03412 putative methyltransferase; Provisional

Probab=99.36  E-value=7.6e-12  Score=109.31  Aligned_cols=92  Identities=14%  Similarity=0.130  Sum_probs=72.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC---CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~---p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +.+|||+|||+|.+++.++...   +..+|+|+|+++.+++.|+++.     .++.++++|+.....    +++||+|++
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~----~~~FDlIIs  120 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF----DTLFDMAIS  120 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc----cCCccEEEE
Confidence            5799999999999999998764   3579999999999999999864     358899999986543    368999999


Q ss_pred             cC------c----------ccHHHHHHHHccccccCeEEEE
Q 022962          199 RA------V----------AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       199 n~------~----------~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      |.      .          .....+++.+.+++++|+. ++
T Consensus       121 NPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL  160 (241)
T PHA03412        121 NPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II  160 (241)
T ss_pred             CCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence            93      0          1246688888886666665 54

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.36  E-value=2.3e-11  Score=111.52  Aligned_cols=80  Identities=14%  Similarity=0.248  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc-CCC-CEEEEe-ccccccCCCC-cCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-QLL-NVQIVR-GRAETLGKDV-SFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-~l~-ni~~~~-~d~~~~~~~~-~~~~~fD~V  196 (289)
                      .+.++||||||+|++...++...++++++|+|+|+.+++.|++|++.+ ++. +|++.+ .+..++.... ...+.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            367999999999999988888878899999999999999999999999 775 588764 3443332110 013689999


Q ss_pred             EEcC
Q 022962          197 VARA  200 (289)
Q Consensus       197 ~sn~  200 (289)
                      +||.
T Consensus       194 vcNP  197 (321)
T PRK11727        194 LCNP  197 (321)
T ss_pred             EeCC
Confidence            9993

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.36  E-value=7.8e-12  Score=93.38  Aligned_cols=98  Identities=26%  Similarity=0.381  Sum_probs=80.7

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcc-
Q 022962          124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA-  202 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~-  202 (289)
                      +++|+|||+|..+..++. .+..+++++|+++.++..+++.....+..++++++.|+.+....  ..++||+|+++... 
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~i~~~~~~~   77 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE--ADESFDVIISDPPLH   77 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc--cCCceEEEEEcccee
Confidence            489999999999888886 56789999999999999998655555556799999999886531  23689999998643 


Q ss_pred             ----cHHHHHHHHccccccCeEEEEE
Q 022962          203 ----EMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       203 ----~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                          ....+++.+.+.|+|||.+++.
T Consensus        78 ~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          78 HLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence                4589999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=6.8e-11  Score=99.09  Aligned_cols=121  Identities=12%  Similarity=0.155  Sum_probs=85.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|+|+|||||.+++..+.. ...+|+|+|+++++++.+++|+.++ ..+|.|+.+|+.++.      ..||.+++|..
T Consensus        46 g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~~~~------~~~dtvimNPP  117 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADVSDFR------GKFDTVIMNPP  117 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhh-CCceEEEEcchhhcC------CccceEEECCC
Confidence            778999999999999997754 5679999999999999999999994 347999999999864      67999999941


Q ss_pred             -------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCC
Q 022962          202 -------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQS  257 (289)
Q Consensus       202 -------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~  257 (289)
                             +++ .++..+.+.-   -.++-.+.....+-   +.+..+.+|+.+..+....++-
T Consensus       118 FG~~~rhaDr-~Fl~~Ale~s---~vVYsiH~a~~~~f---~~~~~~~~G~~v~~~~~~~~~i  173 (198)
T COG2263         118 FGSQRRHADR-PFLLKALEIS---DVVYSIHKAGSRDF---VEKFAADLGGTVTHIERARFPI  173 (198)
T ss_pred             CccccccCCH-HHHHHHHHhh---heEEEeeccccHHH---HHHHHHhcCCeEEEEEEEEEec
Confidence                   233 3444333332   23333333332222   3345568898877765554433

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.36  E-value=4.3e-12  Score=109.94  Aligned_cols=102  Identities=25%  Similarity=0.416  Sum_probs=89.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEe-ccccccCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVR-GRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~-~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ++.+||+|||+.|+.++.+|...| +++++.||+++++.+.|++|.++.|+.+ |+.+. +|..+.-.. ...++||+|+
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~~~~~fDliF  137 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-LLDGSFDLVF  137 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-ccCCCccEEE
Confidence            478999999999999999999988 7899999999999999999999999976 88888 477664332 1247999999


Q ss_pred             EcC-cccHHHHHHHHccccccCeEEEE
Q 022962          198 ARA-VAEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       198 sn~-~~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      ..+ -++++.+++.+.++|+|||.+++
T Consensus       138 IDadK~~yp~~le~~~~lLr~GGliv~  164 (219)
T COG4122         138 IDADKADYPEYLERALPLLRPGGLIVA  164 (219)
T ss_pred             EeCChhhCHHHHHHHHHHhCCCcEEEE
Confidence            986 56889999999999999999985

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.34  E-value=2.1e-11  Score=106.56  Aligned_cols=124  Identities=20%  Similarity=0.218  Sum_probs=88.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|..+..++..  ..+|+|+|+|+.+++.|+++....+. +++.+..+|+...      +++||+|+++
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~fD~v~~~  134 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL------LGRFDTVVCL  134 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc------cCCcCEEEEc
Confidence            3679999999999999999865  45799999999999999999888776 4699999985432      3679999987


Q ss_pred             Cc------ccHHHHHHHHccccccCeEEEEEEcCCcH----------------------HHHHHHHHHHHHhCCeEeEEe
Q 022962          200 AV------AEMRILAEYCLPLVRVGGLFVAAKGHDPQ----------------------EEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       200 ~~------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~----------------------~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      .+      .....+++.+.+.+++++.+.+ ......                      -...++.+.+...||.+.++.
T Consensus       135 ~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  213 (230)
T PRK07580        135 DVLIHYPQEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTE  213 (230)
T ss_pred             chhhcCCHHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeee
Confidence            42      2456777888776654444332 211100                      011334556778899888876


Q ss_pred             ee
Q 022962          252 SV  253 (289)
Q Consensus       252 ~~  253 (289)
                      .+
T Consensus       214 ~~  215 (230)
T PRK07580        214 RI  215 (230)
T ss_pred             ec
Confidence            54

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.34  E-value=1.8e-11  Score=117.04  Aligned_cols=108  Identities=17%  Similarity=0.177  Sum_probs=84.4

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ...++.+|||+|||+|..++.++...+.++|+|+|+++++++.+++|++.+|++ ++++..+|....... ...++||.|
T Consensus       235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-~~~~~fD~V  313 (426)
T TIGR00563       235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-AENEQFDRI  313 (426)
T ss_pred             CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc-ccccccCEE
Confidence            345688999999999999999998877789999999999999999999999986 233366666543320 013679999


Q ss_pred             EEcCc----------cc----------------HHHHHHHHccccccCeEEEEEEc
Q 022962          197 VARAV----------AE----------------MRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       197 ~sn~~----------~~----------------~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      ++++.          .+                ...+++.+.++|||||++++..-
T Consensus       314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc  369 (426)
T TIGR00563       314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC  369 (426)
T ss_pred             EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            97631          01                26799999999999999997653

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK03612 spermidine synthase; Provisional

Probab=99.33  E-value=1.6e-11  Score=120.24  Aligned_cols=145  Identities=17%  Similarity=0.143  Sum_probs=104.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHH--HH-----cCCCCEEEEeccccccCCCCcCCCC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAV--SL-----TQLLNVQIVRGRAETLGKDVSFREQ  192 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~--~~-----~~l~ni~~~~~d~~~~~~~~~~~~~  192 (289)
                      ++.+|||||||+|..+..+++ ++. .+|+++|+|+++++.++++.  ..     ..-++++++++|..++...  .+++
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~--~~~~  373 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK--LAEK  373 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh--CCCC
Confidence            467999999999999888875 455 79999999999999999842  22     1224699999999875322  2368


Q ss_pred             ceEEEEcCccc---------HHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCc
Q 022962          193 YDVAVARAVAE---------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ  261 (289)
Q Consensus       193 fD~V~sn~~~~---------~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~  261 (289)
                      ||+|+++...+         .+++++.+.+.|+|||.+++..+.  ...+.+.++.+.+++.|| .+.......|. .+.
T Consensus       374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps-~g~  451 (521)
T PRK03612        374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPYHVNVPS-FGE  451 (521)
T ss_pred             CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEEEeCCCC-cch
Confidence            99999984221         246889999999999999886542  235556778888999999 33332222233 467


Q ss_pred             eEEEEEEec
Q 022962          262 RTAVVCLKS  270 (289)
Q Consensus       262 r~lv~~~k~  270 (289)
                      +..++..|.
T Consensus       452 w~f~~as~~  460 (521)
T PRK03612        452 WGFVLAGAG  460 (521)
T ss_pred             hHHHeeeCC
Confidence            767777654

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.33  E-value=4.5e-12  Score=109.50  Aligned_cols=103  Identities=26%  Similarity=0.337  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCC---CcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD---VSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~---~~~~~~fD~V  196 (289)
                      ..+||+||||+|+.++.+|...| +++|+.+|++++..+.|+++++..|+. +|+++.+|+.+.-..   ....++||+|
T Consensus        46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V  125 (205)
T PF01596_consen   46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV  125 (205)
T ss_dssp             -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred             CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence            67999999999999999998876 689999999999999999999999985 599999999874211   0012579999


Q ss_pred             EEcCc-ccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAV-AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~-~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +..+. ..+...++.+.++|+|||.+++-
T Consensus       126 FiDa~K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  126 FIDADKRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             EEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcccccchhhHHHHHhhhccCCeEEEEc
Confidence            99864 46889999999999999999863

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.33  E-value=3.4e-11  Score=112.79  Aligned_cols=138  Identities=14%  Similarity=0.069  Sum_probs=100.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-------------C
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------------F  189 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-------------~  189 (289)
                      .+|||++||+|.+++.+++.  ..+|+|||+|+.+++.|++|++.++++|++++++|+.++.....             .
T Consensus       208 ~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~  285 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK  285 (362)
T ss_pred             CeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence            57999999999999999876  35999999999999999999999999899999999987421100             0


Q ss_pred             CCCceEEEEcCcc-c-HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEE
Q 022962          190 REQYDVAVARAVA-E-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVV  266 (289)
Q Consensus       190 ~~~fD~V~sn~~~-~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~  266 (289)
                      ..+||+|+.++.. . .+.+++.+.+   +++.+++..++  ..-..++. .|.. ||.+.++..++ +|....-..+++
T Consensus       286 ~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvSC~p--~tlarDl~-~L~~-gY~l~~v~~~DmFPqT~HvE~v~l  358 (362)
T PRK05031        286 SYNFSTIFVDPPRAGLDDETLKLVQA---YERILYISCNP--ETLCENLE-TLSQ-THKVERFALFDQFPYTHHMECGVL  358 (362)
T ss_pred             CCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEEeCH--HHHHHHHH-HHcC-CcEEEEEEEcccCCCCCcEEEEEE
Confidence            1258999998532 1 3455555544   68888877655  22223333 3333 99999999987 566655666666


Q ss_pred             EEe
Q 022962          267 CLK  269 (289)
Q Consensus       267 ~~k  269 (289)
                      +++
T Consensus       359 L~r  361 (362)
T PRK05031        359 LEK  361 (362)
T ss_pred             EEe
Confidence            654

>PLN02476 O-methyltransferase

Probab=99.32  E-value=9.5e-12  Score=111.76  Aligned_cols=103  Identities=24%  Similarity=0.259  Sum_probs=87.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCC---CcCCCCceE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD---VSFREQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~---~~~~~~fD~  195 (289)
                      ++.+|||||||+|+.++.+|...| +++|+++|.++++++.|+++.++.|+. +|+++.+|+.+.-..   ....++||+
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~  197 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF  197 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence            478999999999999999998764 679999999999999999999999996 699999999774211   001258999


Q ss_pred             EEEcCc-ccHHHHHHHHccccccCeEEEE
Q 022962          196 AVARAV-AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       196 V~sn~~-~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      |+..+. ..+..+++.+.++|+|||.+++
T Consensus       198 VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        198 AFVDADKRMYQDYFELLLQLVRVGGVIVM  226 (278)
T ss_pred             EEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            999875 4688999999999999999885

>PRK01581 speE spermidine synthase; Validated

Probab=99.32  E-value=5.5e-11  Score=109.98  Aligned_cols=148  Identities=12%  Similarity=0.029  Sum_probs=103.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHH-----HH--HcCCCCEEEEeccccccCCCCcCCCC
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHA-----VS--LTQLLNVQIVRGRAETLGKDVSFREQ  192 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~-----~~--~~~l~ni~~~~~d~~~~~~~~~~~~~  192 (289)
                      .++.+||+||||+|.....+.+..+..+|++||+++++++.|++.     ..  .+.-++++++.+|+.++-..  ..++
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~--~~~~  226 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS--PSSL  226 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh--cCCC
Confidence            346799999999999777766544457999999999999999962     11  12234799999999885332  2368


Q ss_pred             ceEEEEcCccc---------HHHHHHHHccccccCeEEEEEEcCCc--HHHHHHHHHHHHHhCCeEeEEeeeecCCCCCc
Q 022962          193 YDVAVARAVAE---------MRILAEYCLPLVRVGGLFVAAKGHDP--QEEVKNSERAVQLMGASLLQLCSVESQSPFGQ  261 (289)
Q Consensus       193 fD~V~sn~~~~---------~~~ll~~~~~~LkpgG~l~~~~g~~~--~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~  261 (289)
                      ||+|++....+         -.++++.+.+.|+|||.+++-.+...  ...+..+.+.++..|+........ .|...+.
T Consensus       227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~-vPsyg~~  305 (374)
T PRK01581        227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTI-VPSFGTD  305 (374)
T ss_pred             ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEe-cCCCCCc
Confidence            99999984221         26789999999999999987654221  222345667788888876654432 3444444


Q ss_pred             eEEEEEEec
Q 022962          262 RTAVVCLKS  270 (289)
Q Consensus       262 r~lv~~~k~  270 (289)
                      +..++..+.
T Consensus       306 WgF~~as~~  314 (374)
T PRK01581        306 WGFHIAANS  314 (374)
T ss_pred             eEEEEEeCC
Confidence            666666653

>PLN02366 spermidine synthase

Probab=99.31  E-value=9.4e-11  Score=107.27  Aligned_cols=149  Identities=13%  Similarity=0.054  Sum_probs=104.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc--CC--CCEEEEeccccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QL--LNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~--~l--~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ++.+|||||||.|..+..+++..+..+|+.||+++.+++.+++.....  ++  ++++++.+|...+-.. ..+++||+|
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~-~~~~~yDvI  169 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN-APEGTYDAI  169 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh-ccCCCCCEE
Confidence            367999999999999988886533479999999999999999976543  22  3699999998665321 013679999


Q ss_pred             EEcCcc--------cHHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCC-CCceEEE
Q 022962          197 VARAVA--------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSP-FGQRTAV  265 (289)
Q Consensus       197 ~sn~~~--------~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~-~~~r~lv  265 (289)
                      ++....        --..+++.+.+.|+|||.++...+.  ...+.+..+.+.++......+.......|.- .+.+..+
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~  249 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFV  249 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEE
Confidence            997532        1357899999999999999864432  2345566677777776533443322223433 3567777


Q ss_pred             EEEec
Q 022962          266 VCLKS  270 (289)
Q Consensus       266 ~~~k~  270 (289)
                      ++.+.
T Consensus       250 ~as~~  254 (308)
T PLN02366        250 LCSKE  254 (308)
T ss_pred             EEECC
Confidence            77765

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.31  E-value=1.9e-11  Score=118.48  Aligned_cols=99  Identities=18%  Similarity=0.167  Sum_probs=77.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||||||+|..+..++..  ..+|+|+|+++++++.+++...  ...+++++++|+.+...+ ..+++||+|+++..
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~-~~~~~fD~I~~~~~  112 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLN-ISDGSVDLIFSNWL  112 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccC-CCCCCEEEEehhhh
Confidence            669999999999999999976  4699999999999987655221  235799999999643211 11368999999852


Q ss_pred             c------cHHHHHHHHccccccCeEEEEEE
Q 022962          202 A------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       202 ~------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .      ....+++++.++|||||++++..
T Consensus       113 l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        113 LMYLSDKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             HHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            2      35789999999999999998753

>TIGR00417 speE spermidine synthase

Probab=99.30  E-value=8.2e-11  Score=106.00  Aligned_cols=145  Identities=15%  Similarity=0.088  Sum_probs=102.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC----CCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~----l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.+|||||||+|..+..++...+..+|+++|+++++++.++++....+    ..+++++.+|..++-..  ..++||+|+
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~--~~~~yDvIi  150 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD--TENTFDVII  150 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh--CCCCccEEE
Confidence            459999999999988887765456799999999999999999765532    23688888887664221  136899999


Q ss_pred             EcCcc------c--HHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCC-CCceEEEE
Q 022962          198 ARAVA------E--MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSP-FGQRTAVV  266 (289)
Q Consensus       198 sn~~~------~--~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~-~~~r~lv~  266 (289)
                      ++...      .  ...+++.+.+.|+|||.+++..+.  ...+.+..+.+.++.. |..+.......|.- .+.+..++
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~-F~~v~~~~~~vp~~~~g~~~~~~  229 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEA-FPITEYYTANIPTYPSGLWTFTI  229 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHH-CCCeEEEEEEcCccccchhEEEE
Confidence            97531      1  468889999999999999986432  2345555666666666 54444443333433 35677777


Q ss_pred             EEe
Q 022962          267 CLK  269 (289)
Q Consensus       267 ~~k  269 (289)
                      +.+
T Consensus       230 as~  232 (270)
T TIGR00417       230 GSK  232 (270)
T ss_pred             EEC
Confidence            776

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK06202 hypothetical protein; Provisional

Probab=99.29  E-value=1.8e-11  Score=107.66  Aligned_cols=89  Identities=21%  Similarity=0.278  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHH----CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIA----CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~----~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.+|||||||+|.++..++..    .++.+|+|+|+|+.|++.|+++....   ++++...+..+++..   +++||+|+
T Consensus        61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~---~~~fD~V~  134 (232)
T PRK06202         61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAE---GERFDVVT  134 (232)
T ss_pred             CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEeccccccc---CCCccEEE
Confidence            679999999999999888754    24579999999999999998865433   466666666665432   37899999


Q ss_pred             EcC----ccc--HHHHHHHHccccc
Q 022962          198 ARA----VAE--MRILAEYCLPLVR  216 (289)
Q Consensus       198 sn~----~~~--~~~ll~~~~~~Lk  216 (289)
                      ++.    +.+  ...+++++.++++
T Consensus       135 ~~~~lhh~~d~~~~~~l~~~~r~~~  159 (232)
T PRK06202        135 SNHFLHHLDDAEVVRLLADSAALAR  159 (232)
T ss_pred             ECCeeecCChHHHHHHHHHHHHhcC
Confidence            994    222  4679999999987

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.28  E-value=2.7e-10  Score=95.40  Aligned_cols=98  Identities=15%  Similarity=0.081  Sum_probs=73.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..  +.+|+++|+|+.+++.++++...  .++++++++|+.++...   +.+||.|++|.
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~---~~~~d~vi~n~   85 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLP---KLQPYKVVGNL   85 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCcc---ccCCCEEEECC
Confidence            4679999999999999999876  57999999999999999988754  34799999999987643   24699999994


Q ss_pred             ccc-HHHHHHHHcc--ccccCeEEEEEE
Q 022962          201 VAE-MRILAEYCLP--LVRVGGLFVAAK  225 (289)
Q Consensus       201 ~~~-~~~ll~~~~~--~LkpgG~l~~~~  225 (289)
                      .-. ...++..+..  .+.++|.+++.+
T Consensus        86 Py~~~~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       86 PYNISTPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             CcccHHHHHHHHHhcCCCcceEEEEEEH
Confidence            211 1233332222  245888888764

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.27  E-value=1.5e-10  Score=99.04  Aligned_cols=115  Identities=12%  Similarity=0.062  Sum_probs=86.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cCCCCcCCCCceEEEEc-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAVAR-  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~~~~~~~~~fD~V~sn-  199 (289)
                      ..-|||||||||..+-.|..  ++...+|+|+|+.|++.|.+  ++..   -.++.+|+-+ +++.   +++||.++|- 
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~--~e~e---gdlil~DMG~Glpfr---pGtFDg~ISIS  120 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVE--RELE---GDLILCDMGEGLPFR---PGTFDGVISIS  120 (270)
T ss_pred             CcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHH--hhhh---cCeeeeecCCCCCCC---CCccceEEEee
Confidence            67899999999998877763  46889999999999999987  3322   2456667754 4443   4899999974 


Q ss_pred             -------Cc-------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCe
Q 022962          200 -------AV-------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS  246 (289)
Q Consensus       200 -------~~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~  246 (289)
                             +.       ..+..|+..++.+|++|++.++-.-+.....+..+++...++||.
T Consensus       121 AvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~  181 (270)
T KOG1541|consen  121 AVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFG  181 (270)
T ss_pred             eeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccC
Confidence                   21       135677888999999999999876566666666677667778875

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.26  E-value=1.9e-10  Score=107.41  Aligned_cols=138  Identities=14%  Similarity=0.080  Sum_probs=100.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-c---C---------
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-S---F---------  189 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~---~---------  189 (289)
                      .+|||+|||+|.+++.++...  .+|+|||+++++++.|++|++.++++|++++++|++++.... .   +         
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK  276 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence            479999999999999999774  599999999999999999999999989999999998753210 0   0         


Q ss_pred             CCCceEEEEcCcc--cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEE
Q 022962          190 REQYDVAVARAVA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVV  266 (289)
Q Consensus       190 ~~~fD~V~sn~~~--~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~  266 (289)
                      ...||+|+.+...  -.+.+++.+.+   |++.+|+...+  ..-..++.. |. .++++.++..++ +|....-..+++
T Consensus       277 ~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvsC~p--~tlaRDl~~-L~-~~Y~l~~v~~~DmFP~T~HvE~v~l  349 (353)
T TIGR02143       277 SYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYISCNP--ETLKANLEQ-LS-ETHRVERFALFDQFPYTHHMECGVL  349 (353)
T ss_pred             cCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEEcCH--HHHHHHHHH-Hh-cCcEEEEEEEcccCCCCCcEEEEEE
Confidence            1248999998532  13455555544   78888887654  222333332 32 359999999887 566666666766


Q ss_pred             EEe
Q 022962          267 CLK  269 (289)
Q Consensus       267 ~~k  269 (289)
                      +++
T Consensus       350 L~r  352 (353)
T TIGR02143       350 LER  352 (353)
T ss_pred             EEe
Confidence            654

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.23  E-value=4.6e-11  Score=112.46  Aligned_cols=100  Identities=19%  Similarity=0.271  Sum_probs=86.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||++||+|..++.+|...+..+|+++|+|+.+++.+++|++.++++++++.++|+..+...   .++||+|+.+..
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---~~~fD~V~lDP~  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---ERKFDVVDIDPF  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---cCCCCEEEECCC
Confidence            35899999999999999998776669999999999999999999999998899999999875321   257999999987


Q ss_pred             ccHHHHHHHHccccccCeEEEEE
Q 022962          202 AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       202 ~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .....+++.+.+.+++||.+++.
T Consensus       135 Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             CCcHHHHHHHHHHhcCCCEEEEE
Confidence            66678888877889999999975

>TIGR03438 probable methyltransferase

Probab=99.22  E-value=8.4e-11  Score=107.55  Aligned_cols=103  Identities=13%  Similarity=0.010  Sum_probs=75.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEecccccc-CCCCcCC-CCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETL-GKDVSFR-EQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~-~~~~~~~-~~fD~V~  197 (289)
                      +.+|||+|||+|..+..|+...+ ..+|+++|+|++|++.++++...... -+|.++++|+.+. ....... +...+++
T Consensus        64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~  143 (301)
T TIGR03438        64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF  143 (301)
T ss_pred             CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence            67899999999999999988765 58999999999999999988765321 2478889999763 2211111 1223333


Q ss_pred             EcC------cccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARA------VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~------~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +..      ..+...+++.+.+.|+|||.|++-
T Consensus       144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            321      234678999999999999999864

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.22  E-value=5.7e-11  Score=108.16  Aligned_cols=97  Identities=22%  Similarity=0.307  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++..|||+|||||++++.-|++. ..+|+|||-|.-+ +.|++.++.+++++ |+++++.++++..+   .++.|+|+|-
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP---~eKVDiIvSE  134 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP---VEKVDIIVSE  134 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC---ccceeEEeeh
Confidence            37899999999999999988774 7899999998766 99999999999987 99999999998654   3799999997


Q ss_pred             Ccc-------cHHHHHHHHccccccCeEEE
Q 022962          200 AVA-------EMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       200 ~~~-------~~~~ll~~~~~~LkpgG~l~  222 (289)
                      -+.       -+..++-.=-++|+|||.++
T Consensus       135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  135 WMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            322       23444444457999999987

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=4.8e-10  Score=93.20  Aligned_cols=136  Identities=14%  Similarity=0.103  Sum_probs=102.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ..-++|||||||..+-.|++.. |.....++|+|+++++...+.++.++. ++.+++.|+.+.-..    ++.|+++.|.
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~----~~VDvLvfNP  118 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRN----ESVDVLVFNP  118 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhcc----CCccEEEECC
Confidence            4579999999999998888764 678899999999999999999998887 588999998874332    7899999992


Q ss_pred             -------------------------cccHHHHHHHHccccccCeEEEEEEc-CCcHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962          201 -------------------------VAEMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASLLQLCSVE  254 (289)
Q Consensus       201 -------------------------~~~~~~ll~~~~~~LkpgG~l~~~~g-~~~~~ei~~~~~~l~~~g~~~~~~~~~~  254 (289)
                                               ..-...++.++..+|.|.|.|++..- .+..+|+   .+.++..||.......  
T Consensus       119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei---~k~l~~~g~~~~~~~~--  193 (209)
T KOG3191|consen  119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEI---LKILEKKGYGVRIAMQ--  193 (209)
T ss_pred             CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHH---HHHHhhcccceeEEEE--
Confidence                                     11257888999999999999997642 3445554   4456688886554432  


Q ss_pred             cCCCCCceEEEEEEe
Q 022962          255 SQSPFGQRTAVVCLK  269 (289)
Q Consensus       255 ~~~~~~~r~lv~~~k  269 (289)
                        ...+..++.+++-
T Consensus       194 --Rk~~~E~l~ilkf  206 (209)
T KOG3191|consen  194 --RKAGGETLSILKF  206 (209)
T ss_pred             --EecCCceEEEEEE
Confidence              2334555555543

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.20  E-value=8.4e-11  Score=101.02  Aligned_cols=100  Identities=16%  Similarity=0.259  Sum_probs=77.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..++.+|+|+.||-|.+++.+|+..+...|+|+|+++.+++.+++|++.+++++ |.++++|..++..    .+.||-|+
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----~~~~drvi  174 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----EGKFDRVI  174 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------TT-EEEEE
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC----ccccCEEE
Confidence            456899999999999999999987677899999999999999999999999975 8999999998754    37899999


Q ss_pred             EcCcccHHHHHHHHccccccCeEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~  222 (289)
                      ++-...-..++..+..++++||.+-
T Consensus       175 m~lp~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  175 MNLPESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             E--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred             ECChHHHHHHHHHHHHHhcCCcEEE
Confidence            9976666678888899999999864

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.20  E-value=1.8e-10  Score=98.39  Aligned_cols=105  Identities=21%  Similarity=0.128  Sum_probs=79.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCC-cCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV-SFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~-~~~~~fD~V~sn  199 (289)
                      +.+|||++||+|.+|+.++.. ...+|++||.++.+++.+++|++.++++ +++++++|+.+..... .....||+|+..
T Consensus        50 g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D  128 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD  128 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence            779999999999999998865 3458999999999999999999999986 6999999996542110 011247888887


Q ss_pred             C---cccHHHHHHHH--ccccccCeEEEEEEcC
Q 022962          200 A---VAEMRILAEYC--LPLVRVGGLFVAAKGH  227 (289)
Q Consensus       200 ~---~~~~~~ll~~~--~~~LkpgG~l~~~~g~  227 (289)
                      +   ......+++.+  ..+|+++|.+++++..
T Consensus       129 PPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       129 PPFFNGALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             cCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            4   22234444433  4589999999988754

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.18  E-value=3.2e-10  Score=97.02  Aligned_cols=121  Identities=12%  Similarity=0.122  Sum_probs=85.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.++..++.. ....++|+|+|+++++.++.       .+++++++|+.+ +..  ..+++||+|+++
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~~--~~~~sfD~Vi~~   82 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLEA--FPDKSFDYVILS   82 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhcccc--cCCCCcCEEEEh
Confidence            4679999999999998888755 35688999999999888754       247788888876 321  113689999998


Q ss_pred             C----cccHHHHHHHHccccccCeEEEEEEcC---------------------------C----cHHHHHHHHHHHHHhC
Q 022962          200 A----VAEMRILAEYCLPLVRVGGLFVAAKGH---------------------------D----PQEEVKNSERAVQLMG  244 (289)
Q Consensus       200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~g~---------------------------~----~~~ei~~~~~~l~~~g  244 (289)
                      .    +.+...+++++.+.++++   ++..+.                           +    ......++.+.++.+|
T Consensus        83 ~~l~~~~d~~~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G  159 (194)
T TIGR02081        83 QTLQATRNPEEILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN  159 (194)
T ss_pred             hHhHcCcCHHHHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC
Confidence            4    456778888887776543   221100                           0    0112345667788999


Q ss_pred             CeEeEEeeee
Q 022962          245 ASLLQLCSVE  254 (289)
Q Consensus       245 ~~~~~~~~~~  254 (289)
                      |++++.....
T Consensus       160 f~v~~~~~~~  169 (194)
T TIGR02081       160 LRILDRAAFD  169 (194)
T ss_pred             CEEEEEEEec
Confidence            9998887654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.18  E-value=1.2e-10  Score=103.24  Aligned_cols=102  Identities=16%  Similarity=0.202  Sum_probs=86.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCC----cCCCCceE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV----SFREQYDV  195 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~----~~~~~fD~  195 (289)
                      ..+||+|||++|+.++.+|... ++++|+.+|.+++..+.|+++.+..|+. +|+++.+++.+.-...    ...++||+
T Consensus        80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~  159 (247)
T PLN02589         80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF  159 (247)
T ss_pred             CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence            6799999999999999999876 4789999999999999999999999975 6999999997742210    01268999


Q ss_pred             EEEcCc-ccHHHHHHHHccccccCeEEEE
Q 022962          196 AVARAV-AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       196 V~sn~~-~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      |+..+- ..+...++.+.++|+|||.+++
T Consensus       160 iFiDadK~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        160 IFVDADKDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             EEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence            999864 4678888999999999999885

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.16  E-value=2.2e-11  Score=104.54  Aligned_cols=141  Identities=20%  Similarity=0.221  Sum_probs=94.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      =.++||+|||||..|..|-..  ..+++|+|+|+.|++.|.+.    |+ -=+..++++..+... ..++.||+|++..+
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK----g~-YD~L~~Aea~~Fl~~-~~~er~DLi~AaDV  197 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK----GL-YDTLYVAEAVLFLED-LTQERFDLIVAADV  197 (287)
T ss_pred             cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc----cc-hHHHHHHHHHHHhhh-ccCCcccchhhhhH
Confidence            358999999999999887654  46899999999999998873    21 112344555543321 12478999998753


Q ss_pred             ----ccHHHHHHHHccccccCeEEEEEE--cC-C------cHHHH----HHHHHHHHHhCCeEeEEeeeecCCCCC---c
Q 022962          202 ----AEMRILAEYCLPLVRVGGLFVAAK--GH-D------PQEEV----KNSERAVQLMGASLLQLCSVESQSPFG---Q  261 (289)
Q Consensus       202 ----~~~~~ll~~~~~~LkpgG~l~~~~--g~-~------~~~ei----~~~~~~l~~~g~~~~~~~~~~~~~~~~---~  261 (289)
                          ..++.++..+...|+|||.|.|..  .. +      .....    .-+...+...|++++++.....-...+   .
T Consensus       198 l~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~  277 (287)
T COG4976         198 LPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVP  277 (287)
T ss_pred             HHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCCCCC
Confidence                467899999999999999999854  11 1      11111    224456778999999887654322222   2


Q ss_pred             eEEEEEEec
Q 022962          262 RTAVVCLKS  270 (289)
Q Consensus       262 r~lv~~~k~  270 (289)
                      -.+++.+|+
T Consensus       278 G~L~iark~  286 (287)
T COG4976         278 GILVIARKK  286 (287)
T ss_pred             CceEEEecC
Confidence            346666654

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.14  E-value=2.7e-10  Score=99.69  Aligned_cols=104  Identities=13%  Similarity=0.064  Sum_probs=89.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcc
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA  202 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~  202 (289)
                      ..+||||||.|...+.+|+..|+..++|||+....+..|...+.+.+++|+.+++.|+..+......+++.|-|..+-..
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            47999999999999999999999999999999999999999999999999999999999864332223589999988322


Q ss_pred             ------------cHHHHHHHHccccccCeEEEEEEc
Q 022962          203 ------------EMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       203 ------------~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                                  ..+.+++.+.+.|+|||.|.+-..
T Consensus       130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220         130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence                        237899999999999999998664

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.12  E-value=5.1e-10  Score=107.28  Aligned_cols=97  Identities=19%  Similarity=0.233  Sum_probs=75.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC----CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC----PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~----p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      +..|+|||||+|.++...+++.    ...+|+|||.|+.++..+++.++.++. ++|+++++|++++..+    +++|+|
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----ekvDII  262 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----EKVDII  262 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----S-EEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----CceeEE
Confidence            5689999999999987665442    357999999999999888888788887 4699999999998764    689999


Q ss_pred             EEcCc------ccHHHHHHHHccccccCeEEE
Q 022962          197 VARAV------AEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       197 ~sn~~------~~~~~ll~~~~~~LkpgG~l~  222 (289)
                      ||--+      +-.++.+..+.++|||||.++
T Consensus       263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            99621      234677889999999999988

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.11  E-value=3.5e-10  Score=95.54  Aligned_cols=124  Identities=15%  Similarity=0.098  Sum_probs=88.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++++.+|||+|||.|.+.-.|... .+.+.+|||++++.+..+.++       .+.++++|+++--.. ..+++||.|+.
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~-f~d~sFD~VIl   81 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLAD-FPDQSFDYVIL   81 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhh-CCCCCccEEeh
Confidence            346899999999999987666654 588999999999987766552       367899999874221 22589999998


Q ss_pred             c----CcccHHHHHHHHccccccCeEEEEEEcC---------------C----------------cHHHHHHHHHHHHHh
Q 022962          199 R----AVAEMRILAEYCLPLVRVGGLFVAAKGH---------------D----------------PQEEVKNSERAVQLM  243 (289)
Q Consensus       199 n----~~~~~~~ll~~~~~~LkpgG~l~~~~g~---------------~----------------~~~ei~~~~~~l~~~  243 (289)
                      +    ++..++.+++++.|+   |...++..+.               .                +.-.+.+....+++.
T Consensus        82 sqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~  158 (193)
T PF07021_consen   82 SQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCREL  158 (193)
T ss_pred             HhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHC
Confidence            7    355778888887544   5555543211               0                111356667778889


Q ss_pred             CCeEeEEeeee
Q 022962          244 GASLLQLCSVE  254 (289)
Q Consensus       244 g~~~~~~~~~~  254 (289)
                      |+.+.+...+.
T Consensus       159 ~i~I~~~~~~~  169 (193)
T PF07021_consen  159 GIRIEERVFLD  169 (193)
T ss_pred             CCEEEEEEEEc
Confidence            99988877663

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.11  E-value=1.8e-10  Score=97.01  Aligned_cols=105  Identities=19%  Similarity=0.190  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC---CCCEEEEeccccccC-CCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ---LLNVQIVRGRAETLG-KDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~---l~ni~~~~~d~~~~~-~~~~~~~~fD~V  196 (289)
                      .+.+||+||||+|..|+.+|...+..+|++.|.++ .++.++.|++.++   ..++++...|+.+-. .......+||+|
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I  123 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI  123 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred             CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence            47899999999999999999876778999999999 9999999999887   246888888875521 110113589999


Q ss_pred             EEcC----cccHHHHHHHHccccccCeEEEEEEc
Q 022962          197 VARA----VAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       197 ~sn~----~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      ++..    ....+.+++.+.++|+++|.+++...
T Consensus       124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~  157 (173)
T PF10294_consen  124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK  157 (173)
T ss_dssp             EEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred             EEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            9874    34678899999999999999776553

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.10  E-value=1.1e-09  Score=95.70  Aligned_cols=102  Identities=14%  Similarity=0.008  Sum_probs=78.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHH------------HcCCCCEEEEeccccccCCCCcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS------------LTQLLNVQIVRGRAETLGKDVSF  189 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~------------~~~l~ni~~~~~d~~~~~~~~~~  189 (289)
                      +.+||+.|||.|.-.+.||..  +.+|+|+|+|+.+++.+.+...            ...-.+|+++++|+.++......
T Consensus        44 ~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~  121 (226)
T PRK13256         44 SSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN  121 (226)
T ss_pred             CCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence            679999999999999999975  7899999999999998755210            01123699999999998642122


Q ss_pred             CCCceEEEEcC----c--ccHHHHHHHHccccccCeEEEEEE
Q 022962          190 REQYDVAVARA----V--AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       190 ~~~fD~V~sn~----~--~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .++||+|+=++    +  ......++.+.++|+|||.+++..
T Consensus       122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            35799988663    2  246789999999999999998653

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.08  E-value=6e-10  Score=94.67  Aligned_cols=106  Identities=18%  Similarity=0.244  Sum_probs=78.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccC-CCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLG-KDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~-~~~~~~~~fD~V~sn  199 (289)
                      +.++||+.||||.+|+... .....+|+.||.|.+++..+++|++.++..+ +++++.|+...- .......+||+|++.
T Consensus        43 g~~vLDLFaGSGalGlEAL-SRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD  121 (183)
T PF03602_consen   43 GARVLDLFAGSGALGLEAL-SRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD  121 (183)
T ss_dssp             T-EEEETT-TTSHHHHHHH-HTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred             CCeEEEcCCccCccHHHHH-hcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence            8899999999999999854 4467899999999999999999999999875 999999976532 110124789999998


Q ss_pred             C---ccc-HHHHHHHHc--cccccCeEEEEEEcCC
Q 022962          200 A---VAE-MRILAEYCL--PLVRVGGLFVAAKGHD  228 (289)
Q Consensus       200 ~---~~~-~~~ll~~~~--~~LkpgG~l~~~~g~~  228 (289)
                      +   ... +..+++.+.  .+|+++|.+++++...
T Consensus       122 PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  122 PPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             -STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            4   223 477777766  8999999999998643

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.07  E-value=6e-09  Score=90.95  Aligned_cols=129  Identities=16%  Similarity=0.083  Sum_probs=88.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH------------cCCCCEEEEeccccccCCCCc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL------------TQLLNVQIVRGRAETLGKDVS  188 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~------------~~l~ni~~~~~d~~~~~~~~~  188 (289)
                      .+.+||+.|||.|.-.+.||..  +.+|+|+|+|+.+++.+.+....            ....+|+++++|+.++.... 
T Consensus        37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~-  113 (218)
T PF05724_consen   37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED-  113 (218)
T ss_dssp             TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC-
T ss_pred             CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh-
Confidence            3679999999999999999975  68999999999999887432111            11235899999999986532 


Q ss_pred             CCCCceEEEEcC------cccHHHHHHHHccccccCeEEEE--EE-------cCCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          189 FREQYDVAVARA------VAEMRILAEYCLPLVRVGGLFVA--AK-------GHDPQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       189 ~~~~fD~V~sn~------~~~~~~ll~~~~~~LkpgG~l~~--~~-------g~~~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                       .++||+|+=++      ....+...+.+.++|+|||.+++  ..       |+...-...++.+.+. .+|++..+...
T Consensus       114 -~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~  191 (218)
T PF05724_consen  114 -VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEEE  191 (218)
T ss_dssp             -HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEEE
T ss_pred             -cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEecc
Confidence             25799999663      23578999999999999999432  22       2222222344444444 68887777654


Q ss_pred             e
Q 022962          254 E  254 (289)
Q Consensus       254 ~  254 (289)
                      +
T Consensus       192 ~  192 (218)
T PF05724_consen  192 D  192 (218)
T ss_dssp             E
T ss_pred             c
Confidence            4

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.05  E-value=3e-09  Score=102.51  Aligned_cols=105  Identities=19%  Similarity=0.239  Sum_probs=87.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +++.+|||+|||+|.=+..+|.... .+.|+++|+++..+..+++|++++|+.|+.+.+.|...+..  .+.+.||.|+.
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~--~~~~~fD~ILv  189 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA--ALPETFDAILL  189 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh--hchhhcCeEEE
Confidence            4688999999999999999987763 47999999999999999999999999999999999887643  23467999997


Q ss_pred             cCcc--------------------------cHHHHHHHHccccccCeEEEEEEc
Q 022962          199 RAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       199 n~~~--------------------------~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      .+..                          --..+|..+.++|||||+++...-
T Consensus       190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC  243 (470)
T PRK11933        190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC  243 (470)
T ss_pred             cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence            6310                          126889999999999999976543

>PLN02823 spermine synthase

Probab=99.04  E-value=7.3e-09  Score=95.88  Aligned_cols=146  Identities=14%  Similarity=0.136  Sum_probs=102.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC----CCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~----l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..+||.||+|.|..+..+.+..+..+|++||+++++++.|++.....+    -.+++++.+|...+-..  .+++||+|+
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~--~~~~yDvIi  181 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK--RDEKFDVII  181 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh--CCCCccEEE
Confidence            568999999999988877765556799999999999999999765331    24699999999886432  246899999


Q ss_pred             EcCccc----------HHHHHH-HHccccccCeEEEEEEcCC----cHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCce
Q 022962          198 ARAVAE----------MRILAE-YCLPLVRVGGLFVAAKGHD----PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQR  262 (289)
Q Consensus       198 sn~~~~----------~~~ll~-~~~~~LkpgG~l~~~~g~~----~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r  262 (289)
                      +....+          -.++++ .+.+.|+|||.+++..+..    ..+....+.+.++.. |..+.......|.-...+
T Consensus       182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v-F~~v~~y~~~vPsf~~~w  260 (336)
T PLN02823        182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV-FKYVVPYTAHVPSFADTW  260 (336)
T ss_pred             ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHh-CCCEEEEEeecCCCCCce
Confidence            974221          246787 8999999999998765431    234455566666654 443444433334433456


Q ss_pred             EEEEEEec
Q 022962          263 TAVVCLKS  270 (289)
Q Consensus       263 ~lv~~~k~  270 (289)
                      ..++..+.
T Consensus       261 ~f~~aS~~  268 (336)
T PLN02823        261 GWVMASDH  268 (336)
T ss_pred             EEEEEeCC
Confidence            67776654

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.03  E-value=1.5e-09  Score=94.18  Aligned_cols=100  Identities=13%  Similarity=0.157  Sum_probs=76.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-----C------------------------
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-----L------------------------  171 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-----~------------------------  171 (289)
                      .+..+|||||-+|.+++.+|+.+....|.|+||++..+..|+++++...-     .                        
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            47899999999999999999999888999999999999999998764321     0                        


Q ss_pred             ------CEEEE-------eccccccCCCCcCCCCceEEEEcC----------cccHHHHHHHHccccccCeEEEEEE
Q 022962          172 ------NVQIV-------RGRAETLGKDVSFREQYDVAVARA----------VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       172 ------ni~~~-------~~d~~~~~~~~~~~~~fD~V~sn~----------~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                            |+.+.       ..|..+.     ....||+|+|-.          -..+..++..++++|.|||+|+++-
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl~~-----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFLDM-----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             cccCCcchhcccccEEEecchhhhh-----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence                  11111       1111111     135799999974          2358999999999999999999863

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.03  E-value=3.1e-09  Score=90.06  Aligned_cols=122  Identities=12%  Similarity=0.043  Sum_probs=86.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCE---------EEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcC
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWK---------VTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSF  189 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~---------V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~  189 (289)
                      +++..+||--||+|.+.+..|.......         ++|.|+++++++.+++|++..++.. |.+.+.|+.+++..   
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~---  103 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP---  103 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT---
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc---
Confidence            3578999999999999999887655555         9999999999999999999999864 89999999998732   


Q ss_pred             CCCceEEEEcC------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          190 REQYDVAVARA------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       190 ~~~fD~V~sn~------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      ++++|.|++|.            ..-+..+++++.++|++ ...++..+....++      .+...++......
T Consensus       104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~~~------~~~~~~~~~~~~~  170 (179)
T PF01170_consen  104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNRELEK------ALGLKGWRKRKLY  170 (179)
T ss_dssp             TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCHHH------HHTSTTSEEEEEE
T ss_pred             cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHHH------HhcchhhceEEEE
Confidence            37899999993            11257888999999999 44444444433322      3334566554443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.03  E-value=2.4e-09  Score=96.77  Aligned_cols=105  Identities=13%  Similarity=0.199  Sum_probs=80.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+|||+-|=||.+++..+. ....+|+.||.|..+++.+++|++.++++  ++++++.|+.++-......++||+|++
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            478999999999999998664 45568999999999999999999999974  699999999874221111368999999


Q ss_pred             cC----------cccHHHHHHHHccccccCeEEEEEEc
Q 022962          199 RA----------VAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       199 n~----------~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      .+          ..++..++..+.++|+|||.+++...
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            84          23688999999999999999987654

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.02  E-value=9.3e-09  Score=92.76  Aligned_cols=72  Identities=22%  Similarity=0.153  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++...  .+|+|+|+|+++++.++++...   ++++++++|+.+++.+.   -.+|.|++|.
T Consensus        42 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~---~~~~~vv~Nl  113 (272)
T PRK00274         42 PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE---LQPLKVVANL  113 (272)
T ss_pred             CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH---cCcceEEEeC
Confidence            47799999999999999999874  3999999999999999886642   58999999999875431   1159999994

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.02  E-value=2.7e-09  Score=100.12  Aligned_cols=128  Identities=14%  Similarity=0.156  Sum_probs=98.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCC-cCCCCceEEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDV-SFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~-~~~~~fD~V~s  198 (289)
                      |.+|||+-|=||..++..|.. ...+||.||.|..+++.|++|++.+|++  .++++++|+.++-... .-..+||+|+.
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil  296 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL  296 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence            889999999999999987754 4459999999999999999999999985  4899999998863321 11358999999


Q ss_pred             cC-------------cccHHHHHHHHccccccCeEEEEEEcC--CcHHHHH-HHHHHHHHhCCeEeEE
Q 022962          199 RA-------------VAEMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVK-NSERAVQLMGASLLQL  250 (289)
Q Consensus       199 n~-------------~~~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~-~~~~~l~~~g~~~~~~  250 (289)
                      .+             ..++..++..+.++|+|||.+++....  -..+.+. .+.+.....|.....+
T Consensus       297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~  364 (393)
T COG1092         297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI  364 (393)
T ss_pred             CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence            83             336889999999999999999987643  2334333 3445555666555444

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.01  E-value=2.2e-09  Score=96.91  Aligned_cols=99  Identities=21%  Similarity=0.339  Sum_probs=79.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +..|||+|||+|++++..|++ ...+|++||.|+ |.+.|+..++.+.+. +|.++.+.+++++.+    ++.|+|+|-.
T Consensus       178 ~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP----Ek~DviISEP  251 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP----EKVDVIISEP  251 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHh-CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc----hhccEEEecc
Confidence            789999999999999887766 578999999874 788999988887764 699999999998764    8999999986


Q ss_pred             cccH---HHHHH---HHccccccCeEEEEEEc
Q 022962          201 VAEM---RILAE---YCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       201 ~~~~---~~ll~---~~~~~LkpgG~l~~~~g  226 (289)
                      +..+   +++++   .+.++|||.|.++-..|
T Consensus       252 MG~mL~NERMLEsYl~Ark~l~P~GkMfPT~g  283 (517)
T KOG1500|consen  252 MGYMLVNERMLESYLHARKWLKPNGKMFPTVG  283 (517)
T ss_pred             chhhhhhHHHHHHHHHHHhhcCCCCcccCccc
Confidence            4321   22222   45699999999985544

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.00  E-value=1.7e-09  Score=96.89  Aligned_cols=71  Identities=23%  Similarity=0.243  Sum_probs=61.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..  ..+|+|+|+++.+++.++++...  .+|++++++|+.+++.     ..||.|++|.
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~-----~~~d~Vv~Nl   99 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL-----PEFNKVVSNL   99 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc-----hhceEEEEcC
Confidence            4789999999999999999977  46999999999999999987754  3589999999988754     3489999993

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.00  E-value=8.3e-09  Score=96.39  Aligned_cols=139  Identities=18%  Similarity=0.176  Sum_probs=87.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC----c---------C
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----S---------F  189 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~----~---------~  189 (289)
                      ..|||+-||+|.+|+.+|..  ..+|+|||+++.+++.|++|++.++++|++|++++++++....    .         .
T Consensus       198 ~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~  275 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK  275 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred             CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence            38999999999999999965  5699999999999999999999999999999998887653210    0         0


Q ss_pred             CCCceEEEEcCcc-c-HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEE
Q 022962          190 REQYDVAVARAVA-E-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVV  266 (289)
Q Consensus       190 ~~~fD~V~sn~~~-~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~  266 (289)
                      ...+|+|+..+.. . -+.+++.+.+   +. +++..+ -++.--..++.. |. .|+.+.++..++ +|....-.++++
T Consensus       276 ~~~~d~vilDPPR~G~~~~~~~~~~~---~~-~ivYvS-CnP~tlaRDl~~-L~-~~y~~~~v~~~DmFP~T~HvE~v~l  348 (352)
T PF05958_consen  276 SFKFDAVILDPPRAGLDEKVIELIKK---LK-RIVYVS-CNPATLARDLKI-LK-EGYKLEKVQPVDMFPQTHHVETVAL  348 (352)
T ss_dssp             CTTESEEEE---TT-SCHHHHHHHHH---SS-EEEEEE-S-HHHHHHHHHH-HH-CCEEEEEEEEE-SSTTSS--EEEEE
T ss_pred             hcCCCEEEEcCCCCCchHHHHHHHhc---CC-eEEEEE-CCHHHHHHHHHH-Hh-hcCEEEEEEEeecCCCCCcEEEEEE
Confidence            1368999987421 1 1233433322   23 443333 344444455433 43 499999999997 576666677777


Q ss_pred             EEec
Q 022962          267 CLKS  270 (289)
Q Consensus       267 ~~k~  270 (289)
                      ++|+
T Consensus       349 L~rk  352 (352)
T PF05958_consen  349 LERK  352 (352)
T ss_dssp             EEE-
T ss_pred             EEeC
Confidence            7764

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.98  E-value=8e-09  Score=88.43  Aligned_cols=141  Identities=14%  Similarity=0.126  Sum_probs=101.2

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCCCCc-----CCCCceEEE
Q 022962          124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVS-----FREQYDVAV  197 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~~~~-----~~~~fD~V~  197 (289)
                      +||+||||||--+..+|..+|..+..-.|.++....-.+..+...+++|+ ..+..|+.+-.-+..     ..++||+|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            59999999999999999999999999999999998888888888888774 344556654322111     236899999


Q ss_pred             EcC------cccHHHHHHHHccccccCeEEEEEEcCC------------------------cHHHHHHHHHHHHHhCCeE
Q 022962          198 ARA------VAEMRILAEYCLPLVRVGGLFVAAKGHD------------------------PQEEVKNSERAVQLMGASL  247 (289)
Q Consensus       198 sn~------~~~~~~ll~~~~~~LkpgG~l~~~~g~~------------------------~~~ei~~~~~~l~~~g~~~  247 (289)
                      |-.      ....+.+++.+.++|++||.|+++-+..                        ...+++++.+.....|+.+
T Consensus       108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l  187 (204)
T PF06080_consen  108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLEL  187 (204)
T ss_pred             ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCcc
Confidence            863      3356899999999999999998752111                        0112455666677889988


Q ss_pred             eEEeeeecCCCCCceEEEEEEe
Q 022962          248 LQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       248 ~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      .+...+  |   +-..+++++|
T Consensus       188 ~~~~~M--P---ANN~~Lvfrk  204 (204)
T PF06080_consen  188 EEDIDM--P---ANNLLLVFRK  204 (204)
T ss_pred             Cccccc--C---CCCeEEEEeC
Confidence            777533  2   3344555553

The function of this family is unknown.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.97  E-value=2.2e-09  Score=100.75  Aligned_cols=100  Identities=11%  Similarity=0.132  Sum_probs=87.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          123 LKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      .+|||+.||+|..|+.++...+ ..+|+++|+|+++++.+++|++.+++++++++++|+..+...  ..++||+|...+.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~--~~~~fDvIdlDPf  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY--RNRKFHVIDIDPF  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH--hCCCCCEEEeCCC
Confidence            5899999999999999998753 468999999999999999999999988899999999876432  1257999999987


Q ss_pred             ccHHHHHHHHccccccCeEEEEE
Q 022962          202 AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       202 ~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .....++..+.+.+++||.+++.
T Consensus       124 Gs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       124 GTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             CCcHHHHHHHHHhcccCCEEEEE
Confidence            76678999999999999999986

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.95  E-value=9e-09  Score=100.48  Aligned_cols=125  Identities=12%  Similarity=0.032  Sum_probs=97.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      .+..+||||||.|-..+.+|..+|+..++|||++...+..+...+...+++|+.+++.|+..+... ..++++|.|+.+-
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~-~~~~sv~~i~i~F  425 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND-LPNNSLDGIYILF  425 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh-cCcccccEEEEEC
Confidence            356899999999999999999999999999999999999998888889999999999888654321 1247899999983


Q ss_pred             ccc------------HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhC-CeEe
Q 022962          201 VAE------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG-ASLL  248 (289)
Q Consensus       201 ~~~------------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g-~~~~  248 (289)
                      ..+            -+.+++...+.|+|||.+.+...  ..+-...+...+...+ |+..
T Consensus       426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD--~~~y~~~~~~~~~~~~~f~~~  484 (506)
T PRK01544        426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD--IENYFYEAIELIQQNGNFEII  484 (506)
T ss_pred             CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC--CHHHHHHHHHHHHhCCCeEec
Confidence            221            27899999999999999987653  3444444455555655 6543

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=9.5e-09  Score=98.06  Aligned_cols=128  Identities=16%  Similarity=0.105  Sum_probs=98.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.++||+=||.|.+|+.+|..  ..+|+|+|+++++++.|++|++.++++|++|+.++++++.........||.|+.+.
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP  370 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP  370 (432)
T ss_pred             CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence            4679999999999999999954  67999999999999999999999999999999999999765421124789999985


Q ss_pred             cc-cH-HHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962          201 VA-EM-RILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  254 (289)
Q Consensus       201 ~~-~~-~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~  254 (289)
                      .. .. +.+++.+. .++|...+++...+   ..+..=...|...|+.+.++..++
T Consensus       371 PR~G~~~~~lk~l~-~~~p~~IvYVSCNP---~TlaRDl~~L~~~gy~i~~v~~~D  422 (432)
T COG2265         371 PRAGADREVLKQLA-KLKPKRIVYVSCNP---ATLARDLAILASTGYEIERVQPFD  422 (432)
T ss_pred             CCCCCCHHHHHHHH-hcCCCcEEEEeCCH---HHHHHHHHHHHhCCeEEEEEEEec
Confidence            32 22 36666655 46777888775543   222222345678898888888775

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.94  E-value=1.4e-08  Score=85.79  Aligned_cols=106  Identities=19%  Similarity=0.225  Sum_probs=81.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.++||+-+|||.+|+..+. ....+++.||.|.+++..+++|++.+++. +.+++..|+..+.......++||+|+..+
T Consensus        44 g~~~LDlFAGSGaLGlEAlS-RGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP  122 (187)
T COG0742          44 GARVLDLFAGSGALGLEALS-RGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP  122 (187)
T ss_pred             CCEEEEecCCccHhHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence            88999999999999999654 45789999999999999999999999964 68999999985422111123599999984


Q ss_pred             c-----ccHHHHHH--HHccccccCeEEEEEEcCC
Q 022962          201 V-----AEMRILAE--YCLPLVRVGGLFVAAKGHD  228 (289)
Q Consensus       201 ~-----~~~~~ll~--~~~~~LkpgG~l~~~~g~~  228 (289)
                      .     .+....+.  .-..+|+|+|.++++....
T Consensus       123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         123 PYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            1     11122222  2468899999999998754

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.94  E-value=6.4e-09  Score=91.22  Aligned_cols=120  Identities=12%  Similarity=0.009  Sum_probs=73.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHH-HHHHHH--HcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVF-LEHAVS--LTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~-a~~~~~--~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ++.+|||+|||||.++..+++. +..+|+|+|+++.++.. ++++.+  ..+..|++  +.+.+++..  ++ ..||+++
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~~~--d~-~~~Dvsf  148 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR--YVTPADIFP--DF-ATFDVSF  148 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc--cCCHhHcCC--Cc-eeeeEEE
Confidence            3779999999999999999875 56799999999988765 333222  12333444  223333321  11 2577666


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEEE------cC----------C---cHHHHHHHHHHHHHhCCeEeEEe
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAAK------GH----------D---PQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~------g~----------~---~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      +.    +..++..+..+|++ |.+++..      |.          +   +..-+.++...+...||.+..+.
T Consensus       149 iS----~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (228)
T TIGR00478       149 IS----LISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKII  216 (228)
T ss_pred             ee----hHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEE
Confidence            44    23356777778888 7776432      11          0   11223445555667899877765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.94  E-value=3.6e-09  Score=96.37  Aligned_cols=73  Identities=19%  Similarity=0.204  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-CCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.++..++..  ..+|+|+|+|+.+++.++++....+ ..+++++++|+.+...     ..||.|++|
T Consensus        36 ~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-----~~~d~VvaN  108 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-----PYFDVCVAN  108 (294)
T ss_pred             CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-----cccCEEEec
Confidence            4789999999999999998875  4689999999999999999988766 4589999999987643     468999999


Q ss_pred             C
Q 022962          200 A  200 (289)
Q Consensus       200 ~  200 (289)
                      .
T Consensus       109 l  109 (294)
T PTZ00338        109 V  109 (294)
T ss_pred             C
Confidence            4

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.93  E-value=3e-08  Score=90.94  Aligned_cols=137  Identities=15%  Similarity=0.093  Sum_probs=104.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-cccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ..|..|||==||||.+.+.....  +++++|+|++.+|+.-|+.|.+.++++...++.. |+..++..   +++||.|++
T Consensus       196 ~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~---~~~vdaIat  270 (347)
T COG1041         196 KRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLR---DNSVDAIAT  270 (347)
T ss_pred             ccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCC---CCccceEEe
Confidence            35889999999999988886644  7899999999999999999999999888877777 99998754   246999999


Q ss_pred             cC---------cc----cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEE
Q 022962          199 RA---------VA----EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAV  265 (289)
Q Consensus       199 n~---------~~----~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv  265 (289)
                      .+         ..    =+..+++.+.++|++||++++..+.+..++       +...||+++.......+. .-.|.+.
T Consensus       271 DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~-------~~~~~f~v~~~~~~~~H~-sLtR~i~  342 (347)
T COG1041         271 DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHE-------LEELGFKVLGRFTMRVHG-SLTRVIY  342 (347)
T ss_pred             cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhh-------HhhcCceEEEEEEEeecC-ceEEEEE
Confidence            83         11    268899999999999999998776333333       336899988776543121 1235555


Q ss_pred             EEEe
Q 022962          266 VCLK  269 (289)
Q Consensus       266 ~~~k  269 (289)
                      ++++
T Consensus       343 v~~~  346 (347)
T COG1041         343 VVRK  346 (347)
T ss_pred             EEec
Confidence            5543

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.93  E-value=3.5e-08  Score=90.91  Aligned_cols=103  Identities=16%  Similarity=0.202  Sum_probs=90.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ...|.+|+|+=||-|.+++.+|... ..+|+|+|+|+.++.++++|++.|++.+ |+.+++|..++....   +.||-|+
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDrIi  261 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---GVADRII  261 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---ccCCEEE
Confidence            4458999999999999999999763 4459999999999999999999999987 999999999986532   6799999


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ++-...-..++..+.+.+++||.+-+..
T Consensus       262 m~~p~~a~~fl~~A~~~~k~~g~iHyy~  289 (341)
T COG2520         262 MGLPKSAHEFLPLALELLKDGGIIHYYE  289 (341)
T ss_pred             eCCCCcchhhHHHHHHHhhcCcEEEEEe
Confidence            9988877889999999999999987654

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=1.2e-09  Score=87.72  Aligned_cols=74  Identities=15%  Similarity=0.218  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      |.+++|+|||+|.+++..+. +....|.|+|+++++++.++.|++++.+ ++.++++|+.++...   .+.||.++.|.
T Consensus        49 gkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~---~g~fDtaviNp  122 (185)
T KOG3420|consen   49 GKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELK---GGIFDTAVINP  122 (185)
T ss_pred             CcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhcc---CCeEeeEEecC
Confidence            88999999999998866553 3456899999999999999999999988 589999999998654   37899999994

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.93  E-value=7.3e-09  Score=91.56  Aligned_cols=92  Identities=22%  Similarity=0.258  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ...+|+|||+|+|.++..+++.+|+.+++..|. +..++.+++      .++|+++.+|+.+ +    ++. +|+++.+.
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~-~----~P~-~D~~~l~~  166 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD-P----LPV-ADVYLLRH  166 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT-C----CSS-ESEEEEES
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh-h----hcc-ccceeeeh
Confidence            456899999999999999999999999999998 777777777      4589999999973 2    235 99999874


Q ss_pred             c------ccHHHHHHHHccccccC--eEEEEEE
Q 022962          201 V------AEMRILAEYCLPLVRVG--GLFVAAK  225 (289)
Q Consensus       201 ~------~~~~~ll~~~~~~Lkpg--G~l~~~~  225 (289)
                      +      .....+|+.++..|+||  |++++..
T Consensus       167 vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  167 VLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             SGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             hhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            3      34678999999999999  9999764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.92  E-value=2.7e-08  Score=85.10  Aligned_cols=126  Identities=18%  Similarity=0.183  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn-  199 (289)
                      ++..|.|+|||.+.++-.+.   ...+|+..|+-..               |-.+..+|+..+|.+   +++.|++++. 
T Consensus        72 ~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~---------------n~~Vtacdia~vPL~---~~svDv~VfcL  130 (219)
T PF05148_consen   72 KSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP---------------NPRVTACDIANVPLE---DESVDVAVFCL  130 (219)
T ss_dssp             TTS-EEEES-TT-HHHHH-----S---EEEEESS-S---------------STTEEES-TTS-S-----TT-EEEEEEES
T ss_pred             CCEEEEECCCchHHHHHhcc---cCceEEEeeccCC---------------CCCEEEecCccCcCC---CCceeEEEEEh
Confidence            36789999999998663332   2458999998431               223567899888875   4889999965 


Q ss_pred             Cc--ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecCC
Q 022962          200 AV--AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRR  272 (289)
Q Consensus       200 ~~--~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~~  272 (289)
                      ++  -++..+++++.|+|||||.|.+..-..+-+.+....+.++..||++....     .....-.++.++|...
T Consensus       131 SLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d-----~~n~~F~~f~F~K~~~  200 (219)
T PF05148_consen  131 SLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD-----ESNKHFVLFEFKKIRK  200 (219)
T ss_dssp             ---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-------STTEEEEEEEE-SS
T ss_pred             hhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc-----cCCCeEEEEEEEEcCc
Confidence            43  47999999999999999999987655555566777778889999887642     1235567777777654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.92  E-value=4.9e-08  Score=85.55  Aligned_cols=129  Identities=20%  Similarity=0.226  Sum_probs=94.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn-  199 (289)
                      +...|.|+|||-+-++.    . -..+|+..|+-+               -|-+++.+|+.+++.+   +++.|++++. 
T Consensus       180 ~~~vIaD~GCGEakiA~----~-~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~---d~svDvaV~CL  236 (325)
T KOG3045|consen  180 KNIVIADFGCGEAKIAS----S-ERHKVHSFDLVA---------------VNERVIACDMRNVPLE---DESVDVAVFCL  236 (325)
T ss_pred             CceEEEecccchhhhhh----c-cccceeeeeeec---------------CCCceeeccccCCcCc---cCcccEEEeeH
Confidence            46789999999997544    2 235899999732               1456677899998765   4899999865 


Q ss_pred             C--cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecCCCCCCC
Q 022962          200 A--VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKY  277 (289)
Q Consensus       200 ~--~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~~~p~~~  277 (289)
                      +  ..++..+++++.|+|++||.+++..-...-+++.....++...||.+.... +    ....-+++.+.|...  ++-
T Consensus       237 SLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d-~----~n~~F~lfefkK~~~--~k~  309 (325)
T KOG3045|consen  237 SLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD-V----SNKYFTLFEFKKTPK--PKA  309 (325)
T ss_pred             hhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh-h----hcceEEEEEEecCCc--ccc
Confidence            3  458999999999999999999987655566677778888999999876553 1    234556666766543  444


Q ss_pred             CC
Q 022962          278 PR  279 (289)
Q Consensus       278 pr  279 (289)
                      |+
T Consensus       310 ~k  311 (325)
T KOG3045|consen  310 PK  311 (325)
T ss_pred             cc
Confidence            44

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.92  E-value=1e-09  Score=95.12  Aligned_cols=95  Identities=17%  Similarity=0.117  Sum_probs=69.0

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC--
Q 022962          124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA--  200 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--  200 (289)
                      .++|+|||+|.-++.+|..+  .+|+|+|+|++|++.|++.-..... ...++...+..++...   +++.|+|+|-.  
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~---e~SVDlI~~Aqa~  110 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG---EESVDLITAAQAV  110 (261)
T ss_pred             eEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC---CcceeeehhhhhH
Confidence            89999999998778888664  4899999999999988874322211 1134444444444322   48999999863  


Q ss_pred             -cccHHHHHHHHccccccCe-EEEE
Q 022962          201 -VAEMRILAEYCLPLVRVGG-LFVA  223 (289)
Q Consensus       201 -~~~~~~ll~~~~~~LkpgG-~l~~  223 (289)
                       .-+.+++.+.++++||++| .+.+
T Consensus       111 HWFdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  111 HWFDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             HhhchHHHHHHHHHHcCCCCCEEEE
Confidence             3478999999999999887 4443

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.92  E-value=7.2e-09  Score=86.12  Aligned_cols=74  Identities=14%  Similarity=0.096  Sum_probs=61.3

Q ss_pred             EEEeCChHHHHHHHHHHHHcC---CCCEEEEeccccccCCCCcCCCCceEEEEcC----cccHHHHHHHHccccccCeEE
Q 022962          149 TLLESMNKRCVFLEHAVSLTQ---LLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGGLF  221 (289)
Q Consensus       149 ~~iD~s~~~l~~a~~~~~~~~---l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~~~ll~~~~~~LkpgG~l  221 (289)
                      +|+|+|+.|++.|+++.+..+   ..+++++++|+++++..   +++||+|++..    +.+...+++++.++|||||.+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l   77 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFD---DCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV   77 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCC---CCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence            589999999999987655322   34799999999998754   37899999873    567899999999999999999


Q ss_pred             EEEE
Q 022962          222 VAAK  225 (289)
Q Consensus       222 ~~~~  225 (289)
                      ++..
T Consensus        78 ~i~d   81 (160)
T PLN02232         78 SILD   81 (160)
T ss_pred             EEEE
Confidence            8654

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.89  E-value=1.1e-08  Score=92.89  Aligned_cols=77  Identities=10%  Similarity=0.022  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC-CCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~-~~~fD~V~s  198 (289)
                      ++..++|.+||.|..+..++...+ .++|+|+|.|+.+++.+++....  .++++++++|..++...... -.++|.|++
T Consensus        19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~   96 (296)
T PRK00050         19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILL   96 (296)
T ss_pred             CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence            477999999999999999998875 68999999999999999987765  45799999999886432110 027999998


Q ss_pred             c
Q 022962          199 R  199 (289)
Q Consensus       199 n  199 (289)
                      +
T Consensus        97 D   97 (296)
T PRK00050         97 D   97 (296)
T ss_pred             C
Confidence            7

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.88  E-value=5.2e-08  Score=86.92  Aligned_cols=71  Identities=20%  Similarity=0.243  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCce---EEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYD---VAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD---~V~  197 (289)
                      ++.+|||||||+|.++..++...  .+|+++|+|+.+++.++++...  ..+++++++|+.+++..     .||   +|+
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~-----~~d~~~~vv   99 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP-----DFPKQLKVV   99 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh-----HcCCcceEE
Confidence            47899999999999999999875  4699999999999999887643  35799999999887642     355   899


Q ss_pred             EcC
Q 022962          198 ARA  200 (289)
Q Consensus       198 sn~  200 (289)
                      +|-
T Consensus       100 sNl  102 (253)
T TIGR00755       100 SNL  102 (253)
T ss_pred             EcC
Confidence            984

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.86  E-value=4.3e-09  Score=90.87  Aligned_cols=130  Identities=15%  Similarity=0.166  Sum_probs=96.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC--CCEEEEeccccccCCCCcCCCCceEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL--LNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l--~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      .+.+.+|||.|+|-|+.++..+.. ...+|+.+|.++..++.|.-|-=.-++  .+|+++.+|+.++-.. ..+++||+|
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-~~D~sfDaI  209 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD-FDDESFDAI  209 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc-CCccccceE
Confidence            345899999999999999886644 455999999999999888765322222  2589999999886543 125789999


Q ss_pred             EEcC----cc---cHHHHHHHHccccccCeEEEEEEcCCc-----HHHHHHHHHHHHHhCCeEeEE
Q 022962          197 VARA----VA---EMRILAEYCLPLVRVGGLFVAAKGHDP-----QEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       197 ~sn~----~~---~~~~ll~~~~~~LkpgG~l~~~~g~~~-----~~ei~~~~~~l~~~g~~~~~~  250 (289)
                      +-..    .+   --+++.++++++|||||.++-+.|...     ..-...+++.|++.||..++.
T Consensus       210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~  275 (287)
T COG2521         210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK  275 (287)
T ss_pred             eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence            9874    11   136889999999999999998876321     222355677888999986554

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=6.6e-08  Score=90.42  Aligned_cols=110  Identities=20%  Similarity=0.205  Sum_probs=88.1

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDV  195 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~--~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~  195 (289)
                      +.++|.+|||+|++.|.=+..+|+..++  ..|+|+|+++..+..+++|++++|+.|+.+++.|...+.......++||.
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~  232 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR  232 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence            4567899999999999999888887653  56799999999999999999999999988888887755432211236999


Q ss_pred             EEEcC-------------------------ccc-HHHHHHHHccccccCeEEEEEEcC
Q 022962          196 AVARA-------------------------VAE-MRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       196 V~sn~-------------------------~~~-~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      |+..+                         .+. -.++|+.+.++|||||.++...-.
T Consensus       233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS  290 (355)
T COG0144         233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS  290 (355)
T ss_pred             EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence            99873                         111 368999999999999999976543

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.81  E-value=6.6e-09  Score=90.16  Aligned_cols=101  Identities=16%  Similarity=0.207  Sum_probs=77.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC-CCCcCCCCceEEEEc
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG-KDVSFREQYDVAVAR  199 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~--~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~-~~~~~~~~fD~V~sn  199 (289)
                      .+||+||||.|.....+.+..|+  .+|+++|.|+.+++..+++..... +++.....|+..-. ......+++|.|++-
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLI  151 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEE
Confidence            38999999999999998887766  999999999999999998766543 34544444554322 111235789999875


Q ss_pred             ----Cc--ccHHHHHHHHccccccCeEEEEE
Q 022962          200 ----AV--AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ----~~--~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                          |+  ..+...++.+.++|||||.+++-
T Consensus       152 FvLSAi~pek~~~a~~nl~~llKPGG~llfr  182 (264)
T KOG2361|consen  152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFR  182 (264)
T ss_pred             EEEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence                33  35789999999999999999975

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.81  E-value=1.1e-08  Score=84.90  Aligned_cols=74  Identities=18%  Similarity=0.174  Sum_probs=56.0

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .|+|+.||.|..++.+|+.  ..+|+|||+++..++.|+.|++.+|.. +|+++++|+.++.........||+|++.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            6999999999999999987  458999999999999999999999964 7999999999875431111228999987

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.80  E-value=2.2e-07  Score=82.66  Aligned_cols=137  Identities=17%  Similarity=0.144  Sum_probs=97.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC----CCCEEEEeccccccCCCCcCCC-CceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFRE-QYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~----l~ni~~~~~d~~~~~~~~~~~~-~fD~V  196 (289)
                      ..+||=||-|.|..+..+.+..+..+|++||+++..++.|++......    -++++++.+|...+-..  ..+ +||+|
T Consensus        77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~--~~~~~yDvI  154 (246)
T PF01564_consen   77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE--TQEEKYDVI  154 (246)
T ss_dssp             T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT--SSST-EEEE
T ss_pred             cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh--ccCCcccEE
Confidence            679999999999988887755446799999999999999999655432    24799999999886432  124 89999


Q ss_pred             EEcCcc--------cHHHHHHHHccccccCeEEEEEEc--CCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCc
Q 022962          197 VARAVA--------EMRILAEYCLPLVRVGGLFVAAKG--HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ  261 (289)
Q Consensus       197 ~sn~~~--------~~~~ll~~~~~~LkpgG~l~~~~g--~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~  261 (289)
                      +.....        --.++++.+.+.|+|||.+++-.+  ......+..+.+.++.... .+.......|.-...
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~~~~vP~~~~~  228 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP-QVKPYTAYVPSYGSG  228 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS-EEEEEEEECTTSCSS
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC-ceEEEEEEcCeeccc
Confidence            987432        137899999999999999997543  3445666777777777666 333333334544444

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.80  E-value=6.1e-09  Score=87.10  Aligned_cols=94  Identities=22%  Similarity=0.300  Sum_probs=78.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      .+.+.|+|+|||.+++..|.+  .-+|+|||.+++..+.|.+|..-.|..|++++.+|+.++..     +..|+|+|--.
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-----e~ADvvicEml  105 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-----ENADVVICEML  105 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-----cccceeHHHHh
Confidence            357899999999999888765  67999999999999999999988899899999999999865     46899999732


Q ss_pred             ------ccHHHHHHHHccccccCeEEE
Q 022962          202 ------AEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       202 ------~~~~~ll~~~~~~LkpgG~l~  222 (289)
                            .....++..+..+|+.+|.++
T Consensus       106 DTaLi~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         106 DTALIEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             hHHhhcccccHHHHHHHHHhhcCCccc
Confidence                  223455666666899999887

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.79  E-value=1.4e-07  Score=85.12  Aligned_cols=144  Identities=17%  Similarity=0.170  Sum_probs=106.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC----CCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~----l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..+||=||-|.|..+-.+.+..+-.+++.||++++.++.+++......    -++++++.+|..++-..  ..++||+|+
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~--~~~~fDvIi  154 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD--CEEKFDVII  154 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh--CCCcCCEEE
Confidence            359999999999999888877777899999999999999999765543    24689999999886543  235899999


Q ss_pred             EcCccc--------HHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCc-eEEEE
Q 022962          198 ARAVAE--------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAVV  266 (289)
Q Consensus       198 sn~~~~--------~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~-r~lv~  266 (289)
                      +....+        -..+++.|.+.|+++|.++.-.+.  .+.+++..+.+.++.. |..........|.-.++ +..++
T Consensus       155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~v-f~~~~~~~~~ipt~~~g~~~f~~  233 (282)
T COG0421         155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRV-FSIVPPYVAPIPTYPSGFWGFIV  233 (282)
T ss_pred             EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhh-ccccccceeccceecCCceEEEE
Confidence            985432        389999999999999999987543  2345667777777766 66555544434444444 33444


Q ss_pred             EE
Q 022962          267 CL  268 (289)
Q Consensus       267 ~~  268 (289)
                      ..
T Consensus       234 ~s  235 (282)
T COG0421         234 AS  235 (282)
T ss_pred             ee
Confidence            43

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.79  E-value=7.5e-07  Score=76.99  Aligned_cols=145  Identities=20%  Similarity=0.187  Sum_probs=99.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +++|.+||-+|..+|.----++... +.+.|+|||.|+.....+-..+++-  +||-.+..|+.....-...-+.+|+|+
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI~  148 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVIF  148 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEEE
Confidence            4468999999999999777777654 5899999999997766666555543  489999999976433222336899999


Q ss_pred             Ec-Cc-ccHHHHHHHHccccccCeEEEEEEc-------CCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEE
Q 022962          198 AR-AV-AEMRILAEYCLPLVRVGGLFVAAKG-------HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCL  268 (289)
Q Consensus       198 sn-~~-~~~~~ll~~~~~~LkpgG~l~~~~g-------~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~  268 (289)
                      +. +. ...+.++..+..+||+||.+++..-       .+..+-+.+..+.+++.||++.+...++   |+...+++++.
T Consensus       149 ~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le---Py~~dH~~vv~  225 (229)
T PF01269_consen  149 QDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE---PYERDHAMVVG  225 (229)
T ss_dssp             EE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T---TTSTTEEEEEE
T ss_pred             ecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC---CCCCCcEEEEE
Confidence            98 33 3456777888899999999997641       1334445555666778899999887763   55444544443

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.77  E-value=1.3e-07  Score=83.52  Aligned_cols=122  Identities=16%  Similarity=0.128  Sum_probs=88.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      ..++||||+|.|..+..++..+.  +|++.|.|..|...+++    -|   .+++  ++.++...   +.+||+|.|-.+
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~----kg---~~vl--~~~~w~~~---~~~fDvIscLNv  160 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSK----KG---FTVL--DIDDWQQT---DFKFDVISCLNV  160 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHh----CC---CeEE--ehhhhhcc---CCceEEEeehhh
Confidence            56899999999999999987764  79999999998655544    23   3333  33333322   368999999754


Q ss_pred             ----ccHHHHHHHHccccccCeEEEEE----------EcC---------------CcHHHHHHHHHHHHHhCCeEeEEee
Q 022962          202 ----AEMRILAEYCLPLVRVGGLFVAA----------KGH---------------DPQEEVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       202 ----~~~~~ll~~~~~~LkpgG~l~~~----------~g~---------------~~~~ei~~~~~~l~~~g~~~~~~~~  252 (289)
                          ..+..+++.+++.|+|+|++++.          .|.               ..++.+..+.+.++..||++.....
T Consensus       161 LDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr  240 (265)
T PF05219_consen  161 LDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR  240 (265)
T ss_pred             hhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence                35789999999999999999842          232               1233455555778899999998887


Q ss_pred             eecCC
Q 022962          253 VESQS  257 (289)
Q Consensus       253 ~~~~~  257 (289)
                      ++|-.
T Consensus       241 ~PYLc  245 (265)
T PF05219_consen  241 LPYLC  245 (265)
T ss_pred             cCccc
Confidence            65543

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=2.8e-08  Score=84.56  Aligned_cols=104  Identities=19%  Similarity=0.242  Sum_probs=80.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcC----------CCCEEEEeccccccCCC
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQ----------LLNVQIVRGRAETLGKD  186 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~----------l~ni~~~~~d~~~~~~~  186 (289)
                      +.+|.+.||+|+|||+++-.+++..  ++..++|||.-++.++.+++|++..-          ..++.++.+|......+
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e  159 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE  159 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence            4469999999999999999999664  34445999999999999999887643          13588889998876554


Q ss_pred             CcCCCCceEEEEcCcccHHHHHHHHccccccCeEEEEEEcC
Q 022962          187 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       187 ~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                         ..+||.|.+.|-+  ..+.++....|++||.+++..+.
T Consensus       160 ---~a~YDaIhvGAaa--~~~pq~l~dqL~~gGrllip~~~  195 (237)
T KOG1661|consen  160 ---QAPYDAIHVGAAA--SELPQELLDQLKPGGRLLIPVGQ  195 (237)
T ss_pred             ---cCCcceEEEccCc--cccHHHHHHhhccCCeEEEeecc
Confidence               3789999998533  23344444679999999987764

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.74  E-value=6.5e-07  Score=77.35  Aligned_cols=123  Identities=14%  Similarity=0.073  Sum_probs=88.7

Q ss_pred             EEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcCcc-
Q 022962          125 LVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARAVA-  202 (289)
Q Consensus       125 VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~-  202 (289)
                      |.||||--|.+++.|.+.....+++++|+++.-++.|+++++..|+. +|++..+|-.+.-.+   .+..|.|+.-++. 
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~---~e~~d~ivIAGMGG   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP---GEDVDTIVIAGMGG   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G---GG---EEEEEEE-H
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC---CCCCCEEEEecCCH
Confidence            68999999999999998876678999999999999999999999976 499999996543221   1347888877554 


Q ss_pred             -cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962          203 -EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  254 (289)
Q Consensus       203 -~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~  254 (289)
                       .+..+++.....++....|++ .+......+..   .+..+||.+.+...+.
T Consensus        78 ~lI~~ILe~~~~~~~~~~~lIL-qP~~~~~~LR~---~L~~~gf~I~~E~lv~  126 (205)
T PF04816_consen   78 ELIIEILEAGPEKLSSAKRLIL-QPNTHAYELRR---WLYENGFEIIDEDLVE  126 (205)
T ss_dssp             HHHHHHHHHTGGGGTT--EEEE-EESS-HHHHHH---HHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHhhHHHhccCCeEEE-eCCCChHHHHH---HHHHCCCEEEEeEEEe
Confidence             578889888888877667765 44455555544   5669999999887663

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.74  E-value=6.7e-08  Score=83.49  Aligned_cols=103  Identities=23%  Similarity=0.269  Sum_probs=86.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEecccccc-CCC--CcCCCCceE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETL-GKD--VSFREQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~-~~~--~~~~~~fD~  195 (289)
                      ++.++||||.=||+.++..|...| +++|+++|+++...+.+.+..+..|.. .|+++++++.+. ...  ....++||+
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf  152 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF  152 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence            367999999999999999998876 589999999999999999999999985 599999988652 110  012368999


Q ss_pred             EEEcCcc-cHHHHHHHHccccccCeEEEE
Q 022962          196 AVARAVA-EMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       196 V~sn~~~-~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      ++..+.. ++....+++.++||+||.+++
T Consensus       153 aFvDadK~nY~~y~e~~l~Llr~GGvi~~  181 (237)
T KOG1663|consen  153 AFVDADKDNYSNYYERLLRLLRVGGVIVV  181 (237)
T ss_pred             EEEccchHHHHHHHHHHHhhcccccEEEE
Confidence            9999754 567899999999999999986

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.73  E-value=1.5e-07  Score=84.06  Aligned_cols=103  Identities=13%  Similarity=0.103  Sum_probs=84.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~--~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ...+||||.||.|..-+.....+|.  .+|...|.|+..++..++.+++.|++++ +|.++|+.+...-....-..|+++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i  214 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI  214 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence            4679999999999998888777776  7999999999999999999999999986 999999987533222234579988


Q ss_pred             EcCc----c---cHHHHHHHHccccccCeEEEE
Q 022962          198 ARAV----A---EMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       198 sn~~----~---~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      ..++    .   -+...++.+..++.|||+++.
T Consensus       215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIy  247 (311)
T PF12147_consen  215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIY  247 (311)
T ss_pred             EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEE
Confidence            8752    2   256778899999999999975

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.69  E-value=7.3e-08  Score=89.11  Aligned_cols=105  Identities=11%  Similarity=0.109  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-------C---CCEEEEeccccccCCC--C-
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-------L---LNVQIVRGRAETLGKD--V-  187 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-------l---~ni~~~~~d~~~~~~~--~-  187 (289)
                      ++.+|||||||-|.-..-.... .-..++|+|++...++.|++..+...       .   -...++.+|...-...  . 
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            4789999999977654555543 45799999999999999999873321       0   1356777777542111  0 


Q ss_pred             cCCCCceEEEEcC--------cccHHHHHHHHccccccCeEEEEEEc
Q 022962          188 SFREQYDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       188 ~~~~~fD~V~sn~--------~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      ....+||+|-|.-        ....+.+++.+...|+|||+|+....
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            1125899999872        23567899999999999999997653

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.68  E-value=1.7e-07  Score=95.11  Aligned_cols=108  Identities=9%  Similarity=-0.013  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC----C--------------------------------------CCEEEEEeCChHH
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIAC----P--------------------------------------DWKVTLLESMNKR  157 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~----p--------------------------------------~~~V~~iD~s~~~  157 (289)
                      +++..++|-+||||.+.+..|...    |                                      ..+++|+|+++++
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            457899999999999999987631    1                                      2379999999999


Q ss_pred             HHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcCc--------ccHHHHHHHHccccc---cCeEEEEEE
Q 022962          158 CVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARAV--------AEMRILAEYCLPLVR---VGGLFVAAK  225 (289)
Q Consensus       158 l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~~--------~~~~~ll~~~~~~Lk---pgG~l~~~~  225 (289)
                      ++.|++|+..+|+.+ |++.++|+.++.... ..++||+|++|..        .+...+.+.....++   +|+.+++..
T Consensus       269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt  347 (702)
T PRK11783        269 IQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS  347 (702)
T ss_pred             HHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence            999999999999865 999999998875431 1257999999941        233444444444444   899998887


Q ss_pred             cCC
Q 022962          226 GHD  228 (289)
Q Consensus       226 g~~  228 (289)
                      +..
T Consensus       348 ~~~  350 (702)
T PRK11783        348 SSP  350 (702)
T ss_pred             CCH
Confidence            753

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.67  E-value=7.1e-08  Score=83.13  Aligned_cols=126  Identities=13%  Similarity=0.106  Sum_probs=84.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      ..++||.|+|-|..+-.+.... .-+|..||.+++.++.|++........-.++++..++++.+.   ..+||+|.+.- 
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~---~~~YDlIW~QW~  131 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE---EGKYDLIWIQWC  131 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-------TT-EEEEEEES-
T ss_pred             cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC---CCcEeEEEehHh
Confidence            5699999999999887654322 369999999999999998754432212267888889888653   36899999983 


Q ss_pred             -----cccHHHHHHHHccccccCeEEEEEEcC---C----------cHHHHHHHHHHHHHhCCeEeEEe
Q 022962          201 -----VAEMRILAEYCLPLVRVGGLFVAAKGH---D----------PQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 -----~~~~~~ll~~~~~~LkpgG~l~~~~g~---~----------~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                           -.++-.+++.|...|+|+|.+++-...   .          .......+.+.++++|+.++...
T Consensus       132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~  200 (218)
T PF05891_consen  132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE  200 (218)
T ss_dssp             GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred             hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence                 347889999999999999999863210   0          00012445567779999988765

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK04148 hypothetical protein; Provisional

Probab=98.64  E-value=1.2e-07  Score=76.08  Aligned_cols=83  Identities=10%  Similarity=0.069  Sum_probs=61.2

Q ss_pred             CCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-
Q 022962          122 NLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~-~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn-  199 (289)
                      +.+|+|||||+|. .+..|+..  +.+|+|+|+++.+++.++++       .+.++.+|+.+....  .-+.+|+|.|- 
T Consensus        17 ~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~--~y~~a~liysir   85 (134)
T PRK04148         17 NKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLE--IYKNAKLIYSIR   85 (134)
T ss_pred             CCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHH--HHhcCCEEEEeC
Confidence            5789999999996 88888854  68999999999987777663       367889999876543  24679999974 


Q ss_pred             CcccHHHHHHHHcccc
Q 022962          200 AVAEMRILAEYCLPLV  215 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~L  215 (289)
                      ...++..-+-++.+-+
T Consensus        86 pp~el~~~~~~la~~~  101 (134)
T PRK04148         86 PPRDLQPFILELAKKI  101 (134)
T ss_pred             CCHHHHHHHHHHHHHc
Confidence            5555544444444444

>PRK00536 speE spermidine synthase; Provisional

Probab=98.64  E-value=8e-07  Score=79.45  Aligned_cols=139  Identities=9%  Similarity=-0.032  Sum_probs=97.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH----cCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL----TQLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~----~~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      +..+||=||-|.|..+..+.+. +. +|+.||+++++++.+++....    +.-.+++++.. +.+     ...++||+|
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-----~~~~~fDVI  143 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-----LDIKKYDLI  143 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-----ccCCcCCEE
Confidence            3679999999999988888754 54 999999999999999994332    22235777652 211     113689999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEEEcCC--cHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  270 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~~--~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~  270 (289)
                      ++....+ +.+.+.+++.|+|||.++.-.+..  ..+.+..+.+.++. .|..+.......| ..|.+..+++.+.
T Consensus       144 IvDs~~~-~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v~~y~~~vp-~~g~wgf~~aS~~  216 (262)
T PRK00536        144 ICLQEPD-IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD-FFSIAMPFVAPLR-ILSNKGYIYASFK  216 (262)
T ss_pred             EEcCCCC-hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh-hCCceEEEEecCC-CcchhhhheecCC
Confidence            9986543 678899999999999999755432  35666777777777 6765544332223 2467777777654

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=1.5e-06  Score=76.80  Aligned_cols=131  Identities=15%  Similarity=0.115  Sum_probs=101.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      +.+|.+|++-|+|+|.++..+|+.. |.++++..|..+...+.|.+..++.|+. |+++.+-|+....+.. .+..+|.|
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~-ks~~aDaV  181 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI-KSLKADAV  181 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc-cccccceE
Confidence            3469999999999999999999875 7899999999999999999999999985 7999999998765432 14689999


Q ss_pred             EEcCcccHHHHHHHHccccccCe-EEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          197 VARAVAEMRILAEYCLPLVRVGG-LFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG-~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      +..-.+++..+ .-+..+||.+| +++...  .-.|.+....+++..+||..+++..+
T Consensus       182 FLDlPaPw~Ai-Pha~~~lk~~g~r~csFS--PCIEQvqrtce~l~~~gf~~i~~vEv  236 (314)
T KOG2915|consen  182 FLDLPAPWEAI-PHAAKILKDEGGRLCSFS--PCIEQVQRTCEALRSLGFIEIETVEV  236 (314)
T ss_pred             EEcCCChhhhh-hhhHHHhhhcCceEEecc--HHHHHHHHHHHHHHhCCCceEEEEEe
Confidence            98866665444 34445888766 555433  34566667778888999976666544

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.59  E-value=2.2e-07  Score=84.28  Aligned_cols=106  Identities=18%  Similarity=0.204  Sum_probs=85.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .++.+|||+|+|.|.=+..+|.... .+.|++.|++...+..++++++++|..++.+...|....... .....||.|+.
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~-~~~~~fd~Vlv  162 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPK-KPESKFDRVLV  162 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHH-HHTTTEEEEEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccc-ccccccchhhc
Confidence            3578999999999999999998765 689999999999999999999999999999988887765321 11246999998


Q ss_pred             cC-------------------------cc-cHHHHHHHHcccc----ccCeEEEEEEc
Q 022962          199 RA-------------------------VA-EMRILAEYCLPLV----RVGGLFVAAKG  226 (289)
Q Consensus       199 n~-------------------------~~-~~~~ll~~~~~~L----kpgG~l~~~~g  226 (289)
                      .+                         +. --..+++.+.+++    ||||+++...-
T Consensus       163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC  220 (283)
T PF01189_consen  163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC  220 (283)
T ss_dssp             ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred             CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence            73                         00 1368899999999    99999987653

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.59  E-value=2.1e-07  Score=75.26  Aligned_cols=59  Identities=25%  Similarity=0.348  Sum_probs=53.8

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc
Q 022962          124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET  182 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~  182 (289)
                      +++|+|||.|..++.++...+.++|+++|+++.+.+.++++++.+++.++++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            48999999999999999888888999999999999999999999988889888877764

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.56  E-value=7.2e-06  Score=71.81  Aligned_cols=128  Identities=13%  Similarity=0.150  Sum_probs=84.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      |.+||-+|=+-- .|+++|...+..+|+-+|+++..+++.++.+++.|++ |+.++.|+.+--+ ..+.++||++++++.
T Consensus        45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP-~~~~~~fD~f~TDPP  121 (243)
T PF01861_consen   45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLP-EELRGKFDVFFTDPP  121 (243)
T ss_dssp             T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS----TTTSS-BSEEEE---
T ss_pred             CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCC-HHHhcCCCEEEeCCC
Confidence            789999996554 5788887777789999999999999999999999996 9999999987322 245689999999964


Q ss_pred             ---ccHHHHHHHHccccccCe-EEEEEEcCCc--HHHHHHHHHHHHHhCCeEeEEee
Q 022962          202 ---AEMRILAEYCLPLVRVGG-LFVAAKGHDP--QEEVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       202 ---~~~~~ll~~~~~~LkpgG-~l~~~~g~~~--~~ei~~~~~~l~~~g~~~~~~~~  252 (289)
                         ..+.-++......||..| ..++-.+...  ..+...+++.+...|+.+.++.+
T Consensus       122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~  178 (243)
T PF01861_consen  122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIP  178 (243)
T ss_dssp             SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHh
Confidence               456788888888999666 5555555443  44556778888899999888764

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=7.3e-08  Score=91.75  Aligned_cols=65  Identities=26%  Similarity=0.259  Sum_probs=58.5

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG  184 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~  184 (289)
                      .++.+..++|++||||.+|+.+|+.  ..+|+|||+++.+++.|+.|++.+|++|.+|+++.++++-
T Consensus       380 ~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~  444 (534)
T KOG2187|consen  380 GLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLF  444 (534)
T ss_pred             CCCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhhcc
Confidence            3455789999999999999999854  6799999999999999999999999999999999888764

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=8.4e-06  Score=69.30  Aligned_cols=147  Identities=19%  Similarity=0.216  Sum_probs=105.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++++.+||=+|+-+|.-.--++...+.+.|+|||.|+.....+-..+++-  .|+-.+.+|+.....-..+-+..|+|+.
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~  151 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIYQ  151 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEEE
Confidence            34689999999999998778887778889999999998877666666553  4888888898754322122367999998


Q ss_pred             c-Ccc-cHHHHHHHHccccccCeEEEEEE-c------CCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962          199 R-AVA-EMRILAEYCLPLVRVGGLFVAAK-G------HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       199 n-~~~-~~~~ll~~~~~~LkpgG~l~~~~-g------~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      . +.. ..+.+...+..+||+||.+++.. .      .+..+-+++..+.++..+|++.+...+   .|+...|++++.+
T Consensus       152 DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~L---ePye~DH~~i~~~  228 (231)
T COG1889         152 DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDL---EPYEKDHALIVAK  228 (231)
T ss_pred             ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEecc---CCcccceEEEEEe
Confidence            7 333 45667788899999999777543 1      233444555566788899999988766   4666666666554


Q ss_pred             c
Q 022962          270 S  270 (289)
Q Consensus       270 ~  270 (289)
                      .
T Consensus       229 ~  229 (231)
T COG1889         229 Y  229 (231)
T ss_pred             e
Confidence            3

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.49  E-value=2.3e-06  Score=84.13  Aligned_cols=79  Identities=11%  Similarity=0.119  Sum_probs=56.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC--------CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC--CCcCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP--------DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK--DVSFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p--------~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~--~~~~~~  191 (289)
                      ..+|||.|||+|.+.+.++...+        ...++|+|+++.++..++.++...+.-.+.+.+.|......  .....+
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~  111 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD  111 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence            56999999999999988876543        25799999999999999999887762235555555332111  011235


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      .||+|++|+
T Consensus       112 ~fD~IIgNP  120 (524)
T TIGR02987       112 LFDIVITNP  120 (524)
T ss_pred             cccEEEeCC
Confidence            799999993

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.48  E-value=5.4e-07  Score=81.36  Aligned_cols=129  Identities=12%  Similarity=0.123  Sum_probs=88.2

Q ss_pred             cCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHH
Q 022962           79 RKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRC  158 (289)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l  158 (289)
                      +..+++.+++...+++..++.--.                 +++..++|+|||-|.-.+-.-++ .-.+++|+||.+..+
T Consensus        92 q~S~Ii~lRnfNNwIKs~LI~~y~-----------------~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI  153 (389)
T KOG1975|consen   92 QRSPIIFLRNFNNWIKSVLINLYT-----------------KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSI  153 (389)
T ss_pred             ccCceeehhhhhHHHHHHHHHHHh-----------------ccccccceeccCCcccHhHhhhh-cccceEeeehhhccH
Confidence            345677777776655544433221                 24778999999999866665544 346899999999999


Q ss_pred             HHHHHHHHHcCC--C----CEEEEeccccccCCCC--cCCC-CceEEEEc-----C---cccHHHHHHHHccccccCeEE
Q 022962          159 VFLEHAVSLTQL--L----NVQIVRGRAETLGKDV--SFRE-QYDVAVAR-----A---VAEMRILAEYCLPLVRVGGLF  221 (289)
Q Consensus       159 ~~a~~~~~~~~l--~----ni~~~~~d~~~~~~~~--~~~~-~fD~V~sn-----~---~~~~~~ll~~~~~~LkpgG~l  221 (289)
                      ..|+...+...-  +    .+.|+.+|...-....  .++. +||+|-|.     +   .+..+.++..+.+.|+|||+|
T Consensus       154 ~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~F  233 (389)
T KOG1975|consen  154 NQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVF  233 (389)
T ss_pred             HHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEE
Confidence            999987654321  1    2678888875421111  1123 39999886     2   345688999999999999999


Q ss_pred             EEEE
Q 022962          222 VAAK  225 (289)
Q Consensus       222 ~~~~  225 (289)
                      +-..
T Consensus       234 IgTi  237 (389)
T KOG1975|consen  234 IGTI  237 (389)
T ss_pred             EEec
Confidence            8644

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.47  E-value=2.3e-07  Score=78.38  Aligned_cols=93  Identities=20%  Similarity=0.265  Sum_probs=62.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC----CcC---CCCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD----VSF---REQY  193 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~----~~~---~~~f  193 (289)
                      +.+|||+||++|.++-.+.... +.++|+|+|+.+.           ....++.++++|+.+....    ...   .++|
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~   92 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKF   92 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccCc
Confidence            5899999999999998888765 5689999999875           2234677777777543111    001   2589


Q ss_pred             eEEEEcCc------------c---cHHHHHHHHccccccCeEEEEEE
Q 022962          194 DVAVARAV------------A---EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       194 D~V~sn~~------------~---~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      |+|+|...            .   -....+.-+...|+|||.+++-.
T Consensus        93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~  139 (181)
T PF01728_consen   93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV  139 (181)
T ss_dssp             SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence            99999841            0   12334446667899999988643

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.44  E-value=5.4e-07  Score=77.34  Aligned_cols=100  Identities=12%  Similarity=0.094  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCCChHHHHH----HHH----CC-CCEEEEEeCChHHHHHHHHH--------------HHHc-----C----
Q 022962          122 NLKLVDVGTGAGLPGLVL----AIA----CP-DWKVTLLESMNKRCVFLEHA--------------VSLT-----Q----  169 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~l----a~~----~p-~~~V~~iD~s~~~l~~a~~~--------------~~~~-----~----  169 (289)
                      ..+|+..||+||-=.-.|    ...    .+ ..+|+|.|+|+.+++.|++-              .++.     +    
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~  111 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR  111 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence            569999999999744333    331    11 36999999999999999862              1111     1    


Q ss_pred             C-----CCEEEEeccccccCCCCcCCCCceEEEEcCc------ccHHHHHHHHccccccCeEEEEE
Q 022962          170 L-----LNVQIVRGRAETLGKDVSFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       170 l-----~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~------~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +     ++|+|.+.|+.+..   ...+.||+|+|+.+      +....+++.+.+.|+|||+|++-
T Consensus       112 v~~~lr~~V~F~~~NL~~~~---~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  112 VKPELRKMVRFRRHNLLDPD---PPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             E-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             EChHHcCceEEEecccCCCC---cccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence            0     35899999988821   12478999999964      34589999999999999999873

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=1.1e-06  Score=78.10  Aligned_cols=73  Identities=19%  Similarity=0.171  Sum_probs=61.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++..||+||+|.|.++..|++.  +.+|+|||+++.++..+++...  ..+|++++++|+.....+..  ..++.|++|
T Consensus        30 ~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l--~~~~~vVaN  102 (259)
T COG0030          30 PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSL--AQPYKVVAN  102 (259)
T ss_pred             CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhh--cCCCEEEEc
Confidence            4789999999999999999977  5689999999999999988655  33589999999998865311  068999999

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.40  E-value=3.6e-06  Score=77.15  Aligned_cols=150  Identities=14%  Similarity=0.101  Sum_probs=89.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHH-------CCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCCcCCC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIA-------CPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFRE  191 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~-------~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~~~~~  191 (289)
                      ++.+|+|-+||+|.+.+.+...       .+..+++|+|+++.++..|+.+..-.+.+  +..+.++|....+.. ...+
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~-~~~~  124 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKF-IKNQ  124 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSC-TST-
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccc-cccc
Confidence            3678999999999988776653       36789999999999999999887665543  346777876543321 0136


Q ss_pred             CceEEEEcC----c--c-------------------cHHHHHHHHccccccCeEEEEEEcCCcH---HHHHHHHHHHHHh
Q 022962          192 QYDVAVARA----V--A-------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQ---EEVKNSERAVQLM  243 (289)
Q Consensus       192 ~fD~V~sn~----~--~-------------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~---~ei~~~~~~l~~~  243 (289)
                      +||+|++|.    .  .                   .--.++..+...|++||++.+..+....   ..-..+.+.+-+.
T Consensus       125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~  204 (311)
T PF02384_consen  125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLEN  204 (311)
T ss_dssp             -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHH
T ss_pred             ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhh
Confidence            899999993    1  0                   0125788899999999998877643211   1112233333333


Q ss_pred             CCeEeEEeeeec---CCCCCceEEEEEEecCC
Q 022962          244 GASLLQLCSVES---QSPFGQRTAVVCLKSRR  272 (289)
Q Consensus       244 g~~~~~~~~~~~---~~~~~~r~lv~~~k~~~  272 (289)
                      + .+..+..+..   ......-.++++.|..+
T Consensus       205 ~-~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~  235 (311)
T PF02384_consen  205 G-YIEAVISLPSNLFKPTGVPTSILILNKKKP  235 (311)
T ss_dssp             E-EEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred             c-hhhEEeecccceecccCcCceEEEEeeccc
Confidence            3 3445544421   12223455777777653

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.38  E-value=6.1e-07  Score=81.33  Aligned_cols=101  Identities=15%  Similarity=0.155  Sum_probs=72.9

Q ss_pred             CCeEEEEcCCCChHHHHHH----HHCC----CCEEEEEeCChHHHHHHHHHH------HH-----------------cC-
Q 022962          122 NLKLVDVGTGAGLPGLVLA----IACP----DWKVTLLESMNKRCVFLEHAV------SL-----------------TQ-  169 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la----~~~p----~~~V~~iD~s~~~l~~a~~~~------~~-----------------~~-  169 (289)
                      .-+|+..||.||-=.-.+|    ...+    ..+|+|+|+|+.+++.|++-.      +.                 .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            4699999999997443333    3222    368999999999999998741      00                 01 


Q ss_pred             ------C-CCEEEEeccccccCCCCcCCCCceEEEEcCc------ccHHHHHHHHccccccCeEEEEE
Q 022962          170 ------L-LNVQIVRGRAETLGKDVSFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       170 ------l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~------~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                            + ..|+|.+.|+.+.+.+  ..+.||+|+|+.+      +....+++.+.+.|+|||+|++-
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~--~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWA--VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCc--cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                  1 2478888888763321  1378999999853      35789999999999999998763

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.38  E-value=1.7e-06  Score=77.70  Aligned_cols=143  Identities=16%  Similarity=0.147  Sum_probs=77.6

Q ss_pred             CCeEEEEcCCCChHH-HHHHHHC-CCCEEEEEeCChHHHHHHHHHHH-HcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPG-LVLAIAC-PDWKVTLLESMNKRCVFLEHAVS-LTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~-l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~-~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.+|+=||||+=-++ +.++..+ ++..|+++|+++++++.+++..+ ..|+. +++|+.+|+.+...+.   ..||+|+
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl---~~~DvV~  197 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL---KEYDVVF  197 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc---ccCCEEE
Confidence            459999999965544 5566543 57899999999999999999877 45554 5999999998765432   5799999


Q ss_pred             EcCcc-----cHHHHHHHHccccccCeEEEEEEcCCcHHHH-HHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecC
Q 022962          198 ARAVA-----EMRILAEYCLPLVRVGGLFVAAKGHDPQEEV-KNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR  271 (289)
Q Consensus       198 sn~~~-----~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei-~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~  271 (289)
                      ..+..     +-.++++.+.+.++||..+++-.+.. ...+ .....-....||+...+   -+|..+--...|+++|..
T Consensus       198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G-lR~~LYp~vd~~~l~gf~~~~~---~hP~~~ViNSvv~~rk~~  273 (276)
T PF03059_consen  198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHG-LRSFLYPVVDPEDLRGFEVLAV---VHPTDEVINSVVFARKKQ  273 (276)
T ss_dssp             E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--G-GGGGSS----TGGGTTEEEEEE---E---TT---EEEEE----
T ss_pred             EhhhcccccchHHHHHHHHHhhCCCCcEEEEecchh-hHHHcCCCCChHHCCCeEEEEE---ECCCCCceeEEEEEEecc
Confidence            87633     67899999999999999988754321 1111 00000001238865544   367766677788888764

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.37  E-value=2.9e-06  Score=78.97  Aligned_cols=105  Identities=14%  Similarity=0.111  Sum_probs=83.1

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCC--------------------------------C-------EEEEEeCChHHH
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPD--------------------------------W-------KVTLLESMNKRC  158 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~--------------------------------~-------~V~~iD~s~~~l  158 (289)
                      ..+++..++|==||||.+.+..|...++                                +       .++|+|+++.++
T Consensus       188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i  267 (381)
T COG0116         188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI  267 (381)
T ss_pred             CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence            4455679999999999999999877542                                1       377999999999


Q ss_pred             HHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcC-----------cc-cHHHHHHHHccccccCeEEEEEE
Q 022962          159 VFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA-----------VA-EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       159 ~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~-----------~~-~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +.|+.|++..|+.. |+|.++|+.++..+.   +.+|+|+||.           ++ -++.+.+.+++.++--+.+++..
T Consensus       268 ~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~---~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         268 EGAKANARAAGVGDLIEFKQADATDLKEPL---EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             HHHHHHHHhcCCCceEEEEEcchhhCCCCC---CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            99999999999865 999999999987642   6899999994           22 24566667777777667776643

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.36  E-value=9.6e-07  Score=76.32  Aligned_cols=104  Identities=13%  Similarity=0.105  Sum_probs=64.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHH-------HcCC--CCEEEEeccccccCCCCcCCC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS-------LTQL--LNVQIVRGRAETLGKDVSFRE  191 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~-------~~~l--~ni~~~~~d~~~~~~~~~~~~  191 (289)
                      ++...+|||||.|...+..|...+..+.+|||+.+...+.|+...+       ..|.  .++++.++|..+.......=.
T Consensus        42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s  121 (205)
T PF08123_consen   42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS  121 (205)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence            4789999999999998888877776779999999998888876443       2343  358888888765431100003


Q ss_pred             CceEEEEcCcc---cHHHHHHHHccccccCeEEEEE
Q 022962          192 QYDVAVARAVA---EMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       192 ~fD~V~sn~~~---~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..|+|++|...   +...-+.+....||+|-+++-.
T Consensus       122 ~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  122 DADVVFVNNTCFDPDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             C-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             CCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence            47999999653   3444445666778888887643

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.34  E-value=1.2e-06  Score=77.49  Aligned_cols=74  Identities=23%  Similarity=0.210  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +++++.||++|-|||.++..|...  +.+|+|+|+++.|++..++..+....+ ..+++++|....+.     -.||.++
T Consensus        56 ~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-----P~fd~cV  128 (315)
T KOG0820|consen   56 LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-----PRFDGCV  128 (315)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-----cccceee
Confidence            456889999999999999888765  789999999999999999877765544 49999999987754     3599999


Q ss_pred             Ec
Q 022962          198 AR  199 (289)
Q Consensus       198 sn  199 (289)
                      +|
T Consensus       129 sN  130 (315)
T KOG0820|consen  129 SN  130 (315)
T ss_pred             cc
Confidence            98

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.34  E-value=3e-06  Score=69.89  Aligned_cols=102  Identities=19%  Similarity=0.204  Sum_probs=77.1

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC--CCCcCCCCce
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG--KDVSFREQYD  194 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~--~~~~~~~~fD  194 (289)
                      +.+.+.-||++|.|||.++-.+... .+...+++||.|++....+.+.     .+.++++++|+.++.  .....+..||
T Consensus        45 ~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~~~ii~gda~~l~~~l~e~~gq~~D  119 (194)
T COG3963          45 DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPGVNIINGDAFDLRTTLGEHKGQFFD  119 (194)
T ss_pred             CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCCccccccchhhHHHHHhhcCCCeee
Confidence            3445779999999999999886544 4668999999999887766652     235678999998875  2212245799


Q ss_pred             EEEEc------CcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVAR------AVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn------~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .|+|.      .+...-++++.+...|..||.++-.
T Consensus       120 ~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf  155 (194)
T COG3963         120 SVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF  155 (194)
T ss_pred             eEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            99997      2334568899999999999999854

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.32  E-value=1.3e-06  Score=73.71  Aligned_cols=97  Identities=14%  Similarity=0.121  Sum_probs=76.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      .+.+|||+|+|+|..++..|+. ....|++.|+.+.....++.|++.+|. +|.+.+.|+-. .     +..||+|+...
T Consensus        79 rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~-----~~~~Dl~LagD  150 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-S-----PPAFDLLLAGD  150 (218)
T ss_pred             ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-C-----CcceeEEEeec
Confidence            4889999999999999998865 567899999999999999999999997 69998888765 2     26799999875


Q ss_pred             cc----cHHHHHHHHccccccCeEEEEEEc
Q 022962          201 VA----EMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       201 ~~----~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      +-    .-..+++ ....|+..|.-++.-.
T Consensus       151 lfy~~~~a~~l~~-~~~~l~~~g~~vlvgd  179 (218)
T COG3897         151 LFYNHTEADRLIP-WKDRLAEAGAAVLVGD  179 (218)
T ss_pred             eecCchHHHHHHH-HHHHHHhCCCEEEEeC
Confidence            31    2345555 6777777787776543

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.32  E-value=2.6e-06  Score=77.31  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=48.8

Q ss_pred             CCeEEEEcCCCChH-HHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc-CCC-CEEEEeccccc-c-CCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLP-GLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-QLL-NVQIVRGRAET-L-GKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~-~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-~l~-ni~~~~~d~~~-~-~~~~~~~~~fD~V  196 (289)
                      ..++||||||.-++ .+..++.+ +++++|.|+++..++.|+++++.+ +++ +|+++...-.+ + ..-....+.||+.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence            56899999998865 45555554 899999999999999999999999 886 48887653222 1 1111123689999


Q ss_pred             EEc
Q 022962          197 VAR  199 (289)
Q Consensus       197 ~sn  199 (289)
                      +||
T Consensus       182 mCN  184 (299)
T PF05971_consen  182 MCN  184 (299)
T ss_dssp             EE-
T ss_pred             ecC
Confidence            999

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.28  E-value=3e-06  Score=68.89  Aligned_cols=75  Identities=17%  Similarity=0.253  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHH----CCCCEEEEEeCChHHHHHHHHHHHHcC--C-CCEEEEeccccccCCCCcCCCCc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIA----CPDWKVTLLESMNKRCVFLEHAVSLTQ--L-LNVQIVRGRAETLGKDVSFREQY  193 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~----~p~~~V~~iD~s~~~l~~a~~~~~~~~--l-~ni~~~~~d~~~~~~~~~~~~~f  193 (289)
                      +..+|+|+|||-|.++..++..    .++.+|+|||.++..++.++..++..+  . .++++..+++.+...    ....
T Consensus        25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  100 (141)
T PF13679_consen   25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS----SDPP  100 (141)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc----cCCC
Confidence            3679999999999999999972    268899999999999999999988887  4 457777777765432    2456


Q ss_pred             eEEEEc
Q 022962          194 DVAVAR  199 (289)
Q Consensus       194 D~V~sn  199 (289)
                      ++++.-
T Consensus       101 ~~~vgL  106 (141)
T PF13679_consen  101 DILVGL  106 (141)
T ss_pred             eEEEEe
Confidence            777754

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.26  E-value=1.7e-05  Score=68.12  Aligned_cols=105  Identities=20%  Similarity=0.296  Sum_probs=73.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC----cC-CCCc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----SF-REQY  193 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~----~~-~~~f  193 (289)
                      +++..|+|||+-.|.|+-.+++.. ++..|+|||+.+-.           ...+|.++++|+.+-....    .. ..++
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~  112 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEALGGAPV  112 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHcCCCCc
Confidence            358899999999999999988775 44679999997732           2347999999998643210    11 2357


Q ss_pred             eEEEEcCcc---------------cHHHHHHHHccccccCeEEEE--EEcCCcHHHHHH
Q 022962          194 DVAVARAVA---------------EMRILAEYCLPLVRVGGLFVA--AKGHDPQEEVKN  235 (289)
Q Consensus       194 D~V~sn~~~---------------~~~~ll~~~~~~LkpgG~l~~--~~g~~~~~ei~~  235 (289)
                      |+|+|..-+               --...++-+..+|+|||.|++  ..|.+..+.+..
T Consensus       113 DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~  171 (205)
T COG0293         113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKA  171 (205)
T ss_pred             ceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHH
Confidence            999987311               124566778889999999985  345554444433

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.25  E-value=9.8e-06  Score=65.50  Aligned_cols=120  Identities=18%  Similarity=0.174  Sum_probs=76.0

Q ss_pred             EEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc-C------------cccHHHHHHHHc
Q 022962          147 KVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR-A------------VAEMRILAEYCL  212 (289)
Q Consensus       147 ~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn-~------------~~~~~~ll~~~~  212 (289)
                      +|+|.|+.+++++.+++..++.++. ++++++..=+.+..... .+++|+++.| +            ...--..++.+.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al   79 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-EGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL   79 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence            6999999999999999999999875 59999877666654211 1389999999 1            123456778889


Q ss_pred             cccccCeEEEEEE--cCCc-HHHHHHHHHHHH---HhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962          213 PLVRVGGLFVAAK--GHDP-QEEVKNSERAVQ---LMGASLLQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       213 ~~LkpgG~l~~~~--g~~~-~~ei~~~~~~l~---~~g~~~~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      ++|+|||.+.+..  |... .+|...+.+.++   ...|.+....++.  ....+..+++++|
T Consensus        80 ~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N--~~~~pp~l~~ieK  140 (140)
T PF06962_consen   80 ELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN--QKNNPPLLVIIEK  140 (140)
T ss_dssp             HHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS---SS---EEEEEEE
T ss_pred             HhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC--CCCCCCEEEEEEC
Confidence            9999999998764  4433 345444444433   3466666665542  2234455666654

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.25  E-value=1.7e-05  Score=70.72  Aligned_cols=131  Identities=18%  Similarity=0.166  Sum_probs=80.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH----------------cCC------------CC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL----------------TQL------------LN  172 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~----------------~~l------------~n  172 (289)
                      ++.++||||||+-+..+.-|..+ .-+|++.|.++...+.+++-.+.                -|-            ..
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            37799999999977654444332 34799999999887755442221                110            01


Q ss_pred             E-EEEeccccccCCCCc---CCCCceEEEEcC--------cccHHHHHHHHccccccCeEEEEEE---------cCCc--
Q 022962          173 V-QIVRGRAETLGKDVS---FREQYDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAK---------GHDP--  229 (289)
Q Consensus       173 i-~~~~~d~~~~~~~~~---~~~~fD~V~sn~--------~~~~~~ll~~~~~~LkpgG~l~~~~---------g~~~--  229 (289)
                      | .++..|+...+.-..   .+.+||+|+|.-        .+.+...++.+.++|||||.|++..         |...  
T Consensus       135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~  214 (256)
T PF01234_consen  135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFP  214 (256)
T ss_dssp             EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE
T ss_pred             hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecc
Confidence            3 367788876443211   234699999872        4468899999999999999999653         2110  


Q ss_pred             --HHHHHHHHHHHHHhCCeEeEEee
Q 022962          230 --QEEVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       230 --~~ei~~~~~~l~~~g~~~~~~~~  252 (289)
                        .-.-+.+.++++++|+.+.+...
T Consensus       215 ~l~l~ee~v~~al~~aG~~i~~~~~  239 (256)
T PF01234_consen  215 CLPLNEEFVREALEEAGFDIEDLEK  239 (256)
T ss_dssp             ---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred             cccCCHHHHHHHHHHcCCEEEeccc
Confidence              00113355677899999888873

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.24  E-value=5.4e-05  Score=69.73  Aligned_cols=115  Identities=19%  Similarity=0.150  Sum_probs=79.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +.++.++|||||++|.++-.+.+.  +.+|+|||..+-     .....  ...+|+.+.+|...+...   .+.+|.++|
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l-----~~~L~--~~~~V~h~~~d~fr~~p~---~~~vDwvVc  276 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPM-----AQSLM--DTGQVEHLRADGFKFRPP---RKNVDWLVC  276 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhc-----CHhhh--CCCCEEEEeccCcccCCC---CCCCCEEEE
Confidence            356899999999999999998865  569999996541     12222  224698888887766432   368999999


Q ss_pred             cCcccHHHHHHHHccccccC--eEEEEE-E--cCCcHHHHHH----HHHHHHHhCC
Q 022962          199 RAVAEMRILAEYCLPLVRVG--GLFVAA-K--GHDPQEEVKN----SERAVQLMGA  245 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~Lkpg--G~l~~~-~--g~~~~~ei~~----~~~~l~~~g~  245 (289)
                      ..+..+..+++.+.++|..|  ..+++- +  +...-+++..    +.+.+.+.|.
T Consensus       277 Dmve~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~  332 (357)
T PRK11760        277 DMVEKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGI  332 (357)
T ss_pred             ecccCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            99888888989888888766  244432 2  2233444433    3445556776

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=8.9e-07  Score=72.56  Aligned_cols=129  Identities=17%  Similarity=0.208  Sum_probs=95.0

Q ss_pred             CCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC---CCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ---LLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~---l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.+||++|.| +|.-|+++|...|...|...|-+++.+...++....+.   ++.+.++.-++..-... ....+||.|+
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq-~eq~tFDiIl  108 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQ-QEQHTFDIIL  108 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHH-HhhCcccEEE
Confidence            6789999999 67778899988899999999999999998888666552   33444444333332111 1135899999


Q ss_pred             EcC---c-ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEee
Q 022962          198 ARA---V-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       198 sn~---~-~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~  252 (289)
                      +..   + ...+.+++.+..+|+|.|..++ ..+.+.+.++..+......||.+..-..
T Consensus       109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~-fsPRRg~sL~kF~de~~~~gf~v~l~en  166 (201)
T KOG3201|consen  109 AADCLFFDEHHESLVDTIKSLLRPSGRALL-FSPRRGQSLQKFLDEVGTVGFTVCLEEN  166 (201)
T ss_pred             eccchhHHHHHHHHHHHHHHHhCcccceeE-ecCcccchHHHHHHHHHhceeEEEeccc
Confidence            874   2 2457899999999999999765 4567777888888888899987654443

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.22  E-value=3.2e-06  Score=73.13  Aligned_cols=105  Identities=17%  Similarity=0.176  Sum_probs=78.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC--
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--  200 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--  200 (289)
                      ..++|||||-|.++-.+-.. .-.+++.+|-|..|+..++.. +..++ .+....+|-+.++..   ++++|+|++.-  
T Consensus        74 p~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~---ens~DLiisSlsl  147 (325)
T KOG2940|consen   74 PTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFK---ENSVDLIISSLSL  147 (325)
T ss_pred             cceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhccccc---ccchhhhhhhhhh
Confidence            47999999999988776544 246899999999998887763 22333 255567788877654   48999999873  


Q ss_pred             --cccHHHHHHHHccccccCeEEEEE-EcCCcHHHH
Q 022962          201 --VAEMRILAEYCLPLVRVGGLFVAA-KGHDPQEEV  233 (289)
Q Consensus       201 --~~~~~~ll~~~~~~LkpgG~l~~~-~g~~~~~ei  233 (289)
                        +.+++..+.+|+..|||+|.|+.. .|.+..-|+
T Consensus       148 HW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyEL  183 (325)
T KOG2940|consen  148 HWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYEL  183 (325)
T ss_pred             hhhccCchHHHHHHHhcCCCccchhHHhccccHHHH
Confidence              446788889999999999999853 344544443

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.20  E-value=2.4e-05  Score=61.14  Aligned_cols=99  Identities=18%  Similarity=0.132  Sum_probs=68.1

Q ss_pred             EEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc--cCCCCcCCCCceEEEEcCc
Q 022962          125 LVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET--LGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       125 VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~--~~~~~~~~~~fD~V~sn~~  201 (289)
                      ++|+|||+|... .++...+. ..++++|+++.++..++......+..++.+..++...  ++...  ...||++.+...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~~  128 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFED--SASFDLVISLLV  128 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCC--CCceeEEeeeee
Confidence            999999999876 44443333 4899999999999985554433222116788888765  33321  137999943332


Q ss_pred             c---cHHHHHHHHccccccCeEEEEEEc
Q 022962          202 A---EMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       202 ~---~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      .   .....+..+.+.++|+|.+++...
T Consensus       129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~  156 (257)
T COG0500         129 LHLLPPAKALRELLRVLKPGGRLVLSDL  156 (257)
T ss_pred             hhcCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            1   257899999999999999987653

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.19  E-value=7.9e-05  Score=64.32  Aligned_cols=146  Identities=14%  Similarity=0.093  Sum_probs=109.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.++.||||=.|+++..|-+..+...+++.|+++..++.|..+...+++. .+++..+|-...-.   .+..+|.|+.-+
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~---~~d~~d~ivIAG   93 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE---LEDEIDVIVIAG   93 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC---ccCCcCEEEEeC
Confidence            56699999999999999999999999999999999999999999999874 58888888754321   134799999876


Q ss_pred             cc--cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecCCCCCCC
Q 022962          201 VA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKY  277 (289)
Q Consensus       201 ~~--~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~~~p~~~  277 (289)
                      +.  -+..++++-...|+.=-+|++ .+..+..++.+.   +...+|.++....++  .......++++++.. .+..|
T Consensus        94 MGG~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~LR~~---L~~~~~~I~~E~ile--E~~kiYEIlv~e~~~-~~~~~  165 (226)
T COG2384          94 MGGTLIREILEEGKEKLKGVERLIL-QPNIHTYELREW---LSANSYEIKAETILE--EDGKIYEILVVEKSS-KPALY  165 (226)
T ss_pred             CcHHHHHHHHHHhhhhhcCcceEEE-CCCCCHHHHHHH---HHhCCceeeeeeeec--ccCeEEEEEEEecCC-chhhh
Confidence            54  468889888888864445553 555667676664   558999988776553  334455677777664 34333

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.19  E-value=1.3e-05  Score=71.93  Aligned_cols=99  Identities=14%  Similarity=0.095  Sum_probs=71.3

Q ss_pred             CCeEEEEcCCCCh----HHHHHHHHCC-----CCEEEEEeCChHHHHHHHHH------H-HHc--------------C--
Q 022962          122 NLKLVDVGTGAGL----PGLVLAIACP-----DWKVTLLESMNKRCVFLEHA------V-SLT--------------Q--  169 (289)
Q Consensus       122 ~~~VLDiGcG~G~----~~l~la~~~p-----~~~V~~iD~s~~~l~~a~~~------~-~~~--------------~--  169 (289)
                      .-+|+-.||+||-    +++.+....+     ..+|+|.|+|..+++.|+.-      . +..              |  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5799999999996    4455555554     47999999999999999761      1 000              1  


Q ss_pred             -----C-CCEEEEeccccccCCCCcCCCCceEEEEcCcc------cHHHHHHHHccccccCeEEEE
Q 022962          170 -----L-LNVQIVRGRAETLGKDVSFREQYDVAVARAVA------EMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       170 -----l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~------~~~~ll~~~~~~LkpgG~l~~  223 (289)
                           + ++|+|-+.|+.+-..   +.+.||+|+|+.+.      .-..+++..+..|+|||+|++
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl  239 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL  239 (268)
T ss_pred             EEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence                 0 135666655544321   34679999999643      457899999999999999987

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.12  E-value=0.00013  Score=65.45  Aligned_cols=75  Identities=16%  Similarity=0.126  Sum_probs=60.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++..|+|||.|+|.++..|+...  .+|+++|+++..++.+++...  .-+|++++++|+.++............|++|
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~N  104 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDLLKNQPLLVVGN  104 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGHCSSSEEEEEEE
T ss_pred             CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHhhcCCceEEEEE
Confidence            47899999999999999999874  799999999999998888554  3348999999999876542223466788888

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.10  E-value=3.9e-05  Score=69.30  Aligned_cols=124  Identities=15%  Similarity=0.126  Sum_probs=77.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +.+|||+|||+|.-.......++ -.+++++|.|+.|++.++...+..... +.........+..   .+ ...|+|++.
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~-~~~DLvi~s  109 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL---PF-PPDDLVIAS  109 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc---cC-CCCcEEEEe
Confidence            56999999999986555555455 358999999999999999977654321 1111111111111   11 234999976


Q ss_pred             C----c--ccHHHHHHHHccccccCeEEEEEE-cC-CcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          200 A----V--AEMRILAEYCLPLVRVGGLFVAAK-GH-DPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       200 ~----~--~~~~~ll~~~~~~LkpgG~l~~~~-g~-~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      .    +  .....+++.+...+.+  .|+++. |. ...+.+.++-+.+...|+.++.=|
T Consensus       110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~APC  167 (274)
T PF09243_consen  110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAPC  167 (274)
T ss_pred             hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceECCC
Confidence            2    2  3456777777666655  665544 43 334556666677777788776544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.07  E-value=3.7e-05  Score=70.19  Aligned_cols=78  Identities=9%  Similarity=0.046  Sum_probs=62.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-c-CCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-S-FREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~-~~~~fD~V~s  198 (289)
                      +++.++|.=+|.|.-+..++...+.++|+|+|.++.+++.+++..+..+ .++++++++..++.... . ..+++|.|+.
T Consensus        20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~   98 (305)
T TIGR00006        20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGILV   98 (305)
T ss_pred             CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEEE
Confidence            4779999999999999999988777999999999999999999877653 47999999888763211 0 1246898888


Q ss_pred             c
Q 022962          199 R  199 (289)
Q Consensus       199 n  199 (289)
                      +
T Consensus        99 D   99 (305)
T TIGR00006        99 D   99 (305)
T ss_pred             e
Confidence            6

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.06  E-value=5.6e-05  Score=70.74  Aligned_cols=108  Identities=17%  Similarity=0.166  Sum_probs=87.1

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ..+++.+|||+|+-.|.=+..+|... ..+.|+|.|.+...+...+.|+.++|.+|..+.+.|..+++.. .+..+||-|
T Consensus       238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~-~~~~~fDRV  316 (460)
T KOG1122|consen  238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEK-EFPGSFDRV  316 (460)
T ss_pred             CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccc-ccCccccee
Confidence            34668999999999999887777553 4589999999999999999999999999988888888876533 244589999


Q ss_pred             EEcCc-------------------------cc-HHHHHHHHccccccCeEEEEEEc
Q 022962          197 VARAV-------------------------AE-MRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       197 ~sn~~-------------------------~~-~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      +-.|.                         .. -++++..+.+++++||+|+...-
T Consensus       317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC  372 (460)
T KOG1122|consen  317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC  372 (460)
T ss_pred             eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence            97630                         01 26888899999999999986543

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.06  E-value=2.4e-06  Score=65.59  Aligned_cols=96  Identities=20%  Similarity=0.214  Sum_probs=43.1

Q ss_pred             EEEcCCCChHHHHHHHHCCC---CEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          126 VDVGTGAGLPGLVLAIACPD---WKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       126 LDiGcG~G~~~l~la~~~p~---~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      |+|||..|..++.++...+.   .+++++|..+. .+..++.+++.++. ++++++++..+.-... ..++||+|+..+.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~-~~~~~dli~iDg~   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSL-PDGPIDLIFIDGD   78 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHH-HH--EEEEEEES-
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHc-CCCCEEEEEECCC
Confidence            68999999999888866533   37999999995 33445555555553 6999999987653211 1378999999864


Q ss_pred             ---ccHHHHHHHHccccccCeEEEE
Q 022962          202 ---AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       202 ---~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                         .....-++.+.+.|+|||.+++
T Consensus        79 H~~~~~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   79 HSYEAVLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             --HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEE
Confidence               3456677888999999999875

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.06  E-value=2.6e-05  Score=66.38  Aligned_cols=105  Identities=17%  Similarity=0.184  Sum_probs=75.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-------CCCEEEEeccccccCCCCcCCCC--
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-------LLNVQIVRGRAETLGKDVSFREQ--  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-------l~ni~~~~~d~~~~~~~~~~~~~--  192 (289)
                      ...+.|||||-|.+.+.|+-.+|+.-|.|+||-.+..++.++.++.++       ..|+.+++.+...+-......++  
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            457899999999999999999999999999999999999999888876       56788887777654322111111  


Q ss_pred             ceEEEEcC--c--------ccHHHHHHHHccccccCeEEEEEEc
Q 022962          193 YDVAVARA--V--------AEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       193 fD~V~sn~--~--------~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      =++.+...  +        ---..++.+..-+|++||.++....
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD  184 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD  184 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence            12222211  0        0124567777779999999997653

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.01  E-value=0.00011  Score=67.76  Aligned_cols=152  Identities=15%  Similarity=0.153  Sum_probs=104.6

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHH--HHHcC---C--CCEEEEeccccccCCCCcC
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHA--VSLTQ---L--LNVQIVRGRAETLGKDVSF  189 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~--~~~~~---l--~ni~~~~~d~~~~~~~~~~  189 (289)
                      +.+...+||=+|-|.|.-...+. ++| -.+|+.||.+++|++.++++  .+..+   .  .+++++..|+.++-..  -
T Consensus       286 ~~~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~--a  362 (508)
T COG4262         286 SVRGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT--A  362 (508)
T ss_pred             cccccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh--h
Confidence            34456799999999998666665 467 57999999999999999953  22221   2  3599999999887543  2


Q ss_pred             CCCceEEEEcCc-------cc--HHHHHHHHccccccCeEEEEEEcCCc-HHH-HHHHHHHHHHhCCeEeEEeeeecCCC
Q 022962          190 REQYDVAVARAV-------AE--MRILAEYCLPLVRVGGLFVAAKGHDP-QEE-VKNSERAVQLMGASLLQLCSVESQSP  258 (289)
Q Consensus       190 ~~~fD~V~sn~~-------~~--~~~ll~~~~~~LkpgG~l~~~~g~~~-~~e-i~~~~~~l~~~g~~~~~~~~~~~~~~  258 (289)
                      .+.||.|+..-.       ..  -.++..-+.+.|+++|.+++..|... ..+ .=.+.+.++++|+...-..  .|.-.
T Consensus       363 ~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyh--v~VPT  440 (508)
T COG4262         363 ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYH--VHVPT  440 (508)
T ss_pred             cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeE--EecCc
Confidence            368999998621       11  24677788899999999998766432 222 2234456778997544322  23345


Q ss_pred             CCceEEEEEEecCCCC
Q 022962          259 FGQRTAVVCLKSRRTP  274 (289)
Q Consensus       259 ~~~r~lv~~~k~~~~p  274 (289)
                      .|++-.++..+....+
T Consensus       441 FGeWGf~l~~~~~~~f  456 (508)
T COG4262         441 FGEWGFILAAPGDADF  456 (508)
T ss_pred             ccccceeecccccCCC
Confidence            7888888888764443

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.99  E-value=9.8e-05  Score=66.25  Aligned_cols=129  Identities=16%  Similarity=0.161  Sum_probs=88.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc--------------------------------
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--------------------------------  168 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~--------------------------------  168 (289)
                      ...+||-=|||-|.++..+|..  +..+.|.|.|--|+-..+-.....                                
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            3679999999999999999977  789999999999976655432210                                


Q ss_pred             --------CCCCEEEEeccccccCCCCcCCCCceEEEEcC----cccHHHHHHHHccccccCeEEEEEEcC-----CcH-
Q 022962          169 --------QLLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGGLFVAAKGH-----DPQ-  230 (289)
Q Consensus       169 --------~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~~~ll~~~~~~LkpgG~l~~~~g~-----~~~-  230 (289)
                              ...++....||..++-......++||+|++.-    -.++-+.++.+.++|||||..+ -.|+     ... 
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI-N~GPLlyh~~~~~  212 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI-NFGPLLYHFEPMS  212 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE-ecCCccccCCCCC
Confidence                    00134555666665533221236899999873    2367889999999999999766 2332     111 


Q ss_pred             --------HHHHHHHHHHHHhCCeEeEEee
Q 022962          231 --------EEVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       231 --------~ei~~~~~~l~~~g~~~~~~~~  252 (289)
                              -..+++....+..||++++...
T Consensus       213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  213 IPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence                    1135566667789999886654

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.96  E-value=4.5e-05  Score=65.49  Aligned_cols=107  Identities=19%  Similarity=0.216  Sum_probs=82.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +|.+||.||-|-|++.-.+..+.|. +=+-||..+..+...+...-.. -+||.++.+.+++.... ..++.||-|.-..
T Consensus       101 kggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~-L~d~~FDGI~yDT  177 (271)
T KOG1709|consen  101 KGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNT-LPDKHFDGIYYDT  177 (271)
T ss_pred             CCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhcc-ccccCcceeEeec
Confidence            5899999999999988777665555 4457999999887776643222 24899999999986443 2357799999886


Q ss_pred             c----ccHHHHHHHHccccccCeEEEEEEcCCcH
Q 022962          201 V----AEMRILAEYCLPLVRVGGLFVAAKGHDPQ  230 (289)
Q Consensus       201 ~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~  230 (289)
                      .    .++..+.+.+.++|||+|.|-+.-|....
T Consensus       178 y~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~  211 (271)
T KOG1709|consen  178 YSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGAD  211 (271)
T ss_pred             hhhHHHHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence            5    36778888999999999999988765433

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.95  E-value=5.1e-06  Score=71.40  Aligned_cols=76  Identities=14%  Similarity=0.151  Sum_probs=63.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCC-CCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFR-EQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~-~~fD~V~sn  199 (289)
                      ...|+|.-||.|..++..|..  ...|++||+|+..++.|++|++-.|++ +|+|++||+.++....+++ ..+|+|+..
T Consensus        95 ~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s  172 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS  172 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence            568999999999999999977  458999999999999999999999986 4999999999875432222 346788866

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.90  E-value=0.00014  Score=61.19  Aligned_cols=94  Identities=16%  Similarity=0.198  Sum_probs=62.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-cccccCC-----CCcCCCC
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGK-----DVSFREQ  192 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d~~~~~~-----~~~~~~~  192 (289)
                      .++.+|||+||-.|.|+-..-+.. |.+.|.|||+-.-           ...+.+.++++ |+.+...     +...+.+
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~  136 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRP  136 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence            458899999999999998766654 8999999998431           12334566665 6654311     0112368


Q ss_pred             ceEEEEcC--------cccH-------HHHHHHHccccccCeEEEEE
Q 022962          193 YDVAVARA--------VAEM-------RILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       193 fD~V~sn~--------~~~~-------~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .|+|+|..        ..+.       ..++-.+...++|+|.|++-
T Consensus       137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK  183 (232)
T KOG4589|consen  137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK  183 (232)
T ss_pred             ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence            99999962        1122       23444556778899999863

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.90  E-value=2.4e-05  Score=73.14  Aligned_cols=103  Identities=20%  Similarity=0.265  Sum_probs=82.8

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ++.++..++|+|||.|.+...++. +..+.++|+|.++.-+..+.......++++ -.++.+|+...+.+   ++.||.+
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fe---dn~fd~v  182 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFE---DNTFDGV  182 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCC---ccccCcE
Confidence            445577899999999999988885 467899999999988888888776666654 44467777776654   4789999


Q ss_pred             EEcC----cccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARA----VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~----~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      -+..    ..+...++++++++++|||+++..
T Consensus       183 ~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  183 RFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             EEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence            9873    457889999999999999999964

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.88  E-value=0.00042  Score=60.59  Aligned_cols=140  Identities=17%  Similarity=0.156  Sum_probs=92.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++..+||||+-||.++-.+.+ ....+|+|||..-..+.+-   .+. + .+| .+...++..+... .+.+..|++++.
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq-~gAk~VyavDVG~~Ql~~k---LR~-d-~rV~~~E~tN~r~l~~~-~~~~~~d~~v~D  151 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQ-RGAKHVYAVDVGYGQLHWK---LRN-D-PRVIVLERTNVRYLTPE-DFTEKPDLIVID  151 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHH-cCCcEEEEEEccCCccCHh---Hhc-C-CcEEEEecCChhhCCHH-HcccCCCeEEEE
Confidence            488999999999999887664 4678999999976543322   111 1 243 4445677766543 344578999987


Q ss_pred             -CcccHHHHHHHHccccccCeEEEEEE------c------------C-CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCC
Q 022962          200 -AVAEMRILAEYCLPLVRVGGLFVAAK------G------------H-DPQEEVKNSERAVQLMGASLLQLCSVESQSPF  259 (289)
Q Consensus       200 -~~~~~~~ll~~~~~~LkpgG~l~~~~------g------------~-~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~  259 (289)
                       ++-.+..++..+..+++++|.++...      |            + .+..-+.++.+.+...||.+..+..-..+...
T Consensus       152 vSFISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~~  231 (245)
T COG1189         152 VSFISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGGK  231 (245)
T ss_pred             eehhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCCC
Confidence             56678889999999999999888542      1            1 12233455666677889999988754444444


Q ss_pred             CceEEEEE
Q 022962          260 GQRTAVVC  267 (289)
Q Consensus       260 ~~r~lv~~  267 (289)
                      |-...++.
T Consensus       232 GNiE~l~~  239 (245)
T COG1189         232 GNIEFLLL  239 (245)
T ss_pred             CcEeeeee
Confidence            43333333

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.85  E-value=7.3e-05  Score=70.46  Aligned_cols=102  Identities=20%  Similarity=0.246  Sum_probs=80.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCC--EEEEeccccccCCCCcCCCCceEEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~n--i~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +.+|||.=+|||.=|+..+.+.+ ..+|++-|+|+++++.+++|++.++++.  +++.+.|+..+-.  ...+.||+|=.
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~--~~~~~fD~IDl  127 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY--SRQERFDVIDL  127 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC--HSTT-EEEEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh--hccccCCEEEe
Confidence            45899999999999999999854 4799999999999999999999999875  8899999988642  12478999999


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEEE
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .++.....++..+.+.++.||.+.+..
T Consensus       128 DPfGSp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  128 DPFGSPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             --SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence            999999999999999999999999753

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK10742 putative methyltransferase; Provisional

Probab=97.82  E-value=8.4e-05  Score=65.69  Aligned_cols=77  Identities=19%  Similarity=0.242  Sum_probs=63.7

Q ss_pred             CCCC--eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc------CC---CCEEEEeccccccCCCCc
Q 022962          120 NSNL--KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT------QL---LNVQIVRGRAETLGKDVS  188 (289)
Q Consensus       120 ~~~~--~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~------~l---~ni~~~~~d~~~~~~~~~  188 (289)
                      +++.  +|||+-+|+|..|+.+|..  +++|+++|.++.....++++.+..      +.   .+++++++|..++-..  
T Consensus        85 k~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~--  160 (250)
T PRK10742         85 KGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD--  160 (250)
T ss_pred             CCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh--
Confidence            3455  8999999999999999965  678999999999999999998885      32   4699999999886432  


Q ss_pred             CCCCceEEEEcC
Q 022962          189 FREQYDVAVARA  200 (289)
Q Consensus       189 ~~~~fD~V~sn~  200 (289)
                      ...+||+|+...
T Consensus       161 ~~~~fDVVYlDP  172 (250)
T PRK10742        161 ITPRPQVVYLDP  172 (250)
T ss_pred             CCCCCcEEEECC
Confidence            235799999985

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=7.1e-05  Score=69.16  Aligned_cols=101  Identities=20%  Similarity=0.283  Sum_probs=87.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      ..+|+|-=||||+=|+.+|...+..+|++-|+|+++++.+++|++.+...+..+++.|+..+-..  ....||+|=...+
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~--~~~~fd~IDiDPF  130 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE--LHRAFDVIDIDPF  130 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh--cCCCccEEecCCC
Confidence            46899999999999999999987779999999999999999999999555777788888876432  1368999999988


Q ss_pred             ccHHHHHHHHccccccCeEEEEE
Q 022962          202 AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       202 ~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..+..+++.+.+.++.||.+.+-
T Consensus       131 GSPaPFlDaA~~s~~~~G~l~vT  153 (380)
T COG1867         131 GSPAPFLDAALRSVRRGGLLCVT  153 (380)
T ss_pred             CCCchHHHHHHHHhhcCCEEEEE
Confidence            88889999999999999999864

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.80  E-value=0.00027  Score=60.99  Aligned_cols=127  Identities=13%  Similarity=0.073  Sum_probs=83.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      ..++|||||=+....+.   ..+-..|+.||+++.               .-.+.+.|..+.+.+....++||+|++.- 
T Consensus        52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV  113 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLV  113 (219)
T ss_pred             cceEEeecccCCCCccc---ccCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence            46999999986654333   234568999999651               22345677777654333357899999862 


Q ss_pred             ---cc---cHHHHHHHHccccccCeE-----EEEEEcCC-----cHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEE
Q 022962          201 ---VA---EMRILAEYCLPLVRVGGL-----FVAAKGHD-----PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTA  264 (289)
Q Consensus       201 ---~~---~~~~ll~~~~~~LkpgG~-----l~~~~g~~-----~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~l  264 (289)
                         +.   ..-++++.+.++|+|+|.     |+++.+..     .--....+...+...||..++..      ....-++
T Consensus       114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~------~~~Kl~y  187 (219)
T PF11968_consen  114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK------KSKKLAY  187 (219)
T ss_pred             EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE------ecCeEEE
Confidence               22   346899999999999999     88776421     11112344556778999876553      2234457


Q ss_pred             EEEEecCC
Q 022962          265 VVCLKSRR  272 (289)
Q Consensus       265 v~~~k~~~  272 (289)
                      .++++...
T Consensus       188 ~l~r~~~~  195 (219)
T PF11968_consen  188 WLFRKSGK  195 (219)
T ss_pred             EEEeecCC
Confidence            77777644

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.77  E-value=0.00036  Score=64.31  Aligned_cols=104  Identities=14%  Similarity=0.034  Sum_probs=71.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC----CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEE--EeccccccCC---CCcCCC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC----PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQI--VRGRAETLGK---DVSFRE  191 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~----p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~--~~~d~~~~~~---~~~~~~  191 (289)
                      ++..++|+|||+|.=...|....    .....++||+|.++++.+..+...-...++++  +++|..+...   ......
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~  155 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS  155 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence            36689999999998655444332    24689999999999999988877334445544  7888866311   101123


Q ss_pred             CceEEEEcC-------cccHHHHHHHHcc-ccccCeEEEEE
Q 022962          192 QYDVAVARA-------VAEMRILAEYCLP-LVRVGGLFVAA  224 (289)
Q Consensus       192 ~fD~V~sn~-------~~~~~~ll~~~~~-~LkpgG~l~~~  224 (289)
                      ...+++.-+       ......+++.+.+ .|+|||.|++-
T Consensus       156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence            467777642       2245688899999 99999999874

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.73  E-value=3.3e-05  Score=73.96  Aligned_cols=92  Identities=17%  Similarity=0.189  Sum_probs=55.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEE---eCChHHHHHHHHHHHHcCCCCEEEEecc--ccccCCCCcCCCCceEEE
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDWKVTLL---ESMNKRCVFLEHAVSLTQLLNVQIVRGR--AETLGKDVSFREQYDVAV  197 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~i---D~s~~~l~~a~~~~~~~~l~ni~~~~~d--~~~~~~~~~~~~~fD~V~  197 (289)
                      ..+||+|||+|.+|-.|...  +..+..+   |..+..+.+|-+    -|+.-   +.+-  -..++.+   ++.||+|.
T Consensus       119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale----RGvpa---~~~~~~s~rLPfp---~~~fDmvH  186 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE----RGVPA---MIGVLGSQRLPFP---SNAFDMVH  186 (506)
T ss_pred             EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh----cCcch---hhhhhccccccCC---ccchhhhh
Confidence            47899999999998887644  3333232   333334444433    24321   1111  1234443   58999999


Q ss_pred             EcCc-----ccHHHHHHHHccccccCeEEEEEEc
Q 022962          198 ARAV-----AEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       198 sn~~-----~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      |...     .+-..++-++-|+|+|||+|+....
T Consensus       187 csrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  187 CSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             cccccccchhcccceeehhhhhhccCceEEecCC
Confidence            8631     1113477899999999999987543

; GO: 0008168 methyltransferase activity

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=97.72  E-value=0.00034  Score=62.34  Aligned_cols=128  Identities=12%  Similarity=0.230  Sum_probs=98.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      |..|+=+| -.-..|+++|...-..+|.-||+++..+.+..+.++++|++|++.+.-|+.+.-++ .+.++||+.+..+.
T Consensus       153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe-~~~~kFDvfiTDPp  230 (354)
T COG1568         153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPE-DLKRKFDVFITDPP  230 (354)
T ss_pred             CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChH-HHHhhCCeeecCch
Confidence            77899999 56666777776544468999999999999999999999999999988888774322 35679999999864


Q ss_pred             c---cHHHHHHHHccccccC---eEEEEEEcCCcHHHHHHHHH-HHHHhCCeEeEEe
Q 022962          202 A---EMRILAEYCLPLVRVG---GLFVAAKGHDPQEEVKNSER-AVQLMGASLLQLC  251 (289)
Q Consensus       202 ~---~~~~ll~~~~~~Lkpg---G~l~~~~g~~~~~ei~~~~~-~l~~~g~~~~~~~  251 (289)
                      .   .++.++..-...||--   |+|.+........+-.++++ ++..+|+-+.++.
T Consensus       231 eTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITdii  287 (354)
T COG1568         231 ETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITDII  287 (354)
T ss_pred             hhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHhhh
Confidence            4   5667777666677765   88887766666666666666 6678898777654

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.58  E-value=0.00015  Score=64.84  Aligned_cols=92  Identities=21%  Similarity=0.086  Sum_probs=69.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      .+..++|+|||.|-...    ..|.+.++|.|++...+.-++.    .|.  ..+..+|+..++..   +.+||.+++-+
T Consensus        45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~----~~~--~~~~~ad~l~~p~~---~~s~d~~lsia  111 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKR----SGG--DNVCRADALKLPFR---EESFDAALSIA  111 (293)
T ss_pred             CcceeeecccCCcccCc----CCCcceeeecchhhhhcccccc----CCC--ceeehhhhhcCCCC---CCccccchhhh
Confidence            47889999999996432    2478899999999887766654    121  25677888888765   37899999876


Q ss_pred             cc-------cHHHHHHHHccccccCeEEEEEE
Q 022962          201 VA-------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ~~-------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +.       ....+++++.+.|+|||...++.
T Consensus       112 vihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv  143 (293)
T KOG1331|consen  112 VIHHLSTRERRERALEELLRVLRPGGNALVYV  143 (293)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            43       35789999999999999977654

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.55  E-value=0.0013  Score=60.92  Aligned_cols=108  Identities=18%  Similarity=0.124  Sum_probs=79.7

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCC----CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC------
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACP----DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV------  187 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p----~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~------  187 (289)
                      .++++.+|||+|+-.|.=++.|....-    .+.|++-|.+...+..+.+........++.+...|+...+...      
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence            567899999999999998877655432    2489999999999999999887776667777777766554321      


Q ss_pred             cCCCCceEEEEcC--------------------------ccc-HHHHHHHHccccccCeEEEEEE
Q 022962          188 SFREQYDVAVARA--------------------------VAE-MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       188 ~~~~~fD~V~sn~--------------------------~~~-~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .....||-|++..                          ... --.++....++||+||+++...
T Consensus       232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST  296 (375)
T KOG2198|consen  232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST  296 (375)
T ss_pred             hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence            0124799999862                          001 1367888999999999998643

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.48  E-value=0.0004  Score=61.32  Aligned_cols=74  Identities=14%  Similarity=0.085  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ...+|+|||||-=-+++......++..++|+|++..++++.+.....++. +.++...|+..-..    ....|+.+.-
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~----~~~~DlaLll  178 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPP----KEPADLALLL  178 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHT----TSEESEEEEE
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCC----CCCcchhhHH
Confidence            36799999999998888766566778999999999999999999999987 57777777765432    3678999876

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.46  E-value=0.00032  Score=66.11  Aligned_cols=61  Identities=18%  Similarity=0.278  Sum_probs=52.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccC
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLG  184 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~  184 (289)
                      ..|||||+|||.++++.+++. +-.|||+|.-.-|.+.|++...++|.+ +|.++...-.++.
T Consensus        68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~  129 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK  129 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence            479999999999999888764 568999999999999999999999975 6988877666553

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.41  E-value=0.00024  Score=64.97  Aligned_cols=78  Identities=10%  Similarity=-0.001  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc---CCCCceEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS---FREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~---~~~~fD~V~  197 (289)
                      ++..++|.=-|.|.-+..+....|.++|+|+|.++.+++.+++..... -+++.+++++..++.....   .-.++|.|+
T Consensus        20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL   98 (310)
T PF01795_consen   20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINKVDGIL   98 (310)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-EEEEE
T ss_pred             CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCccCEEE
Confidence            477999999999999999998888899999999999999998765544 2479999998887632110   124788888


Q ss_pred             Ec
Q 022962          198 AR  199 (289)
Q Consensus       198 sn  199 (289)
                      ..
T Consensus        99 ~D  100 (310)
T PF01795_consen   99 FD  100 (310)
T ss_dssp             EE
T ss_pred             Ec
Confidence            75

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.38  E-value=0.003  Score=57.38  Aligned_cols=183  Identities=14%  Similarity=0.179  Sum_probs=100.7

Q ss_pred             CCCCHHHHHHHHHHHHHHH-HhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChH
Q 022962           57 ETLNTRQQEQIHLYVDALL-QWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLP  135 (289)
Q Consensus        57 ~~~~~~~~~~l~~~~~~l~-~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~  135 (289)
                      ..++.....+....+..+. +|...    +..+.+..+ +.+++.+..+-|-..        .-....+||-=|||.|.+
T Consensus        98 ~~~n~~~m~kv~s~l~~i~RdwssE----~~~ERd~~y-kpii~~l~~lfp~~~--------~~r~ki~iLvPGaGlGRL  164 (369)
T KOG2798|consen   98 AQVNPDFMSKVSSTLKQICRDWSSE----GQRERDQLY-KPIIEELNSLFPSRG--------KERTKIRILVPGAGLGRL  164 (369)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHhhhc----cchhhhhhh-hhHHHHHHhhCCCcc--------ccccCceEEecCCCchhH
Confidence            3455566666655555555 45443    233333333 244444433322111        112356899999999999


Q ss_pred             HHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EE---------------------------------------E
Q 022962          136 GLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQ---------------------------------------I  175 (289)
Q Consensus       136 ~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~---------------------------------------~  175 (289)
                      +..||...+  ++-|-|.|--|+-...-....-..+| +.                                       +
T Consensus       165 a~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsi  242 (369)
T KOG2798|consen  165 AYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSI  242 (369)
T ss_pred             HHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccc
Confidence            999998744  55566888777654433322111111 11                                       1


Q ss_pred             EeccccccCCCCcCCCCceEEEEcC----cccHHHHHHHHccccccCeEEEE-----EE-----cC----CcHHHHHHHH
Q 022962          176 VRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGGLFVA-----AK-----GH----DPQEEVKNSE  237 (289)
Q Consensus       176 ~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~~~ll~~~~~~LkpgG~l~~-----~~-----g~----~~~~ei~~~~  237 (289)
                      -.||..+.-......+.||+|+.+-    -.++-+.++.+...|||||.++=     ++     |.    ...-..+++.
T Consensus       243 caGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~  322 (369)
T KOG2798|consen  243 CAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLK  322 (369)
T ss_pred             cccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHH
Confidence            1122222211111124699998763    23677888899999999999872     11     10    0111234566


Q ss_pred             HHHHHhCCeEeEEeeee
Q 022962          238 RAVQLMGASLLQLCSVE  254 (289)
Q Consensus       238 ~~l~~~g~~~~~~~~~~  254 (289)
                      ...+..||++.+...++
T Consensus       323 ~v~~~~GF~~~ke~~Id  339 (369)
T KOG2798|consen  323 RVASHRGFEVEKERGID  339 (369)
T ss_pred             HHHHhcCcEEEEeeeee
Confidence            66778999988776554

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.29  E-value=0.00012  Score=62.62  Aligned_cols=117  Identities=21%  Similarity=0.147  Sum_probs=80.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      .+.++||+|+|.|-++..++-.+  .+|+|.|.|..|...++..    +. ||  + +.++-...    +-+||+|.|-.
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk----~y-nV--l-~~~ew~~t----~~k~dli~clN  177 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK----NY-NV--L-TEIEWLQT----DVKLDLILCLN  177 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc----CC-ce--e-eehhhhhc----CceeehHHHHH
Confidence            36799999999999988887543  3699999999998776652    22 22  1 11111111    24699999864


Q ss_pred             cc----cHHHHHHHHcccccc-CeEEEEEE--------------------------cCCcHHHHHHHHHHHHHhCCeEeE
Q 022962          201 VA----EMRILAEYCLPLVRV-GGLFVAAK--------------------------GHDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       201 ~~----~~~~ll~~~~~~Lkp-gG~l~~~~--------------------------g~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                      +-    +.-.+++.+..+|.| +|+.++..                          |....+++..+++.++..|+.+..
T Consensus       178 lLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~vea  257 (288)
T KOG3987|consen  178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEA  257 (288)
T ss_pred             HHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhh
Confidence            32    456899999999999 88877421                          223456677788889999997654


Q ss_pred             Ee
Q 022962          250 LC  251 (289)
Q Consensus       250 ~~  251 (289)
                      -.
T Consensus       258 wT  259 (288)
T KOG3987|consen  258 WT  259 (288)
T ss_pred             hh
Confidence            43

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.26  E-value=0.0048  Score=52.49  Aligned_cols=129  Identities=16%  Similarity=0.195  Sum_probs=79.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHH------HHHHHHHHcCCCCEEEEeccccccCCCCcCCC
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCV------FLEHAVSLTQLLNVQIVRGRAETLGKDVSFRE  191 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~------~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~  191 (289)
                      ++++.+|+|+=-|.|.++..++... |.+.|++.=..+...-      ..+...++-...|++.+-.++..+...    +
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~p----q  121 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAP----Q  121 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCC----C
Confidence            4568999999999999999998764 6778998876653111      111122223344666665555555422    3


Q ss_pred             CceEEEEc-----------CcccHHHHHHHHccccccCeEEEEEE-----cCCcHHHH-------HHHHHHHHHhCCeEe
Q 022962          192 QYDVAVAR-----------AVAEMRILAEYCLPLVRVGGLFVAAK-----GHDPQEEV-------KNSERAVQLMGASLL  248 (289)
Q Consensus       192 ~fD~V~sn-----------~~~~~~~ll~~~~~~LkpgG~l~~~~-----g~~~~~ei-------~~~~~~l~~~g~~~~  248 (289)
                      ..|++..+           .-.....+..++++.|||||.+.++.     |....+..       ....+.-+..||.+.
T Consensus       122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~  201 (238)
T COG4798         122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLE  201 (238)
T ss_pred             cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceee
Confidence            45555543           12345788889999999999999874     11111111       123344567899876


Q ss_pred             EEe
Q 022962          249 QLC  251 (289)
Q Consensus       249 ~~~  251 (289)
                      ...
T Consensus       202 aeS  204 (238)
T COG4798         202 AES  204 (238)
T ss_pred             eee
Confidence            543

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.26  E-value=0.0039  Score=56.45  Aligned_cols=78  Identities=14%  Similarity=0.090  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC--cCCCCceEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV--SFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~--~~~~~fD~V~  197 (289)
                      +++..+|.=-|.|.-+-.+...+|. ++++|+|.++.+++.|++....++ +++++++++..++....  ..-+++|.|+
T Consensus        23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i~~vDGiL  101 (314)
T COG0275          23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGIGKVDGIL  101 (314)
T ss_pred             CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcCCCceeEEE
Confidence            3679999999999999998888764 679999999999999999888776 47999999877653211  0124677776


Q ss_pred             Ec
Q 022962          198 AR  199 (289)
Q Consensus       198 sn  199 (289)
                      ..
T Consensus       102 ~D  103 (314)
T COG0275         102 LD  103 (314)
T ss_pred             Ee
Confidence            64

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.23  E-value=0.01  Score=53.59  Aligned_cols=116  Identities=16%  Similarity=0.129  Sum_probs=73.8

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC---
Q 022962          124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA---  200 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~---  200 (289)
                      +++|+.||.|.+++.+... ....|.++|+++.+++..+.|...     . ++++|+.++.... ....+|+++...   
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~~~~~-~~~~~D~l~~gpPCq   73 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN-----K-LIEGDITKIDEKD-FIPDIDLLTGGFPCQ   73 (275)
T ss_pred             cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC-----C-CccCccccCchhh-cCCCCCEEEeCCCCh
Confidence            6899999999988777654 234578999999999888876532     1 5677888775421 125699999862   


Q ss_pred             ----------ccc-----HHHHHHHHccccccCeEEEEEE--c---CCcHHHHHHHHHHHHHhCCeEeE
Q 022962          201 ----------VAE-----MRILAEYCLPLVRVGGLFVAAK--G---HDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       201 ----------~~~-----~~~ll~~~~~~LkpgG~l~~~~--g---~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                                ..+     +..+++.+ +.++|. .++++-  |   .+..+.+..+.+.++..|+.+..
T Consensus        74 ~fS~ag~~~~~~d~r~~L~~~~~~~i-~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~  140 (275)
T cd00315          74 PFSIAGKRKGFEDTRGTLFFEIIRIL-KEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYW  140 (275)
T ss_pred             hhhHHhhcCCCCCchHHHHHHHHHHH-HhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEE
Confidence                      111     12333322 234565 444442  1   11234567777888899987643

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=97.16  E-value=0.0072  Score=53.03  Aligned_cols=145  Identities=19%  Similarity=0.128  Sum_probs=88.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ++++.+||=+|+++|.---..+.. -|+.-|+|||.|...=..+-..+++  -+||-.+..|+.......-.-...|+|+
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--RtNiiPIiEDArhP~KYRmlVgmVDvIF  231 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--RTNIIPIIEDARHPAKYRMLVGMVDVIF  231 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--cCCceeeeccCCCchheeeeeeeEEEEe
Confidence            457999999999999854444433 3788999999998654333333332  2478777777765322111124689998


Q ss_pred             Ec-Cccc-HHHHHHHHccccccCeEEEEEEcCC------cHHH-HHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEE
Q 022962          198 AR-AVAE-MRILAEYCLPLVRVGGLFVAAKGHD------PQEE-VKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCL  268 (289)
Q Consensus       198 sn-~~~~-~~~ll~~~~~~LkpgG~l~~~~g~~------~~~e-i~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~  268 (289)
                      +. +..+ .+.+.-.+..+||+||.|++..-.+      ..+. +..-.+.|++..++..+..-+   .|+...+.+++.
T Consensus       232 aDvaqpdq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~EqvtL---EP~erdha~VvG  308 (317)
T KOG1596|consen  232 ADVAQPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKEQVTL---EPFERDHACVVG  308 (317)
T ss_pred             ccCCCchhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchheecc---ccccCCceEEEE
Confidence            87 3333 3455557788999999999764211      1121 222234466677777776544   244444444443

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.12  E-value=0.0022  Score=59.14  Aligned_cols=93  Identities=16%  Similarity=0.089  Sum_probs=69.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      -...+|+|.|.|..+-.+...+|.  |-+++.+...+..+..... .   .|+.+.+|..+- .     -+-|+|++.- 
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~-~-----P~~daI~mkWi  245 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD-T-----PKGDAIWMKWI  245 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-C---Ccceeccccccc-C-----CCcCeEEEEee
Confidence            478999999999999888878775  7777877766655555443 3   477777777653 1     1347888762 


Q ss_pred             -----cccHHHHHHHHccccccCeEEEEEEc
Q 022962          201 -----VAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       201 -----~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                           -.+...+++.|+..|+|||.+++...
T Consensus       246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             cccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence                 34678999999999999999997653

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.10  E-value=0.0027  Score=58.73  Aligned_cols=94  Identities=17%  Similarity=0.187  Sum_probs=65.2

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc-ccccCCCCcCCCCceE
Q 022962          118 SCNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-AETLGKDVSFREQYDV  195 (289)
Q Consensus       118 ~~~~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d-~~~~~~~~~~~~~fD~  195 (289)
                      +.+++.+|+=+|+| -|..++.+|+... ++|+++|.|++..+.|++    +|.+  .++.+. ......   ..+.||+
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~----lGAd--~~i~~~~~~~~~~---~~~~~d~  232 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKK----LGAD--HVINSSDSDALEA---VKEIADA  232 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHH----hCCc--EEEEcCCchhhHH---hHhhCcE
Confidence            46678999999888 3446666777654 999999999999887766    4543  233322 222221   1235999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+....   ...+....+.|++||++++.
T Consensus       233 ii~tv~---~~~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         233 IIDTVG---PATLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             EEECCC---hhhHHHHHHHHhcCCEEEEE
Confidence            998765   45666777899999999864

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=97.08  E-value=0.014  Score=51.82  Aligned_cols=102  Identities=17%  Similarity=0.120  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-----CC-CEEEEeccccccCCCCcCCCC-ce
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----LL-NVQIVRGRAETLGKDVSFREQ-YD  194 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-----l~-ni~~~~~d~~~~~~~~~~~~~-fD  194 (289)
                      ..+||++|+|+|..|+..|.. ..++|+.-|.-. .+...+.+...++     .. .+.+..-++.+.......... ||
T Consensus        87 ~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALL-LGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHH-hcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            567999999999999888865 467999988744 4444444433322     11 344444444443221111234 89


Q ss_pred             EEEEcC----cccHHHHHHHHccccccCeEEEEEE
Q 022962          195 VAVARA----VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       195 ~V~sn~----~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +|++..    ....+.++..+..+|..+|.+++..
T Consensus       165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~  199 (248)
T KOG2793|consen  165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY  199 (248)
T ss_pred             EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence            999873    2345677777777888888655544

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.05  E-value=0.00033  Score=66.91  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=89.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCC-cCCCCceEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDV-SFREQYDVA  196 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~-~~~~~fD~V  196 (289)
                      .++.+|||.=|+||.=++..|+..|+ .+|++-|.++.+++..++|++.++.++ ++..++|+..+-... .....||+|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI  187 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI  187 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence            35779999999999999999999887 589999999999999999999998765 778888887642210 113679999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      =.........+|..+.+.++.||.+++-
T Consensus       188 DLDPyGs~s~FLDsAvqav~~gGLL~vT  215 (525)
T KOG1253|consen  188 DLDPYGSPSPFLDSAVQAVRDGGLLCVT  215 (525)
T ss_pred             ecCCCCCccHHHHHHHHHhhcCCEEEEE
Confidence            9998888899999999999999999864

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.99  E-value=0.0023  Score=61.52  Aligned_cols=130  Identities=17%  Similarity=0.248  Sum_probs=74.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCC--EEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cCCCCcCCCCceEEEEc
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDW--KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAVAR  199 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~--~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~~~~~~~~~fD~V~sn  199 (289)
                      ..|+|+.+|.|.++-+|.. .|-+  .|+-++ .+..+..    +-.-|+  |-+++ |+.+ ++   .++.+||+|.++
T Consensus       367 RNVMDMnAg~GGFAAAL~~-~~VWVMNVVP~~-~~ntL~v----IydRGL--IG~yh-DWCE~fs---TYPRTYDLlHA~  434 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALID-DPVWVMNVVPVS-GPNTLPV----IYDRGL--IGVYH-DWCEAFS---TYPRTYDLLHAD  434 (506)
T ss_pred             eeeeeecccccHHHHHhcc-CCceEEEecccC-CCCcchh----hhhccc--chhcc-chhhccC---CCCcchhheehh
Confidence            4799999999998777753 2322  222221 1111111    111232  22222 4433 22   467899999998


Q ss_pred             Cc-------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962          200 AV-------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       200 ~~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      .+       .++..++-++-|+|+|||.+++-...+...+   +.+.++...++.. +... ...+.+...+++++|
T Consensus       435 ~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~---v~~i~~~lrW~~~-~~d~-e~g~~~~EkiL~~~K  506 (506)
T PF03141_consen  435 GLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEK---VKKIAKSLRWEVR-IHDT-EDGPDGPEKILICQK  506 (506)
T ss_pred             hhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHH---HHHHHHhCcceEE-EEec-CCCCCCCceEEEEEC
Confidence            42       3678999999999999999998544434444   4445556666543 2211 123344555666554

; GO: 0008168 methyltransferase activity

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.99  E-value=0.019  Score=56.20  Aligned_cols=105  Identities=14%  Similarity=0.065  Sum_probs=75.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC----CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCC--cCCCCc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP----DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV--SFREQY  193 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p----~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~--~~~~~f  193 (289)
                      +..+|.|-.||||..-+..+....    ...++|.|+++.....|+.|.--.|++ ++...++|-..-+...  ...+.|
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~  265 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKF  265 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccce
Confidence            456999999999987766655432    377999999999999999998888876 3555555544432211  123679


Q ss_pred             eEEEEcC---------c--------------------ccHHHHHHHHccccccCeEEEEEE
Q 022962          194 DVAVARA---------V--------------------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       194 D~V~sn~---------~--------------------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      |+|++|.         .                    .....+++.+...|+|||+..++.
T Consensus       266 D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl  326 (489)
T COG0286         266 DFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL  326 (489)
T ss_pred             eEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence            9999992         0                    012678889999999988666554

>PHA01634 hypothetical protein

Probab=96.98  E-value=0.0044  Score=49.15  Aligned_cols=71  Identities=17%  Similarity=0.170  Sum_probs=53.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +.+|+|||.+.|..++.++.. .+.+|+++|++++.....+++++.+.+-+=-+...++..   .   -++||+.+..
T Consensus        29 ~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~---~---Y~~~Di~~iD   99 (156)
T PHA01634         29 QRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNG---E---YEDVDIFVMD   99 (156)
T ss_pred             CCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccc---c---CCCcceEEEE
Confidence            789999999999999998865 567999999999999999998887644211122223322   1   2679988876

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.79  E-value=0.011  Score=59.97  Aligned_cols=135  Identities=17%  Similarity=0.112  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-------C-----CCEEEEEeCCh---HHHHHH-----------HHHHHH-----cCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC-------P-----DWKVTLLESMN---KRCVFL-----------EHAVSL-----TQL  170 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~-------p-----~~~V~~iD~s~---~~l~~a-----------~~~~~~-----~~l  170 (289)
                      .-+|+|+|-|+|...+...+..       |     ..+++++|..+   +.+..+           ++..+.     .|+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            3689999999999877766433       3     35899999754   222221           111111     122


Q ss_pred             -------C--CEEEEeccccccCCCCcCCCCceEEEEcCccc-------HHHHHHHHccccccCeEEEEEEcCCcHHHHH
Q 022962          171 -------L--NVQIVRGRAETLGKDVSFREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVK  234 (289)
Q Consensus       171 -------~--ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~-------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~  234 (289)
                             .  +++++.+|+.+.-..  ....||+++..++++       -.++++.+.++++|||+|.-+..   .   .
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~--~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~---a---~  209 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQ--LDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS---A---G  209 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHh--ccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh---H---H
Confidence                   1  255677888764332  225699999987553       27899999999999999986542   2   2


Q ss_pred             HHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962          235 NSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       235 ~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      .+.+.|..+||++...     +...+.|...+...
T Consensus       210 ~vr~~l~~~GF~v~~~-----~~~g~kr~~~~~~~  239 (662)
T PRK01747        210 FVRRGLQEAGFTVRKV-----KGFGRKREMLVGEL  239 (662)
T ss_pred             HHHHHHHHcCCeeeec-----CCCchhhhhhhehh
Confidence            3445777999987644     33445555555444

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.79  E-value=0.029  Score=50.23  Aligned_cols=122  Identities=11%  Similarity=0.082  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCCh--HHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---------CCcCC
Q 022962          123 LKLVDVGTGAGL--PGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---------DVSFR  190 (289)
Q Consensus       123 ~~VLDiGcG~G~--~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---------~~~~~  190 (289)
                      ...||||||-=.  ..=.+|+. .|+++|+=||.++-.++.++.......-....++++|+.+...         ..+++
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~  149 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD  149 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence            479999999432  22334543 6999999999999999988887665542238999999987421         11233


Q ss_pred             CCceEEEEcC------cccHHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhC
Q 022962          191 EQYDVAVARA------VAEMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMG  244 (289)
Q Consensus       191 ~~fD~V~sn~------~~~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g  244 (289)
                      ++.=+++..-      -.+...++......|.||.+|++.+..  ...+....+...+...+
T Consensus       150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~  211 (267)
T PF04672_consen  150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAG  211 (267)
T ss_dssp             S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred             CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence            4554544431      246889999999999999999987742  22333344444444443

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.79  E-value=0.0037  Score=57.64  Aligned_cols=119  Identities=17%  Similarity=0.167  Sum_probs=70.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccc----cccCCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA----ETLGKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~----~~~~~~~~~~~~fD~V  196 (289)
                      .++|||+|.|.|.-..++-..+|. -.++.++.|+..-++....++....+....-.+|+    .+++.    ...|++|
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~----ad~ytl~  189 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA----ADLYTLA  189 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc----cceeehh
Confidence            568999999999865555555676 36788888876544444443333322222222222    22322    3568888


Q ss_pred             EEc-C------cccHHHHHHHHccccccCeEEEEEEcCC--cHHHHHHHHHHHHHhC
Q 022962          197 VAR-A------VAEMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKNSERAVQLMG  244 (289)
Q Consensus       197 ~sn-~------~~~~~~ll~~~~~~LkpgG~l~~~~g~~--~~~ei~~~~~~l~~~g  244 (289)
                      +.. .      -.++...++....++.|||.|+++....  .-+.|..+.+.+-..|
T Consensus       190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ll~~~  246 (484)
T COG5459         190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQILLAPG  246 (484)
T ss_pred             hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHHhcCC
Confidence            754 2      2245668888899999999999876432  2344444444443334

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.61  E-value=0.0036  Score=54.58  Aligned_cols=80  Identities=16%  Similarity=0.301  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc-CCCC-EEEEec-cccccCCC-CcCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-QLLN-VQIVRG-RAETLGKD-VSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-~l~n-i~~~~~-d~~~~~~~-~~~~~~fD~V  196 (289)
                      ++.++||||+|.-++=-.+-..-=+++.+|.|+|+..++.|+.++..+ ++++ |+.... |-..+-.. ....+.||++
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t  157 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT  157 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence            567999999999886433332222689999999999999999998887 6654 766543 33322111 1124789999


Q ss_pred             EEcC
Q 022962          197 VARA  200 (289)
Q Consensus       197 ~sn~  200 (289)
                      +||.
T Consensus       158 lCNP  161 (292)
T COG3129         158 LCNP  161 (292)
T ss_pred             ecCC
Confidence            9993

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=96.56  E-value=0.014  Score=48.69  Aligned_cols=127  Identities=18%  Similarity=0.126  Sum_probs=77.9

Q ss_pred             EcCCCChHHHHHHHHCC-CCEEEEE--eCChHHHHHH---HHHHHHcCCCCEEEEe-ccccccCCCCc-CCCCceEEEEc
Q 022962          128 VGTGAGLPGLVLAIACP-DWKVTLL--ESMNKRCVFL---EHAVSLTQLLNVQIVR-GRAETLGKDVS-FREQYDVAVAR  199 (289)
Q Consensus       128 iGcG~G~~~l~la~~~p-~~~V~~i--D~s~~~l~~a---~~~~~~~~l~ni~~~~-~d~~~~~~~~~-~~~~fD~V~sn  199 (289)
                      ||=|.=..++.||+.++ ...++|.  |..++..+..   ..+++.+.-.++++++ .|+..+..... ..+.||.|+.|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            45566666777777766 5566554  5444444333   3566666444565554 47777654321 24689999999


Q ss_pred             C--c---------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962          200 A--V---------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  254 (289)
Q Consensus       200 ~--~---------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~  254 (289)
                      -  .               .=+..+++.+.++|+++|.+.+..-..+.-..=.+.+..+..|+.+.+..+++
T Consensus        83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~  154 (166)
T PF10354_consen   83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVPFD  154 (166)
T ss_pred             CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEecCC
Confidence            1  0               12478889999999999999986533322111112234457899888876653

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.33  E-value=0.014  Score=54.98  Aligned_cols=101  Identities=14%  Similarity=0.079  Sum_probs=64.9

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc-ccc-cCCCCcCCCCceEE
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-AET-LGKDVSFREQYDVA  196 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d-~~~-~~~~~~~~~~fD~V  196 (289)
                      .++.+||.+|||+ |..++.+|+..+..+|+++|.++++.+.+++..   +...+.....+ ..+ +.. ......+|+|
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~-~~~~~~~D~v  258 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRE-LTGGRGPDVC  258 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHH-HcCCCCCCEE
Confidence            3578999999988 888888888876557999999999888777631   22112111111 111 100 0112368998


Q ss_pred             EEcCc-------------------ccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAV-------------------AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~-------------------~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +-..-                   .+....+.++.+.|+++|+++..
T Consensus       259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  305 (386)
T cd08283         259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII  305 (386)
T ss_pred             EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence            86421                   11245778888999999999875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.28  E-value=0.015  Score=50.14  Aligned_cols=102  Identities=12%  Similarity=0.067  Sum_probs=57.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHH---C-CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCC---cC--CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIA---C-PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDV---SF--RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~---~-p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~---~~--~~  191 (289)
                      +..|+++|.=.|.-++.+|..   . +.++|+|||++-......  ..+...+ ++|++++||..+...-.   ..  ..
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~  110 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRITFIQGDSIDPEIVDQVRELASPP  110 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence            679999999999988877643   3 678999999965432211  1222222 47999999887642110   01  12


Q ss_pred             CceEEEEcCc---ccHHHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV---AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~---~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ...+|+-.+-   +..-..++....++++|++++++.
T Consensus       111 ~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen  111 HPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred             CceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence            4567776553   566777777889999999999764

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.06  E-value=0.012  Score=50.90  Aligned_cols=103  Identities=15%  Similarity=0.054  Sum_probs=63.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCChHHHHHHHHHHHHc-------------------------------
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLT-------------------------------  168 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~--~~V~~iD~s~~~l~~a~~~~~~~-------------------------------  168 (289)
                      +.++.|=|||+|.+.-.+...++.  ..|+|-|+++++++.|++|..-+                               
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA  131 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA  131 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            568999999999998888877755  58999999999999999874321                               


Q ss_pred             -----------CCCCEEEEeccccccCCC--CcCCCCceEEEEc-------------CcccHHHHHHHHccccccCeEEE
Q 022962          169 -----------QLLNVQIVRGRAETLGKD--VSFREQYDVAVAR-------------AVAEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       169 -----------~l~ni~~~~~d~~~~~~~--~~~~~~fD~V~sn-------------~~~~~~~ll~~~~~~LkpgG~l~  222 (289)
                                 +.....+.+.|+.+....  .......|+|+..             +-.+...++..+..+| |++.++
T Consensus       132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vL-p~~sVV  210 (246)
T PF11599_consen  132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVL-PERSVV  210 (246)
T ss_dssp             HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS--TT-EE
T ss_pred             HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhC-CCCcEE
Confidence                       111245667777663210  0112346999986             1225789999999999 555544


Q ss_pred             EEE
Q 022962          223 AAK  225 (289)
Q Consensus       223 ~~~  225 (289)
                      ...
T Consensus       211 ~v~  213 (246)
T PF11599_consen  211 AVS  213 (246)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            444

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.05  E-value=0.0099  Score=55.56  Aligned_cols=96  Identities=22%  Similarity=0.161  Sum_probs=64.0

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-cc-cccCCCCcCCCCceEEE-
Q 022962          122 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RA-ETLGKDVSFREQYDVAV-  197 (289)
Q Consensus       122 ~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d~-~~~~~~~~~~~~fD~V~-  197 (289)
                      +.+|+=+|||+ |.+++.+|+..+..+|+++|.+++.++.|++..   +.+.+..... +. ..... ......+|+++ 
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~-~t~g~g~D~vie  244 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILE-LTGGRGADVVIE  244 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC---CCeEeecCccccHHHHHHH-HhCCCCCCEEEE
Confidence            44999999996 777777888888899999999999999887731   2111111111 11 10100 01123699998 


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +.+   ....+.++.+++++||.+.+.
T Consensus       245 ~~G---~~~~~~~ai~~~r~gG~v~~v  268 (350)
T COG1063         245 AVG---SPPALDQALEALRPGGTVVVV  268 (350)
T ss_pred             CCC---CHHHHHHHHHHhcCCCEEEEE
Confidence            444   345778888999999999875

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=96.05  E-value=0.0039  Score=55.94  Aligned_cols=100  Identities=16%  Similarity=0.238  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHH-------HHHHH--HcCCC-CEEEEeccccccCCCCcCC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFL-------EHAVS--LTQLL-NVQIVRGRAETLGKDVSFR  190 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a-------~~~~~--~~~l~-ni~~~~~d~~~~~~~~~~~  190 (289)
                      .+++|||+|||+|.+++...+. ....++..|.|.+.+..-       +..+.  ..... -..+.+....+....  +.
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~--~t  192 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFN--HT  192 (282)
T ss_pred             cCceeEecCCcccccchhhhhh-ccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhh--hc
Confidence            3789999999999999997765 347899999988776211       11111  00000 123333311122111  12


Q ss_pred             C--CceEEEEcC----cccHHHH-HHHHccccccCeEEEE
Q 022962          191 E--QYDVAVARA----VAEMRIL-AEYCLPLVRVGGLFVA  223 (289)
Q Consensus       191 ~--~fD~V~sn~----~~~~~~l-l~~~~~~LkpgG~l~~  223 (289)
                      +  .||+|.+..    ....+.+ ...-..+++++|.+++
T Consensus       193 ~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~  232 (282)
T KOG2920|consen  193 ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV  232 (282)
T ss_pred             cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence            3  799999873    3344444 5555678889999875

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.03  E-value=0.042  Score=52.83  Aligned_cols=97  Identities=14%  Similarity=0.201  Sum_probs=70.8

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC---
Q 022962          124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA---  200 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~---  200 (289)
                      +++-+|||.=-+...+-. ..-..|+-+|+|+-.++.....-. -.-.-+.+...|+..+..+   +++||+|+--+   
T Consensus        51 ~~l~lGCGNS~l~e~ly~-~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fe---dESFdiVIdkGtlD  125 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYK-NGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFE---DESFDIVIDKGTLD  125 (482)
T ss_pred             eeEeecCCCCHHHHHHHh-cCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCC---CcceeEEEecCccc
Confidence            899999999876665543 234689999999988877665321 1122488889999887765   37899998752   


Q ss_pred             -----------cccHHHHHHHHccccccCeEEEEEE
Q 022962          201 -----------VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 -----------~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                                 .......+.++.++|++||+++.+.
T Consensus       126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence                       1134577889999999999987543

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.84  E-value=0.038  Score=50.66  Aligned_cols=102  Identities=18%  Similarity=0.175  Sum_probs=68.2

Q ss_pred             CCCCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-c-ccccC---CCCcCC
Q 022962          117 SSCNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-R-AETLG---KDVSFR  190 (289)
Q Consensus       117 ~~~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d-~~~~~---~~~~~~  190 (289)
                      ..++.+.+||=+|+|+ |..++..|+.....+|+.+|+++..++.|++    +|.+.+..... + +.++.   ....-.
T Consensus       165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g~  240 (354)
T KOG0024|consen  165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALGK  240 (354)
T ss_pred             cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhccc
Confidence            3567799999999995 8888888999999999999999999998877    56543322211 1 12211   000011


Q ss_pred             CCceEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          191 EQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       191 ~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..+|+.+.-.-.  +..++.+...+++||.+++.
T Consensus       241 ~~~d~~~dCsG~--~~~~~aai~a~r~gGt~vlv  272 (354)
T KOG0024|consen  241 KQPDVTFDCSGA--EVTIRAAIKATRSGGTVVLV  272 (354)
T ss_pred             cCCCeEEEccCc--hHHHHHHHHHhccCCEEEEe
Confidence            458988855333  23445556789999996643

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.69  E-value=0.044  Score=44.72  Aligned_cols=98  Identities=18%  Similarity=0.051  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR-  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn-  199 (289)
                      .++.+|+|+|.|.+-+..|+. .-..-+|+|+++-.+.+++-.+-+.|.. ..+|...|+-....     +.|..|+.. 
T Consensus        73 ~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl-----~dy~~vviFg  146 (199)
T KOG4058|consen   73 KGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL-----RDYRNVVIFG  146 (199)
T ss_pred             CCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc-----cccceEEEee
Confidence            568999999999987776654 2467889999999999999988887774 58888888877654     335544444 


Q ss_pred             CcccHHHHHHHHccccccCeEEEEEE
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +-.-+..+-.+...-+..+-.++...
T Consensus       147 aes~m~dLe~KL~~E~p~nt~vvacR  172 (199)
T KOG4058|consen  147 AESVMPDLEDKLRTELPANTRVVACR  172 (199)
T ss_pred             hHHHHhhhHHHHHhhCcCCCeEEEEe
Confidence            33334445555555666777776544

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.58  E-value=0.023  Score=49.56  Aligned_cols=91  Identities=19%  Similarity=0.237  Sum_probs=64.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-C----C----CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC----Cc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC-P----D----WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD----VS  188 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~-p----~----~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~----~~  188 (289)
                      -.+++|+|+-.|.|+-.|++.. .    .    .+|++||+.+-+           .++.|.-+++||......    ..
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~h  110 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIEH  110 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHHH
Confidence            4689999999999999998753 1    1    139999986522           345688889999764211    01


Q ss_pred             C-CCCceEEEEcC------ccc---------HHHHHHHHccccccCeEEEE
Q 022962          189 F-REQYDVAVARA------VAE---------MRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       189 ~-~~~fD~V~sn~------~~~---------~~~ll~~~~~~LkpgG~l~~  223 (289)
                      | .++.|+|+|.+      +.+         +-..+.-...+|||||.|+.
T Consensus       111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa  161 (294)
T KOG1099|consen  111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA  161 (294)
T ss_pred             hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence            2 35899999984      222         23455667889999999983

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.54  E-value=0.19  Score=45.69  Aligned_cols=114  Identities=15%  Similarity=0.166  Sum_probs=73.0

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC---
Q 022962          124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA---  200 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~---  200 (289)
                      +++|+-||.|.+++.+.... ---|.++|+++.+++..+.|..       ....+|+.++... ..++.+|+++...   
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~-~l~~~~D~l~ggpPCQ   72 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPS-DLPKDVDLLIGGPPCQ   72 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHH-HHHHT-SEEEEE---T
T ss_pred             cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-------ccccccccccccc-cccccceEEEeccCCc
Confidence            68999999999888877652 2368899999999888888654       6778899887543 1222599999761   


Q ss_pred             ----------ccc-----HHHHHHHHccccccCeEEEEEE--c---CCcHHHHHHHHHHHHHhCCeEe
Q 022962          201 ----------VAE-----MRILAEYCLPLVRVGGLFVAAK--G---HDPQEEVKNSERAVQLMGASLL  248 (289)
Q Consensus       201 ----------~~~-----~~~ll~~~~~~LkpgG~l~~~~--g---~~~~~ei~~~~~~l~~~g~~~~  248 (289)
                                ..+     +..+++.+ ..++|.- ++++-  |   ......+..+.+.+++.|+.+.
T Consensus        73 ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk~-~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~  138 (335)
T PF00145_consen   73 GFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPKY-FLLENVPGLLSSKNGEVFKEILEELEELGYNVQ  138 (335)
T ss_dssp             TTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-SE-EEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEE
T ss_pred             eEeccccccccccccchhhHHHHHHH-hhccceE-EEecccceeeccccccccccccccccccceeeh
Confidence                      111     23333333 3466754 44453  2   1223556778888999998654

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=95.35  E-value=0.0096  Score=56.19  Aligned_cols=66  Identities=17%  Similarity=0.125  Sum_probs=57.2

Q ss_pred             CCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccC
Q 022962          117 SSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLG  184 (289)
Q Consensus       117 ~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~  184 (289)
                      ..+++|..|.|+.||.|-.++.++..  ++.|++-|.+++++++++.|+..+.++  +|++++.|+.++-
T Consensus       245 g~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  245 GLFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             hccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence            34677899999999999999998866  599999999999999999999888774  4888888887653

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.28  E-value=0.083  Score=46.52  Aligned_cols=74  Identities=24%  Similarity=0.287  Sum_probs=47.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHH---HcC-C-----CCEEEEeccccccCCCCcCCCCc
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS---LTQ-L-----LNVQIVRGRAETLGKDVSFREQY  193 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~---~~~-l-----~ni~~~~~d~~~~~~~~~~~~~f  193 (289)
                      .+|||.=+|-|.=++.+|..  +++|+++|.|+-.....+.-.+   ... .     .+|+++++|..++-.  ..+++|
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~--~~~~s~  152 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR--QPDNSF  152 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC--CHSS--
T ss_pred             CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh--hcCCCC
Confidence            48999999999999999965  6799999999988777765322   211 1     369999999988643  224789


Q ss_pred             eEEEEcC
Q 022962          194 DVAVARA  200 (289)
Q Consensus       194 D~V~sn~  200 (289)
                      |+|....
T Consensus       153 DVVY~DP  159 (234)
T PF04445_consen  153 DVVYFDP  159 (234)
T ss_dssp             SEEEE--
T ss_pred             CEEEECC
Confidence            9999985

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.08  E-value=0.11  Score=47.35  Aligned_cols=97  Identities=15%  Similarity=0.142  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-cccc-cCCCCcCCCCceE
Q 022962          119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAET-LGKDVSFREQYDV  195 (289)
Q Consensus       119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d~~~-~~~~~~~~~~fD~  195 (289)
                      +..+.+||..|+|. |..++.+|+.. +.+|++++.+++..+.+++    .|.+.+-.... +..+ +..  ...+.+|+
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~--~~~~~~D~  235 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAA--GLGGGFDV  235 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHH--hcCCCceE
Confidence            34577899988763 66667777765 5789999999988776644    45432211111 1100 000  11356999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+...-.  ...++.+.+.|+++|.++..
T Consensus       236 vid~~g~--~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         236 IFDFVGT--QPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             EEECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence            9865322  34677778999999999864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=95.06  E-value=0.025  Score=51.57  Aligned_cols=74  Identities=20%  Similarity=0.267  Sum_probs=52.0

Q ss_pred             EEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccc-cCCCC---cCCCCceEEEEc
Q 022962          126 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAET-LGKDV---SFREQYDVAVAR  199 (289)
Q Consensus       126 LDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~-~~~~~---~~~~~fD~V~sn  199 (289)
                      +|||+|+-++--.+....-++...|+|+++.....|..|+.+++++ .+.+++..... +-.+.   ..+..||+++||
T Consensus       107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN  185 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN  185 (419)
T ss_pred             eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence            7999998875433332234689999999999999999999999885 47777653322 11110   112469999999

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=95.02  E-value=0.35  Score=41.93  Aligned_cols=100  Identities=15%  Similarity=0.122  Sum_probs=68.9

Q ss_pred             CCeEEEEcCCCCh----HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccc-cccCCCCcCCCCceE
Q 022962          122 NLKLVDVGTGAGL----PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRA-ETLGKDVSFREQYDV  195 (289)
Q Consensus       122 ~~~VLDiGcG~G~----~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~-~~~~~~~~~~~~fD~  195 (289)
                      ...+++++|+.|.    +++..|....++++++|-.++..+...++.....++.+ ++|+.++. +++-..  + ...|+
T Consensus        42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~--~-~~iDF  118 (218)
T PF07279_consen   42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPG--L-KGIDF  118 (218)
T ss_pred             ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhh--c-cCCCE
Confidence            5689999777553    44444555668899999999998888888888888765 69988874 443321  2 46888


Q ss_pred             EEEcC-cccHH-HHHHHHccccccCeEEEEEEc
Q 022962          196 AVARA-VAEMR-ILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       196 V~sn~-~~~~~-~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      ++... ..+.. .+++.+.  +.|.|-+++.+.
T Consensus       119 ~vVDc~~~d~~~~vl~~~~--~~~~GaVVV~~N  149 (218)
T PF07279_consen  119 VVVDCKREDFAARVLRAAK--LSPRGAVVVCYN  149 (218)
T ss_pred             EEEeCCchhHHHHHHHHhc--cCCCceEEEEec
Confidence            88653 34454 7776544  556777666554

The function of this family is unknown.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.00  E-value=0.39  Score=44.25  Aligned_cols=114  Identities=15%  Similarity=0.122  Sum_probs=69.5

Q ss_pred             EEEEcCCCChHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC---
Q 022962          125 LVDVGTGAGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA---  200 (289)
Q Consensus       125 VLDiGcG~G~~~l~la~~~p~~~-V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~---  200 (289)
                      |+|+-||.|.+++-+.+.  +.+ +.++|+++.+++..+.|..     + .++++|+.++.... . ..+|+++...   
T Consensus         1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~-~-~~~dvl~gg~PCq   70 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD-I-PDFDILLGGFPCQ   70 (315)
T ss_pred             CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh-C-CCcCEEEecCCCc
Confidence            589999999988877654  455 5679999999888877642     2 34567888875321 1 3589998751   


Q ss_pred             ----------ccc-HHHHHHHHc---cccccCeEEEEEEcC-----CcHHHHHHHHHHHHHhCCeEeE
Q 022962          201 ----------VAE-MRILAEYCL---PLVRVGGLFVAAKGH-----DPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       201 ----------~~~-~~~ll~~~~---~~LkpgG~l~~~~g~-----~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                                ..+ ...++....   +.++|. .++++--.     .....+..+...++..|+.+..
T Consensus        71 ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~  137 (315)
T TIGR00675        71 PFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYY  137 (315)
T ss_pred             ccchhcccCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEE
Confidence                      112 112222222   335665 33443211     1124456677788899997643

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=94.97  E-value=0.011  Score=53.38  Aligned_cols=98  Identities=13%  Similarity=0.060  Sum_probs=67.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .+..|+|+=+|-|++++..........|+|+|.++..++.++.+++.++.. ...++.+|-....    ++...|-|.-.
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~----~~~~AdrVnLG  269 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK----PRLRADRVNLG  269 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC----ccccchheeec
Confidence            367899999999999996555556789999999999999999999988653 2444455544332    23566777665


Q ss_pred             Ccc----cHHHHHHHHccccccCeE-EEEEEc
Q 022962          200 AVA----EMRILAEYCLPLVRVGGL-FVAAKG  226 (289)
Q Consensus       200 ~~~----~~~~ll~~~~~~LkpgG~-l~~~~g  226 (289)
                      -++    .+....    ++|||.|- ++-.+.
T Consensus       270 LlPSse~~W~~A~----k~Lk~eggsilHIHe  297 (351)
T KOG1227|consen  270 LLPSSEQGWPTAI----KALKPEGGSILHIHE  297 (351)
T ss_pred             cccccccchHHHH----HHhhhcCCcEEEEec
Confidence            333    344443    46776554 665543

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=94.89  E-value=0.043  Score=50.63  Aligned_cols=105  Identities=10%  Similarity=-0.058  Sum_probs=77.4

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHH-------HHHHHHHHcCCC-C-EEEEeccccccCCCCc
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCV-------FLEHAVSLTQLL-N-VQIVRGRAETLGKDVS  188 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~-------~a~~~~~~~~l~-n-i~~~~~d~~~~~~~~~  188 (289)
                      ..++|.-|.|==.|||.+.+..|  +-++.|.|.||+-.++.       -.+.|.+..|.. . +.++.+|....+.-  
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa--~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r--  280 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAA--HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR--  280 (421)
T ss_pred             ccCCCCEEecCccccCceeeehh--hhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh--
Confidence            34678999999889997655544  34789999999988776       235577778853 2 67778887764432  


Q ss_pred             CCCCceEEEEcC-------------------------------------cccHHHHHHHHccccccCeEEEEEEc
Q 022962          189 FREQYDVAVARA-------------------------------------VAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       189 ~~~~fD~V~sn~-------------------------------------~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      ....||.|+|..                                     ..-+..++...++.|..||++++..+
T Consensus       281 sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p  355 (421)
T KOG2671|consen  281 SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP  355 (421)
T ss_pred             hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence            146899999981                                     01246788899999999999998765

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.82  E-value=0.15  Score=47.07  Aligned_cols=95  Identities=11%  Similarity=0.107  Sum_probs=56.2

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+||=.||| .|..++.+|+.....+|+++|.+++.++.+++    +|.+.+ ..-..++.+...   ..+.+|+|+-
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~---~~g~~D~vid  241 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKA---EKGYFDVSFE  241 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhc---cCCCCCEEEE
Confidence            37789888864 23333445655544479999999988777654    564321 111112222211   1235899885


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEE
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..-.  ...++.+.+.|++||+++..
T Consensus       242 ~~G~--~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        242 VSGH--PSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             CCCC--HHHHHHHHHHhhcCCEEEEE
Confidence            5322  23556667889999998865

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=94.68  E-value=0.67  Score=42.15  Aligned_cols=149  Identities=12%  Similarity=0.031  Sum_probs=93.1

Q ss_pred             CCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc----CCCCEEEEeccccccCCCCcCCCC
Q 022962          117 SSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT----QLLNVQIVRGRAETLGKDVSFREQ  192 (289)
Q Consensus       117 ~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~----~l~ni~~~~~d~~~~~~~~~~~~~  192 (289)
                      .+..+..+||=||-|.|......++.-.-..+..+|++...++..++.....    .-++|.++-+|-..+-.. ...++
T Consensus       117 ~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~-~~~~~  195 (337)
T KOG1562|consen  117 CSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED-LKENP  195 (337)
T ss_pred             ccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH-hccCC
Confidence            3455678999999999987666565422257999999999888887755443    224689998987765332 11478


Q ss_pred             ceEEEEcCc---c-----cHHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCce
Q 022962          193 YDVAVARAV---A-----EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQR  262 (289)
Q Consensus       193 fD~V~sn~~---~-----~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r  262 (289)
                      ||+|+...-   .     -.+.+.+.+.+.||+||+.+.....  -...-+++..+..... |.......-..|.-+..+
T Consensus       196 ~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~-f~~t~ya~ttvPTypsg~  274 (337)
T KOG1562|consen  196 FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVI-FDLTAYAITTVPTYPSGR  274 (337)
T ss_pred             ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHh-cCccceeeecCCCCccce
Confidence            999997631   1     2467788899999999998864321  1233344444433333 334444433344334444


Q ss_pred             EEEEE
Q 022962          263 TAVVC  267 (289)
Q Consensus       263 ~lv~~  267 (289)
                      ..+.+
T Consensus       275 igf~l  279 (337)
T KOG1562|consen  275 IGFML  279 (337)
T ss_pred             EEEEE
Confidence            43333

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=94.62  E-value=0.086  Score=41.85  Aligned_cols=85  Identities=15%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             CEEEEeccccccCCCCcCCCCceEEEEcCccc-------HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhC
Q 022962          172 NVQIVRGRAETLGKDVSFREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG  244 (289)
Q Consensus       172 ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~-------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g  244 (289)
                      ++++..+|+.+.-..  ....||+|+-.++++       -.++++.+.++++|||.+.-+...   ..   +.+.|..+|
T Consensus        32 ~L~L~~gDa~~~l~~--l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a---~~---Vr~~L~~aG  103 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQ--LDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA---GA---VRRALQQAG  103 (124)
T ss_dssp             EEEEEES-HHHHHHH--B-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B---HH---HHHHHHHCT
T ss_pred             EEEEEEcHHHHHHHh--CcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech---HH---HHHHHHHcC
Confidence            367788998764321  236899999986542       278999999999999998864432   22   445777999


Q ss_pred             CeEeEEeeeecCCCCCceEEEEEEe
Q 022962          245 ASLLQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       245 ~~~~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      |.+.+..     ...+.|.++...|
T Consensus       104 F~v~~~~-----g~g~Kr~~~~a~~  123 (124)
T PF05430_consen  104 FEVEKVP-----GFGRKREMLRAVK  123 (124)
T ss_dssp             EEEEEEE------STTSSEEEEEEC
T ss_pred             CEEEEcC-----CCCCcchheEEEc
Confidence            9876554     3456677766554

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.49  E-value=0.44  Score=44.17  Aligned_cols=116  Identities=16%  Similarity=0.155  Sum_probs=72.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCC-CceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFRE-QYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~-~fD~V~sn~  200 (289)
                      ..+++|+-||.|.+.+-+.... ---+.++|+++.+++..+.|...     ..++..|+.++.... ... .+|+++...
T Consensus         3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~-~~~~~~DvligGp   75 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEA-LRKSDVDVLIGGP   75 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhh-ccccCCCEEEeCC
Confidence            4589999999999887776552 23578999999998877775432     456677887765431 122 789999762


Q ss_pred             -------------ccc-----HHHHHHHHccccccCeEEEEEEcCC----cHHHHHHHHHHHHHhCCe
Q 022962          201 -------------VAE-----MRILAEYCLPLVRVGGLFVAAKGHD----PQEEVKNSERAVQLMGAS  246 (289)
Q Consensus       201 -------------~~~-----~~~ll~~~~~~LkpgG~l~~~~g~~----~~~ei~~~~~~l~~~g~~  246 (289)
                                   ..+     +-.++ .+...++| -.|+++--..    ....++.+.+.|++.|+.
T Consensus        76 PCQ~FS~aG~r~~~~D~R~~L~~~~~-r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~  141 (328)
T COG0270          76 PCQDFSIAGKRRGYDDPRGSLFLEFI-RLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG  141 (328)
T ss_pred             CCcchhhcCcccCCcCccceeeHHHH-HHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence                         111     11122 22234566 4444442111    123567778889999996

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=94.42  E-value=0.04  Score=43.20  Aligned_cols=86  Identities=19%  Similarity=0.186  Sum_probs=56.0

Q ss_pred             CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC---CCCcCCCCceEEEEcCcccHHHH
Q 022962          131 GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG---KDVSFREQYDVAVARAVAEMRIL  207 (289)
Q Consensus       131 G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~---~~~~~~~~fD~V~sn~~~~~~~l  207 (289)
                      |.|..++.+|+... .+|+++|.+++..+.+++    +|.+.+  +..+-.++.   ........+|+|+-..-.  ...
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~~~--~~~~~~~~~~~i~~~~~~~~~d~vid~~g~--~~~   71 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGADHV--IDYSDDDFVEQIRELTGGRGVDVVIDCVGS--GDT   71 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTESEE--EETTTSSHHHHHHHHTTTSSEEEEEESSSS--HHH
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccccc--ccccccccccccccccccccceEEEEecCc--HHH
Confidence            45788889998876 999999999998777655    554322  222111110   000112479999855321  457


Q ss_pred             HHHHccccccCeEEEEEE
Q 022962          208 AEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       208 l~~~~~~LkpgG~l~~~~  225 (289)
                      ++.+..+|+++|+++++-
T Consensus        72 ~~~~~~~l~~~G~~v~vg   89 (130)
T PF00107_consen   72 LQEAIKLLRPGGRIVVVG   89 (130)
T ss_dssp             HHHHHHHEEEEEEEEEES
T ss_pred             HHHHHHHhccCCEEEEEE
Confidence            777788999999998764

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.38  E-value=0.27  Score=45.45  Aligned_cols=89  Identities=11%  Similarity=0.123  Sum_probs=56.2

Q ss_pred             CCCCeEEEEcCCCChHHHH---HHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceE
Q 022962          120 NSNLKLVDVGTGAGLPGLV---LAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDV  195 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~---la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~  195 (289)
                      .++.+||=+|||  .+|+.   +|+. ....+|+++|.+++.++.+++    .+.  ....    .++..    ...+|+
T Consensus       162 ~~g~~VlV~G~G--~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~~~~----~~~~~----~~g~d~  225 (341)
T cd08237         162 KDRNVIGVWGDG--NLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--TYLI----DDIPE----DLAVDH  225 (341)
T ss_pred             CCCCEEEEECCC--HHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--eeeh----hhhhh----ccCCcE
Confidence            357899999874  45544   3443 456789999999988888764    222  1111    11111    124899


Q ss_pred             EEEcCcc-cHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVA-EMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~-~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-..-. .....+..+.++|++||+++++
T Consensus       226 viD~~G~~~~~~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         226 AFECVGGRGSQSAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             EEECCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence            8844321 1345677778899999998864

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK13699 putative methylase; Provisional

Probab=94.27  E-value=0.15  Score=44.84  Aligned_cols=76  Identities=12%  Similarity=0.093  Sum_probs=50.0

Q ss_pred             EEEeccccccCCCCcCCCCceEEEEcC---c----------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHH
Q 022962          174 QIVRGRAETLGKDVSFREQYDVAVARA---V----------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVK  234 (289)
Q Consensus       174 ~~~~~d~~~~~~~~~~~~~fD~V~sn~---~----------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~  234 (289)
                      +++++|..++-.. ..++++|+|++..   +                .-...++.+++++|||||.+++..+......+ 
T Consensus         3 ~l~~gD~le~l~~-lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~-   80 (227)
T PRK13699          3 RFILGNCIDVMAR-FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRF-   80 (227)
T ss_pred             eEEechHHHHHHh-CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHH-
Confidence            5667777654211 1247788888862   0                11357889999999999999876665444433 


Q ss_pred             HHHHHHHHhCCeEeEEeee
Q 022962          235 NSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       235 ~~~~~l~~~g~~~~~~~~~  253 (289)
                        ...+++.||.+......
T Consensus        81 --~~al~~~GF~l~~~IiW   97 (227)
T PRK13699         81 --MAAWKNAGFSVVGHLVF   97 (227)
T ss_pred             --HHHHHHCCCEEeeEEEE
Confidence              44567899988765533

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=94.14  E-value=0.14  Score=49.90  Aligned_cols=97  Identities=16%  Similarity=0.137  Sum_probs=72.3

Q ss_pred             CCeEEEEcCCCChHHHHH---HHHC-CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVL---AIAC-PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~l---a~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ...|+=+|.|-|-+.-..   |... ...++++||.++.++..++. .+..+- .+|+++.+|+.++..+   .++.|++
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap---~eq~DI~  443 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP---REQADII  443 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc---hhhccch
Confidence            457889999999876443   3322 35789999999999988877 232333 3599999999998753   3789999


Q ss_pred             EEcC---cc---cHHHHHHHHccccccCeEEE
Q 022962          197 VARA---VA---EMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       197 ~sn~---~~---~~~~ll~~~~~~LkpgG~l~  222 (289)
                      +|--   +.   --++-|..+.++|||+|..+
T Consensus       444 VSELLGSFGDNELSPECLDG~q~fLkpdgIsI  475 (649)
T KOG0822|consen  444 VSELLGSFGDNELSPECLDGAQKFLKPDGISI  475 (649)
T ss_pred             HHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence            9862   22   12678888999999999887

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.10  E-value=0.28  Score=48.21  Aligned_cols=99  Identities=14%  Similarity=0.172  Sum_probs=62.2

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc--------ccccCCC-----
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR--------AETLGKD-----  186 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d--------~~~~~~~-----  186 (289)
                      ++.+|+=+|||. |..++..|+... ++|+++|.+++.++.+++    +|.+.+.+-..+        +.+...+     
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aes----lGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~  238 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVES----MGAEFLELDFEEEGGSGDGYAKVMSEEFIKAE  238 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH----cCCeEEEeccccccccccchhhhcchhHHHHH
Confidence            488999999995 666677777765 589999999988776655    554322211101        0001000     


Q ss_pred             ----CcCCCCceEEEEcCcc-c--HHHH-HHHHccccccCeEEEEE
Q 022962          187 ----VSFREQYDVAVARAVA-E--MRIL-AEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       187 ----~~~~~~fD~V~sn~~~-~--~~~l-l~~~~~~LkpgG~l~~~  224 (289)
                          ...-..+|+|+..+.. .  -+.+ .+++.+.+||||.++..
T Consensus       239 ~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdv  284 (509)
T PRK09424        239 MALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDL  284 (509)
T ss_pred             HHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence                0001359999976532 1  2344 58999999999998854

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.09  E-value=0.25  Score=45.77  Aligned_cols=93  Identities=16%  Similarity=0.202  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeC---ChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLES---MNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~---s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ++.+||=+|+|+ |.+++.+|+.. +.+|++++.   +++..+.++    ++|.+.+.....+..+ .   .....||+|
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~----~~Ga~~v~~~~~~~~~-~---~~~~~~d~v  242 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVE----ELGATYVNSSKTPVAE-V---KLVGEFDLI  242 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHH----HcCCEEecCCccchhh-h---hhcCCCCEE
Confidence            478999998753 44445566665 458999997   566665554    4554322111111111 0   012468998


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +-..-.  ...+..+.+.|++||.+++.
T Consensus       243 id~~g~--~~~~~~~~~~l~~~G~~v~~  268 (355)
T cd08230         243 IEATGV--PPLAFEALPALAPNGVVILF  268 (355)
T ss_pred             EECcCC--HHHHHHHHHHccCCcEEEEE
Confidence            865432  23567777899999998764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=94.04  E-value=0.92  Score=40.45  Aligned_cols=105  Identities=19%  Similarity=0.192  Sum_probs=63.0

Q ss_pred             HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE-EcCcccHHHHHHHHcc
Q 022962          135 PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV-ARAVAEMRILAEYCLP  213 (289)
Q Consensus       135 ~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~-sn~~~~~~~ll~~~~~  213 (289)
                      +++.|.+..+..+|+|+|.++..++.|.+    .|.-.-  ...+.+.+       ..+|+|+ |-.+.....+++++..
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~~--~~~~~~~~-------~~~DlvvlavP~~~~~~~l~~~~~   67 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALE----LGIIDE--ASTDIEAV-------EDADLVVLAVPVSAIEDVLEEIAP   67 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSSSE--EESHHHHG-------GCCSEEEE-S-HHHHHHHHHHHHC
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCeee--ccCCHhHh-------cCCCEEEEcCCHHHHHHHHHHhhh
Confidence            35667777678999999999988766643    454221  11222222       3479988 5577888999999999


Q ss_pred             ccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962          214 LVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  254 (289)
Q Consensus       214 ~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~  254 (289)
                      .+++|+.+.=. +.-...-+..+.+.+. .+...+...++-
T Consensus        68 ~~~~~~iv~Dv-~SvK~~~~~~~~~~~~-~~~~~v~~HPM~  106 (258)
T PF02153_consen   68 YLKPGAIVTDV-GSVKAPIVEAMERLLP-EGVRFVGGHPMA  106 (258)
T ss_dssp             GS-TTSEEEE---S-CHHHHHHHHHHHT-SSGEEEEEEESC
T ss_pred             hcCCCcEEEEe-CCCCHHHHHHHHHhcC-cccceeecCCCC
Confidence            99998877643 3333333343333333 466777776653

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=93.91  E-value=0.045  Score=42.17  Aligned_cols=31  Identities=23%  Similarity=0.279  Sum_probs=24.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESM  154 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s  154 (289)
                      ....+|||||.|.+.-.|...  +..-.|+|.-
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R   89 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSE--GYPGWGIDAR   89 (112)
T ss_pred             CCceEEccCCchHHHHHHHhC--CCCccccccc
Confidence            457899999999987777654  5677899974

; GO: 0008168 methyltransferase activity

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.84  E-value=0.25  Score=45.89  Aligned_cols=99  Identities=9%  Similarity=0.007  Sum_probs=56.8

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccc-cCCCCcCCCCceE
Q 022962          119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAET-LGKDVSFREQYDV  195 (289)
Q Consensus       119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~-~~~~~~~~~~fD~  195 (289)
                      +.++.+||=.|||+ |..++.+|+.....+|+++|.+++..+.+++    +|.+.+ .....+..+ +... .....+|+
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~-~~~~g~d~  248 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRAL-TGGFGADV  248 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHH-hCCCCCCE
Confidence            44688999888642 3334456666543369999999988777754    554321 111111111 1000 01235899


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-..-.  ...+..+.+.+++||++++.
T Consensus       249 vid~~g~--~~~~~~~~~~~~~~G~iv~~  275 (358)
T TIGR03451       249 VIDAVGR--PETYKQAFYARDLAGTVVLV  275 (358)
T ss_pred             EEECCCC--HHHHHHHHHHhccCCEEEEE
Confidence            8854321  23455667789999998864

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=93.77  E-value=0.042  Score=42.46  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=28.0

Q ss_pred             CceEEEEcCc----------ccHHHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV----------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~----------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +||+|+|-++          +.+..+++.++..|+|||.|+++-
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp   44 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP   44 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence            4899999753          357899999999999999999874

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=93.60  E-value=0.15  Score=47.69  Aligned_cols=44  Identities=20%  Similarity=0.262  Sum_probs=36.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHH
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHA  164 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~  164 (289)
                      .+-..|+|+|.|-|.++-.++..+ +..|.|||-|....+.|+..
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHHH
Confidence            345689999999999999999776 68999999998777766653

>PRK11524 putative methyltransferase; Provisional

Probab=93.60  E-value=0.16  Score=46.12  Aligned_cols=75  Identities=13%  Similarity=0.033  Sum_probs=50.0

Q ss_pred             CEEEEeccccccCCCCcCCCCceEEEEcCc--------------------ccHHHHHHHHccccccCeEEEEEEcCCcHH
Q 022962          172 NVQIVRGRAETLGKDVSFREQYDVAVARAV--------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQE  231 (289)
Q Consensus       172 ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~--------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~  231 (289)
                      +.+++++|..++... ..+++||+|+++..                    ..+..++.++.++|||||.+++..+.....
T Consensus         8 ~~~i~~gD~~~~l~~-l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~~   86 (284)
T PRK11524          8 AKTIIHGDALTELKK-IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENMP   86 (284)
T ss_pred             CCEEEeccHHHHHHh-cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhhh
Confidence            467889998885321 12478999999831                    012578899999999999999876554433


Q ss_pred             HHHHHHHHHHHhCCeEeEEe
Q 022962          232 EVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       232 ei~~~~~~l~~~g~~~~~~~  251 (289)
                      .+    ..+...||......
T Consensus        87 ~~----~~~~~~~f~~~~~i  102 (284)
T PRK11524         87 FI----DLYCRKLFTIKSRI  102 (284)
T ss_pred             HH----HHHHhcCcceEEEE
Confidence            32    23345677666543

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=93.48  E-value=0.15  Score=43.55  Aligned_cols=42  Identities=14%  Similarity=0.153  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHH
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEH  163 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~  163 (289)
                      ++++.|||-=||||.-+++..+.  +-+.+|+|++++.++.|++
T Consensus       190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred             ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence            35889999999999876664433  6689999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=93.42  E-value=0.081  Score=50.95  Aligned_cols=105  Identities=15%  Similarity=0.109  Sum_probs=72.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc----cCCCCcCCCCceE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQYDV  195 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~----~~~~~~~~~~fD~  195 (289)
                      +.+..+|-+|=|+|.+...+...+|...+++|++++.+++.|+.+.....-.+..++..|-.+    ......-+..||+
T Consensus       294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv  373 (482)
T KOG2352|consen  294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV  373 (482)
T ss_pred             cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence            346789999999999998888888999999999999999999886543332222333233222    1111112357999


Q ss_pred             EEEc--C----------ccc-HHHHHHHHccccccCeEEEEE
Q 022962          196 AVAR--A----------VAE-MRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn--~----------~~~-~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ++..  +          .+. -..++..+...|.|.|.|++-
T Consensus       374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in  415 (482)
T KOG2352|consen  374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN  415 (482)
T ss_pred             EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence            9975  1          111 257778889999999999763

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=93.00  E-value=1.2  Score=39.68  Aligned_cols=128  Identities=16%  Similarity=0.186  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHH---C--CCCEEEEEeCCh--------------------------HHHHHHHHHHHHcCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIA---C--PDWKVTLLESMN--------------------------KRCVFLEHAVSLTQL  170 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~---~--p~~~V~~iD~s~--------------------------~~l~~a~~~~~~~~l  170 (289)
                      .+.|+++||=-|..++.++..   +  ++.+|++.|.=+                          ..++..+++....|+
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl  154 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL  154 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence            468999999999877665432   2  456799998421                          123344444444554


Q ss_pred             --CCEEEEeccccccCCCCcCCCCceEEEEc--CcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHH-HHHHHHHhCC
Q 022962          171 --LNVQIVRGRAETLGKDVSFREQYDVAVAR--AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKN-SERAVQLMGA  245 (289)
Q Consensus       171 --~ni~~~~~d~~~~~~~~~~~~~fD~V~sn--~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~-~~~~l~~~g~  245 (289)
                        ++++++.|...+.-.. ...+++-++...  -..+....|+.++..|.|||.+++ ..... +.... +.+...+.|.
T Consensus       155 ~~~~v~~vkG~F~dTLp~-~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~-DDY~~-~gcr~AvdeF~~~~gi  231 (248)
T PF05711_consen  155 LDDNVRFVKGWFPDTLPD-APIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIF-DDYGH-PGCRKAVDEFRAEHGI  231 (248)
T ss_dssp             SSTTEEEEES-HHHHCCC--TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEE-SSTTT-HHHHHHHHHHHHHTT-
T ss_pred             CcccEEEECCcchhhhcc-CCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEE-eCCCC-hHHHHHHHHHHHHcCC
Confidence              4799999998764322 112344444433  245678899999999999999886 33333 33332 3334456676


Q ss_pred             eEeEEeee
Q 022962          246 SLLQLCSV  253 (289)
Q Consensus       246 ~~~~~~~~  253 (289)
                      .. .+..+
T Consensus       232 ~~-~l~~i  238 (248)
T PF05711_consen  232 TD-PLHPI  238 (248)
T ss_dssp             -S---EE-
T ss_pred             CC-ccEEe
Confidence            42 34433

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PRK11524 putative methyltransferase; Provisional

Probab=92.91  E-value=0.25  Score=44.71  Aligned_cols=46  Identities=15%  Similarity=0.034  Sum_probs=37.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL  167 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~  167 (289)
                      .+|+.|||--||||.-+++..+.  +-+.+|+|++++.++.|++.++.
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence            45899999999999876654433  67999999999999999997653

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=92.53  E-value=1.2  Score=36.68  Aligned_cols=110  Identities=15%  Similarity=0.168  Sum_probs=67.8

Q ss_pred             EEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC--
Q 022962          125 LVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--  200 (289)
Q Consensus       125 VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--  200 (289)
                      |-=||+  |..|..+|+..  .+.+|++.|.+++.++.+.+.    +   ++. ..+..++.      +..|+|++.-  
T Consensus         4 Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g---~~~-~~s~~e~~------~~~dvvi~~v~~   67 (163)
T PF03446_consen    4 IGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----G---AEV-ADSPAEAA------EQADVVILCVPD   67 (163)
T ss_dssp             EEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----T---EEE-ESSHHHHH------HHBSEEEE-SSS
T ss_pred             EEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----h---hhh-hhhhhhHh------hcccceEeeccc
Confidence            444565  57777777653  468999999998776555441    2   433 33444432      3469998763  


Q ss_pred             cccHHHHHHH--HccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          201 VAEMRILAEY--CLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 ~~~~~~ll~~--~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      ....+.++..  +...|++|..++ ..+....++..++.+.+...|...++..
T Consensus        68 ~~~v~~v~~~~~i~~~l~~g~iii-d~sT~~p~~~~~~~~~~~~~g~~~vdap  119 (163)
T PF03446_consen   68 DDAVEAVLFGENILAGLRPGKIII-DMSTISPETSRELAERLAAKGVRYVDAP  119 (163)
T ss_dssp             HHHHHHHHHCTTHGGGS-TTEEEE-E-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred             chhhhhhhhhhHHhhccccceEEE-ecCCcchhhhhhhhhhhhhccceeeeee
Confidence            3456777777  777787776665 4555555666777788888998777664

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.46  E-value=1.2  Score=40.93  Aligned_cols=89  Identities=19%  Similarity=0.057  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +++.+||=.|+| .|..++.+|+.. +.+|+++|.+++..+.+++    +|.+.+  +.  ..+..     .+.+|+++-
T Consensus       164 ~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~----~Ga~~v--i~--~~~~~-----~~~~d~~i~  229 (329)
T TIGR02822       164 PPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALA----LGAASA--GG--AYDTP-----PEPLDAAIL  229 (329)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH----hCCcee--cc--ccccC-----cccceEEEE
Confidence            458899999974 222334456554 5689999999987665544    665422  11  11111     135787664


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEE
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ....  ...+..+.+.|++||++++.
T Consensus       230 ~~~~--~~~~~~~~~~l~~~G~~v~~  253 (329)
T TIGR02822       230 FAPA--GGLVPPALEALDRGGVLAVA  253 (329)
T ss_pred             CCCc--HHHHHHHHHhhCCCcEEEEE
Confidence            3211  24677778899999999764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.37  E-value=0.38  Score=41.85  Aligned_cols=97  Identities=20%  Similarity=0.227  Sum_probs=58.5

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceEE
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDVA  196 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~V  196 (289)
                      .++.+||..|+|+ |...+.+++.. +.+|++++.+++..+.++.    .+...+  +...-.+....  ....+.+|+|
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~~~~~~~~~~d~v  205 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE----LGADHV--IDYKEEDLEEELRLTGGGGADVV  205 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCcee--ccCCcCCHHHHHHHhcCCCCCEE
Confidence            3578999999986 44555566554 4899999999887766643    333221  11110000000  0012579999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +.+.-.  ...+..+.+.|+++|.++...
T Consensus       206 i~~~~~--~~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         206 IDAVGG--PETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             EECCCC--HHHHHHHHHhcccCCEEEEEc
Confidence            976432  134566677889999998654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=92.28  E-value=0.31  Score=43.28  Aligned_cols=46  Identities=15%  Similarity=0.128  Sum_probs=33.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC--------CCEEEEEeCChHHHHHHHHHHHH
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP--------DWKVTLLESMNKRCVFLEHAVSL  167 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p--------~~~V~~iD~s~~~l~~a~~~~~~  167 (289)
                      ..+|+++|.|+|.++..+.....        ..+++.||+|+.+.+.-++....
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            36899999999999988776432        36899999999887766665543

; PDB: 4F3N_A 1ZKD_B.

>PRK13699 putative methylase; Provisional

Probab=91.99  E-value=0.44  Score=41.80  Aligned_cols=48  Identities=13%  Similarity=0.089  Sum_probs=38.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ  169 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~  169 (289)
                      .+|+.|||-=||||.-++...+.  +.+.+|+|++++..+.+.+.++...
T Consensus       162 ~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~~  209 (227)
T PRK13699        162 HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAVQ  209 (227)
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHHH
Confidence            35889999999999876664433  6789999999999999988776643

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=91.68  E-value=0.4  Score=42.89  Aligned_cols=89  Identities=17%  Similarity=0.100  Sum_probs=64.8

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      .+.++....|+|+-.|.++-.|-+.  +..|++||--+ |    .++.-..  ..|+....|-..+.+.   ....|-.+
T Consensus       208 rL~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~-m----a~sL~dt--g~v~h~r~DGfk~~P~---r~~idWmV  275 (358)
T COG2933         208 RLAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGP-M----AQSLMDT--GQVTHLREDGFKFRPT---RSNIDWMV  275 (358)
T ss_pred             hhcCCceeeecccCCCccchhhhhc--ceEEEEeccch-h----hhhhhcc--cceeeeeccCcccccC---CCCCceEE
Confidence            4567899999999999999888765  78999999643 2    1111122  2577777777766542   36799999


Q ss_pred             EcCcccHHHHHHHHccccccC
Q 022962          198 ARAVAEMRILAEYCLPLVRVG  218 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~Lkpg  218 (289)
                      |..+..+..+...+..+|..|
T Consensus       276 CDmVEkP~rv~~li~~Wl~nG  296 (358)
T COG2933         276 CDMVEKPARVAALIAKWLVNG  296 (358)
T ss_pred             eehhcCcHHHHHHHHHHHHcc
Confidence            998888777777777777644

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.64  E-value=2.8  Score=31.96  Aligned_cols=105  Identities=18%  Similarity=0.141  Sum_probs=60.9

Q ss_pred             CCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEEEcCccc-HH
Q 022962          130 TGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVARAVAE-MR  205 (289)
Q Consensus       130 cG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~sn~~~~-~~  205 (289)
                      ||.|..|..+++..  .+.+|+.+|.+++.++.+++    .   .+.++.+|..+...-. ..-+..|.|++..-.+ ..
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~---~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n   76 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E---GVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN   76 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T---TSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c---ccccccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence            67778888887653  33589999999988766654    2   3678889988642110 0114688888764332 22


Q ss_pred             HHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeE
Q 022962          206 ILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASL  247 (289)
Q Consensus       206 ~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~  247 (289)
                      ..+-...+-+.|...++..... . +.    .+.++..|...
T Consensus        77 ~~~~~~~r~~~~~~~ii~~~~~-~-~~----~~~l~~~g~d~  112 (116)
T PF02254_consen   77 LLIALLARELNPDIRIIARVND-P-EN----AELLRQAGADH  112 (116)
T ss_dssp             HHHHHHHHHHTTTSEEEEEESS-H-HH----HHHHHHTT-SE
T ss_pred             HHHHHHHHHHCCCCeEEEEECC-H-HH----HHHHHHCCcCE
Confidence            3333444556677887765533 1 11    22445677653

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=91.60  E-value=0.42  Score=38.66  Aligned_cols=54  Identities=19%  Similarity=0.167  Sum_probs=30.7

Q ss_pred             EEcCCCChHHHHH--H--HHCCCCEEEEEeCChHHHHHHHHH--HHHcCCC-CEEEEeccc
Q 022962          127 DVGTGAGLPGLVL--A--IACPDWKVTLLESMNKRCVFLEHA--VSLTQLL-NVQIVRGRA  180 (289)
Q Consensus       127 DiGcG~G~~~l~l--a--~~~p~~~V~~iD~s~~~l~~a~~~--~~~~~l~-ni~~~~~d~  180 (289)
                      |||+..|.++...  +  ...+..+|+++|+++..++.++.+  +.-+... .++++....
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~   61 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV   61 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence            8999999444333  2  345789999999999999999998  5544321 255555443

; PDB: 2PY6_A.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=91.34  E-value=0.83  Score=41.76  Aligned_cols=99  Identities=14%  Similarity=0.122  Sum_probs=56.8

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccc-cCCCCcCCCCceE
Q 022962          119 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAET-LGKDVSFREQYDV  195 (289)
Q Consensus       119 ~~~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~-~~~~~~~~~~fD~  195 (289)
                      .+++.+||-.|+| .|..++.+|+......|++++.++...+.+++    ++.+.+ .....+..+ +... ...+.+|+
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~  239 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILEL-TGGRGVDC  239 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHH-cCCCCCcE
Confidence            3457889987764 25555667776643489999988877666554    343221 111111111 1000 01246999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+...-.  ...+..+.+.|+++|+++..
T Consensus       240 vld~~g~--~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         240 VIEAVGF--EETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             EEEccCC--HHHHHHHHHHhhcCCEEEEE
Confidence            8854221  24677777889999998753

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.26  E-value=3.4  Score=35.42  Aligned_cols=101  Identities=14%  Similarity=0.083  Sum_probs=63.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~  192 (289)
                      +.+||=.|++ |.+|..+++.+  .+.+|++++.+++....+.+.....  .++.++.+|+.+.....       ..-+.
T Consensus         5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   81 (238)
T PRK05786          5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSSTESARNVIEKAAKVLNA   81 (238)
T ss_pred             CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            6789999996 55677777653  4679999999988766554433332  26888888887532110       00134


Q ss_pred             ceEEEEcCcc---------------------cHHHHHHHHccccccCeEEEEEE
Q 022962          193 YDVAVARAVA---------------------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       193 fD~V~sn~~~---------------------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .|.++.++-.                     ..-.+++.+.+.++++|.+++..
T Consensus        82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  135 (238)
T PRK05786         82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS  135 (238)
T ss_pred             CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence            6888876411                     01233555566677888887654

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=91.20  E-value=0.74  Score=42.98  Aligned_cols=98  Identities=19%  Similarity=0.153  Sum_probs=55.6

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceE
Q 022962          119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDV  195 (289)
Q Consensus       119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~  195 (289)
                      +.++.+||=.|+|. |..++.+|+.....+|+++|.+++..+.+++    +|.+.  ++..+-+++...  ....+.+|+
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~i~~~~~~g~d~  262 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATA--TVNAGDPNAVEQVRELTGGGVDY  262 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCce--EeCCCchhHHHHHHHHhCCCCCE
Confidence            34577888888642 2233445555533379999999988777754    55532  221111111000  001136899


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-..-.  ...+..+.+.|+++|+++..
T Consensus       263 vid~~G~--~~~~~~~~~~l~~~G~iv~~  289 (371)
T cd08281         263 AFEMAGS--VPALETAYEITRRGGTTVTA  289 (371)
T ss_pred             EEECCCC--hHHHHHHHHHHhcCCEEEEE
Confidence            9854321  23556667789999998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=90.96  E-value=1.7  Score=39.58  Aligned_cols=93  Identities=15%  Similarity=0.129  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc---ccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---AETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d---~~~~~~~~~~~~~fD~V  196 (289)
                      ++.+||-.|||. |..++.+|+.....+|++++.++...+.+++    ++.+.  ++..+   +..+..   ..+.+|+|
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~---~~~~vd~v  235 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGADE--TVNLARDPLAAYAA---DKGDFDVV  235 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCCE--EEcCCchhhhhhhc---cCCCccEE
Confidence            478899988765 5555666766533389999999887765543    34422  22111   111111   12359999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +...-.  ...++.+.+.|+++|+++..
T Consensus       236 ld~~g~--~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         236 FEASGA--PAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             EECCCC--HHHHHHHHHHHhcCCEEEEE
Confidence            975432  23466777889999999864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK10458 DNA cytosine methylase; Provisional

Probab=90.52  E-value=18  Score=35.28  Aligned_cols=60  Identities=8%  Similarity=-0.091  Sum_probs=41.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG  184 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~  184 (289)
                      ..+++|+-||.|.+++.+-.. +.--|.++|+++.+.+..+.|...  ..+..++.+|+.++.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~  147 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDIT  147 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCc
Confidence            568999999999888777544 333578999999988877776321  112344556776654

>PRK07806 short chain dehydrogenase; Provisional

Probab=90.22  E-value=2.4  Score=36.72  Aligned_cols=103  Identities=17%  Similarity=0.049  Sum_probs=62.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCh-HHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMN-KRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~-~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~  191 (289)
                      +.++|-.|+.+ .+|..+++.+  .+.+|++++.+. ...+......+..+ .++.++.+|+.+...-. ..      -+
T Consensus         6 ~k~vlItGasg-giG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK07806          6 GKTALVTGSSR-GIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREEFG   83 (248)
T ss_pred             CcEEEEECCCC-cHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            57899999654 4677777643  467899988764 23333333333333 25778888887643110 00      03


Q ss_pred             CceEEEEcCcc-----------------cHHHHHHHHccccccCeEEEEEEc
Q 022962          192 QYDVAVARAVA-----------------EMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       192 ~fD~V~sn~~~-----------------~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      ..|.|+.++-.                 ....+++.+.+.++.+|.+++..+
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence            57988877411                 134567777777777788876643

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=90.16  E-value=0.7  Score=41.42  Aligned_cols=64  Identities=16%  Similarity=0.164  Sum_probs=43.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-----CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-----PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGK  185 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-----p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~  185 (289)
                      +...++|+|||.|.++-.++...     +...++.||........=+. .+.... ..++=+..||.++..
T Consensus        18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~-~~~~~~~~~~~R~riDI~dl~l   87 (259)
T PF05206_consen   18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNK-IRKDESEPKFERLRIDIKDLDL   87 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhh-hhccCCCCceEEEEEEeeccch
Confidence            36689999999999999999887     45789999986543322222 222221 135556678888754

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=89.93  E-value=1.3  Score=40.85  Aligned_cols=99  Identities=14%  Similarity=0.100  Sum_probs=56.8

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEecccc-ccCCCCcCCCCceE
Q 022962          119 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAE-TLGKDVSFREQYDV  195 (289)
Q Consensus       119 ~~~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~-~~~~~~~~~~~fD~  195 (289)
                      ++++.+||=.|+| .|..++.+|+......|+++|.+++..+.+++    +|.+.+ .....+.. .+... .....+|+
T Consensus       164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~  238 (351)
T cd08285         164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKL-TGGKGVDA  238 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHH-hCCCCCcE
Confidence            3457888888764 23334445666544479999999887766653    554321 11111110 01000 01246999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-..-.  ...+..+.+.|+++|+++..
T Consensus       239 vld~~g~--~~~~~~~~~~l~~~G~~v~~  265 (351)
T cd08285         239 VIIAGGG--QDTFEQALKVLKPGGTISNV  265 (351)
T ss_pred             EEECCCC--HHHHHHHHHHhhcCCEEEEe
Confidence            9864322  24567778889999998754

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=89.87  E-value=1.5  Score=39.26  Aligned_cols=96  Identities=24%  Similarity=0.188  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ++.+||=+|+|  .+|+.   +|+.....+|+++|.+++..+.+++    +|.+.+--.......+... .....+|+|+
T Consensus       120 ~g~~VlV~G~G--~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~-~~~~g~d~vi  192 (280)
T TIGR03366       120 KGRRVLVVGAG--MLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAEPEVLAERQGGL-QNGRGVDVAL  192 (280)
T ss_pred             CCCEEEEECCC--HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecCchhhHHHHHHH-hCCCCCCEEE
Confidence            37788888764  45544   4555543459999999988776654    4543211001001111000 0123589988


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      -..-.  ...++.+.+.|+++|++++.-
T Consensus       193 d~~G~--~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       193 EFSGA--TAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             ECCCC--hHHHHHHHHHhcCCCEEEEec
Confidence            54211  235666678899999998653

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=89.83  E-value=1.6  Score=40.32  Aligned_cols=98  Identities=14%  Similarity=0.064  Sum_probs=55.1

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCC---CCcCCCCce
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGK---DVSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~---~~~~~~~fD  194 (289)
                      +++.+||=.|+|+ |..++.+|+.. +.+|+++|.+++.++.+++    +|.+.+ .....+.+++..   .......+|
T Consensus       165 ~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d  239 (349)
T TIGR03201       165 KKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKARGLR  239 (349)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccCCCC
Confidence            4588999999854 55555566665 4589999999988777654    454321 111111111100   000012344


Q ss_pred             ----EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 ----VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ----~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                          +|+-. ... ...++.+.++|++||++++.
T Consensus       240 ~~~d~v~d~-~g~-~~~~~~~~~~l~~~G~iv~~  271 (349)
T TIGR03201       240 STGWKIFEC-SGS-KPGQESALSLLSHGGTLVVV  271 (349)
T ss_pred             CCcCEEEEC-CCC-hHHHHHHHHHHhcCCeEEEE
Confidence                55522 221 23556667789999999764

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=89.73  E-value=3.1  Score=38.84  Aligned_cols=113  Identities=19%  Similarity=0.157  Sum_probs=70.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEE-EeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~-iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ..+|.=+|||-|..=+......+ +.+++| +|.+++.   +++.++++|..    ...|++++...    ..+|+|...
T Consensus         3 ~~rVgViG~~~G~~h~~al~~~~~~~eLvaV~d~~~er---A~~~A~~~gi~----~y~~~eell~d----~Di~~V~ip   71 (343)
T TIGR01761         3 VQSVVVCGTRFGQFYLAAFAAAPERFELAGILAQGSER---SRALAHRLGVP----LYCEVEELPDD----IDIACVVVR   71 (343)
T ss_pred             CcEEEEEeHHHHHHHHHHHHhCCCCcEEEEEEcCCHHH---HHHHHHHhCCC----ccCCHHHHhcC----CCEEEEEeC
Confidence            45788899976643222222345 678777 6777654   66666777653    34677777532    357777764


Q ss_pred             C-c--ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeE
Q 022962          200 A-V--AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       200 ~-~--~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                      . .  .....+.   ..+|+-|=.++++++-. .+|.+++.+..++.|.....
T Consensus        72 t~~P~~~H~e~a---~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~v  120 (343)
T TIGR01761        72 SAIVGGQGSALA---RALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYLV  120 (343)
T ss_pred             CCCCCccHHHHH---HHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEEE
Confidence            2 1  1222333   34667777888888765 67888888888888876553

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=89.58  E-value=1.5  Score=35.19  Aligned_cols=89  Identities=17%  Similarity=0.190  Sum_probs=54.8

Q ss_pred             CCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc-------ccccCCCCcCCCCceEEEEcC-
Q 022962          131 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-------AETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       131 G~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d-------~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      |.|.+|..+|..+  .+.+|+.++.++ .++..++    .|+   ++...+       ...........+.||+|+... 
T Consensus         5 G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    5 GAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE----QGL---TITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             STSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH----HCE---EEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh----eeE---EEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            5667888877554  678999999987 4444332    232   222111       001111001136799999764 


Q ss_pred             cccHHHHHHHHccccccCeEEEEEEcC
Q 022962          201 VAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       201 ~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      -...+..++.+.+.+.++..+++....
T Consensus        77 a~~~~~~l~~l~~~~~~~t~iv~~qNG  103 (151)
T PF02558_consen   77 AYQLEQALQSLKPYLDPNTTIVSLQNG  103 (151)
T ss_dssp             GGGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred             ccchHHHHHHHhhccCCCcEEEEEeCC
Confidence            346788999999999999888877643

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=89.56  E-value=2.4  Score=37.35  Aligned_cols=91  Identities=22%  Similarity=0.089  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHHHHcC-CCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~-V~~iD~s~~~l~~a~~~~~~~~-l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ++.+||=.|+|. |..++.+|+... .+ |++++.+++..+.+++    .| .+.+.....   ...    ....+|+|+
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~~----~~~~~d~vl  164 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEA----LGPADPVAADTA---DEI----GGRGADVVI  164 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHH----cCCCccccccch---hhh----cCCCCCEEE
Confidence            477888888764 555556676654 45 9999999888766554    34 111111100   110    124689998


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .....  ...+..+.+.|+++|+++..-
T Consensus       165 ~~~~~--~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         165 EASGS--PSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             EccCC--hHHHHHHHHHhcCCcEEEEEe
Confidence            65322  235666778899999998653

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PTZ00357 methyltransferase; Provisional

Probab=89.46  E-value=1  Score=45.58  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=60.4

Q ss_pred             CeEEEEcCCCChHHHHH---HHHC-CCCEEEEEeCChHHHHHHHHHHHH-cCC--------CCEEEEeccccccCCCC--
Q 022962          123 LKLVDVGTGAGLPGLVL---AIAC-PDWKVTLLESMNKRCVFLEHAVSL-TQL--------LNVQIVRGRAETLGKDV--  187 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~l---a~~~-p~~~V~~iD~s~~~l~~a~~~~~~-~~l--------~ni~~~~~d~~~~~~~~--  187 (289)
                      ..|+=+|+|-|-+--..   +... -..+|++||.|+.++.+...+... ..-        +.|+++..|+.++..+.  
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            36899999999764332   2221 246899999997765555444222 112        13899999999985321  


Q ss_pred             ------cCCCCceEEEEc---Cccc---HHHHHHHHcccccc----CeE
Q 022962          188 ------SFREQYDVAVAR---AVAE---MRILAEYCLPLVRV----GGL  220 (289)
Q Consensus       188 ------~~~~~fD~V~sn---~~~~---~~~ll~~~~~~Lkp----gG~  220 (289)
                            ..-+++|+|||-   .+.+   -++-|..+.+.||+    +|.
T Consensus       782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                  001379999995   1111   24566666667765    665

>PLN02827 Alcohol dehydrogenase-like

Probab=89.42  E-value=1.6  Score=41.00  Aligned_cols=96  Identities=14%  Similarity=0.029  Sum_probs=54.6

Q ss_pred             CCCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec---cccc-cCCCCcCCC
Q 022962          119 CNSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAET-LGKDVSFRE  191 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~---d~~~-~~~~~~~~~  191 (289)
                      +.++.+||=.|+  |.+|+.   +|+......|+++|.+++..+.++    ++|.+.+--...   ++.+ +..  ...+
T Consensus       191 ~~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~----~lGa~~~i~~~~~~~~~~~~v~~--~~~~  262 (378)
T PLN02827        191 VSKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK----TFGVTDFINPNDLSEPIQQVIKR--MTGG  262 (378)
T ss_pred             CCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCcEEEcccccchHHHHHHHH--HhCC
Confidence            345889999876  445544   455554446999999988776664    356532210011   1111 100  0113


Q ss_pred             CceEEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962          192 QYDVAVARAVAEMRILAEYCLPLVRVG-GLFVAA  224 (289)
Q Consensus       192 ~fD~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~  224 (289)
                      .+|+|+-..-.  ...+..+.+.+++| |++++.
T Consensus       263 g~d~vid~~G~--~~~~~~~l~~l~~g~G~iv~~  294 (378)
T PLN02827        263 GADYSFECVGD--TGIATTALQSCSDGWGLTVTL  294 (378)
T ss_pred             CCCEEEECCCC--hHHHHHHHHhhccCCCEEEEE
Confidence            68998854322  12445566788998 998764

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=88.99  E-value=1.8  Score=39.36  Aligned_cols=85  Identities=20%  Similarity=0.103  Sum_probs=51.3

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+||=+|||+ |..++.+|+......|+++|.+++.++.+..    ..     ++  |..+.     ....||+|+-..
T Consensus       145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~----~~-----~i--~~~~~-----~~~g~Dvvid~~  208 (308)
T TIGR01202       145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG----YE-----VL--DPEKD-----PRRDYRAIYDAS  208 (308)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh----cc-----cc--Chhhc-----cCCCCCEEEECC
Confidence            56788888652 4444556666655568889998877665543    11     11  11110     124689988543


Q ss_pred             cccHHHHHHHHccccccCeEEEEE
Q 022962          201 VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       201 ~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      -.  ...++.+.+.|+++|+++++
T Consensus       209 G~--~~~~~~~~~~l~~~G~iv~~  230 (308)
T TIGR01202       209 GD--PSLIDTLVRRLAKGGEIVLA  230 (308)
T ss_pred             CC--HHHHHHHHHhhhcCcEEEEE
Confidence            22  23566677889999999864

>PRK06940 short chain dehydrogenase; Provisional

Probab=88.87  E-value=1.7  Score=38.82  Aligned_cols=98  Identities=16%  Similarity=0.056  Sum_probs=58.8

Q ss_pred             eEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC------cCCCCceEE
Q 022962          124 KLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV------SFREQYDVA  196 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~------~~~~~fD~V  196 (289)
                      .+|=-|+  |.+|..+|+.+ .+.+|+++|.++..++.+.+..+..+. ++.++..|+.+...-.      ...+..|.+
T Consensus         4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l   80 (275)
T PRK06940          4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL   80 (275)
T ss_pred             EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence            4555565  46888888765 457999999998766555444444332 5778888886642100      001468999


Q ss_pred             EEcCc-----cc-----------HHHHHHHHccccccCeEEEEE
Q 022962          197 VARAV-----AE-----------MRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~-----~~-----------~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +.|+-     .+           .-.+++.+.+.++++|..+++
T Consensus        81 i~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i  124 (275)
T PRK06940         81 VHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI  124 (275)
T ss_pred             EECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence            98841     11           123445555566666666544

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=88.80  E-value=2.7  Score=38.99  Aligned_cols=96  Identities=11%  Similarity=0.036  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEe-c-cccc-cCCCCcCCCCce
Q 022962          120 NSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-G-RAET-LGKDVSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG--~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~-~-d~~~-~~~~~~~~~~fD  194 (289)
                      .++.+||=.|++  .|..++.+|+.. +.+|++++.+++..+.++.   .+|.+.+--.. . +..+ +...  ..+.+|
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~--~~~gvD  230 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRY--FPEGID  230 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHH--CCCCcE
Confidence            357899999983  566666777765 5789999999887666542   35654221111 1 2211 1100  123689


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+-..- .  ..+..+.+.|+++|+++++
T Consensus       231 ~v~d~vG-~--~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        231 IYFDNVG-G--DMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             EEEECCC-H--HHHHHHHHHhccCCEEEEE
Confidence            9985432 2  3567778899999998864

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=88.63  E-value=1.8  Score=39.55  Aligned_cols=96  Identities=21%  Similarity=0.189  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccc-cccCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRA-ETLGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~-~~~~~~~~~~~~fD~V~  197 (289)
                      ++.+||-.|+|. |..++.+|+.. +.+|+++..+++..+.+++    ++.+.+ .....+. +.+... .....+|+++
T Consensus       159 ~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~-~~~~~vd~vl  232 (337)
T cd08261         159 AGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLREL-TDGEGADVVI  232 (337)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHH-hCCCCCCEEE
Confidence            477999998763 55666677664 6789999888887766643    343222 1111111 111100 0124599999


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .....  ...+..+.+.|+++|.++..
T Consensus       233 d~~g~--~~~~~~~~~~l~~~G~~i~~  257 (337)
T cd08261         233 DATGN--PASMEEAVELVAHGGRVVLV  257 (337)
T ss_pred             ECCCC--HHHHHHHHHHHhcCCEEEEE
Confidence            76322  23566777889999998754

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=88.51  E-value=2.3  Score=36.88  Aligned_cols=79  Identities=13%  Similarity=0.005  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC---------CcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD---------VSF  189 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~---------~~~  189 (289)
                      ++.+||=.|+ +|.+|..+++.+  .+.+|+++|.+....+...+..+..+..++.++..|+......         ...
T Consensus        11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (247)
T PRK08945         11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ   89 (247)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence            3778999995 666788877653  4679999999987766665555555544577777777422100         000


Q ss_pred             CCCceEEEEcC
Q 022962          190 REQYDVAVARA  200 (289)
Q Consensus       190 ~~~fD~V~sn~  200 (289)
                      .++.|.|+.++
T Consensus        90 ~~~id~vi~~A  100 (247)
T PRK08945         90 FGRLDGVLHNA  100 (247)
T ss_pred             hCCCCEEEECC
Confidence            14689999874

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=88.38  E-value=0.82  Score=43.10  Aligned_cols=105  Identities=16%  Similarity=0.137  Sum_probs=67.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHH-------HcCCC--CEEEEeccccccCCCCcC
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS-------LTQLL--NVQIVRGRAETLGKDVSF  189 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~-------~~~l~--ni~~~~~d~~~~~~~~~~  189 (289)
                      +.+++.-.|+|.|-|.+....|......+=+|++++......+..+..       .+|-.  .++.++++..+.......
T Consensus       190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI  269 (419)
T KOG3924|consen  190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI  269 (419)
T ss_pred             cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence            456788999999999988777766555666788888766666555432       23432  377888877654322122


Q ss_pred             CCCceEEEEcCcc---cHHHHHHHHccccccCeEEEE
Q 022962          190 REQYDVAVARAVA---EMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       190 ~~~fD~V~sn~~~---~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      ....++|++|.++   ++.-=++++..-+++|-+++-
T Consensus       270 ~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS  306 (419)
T KOG3924|consen  270 QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIIS  306 (419)
T ss_pred             hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEec
Confidence            3568999999654   222222355566778888773

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=88.33  E-value=4.7  Score=36.50  Aligned_cols=96  Identities=17%  Similarity=0.126  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC-CCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~-~~~~~~~fD~V~s  198 (289)
                      ++.+||-+|+|. |...+.+|+......|++++.+++..+.+++    .+.+  .++..+-.+... .....+.+|+++.
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~vd~v~~  232 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT--ETVDPSREDPEAQKEDNPYGFDVVIE  232 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe--EEecCCCCCHHHHHHhcCCCCcEEEE
Confidence            478999998642 4455556666533348999999887776643    3443  222221111100 0001256999997


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEE
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ....  ...+..+.+.|+++|+++..
T Consensus       233 ~~~~--~~~~~~~~~~l~~~G~~v~~  256 (334)
T cd08234         233 ATGV--PKTLEQAIEYARRGGTVLVF  256 (334)
T ss_pred             CCCC--hHHHHHHHHHHhcCCEEEEE
Confidence            5322  34666777889999998764

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=88.13  E-value=2.4  Score=39.01  Aligned_cols=97  Identities=11%  Similarity=0.136  Sum_probs=52.9

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCCCCcCCCCce-EEE
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYD-VAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~~~~~~~~fD-~V~  197 (289)
                      ++.+||=.|+|+ |..++.+|+......|+++|.+++..+.++    ++|.+.+ .....+..++... .....+| +|+
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~-~~~~~~d~~v~  234 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK----SLGAMQTFNSREMSAPQIQSV-LRELRFDQLIL  234 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCceEecCcccCHHHHHHH-hcCCCCCeEEE
Confidence            477888888642 223334555554334899999998877664    3454321 1111111111100 0123577 544


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                       ..... ...+..+.+.|++||++++.
T Consensus       235 -d~~G~-~~~~~~~~~~l~~~G~iv~~  259 (347)
T PRK10309        235 -ETAGV-PQTVELAIEIAGPRAQLALV  259 (347)
T ss_pred             -ECCCC-HHHHHHHHHHhhcCCEEEEE
Confidence             33222 34667777899999998865

>PRK08703 short chain dehydrogenase; Provisional

Probab=87.97  E-value=2.2  Score=36.77  Aligned_cols=78  Identities=15%  Similarity=0.036  Sum_probs=49.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC----------CcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD----------VSF  189 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~----------~~~  189 (289)
                      +.+|+=.|+ +|.+|..+++.+  .+.+|++++.++..++.....+...+...+.++..|+.+....          ..+
T Consensus         6 ~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~   84 (239)
T PRK08703          6 DKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEAT   84 (239)
T ss_pred             CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHh
Confidence            578999996 555688877653  4689999999998766655555444433455666666432100          001


Q ss_pred             CCCceEEEEcC
Q 022962          190 REQYDVAVARA  200 (289)
Q Consensus       190 ~~~fD~V~sn~  200 (289)
                      .+..|.|+.++
T Consensus        85 ~~~id~vi~~a   95 (239)
T PRK08703         85 QGKLDGIVHCA   95 (239)
T ss_pred             CCCCCEEEEec
Confidence            14579998773

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=87.83  E-value=1.4  Score=40.37  Aligned_cols=107  Identities=18%  Similarity=0.234  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC--------------------CCCEEEEEeCCh--HHHHHHHHHHHHc----------
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC--------------------PDWKVTLLESMN--KRCVFLEHAVSLT----------  168 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~--------------------p~~~V~~iD~s~--~~l~~a~~~~~~~----------  168 (289)
                      +..+||.||-|.|.=-+.+|-.+                    +...|++||+-+  ..++.....+...          
T Consensus        86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~  165 (315)
T PF11312_consen   86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA  165 (315)
T ss_pred             cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence            35799999999987666665443                    125899999875  3344444433322          


Q ss_pred             -----CCC--CEEEEeccccccCCCCc---CC-CCceEEEEc---------CcccHHHHHHHHccccccCeEEEEEEcC
Q 022962          169 -----QLL--NVQIVRGRAETLGKDVS---FR-EQYDVAVAR---------AVAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       169 -----~l~--ni~~~~~d~~~~~~~~~---~~-~~fD~V~sn---------~~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                           .-+  +++|.+.|+.++..+..   +. ...|+|...         ....--.++..+...++||-.|++...+
T Consensus       166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp  244 (315)
T PF11312_consen  166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP  244 (315)
T ss_pred             ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence                 111  58999999988765310   01 134555432         2345578899999999999999987654

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=87.62  E-value=2.2  Score=39.01  Aligned_cols=95  Identities=20%  Similarity=0.097  Sum_probs=53.5

Q ss_pred             CCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ++.+||=+|+  |.+|+.   +|+.....+|+++|.+++..+.+++    +|.+.+ .....+.+.+... .....+|+|
T Consensus       163 ~g~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~-~~~~~~d~v  235 (339)
T cd08239         163 GRDTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIREL-TSGAGADVA  235 (339)
T ss_pred             CCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHH-hCCCCCCEE
Confidence            4778888876  445544   4555443339999999987766643    454321 1111111111100 012369999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +-..-.  ...+..+.+.|+++|++++.
T Consensus       236 id~~g~--~~~~~~~~~~l~~~G~~v~~  261 (339)
T cd08239         236 IECSGN--TAARRLALEAVRPWGRLVLV  261 (339)
T ss_pred             EECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence            854322  23445566789999998864

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=87.45  E-value=3.7  Score=38.30  Aligned_cols=98  Identities=9%  Similarity=0.011  Sum_probs=55.4

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEe--ccccc-cCCCCcCCCCc
Q 022962          119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVR--GRAET-LGKDVSFREQY  193 (289)
Q Consensus       119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~--~d~~~-~~~~~~~~~~f  193 (289)
                      ++++.+||=.|+|+ |..++.+|+.....+|+++|.+++..+.+++    +|.+.+ ....  .++.+ +...  ..+.+
T Consensus       183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~--~~~g~  256 (368)
T TIGR02818       183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEI--TDGGV  256 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHH--hCCCC
Confidence            34578999898742 3334445666543489999999988777754    455321 1110  01111 1000  01358


Q ss_pred             eEEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962          194 DVAVARAVAEMRILAEYCLPLVRVG-GLFVAA  224 (289)
Q Consensus       194 D~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~  224 (289)
                      |+|+-..-.  ...+..+.+.++++ |++++.
T Consensus       257 d~vid~~G~--~~~~~~~~~~~~~~~G~~v~~  286 (368)
T TIGR02818       257 DYSFECIGN--VNVMRAALECCHKGWGESIII  286 (368)
T ss_pred             CEEEECCCC--HHHHHHHHHHhhcCCCeEEEE
Confidence            988854221  23456666788886 998764

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=87.42  E-value=3.8  Score=37.23  Aligned_cols=95  Identities=11%  Similarity=0.016  Sum_probs=57.7

Q ss_pred             CCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec--cccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG--RAETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~--d~~~~~~~~~~~~~fD~V  196 (289)
                      ++.+||=.|.  |.|..++.+|+.. +.+|++++.+++..+.++    .+|.+.+--...  +..+.... ...+.+|+|
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~-~~~~gvdvv  211 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKK-ASPDGYDCY  211 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHH-hCCCCeEEE
Confidence            4789988884  4566666677665 568999999988766664    356543211111  11111000 012469999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +-.. ..  ..+..+.+.|+++|+++..
T Consensus       212 ~d~~-G~--~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       212 FDNV-GG--EFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             EECC-CH--HHHHHHHHHhCcCcEEEEe
Confidence            8542 22  2346777899999999864

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PLN02740 Alcohol dehydrogenase-like

Probab=87.41  E-value=2.4  Score=39.81  Aligned_cols=95  Identities=14%  Similarity=0.052  Sum_probs=55.7

Q ss_pred             CCCCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc-----ccc-cCCCCc
Q 022962          118 SCNSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-----AET-LGKDVS  188 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d-----~~~-~~~~~~  188 (289)
                      .++++.+||=+|+  |.+|+.   +|+.....+|+++|.+++.++.+++    +|.+.  ++..+     ..+ +...  
T Consensus       195 ~~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~--  264 (381)
T PLN02740        195 NVQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREM--  264 (381)
T ss_pred             CCCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHH--
Confidence            3456889999986  455544   4555543379999999988777754    56532  22111     111 1100  


Q ss_pred             CCCCceEEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962          189 FREQYDVAVARAVAEMRILAEYCLPLVRVG-GLFVAA  224 (289)
Q Consensus       189 ~~~~fD~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~  224 (289)
                      ..+.+|+|+-..-.  ...+..+...+++| |++++.
T Consensus       265 ~~~g~dvvid~~G~--~~~~~~a~~~~~~g~G~~v~~  299 (381)
T PLN02740        265 TGGGVDYSFECAGN--VEVLREAFLSTHDGWGLTVLL  299 (381)
T ss_pred             hCCCCCEEEECCCC--hHHHHHHHHhhhcCCCEEEEE
Confidence            11269998865322  23555666778886 988754

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=87.36  E-value=2.4  Score=40.25  Aligned_cols=71  Identities=20%  Similarity=0.349  Sum_probs=47.4

Q ss_pred             CeEEEEcCCCChHHHHHHHH---CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          123 LKLVDVGTGAGLPGLVLAIA---CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~---~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .+||=|||  |..|...|..   ..+.+|+..|.|.+.++.+.....    .++++++.|+.+.+.....=..+|+|++-
T Consensus         2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li~~~d~VIn~   75 (389)
T COG1748           2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALIKDFDLVINA   75 (389)
T ss_pred             CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHHhcCCEEEEe
Confidence            36889999  5666665543   234799999999887766655322    26888888888763221111356999976

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=87.30  E-value=3.5  Score=37.73  Aligned_cols=98  Identities=19%  Similarity=0.140  Sum_probs=56.5

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEE-EEecc----ccccCCCCcCCCCc
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQ-IVRGR----AETLGKDVSFREQY  193 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~-~~~~d----~~~~~~~~~~~~~f  193 (289)
                      .++.+||=.|+|+ |..++.+|+..+...|++++.+++..+.+++    .+.+.+- ....+    ...+... .....+
T Consensus       161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~-~~~~~~  235 (343)
T cd05285         161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAEL-LGGKGP  235 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHH-hCCCCC
Confidence            3577888877654 5555666766543349999998887766644    3443221 11111    1111100 012459


Q ss_pred             eEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          194 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       194 D~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+|+-..-.  ...+..+.+.|+++|+++..
T Consensus       236 d~vld~~g~--~~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         236 DVVIECTGA--ESCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             CEEEECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence            999965322  22566777889999998754

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=87.05  E-value=1.7  Score=40.43  Aligned_cols=99  Identities=14%  Similarity=0.098  Sum_probs=61.8

Q ss_pred             CCCCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec----cccccCCCCcCCC
Q 022962          117 SSCNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG----RAETLGKDVSFRE  191 (289)
Q Consensus       117 ~~~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~----d~~~~~~~~~~~~  191 (289)
                      .+.+++.+|.=+|||. |.-++.-|+.....+|+|||++++++++|++    +|..  .+++.    |+-+.-.. ..+.
T Consensus       181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT--~~vn~~~~~~vv~~i~~-~T~g  253 (366)
T COG1062         181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT--HFVNPKEVDDVVEAIVE-LTDG  253 (366)
T ss_pred             ccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc--eeecchhhhhHHHHHHH-hcCC
Confidence            4567799999999985 6666666777788899999999999988876    4542  33332    12111010 0112


Q ss_pred             CceEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          192 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       192 ~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..|.++- ...+. ..++++...+.++|..++.
T Consensus       254 G~d~~~e-~~G~~-~~~~~al~~~~~~G~~v~i  284 (366)
T COG1062         254 GADYAFE-CVGNV-EVMRQALEATHRGGTSVII  284 (366)
T ss_pred             CCCEEEE-ccCCH-HHHHHHHHHHhcCCeEEEE
Confidence            4555531 11222 2666666777778998764

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=86.94  E-value=3.3  Score=37.40  Aligned_cols=95  Identities=13%  Similarity=0.054  Sum_probs=57.8

Q ss_pred             CCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceE
Q 022962          120 NSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDV  195 (289)
Q Consensus       120 ~~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~  195 (289)
                      .++.+||=.|.  |.|..++.+|+.. +.+|++++.+++..+.+++    +|.+.+  +..+-+++...  ....+.+|+
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~----~Ga~~v--i~~~~~~~~~~v~~~~~~gvd~  214 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE----LGFDAV--FNYKTVSLEEALKEAAPDGIDC  214 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCEE--EeCCCccHHHHHHHHCCCCcEE
Confidence            35788888874  4455566677765 5689999999887766654    565332  21111111000  001245899


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-.. ..  ..++.+.+.|+++|+++..
T Consensus       215 vld~~-g~--~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         215 YFDNV-GG--EFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             EEECC-CH--HHHHHHHHhhccCCEEEEE
Confidence            88542 22  4567778899999998754

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=86.53  E-value=12  Score=28.37  Aligned_cols=109  Identities=18%  Similarity=0.177  Sum_probs=68.2

Q ss_pred             eEEEEcCCCChHHHH--HHHHCCCCEEE-EEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          124 KLVDVGTGAGLPGLV--LAIACPDWKVT-LLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~--la~~~p~~~V~-~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +|.=||+|...-...  +....++.+++ .+|.+++..+.+   ++..+..    ...|++++...    ...|+|+...
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~---~~~~~~~----~~~~~~~ll~~----~~~D~V~I~t   70 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAF---AEKYGIP----VYTDLEELLAD----EDVDAVIIAT   70 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH---HHHTTSE----EESSHHHHHHH----TTESEEEEES
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH---HHHhccc----chhHHHHHHHh----hcCCEEEEec
Confidence            466688865532222  22233677876 579988764433   5556543    55677776432    4689998653


Q ss_pred             -cccHHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHhCCe
Q 022962          201 -VAEMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGAS  246 (289)
Q Consensus       201 -~~~~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~g~~  246 (289)
                       ......++.   .+|+-|-.++++++. ...+++.++.+..++.|..
T Consensus        71 p~~~h~~~~~---~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~  115 (120)
T PF01408_consen   71 PPSSHAEIAK---KALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVK  115 (120)
T ss_dssp             SGGGHHHHHH---HHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred             CCcchHHHHH---HHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence             333334443   456667788888864 5678888888888888865

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.50  E-value=1.7  Score=40.07  Aligned_cols=47  Identities=9%  Similarity=-0.034  Sum_probs=37.2

Q ss_pred             CCCCCCCeEEEEcCCCChHH-HHHHHHCCCCEEEEEeCChHHHHHHHH
Q 022962          117 SSCNSNLKLVDVGTGAGLPG-LVLAIACPDWKVTLLESMNKRCVFLEH  163 (289)
Q Consensus       117 ~~~~~~~~VLDiGcG~G~~~-l~la~~~p~~~V~~iD~s~~~l~~a~~  163 (289)
                      .+.++|.++.=+|+|+=.++ +.-|+.....+++|||++++..+.|++
T Consensus       188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~  235 (375)
T KOG0022|consen  188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE  235 (375)
T ss_pred             cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence            46778999999999864444 344667778999999999999887766

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=86.49  E-value=2.5  Score=39.32  Aligned_cols=95  Identities=13%  Similarity=0.170  Sum_probs=57.1

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc----cCCCCcCCCCce
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~----~~~~~~~~~~fD  194 (289)
                      .++.+||=.|+|+ |..++.+|+......|+++|.++...+.+++    .+.+  .++..+-.+    +... . ...+|
T Consensus       185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~-~-~~~~d  256 (365)
T cd08278         185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREI-T-GGGVD  256 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHH-h-CCCCc
Confidence            4578888887643 4455556666654479999999988766654    4432  122211111    1100 1 24689


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+-..-.  ...+..+.+.|+++|+++..
T Consensus       257 ~vld~~g~--~~~~~~~~~~l~~~G~~v~~  284 (365)
T cd08278         257 YALDTTGV--PAVIEQAVDALAPRGTLALV  284 (365)
T ss_pred             EEEECCCC--cHHHHHHHHHhccCCEEEEe
Confidence            99865322  23566777889999998864

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.89  E-value=2.3  Score=39.18  Aligned_cols=97  Identities=21%  Similarity=0.153  Sum_probs=58.2

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEE-eccccc-cCCCCcCCCCc
Q 022962          118 SCNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIV-RGRAET-LGKDVSFREQY  193 (289)
Q Consensus       118 ~~~~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~-~~d~~~-~~~~~~~~~~f  193 (289)
                      .+.+|++|-=+|.| -|.+++.+|++. +.+|++||-+.+.   -++..+.+|.+. +.+. -.|+-. +..  ..+.-.
T Consensus       178 g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~k---keea~~~LGAd~fv~~~~d~d~~~~~~~--~~dg~~  251 (360)
T KOG0023|consen  178 GLGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKK---KEEAIKSLGADVFVDSTEDPDIMKAIMK--TTDGGI  251 (360)
T ss_pred             CCCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchh---HHHHHHhcCcceeEEecCCHHHHHHHHH--hhcCcc
Confidence            34568888777765 588888899886 6899999999744   344566778753 2221 112111 111  112334


Q ss_pred             eEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          194 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       194 D~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |.|.+-+...++    .+..+||++|.+++.
T Consensus       252 ~~v~~~a~~~~~----~~~~~lk~~Gt~V~v  278 (360)
T KOG0023|consen  252 DTVSNLAEHALE----PLLGLLKVNGTLVLV  278 (360)
T ss_pred             eeeeeccccchH----HHHHHhhcCCEEEEE
Confidence            544433333344    444679999999865

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=85.86  E-value=2.8  Score=41.83  Aligned_cols=80  Identities=14%  Similarity=0.022  Sum_probs=51.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHc-----C---CCCEEEEeccccccCCCCcC
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLT-----Q---LLNVQIVRGRAETLGKDVSF  189 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~-----~---l~ni~~~~~d~~~~~~~~~~  189 (289)
                      +.+..||=.|+. |.+|..+++.+  .+.+|++++.+...+..........     |   ..++.++.+|+.+...-...
T Consensus        78 ~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         78 KDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             CCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            357788888874 66788877553  4679999999987765544433321     1   12588899999864321001


Q ss_pred             CCCceEEEEcC
Q 022962          190 REQYDVAVARA  200 (289)
Q Consensus       190 ~~~fD~V~sn~  200 (289)
                      -+..|+|++++
T Consensus       157 LggiDiVVn~A  167 (576)
T PLN03209        157 LGNASVVICCI  167 (576)
T ss_pred             hcCCCEEEEcc
Confidence            14589999874

>PRK07102 short chain dehydrogenase; Provisional

Probab=85.85  E-value=4.3  Score=35.06  Aligned_cols=75  Identities=12%  Similarity=0.020  Sum_probs=49.4

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC----cCCCCceEEE
Q 022962          124 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----SFREQYDVAV  197 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~----~~~~~fD~V~  197 (289)
                      +|+=.|+ +|.+|..+++.+  .+.+|+++|.++...+...+.....+-.++.++..|+.+...-.    .....+|.++
T Consensus         3 ~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv   81 (243)
T PRK07102          3 KILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL   81 (243)
T ss_pred             EEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence            6788885 566788877654  36799999999876655444443333347889999988753210    0113579999


Q ss_pred             Ec
Q 022962          198 AR  199 (289)
Q Consensus       198 sn  199 (289)
                      .+
T Consensus        82 ~~   83 (243)
T PRK07102         82 IA   83 (243)
T ss_pred             EC
Confidence            87

>PRK08324 short chain dehydrogenase; Validated

Probab=85.76  E-value=6.9  Score=39.94  Aligned_cols=101  Identities=13%  Similarity=-0.024  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~  192 (289)
                      +.+||=.|+++ .+|..+++.+  .+.+|+++|.++..++.+.......  .++.++..|+.+...-.       ...+.
T Consensus       422 gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~  498 (681)
T PRK08324        422 GKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFGG  498 (681)
T ss_pred             CCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            57888888754 4677776543  3679999999987766554433322  36888888876532100       00136


Q ss_pred             ceEEEEcCcc-----------------------cHHHHHHHHcccccc---CeEEEEEE
Q 022962          193 YDVAVARAVA-----------------------EMRILAEYCLPLVRV---GGLFVAAK  225 (289)
Q Consensus       193 fD~V~sn~~~-----------------------~~~~ll~~~~~~Lkp---gG~l~~~~  225 (289)
                      +|+|+.++-.                       ....+++.+.+.++.   +|.+++..
T Consensus       499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs  557 (681)
T PRK08324        499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA  557 (681)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            8999988410                       023556666777766   68887654

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=85.71  E-value=3.3  Score=39.26  Aligned_cols=96  Identities=16%  Similarity=0.023  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec---cccc-cCCCCcCCCC
Q 022962          120 NSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAET-LGKDVSFREQ  192 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~---d~~~-~~~~~~~~~~  192 (289)
                      .++.+||=.|+  |.+++.   +|+......|+.+|.+++.++.+++    +|.+  .+...   +..+ +... .....
T Consensus       184 ~~g~~VlV~G~--G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~-~~~~g  254 (393)
T TIGR02819       184 GPGSTVYIAGA--GPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQI-LGEPE  254 (393)
T ss_pred             CCCCEEEEECC--CHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHH-cCCCC
Confidence            34777776666  455544   5555544457778998877776655    4553  12211   1111 1100 01235


Q ss_pred             ceEEEEcCccc------------HHHHHHHHccccccCeEEEEE
Q 022962          193 YDVAVARAVAE------------MRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       193 fD~V~sn~~~~------------~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+|+-..-..            ....++.+..++++||++++.
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~  298 (393)
T TIGR02819       255 VDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP  298 (393)
T ss_pred             CcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence            89988532111            124677778899999999874

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.52  E-value=8  Score=34.87  Aligned_cols=92  Identities=10%  Similarity=0.102  Sum_probs=54.5

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc--------C----------CCCEEEEeccccccCC
Q 022962          124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--------Q----------LLNVQIVRGRAETLGK  185 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~--------~----------l~ni~~~~~d~~~~~~  185 (289)
                      +|.=||+|+=..++.......+.+|+++|.+++.++.+++.++.+        .          ..++++ ..|..+.. 
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~-   82 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV-   82 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh-
Confidence            577778764333333322334679999999999988887654221        1          123432 23333211 


Q ss_pred             CCcCCCCceEEEEcCccc---HHHHHHHHccccccCeEEE
Q 022962          186 DVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       186 ~~~~~~~fD~V~sn~~~~---~~~ll~~~~~~LkpgG~l~  222 (289)
                           ...|+|+.....+   ...+++++...++++-.+.
T Consensus        83 -----~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~  117 (287)
T PRK08293         83 -----KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA  117 (287)
T ss_pred             -----cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE
Confidence                 3469988764433   4677788888887776553

>TIGR00936 ahcY adenosylhomocysteinase

Probab=85.50  E-value=11  Score=36.05  Aligned_cols=86  Identities=13%  Similarity=0.127  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .+.+|+=+|+|.  +|..+|+.  .-+.+|+++|.++.....+.    ..|.   .+.  +.++..      ...|+|++
T Consensus       194 ~Gk~VvViG~G~--IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~----~~G~---~v~--~leeal------~~aDVVIt  256 (406)
T TIGR00936       194 AGKTVVVAGYGW--CGKGIAMRARGMGARVIVTEVDPIRALEAA----MDGF---RVM--TMEEAA------KIGDIFIT  256 (406)
T ss_pred             CcCEEEEECCCH--HHHHHHHHHhhCcCEEEEEeCChhhHHHHH----hcCC---EeC--CHHHHH------hcCCEEEE
Confidence            488999999886  44444432  23679999999986543332    2343   222  223321      34699886


Q ss_pred             cCcccHHHHH-HHHccccccCeEEEEEE
Q 022962          199 RAVAEMRILA-EYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       199 n~~~~~~~ll-~~~~~~LkpgG~l~~~~  225 (289)
                      .. .. ..++ .+....+|+|++++..-
T Consensus       257 aT-G~-~~vI~~~~~~~mK~GailiN~G  282 (406)
T TIGR00936       257 AT-GN-KDVIRGEHFENMKDGAIVANIG  282 (406)
T ss_pred             CC-CC-HHHHHHHHHhcCCCCcEEEEEC
Confidence            43 22 3344 34778899999987643

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd08293 PTGR2 Prostaglandin reductase

Probab=85.43  E-value=4.4  Score=36.99  Aligned_cols=94  Identities=12%  Similarity=0.098  Sum_probs=55.8

Q ss_pred             CeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEe-ccccc-cCCCCcCCCCceEEEE
Q 022962          123 LKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAET-LGKDVSFREQYDVAVA  198 (289)
Q Consensus       123 ~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~-~d~~~-~~~~~~~~~~fD~V~s  198 (289)
                      .+||=.|.  |.|..++.+|+.....+|++++.+++..+.+++   .+|.+.+-... .+..+ +..  ..++.+|+|+-
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~---~lGa~~vi~~~~~~~~~~i~~--~~~~gvd~vid  230 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS---ELGFDAAINYKTDNVAERLRE--LCPEGVDVYFD  230 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH---hcCCcEEEECCCCCHHHHHHH--HCCCCceEEEE
Confidence            78888886  455566667776533389999999877665544   25654321111 11111 110  01246999985


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEE
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..-..   .+..+.+.|+++|+++..
T Consensus       231 ~~g~~---~~~~~~~~l~~~G~iv~~  253 (345)
T cd08293         231 NVGGE---ISDTVISQMNENSHIILC  253 (345)
T ss_pred             CCCcH---HHHHHHHHhccCCEEEEE
Confidence            43221   246677899999999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=85.34  E-value=7.4  Score=35.18  Aligned_cols=93  Identities=20%  Similarity=0.173  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+||-.|+| .|..++.+|+.. +.+|++++.+++..+.+++    .+.+.+  +..+-.+....  ..+.+|+++..
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~--~~~~~d~vi~~  232 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK----LGADEV--VDSGAELDEQA--AAGGADVILVT  232 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----hCCcEE--eccCCcchHHh--ccCCCCEEEEC
Confidence            47789999886 444444555554 5689999999988766633    343221  11111111000  11458999865


Q ss_pred             CcccHHHHHHHHccccccCeEEEEE
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ...  ...+..+.+.|+++|.++..
T Consensus       233 ~~~--~~~~~~~~~~l~~~G~~i~~  255 (330)
T cd08245         233 VVS--GAAAEAALGGLRRGGRIVLV  255 (330)
T ss_pred             CCc--HHHHHHHHHhcccCCEEEEE
Confidence            322  23566777889999998865

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=85.32  E-value=2.1  Score=40.56  Aligned_cols=103  Identities=21%  Similarity=0.233  Sum_probs=59.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc----------cCCCCcC-
Q 022962          123 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----------LGKDVSF-  189 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~----------~~~~~~~-  189 (289)
                      .+|-=+|  -|+.|+.+|..+  .+.+|+|+|+++..++..+.     |  ...+..-+.++          +....++ 
T Consensus        10 ~~I~ViG--LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G--~~~i~e~~~~~~v~~~v~~g~lraTtd~~   80 (436)
T COG0677          10 ATIGVIG--LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G--ESYIEEPDLDEVVKEAVESGKLRATTDPE   80 (436)
T ss_pred             eEEEEEc--cccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C--cceeecCcHHHHHHHHHhcCCceEecChh
Confidence            4555554  457777777654  46899999999998877654     2  12222222221          0000000 


Q ss_pred             -CCCceEEEEc-C----------cccHHHHHHHHccccccCeEEEEEEc--CCcHHHHH
Q 022962          190 -REQYDVAVAR-A----------VAEMRILAEYCLPLVRVGGLFVAAKG--HDPQEEVK  234 (289)
Q Consensus       190 -~~~fD~V~sn-~----------~~~~~~ll~~~~~~LkpgG~l~~~~g--~~~~~ei~  234 (289)
                       -...|+++.. .          +.-.....+.+.+.|++|-..++++-  +...+++.
T Consensus        81 ~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~  139 (436)
T COG0677          81 ELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVV  139 (436)
T ss_pred             hcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHH
Confidence             0145665533 1          23457888899999999999888763  34455543

>PRK12939 short chain dehydrogenase; Provisional

Probab=85.26  E-value=6.1  Score=34.00  Aligned_cols=77  Identities=16%  Similarity=0.058  Sum_probs=50.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~~  192 (289)
                      +.++|=.|+ +|.+|..+++.+  .+.+|++++.+++.+....+..+..+ .++.++..|+.+...-. .+      -++
T Consensus         7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK12939          7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAALGG   84 (250)
T ss_pred             CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            678887776 556788887654  46789999998877665555444433 36888889987643100 00      036


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|.|+.++
T Consensus        85 id~vi~~a   92 (250)
T PRK12939         85 LDGLVNNA   92 (250)
T ss_pred             CCEEEECC
Confidence            89999873

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=85.25  E-value=9.1  Score=31.78  Aligned_cols=95  Identities=17%  Similarity=0.135  Sum_probs=60.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC-CCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~-~~~~~~~fD~V~sn~  200 (289)
                      +.+|+-|||=|-...+.- ...+..+++..|.+..-        ...+- + .|+.-|...... +..+.++||+|++..
T Consensus        26 ~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF--------~~~~~-~-~F~fyD~~~p~~~~~~l~~~~d~vv~DP   94 (162)
T PF10237_consen   26 DTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRF--------EQFGG-D-EFVFYDYNEPEELPEELKGKFDVVVIDP   94 (162)
T ss_pred             CCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchH--------HhcCC-c-ceEECCCCChhhhhhhcCCCceEEEECC
Confidence            579999999665543332 12367899999998743        22332 2 355555554211 112357999999985


Q ss_pred             c----ccHHHHHHHHccccccCeEEEEEEcC
Q 022962          201 V----AEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       201 ~----~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      .    +-+....+.+.-++++++.+++..|.
T Consensus        95 PFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~  125 (162)
T PF10237_consen   95 PFLSEECLTKTAETIRLLLKPGGKIILCTGE  125 (162)
T ss_pred             CCCCHHHHHHHHHHHHHHhCccceEEEecHH
Confidence            2    22345566667777889999987774

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK06701 short chain dehydrogenase; Provisional

Probab=85.07  E-value=4.9  Score=36.13  Aligned_cols=102  Identities=12%  Similarity=0.129  Sum_probs=60.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChH-HHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNK-RCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~-~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~  191 (289)
                      +.++|=.|+++| +|..++..+  .+.+|+.++.+.. ..+......+..+. ++.++..|+.+...-. .+      -.
T Consensus        46 ~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~i~~~~~  123 (290)
T PRK06701         46 GKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSDEAFCKDAVEETVRELG  123 (290)
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            678999997555 577777653  4689999988753 23333333333332 5778888886532110 00      13


Q ss_pred             CceEEEEcCc------------------------ccHHHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV------------------------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~------------------------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..|+|+.++-                        ...-.+++.+.+.++++|.+++..
T Consensus       124 ~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is  181 (290)
T PRK06701        124 RLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG  181 (290)
T ss_pred             CCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            5799987731                        012344455566667788888654

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=85.05  E-value=27  Score=34.32  Aligned_cols=104  Identities=13%  Similarity=0.019  Sum_probs=65.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC----CCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCCcCCCCce
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC----PDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYD  194 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~----p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~~~~~~fD  194 (289)
                      ++..|.|..||||...+......    ....++|-|....+...+..|..-.+..  +....++|-..-+.. ....+||
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~-~~~~~~D  295 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEW-ENENGFE  295 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccc-cccccCC
Confidence            45789999999998766543322    1256999999999999999886555442  233333332221100 0124699


Q ss_pred             EEEEcCc----------c-------------------cHHHHHHHHccccccCeEEEEEE
Q 022962          195 VAVARAV----------A-------------------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       195 ~V~sn~~----------~-------------------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .|++|..          +                   .=..++..+...|++||+..+..
T Consensus       296 ~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~  355 (501)
T TIGR00497       296 VVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC  355 (501)
T ss_pred             EEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence            9999830          0                   00245556777899999866554

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=84.85  E-value=2.7  Score=38.39  Aligned_cols=95  Identities=17%  Similarity=0.159  Sum_probs=56.0

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc---ccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---AETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d---~~~~~~~~~~~~~fD~V  196 (289)
                      ++.+||-.|+|+ |...+.+|+......|++++.+++..+.++    ..+...  ++..+   ..++... .....+|+|
T Consensus       159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~----~~g~~~--~~~~~~~~~~~~~~~-~~~~~~d~v  231 (343)
T cd08236         159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR----ELGADD--TINPKEEDVEKVREL-TEGRGADLV  231 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCCE--EecCccccHHHHHHH-hCCCCCCEE
Confidence            477899998755 555566676654334999998887766553    344422  22111   1111100 012359999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +...-.  ...+..+.+.|+++|+++..
T Consensus       232 ld~~g~--~~~~~~~~~~l~~~G~~v~~  257 (343)
T cd08236         232 IEAAGS--PATIEQALALARPGGKVVLV  257 (343)
T ss_pred             EECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence            965322  34566778889999998764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=84.79  E-value=1.7  Score=40.85  Aligned_cols=66  Identities=18%  Similarity=0.153  Sum_probs=57.1

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccccc
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL  183 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~  183 (289)
                      +..+|.+|+|.+|-.|.-+.-+|... +..++.|.|.+.+..+..+...+..|..+++...+|....
T Consensus       210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t  276 (413)
T KOG2360|consen  210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT  276 (413)
T ss_pred             CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence            34568999999999999998888654 4789999999999999999999999988888888888774

>PRK07454 short chain dehydrogenase; Provisional

Probab=84.78  E-value=6.8  Score=33.69  Aligned_cols=78  Identities=15%  Similarity=0.096  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------RE  191 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~  191 (289)
                      +..++|=.|+ +|.+|..+++.+  .+.+|++++.+++......+..+..+ .++.++.+|+.+...-. ..      -+
T Consensus         5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (241)
T PRK07454          5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFG   82 (241)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3568899995 666788877654  46799999999876655555444433 25888889987643100 00      13


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      +.|.++.++
T Consensus        83 ~id~lv~~a   91 (241)
T PRK07454         83 CPDVLINNA   91 (241)
T ss_pred             CCCEEEECC
Confidence            579999874

>PRK07904 short chain dehydrogenase; Provisional

Probab=84.45  E-value=5.8  Score=34.80  Aligned_cols=78  Identities=14%  Similarity=0.110  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC---CCCEEEEEeCChHH-HHHHHHHHHHcCCCCEEEEeccccccCCC-----CcC-C
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKR-CVFLEHAVSLTQLLNVQIVRGRAETLGKD-----VSF-R  190 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~---p~~~V~~iD~s~~~-l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-----~~~-~  190 (289)
                      ++.+||=.|+++| +|..+|+.+   .+.+|++++.++.. ++.+.+..+..+..+++++..|+.+...-     ... .
T Consensus         7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~   85 (253)
T PRK07904          7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG   85 (253)
T ss_pred             CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence            4678999999655 688888653   24799999998764 55555555555544688999998764310     000 1


Q ss_pred             CCceEEEEc
Q 022962          191 EQYDVAVAR  199 (289)
Q Consensus       191 ~~fD~V~sn  199 (289)
                      +..|+++.+
T Consensus        86 g~id~li~~   94 (253)
T PRK07904         86 GDVDVAIVA   94 (253)
T ss_pred             CCCCEEEEe
Confidence            468988876

>PRK09291 short chain dehydrogenase; Provisional

Probab=84.03  E-value=4.3  Score=35.25  Aligned_cols=76  Identities=14%  Similarity=0.118  Sum_probs=50.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEEEc
Q 022962          123 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVAR  199 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~sn  199 (289)
                      .+||=.|+++| +|..+++.+  .+.+|++++.++......+......+. ++.++.+|+.+...-. ......|.|+.|
T Consensus         3 ~~vlVtGasg~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          3 KTILITGAGSG-FGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            47888888554 577776543  468999999988766655555555443 5888888887642110 112478999987


Q ss_pred             C
Q 022962          200 A  200 (289)
Q Consensus       200 ~  200 (289)
                      +
T Consensus        81 a   81 (257)
T PRK09291         81 A   81 (257)
T ss_pred             C
Confidence            4

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=84.00  E-value=6.4  Score=36.90  Aligned_cols=97  Identities=19%  Similarity=0.047  Sum_probs=55.2

Q ss_pred             CCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec----cc-cccCCCCcCCC
Q 022962          120 NSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG----RA-ETLGKDVSFRE  191 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~----d~-~~~~~~~~~~~  191 (289)
                      +.+.+||=.|+  |.+|..   +|+..+..+|++++.+++..+.++    ++|.+.+--.+.    +. ..+... ....
T Consensus       202 ~~g~~VlV~g~--g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~~~~v~~~-~~g~  274 (384)
T cd08265         202 RPGAYVVVYGA--GPIGLAAIALAKAAGASKVIAFEISEERRNLAK----EMGADYVFNPTKMRDCLSGEKVMEV-TKGW  274 (384)
T ss_pred             CCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCCEEEcccccccccHHHHHHHh-cCCC
Confidence            34777877765  555554   455554338999999887655444    456532211111    11 001000 1124


Q ss_pred             CceEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          192 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       192 ~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .+|+|+.. .......+..+.+.|+++|+++..
T Consensus       275 gvDvvld~-~g~~~~~~~~~~~~l~~~G~~v~~  306 (384)
T cd08265         275 GADIQVEA-AGAPPATIPQMEKSIAINGKIVYI  306 (384)
T ss_pred             CCCEEEEC-CCCcHHHHHHHHHHHHcCCEEEEE
Confidence            69999865 333345677778889999999864

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.90  E-value=0.59  Score=38.56  Aligned_cols=36  Identities=22%  Similarity=0.222  Sum_probs=29.2

Q ss_pred             CCCceEEEEcC------cccHHHHHHHHccccccCeEEEEEE
Q 022962          190 REQYDVAVARA------VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       190 ~~~fD~V~sn~------~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +++.|+|.+..      .+.-..++++|+++|||||++-+..
T Consensus        45 dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv   86 (185)
T COG4627          45 DNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV   86 (185)
T ss_pred             CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence            47899998874      3455788999999999999998754

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=83.71  E-value=5.3  Score=34.51  Aligned_cols=75  Identities=15%  Similarity=0.040  Sum_probs=48.8

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC-------CCCcCCCCce
Q 022962          124 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG-------KDVSFREQYD  194 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~-------~~~~~~~~fD  194 (289)
                      ++|=.| |+|.+|..+++.+  .+.+|++++.++...+.+....+..+ .++.++.+|+.+..       .-...-...|
T Consensus         3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   80 (255)
T TIGR01963         3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKEDEIADMIAAAAAEFGGLD   80 (255)
T ss_pred             EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            566667 5567788887653  46799999999876665555444444 25888888887643       1000013579


Q ss_pred             EEEEcC
Q 022962          195 VAVARA  200 (289)
Q Consensus       195 ~V~sn~  200 (289)
                      .|+.++
T Consensus        81 ~vi~~a   86 (255)
T TIGR01963        81 ILVNNA   86 (255)
T ss_pred             EEEECC
Confidence            999874

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK07326 short chain dehydrogenase; Provisional

Probab=83.64  E-value=5.7  Score=33.96  Aligned_cols=75  Identities=16%  Similarity=0.044  Sum_probs=48.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~~  192 (289)
                      +.+||=.|. +|.+|..+++.+  .+.+|++++.++.....+.......  .++.++.+|+.+...-. ..      -+.
T Consensus         6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (237)
T PRK07326          6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFGG   82 (237)
T ss_pred             CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            578999995 667788887653  3679999999887665544433322  35888888877542100 00      136


Q ss_pred             ceEEEEc
Q 022962          193 YDVAVAR  199 (289)
Q Consensus       193 fD~V~sn  199 (289)
                      +|.|+.+
T Consensus        83 ~d~vi~~   89 (237)
T PRK07326         83 LDVLIAN   89 (237)
T ss_pred             CCEEEEC
Confidence            8999976

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=83.62  E-value=29  Score=31.01  Aligned_cols=130  Identities=14%  Similarity=0.118  Sum_probs=91.0

Q ss_pred             EEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC-CCCcCCCCceEEEEcC----
Q 022962          126 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG-KDVSFREQYDVAVARA----  200 (289)
Q Consensus       126 LDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~-~~~~~~~~fD~V~sn~----  200 (289)
                      |+.=|||=.++-.+.  .+.-++.++|+-++-...++.+..  +-.++++.++|-.... ......+.=-+|+...    
T Consensus        93 l~~YpGSP~lA~~ll--R~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~  168 (279)
T COG2961          93 LRYYPGSPLLARQLL--REQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFEL  168 (279)
T ss_pred             cccCCCCHHHHHHHc--chhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccc
Confidence            788888877655554  346799999999998888888766  3347999988865421 1101124567788773    


Q ss_pred             cccHHHHHHHHccccc--cCeEEEEEEcCCcHHHHHHHHHHHHHhCC-eEeEEeeeecCCCC
Q 022962          201 VAEMRILAEYCLPLVR--VGGLFVAAKGHDPQEEVKNSERAVQLMGA-SLLQLCSVESQSPF  259 (289)
Q Consensus       201 ~~~~~~ll~~~~~~Lk--pgG~l~~~~g~~~~~ei~~~~~~l~~~g~-~~~~~~~~~~~~~~  259 (289)
                      -.++..+++.+...++  ++|...+..+....+++..+.+.++..|. ++..+.--..|+.+
T Consensus       169 ~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~kiL~iEL~VrP~~d  230 (279)
T COG2961         169 KDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIRKILQIELAVRPDSD  230 (279)
T ss_pred             ccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCccceeeeEEEecCCCC
Confidence            2367777776666666  68888888888888999999999999998 56555543445443

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=83.52  E-value=3.3  Score=39.28  Aligned_cols=45  Identities=16%  Similarity=0.254  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHH
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAV  165 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~  165 (289)
                      +.++++||-|.+ +|+.++.+....| .+|++||+|+.....++-..
T Consensus        33 i~~~d~vl~ItS-aG~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKl   77 (380)
T PF11899_consen   33 IGPDDRVLTITS-AGCNALDYLLAGP-KRIHAVDLNPAQNALLELKL   77 (380)
T ss_pred             CCCCCeEEEEcc-CCchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHH
Confidence            445889999965 5666777765555 69999999998877766543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=83.45  E-value=9.8  Score=37.39  Aligned_cols=116  Identities=10%  Similarity=0.063  Sum_probs=68.7

Q ss_pred             CCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC--cccHHH
Q 022962          131 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--VAEMRI  206 (289)
Q Consensus       131 G~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--~~~~~~  206 (289)
                      |.|..|..+|...  .+.+|+..|.+++..+...+.....|..++ ....++.++....   +..|+|++.-  -...+.
T Consensus        13 GLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~-~~a~s~~e~v~~l---~~~dvIi~~v~~~~aV~~   88 (493)
T PLN02350         13 GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPL-YGFKDPEDFVLSI---QKPRSVIILVKAGAPVDQ   88 (493)
T ss_pred             eeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCccc-ccCCCHHHHHhcC---CCCCEEEEECCCcHHHHH
Confidence            4456666666542  468999999998887655442222232222 1233444443210   2479888762  334566


Q ss_pred             HHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          207 LAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       207 ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      ++..+...|++|-. ++-.+....++..+..+.++..|...++..
T Consensus        89 Vi~gl~~~l~~G~i-iID~sT~~~~~t~~~~~~l~~~Gi~fldap  132 (493)
T PLN02350         89 TIKALSEYMEPGDC-IIDGGNEWYENTERRIKEAAEKGLLYLGMG  132 (493)
T ss_pred             HHHHHHhhcCCCCE-EEECCCCCHHHHHHHHHHHHHcCCeEEeCC
Confidence            66777777877654 455555555566666777888888766553

>PRK08339 short chain dehydrogenase; Provisional

Probab=83.39  E-value=6.7  Score=34.60  Aligned_cols=78  Identities=10%  Similarity=0.041  Sum_probs=52.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C-----CCCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F-----REQY  193 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~-----~~~f  193 (289)
                      +.++|=.|+++|+ |..+|+.+  .+.+|+.+|.+...++.+.+..+...-.++.++..|+.+...-.. .     -+..
T Consensus         8 ~k~~lItGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i   86 (263)
T PRK08339          8 GKLAFTTASSKGI-GFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP   86 (263)
T ss_pred             CCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence            6788989988774 77777653  468999999998877666555443322368888888876421100 0     1468


Q ss_pred             eEEEEcC
Q 022962          194 DVAVARA  200 (289)
Q Consensus       194 D~V~sn~  200 (289)
                      |+++.|+
T Consensus        87 D~lv~na   93 (263)
T PRK08339         87 DIFFFST   93 (263)
T ss_pred             cEEEECC
Confidence            9998874

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=83.38  E-value=3.6  Score=37.40  Aligned_cols=78  Identities=9%  Similarity=0.026  Sum_probs=47.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +.+||=.| |+|.+|..++..+  .+.+|++++.+..............+. .+++++.+|+.+...-...-...|.|+.
T Consensus         5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   83 (325)
T PLN02989          5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH   83 (325)
T ss_pred             CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence            67899988 5788898888653  457888887666543322221111122 3688899998775321111125799887


Q ss_pred             cC
Q 022962          199 RA  200 (289)
Q Consensus       199 n~  200 (289)
                      ++
T Consensus        84 ~A   85 (325)
T PLN02989         84 TA   85 (325)
T ss_pred             eC
Confidence            74

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=83.19  E-value=8.1  Score=35.28  Aligned_cols=103  Identities=17%  Similarity=0.111  Sum_probs=59.3

Q ss_pred             CeEEEEcCCC--ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-----CEEEEeccccccCCCCcCCCCceE
Q 022962          123 LKLVDVGTGA--GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-----NVQIVRGRAETLGKDVSFREQYDV  195 (289)
Q Consensus       123 ~~VLDiGcG~--G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-----ni~~~~~d~~~~~~~~~~~~~fD~  195 (289)
                      .+|+=+|+|.  |.++-.|++.  +..|+.++.+++.++..++   +.|+.     ....+.....+  .  ...+.||+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~~--~--~~~~~~D~   73 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAET--A--DAAEPIHR   73 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCCC--c--ccccccCE
Confidence            4688888883  4455555543  5689999998765554443   12221     10111100100  0  11257999


Q ss_pred             EEEcCc-ccHHHHHHHHccccccCeEEEEEE-cCCcHHHHH
Q 022962          196 AVARAV-AEMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVK  234 (289)
Q Consensus       196 V~sn~~-~~~~~ll~~~~~~LkpgG~l~~~~-g~~~~~ei~  234 (289)
                      |+...- -+....++.+...+.++..++... |-...+.+.
T Consensus        74 viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~  114 (305)
T PRK05708         74 LLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVA  114 (305)
T ss_pred             EEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH
Confidence            886532 246778888999999999887665 444444443

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=83.09  E-value=9.9  Score=34.70  Aligned_cols=113  Identities=19%  Similarity=0.155  Sum_probs=67.0

Q ss_pred             CCeEEEEcCCCChHHH---HHHHHCCC-CEEEEE-eCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGL---VLAIACPD-WKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l---~la~~~p~-~~V~~i-D~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ..+|.=|||| |+.+.   ......++ ..++++ |++++.   +++.++..+..   -...|.+++-..    ...|+|
T Consensus         3 ~irvgiiG~G-~~~~~~~~~~~~~~~~~~~~vav~d~~~~~---a~~~a~~~~~~---~~~~~~~~ll~~----~~iD~V   71 (342)
T COG0673           3 MIRVGIIGAG-GIAGKAHLPALAALGGGLELVAVVDRDPER---AEAFAEEFGIA---KAYTDLEELLAD----PDIDAV   71 (342)
T ss_pred             eeEEEEEccc-HHHHHHhHHHHHhCCCceEEEEEecCCHHH---HHHHHHHcCCC---cccCCHHHHhcC----CCCCEE
Confidence            3578889999 22222   12223344 366665 998876   56666677754   334567766432    458998


Q ss_pred             EEcCc-ccHHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHhCCeEe
Q 022962          197 VARAV-AEMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGASLL  248 (289)
Q Consensus       197 ~sn~~-~~~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~g~~~~  248 (289)
                      +.... .....+.   ...|+-|=.++++++- ...+|.+++.++.++.|..+.
T Consensus        72 ~Iatp~~~H~e~~---~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~  122 (342)
T COG0673          72 YIATPNALHAELA---LAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLM  122 (342)
T ss_pred             EEcCCChhhHHHH---HHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence            86532 2222333   3456667788888863 456677777777777765544

>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component

Probab=82.83  E-value=4.2  Score=30.53  Aligned_cols=55  Identities=18%  Similarity=0.260  Sum_probs=37.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      .+|| +.||+|.-+-.++..                  .++.+++.|+ ++++.+.++.++...   ...||+|+..+
T Consensus         4 ~~IL-l~C~~G~sSS~l~~k------------------~~~~~~~~gi-~~~v~a~~~~~~~~~---~~~~Dvill~p   58 (95)
T TIGR00853         4 TNIL-LLCAAGMSTSLLVNK------------------MNKAAEEYGV-PVKIAAGSYGAAGEK---LDDADVVLLAP   58 (95)
T ss_pred             cEEE-EECCCchhHHHHHHH------------------HHHHHHHCCC-cEEEEEecHHHHHhh---cCCCCEEEECc
Confidence            4666 789999765544432                  4666777787 488888887766432   24689998874

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.

>PRK05866 short chain dehydrogenase; Provisional

Probab=82.68  E-value=4  Score=36.85  Aligned_cols=77  Identities=12%  Similarity=0.035  Sum_probs=51.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-------CCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-------~~~~  192 (289)
                      +.+||=.|+++| +|..+++.+  .+.+|++++.+++.++.+.+.....+. ++.++..|+.+...-..       .-+.
T Consensus        40 ~k~vlItGasgg-IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  117 (293)
T PRK05866         40 GKRILLTGASSG-IGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRIGG  117 (293)
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            578998897655 577777643  468999999998877666555544443 47788888876421000       0136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.++
T Consensus       118 id~li~~A  125 (293)
T PRK05866        118 VDILINNA  125 (293)
T ss_pred             CCEEEECC
Confidence            89999884

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.66  E-value=18  Score=32.54  Aligned_cols=92  Identities=15%  Similarity=0.147  Sum_probs=55.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc-------CC----------CCEEEEeccccccCC
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------QL----------LNVQIVRGRAETLGK  185 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-------~l----------~ni~~~~~d~~~~~~  185 (289)
                      .+|.=||+|+=..++.......+.+|+.+|.+++.++.+.+...++       +.          .++++. .+.+.+  
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~--   81 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL--   81 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh--
Confidence            3577777764433333322334679999999999888765433221       21          234432 333322  


Q ss_pred             CCcCCCCceEEEEcCcc---cHHHHHHHHccccccCeEEE
Q 022962          186 DVSFREQYDVAVARAVA---EMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       186 ~~~~~~~fD~V~sn~~~---~~~~ll~~~~~~LkpgG~l~  222 (289)
                           ...|+|+..-..   -...+++.+...++++..++
T Consensus        82 -----~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~  116 (292)
T PRK07530         82 -----ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA  116 (292)
T ss_pred             -----cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence                 357998876433   24577788888898887765

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=82.64  E-value=9.3  Score=36.29  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=24.3

Q ss_pred             CCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHH
Q 022962          131 GAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEH  163 (289)
Q Consensus       131 G~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~  163 (289)
                      |.|..|+.+|..+ .+.+|+++|++++.++.+++
T Consensus         7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~   40 (388)
T PRK15057          7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND   40 (388)
T ss_pred             CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence            5566666666432 25789999999999887765

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=82.50  E-value=10  Score=33.73  Aligned_cols=113  Identities=12%  Similarity=0.112  Sum_probs=70.6

Q ss_pred             CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC-CCcCCCCceEEEEcC----cccHHH
Q 022962          132 AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVAVARA----VAEMRI  206 (289)
Q Consensus       132 ~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~-~~~~~~~fD~V~sn~----~~~~~~  206 (289)
                      .|.+.+......+.-+.+++|+.+.-.+.++++....  .++++++.|..+.-. .....+.=-+|+...    ..++..
T Consensus        66 PGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~~dy~~  143 (245)
T PF04378_consen   66 PGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD--RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQKDDYQR  143 (245)
T ss_dssp             E-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT--S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----STTHHHH
T ss_pred             CCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC--CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCchHHHH
Confidence            4555555554556789999999999998888776542  379999999876210 000124567888874    346777


Q ss_pred             HHHHHccccc--cCeEEEEEEcCCcHHHHHHHHHHHHHhCCe
Q 022962          207 LAEYCLPLVR--VGGLFVAAKGHDPQEEVKNSERAVQLMGAS  246 (289)
Q Consensus       207 ll~~~~~~Lk--pgG~l~~~~g~~~~~ei~~~~~~l~~~g~~  246 (289)
                      +++.+...+|  +.|.+++..+-....+...+.+.++..|..
T Consensus       144 v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~  185 (245)
T PF04378_consen  144 VVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIK  185 (245)
T ss_dssp             HHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCC
Confidence            7777777777  789988888877777788888888887754

; PDB: 2OO3_A.

>PRK06139 short chain dehydrogenase; Provisional

Probab=82.50  E-value=4.2  Score=37.58  Aligned_cols=77  Identities=18%  Similarity=0.127  Sum_probs=53.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~  192 (289)
                      +.+||=.|+++| +|..+++.+  .+.+|+.++.+++.++...+.++..+. ++.++..|+.+...-.       ...+.
T Consensus         7 ~k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          7 GAVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            568888888655 577777643  468999999999888777776666554 5777788886532100       01146


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      +|+++.|+
T Consensus        85 iD~lVnnA   92 (330)
T PRK06139         85 IDVWVNNV   92 (330)
T ss_pred             CCEEEECC
Confidence            89999884

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=82.47  E-value=6.3  Score=36.02  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=54.8

Q ss_pred             CCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEecccc-ccCCCCcCCCCce
Q 022962          120 NSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAE-TLGKDVSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~-~~~~~~~~~~~fD  194 (289)
                      .++.+||=.|+  |.++..   +|+..+..+|+++|.++...+.+++    +|.+. +.....+.. .+... .....+|
T Consensus       165 ~~g~~vlI~g~--g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~-~~~~~~d  237 (345)
T cd08286         165 KPGDTVAIVGA--GPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLEL-TDGRGVD  237 (345)
T ss_pred             CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHH-hCCCCCC
Confidence            34677776665  555544   5555544789999999877666553    45432 221111111 01000 0124699


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+... .. ...++.+.+.|+++|+++..
T Consensus       238 ~vld~~-g~-~~~~~~~~~~l~~~g~~v~~  265 (345)
T cd08286         238 VVIEAV-GI-PATFELCQELVAPGGHIANV  265 (345)
T ss_pred             EEEECC-CC-HHHHHHHHHhccCCcEEEEe
Confidence            998543 22 33567777899999998754

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=82.46  E-value=7.3  Score=37.39  Aligned_cols=84  Identities=12%  Similarity=0.045  Sum_probs=52.9

Q ss_pred             CCCeEEEEcCCCChHHHHH---HHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVL---AIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~l---a~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      .+.+|+=+|+|.  +|+..   ++.. +++|+.+|.++..++.|+.    .|..   .+  +.++..      ..+|+|+
T Consensus       201 ~GktVvViG~G~--IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----~G~~---~~--~~~e~v------~~aDVVI  262 (413)
T cd00401         201 AGKVAVVAGYGD--VGKGCAQSLRGQ-GARVIVTEVDPICALQAAM----EGYE---VM--TMEEAV------KEGDIFV  262 (413)
T ss_pred             CCCEEEEECCCH--HHHHHHHHHHHC-CCEEEEEECChhhHHHHHh----cCCE---Ec--cHHHHH------cCCCEEE
Confidence            488999999985  34443   3333 5699999999987666654    4542   21  122211      3479998


Q ss_pred             EcCcccHHHHHH-HHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAE-YCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~-~~~~~LkpgG~l~~~  224 (289)
                      ... .. ..++. ...+.+|+||.++..
T Consensus       263 ~at-G~-~~~i~~~~l~~mk~Ggilvnv  288 (413)
T cd00401         263 TTT-GN-KDIITGEHFEQMKDGAIVCNI  288 (413)
T ss_pred             ECC-CC-HHHHHHHHHhcCCCCcEEEEe
Confidence            643 22 23444 447899999998754

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06949 short chain dehydrogenase; Provisional

Probab=82.25  E-value=8.3  Score=33.42  Aligned_cols=77  Identities=14%  Similarity=0.023  Sum_probs=51.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~  192 (289)
                      +.+||=.| |+|.+|..+++.+  .+.+|++++.+++.++.+....+..+. ++.++..|+.+...-.       ...+.
T Consensus         9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06949          9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAGT   86 (258)
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            67899999 5566788887654  467999999998877666555444332 5778888876532100       00135


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|.|+.++
T Consensus        87 ~d~li~~a   94 (258)
T PRK06949         87 IDILVNNS   94 (258)
T ss_pred             CCEEEECC
Confidence            79999874

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=82.10  E-value=11  Score=34.94  Aligned_cols=95  Identities=13%  Similarity=0.048  Sum_probs=55.1

Q ss_pred             CCCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc----ccc-cCCCCcCC
Q 022962          119 CNSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR----AET-LGKDVSFR  190 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d----~~~-~~~~~~~~  190 (289)
                      ++++.+||=.|+  |.+|+.   +|+.....+|+++|.+++.++.+++    +|.+.+ +-..+    +.+ +..  ...
T Consensus       184 ~~~g~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~~~~v~~--~~~  254 (368)
T cd08300         184 VEPGSTVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDC-VNPKDHDKPIQQVLVE--MTD  254 (368)
T ss_pred             CCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEE-EcccccchHHHHHHHH--HhC
Confidence            345888998886  445544   4555543379999999988776643    565322 11111    111 100  011


Q ss_pred             CCceEEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962          191 EQYDVAVARAVAEMRILAEYCLPLVRVG-GLFVAA  224 (289)
Q Consensus       191 ~~fD~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~  224 (289)
                      +.+|+|+-..-.  ...+..+.+.|+++ |+++..
T Consensus       255 ~g~d~vid~~g~--~~~~~~a~~~l~~~~G~~v~~  287 (368)
T cd08300         255 GGVDYTFECIGN--VKVMRAALEACHKGWGTSVII  287 (368)
T ss_pred             CCCcEEEECCCC--hHHHHHHHHhhccCCCeEEEE
Confidence            368998854221  23556667788887 998864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=82.06  E-value=12  Score=33.94  Aligned_cols=107  Identities=14%  Similarity=0.086  Sum_probs=61.2

Q ss_pred             CCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-Ccc-cHHH
Q 022962          131 GAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-AVA-EMRI  206 (289)
Q Consensus       131 G~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn-~~~-~~~~  206 (289)
                      |.|..|..+|..  ..+.+|+..|.+++.++.++    ..|   +.. ..+.+++...   ....|+|+.. ... ..+.
T Consensus         7 GlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~----~~g---~~~-~~s~~~~~~~---~~~advVi~~vp~~~~~~~   75 (299)
T PRK12490          7 GLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG----KLG---ITA-RHSLEELVSK---LEAPRTIWVMVPAGEVTES   75 (299)
T ss_pred             cccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCC---Cee-cCCHHHHHHh---CCCCCEEEEEecCchHHHH
Confidence            455677666654  24578999999987765543    233   222 2334333211   0125777754 332 5677


Q ss_pred             HHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeE
Q 022962          207 LAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       207 ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                      +++.+...+++|-.++ ..+........++.+.+...|...++
T Consensus        76 v~~~i~~~l~~g~ivi-d~st~~~~~~~~~~~~~~~~g~~~vd  117 (299)
T PRK12490         76 VIKDLYPLLSPGDIVV-DGGNSRYKDDLRRAEELAERGIHYVD  117 (299)
T ss_pred             HHHHHhccCCCCCEEE-ECCCCCchhHHHHHHHHHHcCCeEEe
Confidence            7788777887776554 34333344455556667777865544

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]

Probab=82.06  E-value=1.3  Score=42.80  Aligned_cols=76  Identities=17%  Similarity=0.233  Sum_probs=46.8

Q ss_pred             CCeEEEEcCCC-ChHHHH-HHHHCCCCEEEEEeCCh-------------------HHHHHHHHHHHHcCC-CCEEEEecc
Q 022962          122 NLKLVDVGTGA-GLPGLV-LAIACPDWKVTLLESMN-------------------KRCVFLEHAVSLTQL-LNVQIVRGR  179 (289)
Q Consensus       122 ~~~VLDiGcG~-G~~~l~-la~~~p~~~V~~iD~s~-------------------~~l~~a~~~~~~~~l-~ni~~~~~d  179 (289)
                      +.+||=||||. |+-.+- ||. -.-.+|+.||.+.                   .....|......+.- -++..+|++
T Consensus        12 ~~riLvVGaGGIGCELLKnLal-~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan   90 (603)
T KOG2013|consen   12 SGRILVVGAGGIGCELLKNLAL-TGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN   90 (603)
T ss_pred             cCeEEEEecCcccHHHHHHHHH-hcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence            78999999973 443222 222 2335777777542                   344455555555543 368889999


Q ss_pred             ccccCCCCcCCCCceEEEE
Q 022962          180 AETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       180 ~~~~~~~~~~~~~fD~V~s  198 (289)
                      +.+......|-++||+|+.
T Consensus        91 I~e~~fnv~ff~qfdiV~N  109 (603)
T KOG2013|consen   91 IKEPKFNVEFFRQFDIVLN  109 (603)
T ss_pred             ccCcchHHHHHHHHHHHHH
Confidence            9886444344467998764

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=82.02  E-value=7.1  Score=38.82  Aligned_cols=92  Identities=14%  Similarity=0.034  Sum_probs=54.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEEEc
Q 022962          123 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVAR  199 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~sn  199 (289)
                      .+|+=+  |.|..|..+++..  .+.+|+.||.|++.++.+++    .   +..++++|..+...-. ..-+++|.+++.
T Consensus       418 ~hiiI~--G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~---g~~~i~GD~~~~~~L~~a~i~~a~~viv~  488 (558)
T PRK10669        418 NHALLV--GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R---GIRAVLGNAANEEIMQLAHLDCARWLLLT  488 (558)
T ss_pred             CCEEEE--CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C---CCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence            355554  5557778888754  35789999999988776654    2   4678899988742110 011478877654


Q ss_pred             CcccH-H-HHHHHHccccccCeEEEEE
Q 022962          200 AVAEM-R-ILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ~~~~~-~-~ll~~~~~~LkpgG~l~~~  224 (289)
                      ...+. . .+... .+...|+..++.-
T Consensus       489 ~~~~~~~~~iv~~-~~~~~~~~~iiar  514 (558)
T PRK10669        489 IPNGYEAGEIVAS-AREKRPDIEIIAR  514 (558)
T ss_pred             cCChHHHHHHHHH-HHHHCCCCeEEEE
Confidence            22221 1 23333 3445677776653

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=81.84  E-value=12  Score=34.19  Aligned_cols=96  Identities=11%  Similarity=0.045  Sum_probs=57.8

Q ss_pred             CCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEE-Eec-cccc-cCCCCcCCCCce
Q 022962          120 NSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQI-VRG-RAET-LGKDVSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~-~~~-d~~~-~~~~~~~~~~fD  194 (289)
                      .++.+||=.|+  |.|..++.+|+.. +.+|++++.+++..+.+++.   +|.+.+-- -.. +..+ +..  ...+.+|
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~--~~~~gvd  223 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKR--YFPNGID  223 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHH--hCCCCcE
Confidence            35889998886  3444555567665 56899999988876666541   45543211 111 2111 111  0124689


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+-.. ..  ..+..+.+.|+++|+++..
T Consensus       224 ~v~d~~-g~--~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         224 IYFDNV-GG--KMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             EEEECC-CH--HHHHHHHHHhccCcEEEEe
Confidence            998543 22  4566778899999998864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=81.83  E-value=8.9  Score=33.29  Aligned_cols=77  Identities=10%  Similarity=-0.057  Sum_probs=51.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~  192 (289)
                      +.++|=.|++ |.+|..+++.+  .+.+|++++.+++.++.+.+..+..+. ++.++..|+.+...-.       ..-++
T Consensus        11 ~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124         11 GQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            7789989965 55677777653  468999999998776655555555443 5788888887632100       00136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|.++.++
T Consensus        89 id~vi~~a   96 (256)
T PRK06124         89 LDILVNNV   96 (256)
T ss_pred             CCEEEECC
Confidence            79999873

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=81.50  E-value=9.1  Score=34.83  Aligned_cols=106  Identities=17%  Similarity=0.229  Sum_probs=66.2

Q ss_pred             CCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC--cccHHH
Q 022962          131 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--VAEMRI  206 (289)
Q Consensus       131 G~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--~~~~~~  206 (289)
                      |.|..|..+|...  .+..|+..|.++++.   .+.+...|..   ......+..       ...|+|++.-  -+..+.
T Consensus         7 GLG~MG~pmA~~L~~aG~~v~v~~r~~~ka---~~~~~~~Ga~---~a~s~~eaa-------~~aDvVitmv~~~~~V~~   73 (286)
T COG2084           7 GLGIMGSPMAANLLKAGHEVTVYNRTPEKA---AELLAAAGAT---VAASPAEAA-------AEADVVITMLPDDAAVRA   73 (286)
T ss_pred             cCchhhHHHHHHHHHCCCEEEEEeCChhhh---hHHHHHcCCc---ccCCHHHHH-------HhCCEEEEecCCHHHHHH
Confidence            5567778887653  468999999998762   2233334432   222222211       4579999863  334555


Q ss_pred             HH---HHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          207 LA---EYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       207 ll---~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                      ++   ..+...++||..++-+ .....+..+++.+.++..|+..++-
T Consensus        74 V~~g~~g~~~~~~~G~i~IDm-STisp~~a~~~a~~~~~~G~~~lDA  119 (286)
T COG2084          74 VLFGENGLLEGLKPGAIVIDM-STISPETARELAAALAAKGLEFLDA  119 (286)
T ss_pred             HHhCccchhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHhcCCcEEec
Confidence            55   3466677888887654 3445566677778888999877655

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=81.14  E-value=9.4  Score=33.25  Aligned_cols=77  Identities=14%  Similarity=0.048  Sum_probs=52.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~  192 (289)
                      +.++|=.| |+|.+|..+++.+  .+.+|+.++.+...++.+....+..+. ++.++.+|+.+...-.       ...+.
T Consensus        12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~~   89 (259)
T PRK08213         12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFGH   89 (259)
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            67899899 5677788888653  467999999998777666655554432 5778888887642110       00136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|.|+.++
T Consensus        90 id~vi~~a   97 (259)
T PRK08213         90 VDILVNNA   97 (259)
T ss_pred             CCEEEECC
Confidence            89999874

>PRK07985 oxidoreductase; Provisional

Probab=80.98  E-value=17  Score=32.63  Aligned_cols=102  Identities=15%  Similarity=0.111  Sum_probs=60.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCh--HHHHHHHHHHHHcCCCCEEEEeccccccCCC-------CcCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMN--KRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFR  190 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~--~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-------~~~~  190 (289)
                      +.++|-.|++.| +|..+|+.+  .+.+|+.++.+.  +..+.+.+..+..+. ++.++..|+.+...-       ...-
T Consensus        49 ~k~vlITGas~g-IG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~  126 (294)
T PRK07985         49 DRKALVTGGDSG-IGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGR-KAVLLPGDLSDEKFARSLVHEAHKAL  126 (294)
T ss_pred             CCEEEEECCCCc-HHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCC-eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            578999997554 677777653  467898887543  334444444444443 577788888763210       0001


Q ss_pred             CCceEEEEcCc-------------cc-----------HHHHHHHHccccccCeEEEEEE
Q 022962          191 EQYDVAVARAV-------------AE-----------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       191 ~~fD~V~sn~~-------------~~-----------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +..|.++.|+-             .+           .-.+++.+.+.++.+|.+++..
T Consensus       127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS  185 (294)
T PRK07985        127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS  185 (294)
T ss_pred             CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence            35799887731             01           1245556666677788887653

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=80.87  E-value=28  Score=31.20  Aligned_cols=102  Identities=17%  Similarity=0.148  Sum_probs=65.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCC----CEEEEEeCChHHHHHHHHHHHH--cCCCCEEEEeccccccCCCCcCCCCce
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPD----WKVTLLESMNKRCVFLEHAVSL--TQLLNVQIVRGRAETLGKDVSFREQYD  194 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~----~~V~~iD~s~~~l~~a~~~~~~--~~l~ni~~~~~d~~~~~~~~~~~~~fD  194 (289)
                      .+...+|+|+|+-.=+..|...+..    ...+.||+|+..+...-+.+..  .++ .|.-+++|.+..-.... ...--
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~~l~~~~~~~La~~~-~~~~R  155 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL-EVNALCGDYELALAELP-RGGRR  155 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC-eEeehhhhHHHHHhccc-CCCeE
Confidence            3678999999999877766555432    6899999999876654443322  233 36667777765221111 12222


Q ss_pred             EEEEc-------CcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVAR-------AVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn-------~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +++.-       ...+-..++.++...|+||-.|++-
T Consensus       156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence            22221       1235578999999999999998863

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=80.87  E-value=23  Score=32.13  Aligned_cols=86  Identities=15%  Similarity=0.064  Sum_probs=52.4

Q ss_pred             CeEEEEcCCCChHHHHHHH----HCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEe-ccccccCCCCcCCCCceEEE
Q 022962          123 LKLVDVGTGAGLPGLVLAI----ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~----~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~-~d~~~~~~~~~~~~~fD~V~  197 (289)
                      .+|+=+|.|  .+|-.+|+    ......|++.|.+...++.+.+    +|+.   ... .+.....     ....|+|+
T Consensus         4 ~~v~IvG~G--liG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~---d~~~~~~~~~~-----~~~aD~Vi   69 (279)
T COG0287           4 MKVGIVGLG--LMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVI---DELTVAGLAEA-----AAEADLVI   69 (279)
T ss_pred             cEEEEECCc--hHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCcc---cccccchhhhh-----cccCCEEE
Confidence            466677754  44544443    3344567899988766554433    3431   111 1110111     14579988


Q ss_pred             -EcCcccHHHHHHHHccccccCeEEE
Q 022962          198 -ARAVAEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       198 -sn~~~~~~~ll~~~~~~LkpgG~l~  222 (289)
                       |-++.....++++..+.|++|..+.
T Consensus        70 vavPi~~~~~~l~~l~~~l~~g~iv~   95 (279)
T COG0287          70 VAVPIEATEEVLKELAPHLKKGAIVT   95 (279)
T ss_pred             EeccHHHHHHHHHHhcccCCCCCEEE
Confidence             5578888999999999999988765

>cd05281 TDH Threonine dehydrogenase

Probab=80.76  E-value=7.9  Score=35.37  Aligned_cols=97  Identities=16%  Similarity=0.052  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+||-.|+|+ |..++.+|+.....+|++++.+++..+.+++    +|.+.+ .....+...+... ...+.+|+|+.
T Consensus       163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld  237 (341)
T cd05281         163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSV-TDGTGVDVVLE  237 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHH-cCCCCCCEEEE
Confidence            467888777643 4444556666543378899888776655543    454221 1111111111000 01246999997


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEE
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +...  ......+.+.|+++|+++..
T Consensus       238 ~~g~--~~~~~~~~~~l~~~G~~v~~  261 (341)
T cd05281         238 MSGN--PKAIEQGLKALTPGGRVSIL  261 (341)
T ss_pred             CCCC--HHHHHHHHHHhccCCEEEEE
Confidence            5322  23455666789999998764

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.66  E-value=10  Score=32.50  Aligned_cols=77  Identities=17%  Similarity=0.141  Sum_probs=50.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~~  192 (289)
                      +.++|=.|+ +|.+|..+++.+  .+.+|++++.++...+.........+ .++.++..|+.+...-. .+      -+.
T Consensus         7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (239)
T PRK07666          7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSDYEEVTAAIEQLKNELGS   84 (239)
T ss_pred             CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            567888995 677788887653  46799999999876655444444333 25888888886542100 00      135


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|.|+.++
T Consensus        85 id~vi~~a   92 (239)
T PRK07666         85 IDILINNA   92 (239)
T ss_pred             ccEEEEcC
Confidence            79999873

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=80.66  E-value=9.5  Score=33.13  Aligned_cols=77  Identities=13%  Similarity=0.007  Sum_probs=52.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~  192 (289)
                      +.+||=.|. +|.+|..+++.+  .+.+|++++.++..++.+.+.++..+. ++.++..|+.+...-.       ..-+.
T Consensus        10 ~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (255)
T PRK07523         10 GRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIGP   87 (255)
T ss_pred             CCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            678999995 666788887654  467999999998877666555554443 4777888887632100       00135


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|.|+.++
T Consensus        88 ~d~li~~a   95 (255)
T PRK07523         88 IDILVNNA   95 (255)
T ss_pred             CCEEEECC
Confidence            79999884

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=80.55  E-value=16  Score=33.10  Aligned_cols=111  Identities=14%  Similarity=0.046  Sum_probs=62.7

Q ss_pred             EEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-c
Q 022962          125 LVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-V  201 (289)
Q Consensus       125 VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-~  201 (289)
                      |-=||+|  ..|..+|..  ..+.+|+..|.+++.++.+.+    .|   +.. ..+..++...   -...|+|++.- .
T Consensus         3 Ig~IGlG--~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----~g---~~~-~~~~~e~~~~---~~~~dvvi~~v~~   69 (301)
T PRK09599          3 LGMIGLG--RMGGNMARRLLRGGHEVVGYDRNPEAVEALAE----EG---ATG-ADSLEELVAK---LPAPRVVWLMVPA   69 (301)
T ss_pred             EEEEccc--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CC---Cee-cCCHHHHHhh---cCCCCEEEEEecC
Confidence            4445554  555555543  245789999999987655432    33   222 2233333211   01247777652 2


Q ss_pred             c-cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeE
Q 022962          202 A-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       202 ~-~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                      . ..+.++..+...+++|..+ +..+....+....+.+.++..|...++
T Consensus        70 ~~~~~~v~~~l~~~l~~g~iv-id~st~~~~~~~~~~~~~~~~g~~~~d  117 (301)
T PRK09599         70 GEITDATIDELAPLLSPGDIV-IDGGNSYYKDDIRRAELLAEKGIHFVD  117 (301)
T ss_pred             CcHHHHHHHHHHhhCCCCCEE-EeCCCCChhHHHHHHHHHHHcCCEEEe
Confidence            2 4566777777788876544 444433444555566677788887665

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=80.54  E-value=13  Score=33.57  Aligned_cols=105  Identities=15%  Similarity=0.107  Sum_probs=61.6

Q ss_pred             CCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc--ccHHH
Q 022962          131 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV--AEMRI  206 (289)
Q Consensus       131 G~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~--~~~~~  206 (289)
                      |.|..|..+|...  .+.+|++.|.+++.++.+.+    .|.   .. ..+..+..      ...|+|+..-.  ...+.
T Consensus         3 GlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~----~g~---~~-~~s~~~~~------~~advVil~vp~~~~~~~   68 (288)
T TIGR01692         3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA----AGA---QA-AASPAEAA------EGADRVITMLPAGQHVIS   68 (288)
T ss_pred             cccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----cCC---ee-cCCHHHHH------hcCCEEEEeCCChHHHHH
Confidence            6667777776543  45699999999887665443    232   21 22322221      34688886532  33456


Q ss_pred             HH---HHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          207 LA---EYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       207 ll---~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                      ++   +.+...+++|-.+ +..+....+...++.+.+.+.|...++.
T Consensus        69 v~~g~~~l~~~~~~g~~v-id~st~~p~~~~~~~~~~~~~g~~~vda  114 (288)
T TIGR01692        69 VYSGDEGILPKVAKGSLL-IDCSTIDPDSARKLAELAAAHGAVFMDA  114 (288)
T ss_pred             HHcCcchHhhcCCCCCEE-EECCCCCHHHHHHHHHHHHHcCCcEEEC
Confidence            66   5566667666554 4444444455566667777788776554

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=80.37  E-value=9.4  Score=40.91  Aligned_cols=73  Identities=15%  Similarity=0.115  Sum_probs=40.1

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHCCCCE-------------EEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC
Q 022962          122 NLKLVDVGTGA-GLPGLVLAIACPDWK-------------VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV  187 (289)
Q Consensus       122 ~~~VLDiGcG~-G~~~l~la~~~p~~~-------------V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~  187 (289)
                      ..+|+=||||- |..........++.+             |+..|++.+..+   +.++..  .+++.+..|+.+...-.
T Consensus       569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~---~la~~~--~~~~~v~lDv~D~e~L~  643 (1042)
T PLN02819        569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAK---ETVEGI--ENAEAVQLDVSDSESLL  643 (1042)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHH---HHHHhc--CCCceEEeecCCHHHHH
Confidence            56899999862 433333222335544             888999976644   333332  24555555554432110


Q ss_pred             cCCCCceEEEEc
Q 022962          188 SFREQYDVAVAR  199 (289)
Q Consensus       188 ~~~~~fD~V~sn  199 (289)
                      ..-...|+|++-
T Consensus       644 ~~v~~~DaVIsa  655 (1042)
T PLN02819        644 KYVSQVDVVISL  655 (1042)
T ss_pred             HhhcCCCEEEEC
Confidence            110348999986

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=80.35  E-value=7.9  Score=35.34  Aligned_cols=96  Identities=20%  Similarity=0.126  Sum_probs=53.4

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccc-cCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTG-AGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAET-LGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG-~G~~~l~la~~~p~~~-V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~-~~~~~~~~~~fD~V  196 (289)
                      ++.+||-.|+| .|..++.+|+.. +.+ |++++.++...+.+++    ++.+.+ .....+..+ +... ...+.+|+|
T Consensus       161 ~g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~-~~~~~~d~v  234 (340)
T TIGR00692       161 SGKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADL-TDGEGVDVF  234 (340)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHh-cCCCCCCEE
Confidence            46778776654 233445566655 454 8899888876655543    454321 111111111 1000 012469999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +-....  ...+..+.+.|+++|+++..
T Consensus       235 ld~~g~--~~~~~~~~~~l~~~g~~v~~  260 (340)
T TIGR00692       235 LEMSGA--PKALEQGLQAVTPGGRVSLL  260 (340)
T ss_pred             EECCCC--HHHHHHHHHhhcCCCEEEEE
Confidence            975332  24566777889999998764

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=80.35  E-value=7  Score=35.68  Aligned_cols=97  Identities=13%  Similarity=0.165  Sum_probs=54.6

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEE-EEeccccc-cCCCCcCCCCceEEEE
Q 022962          122 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQ-IVRGRAET-LGKDVSFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~-~~~~d~~~-~~~~~~~~~~fD~V~s  198 (289)
                      +.+||=.|+|. |..++.+|+.....+|++++.+++..+.+++    +|.+.+- ....+..+ +.. ....+.+|+|+-
T Consensus       164 g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~-~~~~~~~d~v~d  238 (341)
T PRK05396        164 GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAE-LGMTEGFDVGLE  238 (341)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHH-hcCCCCCCEEEE
Confidence            67787777653 4444556666543378899988877666543    4543211 11111101 100 011246899986


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEEE
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ....  ...+..+.+.|+++|.++...
T Consensus       239 ~~g~--~~~~~~~~~~l~~~G~~v~~g  263 (341)
T PRK05396        239 MSGA--PSAFRQMLDNMNHGGRIAMLG  263 (341)
T ss_pred             CCCC--HHHHHHHHHHHhcCCEEEEEe
Confidence            4322  335666677899999998764

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=80.10  E-value=6.7  Score=37.94  Aligned_cols=98  Identities=16%  Similarity=0.138  Sum_probs=58.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-C--CCEEEEEeCChHHHHHHHHHHHH---cCC---CCEEEEeccccccCCCCcCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC-P--DWKVTLLESMNKRCVFLEHAVSL---TQL---LNVQIVRGRAETLGKDVSFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~-p--~~~V~~iD~s~~~l~~a~~~~~~---~~l---~ni~~~~~d~~~~~~~~~~~~~  192 (289)
                      ...+.|+|.|.|.- ..++... +  .-.++.||.+..|......+.+.   .|-   .++.+....+   +.  ...+.
T Consensus       201 pd~~~dfgsg~~~~-~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~---pi--~~~~~  274 (491)
T KOG2539|consen  201 PDLLRDFGSGAGNG-GWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRL---PI--DIKNG  274 (491)
T ss_pred             hHHHHHHHhhcccc-hhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccC---CC--Ccccc
Confidence            56788998887753 2333332 2  35799999999999988877655   111   1112222211   11  12356


Q ss_pred             ceEEEEcC--------cccHHHHHHHHccccccCeEEEEEE
Q 022962          193 YDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       193 fD~V~sn~--------~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ||+|++.-        +......-.-.....++||.+++..
T Consensus       275 yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe  315 (491)
T KOG2539|consen  275 YDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIE  315 (491)
T ss_pred             eeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEe
Confidence            99999862        2122333345566788899988765

>PRK05599 hypothetical protein; Provisional

Probab=80.07  E-value=8.3  Score=33.56  Aligned_cols=76  Identities=13%  Similarity=0.083  Sum_probs=51.3

Q ss_pred             eEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCCceE
Q 022962          124 KLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQYDV  195 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~fD~  195 (289)
                      ++|=.|+++|+ |..+|+.+ .+.+|+.++.+++.++.+.+.++..+-..+.++..|+.+...-.       ...+..|+
T Consensus         2 ~vlItGas~GI-G~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~   80 (246)
T PRK05599          2 SILILGGTSDI-AGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL   80 (246)
T ss_pred             eEEEEeCccHH-HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence            47777887764 77777643 46899999999888776666665555434778888887643210       01246899


Q ss_pred             EEEcC
Q 022962          196 AVARA  200 (289)
Q Consensus       196 V~sn~  200 (289)
                      ++.|+
T Consensus        81 lv~na   85 (246)
T PRK05599         81 AVVAF   85 (246)
T ss_pred             EEEec
Confidence            99873

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=80.03  E-value=22  Score=34.67  Aligned_cols=118  Identities=14%  Similarity=0.148  Sum_probs=68.4

Q ss_pred             EEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc--C
Q 022962          125 LVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR--A  200 (289)
Q Consensus       125 VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn--~  200 (289)
                      |-=||.|  ..|..+|..  ..+.+|++.|.+++.++...+.....|. ++. ...+++++....   ...|+|+..  +
T Consensus         4 IgvIGLG--~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~i~-~~~s~~e~v~~l---~~~d~Iil~v~~   76 (470)
T PTZ00142          4 IGLIGLA--VMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT-RVK-GYHTLEELVNSL---KKPRKVILLIKA   76 (470)
T ss_pred             EEEEeEh--HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC-cce-ecCCHHHHHhcC---CCCCEEEEEeCC
Confidence            4445555  344444433  3467999999999988777654333342 232 233444432210   235766654  3


Q ss_pred             cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          201 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       201 ~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                      ....+.+++.+...|++|-.+ +-.+.....+.....+.+...|...++.
T Consensus        77 ~~~v~~vi~~l~~~L~~g~iI-ID~gn~~~~dt~~r~~~l~~~Gi~flda  125 (470)
T PTZ00142         77 GEAVDETIDNLLPLLEKGDII-IDGGNEWYLNTERRIKRCEEKGILYLGM  125 (470)
T ss_pred             hHHHHHHHHHHHhhCCCCCEE-EECCCCCHHHHHHHHHHHHHcCCeEEcC
Confidence            445677888888888877554 4444444445455556777788776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	289
1xdz_A	240	Crystal Structure Of Gram_positive Bacillus Subtili		6e-44
3g88_A	249	T. Thermophilus 16s Rrna G527 Methyltransferase In		2e-24
1jsx_A	207	Crystal Structure Of The Escherichia Coli Glucose-I		9e-24

>pdb|1XDZ|A Chain A, Crystal Structure Of Gram_positive Bacillus Subtilis Glucose Inhibited Division Protein B (Gidb), Structural Genomics, Mcsg Length = 240

Iteration: 1
 Score =  174 bits (440), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 93/232 (40%), Positives = 127/232 (54%), Gaps = 10/232 (4%)
Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
           +L+ RQ EQ  LY D L++WN K+NLT++ +  EV  +H  DS+          T+    
Sbjct: 17  SLSPRQLEQFELYYDMLVEWNEKINLTSITEKKEVYLKHFYDSI----------TAAFYV 66
Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
             N    + DVG GAG P L + I  P   VT+++S+NKR  FLE      QL N     
Sbjct: 67  DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCH 126
Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
            RAET G+    RE YD+  ARAVA + +L+E CLPLV+  GLFVA K    +EE+   +
Sbjct: 127 DRAETFGQRKDVRESYDIVTARAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGK 186
Query: 238 RAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
           +A+  +G  L  + S +       R  +V  K + TPKKYPR PGTP K P+
Sbjct: 187 KAITTLGGELENIHSFKLPIEESDRNIMVIRKIKNTPKKYPRKPGTPNKSPI 238

>pdb|3G88|A Chain A, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex With Adomet In Space Group P61 Length = 249

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 121/218 (55%), Gaps = 11/218 (5%)
Query: 73  ALLQ-WNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTG 131
           ALLQ  + K+NLTA++   EV+ +H  DSL ++                  L+++D+GTG
Sbjct: 41  ALLQEASGKVNLTALRGEEEVVVKHFLDSLTLL----------RLPLWQGPLRVLDLGTG 90
Query: 132 AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFRE 191
           AG PGL L I  P+ ++ L+++  K+  F+E A+ +  L   + + GRAE L ++   RE
Sbjct: 91  AGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHRE 150
Query: 192 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC 251
            Y  AVARAVA + +L+E  LP + VGG  VA KG   +EE+     A++ +G  L ++ 
Sbjct: 151 AYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVL 210
Query: 252 SVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
           +++       R  VV  K+  TP  YPR PG P + PL
Sbjct: 211 ALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPL 248

>pdb|1JSX|A Chain A, Crystal Structure Of The Escherichia Coli Glucose-Inhibited Division Protein B (Gidb) Length = 207

Iteration: 1
 Score =  107 bits (267), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 22/210 (10%)
Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
           +L   Q+ Q+  YV+ L +WN+  NLT+V+D NE++ RHI DS+ + P ++         
Sbjct: 15  SLTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQGE------- 67
Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
                 + +DVGTG GLPG+ L+I  P+   TLL+S+ KR  FL       +L N++ V+
Sbjct: 68  ------RFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQ 121
Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
            R E    +  F    D  ++RA A +  +  +C  L    G F A KG  P++E+    
Sbjct: 122 SRVEEFPSEPPF----DGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP 177
Query: 238 RAVQLMGASLLQLCSVESQSPFGQRTAVVC 267
              Q+     LQ+ +++     G+R  VV 
Sbjct: 178 EEYQVESVVKLQVPALD-----GERHLVVI 202

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	2e-93
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	5e-90
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	4e-74
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	4e-05
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	7e-04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	8e-04

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 Length = 240

 Score =  275 bits (704), Expect = 2e-93
 Identities = 92/232 (39%), Positives = 126/232 (54%), Gaps = 10/232 (4%)

Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
           +L+ RQ EQ  LY D L++WN K+NLT++ +  EV  +H  DS+     +          
Sbjct: 17  SLSPRQLEQFELYYDMLVEWNEKINLTSITEKKEVYLKHFYDSITAAFYVDF-------- 68

Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
             N    + DVG GAG P L + I  P   VT+++S+NKR  FLE      QL N     
Sbjct: 69  --NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCH 126

Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
            RAET G+    RE YD+  ARAVA + +L+E CLPLV+  GLFVA K    +EE+   +
Sbjct: 127 DRAETFGQRKDVRESYDIVTARAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGK 186

Query: 238 RAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
           +A+  +G  L  + S +       R  +V  K + TPKKYPR PGTP K P+
Sbjct: 187 KAITTLGGELENIHSFKLPIEESDRNIMVIRKIKNTPKKYPRKPGTPNKSPI 238

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* Length = 249

 Score =  266 bits (683), Expect = 5e-90
 Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 61  TRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCN 120
               E        L + + K+NLTA++   EV+ +H  DSL ++                
Sbjct: 30  KPHLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLW----------Q 79

Query: 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA 180
             L+++D+GTGAG PGL L I  P+ ++ L+++  K+  F+E A+ +  L   + + GRA
Sbjct: 80  GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRA 139

Query: 181 ETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAV 240
           E L ++   RE Y  AVARAVA + +L+E  LP + VGG  VA KG   +EE+     A+
Sbjct: 140 EVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPAL 199

Query: 241 QLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
           + +G  L ++ +++       R  VV  K+  TP  YPR PG P + PL
Sbjct: 200 ERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPL 248

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 Length = 207

 Score =  224 bits (574), Expect = 4e-74
 Identities = 66/217 (30%), Positives = 108/217 (49%), Gaps = 22/217 (10%)

Query: 55  HFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSH 114
              +L   Q+ Q+  YV+ L +WN+  NLT+V+D NE++ RHI DS+ + P ++      
Sbjct: 12  AGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQGE---- 67

Query: 115 CDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQ 174
                    + +DVGTG GLPG+ L+I  P+   TLL+S+ KR  FL       +L N++
Sbjct: 68  ---------RFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIE 118

Query: 175 IVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVK 234
            V+ R E           +D  ++RA A +  +  +C  L    G F A KG  P++E+ 
Sbjct: 119 PVQSRVEEFPS----EPPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIA 174

Query: 235 NSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR 271
                 Q+     LQ+ +++     G+R  VV   ++
Sbjct: 175 LLPEEYQVESVVKLQVPALD-----GERHLVVIKANK 206

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 5e-06
 Identities = 46/334 (13%), Positives = 90/334 (26%), Gaps = 119/334 (35%)

Query: 13  VFHLPFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSH--------FETLNTRQQ 64
           VF   F      K +    ++                I+ S          F TL ++Q+
Sbjct: 24  VFEDAFVDNFDCKDVQDMPKSIL-------SKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 65  EQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSN-- 122
           E +  +V+ +L+ N K  ++ +K            S+     +   Y    D   N N  
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIK------TEQRQPSM-----MTRMYIEQRDRLYNDNQV 125

Query: 123 ------------------LKLVDVGTGAGLPGL------VLAI-ACPDWKV--------- 148
                             L  +       + G+       +A+  C  +KV         
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 149 -----------TLLESMNKRCVFLEHAVSLTQL--------LNVQIVRGRAETLGKDVSF 189
                      T+LE + K    ++   + T          L +  ++     L K   +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 190 REQY----DVAVARAVAEM----RIL-----------------AEYCLPLVRVG------ 218
                   +V  A+A        +IL                     L    +       
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 219 -GLFVAAKGHD----PQEEVKNSERAVQLMGASL 247
             L +          P+E +  + R + ++  S+
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 29/160 (18%)

Query: 81  MNLTAVKDV-NEVMER---HIDDSLAIIPPIKNSYTSHCDSSCN--SNLKLVDVGTGAGL 134
           M+L+ +K   + V  +           IP   + Y      +     N  ++D+G G GL
Sbjct: 1   MSLSEIKRKFDAVSGKYDEQRRKF---IPCFDDFYGVSVSIASVDTENPDILDLGAGTGL 57

Query: 135 PGLVLAIACPDWKVTLL---ESMNKRCVFLEHAVS-LTQLLNVQIVRGRAETLGKDVSFR 190
               L    P+   TL+   E M      LE A +     L V+ +            F 
Sbjct: 58  LSAFLMEKYPEATFTLVDMSEKM------LEIAKNRFRGNLKVKYIEADYSKY----DFE 107

Query: 191 EQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAA 224
           E+YD+ V+          + + L +    +++  G+F+ A
Sbjct: 108 EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINA 147

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 22/119 (18%)

Query: 120 NSNLKLVDVGTGAGLPGLVLA-IACPDWKVTLL---ESMNKRCVFLEHAVSLTQL--LNV 173
              + +VD G G G  GLVL  +     K T +   E++      L  A  L +L   + 
Sbjct: 21  TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETL------LAEARELFRLLPYDS 74

Query: 174 QIVRGRAETLGKDVSFREQYDVAVARAVAE-----MRILAEYCLPLVRVGGLFVAAKGH 227
           + + G A  +       ++YD+A+  A          +L +  +  V+ GG  +  + H
Sbjct: 75  EFLEGDATEI----ELNDKYDIAICHAFLLHMTTPETMLQK-MIHSVKKGGKIICFEPH 128

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 28/142 (19%), Positives = 42/142 (29%), Gaps = 25/142 (17%)

Query: 124 KLVDVGTGAGLPGLVLAI-ACPDWKVTLL---ESMNKRCVFLEHAVSLTQLL----NVQI 175
            +  V  G     L L   ACP  ++  +            L+ A  L         + +
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEA------LDGATRLAAGHALAGQITL 174

Query: 176 VRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRV-------GGLFVAAKGHD 228
            R  A  L      RE YD+  +  +            L R        GG  V +    
Sbjct: 175 HRQDAWKL----DTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230

Query: 229 PQEEVKNSERAVQLMGASLLQL 250
           P     +S   +Q +    LQL
Sbjct: 231 PPALSPDSPWDMQAIDPHDLQL 252

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 24/135 (17%), Positives = 40/135 (29%), Gaps = 31/135 (22%)

Query: 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLL---ESMNKRCVFLEHAVSLTQL--LNVQ 174
           N +  ++D G G  LP L +      +K   +   +        L+ A + ++     + 
Sbjct: 22  NLDKTVLDCGAGGDLPPLSIF-VEDGYKTYGIEISDLQ------LKKAENFSRENNFKLN 74

Query: 175 IVRGRAETLG-KDVSFREQYDVAVARAVAEM-------RILAEYCLPLVRV---GGLFVA 223
           I +G    L  KD S         +               + E      RV   GGL   
Sbjct: 75  ISKGDIRKLPFKDESM----SFVYSYGTIFHMRKNDVKEAIDEIK----RVLKPGGLACI 126

Query: 224 AKGHDPQEEVKNSER 238
                  E     E+
Sbjct: 127 NFLTTKDERYNKGEK 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	100.0
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	100.0
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.95
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.91
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.86
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.85
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.82
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.82
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.79
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.79
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.78
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.78
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.78
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.78
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.78
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.77
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.76
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.75
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.75
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.75
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.75
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.74
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.74
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.74
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.74
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.74
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.74
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.74
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.74
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.74
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.73
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.73
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.73
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.73
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.73
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.72
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.72
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.72
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.71
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.71
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.71
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.71
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.71
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.71
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.71
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.71
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.7
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.7
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.7
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.7
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.7
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.7
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.7
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.7
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.7
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.7
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.69
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.69
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.69
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.69
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.69
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.69
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.69
3ocj_A	305	Putative exported protein; structural genomics, PS	99.69
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.69
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.69
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.69
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.69
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.69
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.69
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.69
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.68
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.68
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.68
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.68
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.68
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.68
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.68
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.68
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.67
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.67
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.67
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.67
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.67
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.67
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.67
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.66
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.66
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.66
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.66
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.66
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.66
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.66
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.65
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.65
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.65
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.65
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.65
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.65
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.65
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.65
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.65
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.65
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.64
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.64
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.64
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.64
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.64
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.64
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.64
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.64
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.63
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.63
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.63
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.63
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.63
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.63
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.63
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.62
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.62
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.62
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.62
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.62
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.62
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.62
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.62
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.62
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.62
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.62
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.62
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.61
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.61
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.61
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.61
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.61
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.61
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.61
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.61
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.6
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.6
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.6
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.6
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.6
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.6
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.6
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.6
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.6
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.6
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.59
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.59
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.59
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.59
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.59
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.59
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.59
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.59
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.59
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.59
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.58
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.58
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.58
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.58
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.57
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.57
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.57
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.57
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.57
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.57
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.57
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.57
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.57
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.56
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.56
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.56
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.56
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.56
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.56
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.56
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.56
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.56
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.56
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.55
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.55
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.55
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.55
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.55
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.55
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.55
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.54
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.54
2o07_A	304	Spermidine synthase; structural genomics, structur	99.54
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.54
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.54
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.54
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.54
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.54
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.53
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.53
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.53
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.53
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.53
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.53
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.53
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.52
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.52
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.52
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.51
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.51
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.51
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.51
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.51
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.51
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.5
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.5
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.5
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.5
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.5
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.49
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.49
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.48
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.48
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.48
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.48
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.47
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.47
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.47
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.46
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.46
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.46
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.45
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.45
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.44
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.41
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.4
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.4
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.4
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.38
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.37
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.36
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.36
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.35
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.35
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.35
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.34
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.34
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.34
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.33
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.33
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.31
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.31
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.3
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.3
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.3
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.29
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.29
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.25
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.23
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.16
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.15
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.13
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.1
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.09
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.08
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.06
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.06
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.05
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.03
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.03
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	99.02
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.01
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.01
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.98
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.97
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.94
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.93
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.9
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.9
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.88
3lkd_A	542	Type I restriction-modification system methyltrans	98.87
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.83
3khk_A	544	Type I restriction-modification system methylation	98.78
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.72
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.68
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.68
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.56
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.41
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.34
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.32
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.3
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.29
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.28
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.28
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.24
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.22
3ufb_A	530	Type I restriction-modification system methyltran	98.17
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.12
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	98.07
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.0
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.92
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.89
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.85
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.85
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.41
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.36
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.36
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.33
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.29
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.05
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.97
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.87
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.75
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.74
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.69
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.61
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.56
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.51
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.5
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.33
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.31
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.29
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.28
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.21
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.2
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.08
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.05
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.92
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.89
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.86
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.78
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.77
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.75
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.69
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.64
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.6
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.59
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	95.55
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.45
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.42
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.41
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.38
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.33
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.32
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.31
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.3
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.26
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.22
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.21
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.1
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.07
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.03
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.02
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.99
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.96
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.94
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.93
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.89
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	94.8
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.77
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.7
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.64
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	94.59
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	94.54
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	94.49
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.42
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	94.37
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	94.33
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	94.22
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	94.18
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.13
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.11
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	94.11
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.11
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.82
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.73
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.69
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	93.68
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	93.59
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	93.38
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.38
3me5_A	482	Cytosine-specific methyltransferase; structural ge	93.34
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.31
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.29
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	93.19
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	93.15
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	92.99
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	92.9
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	92.72
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	92.41
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	92.4
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	92.3
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	92.23
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.17
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.14
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	92.03
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	92.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	91.99
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	91.94
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	91.88
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	91.87
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	91.8
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.62
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	91.43
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.35
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	91.25
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	91.16
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	91.0
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	90.98
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	90.85
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	90.8
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	90.8
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	90.79
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	90.79
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	90.73
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	90.64
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	90.61
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	90.58
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.52
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	90.46
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	90.42
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.34
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	90.32
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	90.24
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	90.22
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	90.11
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	89.99
4f6c_A	427	AUSA reductase domain protein; thioester reductase	89.8
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	89.76
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	89.7
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	89.69
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	89.63
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	89.62
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	89.58
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	89.57
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	89.51
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	89.45
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	89.34
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	89.26
4ezb_A	317	Uncharacterized conserved protein; structural geno	89.09
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	89.06
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.97
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	88.81
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	88.56
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	88.43
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	88.39
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	88.35
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	88.29
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	88.07
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	87.84
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	87.82
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	87.74
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	87.7
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	87.56
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	87.5
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	87.48
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	87.43
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	87.28
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	87.2
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	87.16
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	87.16
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	87.1
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	87.07
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	86.99
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	86.97
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	86.92
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	86.91
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	86.79
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	86.77
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	86.46
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	86.22
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	86.18
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	86.12
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	86.06
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	86.04
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	86.03
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	85.96
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	85.77
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	85.69
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	85.65
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	85.62
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	85.59
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	85.32
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	85.26
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	85.22
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	85.17
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	85.15
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	85.14
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	85.09
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	84.97
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	84.79
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	84.71
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	84.7
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	84.67
4f6l_B	508	AUSA reductase domain protein; thioester reductase	84.64
4had_A	350	Probable oxidoreductase protein; structural genomi	84.64
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	84.44
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	84.37
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	84.34
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	84.31
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	84.3
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	84.26

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=100.00  E-value=1.2e-41  Score=301.45  Aligned_cols=228  Identities=34%  Similarity=0.509  Sum_probs=198.9

Q ss_pred             hhhccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcC
Q 022962           51 VNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGT  130 (289)
Q Consensus        51 ~~~~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGc  130 (289)
                      ....+..++++ +.+++..|.+.+.+||+++|++++++..++|.+++++++.++++++.          .++.+||||||
T Consensus        21 ~~~~~g~~l~~-~~~~~~~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~~~~----------~~~~~vLDiG~   89 (249)
T 3g89_A           21 GGKALGLDLKP-HLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLW----------QGPLRVLDLGT   89 (249)
T ss_dssp             HHHHHTCCCGG-GHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHGGGGSSCC----------CSSCEEEEETC
T ss_pred             HHHHcCCCccH-HHHHHHHHHHHHHHHhcCCCCceECCHHHHhhceeeechhhhccccc----------CCCCEEEEEcC
Confidence            34456778889 99999999999999999999999999999999999999998877542          24789999999


Q ss_pred             CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcccHHHHHHH
Q 022962          131 GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEY  210 (289)
Q Consensus       131 G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~~~~ll~~  210 (289)
                      |+|.+++.+|..+|+.+|+|+|+|++++++|+++++.++++||+++++|++++......+++||+|+|++++++..+++.
T Consensus        90 G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~~~~~~ll~~  169 (249)
T 3g89_A           90 GAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSEL  169 (249)
T ss_dssp             TTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESSCCHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCcCCHHHHHHH
Confidence            99999999999999999999999999999999999999998999999999988643223478999999999999999999


Q ss_pred             HccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecCCCCCCCCCCCCCCcCCCC
Q 022962          211 CLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL  289 (289)
Q Consensus       211 ~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~~~p~~~pr~~g~~~~~~~  289 (289)
                      +.++|||||+|++++|....+++.++.+.++..|+.+.++..+..|...+.|++++++|.++||.+|||++|+|+|.||
T Consensus       170 ~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~~~t~~~yPr~~g~~~k~pl  248 (249)
T 3g89_A          170 LLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPL  248 (249)
T ss_dssp             HGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEECSCCCTTCSCSTTHHHHSCC
T ss_pred             HHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeCCCCCCCCCCCCCCcCCCCC
Confidence            9999999999999999888899998888999999999999988888878899999999999999999999999999998

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=100.00  E-value=1.4e-36  Score=266.70  Aligned_cols=229  Identities=40%  Similarity=0.643  Sum_probs=203.7

Q ss_pred             hhhccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcC
Q 022962           51 VNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGT  130 (289)
Q Consensus        51 ~~~~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGc  130 (289)
                      ....+..++++++.+++..|.+.+.+||..++++.+....++|.+++.+++.......          +.++.+||||||
T Consensus        10 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~d~l~~~~~~~----------~~~~~~vLDiG~   79 (240)
T 1xdz_A           10 GLAEKGISLSPRQLEQFELYYDMLVEWNEKINLTSITEKKEVYLKHFYDSITAAFYVD----------FNQVNTICDVGA   79 (240)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHHHHSCCCSCCSHHHHHHHTHHHHHGGGGTSC----------GGGCCEEEEECS
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHHHhHhcCccccCCHHHHHHHHHHHHHhHHHhcc----------cCCCCEEEEecC
Confidence            3455778899999999999999999999999999999999999999999887654331          123789999999


Q ss_pred             CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcccHHHHHHH
Q 022962          131 GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEY  210 (289)
Q Consensus       131 G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~~~~ll~~  210 (289)
                      |+|.+++.+|...++.+|+|+|+|+++++.|+++++.++++|++++++|++++......+++||+|+|+++.++..+++.
T Consensus        80 G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~~~~~~l~~  159 (240)
T 1xdz_A           80 GAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAVARLSVLSEL  159 (240)
T ss_dssp             SSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECCSCHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEeccCCHHHHHHH
Confidence            99999999998888899999999999999999999999998899999999987632112368999999999999999999


Q ss_pred             HccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecCCCCCCCCCCCCCCcCCCC
Q 022962          211 CLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL  289 (289)
Q Consensus       211 ~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~~~p~~~pr~~g~~~~~~~  289 (289)
                      +.++|+|||.+++..|....+++.++.+.++..|+.+.++..+.+|...+.+.+++++|...+|.+|||++|.|.|.||
T Consensus       160 ~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~~~~~~~~pr~~~~~~~~pl  238 (240)
T 1xdz_A          160 CLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIKNTPKKYPRKPGTPNKSPI  238 (240)
T ss_dssp             HGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECSCCCTTCSCSTTHHHHSCC
T ss_pred             HHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEecCCCCCCCCCCCCccccCCC
Confidence            9999999999999998888888888888899999999988877777777899999999999999999999999999998

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.95  E-value=2.4e-26  Score=195.96  Aligned_cols=198  Identities=32%  Similarity=0.509  Sum_probs=158.3

Q ss_pred             hhhccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcC
Q 022962           51 VNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGT  130 (289)
Q Consensus        51 ~~~~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGc  130 (289)
                      .......++++++.+.+..|.+.+.+|+..+++.......+.+.+++++.+......             ++.+|||+||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~vLDiG~   74 (207)
T 1jsx_A            8 LLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAPYL-------------QGERFIDVGT   74 (207)
T ss_dssp             HHHTTTCCCCHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHGGGC-------------CSSEEEEETC
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHhhhhhhhhc-------------CCCeEEEECC
Confidence            344567789999999999999999999999999988777777777877766533211             2679999999


Q ss_pred             CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcccHHHHHHH
Q 022962          131 GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEY  210 (289)
Q Consensus       131 G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~~~~ll~~  210 (289)
                      |+|.+++.++..+|+.+|+|+|+|+.+++.++++++.+++++++++++|+.+...    .++||+|+++++.++..+++.
T Consensus        75 G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~i~~~~~~~~~~~l~~  150 (207)
T 1jsx_A           75 GPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS----EPPFDGVISRAFASLNDMVSW  150 (207)
T ss_dssp             TTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC----CSCEEEEECSCSSSHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc----cCCcCEEEEeccCCHHHHHHH
Confidence            9999999999988899999999999999999999999998889999999988653    268999999999999999999


Q ss_pred             HccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962          211 CLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  270 (289)
Q Consensus       211 ~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~  270 (289)
                      +.++|+|||.+++..|..+.+++.++.+     ||.+.++..+.+|...+.+.+++++|.
T Consensus       151 ~~~~L~~gG~l~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~k~  205 (207)
T 1jsx_A          151 CHHLPGEQGRFYALKGQMPEDEIALLPE-----EYQVESVVKLQVPALDGERHLVVIKAN  205 (207)
T ss_dssp             HTTSEEEEEEEEEEESSCCHHHHHTSCT-----TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred             HHHhcCCCcEEEEEeCCCchHHHHHHhc-----CCceeeeeeeccCCCCCceEEEEEEec
Confidence            9999999999999999888877765433     999888877777877888999998875

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.91  E-value=8.8e-24  Score=188.82  Aligned_cols=188  Identities=18%  Similarity=0.237  Sum_probs=155.0

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccCCCC-CCCCeEEEEcC
Q 022962           54 SHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCDSSC-NSNLKLVDVGT  130 (289)
Q Consensus        54 ~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~~~~-~~~~~VLDiGc  130 (289)
                      ....++++++.+++..+.+.+.   .+.|++++.+..+||...+..+...+.|+++++.+  +....+ .++.+|||+||
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~i~g~~~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~~~~~~~vLDlG~  118 (276)
T 2b3t_A           42 FGETQLTDEQCQQLDALLTRRR---DGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGT  118 (276)
T ss_dssp             TTTCBCCHHHHHHHHHHHHHHH---TTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETC
T ss_pred             ccCCCCCHHHHHHHHHHHHHHH---cCCChhHeeeeeEECCceEEeCCCCcccCchHHHHHHHHHHhcccCCCEEEEecC
Confidence            3456788888888888887765   78999999999999999888788888888887743  111111 35779999999


Q ss_pred             CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC----------
Q 022962          131 GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----------  200 (289)
Q Consensus       131 G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----------  200 (289)
                      |+|.+++.++...|+.+|+|+|+|+.+++.+++|++.+++++++++++|+.+...    +++||+|++|.          
T Consensus       119 GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~----~~~fD~Iv~npPy~~~~~~~l  194 (276)
T 2b3t_A          119 GTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA----GQQFAMIVSNPPYIDEQDPHL  194 (276)
T ss_dssp             TTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT----TCCEEEEEECCCCBCTTCHHH
T ss_pred             CccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc----cCCccEEEECCCCCCcccccc
Confidence            9999999999888999999999999999999999999998889999999987422    36899999982          


Q ss_pred             -------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          201 -------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 -------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                                         ...+..+++.+.++|+|||+++++.+..+.+++..+   ++..||..+++.
T Consensus       195 ~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---l~~~Gf~~v~~~  261 (276)
T 2b3t_A          195 QQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQA---FILAGYHDVETC  261 (276)
T ss_dssp             HSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHH---HHHTTCTTCCEE
T ss_pred             ChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHH---HHHCCCcEEEEE
Confidence                               134688999999999999999999988887776654   557899766554

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.86  E-value=2.8e-22  Score=180.40  Aligned_cols=194  Identities=13%  Similarity=0.069  Sum_probs=147.5

Q ss_pred             ccchhhhhhchhhhhhhccCCCC-C--HHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc
Q 022962           37 PHRTRAKTLTTTRIVNSSHFETL-N--TRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS  113 (289)
Q Consensus        37 ~~r~~~~~l~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~  113 (289)
                      ..+..++.|..+..........+ .  +.+... ..|.+.+.++..+.|++++.+..+||...+..+...+.|+++|+.+
T Consensus        33 ~~~~~a~~ll~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~r~~~~p~~yi~g~~~f~~~~~~v~~~~lipr~~te~l  111 (284)
T 1nv8_A           33 TSVLEVLLIVSRVLGIRKEDLFLKDLGVSPTEE-KRILELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEEL  111 (284)
T ss_dssp             CHHHHHHHHHHHHHTCCGGGGCCSSCCCCHHHH-HHHHHHHHHHHTTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHH
T ss_pred             ChHHHHHHHHHHHcCCCHHHHHhccccccccCH-HHHHHHHHHHHCCCCCeEEeeeeEECCeEEEeCCCceecChhHHHH
Confidence            34556677766663322222111 1  222332 6677777777899999999999999999999888889999988854


Q ss_pred             --ccCCC--CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCc
Q 022962          114 --HCDSS--CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVS  188 (289)
Q Consensus       114 --~~~~~--~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~  188 (289)
                        +....  ..++.+|||+|||+|.+++.++.. |+.+|+|+|+|+++++.|++|++.+++++ ++++++|+.+...   
T Consensus       112 v~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~---  187 (284)
T 1nv8_A          112 VELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK---  187 (284)
T ss_dssp             HHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG---
T ss_pred             HHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc---
Confidence              11111  124679999999999999999998 89999999999999999999999999875 9999999987421   


Q ss_pred             CCCCc---eEEEEcCc--------------cc---------HHHHHHHHc-cccccCeEEEEEEcCCcHHHHHHHH
Q 022962          189 FREQY---DVAVARAV--------------AE---------MRILAEYCL-PLVRVGGLFVAAKGHDPQEEVKNSE  237 (289)
Q Consensus       189 ~~~~f---D~V~sn~~--------------~~---------~~~ll~~~~-~~LkpgG~l~~~~g~~~~~ei~~~~  237 (289)
                        ++|   |+|+||..              .+         -..+++.+. +.|+|||+++++.|..+.+++.+++
T Consensus       188 --~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~  261 (284)
T 1nv8_A          188 --EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIV  261 (284)
T ss_dssp             --GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTS
T ss_pred             --cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHH
Confidence              468   99999831              00         116788999 9999999999999988887776543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.85  E-value=4.7e-20  Score=159.46  Aligned_cols=148  Identities=14%  Similarity=0.126  Sum_probs=112.0

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +++.+|||+||| +|.+++.++... +.+|+|+|+|+.+++.|+++++.+++ +++++++|+..+...  .+++||+|++
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~--~~~~fD~I~~  129 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGV--VEGTFDVIFS  129 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTT--CCSCEEEEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhc--ccCceeEEEE
Confidence            458899999999 999999999875 68999999999999999999999998 899999997654321  1378999999


Q ss_pred             cCc-----------------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeec
Q 022962          199 RAV-----------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVES  255 (289)
Q Consensus       199 n~~-----------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~  255 (289)
                      |..                       ..+..+++.+.++|||||++++..... ......+.+.+++.||.+..+...  
T Consensus       130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~--  206 (230)
T 3evz_A          130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-EKLLNVIKERGIKLGYSVKDIKFK--  206 (230)
T ss_dssp             CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-HHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred             CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-HhHHHHHHHHHHHcCCceEEEEec--
Confidence            831                       124789999999999999999876433 244556667788999987776532  


Q ss_pred             CCCCCceEEEEEEecCCCCC
Q 022962          256 QSPFGQRTAVVCLKSRRTPK  275 (289)
Q Consensus       256 ~~~~~~r~lv~~~k~~~~p~  275 (289)
                       .......++.+.|..+.|+
T Consensus       207 -~g~~~~~~l~f~~~~~~~~  225 (230)
T 3evz_A          207 -VGTRWRHSLIFFKGISEGH  225 (230)
T ss_dssp             -CCC-CEEEEEEECCC----
T ss_pred             -CCCeEEEEEEEeccccccc
Confidence             2334555666666555543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.82  E-value=8.6e-19  Score=154.93  Aligned_cols=144  Identities=14%  Similarity=0.155  Sum_probs=114.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.+++.+|...+. +|+|+|+++.+++.|+++++.+++. +++++++|+.++... ...++||+|++|
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~~~~~fD~Ii~n  126 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-IPKERADIVTCN  126 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-SCTTCEEEEEEC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-hccCCccEEEEC
Confidence            4789999999999999999987544 9999999999999999999999986 599999999987531 114789999998


Q ss_pred             Cc------------------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeec
Q 022962          200 AV------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVES  255 (289)
Q Consensus       200 ~~------------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~  255 (289)
                      ..                        .++..+++.+.++|+|||++++..+.....++.   ..++..|+...++..+. 
T Consensus       127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~l~~~~~~~~~~~~v~-  202 (259)
T 3lpm_A          127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDII---DIMRKYRLEPKRIQFVH-  202 (259)
T ss_dssp             CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHH---HHHHHTTEEEEEEEEEE-
T ss_pred             CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHH---HHHHHCCCceEEEEEee-
Confidence            31                        235689999999999999999988776666654   45668899999888763 


Q ss_pred             CCCC--CceEEEEEEec
Q 022962          256 QSPF--GQRTAVVCLKS  270 (289)
Q Consensus       256 ~~~~--~~r~lv~~~k~  270 (289)
                      +.+.  ..+.++..+|.
T Consensus       203 ~~~~~~~~~~l~~~~k~  219 (259)
T 3lpm_A          203 PRSDREANTVLVEGIKD  219 (259)
T ss_dssp             SSTTSCCSEEEEEEEET
T ss_pred             cCCCCCcEEEEEEEEeC
Confidence            4333  34555555554

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.82  E-value=2.6e-19  Score=149.72  Aligned_cols=144  Identities=16%  Similarity=0.043  Sum_probs=107.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.+++.+|..  +.+|+|+|+|+.+++.|+++++.++++++++++++.+++...  .+++||+|+++.
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~--~~~~fD~v~~~~   97 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHY--VREPIRAAIFNL   97 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGT--CCSCEEEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhh--ccCCcCEEEEeC
Confidence            4789999999999999999976  789999999999999999999999988899999888875422  147899999981


Q ss_pred             -------------cccHHHHHHHHccccccCeEEEEEEcC---C---cHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCc
Q 022962          201 -------------VAEMRILAEYCLPLVRVGGLFVAAKGH---D---PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ  261 (289)
Q Consensus       201 -------------~~~~~~ll~~~~~~LkpgG~l~~~~g~---~---~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~  261 (289)
                                   ......+++++.++|||||++++..-.   .   ..+.+....+.+...+|.+....++.  .....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~  175 (185)
T 3mti_A           98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLN--QINTP  175 (185)
T ss_dssp             C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESS--CSSCC
T ss_pred             CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhc--cCCCC
Confidence                         134467889999999999999876422   1   12233334444444567777766542  33455


Q ss_pred             eEEEEEEec
Q 022962          262 RTAVVCLKS  270 (289)
Q Consensus       262 r~lv~~~k~  270 (289)
                      ..+++++|+
T Consensus       176 ~~~~~i~~~  184 (185)
T 3mti_A          176 PFLVMLEKL  184 (185)
T ss_dssp             CEEEEEEEC
T ss_pred             CeEEEEEec
Confidence            667777664

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.79  E-value=3.5e-18  Score=151.80  Aligned_cols=100  Identities=14%  Similarity=0.196  Sum_probs=87.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ++.+|||||||+|..++.+++..  ++++|+|||+|+.|++.|+++++..+.. +|+++++|+.+++.     ++||+|+
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-----~~~d~v~  144 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----ENASMVV  144 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-----CSEEEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-----cccccce
Confidence            58899999999999999999874  5789999999999999999999888764 69999999998865     5699999


Q ss_pred             EcCc------ccHHHHHHHHccccccCeEEEEEE
Q 022962          198 ARAV------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       198 sn~~------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ++.+      .+...++++++++|||||.|++..
T Consensus       145 ~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          145 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence            9842      245679999999999999999753

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.79  E-value=4.1e-18  Score=146.10  Aligned_cols=128  Identities=13%  Similarity=0.057  Sum_probs=105.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.+++.+|...|+.+|+|+|+|+.+++.|+++++..+++|++++++|+.++... ..+++||+|+++.
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~D~i~~~~  119 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY-FEDGEIDRLYLNF  119 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT-SCTTCCSEEEEES
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh-cCCCCCCEEEEEC
Confidence            367999999999999999999999999999999999999999999999988999999999886521 0136899999985


Q ss_pred             ccc------------HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          201 VAE------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 ~~~------------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      ...            ...+++.+.++|+|||.+++..+.  ......+.+.+...||....+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~g~~~~~~~  180 (214)
T 1yzh_A          120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN--RGLFEYSLVSFSQYGMKLNGVW  180 (214)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC--HHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC--HHHHHHHHHHHHHCCCeeeecc
Confidence            332            368999999999999999987643  2233455566778899877664

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.78  E-value=2.6e-18  Score=147.02  Aligned_cols=143  Identities=14%  Similarity=0.082  Sum_probs=112.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.++..++... |..+|+|+|+|+.+++.+++++...++.+++++++|+.+++..   +++||+|+++
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~---~~~fD~v~~~  113 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP---DNTVDFIFMA  113 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC---SSCEEEEEEE
T ss_pred             CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCC---CCCeeEEEee
Confidence            47899999999999999999885 7789999999999999999999999988999999999987643   3789999998


Q ss_pred             C----cccHHHHHHHHccccccCeEEEEEEcCC----------cHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEE
Q 022962          200 A----VAEMRILAEYCLPLVRVGGLFVAAKGHD----------PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAV  265 (289)
Q Consensus       200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~g~~----------~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv  265 (289)
                      .    +.+...+++++.++|+|||.+++..-..          ......++.+.++..||++++...+     ......+
T Consensus       114 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-----~~~~~~~  188 (219)
T 3dh0_A          114 FTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEV-----GKYCFGV  188 (219)
T ss_dssp             SCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEE-----TTTEEEE
T ss_pred             hhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEee-----CCceEEE
Confidence            4    3467899999999999999999864210          0011234555677999998887644     2345566


Q ss_pred             EEEecC
Q 022962          266 VCLKSR  271 (289)
Q Consensus       266 ~~~k~~  271 (289)
                      +++|..
T Consensus       189 ~~~k~~  194 (219)
T 3dh0_A          189 YAMIVK  194 (219)
T ss_dssp             EEECC-
T ss_pred             EEEecc
Confidence            666653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.78  E-value=9.1e-18  Score=143.48  Aligned_cols=125  Identities=17%  Similarity=0.128  Sum_probs=105.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.+++.+|..  +.+|+|+|+|+.+++.|+++++.++++ +++++++|+.+....   ..+||+|+++
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~---~~~~D~v~~~  129 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD---LPLPEAVFIG  129 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT---SCCCSEEEEC
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc---CCCCCEEEEC
Confidence            4789999999999999999976  789999999999999999999999998 899999999884322   2579999999


Q ss_pred             CcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      ...+.+ +++++.++|||||++++...  ..+....+.+.+++.|+++.++...
T Consensus       130 ~~~~~~-~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~i~~i~~~  180 (204)
T 3njr_A          130 GGGSQA-LYDRLWEWLAPGTRIVANAV--TLESETLLTQLHARHGGQLLRIDIA  180 (204)
T ss_dssp             SCCCHH-HHHHHHHHSCTTCEEEEEEC--SHHHHHHHHHHHHHHCSEEEEEEEE
T ss_pred             CcccHH-HHHHHHHhcCCCcEEEEEec--CcccHHHHHHHHHhCCCcEEEEEee
Confidence            766677 99999999999999998653  2455566677788999988877643

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.78  E-value=2.1e-18  Score=145.51  Aligned_cols=146  Identities=14%  Similarity=0.044  Sum_probs=109.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+|||+|||+|.+++.++... |..+|+|+|+|+.+++.|+++++.+++ .+++++++|+.++...  .+++||+|++
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~v~~   99 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY--IDCPVKAVMF   99 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT--CCSCEEEEEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh--ccCCceEEEE
Confidence            47899999999999999999875 667999999999999999999999988 5799999999887532  2378999999


Q ss_pred             cCcc-------------cHHHHHHHHccccccCeEEEEEEc---CCcHHH---HHHHHHHHHHhCCeEeEEeeeecCCCC
Q 022962          199 RAVA-------------EMRILAEYCLPLVRVGGLFVAAKG---HDPQEE---VKNSERAVQLMGASLLQLCSVESQSPF  259 (289)
Q Consensus       199 n~~~-------------~~~~ll~~~~~~LkpgG~l~~~~g---~~~~~e---i~~~~~~l~~~g~~~~~~~~~~~~~~~  259 (289)
                      +..-             +...+++++.++|||||++++..-   ....++   +....+.+...+|.+.....+  ....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~--~~~~  177 (197)
T 3eey_A          100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFI--NQAN  177 (197)
T ss_dssp             EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEET--TCCS
T ss_pred             cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEec--cCcc
Confidence            8411             346799999999999999998642   122223   333333334456777666544  2334


Q ss_pred             CceEEEEEEec
Q 022962          260 GQRTAVVCLKS  270 (289)
Q Consensus       260 ~~r~lv~~~k~  270 (289)
                      ....+++.++.
T Consensus       178 ~pp~~~~~~~~  188 (197)
T 3eey_A          178 CPPILVCIEKI  188 (197)
T ss_dssp             CCCEEEEEEEC
T ss_pred             CCCeEEEEEEc
Confidence            56677777776

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.78  E-value=1.2e-17  Score=141.94  Aligned_cols=120  Identities=14%  Similarity=0.120  Sum_probs=102.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.+++.++...|..+|+|+|+|+.+++.|+++++.+++++++++++|+.+....   .++||+|+++.
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~i~~~~  116 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD---LPDPDRVFIGG  116 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT---SCCCSEEEESC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc---CCCCCEEEECC
Confidence            478999999999999999999988899999999999999999999999988899999999664332   26799999985


Q ss_pred             -cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCC
Q 022962          201 -VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA  245 (289)
Q Consensus       201 -~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~  245 (289)
                       ..++..+++++.++|+|||++++...  ..+....+.+.+++.||
T Consensus       117 ~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~l~~~g~  160 (204)
T 3e05_A          117 SGGMLEEIIDAVDRRLKSEGVIVLNAV--TLDTLTKAVEFLEDHGY  160 (204)
T ss_dssp             CTTCHHHHHHHHHHHCCTTCEEEEEEC--BHHHHHHHHHHHHHTTC
T ss_pred             CCcCHHHHHHHHHHhcCCCeEEEEEec--ccccHHHHHHHHHHCCC
Confidence             45788999999999999999998643  23445556677889998

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=4.9e-18  Score=150.52  Aligned_cols=148  Identities=17%  Similarity=0.229  Sum_probs=113.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH---cCCC-CEEEEeccccccCCC----CcCCCC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL---TQLL-NVQIVRGRAETLGKD----VSFREQ  192 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~---~~l~-ni~~~~~d~~~~~~~----~~~~~~  192 (289)
                      ++.+|||+|||+|.+++.++...|+.+|+|+|+++.+++.|+++++.   +++. +++++++|+.++...    ...+++
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  115 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH  115 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence            36799999999999999999998889999999999999999999988   8876 599999999886210    011368


Q ss_pred             ceEEEEcCc----------------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          193 YDVAVARAV----------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       193 fD~V~sn~~----------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                      ||+|++|..                      ..+..+++.+.++|||||+|+++.+....+++.   +.++.. |...++
T Consensus       116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~l~~~-~~~~~i  191 (260)
T 2ozv_A          116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEII---AACGSR-FGGLEI  191 (260)
T ss_dssp             EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHH---HHHTTT-EEEEEE
T ss_pred             cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHH---HHHHhc-CCceEE
Confidence            999999821                      136789999999999999999988776655543   444453 777777


Q ss_pred             eeeecCCCC--CceEEEEEEecCCC
Q 022962          251 CSVESQSPF--GQRTAVVCLKSRRT  273 (289)
Q Consensus       251 ~~~~~~~~~--~~r~lv~~~k~~~~  273 (289)
                      ..+ ++...  ..+.++..+|...+
T Consensus       192 ~~v-~~~~~~~~~~~lv~~~k~~~~  215 (260)
T 2ozv_A          192 TLI-HPRPGEDAVRMLVTAIKGSRA  215 (260)
T ss_dssp             EEE-ESSTTSCCCEEEEEEEETCCC
T ss_pred             EEE-cCCCCCCceEEEEEEEeCCCC
Confidence            655 34333  44556666664433

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.77  E-value=1e-17  Score=144.09  Aligned_cols=126  Identities=17%  Similarity=0.085  Sum_probs=102.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||||||+|.+++.+|..+|+.+|+|||+|+.+++.|+++++..++.|++++++|+.++... ..+++||.|+++..
T Consensus        39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~-~~~~~~d~v~~~~~  117 (213)
T 2fca_A           39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDV-FEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHH-CCTTSCCEEEEESC
T ss_pred             CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh-cCcCCcCEEEEECC
Confidence            67999999999999999999999999999999999999999999999998999999999886410 01368999998732


Q ss_pred             cc------------HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          202 AE------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       202 ~~------------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                      .+            ...+++++.++|||||.+++....  ......+.+.+...||....+
T Consensus       118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~--~~~~~~~~~~~~~~g~~~~~~  176 (213)
T 2fca_A          118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN--RGLFEYSLKSFSEYGLLLTYV  176 (213)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC--HHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHCCCccccc
Confidence            11            368999999999999999987643  222334455667889877654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.76  E-value=1.1e-17  Score=142.26  Aligned_cols=124  Identities=19%  Similarity=0.309  Sum_probs=103.5

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC--
Q 022962          124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA--  200 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--  200 (289)
                      +|||+|||+|.++..++.. ++.+|+|+|+|+.+++.|+++++..++. +++++++|+.+++..   +++||+|+++.  
T Consensus        46 ~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~l  121 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE---DNYADLIVSRGSV  121 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC---TTCEEEEEEESCG
T ss_pred             EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC---cccccEEEECchH
Confidence            9999999999999999987 7789999999999999999999998875 799999999987643   37899999985  


Q ss_pred             --cccHHHHHHHHccccccCeEEEEEEcCCc---------------------------HHHHHHHHHHHHHhCCeEeEEe
Q 022962          201 --VAEMRILAEYCLPLVRVGGLFVAAKGHDP---------------------------QEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 --~~~~~~ll~~~~~~LkpgG~l~~~~g~~~---------------------------~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                        +.+...+++++.++|+|||.+++......                           .....++.+.++++||+.+++.
T Consensus       122 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  201 (219)
T 3dlc_A          122 FFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEII  201 (219)
T ss_dssp             GGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred             hhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence              35778999999999999999998642211                           1122456677889999888775

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.75  E-value=8.3e-17  Score=138.29  Aligned_cols=142  Identities=15%  Similarity=0.076  Sum_probs=100.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|..+..+|...+..+|+|+|+|+.|++.+.+.++..  .|+.++.+|+.+......+.++||+|+++.
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  134 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLIYQDI  134 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccccceeEEEEec
Confidence            478999999999999999998877789999999999988777776654  479999999876421011237899999984


Q ss_pred             cc--cHHHHHHHHccccccCeEEEEEEcC------CcHHHHH-HHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEE
Q 022962          201 VA--EMRILAEYCLPLVRVGGLFVAAKGH------DPQEEVK-NSERAVQLMGASLLQLCSVESQSPFGQRTAVVCL  268 (289)
Q Consensus       201 ~~--~~~~ll~~~~~~LkpgG~l~~~~g~------~~~~ei~-~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~  268 (289)
                      ..  ....+++++.++|||||+|++....      ...+++. ...+.+++. |++.+....   .+++..+++++.
T Consensus       135 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~---~p~~~~h~~~~~  207 (210)
T 1nt2_A          135 AQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSL---MPYHRDHIFIHA  207 (210)
T ss_dssp             CSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEEC---TTTCTTEEEEEE
T ss_pred             cChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecC---CCCCCCcEEEEE
Confidence            32  2345689999999999999987411      1223331 222336677 988887654   244444544443

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.75  E-value=3e-17  Score=139.42  Aligned_cols=121  Identities=14%  Similarity=0.101  Sum_probs=100.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||+|||+|.+++.++. .+..+|+|+|+|+.+++.|+++++..++.+++++++|+.+..     +++||+|+++..
T Consensus        61 ~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~fD~i~~~~~  134 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV-----DGKFDLIVANIL  134 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC-----CSCEEEEEEESC
T ss_pred             CCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC-----CCCceEEEECCc
Confidence            67999999999999999886 466799999999999999999999999878999999997753     278999999864


Q ss_pred             -ccHHHHHHHHccccccCeEEEEEE-cCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          202 -AEMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       202 -~~~~~ll~~~~~~LkpgG~l~~~~-g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                       ..+..+++++.++|+|||++++.. .....++   +.+.++..||.++++.
T Consensus       135 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~---~~~~~~~~Gf~~~~~~  183 (205)
T 3grz_A          135 AEILLDLIPQLDSHLNEDGQVIFSGIDYLQLPK---IEQALAENSFQIDLKM  183 (205)
T ss_dssp             HHHHHHHGGGSGGGEEEEEEEEEEEEEGGGHHH---HHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEecCcccHHH---HHHHHHHcCCceEEee
Confidence             456889999999999999999853 3333444   4456678999888765

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.75  E-value=2.6e-17  Score=143.57  Aligned_cols=133  Identities=17%  Similarity=0.129  Sum_probs=103.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +++|.+|||+|||+|..+..+|... |.++|+|+|++++|++.++++++..  .|+..+.+|+.+........+++|+|+
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~~~~~~~vDvVf  152 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKYRHLVEGVDGLY  152 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCccccccccceEEEEE
Confidence            4569999999999999999999874 8899999999999999999887654  489999998876543323357899999


Q ss_pred             EcC--cccHHHHHHHHccccccCeEEEEEEcC-------CcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          198 ARA--VAEMRILAEYCLPLVRVGGLFVAAKGH-------DPQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       198 sn~--~~~~~~ll~~~~~~LkpgG~l~~~~g~-------~~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      +.-  ..+...++.++.++|||||++++..-.       .....+....+.++..||++.+...+
T Consensus       153 ~d~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L  217 (233)
T 4df3_A          153 ADVAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHL  217 (233)
T ss_dssp             ECCCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EeccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEcc
Confidence            863  235578999999999999999875311       12233444556678899999888765

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.75  E-value=5.2e-17  Score=140.97  Aligned_cols=127  Identities=12%  Similarity=0.049  Sum_probs=103.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +++.+|||||||+|++++.+|+..|..+|+|+|+|+.+++.|++|++.+|+++ |+++++|..+.-..   .++||+|+.
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~---~~~~D~Ivi   90 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE---TDQVSVITI   90 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---GGCCCEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc---CcCCCEEEE
Confidence            35789999999999999999998888899999999999999999999999974 99999999653221   136998886


Q ss_pred             cCc-c-cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          199 RAV-A-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       199 n~~-~-~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      ..+ . -+..+++.+...|+++|+|++.. ....+.+..   .+...||.+.+...+
T Consensus        91 aG~Gg~~i~~Il~~~~~~L~~~~~lVlq~-~~~~~~vr~---~L~~~Gf~i~~e~lv  143 (225)
T 3kr9_A           91 AGMGGRLIARILEEGLGKLANVERLILQP-NNREDDLRI---WLQDHGFQIVAESIL  143 (225)
T ss_dssp             EEECHHHHHHHHHHTGGGCTTCCEEEEEE-SSCHHHHHH---HHHHTTEEEEEEEEE
T ss_pred             cCCChHHHHHHHHHHHHHhCCCCEEEEEC-CCCHHHHHH---HHHHCCCEEEEEEEE
Confidence            543 2 37899999999999999998744 455555544   566899999887655

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.74  E-value=2.8e-17  Score=144.03  Aligned_cols=130  Identities=13%  Similarity=0.177  Sum_probs=105.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .++.+|||||||+|.++..++...+. +|+|+|+|+.+++.+++++...++.+ ++++++|+.+++..   +++||+|++
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~fD~v~~  120 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ---NEELDLIWS  120 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC---TTCEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC---CCCEEEEEe
Confidence            34789999999999999999998764 99999999999999999999999875 99999999887643   378999999


Q ss_pred             cCc---ccHHHHHHHHccccccCeEEEEEEc----CCcHH--------------HHHHHHHHHHHhCCeEeEEeee
Q 022962          199 RAV---AEMRILAEYCLPLVRVGGLFVAAKG----HDPQE--------------EVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       199 n~~---~~~~~ll~~~~~~LkpgG~l~~~~g----~~~~~--------------ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      +.+   .+...+++++.++|||||++++...    .....              ...++.+.++.+||.+++...+
T Consensus       121 ~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  196 (257)
T 3f4k_A          121 EGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFIL  196 (257)
T ss_dssp             ESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEEEC
T ss_pred             cChHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence            842   2688999999999999999998642    11111              1234566778999998886543

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.74  E-value=2.2e-17  Score=146.36  Aligned_cols=131  Identities=14%  Similarity=0.170  Sum_probs=108.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++...|+.+|+|+|+|+.+++.+++++...++.+++++++|+.+++..   +++||+|+++.
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~---~~~fD~v~~~~  113 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFE---DSSFDHIFVCF  113 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSC---TTCEEEEEEES
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCC---CCCeeEEEEec
Confidence            478999999999999999999988999999999999999999999999988999999999987643   37899999984


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEcCC--------cHHH--------------------HHHHHHHHHHhCCeEe
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKGHD--------PQEE--------------------VKNSERAVQLMGASLL  248 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g~~--------~~~e--------------------i~~~~~~l~~~g~~~~  248 (289)
                          +.+...+++++.++|||||++++.....        ....                    ...+...++.+||..+
T Consensus       114 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v  193 (276)
T 3mgg_A          114 VLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKI  193 (276)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEE
T ss_pred             hhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeE
Confidence                4577899999999999999999865211        0000                    1234557889999988


Q ss_pred             EEeeee
Q 022962          249 QLCSVE  254 (289)
Q Consensus       249 ~~~~~~  254 (289)
                      ++....
T Consensus       194 ~~~~~~  199 (276)
T 3mgg_A          194 RVEPRM  199 (276)
T ss_dssp             EEEEEE
T ss_pred             EEeeEE
Confidence            887553

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.74  E-value=7.2e-17  Score=140.41  Aligned_cols=127  Identities=9%  Similarity=0.009  Sum_probs=104.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +++.+|+|||||+|++++.+|+..|..+|+|+|+++.+++.|++|++.+|+.+ |++.++|..+...+   .++||+|+.
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~---~~~~D~Ivi   96 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE---ADNIDTITI   96 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---GGCCCEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc---ccccCEEEE
Confidence            35789999999999999999988778899999999999999999999999975 99999999876532   137999874


Q ss_pred             cC-c-ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          199 RA-V-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       199 n~-~-~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      .+ . .-+..+++.....|+++|+|++ .+....+.+.   +.+.+.||.+.+...+
T Consensus        97 aGmGg~lI~~IL~~~~~~l~~~~~lIl-qp~~~~~~lr---~~L~~~Gf~i~~E~lv  149 (230)
T 3lec_A           97 CGMGGRLIADILNNDIDKLQHVKTLVL-QPNNREDDLR---KWLAANDFEIVAEDIL  149 (230)
T ss_dssp             EEECHHHHHHHHHHTGGGGTTCCEEEE-EESSCHHHHH---HHHHHTTEEEEEEEEE
T ss_pred             eCCchHHHHHHHHHHHHHhCcCCEEEE-ECCCChHHHH---HHHHHCCCEEEEEEEE
Confidence            43 3 3478999999999999999876 4444555554   4566899999988765

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.74  E-value=2.3e-17  Score=145.86  Aligned_cols=129  Identities=16%  Similarity=0.160  Sum_probs=105.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.+++.++.. +..+|+|+|+|+.+++.++++++..++. +++++++|+.+++..   +++||+|+++
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~i~~~  121 (267)
T 3kkz_A           46 EKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR---NEELDLIWSE  121 (267)
T ss_dssp             TTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC---TTCEEEEEES
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCC---CCCEEEEEEc
Confidence            4789999999999999999976 7789999999999999999999999885 599999999887643   3789999998


Q ss_pred             Cc---ccHHHHHHHHccccccCeEEEEEEc----CCcHH--------------HHHHHHHHHHHhCCeEeEEeee
Q 022962          200 AV---AEMRILAEYCLPLVRVGGLFVAAKG----HDPQE--------------EVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       200 ~~---~~~~~ll~~~~~~LkpgG~l~~~~g----~~~~~--------------ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      .+   .++..+++++.++|||||++++...    .....              ...++.+.++++||.++++..+
T Consensus       122 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  196 (267)
T 3kkz_A          122 GAIYNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFIL  196 (267)
T ss_dssp             SCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEEC
T ss_pred             CCceecCHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEEC
Confidence            52   2678999999999999999998642    11111              1234566788999998887654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.74  E-value=5.6e-17  Score=140.70  Aligned_cols=145  Identities=18%  Similarity=0.130  Sum_probs=105.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.+++.+|...+..+|+|+|+|+.+++.++++++..  .|+.++++|+.+......+.++||+|+...
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~  151 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVDVIYEDV  151 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTSCCEEEEEECC
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccCccEEEEEEec
Confidence            478999999999999999999877789999999999999999987765  589999999987211001236899999653


Q ss_pred             cc--cHHHHHHHHccccccCeEEEEEEc---CCc---HHH-H-HHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962          201 VA--EMRILAEYCLPLVRVGGLFVAAKG---HDP---QEE-V-KNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  270 (289)
Q Consensus       201 ~~--~~~~ll~~~~~~LkpgG~l~~~~g---~~~---~~e-i-~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~  270 (289)
                      ..  ....+++++.++|||||++++...   ...   ... . .++. .+...||.+++...+.  ........++++|+
T Consensus       152 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~--~~~~~~~~v~~~k~  228 (230)
T 1fbn_A          152 AQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIE--PFEKDHVMFVGIWE  228 (230)
T ss_dssp             CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECT--TTSTTEEEEEEEEC
T ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccC--CCccceEEEEEEeC
Confidence            21  237789999999999999998521   111   111 1 2333 6778899988876542  12244566666664

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.74  E-value=1.7e-17  Score=145.27  Aligned_cols=126  Identities=14%  Similarity=0.148  Sum_probs=103.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|..+..++... +.+|+|+|+|+.+++.++++++..++. +++++++|+++++.    +++||+|+++
T Consensus        36 ~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~V~~~  110 (256)
T 1nkv_A           36 PGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA----NEKCDVAACV  110 (256)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC----SSCEEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc----CCCCCEEEEC
Confidence            47899999999999999999876 679999999999999999999998885 79999999998754    3789999987


Q ss_pred             C----cccHHHHHHHHccccccCeEEEEEEcC----CcHH---------------HHHHHHHHHHHhCCeEeEEe
Q 022962          200 A----VAEMRILAEYCLPLVRVGGLFVAAKGH----DPQE---------------EVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~g~----~~~~---------------ei~~~~~~l~~~g~~~~~~~  251 (289)
                      .    ..+...+++++.++|||||++++....    ....               ...++.+.++++||..+++.
T Consensus       111 ~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  185 (256)
T 1nkv_A          111 GATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMV  185 (256)
T ss_dssp             SCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred             CChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEEE
Confidence            4    346789999999999999999986421    1111               12345667788999887764

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.74  E-value=2.3e-17  Score=145.21  Aligned_cols=128  Identities=16%  Similarity=0.195  Sum_probs=103.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++...  .+|+|+|+|+.+++.++++++..++.+++++++|+++++..   +++||+|+++.
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~---~~~fD~V~~~~  111 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT---DERFHIVTCRI  111 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC---TTCEEEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC---CCCEEEEEEhh
Confidence            47899999999999999998774  49999999999999999999998888999999999987643   37899999984


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEc--CCcH--------------------HHHHHHHHHHHHhCCeEeEEeee
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKG--HDPQ--------------------EEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g--~~~~--------------------~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                          +.+...+++++.++|||||++++...  +...                    ....++.+.++..||.+..+...
T Consensus       112 ~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  190 (260)
T 1vl5_A          112 AAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCF  190 (260)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred             hhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence                45778999999999999999998531  1110                    01134556778899998777654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.74  E-value=1.2e-18  Score=147.97  Aligned_cols=143  Identities=16%  Similarity=0.170  Sum_probs=90.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-CcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.+++.++...++.+|+|+|+|+.+++.+++++..++. +++++++|+.+.... ....++||+|++|
T Consensus        30 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~fD~i~~n  108 (215)
T 4dzr_A           30 SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAERGRPWHAIVSN  108 (215)
T ss_dssp             TTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred             CCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence            47899999999999999999998889999999999999999999998887 899999999873210 0012689999997


Q ss_pred             Cc----c--------------------------cHHHHHHHHccccccCeE-EEEEEcCCcHHHHHHHHHHHH--HhCCe
Q 022962          200 AV----A--------------------------EMRILAEYCLPLVRVGGL-FVAAKGHDPQEEVKNSERAVQ--LMGAS  246 (289)
Q Consensus       200 ~~----~--------------------------~~~~ll~~~~~~LkpgG~-l~~~~g~~~~~ei~~~~~~l~--~~g~~  246 (289)
                      ..    .                          .+..+++.+.++|||||+ +++..+....+++..   .+.  ..||.
T Consensus       109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---~l~~~~~gf~  185 (215)
T 4dzr_A          109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVAR---LFAPWRERGF  185 (215)
T ss_dssp             CCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHH---HTGGGGGGTE
T ss_pred             CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHH---HHHHhhcCCc
Confidence            21    0                          127889999999999999 777777666666544   455  67887


Q ss_pred             EeEEeeeecCCCCCceEEEEEEecC
Q 022962          247 LLQLCSVESQSPFGQRTAVVCLKSR  271 (289)
Q Consensus       247 ~~~~~~~~~~~~~~~r~lv~~~k~~  271 (289)
                      .+++..    ...+....++.++..
T Consensus       186 ~~~~~~----~~~~~~r~~~~~~~~  206 (215)
T 4dzr_A          186 RVRKVK----DLRGIDRVIAVTREP  206 (215)
T ss_dssp             ECCEEE----CTTSCEEEEEEEECC
T ss_pred             eEEEEE----ecCCCEEEEEEEEcC
Confidence            666542    334444555555543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.74  E-value=1.3e-16  Score=139.89  Aligned_cols=127  Identities=9%  Similarity=0.016  Sum_probs=103.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +++.+|||||||+|++++.+|+..|..+|+|+|+|+.+++.|++|++.+|+.+ |++.++|..+...+   .++||+|++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~---~~~~D~Ivi   96 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK---KDAIDTIVI   96 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---GGCCCEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc---cccccEEEE
Confidence            35789999999999999999988778899999999999999999999999975 99999999876432   136999875


Q ss_pred             c-Ccc-cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          199 R-AVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       199 n-~~~-~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      . .-. -+..+++.+...|+++|+|++. +....+.+.   +.+.+.||.+.+...+
T Consensus        97 agmGg~lI~~IL~~~~~~L~~~~~lIlq-~~~~~~~lr---~~L~~~Gf~i~~E~lv  149 (244)
T 3gnl_A           97 AGMGGTLIRTILEEGAAKLAGVTKLILQ-PNIAAWQLR---EWSEQNNWLITSEAIL  149 (244)
T ss_dssp             EEECHHHHHHHHHHTGGGGTTCCEEEEE-ESSCHHHHH---HHHHHHTEEEEEEEEE
T ss_pred             eCCchHHHHHHHHHHHHHhCCCCEEEEE-cCCChHHHH---HHHHHCCCEEEEEEEE
Confidence            4 333 4789999999999999998864 444555554   4566899999887655

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.73  E-value=3.7e-17  Score=146.29  Aligned_cols=125  Identities=16%  Similarity=0.168  Sum_probs=104.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +++.+|||+|||+|.+++.+|...+. +|+|+|+|+.+++.|++|++.+++++ ++++++|+.++..    +++||+|++
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~----~~~fD~Vi~  198 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----ENIADRILM  198 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----CSCEEEEEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc----cCCccEEEE
Confidence            45889999999999999999988544 89999999999999999999999876 9999999998764    378999999


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEEEcC----CcHHHHHHHHHHHHHhCCeEeE
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAAKGH----DPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~~g~----~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                      +.......+++.+.++|+|||.+++....    ........+.+.++..|+.+..
T Consensus       199 ~~p~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          199 GYVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             CCCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             CCchhHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence            98777788999999999999999986532    1123344556677789998765

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.73  E-value=3.1e-17  Score=141.86  Aligned_cols=99  Identities=20%  Similarity=0.349  Sum_probs=86.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++...|+.+|+|+|+|+.+++.++++....+  +++++++|+.+++..    ++||+|+++.
T Consensus        44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~----~~fD~v~~~~  117 (234)
T 3dtn_A           44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE----EKYDMVVSAL  117 (234)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC----SCEEEEEEES
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC----CCceEEEEeC
Confidence            3789999999999999999999989999999999999999999876655  899999999987643    7899999984


Q ss_pred             c----cc--HHHHHHHHccccccCeEEEEEE
Q 022962          201 V----AE--MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ~----~~--~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +    .+  ...+++++.++|||||.+++..
T Consensus       118 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          118 SIHHLEDEDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            2    22  3369999999999999999865

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.73  E-value=1.4e-17  Score=149.77  Aligned_cols=144  Identities=13%  Similarity=0.083  Sum_probs=104.5

Q ss_pred             CCCCCCeEEEEcCCCChHH-HHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          118 SCNSNLKLVDVGTGAGLPG-LVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~-l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      .++++.+|||||||+|.++ +.+| ..++++|+|||+|+++++.|+++++..|+++++++++|+.+++     +++||+|
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA-~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~-----d~~FDvV  192 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLS-HVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID-----GLEFDVL  192 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHH-HTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-----GCCCSEE
T ss_pred             CCCCcCEEEEECCCccHHHHHHHH-HccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-----CCCcCEE
Confidence            3456899999999998665 4555 4568999999999999999999999989888999999999875     2789999


Q ss_pred             EEcCc-ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962          197 VARAV-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  270 (289)
Q Consensus       197 ~sn~~-~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~  270 (289)
                      ++.+. .+...+++++.++|||||++++........-+..........||.....   .+|........++++|.
T Consensus       193 ~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~gf~~~~~---~~p~~~v~N~vv~a~k~  264 (298)
T 3fpf_A          193 MVAALAEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAGV---VLPSGKVNNTSVLVFKC  264 (298)
T ss_dssp             EECTTCSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGTTEEEEEE---ECCCTTCCCEEEEEEEC
T ss_pred             EECCCccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhhhhhheeE---ECCCCCcCcEEEEEEcc
Confidence            98754 5788999999999999999998664321110000000001247765433   34555555666666554

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.73  E-value=8.9e-17  Score=132.78  Aligned_cols=127  Identities=15%  Similarity=0.080  Sum_probs=102.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.+++.++..+|+.+|+|+|+|+.+++.|+++++.++++ ++ ++++|+.+.-.  ...++||+|+++
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~--~~~~~~D~i~~~  101 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFD--DVPDNPDVIFIG  101 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGG--GCCSCCSEEEEC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhh--ccCCCCCEEEEC
Confidence            367999999999999999998888899999999999999999999999987 79 88888854211  112689999998


Q ss_pred             CcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEee
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~  252 (289)
                      .......+++.+.++|+|||++++....  .+....+...++..|+.+.++..
T Consensus       102 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  152 (178)
T 3hm2_A          102 GGLTAPGVFAAAWKRLPVGGRLVANAVT--VESEQMLWALRKQFGGTISSFAI  152 (178)
T ss_dssp             C-TTCTTHHHHHHHTCCTTCEEEEEECS--HHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             CcccHHHHHHHHHHhcCCCCEEEEEeec--cccHHHHHHHHHHcCCeeEEEEe
Confidence            7555588999999999999999876532  33444556677788988776653

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.73  E-value=4.9e-17  Score=141.67  Aligned_cols=128  Identities=13%  Similarity=0.200  Sum_probs=103.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++...  .+|+|+|+|+.+++.+++++...++.+++++++|+++++..   +++||+|+++.
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~v~~~~   95 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP---DDSFDIITCRY   95 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC---TTCEEEEEEES
T ss_pred             CCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCC---CCcEEEEEECC
Confidence            57899999999999999998764  59999999999999999999998888999999999987643   37899999984


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEcCC-cHH---------------------HHHHHHHHHHHhCCeEeEEeee
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKGHD-PQE---------------------EVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g~~-~~~---------------------ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                          +.+...+++++.++|||||++++..... ...                     ...++.+.++.+||.++++...
T Consensus        96 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~  174 (239)
T 1xxl_A           96 AAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKW  174 (239)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred             chhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEEee
Confidence                3578899999999999999999864211 001                     1234556677899988777654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.72  E-value=1.7e-16  Score=137.48  Aligned_cols=96  Identities=11%  Similarity=0.108  Sum_probs=84.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.++++....+. +++++++|+.+++.    .++||+|+++. 
T Consensus        38 ~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~----~~~fD~v~~~~~  110 (246)
T 1y8c_A           38 FDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI----NRKFDLITCCLD  110 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC----SCCEEEEEECTT
T ss_pred             CCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc----cCCceEEEEcCc
Confidence            679999999999999998876  57999999999999999999988876 79999999988754    26899999975 


Q ss_pred             ----c---ccHHHHHHHHccccccCeEEEEE
Q 022962          201 ----V---AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       201 ----~---~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                          +   .+...+++++.++|+|||.+++.
T Consensus       111 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             GGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                2   45789999999999999999973

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.72  E-value=3.6e-17  Score=147.18  Aligned_cols=150  Identities=17%  Similarity=0.144  Sum_probs=103.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC------------------------------
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL------------------------------  170 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l------------------------------  170 (289)
                      ++.+|||||||+|.+++.+|..++..+|+|||+|+.+++.|+++++..+.                              
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            37899999999999999999998889999999999999999998765442                              


Q ss_pred             ----------------------------CCEEEEeccccccCCC--CcCCCCceEEEEcCcc----------cHHHHHHH
Q 022962          171 ----------------------------LNVQIVRGRAETLGKD--VSFREQYDVAVARAVA----------EMRILAEY  210 (289)
Q Consensus       171 ----------------------------~ni~~~~~d~~~~~~~--~~~~~~fD~V~sn~~~----------~~~~ll~~  210 (289)
                                                  .||+++++|+.+....  ....++||+|+|+.+-          .+..++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                        3799999999754310  0124789999998753          67789999


Q ss_pred             HccccccCeEEEEEEcCC--------cHHHH-----------HHHHHHHHH--hCCeEeEEeeeec-CCCCCceEEEEEE
Q 022962          211 CLPLVRVGGLFVAAKGHD--------PQEEV-----------KNSERAVQL--MGASLLQLCSVES-QSPFGQRTAVVCL  268 (289)
Q Consensus       211 ~~~~LkpgG~l~~~~g~~--------~~~ei-----------~~~~~~l~~--~g~~~~~~~~~~~-~~~~~~r~lv~~~  268 (289)
                      +.++|+|||+|+++....        ..+++           .++...+..  .||+.+++..... ....-.|.+.+++
T Consensus       206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~~~~~~~g~~r~i~~~~  285 (292)
T 3g07_A          206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVYLFH  285 (292)
T ss_dssp             HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC-----------CCCEEEE
T ss_pred             HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEeccCCCCCCCccceEEEEE
Confidence            999999999999864211        01111           123445666  8998777654321 1122345667777


Q ss_pred             ec
Q 022962          269 KS  270 (289)
Q Consensus       269 k~  270 (289)
                      |.
T Consensus       286 k~  287 (292)
T 3g07_A          286 KA  287 (292)
T ss_dssp             CC
T ss_pred             cC
Confidence            65

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.72  E-value=1.5e-16  Score=143.06  Aligned_cols=98  Identities=16%  Similarity=0.239  Sum_probs=84.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC---CCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL---LNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l---~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|++++...++   .+++++++|+.+++.    +++||+|++
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~  156 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL----DKRFGTVVI  156 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC----SCCEEEEEE
T ss_pred             CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc----CCCcCEEEE
Confidence            459999999999999999876  57999999999999999999988764   579999999998764    378999986


Q ss_pred             cC-----c--ccHHHHHHHHccccccCeEEEEEE
Q 022962          199 RA-----V--AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       199 n~-----~--~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..     .  .+...+++++.++|+|||+|++..
T Consensus       157 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  190 (299)
T 3g2m_A          157 SSGSINELDEADRRGLYASVREHLEPGGKFLLSL  190 (299)
T ss_dssp             CHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            51     1  246899999999999999999864

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.71  E-value=1.4e-16  Score=135.68  Aligned_cols=138  Identities=16%  Similarity=0.159  Sum_probs=104.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.++++.      +++++++|+.+++.    +++||+|+++.
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~----~~~fD~v~~~~  110 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLDA----IDAYDAVWAHA  110 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC----CSCEEEEEECS
T ss_pred             CCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCCC----CCcEEEEEecC
Confidence            3779999999999999999876  679999999999999999876      46778899988762    47899999985


Q ss_pred             c----c--cHHHHHHHHccccccCeEEEEEEcCCcH------------HHHHHHHHHHHHhC-CeEeEEeeeecCCCCC-
Q 022962          201 V----A--EMRILAEYCLPLVRVGGLFVAAKGHDPQ------------EEVKNSERAVQLMG-ASLLQLCSVESQSPFG-  260 (289)
Q Consensus       201 ~----~--~~~~ll~~~~~~LkpgG~l~~~~g~~~~------------~ei~~~~~~l~~~g-~~~~~~~~~~~~~~~~-  260 (289)
                      +    .  ++..+++++.++|||||++++.......            ....++.+.++.+| |+++++.........+ 
T Consensus       111 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~~  190 (211)
T 3e23_A          111 CLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQE  190 (211)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECTTSC
T ss_pred             chhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCCCCC
Confidence            2    2  6779999999999999999987532110            12344556677999 9999887665333332 


Q ss_pred             -ceEEEEEEec
Q 022962          261 -QRTAVVCLKS  270 (289)
Q Consensus       261 -~r~lv~~~k~  270 (289)
                       ...+.++.+.
T Consensus       191 ~~~wl~~~~~~  201 (211)
T 3e23_A          191 LAQFLHVSVRK  201 (211)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CceEEEEEEec
Confidence             3344555444

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.71  E-value=6.4e-17  Score=138.31  Aligned_cols=128  Identities=16%  Similarity=0.127  Sum_probs=97.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~sn~  200 (289)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.++++      .++.+.++|+.++.... ...++||+|+++.
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~  124 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPVGKDYDLICANF  124 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred             CCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccccCCCccEEEECc
Confidence            679999999999999998866  67999999999999999886      36778888888872211 1235699999985


Q ss_pred             ---cccHHHHHHHHccccccCeEEEEEEcCC-----------------------------cHHHHHHHHHHHHHhCCeEe
Q 022962          201 ---VAEMRILAEYCLPLVRVGGLFVAAKGHD-----------------------------PQEEVKNSERAVQLMGASLL  248 (289)
Q Consensus       201 ---~~~~~~ll~~~~~~LkpgG~l~~~~g~~-----------------------------~~~ei~~~~~~l~~~g~~~~  248 (289)
                         ..+...+++++.++|+|||++++.....                             ......++.+.++.+||.++
T Consensus       125 ~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  204 (227)
T 3e8s_A          125 ALLHQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV  204 (227)
T ss_dssp             CCCSSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEE
T ss_pred             hhhhhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEE
Confidence               3567899999999999999999865210                             00023556667789999999


Q ss_pred             EEeeeecCC
Q 022962          249 QLCSVESQS  257 (289)
Q Consensus       249 ~~~~~~~~~  257 (289)
                      ++.....+.
T Consensus       205 ~~~~~~~~~  213 (227)
T 3e8s_A          205 SLQEPQHPQ  213 (227)
T ss_dssp             EEECCCCTT
T ss_pred             EEecCCCCC
Confidence            887543333

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.71  E-value=2e-16  Score=138.02  Aligned_cols=145  Identities=14%  Similarity=0.062  Sum_probs=99.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +++.+|||+|||+|..+..+|.. .+.++|+|+|+|+.|+..+.+.++..  .|+.++++|+..........++||+|++
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~I~~  152 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDVLYV  152 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEEEEe
Confidence            45899999999999999999976 46789999999999986666655543  4899999999865321122468999999


Q ss_pred             cCc-ccHHH-HHHHHccccccCeEEEEEEcC-------CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceE-EEEEE
Q 022962          199 RAV-AEMRI-LAEYCLPLVRVGGLFVAAKGH-------DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRT-AVVCL  268 (289)
Q Consensus       199 n~~-~~~~~-ll~~~~~~LkpgG~l~~~~g~-------~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~-lv~~~  268 (289)
                      +.. .+... +...+.++|||||+|++..-.       +..+-.....+.++..||++.+...+   .|+...+ +++.+
T Consensus       153 d~a~~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l---~p~~~~h~~v~~~  229 (232)
T 3id6_C          153 DIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINL---DPYDKDHAIVLSK  229 (232)
T ss_dssp             CCCCTTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEEC---TTTCSSCEEEEEE
T ss_pred             cCCChhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEecc---CCCcCceEEEEEE
Confidence            953 34444 445666699999999976311       11111123344566889999988755   3444344 44444


Q ss_pred             e
Q 022962          269 K  269 (289)
Q Consensus       269 k  269 (289)
                      +
T Consensus       230 ~  230 (232)
T 3id6_C          230 Y  230 (232)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.71  E-value=4.4e-17  Score=140.87  Aligned_cols=106  Identities=14%  Similarity=0.097  Sum_probs=89.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||||||+|.+++.+|...|+..|+|||+|+.+++.|+++++..+++|++++++|+.++......+++||.|+++..
T Consensus        35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~  114 (218)
T 3dxy_A           35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFP  114 (218)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESC
T ss_pred             CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCC
Confidence            67999999999999999999999999999999999999999999999999999999999885110011478999999821


Q ss_pred             c------c------HHHHHHHHccccccCeEEEEEEcC
Q 022962          202 A------E------MRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       202 ~------~------~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      .      .      ...+++.+.++|||||.|++....
T Consensus       115 ~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~  152 (218)
T 3dxy_A          115 DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW  152 (218)
T ss_dssp             CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence            1      1      136999999999999999987753

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.71  E-value=2e-16  Score=142.45  Aligned_cols=126  Identities=11%  Similarity=0.044  Sum_probs=102.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.+++.++..++ .+|+|+|+|+.+++.|++++...++. +++++++|+.++      +++||+|+++
T Consensus        72 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~fD~v~~~  144 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF------DEPVDRIVSL  144 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC------CCCCSEEEEE
T ss_pred             CcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc------CCCccEEEEc
Confidence            578999999999999999998866 79999999999999999999999986 799999999876      2789999998


Q ss_pred             Cc-------------ccHHHHHHHHccccccCeEEEEEEcC-CcH-------------------------------HHHH
Q 022962          200 AV-------------AEMRILAEYCLPLVRVGGLFVAAKGH-DPQ-------------------------------EEVK  234 (289)
Q Consensus       200 ~~-------------~~~~~ll~~~~~~LkpgG~l~~~~g~-~~~-------------------------------~ei~  234 (289)
                      .+             .++..+++++.++|||||++++.... ...                               ....
T Consensus       145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~  224 (302)
T 3hem_A          145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRIS  224 (302)
T ss_dssp             SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHH
T ss_pred             chHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHH
Confidence            42             23479999999999999999976421 111                               0123


Q ss_pred             HHHHHHHHhCCeEeEEeee
Q 022962          235 NSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       235 ~~~~~l~~~g~~~~~~~~~  253 (289)
                      ++.+.++..||.+.++..+
T Consensus       225 ~~~~~l~~aGf~~~~~~~~  243 (302)
T 3hem_A          225 QVDYYSSNAGWKVERYHRI  243 (302)
T ss_dssp             HHHHHHHHHTCEEEEEEEC
T ss_pred             HHHHHHHhCCcEEEEEEeC
Confidence            4566778899998887644

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.71  E-value=9.8e-17  Score=145.34  Aligned_cols=131  Identities=14%  Similarity=0.081  Sum_probs=106.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.++.+|||||||+|.+++.++..+ +.+|+|+|+|+.+++.|+++++..++. +++++++|+++++..   +++||+|+
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~  190 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFD---KGAVTASW  190 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC---TTCEEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCC---CCCEeEEE
Confidence            3457899999999999999999875 579999999999999999999999986 799999999987643   37899999


Q ss_pred             EcCc---ccHHHHHHHHccccccCeEEEEEEcC--C-c------HH-----------HHHHHHHHHHHhCCeEeEEeee
Q 022962          198 ARAV---AEMRILAEYCLPLVRVGGLFVAAKGH--D-P------QE-----------EVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       198 sn~~---~~~~~ll~~~~~~LkpgG~l~~~~g~--~-~------~~-----------ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      ++.+   .++..+++++.++|||||++++....  . .      ..           ...++.+.++++||.++++..+
T Consensus       191 ~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~  269 (312)
T 3vc1_A          191 NNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDL  269 (312)
T ss_dssp             EESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred             ECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEeC
Confidence            9842   25899999999999999999976521  1 0      00           1244566788999998888754

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.71  E-value=2.4e-16  Score=136.76  Aligned_cols=131  Identities=18%  Similarity=0.132  Sum_probs=98.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.++..++... |..+|+|+|+|+.+++.+.++++..  .|++++++|+.+........++||+|+++
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence            47899999999999999999875 6789999999999998888888876  58999999998742111124689999998


Q ss_pred             Ccc--cHHHHHHHHccccccCeEEEEEEcCC-------cHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          200 AVA--EMRILAEYCLPLVRVGGLFVAAKGHD-------PQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       200 ~~~--~~~~ll~~~~~~LkpgG~l~~~~g~~-------~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      ...  ....++.++.++|||||++++.....       ....+..-.+.+++.||.+.+...+
T Consensus       155 ~~~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  217 (233)
T 2ipx_A          155 VAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTL  217 (233)
T ss_dssp             CCCTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEEC
T ss_pred             CCCccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEec
Confidence            542  23567888999999999999864321       1111222245677889998886654

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.71  E-value=3e-16  Score=138.73  Aligned_cols=129  Identities=19%  Similarity=0.178  Sum_probs=104.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.++..++... +.+|+|+|+|+.+++.+++++...++. +++++++|+.+++..   +++||+|+++
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~fD~v~~~  136 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE---DASFDAVWAL  136 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC---TTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC---CCCccEEEEe
Confidence            47899999999999999999876 689999999999999999999998875 699999999987643   3789999987


Q ss_pred             C----cccHHHHHHHHccccccCeEEEEEEc----CCcHH------------------HHHHHHHHHHHhCCeEeEEeee
Q 022962          200 A----VAEMRILAEYCLPLVRVGGLFVAAKG----HDPQE------------------EVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~g----~~~~~------------------ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      .    +.+...+++++.++|||||++++...    .....                  ...++.+.++++||.++++..+
T Consensus       137 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  216 (273)
T 3bus_A          137 ESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDI  216 (273)
T ss_dssp             SCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             chhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEEC
Confidence            4    45788999999999999999997641    11110                  1134566778899998877654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.70  E-value=2.4e-16  Score=131.44  Aligned_cols=122  Identities=15%  Similarity=0.078  Sum_probs=97.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn-  199 (289)
                      ++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.++++.     .+++++++|+.+++..   +++||+|+++ 
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~~---~~~~D~i~~~~  115 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQIS---ETDFDLIVSAG  115 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCCC---CCCEEEEEECC
T ss_pred             CCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCCC---CCceeEEEECC
Confidence            3779999999999999999876  579999999999999998864     3689999999886542   3689999997 


Q ss_pred             Cc------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEee
Q 022962          200 AV------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       200 ~~------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~  252 (289)
                      .+      .+...+++.+.++|+|||.+++..+........++.+.++..||.+.++..
T Consensus       116 ~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  174 (195)
T 3cgg_A          116 NVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFE  174 (195)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEES
T ss_pred             cHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeec
Confidence            32      345789999999999999999877554322334455667789999887754

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.70  E-value=3e-16  Score=139.84  Aligned_cols=126  Identities=13%  Similarity=0.148  Sum_probs=104.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHc-CCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLT-QLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~-~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      .++.+|||+|||+|.+++.++.. .|+.+|+++|+++.+++.|+++++.+ |.++++++++|+.+...    +++||+|+
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~----~~~fD~Vi  184 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS----DQMYDAVI  184 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC----SCCEEEEE
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc----CCCccEEE
Confidence            35789999999999999999987 67899999999999999999999988 87789999999987321    36899999


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEee
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~  252 (289)
                      ++. .+...+++.+.++|+|||++++....  .....++.+.++..||...+...
T Consensus       185 ~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~--~~~~~~~~~~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          185 ADI-PDPWNHVQKIASMMKPGSVATFYLPN--FDQSEKTVLSLSASGMHHLETVE  236 (275)
T ss_dssp             ECC-SCGGGSHHHHHHTEEEEEEEEEEESS--HHHHHHHHHHSGGGTEEEEEEEE
T ss_pred             EcC-cCHHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHCCCeEEEEEE
Confidence            964 45578999999999999999987653  23445556667788998877654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.70  E-value=1.4e-16  Score=140.59  Aligned_cols=134  Identities=17%  Similarity=0.086  Sum_probs=105.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .++.+|||+|||+|.+++.+++..  .+|+|+|+|+.+++.++++++.++++ ++++++|+.+...    +++||+|++|
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g--~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~----~~~fD~Vv~n  191 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALP----FGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGG----GCCEEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCc----CCCCCEEEEC
Confidence            457899999999999999988753  39999999999999999999999886 9999999887321    2689999999


Q ss_pred             Ccc-cHHHHHHHHccccccCeEEEEEE-cCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962          200 AVA-EMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       200 ~~~-~~~~ll~~~~~~LkpgG~l~~~~-g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      ... .+..+++.+.++|+|||++++.. ...+.+   .+.+.++..||.+.++..      .+.+..++++|
T Consensus       192 ~~~~~~~~~l~~~~~~LkpgG~lils~~~~~~~~---~v~~~l~~~Gf~~~~~~~------~~~W~~l~~~k  254 (254)
T 2nxc_A          192 LYAELHAALAPRYREALVPGGRALLTGILKDRAP---LVREAMAGAGFRPLEEAA------EGEWVLLAYGR  254 (254)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHH---HHHHHHHHTTCEEEEEEE------ETTEEEEEEEC
T ss_pred             CcHHHHHHHHHHHHHHcCCCCEEEEEeeccCCHH---HHHHHHHHCCCEEEEEec------cCCeEEEEEEC
Confidence            654 46789999999999999998743 223333   445567789999887753      24566666553

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.70  E-value=2.1e-16  Score=133.66  Aligned_cols=122  Identities=16%  Similarity=0.107  Sum_probs=97.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.++++     ..+++++++|+.+++..   +++||+|+++.+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~---~~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDLSDS---PKRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGGGS---CCCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccccccC---CCCeEEEEehhh
Confidence            579999999999999999876  56999999999999999886     34799999999987643   378999999742


Q ss_pred             ------ccHHHHHHHHccccccCeEEEEEEcCCc-------------HHHHHHHHHHHHHhCCeEeEEeee
Q 022962          202 ------AEMRILAEYCLPLVRVGGLFVAAKGHDP-------------QEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       202 ------~~~~~ll~~~~~~LkpgG~l~~~~g~~~-------------~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                            .+...+++++.++|+|||.+++......             .....++.+.++++||+++++...
T Consensus       112 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  182 (203)
T 3h2b_A          112 LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWD  182 (203)
T ss_dssp             STTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEEC
T ss_pred             HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEec
Confidence                  3788999999999999999998652211             011344555677999999988754

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.70  E-value=3.7e-16  Score=134.42  Aligned_cols=138  Identities=16%  Similarity=0.167  Sum_probs=106.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-----CEEEEeccccccCCCCcCCCCce
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-----NVQIVRGRAETLGKDVSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-----ni~~~~~d~~~~~~~~~~~~~fD  194 (289)
                      +++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.+++++...++.     +++++++|+.+++..   +++||
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D  103 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFH---DSSFD  103 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSC---TTCEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCC---CCcee
Confidence            35789999999999999999876  679999999999999999998877762     589999999987643   37899


Q ss_pred             EEEEcCc----ccHH---HHHHHHccccccCeEEEEEEcCC--------------------------------------c
Q 022962          195 VAVARAV----AEMR---ILAEYCLPLVRVGGLFVAAKGHD--------------------------------------P  229 (289)
Q Consensus       195 ~V~sn~~----~~~~---~ll~~~~~~LkpgG~l~~~~g~~--------------------------------------~  229 (289)
                      +|+++.+    .+..   .+++++.++|+|||.+++.....                                      .
T Consensus       104 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (235)
T 3sm3_A          104 FAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAH  183 (235)
T ss_dssp             EEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred             EEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeE
Confidence            9999842    2334   89999999999999999863210                                      0


Q ss_pred             HHHHHHHHHHHHHhCCeEeEEeeeecCCCCCce
Q 022962          230 QEEVKNSERAVQLMGASLLQLCSVESQSPFGQR  262 (289)
Q Consensus       230 ~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r  262 (289)
                      .-...++.+.++++||+++++.....+...+..
T Consensus       184 ~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~g~~  216 (235)
T 3sm3_A          184 HFTEKELVFLLTDCRFEIDYFRVKELETRTGNK  216 (235)
T ss_dssp             CBCHHHHHHHHHTTTEEEEEEEEEEEECTTSCE
T ss_pred             eCCHHHHHHHHHHcCCEEEEEEecceeeccCCc
Confidence            011344556777999999998766555444443

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.70  E-value=5.5e-16  Score=128.10  Aligned_cols=121  Identities=18%  Similarity=0.144  Sum_probs=101.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.+++.++.  +..+|+|+|+|+.+++.++++++.+++++++++++|+.+ ...   +++||+|+++.
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~---~~~~D~i~~~~  108 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLD---KLEFNKAFIGG  108 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGG---GCCCSEEEECS
T ss_pred             CCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-ccc---CCCCcEEEECC
Confidence            377999999999999999987  688999999999999999999999998889999999987 222   26899999997


Q ss_pred             cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          201 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 ~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      ..+...+++.+.++  |||.+++...  ......++.+.+++.|+.+..+.
T Consensus       109 ~~~~~~~l~~~~~~--~gG~l~~~~~--~~~~~~~~~~~l~~~g~~~~~~~  155 (183)
T 2yxd_A          109 TKNIEKIIEILDKK--KINHIVANTI--VLENAAKIINEFESRGYNVDAVN  155 (183)
T ss_dssp             CSCHHHHHHHHHHT--TCCEEEEEES--CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cccHHHHHHHHhhC--CCCEEEEEec--ccccHHHHHHHHHHcCCeEEEEE
Confidence            78888999999988  9999998763  23455667778889998765543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.70  E-value=1.2e-16  Score=142.83  Aligned_cols=101  Identities=23%  Similarity=0.337  Sum_probs=89.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.++..++..+| +.+|+|+|+|+.+++.+++++...+. |++++++|+.+++.    +++||+|+++
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~----~~~fD~v~~~   96 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL----NDKYDIAICH   96 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC----SSCEEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCc----CCCeeEEEEC
Confidence            478999999999999999998887 48999999999999999999888776 89999999998754    3689999998


Q ss_pred             C----cccHHHHHHHHccccccCeEEEEEEc
Q 022962          200 A----VAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      .    +.+...+++++.++|||||++++...
T Consensus        97 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  127 (284)
T 3gu3_A           97 AFLLHMTTPETMLQKMIHSVKKGGKIICFEP  127 (284)
T ss_dssp             SCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ChhhcCCCHHHHHHHHHHHcCCCCEEEEEec
Confidence            5    45778999999999999999997654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.70  E-value=9.4e-17  Score=139.42  Aligned_cols=132  Identities=16%  Similarity=0.070  Sum_probs=100.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCC-hHHHHHH---HHHHHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESM-NKRCVFL---EHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s-~~~l~~a---~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ++.+|||||||+|.+++.+|+..++.+|+|||+| +.|++.|   ++++...++.|++++++|+++++..  +.+.+|.|
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~--~~d~v~~i  101 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFE--LKNIADSI  101 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGG--GTTCEEEE
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhh--ccCeEEEE
Confidence            4779999999999999999987889999999999 6666665   7777788888999999999998532  23678888


Q ss_pred             EEcCc---------ccHHHHHHHHccccccCeEEEEEEc--CC--------------cHHHHH--HHHHHHHHhCCeEeE
Q 022962          197 VARAV---------AEMRILAEYCLPLVRVGGLFVAAKG--HD--------------PQEEVK--NSERAVQLMGASLLQ  249 (289)
Q Consensus       197 ~sn~~---------~~~~~ll~~~~~~LkpgG~l~~~~g--~~--------------~~~ei~--~~~~~l~~~g~~~~~  249 (289)
                      .++..         .+...+++++.++|||||++++...  ..              ......  ++...+...||.+.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~  181 (225)
T 3p2e_A          102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDD  181 (225)
T ss_dssp             EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEE
T ss_pred             EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeee
Confidence            87731         1235789999999999999998221  10              001111  256678899999988


Q ss_pred             Eeeee
Q 022962          250 LCSVE  254 (289)
Q Consensus       250 ~~~~~  254 (289)
                      +..+.
T Consensus       182 ~~~~~  186 (225)
T 3p2e_A          182 VKELD  186 (225)
T ss_dssp             EEEEC
T ss_pred             eeecC
Confidence            87653

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.70  E-value=1.7e-16  Score=141.63  Aligned_cols=104  Identities=17%  Similarity=0.159  Sum_probs=93.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +.++.+|||+|||+|.+++.+|...+..+|+|+|+|+.+++.|++|++.++++|++++++|+.++ ..   .++||+|++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~---~~~~D~Vi~  192 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL---KDVADRVIM  192 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC---TTCEEEEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc---cCCceEEEE
Confidence            44688999999999999999999877789999999999999999999999998999999999987 32   368999999


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEEEc
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      +.......++..+.+.|+|||.+++...
T Consensus       193 d~p~~~~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          193 GYVHKTHKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             CCCSSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcccHHHHHHHHHHHcCCCCEEEEEEc
Confidence            9877788899999999999999997643

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.70  E-value=9.7e-17  Score=139.72  Aligned_cols=129  Identities=16%  Similarity=0.131  Sum_probs=100.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++... ..+|+|+|+|+.+++.++++....+..+++++++|+.+++..   +++||+|+++.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~---~~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPE---PDSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCC---SSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCC---CCCEEEEEEcc
Confidence            47899999999999999888664 569999999999999999988776545799999999887643   36899999985


Q ss_pred             c----cc--HHHHHHHHccccccCeEEEEEEcCC------------cHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          201 V----AE--MRILAEYCLPLVRVGGLFVAAKGHD------------PQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       201 ~----~~--~~~ll~~~~~~LkpgG~l~~~~g~~------------~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      +    .+  +..+++++.++|+|||++++.....            ......++.+.++++||.++++...
T Consensus       155 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  225 (241)
T 2ex4_A          155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ  225 (241)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence            3    22  5689999999999999999853210            0002344556677999999888654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.69  E-value=3.7e-16  Score=139.34  Aligned_cols=128  Identities=17%  Similarity=0.214  Sum_probs=103.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|++++...++ .+++++++|+.+++..  .+++||+|+++.
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~v~~~~  144 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH--LETPVDLILFHA  144 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG--CSSCEEEEEEES
T ss_pred             CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh--cCCCceEEEECc
Confidence            679999999999999999876  67999999999999999999998888 5799999999987621  247899999985


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEcCCcH-------------------------------HHHHHHHHHHHHhCC
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKGHDPQ-------------------------------EEVKNSERAVQLMGA  245 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~-------------------------------~ei~~~~~~l~~~g~  245 (289)
                          +.+...+++++.++|||||.+++.......                               -...++.+.++.+||
T Consensus       145 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf  224 (285)
T 4htf_A          145 VLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGW  224 (285)
T ss_dssp             CGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTC
T ss_pred             hhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCC
Confidence                457789999999999999999986521100                               011345667789999


Q ss_pred             eEeEEeee
Q 022962          246 SLLQLCSV  253 (289)
Q Consensus       246 ~~~~~~~~  253 (289)
                      +++++..+
T Consensus       225 ~v~~~~~~  232 (285)
T 4htf_A          225 QIMGKTGV  232 (285)
T ss_dssp             EEEEEEEE
T ss_pred             ceeeeeeE
Confidence            99988765

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.69  E-value=2.2e-17  Score=140.86  Aligned_cols=129  Identities=9%  Similarity=-0.104  Sum_probs=92.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc------------CCCCEEEEeccccccCCCCc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT------------QLLNVQIVRGRAETLGKDVS  188 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~------------~l~ni~~~~~d~~~~~~~~~  188 (289)
                      ++.+|||+|||+|..+..||..  +.+|+|||+|+.|++.|+++.+..            ...+++++++|+.+++... 
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~-   98 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD-   98 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH-
T ss_pred             CCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc-
Confidence            3789999999999999999987  679999999999999999875431            2347999999999876420 


Q ss_pred             CCCCceEEEEcCc------ccHHHHHHHHccccccCeEEEEEE-cCC--------cHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          189 FREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAAK-GHD--------PQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       189 ~~~~fD~V~sn~~------~~~~~ll~~~~~~LkpgG~l~~~~-g~~--------~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                       .++||+|+++..      .+...+++++.++|||||++++.. ...        ..-...++.+.+.. ||++..+...
T Consensus        99 -~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~~  176 (203)
T 1pjz_A           99 -IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQ  176 (203)
T ss_dssp             -HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred             -CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEeccc
Confidence             158999998742      235678999999999999844332 111        00012333444555 8887766654


Q ss_pred             e
Q 022962          254 E  254 (289)
Q Consensus       254 ~  254 (289)
                      +
T Consensus       177 ~  177 (203)
T 1pjz_A          177 D  177 (203)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.69  E-value=1.1e-15  Score=130.96  Aligned_cols=101  Identities=15%  Similarity=0.151  Sum_probs=85.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-----CEEEEeccccccCCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-----NVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-----ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      +.+|||||||+|.++..++...+..+|+|+|+|+.+++.+++++...++.     +++++++|+...+..   .++||+|
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V  106 (219)
T 3jwg_A           30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKR---FSGYDAA  106 (219)
T ss_dssp             CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGG---GTTCSEE
T ss_pred             CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccc---cCCCCEE
Confidence            67999999999999999998777789999999999999999998877764     799999999765532   3789999


Q ss_pred             EEcCc----c--cHHHHHHHHccccccCeEEEEEE
Q 022962          197 VARAV----A--EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       197 ~sn~~----~--~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +++.+    .  ....+++++.++|||||.++...
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A          107 TVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             EEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            99852    2  34789999999999999777543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.69  E-value=3.9e-16  Score=136.90  Aligned_cols=127  Identities=12%  Similarity=0.120  Sum_probs=102.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..+ +.+|+|+|+|+.+++.++++....  .+++++++|+.+++..   +++||+|+++.
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~---~~~fD~v~~~~  128 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFP---ENNFDLIYSRD  128 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCC---TTCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCC---CCcEEEEeHHH
Confidence            47899999999999999999876 679999999999999999876554  5899999999987543   37899999984


Q ss_pred             ----c--ccHHHHHHHHccccccCeEEEEEEc--CC---cHH--------------HHHHHHHHHHHhCCeEeEEeee
Q 022962          201 ----V--AEMRILAEYCLPLVRVGGLFVAAKG--HD---PQE--------------EVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       201 ----~--~~~~~ll~~~~~~LkpgG~l~~~~g--~~---~~~--------------ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                          +  .+...+++++.++|||||.+++...  ..   ...              ...++.+.++..||..+++..+
T Consensus       129 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  206 (266)
T 3ujc_A          129 AILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDL  206 (266)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             HHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEeC
Confidence                3  6788999999999999999998641  11   000              1244566778999998887644

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.69  E-value=2e-16  Score=135.43  Aligned_cols=101  Identities=15%  Similarity=0.166  Sum_probs=86.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-----CEEEEeccccccCCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-----NVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-----ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      +.+|||||||+|.++..++...+..+|+|+|+|+.+++.+++++...++.     +++++++|+...+..   .++||+|
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~v  106 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR---FHGYDAA  106 (217)
T ss_dssp             CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG---GCSCSEE
T ss_pred             CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc---CCCcCEE
Confidence            67999999999999999998777789999999999999999998887775     799999998765432   3689999


Q ss_pred             EEcCc----c--cHHHHHHHHccccccCeEEEEEE
Q 022962          197 VARAV----A--EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       197 ~sn~~----~--~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +++.+    .  ....+++++.++|||||.+++..
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A          107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            99852    2  45799999999999999877653

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.69  E-value=1.2e-16  Score=134.29  Aligned_cols=104  Identities=17%  Similarity=0.198  Sum_probs=88.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||+|||+|.+++.++. .+..+|+|+|+|+.+++.|+++++.+++++++++++|+.++.... .+++||+|+++..
T Consensus        45 ~~~vLDlgcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~fD~i~~~~p  122 (189)
T 3p9n_A           45 GLAVLDLYAGSGALGLEALS-RGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAG-TTSPVDLVLADPP  122 (189)
T ss_dssp             TCEEEEETCTTCHHHHHHHH-TTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHC-CSSCCSEEEECCC
T ss_pred             CCEEEEeCCCcCHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhc-cCCCccEEEECCC
Confidence            77999999999999998775 456799999999999999999999999888999999998864210 1378999999842


Q ss_pred             -----ccHHHHHHHHcc--ccccCeEEEEEEcC
Q 022962          202 -----AEMRILAEYCLP--LVRVGGLFVAAKGH  227 (289)
Q Consensus       202 -----~~~~~ll~~~~~--~LkpgG~l~~~~g~  227 (289)
                           ..+..+++.+.+  +|+|||.+++....
T Consensus       123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          123 YNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             CCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence                 457889999988  99999999997753

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.69  E-value=8.5e-16  Score=134.55  Aligned_cols=127  Identities=21%  Similarity=0.167  Sum_probs=104.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHc-CCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLT-QLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~-~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      .++.+|||+|||+|.+++.++.. .|..+|+++|+|+.+++.|+++++.. +.++++++++|+.+.+..   +++||+|+
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~---~~~~D~v~  171 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE---EAAYDGVA  171 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC---TTCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC---CCCcCEEE
Confidence            35789999999999999999987 57889999999999999999999888 777899999999886432   26899999


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEee
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~  252 (289)
                      ++. .+...+++.+.++|+|||++++....  .+.+.++.+.++..||...+...
T Consensus       172 ~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          172 LDL-MEPWKVLEKAALALKPDRFLVAYLPN--ITQVLELVRAAEAHPFRLERVLE  223 (258)
T ss_dssp             EES-SCGGGGHHHHHHHEEEEEEEEEEESC--HHHHHHHHHHHTTTTEEEEEEEE
T ss_pred             ECC-cCHHHHHHHHHHhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCceEEEEE
Confidence            964 44558899999999999999987753  24455666677788988766543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.69  E-value=1.6e-16  Score=143.41  Aligned_cols=142  Identities=17%  Similarity=0.139  Sum_probs=108.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHH-HHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLA-IACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la-~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      .++.+|||||||+|..++.+| ...|+.+|+|+|+|+.+++.|++++...++.+ ++++++|+.+++.    +++||+|+
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~  192 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT----REGYDLLT  192 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC----CSCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc----cCCeEEEE
Confidence            357899999999999999886 45688999999999999999999999888764 9999999998754    27899999


Q ss_pred             EcCc----ccH---HHHHHHHccccccCeEEEEEEcC--------C--------c--------------------HHHHH
Q 022962          198 ARAV----AEM---RILAEYCLPLVRVGGLFVAAKGH--------D--------P--------------------QEEVK  234 (289)
Q Consensus       198 sn~~----~~~---~~ll~~~~~~LkpgG~l~~~~g~--------~--------~--------------------~~ei~  234 (289)
                      ++.+    .+.   ..+++++.++|||||++++..-.        .        .                    .....
T Consensus       193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
T 3ocj_A          193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA  272 (305)
T ss_dssp             CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred             ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence            9852    233   34899999999999999976410        0        0                    01234


Q ss_pred             HHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962          235 NSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       235 ~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      ++.+.++.+||+.+++...    ..+....++.+|
T Consensus       273 ~~~~~l~~aGF~~v~~~~~----~~~~~~~v~a~K  303 (305)
T 3ocj_A          273 QTRAQLEEAGFTDLRFEDD----RARLFPTVIARK  303 (305)
T ss_dssp             HHHHHHHHTTCEEEEEECC----TTSSSCEEEEEC
T ss_pred             HHHHHHHHCCCEEEEEEcc----cCceeeEEEEec
Confidence            5566788999998887632    233344555554

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.69  E-value=2.4e-16  Score=137.74  Aligned_cols=121  Identities=18%  Similarity=0.124  Sum_probs=94.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH------cCCCCEEEEeccccc-cCCCCcCCCCc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL------TQLLNVQIVRGRAET-LGKDVSFREQY  193 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~------~~l~ni~~~~~d~~~-~~~~~~~~~~f  193 (289)
                      ++.+|||||||+|.+++.+|..+|+..|+|||+|+.|++.|+++++.      .++.|++++++|+.+ ++.. ..+++|
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~-~~~~~~  124 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNF-FYKGQL  124 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHH-CCTTCE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhh-CCCcCe
Confidence            46789999999999999999999999999999999999999998765      456789999999987 4310 013789


Q ss_pred             eEEEEcCcccH------------HHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhC
Q 022962          194 DVAVARAVAEM------------RILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG  244 (289)
Q Consensus       194 D~V~sn~~~~~------------~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g  244 (289)
                      |.|+++...++            ..+++.+.++|||||.|++....  ..-...+.+.+...+
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~--~~~~~~~~~~l~~~~  185 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV--LELHDWMCTHFEEHP  185 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC--HHHHHHHHHHHHTST
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC--HHHHHHHHHHHHHCC
Confidence            99998743322            47999999999999999987643  233344455566665

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.69  E-value=5.2e-16  Score=134.44  Aligned_cols=127  Identities=13%  Similarity=0.070  Sum_probs=100.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||||||+|..+..++.  ++.+|+|+|+|+.+++.|++++...+. .+++++++|+.++..    +++||+|+++.
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~~~  140 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP----TELFDLIFDYV  140 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC----SSCEEEEEEES
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC----CCCeeEEEECh
Confidence            45999999999999988875  578999999999999999998876543 469999999998753    36899999974


Q ss_pred             c----c--cHHHHHHHHccccccCeEEEEEEcCC--------cHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962          201 V----A--EMRILAEYCLPLVRVGGLFVAAKGHD--------PQEEVKNSERAVQLMGASLLQLCSVE  254 (289)
Q Consensus       201 ~----~--~~~~ll~~~~~~LkpgG~l~~~~g~~--------~~~ei~~~~~~l~~~g~~~~~~~~~~  254 (289)
                      +    .  +...+++++.++|+|||.+++..-..        ......++.+.++..||+++++....
T Consensus       141 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  208 (235)
T 3lcc_A          141 FFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENP  208 (235)
T ss_dssp             STTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECT
T ss_pred             hhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecC
Confidence            2    3  67899999999999999999754211        11112344556778999999887664

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.69  E-value=3.6e-16  Score=137.14  Aligned_cols=124  Identities=17%  Similarity=0.129  Sum_probs=103.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+|||+|||+|.+++.++.. .|+.+|+++|+|+.+++.|+++++..++.+ ++++++|+.+...    +++||+|++
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~v~~  168 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE----EENVDHVIL  168 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC----CCSEEEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC----CCCcCEEEE
Confidence            4789999999999999999988 778999999999999999999999999876 9999999987532    367999999


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhC--CeEeEEe
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG--ASLLQLC  251 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g--~~~~~~~  251 (289)
                      +. .+...+++.+.++|+|||.+++....  .+...++.+.+++.|  |...++.
T Consensus       169 ~~-~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~l~~~g~~f~~~~~~  220 (255)
T 3mb5_A          169 DL-PQPERVVEHAAKALKPGGFFVAYTPC--SNQVMRLHEKLREFKDYFMKPRTI  220 (255)
T ss_dssp             CS-SCGGGGHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHTGGGBSCCEEE
T ss_pred             CC-CCHHHHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHHHHcCCCccccEEE
Confidence            75 34567899999999999999987643  344455666778888  8766554

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.69  E-value=2.7e-16  Score=137.28  Aligned_cols=127  Identities=14%  Similarity=0.112  Sum_probs=100.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++... ..+|+|+|+|+.+++.++++....  .+++++++|+.+++..   +++||+|+++.
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~---~~~fD~v~~~~  166 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLP---PNTYDLIVIQW  166 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCC---SSCEEEEEEES
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCCC---CCCeEEEEEcc
Confidence            37899999999999999988765 568999999999999999977654  4799999999987643   36899999985


Q ss_pred             c------ccHHHHHHHHccccccCeEEEEEEcCCc-------------HHHHHHHHHHHHHhCCeEeEEeee
Q 022962          201 V------AEMRILAEYCLPLVRVGGLFVAAKGHDP-------------QEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       201 ~------~~~~~ll~~~~~~LkpgG~l~~~~g~~~-------------~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      +      .+...+++++.++|||||++++......             .....++.+.++.+||.++++...
T Consensus       167 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  238 (254)
T 1xtp_A          167 TAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ  238 (254)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence            3      4578999999999999999998653100             001234555677999998887643

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.69  E-value=2.1e-16  Score=136.82  Aligned_cols=123  Identities=14%  Similarity=0.087  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||||||+|.++..++...  .+|+|+|+|+.+++.|+++...    +++++++|++++..    +++||+|+++. 
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~----~~~fD~v~~~~~  112 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQL----PRRYDNIVLTHV  112 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCC----SSCEEEEEEESC
T ss_pred             CCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCc----CCcccEEEEhhH
Confidence            6789999999999999988764  4899999999999999886433    79999999988732    37899999985 


Q ss_pred             ---cccHHHHHHHHc-cccccCeEEEEEEcCCc-H-----------------------------HHHHHHHHHHHHhCCe
Q 022962          201 ---VAEMRILAEYCL-PLVRVGGLFVAAKGHDP-Q-----------------------------EEVKNSERAVQLMGAS  246 (289)
Q Consensus       201 ---~~~~~~ll~~~~-~~LkpgG~l~~~~g~~~-~-----------------------------~ei~~~~~~l~~~g~~  246 (289)
                         +.+...+++++. ++|||||++++...... .                             -...++.+.++.+||+
T Consensus       113 l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  192 (250)
T 2p7i_A          113 LEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQ  192 (250)
T ss_dssp             GGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred             HHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCe
Confidence               357889999999 99999999998763211 0                             0123556678899999


Q ss_pred             EeEEeeee
Q 022962          247 LLQLCSVE  254 (289)
Q Consensus       247 ~~~~~~~~  254 (289)
                      ++++..+.
T Consensus       193 ~~~~~~~~  200 (250)
T 2p7i_A          193 VTYRSGIF  200 (250)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeeeE
Confidence            99887554

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.69  E-value=2.3e-16  Score=138.07  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|..+..++...+ .+|+|+|+|+.+++.++++..   ..+++++++|+.+++..   +++||+|+++.
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~---~~~fD~v~~~~  116 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIE---PDAYNVVLSSL  116 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCC---TTCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCC---CCCeEEEEEch
Confidence            378999999999999999987643 399999999999999988655   34799999999987643   37899999985


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEE
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                          +.+...+++++.++|||||.+++.
T Consensus       117 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          117 ALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence                457899999999999999999985

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.69  E-value=3.7e-16  Score=140.07  Aligned_cols=129  Identities=14%  Similarity=0.112  Sum_probs=104.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|..+..++..+ +.+|+|+|+|+.+++.++++++..++. +++++++|+.+++..   +++||+|+++
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~fD~v~~~  157 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE---DNSYDFIWSQ  157 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC---TTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCC---CCCEeEEEec
Confidence            47899999999999999999875 469999999999999999999888874 699999999987643   3789999997


Q ss_pred             C----cccHHHHHHHHccccccCeEEEEEEcC----Cc---HH------------HHHHHHHHHHHhCCeEeEEeee
Q 022962          200 A----VAEMRILAEYCLPLVRVGGLFVAAKGH----DP---QE------------EVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~g~----~~---~~------------ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      .    +.+...+++++.++|||||++++....    ..   ..            ....+.+.++.+||.++++..+
T Consensus       158 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  234 (297)
T 2o57_A          158 DAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSR  234 (297)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred             chhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence            4    346789999999999999999986421    00   01            1234556778999998887654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.68  E-value=7e-16  Score=128.50  Aligned_cols=115  Identities=16%  Similarity=0.205  Sum_probs=94.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC--EEEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n--i~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+|||+|||+|.+++.++..  +.+|+|+|+|+.+++.+++++...++++  ++++++|+.+...    +++||+|++
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~  125 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK----DRKYNKIIT  125 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT----TSCEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc----cCCceEEEE
Confidence            4779999999999999998876  7899999999999999999999999887  9999999987432    368999999


Q ss_pred             cCc-----ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHh
Q 022962          199 RAV-----AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLM  243 (289)
Q Consensus       199 n~~-----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~  243 (289)
                      +..     .....+++.+.++|+|||.+++.......  ..++.+.+++.
T Consensus       126 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~l~~~  173 (194)
T 1dus_A          126 NPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG--AKSLAKYMKDV  173 (194)
T ss_dssp             CCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH--HHHHHHHHHHH
T ss_pred             CCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCC--hHHHHHHHHHH
Confidence            853     45679999999999999999987754432  22334444455

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.68  E-value=1.2e-15  Score=130.71  Aligned_cols=98  Identities=15%  Similarity=0.148  Sum_probs=85.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||+|||+|.++..++...+  +|+|+|+|+.+++.++++.+..+ .+++++++|+.+++..   +++||+|+++..
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~---~~~~D~v~~~~~  112 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFE---DKTFDYVIFIDS  112 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSC---TTCEEEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCC---CCcEEEEEEcCc
Confidence            67999999999999999987754  99999999999999999998877 5799999999886532   368999999854


Q ss_pred             ------ccHHHHHHHHccccccCeEEEEEE
Q 022962          202 ------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       202 ------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                            .+...+++.+.++|+|||.+++..
T Consensus       113 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  142 (227)
T 1ve3_A          113 IVHFEPLELNQVFKEVRRVLKPSGKFIMYF  142 (227)
T ss_dssp             GGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHhCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence                  356789999999999999998764

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.68  E-value=7.9e-16  Score=130.00  Aligned_cols=131  Identities=12%  Similarity=0.133  Sum_probs=101.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++ +|||||||+|..+..++..  +.+|+|+|+|+.+++.++++....+. +++++++|+.+++..   +++||+|+++.
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~---~~~fD~v~~~~  102 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIV---ADAWEGIVSIF  102 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCC---TTTCSEEEEEC
T ss_pred             CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCC---cCCccEEEEEh
Confidence            36 9999999999999988865  57999999999999999999988877 799999999887543   36899999873


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEcCCc--------------HHHHHHHHHHHHHhCCeEeEEeeeecCCCCC
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKGHDP--------------QEEVKNSERAVQLMGASLLQLCSVESQSPFG  260 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g~~~--------------~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~  260 (289)
                          ..+...+++.+.++|+|||.+++......              .-...++.+.++  ||+++++.....+...+
T Consensus       103 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~~~~~~g  178 (202)
T 2kw5_A          103 CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLERNLDEG  178 (202)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEEEECSCS
T ss_pred             hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEEeecCCC
Confidence                24678999999999999999998742110              011233444454  99999887776544333

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.68  E-value=1.7e-15  Score=133.11  Aligned_cols=104  Identities=17%  Similarity=0.228  Sum_probs=88.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+|||||||+|..++.+|...| +.+|+++|+|+.+++.|+++++..++. +|+++++|+.+........++||+|++
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~  142 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI  142 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence            478999999999999999998887 799999999999999999999999986 799999999874221111248999998


Q ss_pred             cC-cccHHHHHHHHccccccCeEEEEE
Q 022962          199 RA-VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       199 n~-~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .+ ......+++.+.++|||||++++.
T Consensus       143 d~~~~~~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          143 DADKPNNPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             CSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence            85 446788999999999999999874

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.68  E-value=9e-16  Score=127.59  Aligned_cols=121  Identities=21%  Similarity=0.170  Sum_probs=100.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.+++.++...  .+|+++|+|+.+++.++++++.+++ .+++++++|+.+....   .++||+|+++
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~  107 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK---IPDIDIAVVG  107 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT---SCCEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc---CCCCCEEEEC
Confidence            47899999999999999998764  7999999999999999999999988 6899999998872111   1479999998


Q ss_pred             Cc-ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEe
Q 022962          200 AV-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL  248 (289)
Q Consensus       200 ~~-~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~  248 (289)
                      .. ..+..+++.+.++|+|||.+++...  ..+....+.+.+++.||.+.
T Consensus       108 ~~~~~~~~~l~~~~~~l~~gG~l~~~~~--~~~~~~~~~~~l~~~g~~~~  155 (192)
T 1l3i_A          108 GSGGELQEILRIIKDKLKPGGRIIVTAI--LLETKFEAMECLRDLGFDVN  155 (192)
T ss_dssp             CCTTCHHHHHHHHHHTEEEEEEEEEEEC--BHHHHHHHHHHHHHTTCCCE
T ss_pred             CchHHHHHHHHHHHHhcCCCcEEEEEec--CcchHHHHHHHHHHCCCceE
Confidence            65 6789999999999999999998653  23455566677888998443

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.68  E-value=6.2e-16  Score=140.17  Aligned_cols=148  Identities=12%  Similarity=0.105  Sum_probs=112.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH----cCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL----TQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~----~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.+|||||||+|..+..+++..+..+|++||+|+.+++.|+++...    ....+++++++|+.++... ..+++||+|+
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~~~fDvIi  174 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ-TPDNTYDVVI  174 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS-SCTTCEEEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh-ccCCceeEEE
Confidence            6799999999999999998766678999999999999999997643    2234799999999876431 0137899999


Q ss_pred             EcCcccH--------HHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCC-CCceEEEE
Q 022962          198 ARAVAEM--------RILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSP-FGQRTAVV  266 (289)
Q Consensus       198 sn~~~~~--------~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~-~~~r~lv~  266 (289)
                      ++.....        ..+++.+.++|+|||.+++..+.  ........+.+.++..||..++......|.. .+.+..++
T Consensus       175 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~~  254 (304)
T 3bwc_A          175 IDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTLV  254 (304)
T ss_dssp             EECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEEE
Confidence            9853321        68999999999999999987653  2345567777888899998777664444443 45666777


Q ss_pred             EEec
Q 022962          267 CLKS  270 (289)
Q Consensus       267 ~~k~  270 (289)
                      +.+.
T Consensus       255 as~~  258 (304)
T 3bwc_A          255 CSKK  258 (304)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            6664

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.68  E-value=9.4e-17  Score=137.59  Aligned_cols=130  Identities=18%  Similarity=0.102  Sum_probs=97.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHH----HHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHA----VSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~----~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ++.+|||||||+|.++..++..+|+.+|+|+|+|+.|++.+.+.    +...+++|++++++|+++++...   +. |.|
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~---~~-d~v  102 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS---GV-GEL  102 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC---CE-EEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC---CC-CEE
Confidence            47799999999999999999999999999999999988864333    33456778999999999976532   33 655


Q ss_pred             EEc---C------cccHHHHHHHHccccccCeEEEEEEcCC---------------cHHHH-HHHHHHHHHhCCeEeEEe
Q 022962          197 VAR---A------VAEMRILAEYCLPLVRVGGLFVAAKGHD---------------PQEEV-KNSERAVQLMGASLLQLC  251 (289)
Q Consensus       197 ~sn---~------~~~~~~ll~~~~~~LkpgG~l~~~~g~~---------------~~~ei-~~~~~~l~~~g~~~~~~~  251 (289)
                      +..   .      +.+...+++++.++|||||.+++..+..               ....+ ..+...+..+||.+.++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~  182 (218)
T 3mq2_A          103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCR  182 (218)
T ss_dssp             EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeee
Confidence            532   1      1233789999999999999999864311               11222 235667889999999887


Q ss_pred             eee
Q 022962          252 SVE  254 (289)
Q Consensus       252 ~~~  254 (289)
                      .+.
T Consensus       183 ~~~  185 (218)
T 3mq2_A          183 YLE  185 (218)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            663

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.68  E-value=6.2e-16  Score=132.25  Aligned_cols=137  Identities=15%  Similarity=0.075  Sum_probs=102.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.++++..    .+++++++|+.+++..    ++||+|+++.
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~----~~fD~v~~~~  114 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP----TSIDTIVSTY  114 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC----SCCSEEEEES
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC----CCeEEEEECc
Confidence            3779999999999999999876  6799999999999999988654    4789999999987542    7899999985


Q ss_pred             c----ccHHH--HHHHHccccccCeEEEEEEcC-CcHH---------------------------HHHHHHHHHHHhCCe
Q 022962          201 V----AEMRI--LAEYCLPLVRVGGLFVAAKGH-DPQE---------------------------EVKNSERAVQLMGAS  246 (289)
Q Consensus       201 ~----~~~~~--ll~~~~~~LkpgG~l~~~~g~-~~~~---------------------------ei~~~~~~l~~~g~~  246 (289)
                      +    .+...  +++++.++|||||.+++.... ....                           ...++.+.++++||+
T Consensus       115 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  194 (220)
T 3hnr_A          115 AFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFH  194 (220)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEE
T ss_pred             chhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCE
Confidence            2    33434  999999999999999987421 1100                           124456778899998


Q ss_pred             EeEEeeeecCCCCCceEEEEEEecCCCC
Q 022962          247 LLQLCSVESQSPFGQRTAVVCLKSRRTP  274 (289)
Q Consensus       247 ~~~~~~~~~~~~~~~r~lv~~~k~~~~p  274 (289)
                      +..+..      . ....++..+..++|
T Consensus       195 v~~~~~------~-~~~w~~~~~~~~~~  215 (220)
T 3hnr_A          195 VTFTRL------N-HFVWVMEATKQLEH  215 (220)
T ss_dssp             EEEEEC------S-SSEEEEEEEECSCC
T ss_pred             EEEeec------c-ceEEEEeehhhhhh
Confidence            776641      1 34455555554554

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.67  E-value=5e-16  Score=136.79  Aligned_cols=92  Identities=18%  Similarity=0.153  Sum_probs=79.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|+++..     +++++++|+.+++.    +++||+|+++. 
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~----~~~fD~v~~~~~  119 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL----GRRFSAVTCMFS  119 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC----SCCEEEEEECTT
T ss_pred             CCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc----cCCcCEEEEcCc
Confidence            679999999999999998866  4699999999999999988632     78999999998754    37899999974 


Q ss_pred             ----c---ccHHHHHHHHccccccCeEEEEE
Q 022962          201 ----V---AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       201 ----~---~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                          +   .+...+++++.++|||||.+++.
T Consensus       120 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          120 SIGHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                2   25668899999999999999984

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.67  E-value=5.9e-17  Score=141.49  Aligned_cols=128  Identities=12%  Similarity=0.075  Sum_probs=96.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +|.+|||||||+|..+..++...| .+|++||+|+.+++.|+++++..+. +++++.+|++++... ..+++||.|+...
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~-~~~~~FD~i~~D~  136 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPT-LPDGHFDGILYDT  136 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGG-SCTTCEEEEEECC
T ss_pred             CCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhccc-ccccCCceEEEee
Confidence            488999999999999988886654 5899999999999999999887765 699999999876432 1247899998753


Q ss_pred             ---------cccHHHHHHHHccccccCeEEEEEEc----------CCcHHH--HHHHHHHHHHhCCeEeEEe
Q 022962          201 ---------VAEMRILAEYCLPLVRVGGLFVAAKG----------HDPQEE--VKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 ---------~~~~~~ll~~~~~~LkpgG~l~~~~g----------~~~~~e--i~~~~~~l~~~g~~~~~~~  251 (289)
                               ..+...+++++.++|||||+|++...          ......  .+.....|.++||+...+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~i~  208 (236)
T 3orh_A          137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIR  208 (236)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGGEE
T ss_pred             eecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEEEE
Confidence                     23578899999999999999987531          011111  1233456778999765543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.67  E-value=3.5e-16  Score=135.44  Aligned_cols=101  Identities=16%  Similarity=0.265  Sum_probs=87.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCCcCCCCceEEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +.+|||||||+|..++.+|...+ +++|+++|+|+++++.|+++++..++.  +++++++|+.++.... .+++||+|++
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-~~~~fD~V~~  135 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-ANDSYQLVFG  135 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-CTTCEEEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-cCCCcCeEEE
Confidence            45999999999999999998764 789999999999999999999999986  6999999998753211 1478999999


Q ss_pred             cCc-ccHHHHHHHHccccccCeEEEE
Q 022962          199 RAV-AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       199 n~~-~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      .+. ..+..+++.+.++|||||.+++
T Consensus       136 d~~~~~~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          136 QVSPMDLKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             CCCTTTHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCcHHHHHHHHHHHHHHcCCCcEEEE
Confidence            864 4678899999999999999986

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.67  E-value=1.2e-15  Score=132.14  Aligned_cols=94  Identities=19%  Similarity=0.231  Sum_probs=81.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||+|||+|.++..++..   .+|+|+|+|+.+++.|+++....+ .+++++++|+.+++.    +++||+|+++. 
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~----~~~fD~v~~~~~  105 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL----PEPVDAITILCD  105 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC----SSCEEEEEECTT
T ss_pred             CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC----CCCcCEEEEeCC
Confidence            679999999999999888765   799999999999999999988877 479999999988754    36899999863 


Q ss_pred             ----c---ccHHHHHHHHccccccCeEEEE
Q 022962          201 ----V---AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       201 ----~---~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                          +   .+...+++++.++|+|||.+++
T Consensus       106 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  135 (243)
T 3d2l_A          106 SLNYLQTEADVKQTFDSAARLLTDGGKLLF  135 (243)
T ss_dssp             GGGGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             chhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence                2   3567899999999999999987

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.67  E-value=8e-16  Score=143.59  Aligned_cols=132  Identities=17%  Similarity=0.173  Sum_probs=102.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHc-----C-C--CCEEEEeccccccCCC---Cc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLT-----Q-L--LNVQIVRGRAETLGKD---VS  188 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~-----~-l--~ni~~~~~d~~~~~~~---~~  188 (289)
                      ++.+|||||||+|.+++.++... ++.+|+|+|+|+.+++.|+++++.+     | .  .+++++++|++++...   ..
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            47899999999999999999875 7889999999999999999988765     3 2  5899999999986210   11


Q ss_pred             CCCCceEEEEcC----cccHHHHHHHHccccccCeEEEEEEcC-C-c-H-----------------HHHHHHHHHHHHhC
Q 022962          189 FREQYDVAVARA----VAEMRILAEYCLPLVRVGGLFVAAKGH-D-P-Q-----------------EEVKNSERAVQLMG  244 (289)
Q Consensus       189 ~~~~fD~V~sn~----~~~~~~ll~~~~~~LkpgG~l~~~~g~-~-~-~-----------------~ei~~~~~~l~~~g  244 (289)
                      .+++||+|+++.    +.++..+++++.++|||||+|++.... . . .                 -...++.+.+++.|
T Consensus       163 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG  242 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAG  242 (383)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCC
Confidence            247899999985    357899999999999999999986411 1 0 0                 01144566778999


Q ss_pred             CeEeEEee
Q 022962          245 ASLLQLCS  252 (289)
Q Consensus       245 ~~~~~~~~  252 (289)
                      |..+++..
T Consensus       243 F~~v~~~~  250 (383)
T 4fsd_A          243 FRDVRLVS  250 (383)
T ss_dssp             CCCEEEEE
T ss_pred             CceEEEEe
Confidence            98776543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.67  E-value=3.6e-16  Score=135.94  Aligned_cols=101  Identities=21%  Similarity=0.309  Sum_probs=89.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCC-CCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGK-DVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~-~~~~~~~fD~V~s  198 (289)
                      ++.+|||||||+|..++.+|...|+.+|+++|+|+++++.|+++++..++. +++++++|+.+... .  .+++||+|++
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~fD~V~~  148 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV--NDKVYDMIFI  148 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHH--TTSCEEEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhh--ccCCccEEEE
Confidence            477999999999999999998778899999999999999999999999985 79999999987532 1  1378999999


Q ss_pred             cC-cccHHHHHHHHccccccCeEEEE
Q 022962          199 RA-VAEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       199 n~-~~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      ++ ...+..+++.+.++|+|||++++
T Consensus       149 ~~~~~~~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          149 DAAKAQSKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             ETTSSSHHHHHHHHGGGEEEEEEEEE
T ss_pred             cCcHHHHHHHHHHHHHhcCCCeEEEE
Confidence            86 56788999999999999999987

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.66  E-value=8.7e-16  Score=133.11  Aligned_cols=126  Identities=15%  Similarity=0.110  Sum_probs=100.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.++++.   ...+++++++|+.+++..   +++||+|+++.
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~---~~~fD~v~~~~  124 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFE---NEQFEAIMAIN  124 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSC---TTCEEEEEEES
T ss_pred             CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCC---CCCccEEEEcC
Confidence            4789999999999999999876  679999999999999998864   334799999999987643   37899999984


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEcCC-cH------------------HHHHHHHHHHHHhCCeEeEEeeee
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKGHD-PQ------------------EEVKNSERAVQLMGASLLQLCSVE  254 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g~~-~~------------------~ei~~~~~~l~~~g~~~~~~~~~~  254 (289)
                          +.+...+++++.++|+|||.+++..... ..                  -...++.+.++.+||++++...+.
T Consensus       125 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  201 (242)
T 3l8d_A          125 SLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVY  201 (242)
T ss_dssp             CTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeeccc
Confidence                4578899999999999999999865211 00                  011345567779999999887664

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.66  E-value=2.7e-15  Score=129.37  Aligned_cols=144  Identities=15%  Similarity=0.096  Sum_probs=100.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.+++.++... +..+|+|+|+|+.+++.++++++..  .|++++++|+.+........++||+|+++
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            47899999999999999999774 5689999999999999999988765  58999999998743111123689999998


Q ss_pred             Cccc--HHHHHHHHccccccCeEEEEEEcCC------cHHHHH-HHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962          200 AVAE--MRILAEYCLPLVRVGGLFVAAKGHD------PQEEVK-NSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       200 ~~~~--~~~ll~~~~~~LkpgG~l~~~~g~~------~~~ei~-~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      ....  ...+++.+.++|||||++++.....      ....+. +....+... |++++...+  ......+..++.+|
T Consensus       151 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-f~~~~~~~~--~~~~~~~~~~~~~~  226 (227)
T 1g8a_A          151 VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEY-FEVIERLNL--EPYEKDHALFVVRK  226 (227)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTT-SEEEEEEEC--TTTSSSEEEEEEEC
T ss_pred             CCCHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHHHhh-ceeeeEecc--CcccCCCEEEEEEe
Confidence            6432  2355999999999999999864211      111221 222233455 887776544  11123344555543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.66  E-value=5.8e-16  Score=131.80  Aligned_cols=105  Identities=14%  Similarity=0.096  Sum_probs=87.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC--CCEEEEeccccccCCCCcCCCC-ceEEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL--LNVQIVRGRAETLGKDVSFREQ-YDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l--~ni~~~~~d~~~~~~~~~~~~~-fD~V~s  198 (289)
                      +.+|||+|||+|.+++.++.. ...+|+|+|+|+.+++.|+++++.+++  ++++++++|+.++.... .+++ ||+|++
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I~~  131 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP-QNQPHFDVVFL  131 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC-CSSCCEEEEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh-ccCCCCCEEEE
Confidence            679999999999999986654 346999999999999999999999998  68999999998864320 1368 999999


Q ss_pred             cCc---ccHHHHHHHH--ccccccCeEEEEEEcCC
Q 022962          199 RAV---AEMRILAEYC--LPLVRVGGLFVAAKGHD  228 (289)
Q Consensus       199 n~~---~~~~~ll~~~--~~~LkpgG~l~~~~g~~  228 (289)
                      +..   .....+++.+  .++|+|||.+++.....
T Consensus       132 ~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          132 DPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             CCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            854   4567888888  78899999999877543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.66  E-value=1.4e-15  Score=133.16  Aligned_cols=122  Identities=15%  Similarity=0.120  Sum_probs=94.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc--------CCCCEEEEeccccc-cCCCCcCCC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--------QLLNVQIVRGRAET-LGKDVSFRE  191 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~--------~l~ni~~~~~d~~~-~~~~~~~~~  191 (289)
                      ++.+|||||||+|.+++.+|...|..+|+|||+|+.+++.++++++.+        ++.|++++++|+.+ ++.. ...+
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~-~~~~  127 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNF-FEKG  127 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGT-SCTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHh-cccc
Confidence            477999999999999999999988889999999999999999998877        77899999999987 3311 1136


Q ss_pred             CceEEEEcCcccH------------HHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCC
Q 022962          192 QYDVAVARAVAEM------------RILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA  245 (289)
Q Consensus       192 ~fD~V~sn~~~~~------------~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~  245 (289)
                      ++|.|+.+....+            ..+++.+.++|+|||.|++....  ..-...+.+.+...+.
T Consensus       128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~--~~~~~~~~~~~~~~~~  191 (246)
T 2vdv_E          128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV--KDLHEWMVKHLEEHPL  191 (246)
T ss_dssp             CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC--HHHHHHHHHHHHHSTT
T ss_pred             ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc--HHHHHHHHHHHHhCcC
Confidence            8999987632222            58999999999999999986643  2222233345556653

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.66  E-value=1e-15  Score=134.12  Aligned_cols=99  Identities=14%  Similarity=0.210  Sum_probs=84.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.+++++ ..+..+++++++|+++++..   +++||+|+++.
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~---~~~fD~v~~~~  112 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLP---DESVHGVIVVH  112 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSC---TTCEEEEEEES
T ss_pred             CCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCC---CCCeeEEEECC
Confidence            4789999999999999999865  679999999999999999987 33456899999999887643   37899999984


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEE
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                          +.+...+++++.++|+|||.+++..
T Consensus       113 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (263)
T 2yqz_A          113 LWHLVPDWPKVLAEAIRVLKPGGALLEGW  141 (263)
T ss_dssp             CGGGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhcCCHHHHHHHHHHHCCCCcEEEEEe
Confidence                3467899999999999999999863

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.66  E-value=3.9e-17  Score=156.86  Aligned_cols=155  Identities=14%  Similarity=0.126  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHhhcCcCceeec----------ChHHHHHhhhhhccccCCCCcccccc--cc--CCCCCCCCeEEEEc
Q 022962           64 QEQIHLYVDALLQWNRKMNLTAVK----------DVNEVMERHIDDSLAIIPPIKNSYTS--HC--DSSCNSNLKLVDVG  129 (289)
Q Consensus        64 ~~~l~~~~~~l~~~n~~~~l~~~~----------~~~~~~~~~~~~sl~~~~~~~~~~~~--~~--~~~~~~~~~VLDiG  129 (289)
                      ...+..|.+.+.++.++.++.++.          +..++|...+.+ ...+.+.+.++..  ..  .....++.+|||||
T Consensus        88 ~~~~~~~~~ll~~~~~~~pl~~i~~~r~~~~~~~~~~~~y~~~~~~-~~~L~d~~~t~~~~~~il~~l~~~~~~~VLDiG  166 (480)
T 3b3j_A           88 PHDFCSFYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQQ-QNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVG  166 (480)
T ss_dssp             --------------------------------CCEEEEGGGCSCHH-HHHHHHHHHHHHHHHHHHHTGGGTTTCEEEEES
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHhhhhhhhchhhHHHHHhhhccc-hhhhcChHhHHHHHHHHHHhhhhcCCCEEEEec
Confidence            344566667777777888888887          333444433221 1111111111100  00  00122478999999


Q ss_pred             CCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcCc------c
Q 022962          130 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARAV------A  202 (289)
Q Consensus       130 cG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~------~  202 (289)
                      ||+|.+++.+|+ .+..+|+|+|+|+ +++.|+++++.+++ ++|+++++|+++++.    +++||+|+|+.+      .
T Consensus       167 cGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~----~~~fD~Ivs~~~~~~~~~e  240 (480)
T 3b3j_A          167 CGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL----PEQVDIIISEPMGYMLFNE  240 (480)
T ss_dssp             CSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC----SSCEEEEECCCCHHHHTCH
T ss_pred             CcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc----CCCeEEEEEeCchHhcCcH
Confidence            999999999886 5678999999998 99999999999998 579999999998643    268999999864      3


Q ss_pred             cHHHHHHHHccccccCeEEEEEE
Q 022962          203 EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       203 ~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .....+..+.++|||||.+++..
T Consensus       241 ~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          241 RMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             HHHHHHHHGGGGEEEEEEEESCE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEe
Confidence            45667778899999999998543

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.66  E-value=9.4e-16  Score=136.41  Aligned_cols=123  Identities=15%  Similarity=0.110  Sum_probs=97.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++.  ++.+|+|+|+|+.+++.++++.     .+++++++|+++++.    +++||+|+++.
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~----~~~fD~v~~~~  125 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV----DKPLDAVFSNA  125 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC----SSCEEEEEEES
T ss_pred             CCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc----CCCcCEEEEcc
Confidence            478999999999999999987  6789999999999999998754     478899999998754    37899999985


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEcCC-cHHH---------------------------HHHHHHHHHHhCCeEe
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKGHD-PQEE---------------------------VKNSERAVQLMGASLL  248 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g~~-~~~e---------------------------i~~~~~~l~~~g~~~~  248 (289)
                          +.+...+++++.++|||||++++..... ....                           ..++.+.++.+||.++
T Consensus       126 ~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  205 (279)
T 3ccf_A          126 MLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVT  205 (279)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEE
T ss_pred             hhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEE
Confidence                3578899999999999999999865321 1111                           1234556778899887


Q ss_pred             EEeeee
Q 022962          249 QLCSVE  254 (289)
Q Consensus       249 ~~~~~~  254 (289)
                      ++..+.
T Consensus       206 ~~~~~~  211 (279)
T 3ccf_A          206 YAALFN  211 (279)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            766554

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.65  E-value=1.5e-15  Score=135.50  Aligned_cols=126  Identities=16%  Similarity=0.198  Sum_probs=101.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.++..++..++ .+|+|+|+|+.+++.+++++...++. +++++++|+.+++      ++||+|+++
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~fD~v~~~  136 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD------EPVDRIVSI  136 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC------CCCSEEEEE
T ss_pred             CcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC------CCeeEEEEe
Confidence            478999999999999999996654 59999999999999999999988874 7999999998763      679999998


Q ss_pred             C----c--ccHHHHHHHHccccccCeEEEEEEcC--CcHH------------------------------HHHHHHHHHH
Q 022962          200 A----V--AEMRILAEYCLPLVRVGGLFVAAKGH--DPQE------------------------------EVKNSERAVQ  241 (289)
Q Consensus       200 ~----~--~~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~------------------------------ei~~~~~~l~  241 (289)
                      .    +  .++..+++++.++|||||.+++....  ....                              ...++.+.++
T Consensus       137 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~  216 (287)
T 1kpg_A          137 GAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECAS  216 (287)
T ss_dssp             SCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHH
T ss_pred             CchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHH
Confidence            4    3  46789999999999999999975421  1000                              1344556677


Q ss_pred             HhCCeEeEEeee
Q 022962          242 LMGASLLQLCSV  253 (289)
Q Consensus       242 ~~g~~~~~~~~~  253 (289)
                      ++||.++++..+
T Consensus       217 ~aGf~~~~~~~~  228 (287)
T 1kpg_A          217 ANGFTVTRVQSL  228 (287)
T ss_dssp             TTTCEEEEEEEC
T ss_pred             hCCcEEEEEEeC
Confidence            899998887643

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.65  E-value=1.8e-15  Score=134.70  Aligned_cols=124  Identities=18%  Similarity=0.168  Sum_probs=102.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+|||+|||+|.+++.++.. .|..+|+++|+|+.+++.|+++++.+++ ++++++++|+.+...    +++||+|++
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~V~~  187 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD----EKDVDALFL  187 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS----CCSEEEEEE
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc----CCccCEEEE
Confidence            4789999999999999999988 5789999999999999999999999887 579999999987621    267999999


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      +. .+...+++.+.++|+|||.+++..+.  .+.+.++.+.++..||...++.
T Consensus       188 ~~-~~~~~~l~~~~~~L~pgG~l~~~~~~--~~~~~~~~~~l~~~gf~~~~~~  237 (277)
T 1o54_A          188 DV-PDPWNYIDKCWEALKGGGRFATVCPT--TNQVQETLKKLQELPFIRIEVW  237 (277)
T ss_dssp             CC-SCGGGTHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHSSEEEEEEE
T ss_pred             CC-cCHHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHCCCceeEEE
Confidence            75 34557889999999999999998753  2334455566778899866654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.65  E-value=5.8e-16  Score=128.27  Aligned_cols=104  Identities=13%  Similarity=0.127  Sum_probs=86.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|+++++..++. +++++++|+.+...  ..+++||+|+++
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~i~~~  107 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID--CLTGRFDLVFLD  107 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH--HBCSCEEEEEEC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH--hhcCCCCEEEEC
Confidence            3779999999999999998876 6679999999999999999999999885 69999999987421  123579999998


Q ss_pred             Cc---ccHHHHHHHHc--cccccCeEEEEEEcC
Q 022962          200 AV---AEMRILAEYCL--PLVRVGGLFVAAKGH  227 (289)
Q Consensus       200 ~~---~~~~~ll~~~~--~~LkpgG~l~~~~g~  227 (289)
                      ..   .....+++.+.  ++|+|||.+++....
T Consensus       108 ~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          108 PPYAKETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCCcchHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            53   34566777776  999999999987754

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.65  E-value=6.9e-16  Score=133.33  Aligned_cols=119  Identities=10%  Similarity=0.074  Sum_probs=94.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccc-ccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAE-TLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~-~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.++++     ..+++++++|+. .++..  .+++||+|+++
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~--~~~~fD~v~~~  118 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAG--LGAPFGLIVSR  118 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTT--CCCCEEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCc--CCCCEEEEEeC
Confidence            4789999999999999999876  67999999999999999887     347999999995 44432  13789999998


Q ss_pred             CcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                        .+...+++++.++|||||.++...+....+++   ...+...||....+...
T Consensus       119 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---~~~l~~~Gf~~~~~~~~  167 (226)
T 3m33_A          119 --RGPTSVILRLPELAAPDAHFLYVGPRLNVPEV---PERLAAVGWDIVAEDHV  167 (226)
T ss_dssp             --SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHH---HHHHHHTTCEEEEEEEE
T ss_pred             --CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHH---HHHHHHCCCeEEEEEee
Confidence              46678889999999999999854444444444   44566899988776543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.65  E-value=2.1e-15  Score=123.90  Aligned_cols=133  Identities=9%  Similarity=-0.008  Sum_probs=96.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.++..++...  .+|+|+|+|+.+++.++++     ..+++++++|   .+..   +++||+|+++.
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d---~~~~---~~~~D~v~~~~   83 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK-----FDSVITLSDP---KEIP---DNSVDFILFAN   83 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH-----CTTSEEESSG---GGSC---TTCEEEEEEES
T ss_pred             CCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC---CCCC---CCceEEEEEcc
Confidence            47799999999999999998764  3999999999999999887     4479999998   2221   36899999984


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEcCCc--------H--HHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEE
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKGHDP--------Q--EEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVV  266 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g~~~--------~--~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~  266 (289)
                          +.+...+++++.++|+|||++++..-...        .  -...++.+.++  ||++++....     ......++
T Consensus        84 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~-----~~~~~~l~  156 (170)
T 3i9f_A           84 SFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP-----TPYHFGLV  156 (170)
T ss_dssp             CSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS-----STTEEEEE
T ss_pred             chhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC-----CCceEEEE
Confidence                45788999999999999999998642110        0  01123344454  9988877532     23445566


Q ss_pred             EEecCCC
Q 022962          267 CLKSRRT  273 (289)
Q Consensus       267 ~~k~~~~  273 (289)
                      +.+..+.
T Consensus       157 ~~~~~~~  163 (170)
T 3i9f_A          157 LKRKTSE  163 (170)
T ss_dssp             EEECCCC
T ss_pred             EecCCCC
Confidence            6655333

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.65  E-value=3.5e-15  Score=128.45  Aligned_cols=102  Identities=17%  Similarity=0.249  Sum_probs=82.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCc---CCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVS---FREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~---~~~~fD~V  196 (289)
                      +.+|||||||+|..++.+|...+ +.+|+++|+|+.+++.|+++++.+++. +++++++|+.+......   ..++||+|
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V  138 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  138 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence            67999999999999999998654 789999999999999999999999986 59999999876422100   01589999


Q ss_pred             EEcCc-cc---HHHHHHHHccccccCeEEEEE
Q 022962          197 VARAV-AE---MRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~-~~---~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ++++. ..   ...+++.+ ++|+|||.+++.
T Consensus       139 ~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~  169 (221)
T 3u81_A          139 FLDHWKDRYLPDTLLLEKC-GLLRKGTVLLAD  169 (221)
T ss_dssp             EECSCGGGHHHHHHHHHHT-TCCCTTCEEEES
T ss_pred             EEcCCcccchHHHHHHHhc-cccCCCeEEEEe
Confidence            99863 22   33567777 999999999864

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.65  E-value=1.8e-15  Score=126.91  Aligned_cols=99  Identities=21%  Similarity=0.217  Sum_probs=87.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++++..++++++++++|+.+++.    +++||+|+++.
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~~~  105 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF----DRQYDFILSTV  105 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC----CCCEEEEEEES
T ss_pred             CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC----CCCceEEEEcc
Confidence            3679999999999999999876  67999999999999999999998888789999999988754    37899999984


Q ss_pred             c------ccHHHHHHHHccccccCeEEEEEE
Q 022962          201 V------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ~------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +      .+...+++.+.++|+|||.+++..
T Consensus       106 ~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          106 VLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             CGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            2      267899999999999999988754

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.65  E-value=9.7e-16  Score=135.33  Aligned_cols=126  Identities=17%  Similarity=0.100  Sum_probs=92.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH-----------------cCCCCEEEEecccccc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL-----------------TQLLNVQIVRGRAETL  183 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~-----------------~~l~ni~~~~~d~~~~  183 (289)
                      ++.+|||+|||+|..+..||..  +.+|+|||+|+.|++.|++....                 ....+|+++++|+.++
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            3679999999999999999976  67999999999999999765431                 0124799999999988


Q ss_pred             CCCCcCCCCceEEEEcCc------ccHHHHHHHHccccccCeEEEEEE---------cC---CcHHHHHHHHHHHHHhCC
Q 022962          184 GKDVSFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAAK---------GH---DPQEEVKNSERAVQLMGA  245 (289)
Q Consensus       184 ~~~~~~~~~fD~V~sn~~------~~~~~ll~~~~~~LkpgG~l~~~~---------g~---~~~~ei~~~~~~l~~~g~  245 (289)
                      +...  .++||+|+++..      .....+++++.++|||||+|++..         ++   ...+++   .+.+.. +|
T Consensus       146 ~~~~--~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el---~~~l~~-~f  219 (252)
T 2gb4_A          146 PRAN--IGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAEL---KRLFGT-KC  219 (252)
T ss_dssp             GGGC--CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHH---HHHHTT-TE
T ss_pred             Cccc--CCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHH---HHHhhC-Ce
Confidence            6421  268999998742      346789999999999999996432         11   123344   334444 58


Q ss_pred             eEeEEeeee
Q 022962          246 SLLQLCSVE  254 (289)
Q Consensus       246 ~~~~~~~~~  254 (289)
                      ++.....++
T Consensus       220 ~v~~~~~~~  228 (252)
T 2gb4_A          220 SMQCLEEVD  228 (252)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEeccc
Confidence            877776553

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.65  E-value=3.1e-16  Score=136.31  Aligned_cols=122  Identities=13%  Similarity=0.117  Sum_probs=92.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccccc--CCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL--GKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~--~~~~~~~~~fD~V~s  198 (289)
                      ++.+|||||||+|.++..++.. +..+|+|+|+|+.|++.|+++++..+ .+++++++|++++  +..   +++||+|++
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~---~~~fD~V~~  134 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLP---DGHFDGILY  134 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSC---TTCEEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccC---CCceEEEEE
Confidence            3679999999999999998754 33599999999999999999888777 4799999999987  432   378999999


Q ss_pred             c--C-------cccHHHHHHHHccccccCeEEEEEEcCCc----------HHHH--HHHHHHHHHhCCeE
Q 022962          199 R--A-------VAEMRILAEYCLPLVRVGGLFVAAKGHDP----------QEEV--KNSERAVQLMGASL  247 (289)
Q Consensus       199 n--~-------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~----------~~ei--~~~~~~l~~~g~~~  247 (289)
                      +  .       ....+.+++++.++|||||+|++......          ....  ......+.+.||..
T Consensus       135 d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  204 (236)
T 1zx0_A          135 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR  204 (236)
T ss_dssp             CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred             CCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence            2  1       12345789999999999999987532111          0111  22345677899974

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.65  E-value=2.2e-15  Score=138.99  Aligned_cols=140  Identities=21%  Similarity=0.122  Sum_probs=108.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.++.+|||+|||+|.+++.+|... |..+|+|+|+|+.+++.|++|++..|+++++++++|+.+++..   .+.||+|+
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~---~~~~D~Ii  277 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF---FPEVDRIL  277 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT---CCCCSEEE
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc---cCCCCEEE
Confidence            4567899999999999999999876 7899999999999999999999999988899999999997653   25699999


Q ss_pred             EcCc------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEE
Q 022962          198 ARAV------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAV  265 (289)
Q Consensus       198 sn~~------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv  265 (289)
                      +|..            ..+..+++.+.++|+|||.+++..+.  .+.+.   ...+ .|++..+...+.  ...-.+.++
T Consensus       278 ~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~--~~~~~---~~~~-~g~~~~~~~~l~--~g~l~~~i~  349 (354)
T 3tma_A          278 ANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR--PALLK---RALP-PGFALRHARVVE--QGGVYPRVF  349 (354)
T ss_dssp             ECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC--HHHHH---HHCC-TTEEEEEEEECC--BTTBCCEEE
T ss_pred             ECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC--HHHHH---HHhh-cCcEEEEEEEEE--eCCEEEEEE
Confidence            9841            12478999999999999999998763  11122   2233 788877665442  112245566


Q ss_pred             EEEe
Q 022962          266 VCLK  269 (289)
Q Consensus       266 ~~~k  269 (289)
                      +++|
T Consensus       350 vl~r  353 (354)
T 3tma_A          350 VLEK  353 (354)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            6665

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.64  E-value=5.3e-16  Score=137.33  Aligned_cols=132  Identities=17%  Similarity=0.122  Sum_probs=93.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-----------------------------C
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-----------------------------L  171 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-----------------------------~  171 (289)
                      ++.+|||||||+|..++.++.. ...+|+|+|+|+.|++.|+++++....                             .
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            3789999999999887665543 224799999999999999987654320                             1


Q ss_pred             CEE-EEeccccccCC-CCcCCCCceEEEEcCc--------ccHHHHHHHHccccccCeEEEEEEcCCc------------
Q 022962          172 NVQ-IVRGRAETLGK-DVSFREQYDVAVARAV--------AEMRILAEYCLPLVRVGGLFVAAKGHDP------------  229 (289)
Q Consensus       172 ni~-~~~~d~~~~~~-~~~~~~~fD~V~sn~~--------~~~~~ll~~~~~~LkpgG~l~~~~g~~~------------  229 (289)
                      +++ ++++|+.+... .....++||+|+++.+        .++..+++++.++|||||+|++......            
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~  213 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC  213 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeec
Confidence            244 88999987421 1112368999999832        3557899999999999999998631100            


Q ss_pred             -HHHHHHHHHHHHHhCCeEeEEeee
Q 022962          230 -QEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       230 -~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                       .-...++.+.+...||.++++...
T Consensus       214 ~~~~~~~l~~~l~~aGF~i~~~~~~  238 (263)
T 2a14_A          214 VALEKGEVEQAVLDAGFDIEQLLHS  238 (263)
T ss_dssp             CCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cccCHHHHHHHHHHCCCEEEEEeec
Confidence             001234556777999999888654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.64  E-value=3.9e-15  Score=127.90  Aligned_cols=104  Identities=20%  Similarity=0.253  Sum_probs=87.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCC--cCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDV--SFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~--~~~~~fD~V  196 (289)
                      ++.+|||||||+|..++.+|...| +.+|+++|+++.+++.|+++++..++.+ ++++++|+.+.....  ...++||+|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v  137 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI  137 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence            377999999999999999998887 7899999999999999999999999865 999999997642110  001579999


Q ss_pred             EEcCc-ccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAV-AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~-~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ++.+. ..+..+++.+.++|+|||.+++.
T Consensus       138 ~~d~~~~~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          138 FIDADKQNNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             EECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             EEcCCcHHHHHHHHHHHHhcCCCcEEEEe
Confidence            99864 46789999999999999988864

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.64  E-value=6.4e-15  Score=130.84  Aligned_cols=124  Identities=16%  Similarity=0.108  Sum_probs=99.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHc-C--CCCEEEEeccccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLT-Q--LLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~-~--l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ++.+|||+|||+|.+++.++.. .|..+|+++|+|+.+++.|+++.+.. +  ..+++++++|+.+....   +++||+|
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~---~~~~D~v  175 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP---DGSVDRA  175 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC---TTCEEEE
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC---CCceeEE
Confidence            4789999999999999999985 46789999999999999999999887 6  56899999999887432   3689999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHH-hCCeEeEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQL-MGASLLQL  250 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~-~g~~~~~~  250 (289)
                      +++.. +...+++.+.++|+|||++++....  .+.+.++.+.++. .+|...++
T Consensus       176 ~~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~--~~~~~~~~~~l~~~~~f~~~~~  227 (280)
T 1i9g_A          176 VLDML-APWEVLDAVSRLLVAGGVLMVYVAT--VTQLSRIVEALRAKQCWTEPRA  227 (280)
T ss_dssp             EEESS-CGGGGHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHHSSBCCCEE
T ss_pred             EECCc-CHHHHHHHHHHhCCCCCEEEEEeCC--HHHHHHHHHHHHhcCCcCCcEE
Confidence            99653 4558899999999999999987653  2444555556666 67755443

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.64  E-value=5.2e-15  Score=133.61  Aligned_cols=146  Identities=14%  Similarity=0.072  Sum_probs=107.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH--cC--CCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL--TQ--LLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~--~~--l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.+|||||||+|..+..+++..+..+|+++|+|+.+++.|+++...  .+  ..+++++++|+.+....  .+++||+|+
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD~Ii  168 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK--FKNEFDVII  168 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG--CSSCEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh--CCCCceEEE
Confidence            5799999999999999998766778999999999999999998754  22  35799999998774221  136899999


Q ss_pred             EcCccc---------HHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCC-CCceEEE
Q 022962          198 ARAVAE---------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSP-FGQRTAV  265 (289)
Q Consensus       198 sn~~~~---------~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~-~~~r~lv  265 (289)
                      ++....         ...+++.+.++|+|||.+++..+.  ...+.+..+.+.+++. |..+.......|.- .+.+..+
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~vp~~p~g~~~f~  247 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRVYLGFMTTYPSGMWSYT  247 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEEEEEECTTSTTSEEEEE
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-CCceEEEEeecCccCCCceEEE
Confidence            985432         268999999999999999987653  3456667777777777 44444443333432 4566666


Q ss_pred             EEEec
Q 022962          266 VCLKS  270 (289)
Q Consensus       266 ~~~k~  270 (289)
                      ++.|.
T Consensus       248 ~as~~  252 (296)
T 1inl_A          248 FASKG  252 (296)
T ss_dssp             EEESS
T ss_pred             EecCC
Confidence            66654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.64  E-value=2.3e-15  Score=136.39  Aligned_cols=98  Identities=16%  Similarity=0.168  Sum_probs=86.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.++..++..+ +.+|+|+|+|+.+++.+++++...++. +++++++|+.+++      ++||+|+++
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~fD~v~~~  162 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA------EPVDRIVSI  162 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC------CCCSEEEEE
T ss_pred             CcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC------CCcCEEEEe
Confidence            47899999999999999999776 569999999999999999999988875 5999999998763      679999998


Q ss_pred             C----c--ccHHHHHHHHccccccCeEEEEEE
Q 022962          200 A----V--AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       200 ~----~--~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .    +  .++..+++++.++|||||++++..
T Consensus       163 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          163 EAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             SCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            4    3  567899999999999999999754

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.64  E-value=1.7e-15  Score=139.00  Aligned_cols=135  Identities=13%  Similarity=0.142  Sum_probs=100.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC--EEEEeccccccCCCC-cCCCCceEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDV-SFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n--i~~~~~d~~~~~~~~-~~~~~fD~V~  197 (289)
                      ++.+|||+|||+|.+++.+|..  +.+|++||+|+.+++.|++|++.+++++  ++++++|+.++.... ...++||+|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            4679999999999999999975  4599999999999999999999999874  999999998753210 0026899999


Q ss_pred             EcCc--------------ccHHHHHHHHccccccCeEEEEEEcCCc---HHHHHHHH-HHHHHhCCeEeEEeeeecCCC
Q 022962          198 ARAV--------------AEMRILAEYCLPLVRVGGLFVAAKGHDP---QEEVKNSE-RAVQLMGASLLQLCSVESQSP  258 (289)
Q Consensus       198 sn~~--------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~---~~ei~~~~-~~l~~~g~~~~~~~~~~~~~~  258 (289)
                      ++..              .++..+++.+.++|+|||.+++......   .+.+.++. +.+.+.|+.+. ...+..|..
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~-~~e~~~p~~  308 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA-SGELVIREA  308 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE-EEEEEEECC
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE-EEEEecccC
Confidence            9742              2467899999999999999887664332   33444333 34556788765 333444443

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.64  E-value=8.8e-15  Score=135.43  Aligned_cols=147  Identities=16%  Similarity=0.105  Sum_probs=108.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.++.+|||||||+|.++..++..+|+.+++++|+ +.+++.+++++...++. +++++++|+.+ +.    +..||+|+
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~----~~~~D~v~  253 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL----PVTADVVL  253 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC----SCCEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cC----CCCCCEEE
Confidence            34578999999999999999999999999999999 99999999999988886 79999999875 22    13499999


Q ss_pred             EcCcc----c--HHHHHHHHccccccCeEEEEEEc--C--Cc-HH-------------------HHHHHHHHHHHhCCeE
Q 022962          198 ARAVA----E--MRILAEYCLPLVRVGGLFVAAKG--H--DP-QE-------------------EVKNSERAVQLMGASL  247 (289)
Q Consensus       198 sn~~~----~--~~~ll~~~~~~LkpgG~l~~~~g--~--~~-~~-------------------ei~~~~~~l~~~g~~~  247 (289)
                      ++.+-    +  ...+++++.++|+|||++++...  .  .. ..                   ...++.+.++++||++
T Consensus       254 ~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~  333 (374)
T 1qzz_A          254 LSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLAL  333 (374)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEE
T ss_pred             EeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence            97532    2  34899999999999999987543  1  11 00                   1234556677899999


Q ss_pred             eEEeeeecCCCCCceEEEEEEecC
Q 022962          248 LQLCSVESQSPFGQRTAVVCLKSR  271 (289)
Q Consensus       248 ~~~~~~~~~~~~~~r~lv~~~k~~  271 (289)
                      +++..+..........++.+++..
T Consensus       334 ~~~~~~~~~~~~~~~~~i~~~~~~  357 (374)
T 1qzz_A          334 ASERTSGSTTLPFDFSILEFTAVS  357 (374)
T ss_dssp             EEEEEECCSSCSSCEEEEEEEECC
T ss_pred             EEEEECCCCcccCCcEEEEEEECc
Confidence            888755211001122566666654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.64  E-value=3.2e-15  Score=133.29  Aligned_cols=102  Identities=15%  Similarity=0.086  Sum_probs=86.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|..+..++.. +..+|+|+|+|+.+++.|+++....++ .+++++++|+.+.+..  .+++||+|+++
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~v~~~  140 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD--LGKEFDVISSQ  140 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC--CSSCEEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC--CCCCcCEEEEC
Confidence            3789999999999999988876 456999999999999999999988876 4699999999987541  14789999987


Q ss_pred             Cc--------ccHHHHHHHHccccccCeEEEEEE
Q 022962          200 AV--------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       200 ~~--------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..        .+...+++++.++|+|||++++..
T Consensus       141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            42        356889999999999999999764

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.63  E-value=1.4e-15  Score=126.59  Aligned_cols=106  Identities=12%  Similarity=0.066  Sum_probs=86.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCC-cCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDV-SFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~-~~~~~fD~V~s  198 (289)
                      ++.+|||+|||+|.+++.++. .+..+|+|+|+|+.+++.|+++++.+++ ++++++++|+.+..... ..+++||+|++
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            367999999999999998876 4567999999999999999999999887 47999999998743200 01368999999


Q ss_pred             cCc---ccHHHHHHHH--ccccccCeEEEEEEcC
Q 022962          199 RAV---AEMRILAEYC--LPLVRVGGLFVAAKGH  227 (289)
Q Consensus       199 n~~---~~~~~ll~~~--~~~LkpgG~l~~~~g~  227 (289)
                      +..   ......++.+  .++|+|||.+++....
T Consensus       123 ~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          123 DPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             CCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            853   3566777777  8999999999987754

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.7e-15  Score=136.08  Aligned_cols=103  Identities=18%  Similarity=0.120  Sum_probs=87.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHc--CCCCEEEEeccccccCCCC--c-CCCCce
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLT--QLLNVQIVRGRAETLGKDV--S-FREQYD  194 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~--~l~ni~~~~~d~~~~~~~~--~-~~~~fD  194 (289)
                      ++.+|||||||+|..+..++..+ +..+|+|+|+|+.+++.|+++++..  ...+++++++|+++++...  . ..++||
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  115 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID  115 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence            37899999999999999999876 8899999999999999999999886  2458999999999876431  0 026899


Q ss_pred             EEEEcCcc---cHHHHHHHHccccccCeEEEE
Q 022962          195 VAVARAVA---EMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       195 ~V~sn~~~---~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      +|+++...   ++..+++++.++|+|||.+++
T Consensus       116 ~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          116 MITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            99998421   789999999999999999987

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.63  E-value=2.7e-15  Score=136.97  Aligned_cols=146  Identities=14%  Similarity=0.062  Sum_probs=107.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc--C--CCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--Q--LLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~--~--l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.+|||||||+|.++..+++..+..+|+++|+|+.+++.|+++....  +  ..+++++++|+.+....  .+++||+|+
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fDvIi  194 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN--VTNTYDVII  194 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH--CCSCEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh--cCCCceEEE
Confidence            57999999999999999987667789999999999999999987652  2  24799999998774211  136899999


Q ss_pred             EcCcc------cH--HHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCC-CceEEEE
Q 022962          198 ARAVA------EM--RILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPF-GQRTAVV  266 (289)
Q Consensus       198 sn~~~------~~--~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~-~~r~lv~  266 (289)
                      ++...      ..  ..+++.+.++|+|||.+++..+.  ...+.+..+.+.++.. |..++......|.-. +.+..++
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~vp~~~~g~w~f~~  273 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEYANISIPTYPCGCIGILC  273 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT-CSEEEEEEEECTTSGGGEEEEEE
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCCeEEEEEEeccccCceEEEEE
Confidence            98532      11  78999999999999999987643  3556677777777665 444555444344433 3444555


Q ss_pred             EEec
Q 022962          267 CLKS  270 (289)
Q Consensus       267 ~~k~  270 (289)
                      +.+.
T Consensus       274 as~~  277 (321)
T 2pt6_A          274 CSKT  277 (321)
T ss_dssp             EESS
T ss_pred             eeCC
Confidence            5543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.63  E-value=4.9e-16  Score=136.31  Aligned_cols=104  Identities=19%  Similarity=0.167  Sum_probs=88.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCc---CCCCceE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVS---FREQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~---~~~~fD~  195 (289)
                      ++.+|||||||+|..++.+|...+ +++|+++|+++++++.|+++++..++. +|+++++|+.+......   ..++||+
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~  139 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF  139 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence            367999999999999999998875 789999999999999999999999985 79999999977532100   0268999


Q ss_pred             EEEcCc-ccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAV-AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~-~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |++++. ..+..+++.+.++|+|||.+++.
T Consensus       140 V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          140 IFIDADKTNYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             EEEESCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEcCChHHhHHHHHHHHHhcCCCeEEEEE
Confidence            999864 46788999999999999999874

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=2.6e-15  Score=131.38  Aligned_cols=97  Identities=18%  Similarity=0.132  Sum_probs=85.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..+|+.+|+|+|+|+.+++.++++     ..+++++++|+++++ .   +++||+|+++.
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~-~---~~~fD~v~~~~  103 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK-P---AQKADLLYANA  103 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC-C---SSCEEEEEEES
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC-c---cCCcCEEEEeC
Confidence            36799999999999999999888889999999999999999886     347999999999876 2   37899999985


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEc
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                          +.+...+++++.++|+|||++++...
T Consensus       104 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A          104 VFQWVPDHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             CGGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             chhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence                35789999999999999999998753

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.63  E-value=9.3e-16  Score=131.86  Aligned_cols=103  Identities=22%  Similarity=0.282  Sum_probs=87.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcC---CCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSF---REQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~---~~~fD~V  196 (289)
                      +.+|||||||+|..++.++...| +.+|+++|+|+.+++.|+++++..++.+ ++++++|+.+.......   .++||+|
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v  144 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI  144 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence            67999999999999999998876 7899999999999999999999999865 99999999764211000   1689999


Q ss_pred             EEcCc-ccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAV-AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~-~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ++++. ..+..+++.+.++|+|||++++.
T Consensus       145 ~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          145 YIDADKANTDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             EECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            99864 45889999999999999999874

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.63  E-value=3.3e-15  Score=136.01  Aligned_cols=129  Identities=19%  Similarity=0.197  Sum_probs=100.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..++.+|||+|||+|..++.+|...+ .++|+|+|+|+.+++.++++++.+|+.|++++++|+.++..   .+++||+|+
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~---~~~~fD~Il  192 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE---LNVEFDKIL  192 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG---GCCCEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc---ccccCCEEE
Confidence            44588999999999999999998764 58999999999999999999999999899999999988754   236899999


Q ss_pred             EcCcc--------------------------cHHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHhCCeEeEE
Q 022962          198 ARAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       198 sn~~~--------------------------~~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                      +++..                          ....+++.+.++|||||++++..-. ...+.-..+...++..||+++.+
T Consensus       193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~~~~  272 (315)
T 1ixk_A          193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELLPL  272 (315)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEECC
T ss_pred             EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEEecC
Confidence            97320                          0158999999999999999885432 22221122334556788766544

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.62  E-value=4.8e-15  Score=132.78  Aligned_cols=143  Identities=13%  Similarity=0.112  Sum_probs=107.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc--C---------CCCEEEEeccccccCCCCcCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--Q---------LLNVQIVRGRAETLGKDVSFR  190 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~--~---------l~ni~~~~~d~~~~~~~~~~~  190 (289)
                      +.+|||||||+|..+..+++. +..+|++||+|+.+++.|+++. ..  +         ..+++++++|+.++...   +
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~---~  150 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN---N  150 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH---C
T ss_pred             CCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc---c
Confidence            579999999999999999877 7789999999999999999987 43  2         24799999998764221   3


Q ss_pred             CCceEEEEcCcc------c--HHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCC
Q 022962          191 EQYDVAVARAVA------E--MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFG  260 (289)
Q Consensus       191 ~~fD~V~sn~~~------~--~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~  260 (289)
                      ++||+|+++...      .  ...+++.+.++|+|||.+++..+.  ...+.+..+.+.++.. |..+.......|...+
T Consensus       151 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~~~~~~vP~~~g  229 (281)
T 1mjf_A          151 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVYYYSFPVIGYAS  229 (281)
T ss_dssp             CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEEEEEECCTTSSS
T ss_pred             CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCceEEEEEecCCCCc
Confidence            689999998642      1  378899999999999999987543  3455666666666666 5444544333455456


Q ss_pred             ceEEEEEEec
Q 022962          261 QRTAVVCLKS  270 (289)
Q Consensus       261 ~r~lv~~~k~  270 (289)
                      .+..+++.|.
T Consensus       230 ~~~~~~as~~  239 (281)
T 1mjf_A          230 PWAFLVGVKG  239 (281)
T ss_dssp             SEEEEEEEES
T ss_pred             eEEEEEeeCC
Confidence            6777777765

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.62  E-value=7.3e-16  Score=142.27  Aligned_cols=98  Identities=20%  Similarity=0.279  Sum_probs=85.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.+++.+++. +..+|+|+|+|+ +++.|+++++.+++.+ ++++++|+++++.+   +++||+|+++
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~Iis~  140 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELP---VEKVDIIISE  140 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS---SSCEEEEEEC
T ss_pred             CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCC---CCceEEEEEc
Confidence            3789999999999999999976 667999999995 9999999999999875 99999999998543   3789999997


Q ss_pred             Cc-------ccHHHHHHHHccccccCeEEEE
Q 022962          200 AV-------AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       200 ~~-------~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      .+       ..+..+++.+.++|||||.++.
T Consensus       141 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          141 WMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             CCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            42       4678999999999999999873

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.62  E-value=6.2e-16  Score=136.49  Aligned_cols=123  Identities=15%  Similarity=0.029  Sum_probs=95.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++.  ++.+|+|+|+|+.+++.++++.      |++++++|+++++..   +++||+|+++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~---~~~fD~v~~~~  102 (261)
T 3ege_A           34 KGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALP---DKSVDGVISIL  102 (261)
T ss_dssp             TTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSC---TTCBSEEEEES
T ss_pred             CCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCC---CCCEeEEEEcc
Confidence            378999999999999999986  6789999999999988776532      799999999987643   37899999985


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEcCC----------cHH-----------HHHHHHHHHHHhCCeEeEEeeeec
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKGHD----------PQE-----------EVKNSERAVQLMGASLLQLCSVES  255 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g~~----------~~~-----------ei~~~~~~l~~~g~~~~~~~~~~~  255 (289)
                          +.++..+++++.++|| ||++++.....          ...           ....+. .++++||..+++..+..
T Consensus       103 ~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~~~~  180 (261)
T 3ege_A          103 AIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIPFLL  180 (261)
T ss_dssp             CGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEECCE
T ss_pred             hHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEEecC
Confidence                4578999999999999 99777654220          000           123345 78899998888776543


Q ss_pred             C
Q 022962          256 Q  256 (289)
Q Consensus       256 ~  256 (289)
                      |
T Consensus       181 p  181 (261)
T 3ege_A          181 P  181 (261)
T ss_dssp             E
T ss_pred             C
Confidence            3

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.62  E-value=2.9e-15  Score=130.27  Aligned_cols=122  Identities=11%  Similarity=0.087  Sum_probs=94.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.++++        ++++++|+.++..+ ..+++||+|+++.
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~-~~~~~fD~i~~~~  109 (240)
T 3dli_A           41 GCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKS-LPDKYLDGVMISH  109 (240)
T ss_dssp             TCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHT-SCTTCBSEEEEES
T ss_pred             CCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhh-cCCCCeeEEEECC
Confidence            4789999999999999999876  56899999999999988874        78889999875211 1137899999984


Q ss_pred             ----cc--cHHHHHHHHccccccCeEEEEEEcCC-cHH---------------HHHHHHHHHHHhCCeEeEEeee
Q 022962          201 ----VA--EMRILAEYCLPLVRVGGLFVAAKGHD-PQE---------------EVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       201 ----~~--~~~~ll~~~~~~LkpgG~l~~~~g~~-~~~---------------ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                          +.  ++..+++++.++|||||++++..... ...               ...++.+.++.+||.++++..+
T Consensus       110 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~  184 (240)
T 3dli_A          110 FVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFF  184 (240)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEE
T ss_pred             chhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEe
Confidence                23  56899999999999999999865321 111               1134566778999998888765

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.62  E-value=6.8e-15  Score=125.16  Aligned_cols=95  Identities=16%  Similarity=0.100  Sum_probs=81.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.+++    .+..+++++++|+.++ ..   +++||+|+++.
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~-~~---~~~~D~v~~~~  115 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW-TP---DRQWDAVFFAH  115 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC-CC---SSCEEEEEEES
T ss_pred             CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC-CC---CCceeEEEEec
Confidence            4679999999999999999987  6799999999999999987    5667899999999887 22   37899999985


Q ss_pred             c----cc--HHHHHHHHccccccCeEEEEEE
Q 022962          201 V----AE--MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ~----~~--~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +    .+  ...+++++.++|+|||.+++..
T Consensus       116 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  146 (218)
T 3ou2_A          116 WLAHVPDDRFEAFWESVRSAVAPGGVVEFVD  146 (218)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            2    22  4889999999999999999764

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.62  E-value=4.2e-15  Score=128.38  Aligned_cols=92  Identities=14%  Similarity=0.174  Sum_probs=78.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-C
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-A  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn-~  200 (289)
                      +.+|||+|||+|..+..++...+  +|+|+|+|+.+++.++++.     .+++++++|+.+++.    +++||+|+|. .
T Consensus        41 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~----~~~~D~v~~~~~  109 (239)
T 3bxo_A           41 ASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL----GRKFSAVVSMFS  109 (239)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC----SSCEEEEEECTT
T ss_pred             CCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc----CCCCcEEEEcCc
Confidence            67999999999999999998754  9999999999999998753     468999999988754    3789999953 2


Q ss_pred             ----c---ccHHHHHHHHccccccCeEEEEE
Q 022962          201 ----V---AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       201 ----~---~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                          +   .+...+++.+.++|+|||.+++.
T Consensus       110 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (239)
T 3bxo_A          110 SVGYLKTTEELGAAVASFAEHLEPGGVVVVE  140 (239)
T ss_dssp             GGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             hHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                2   45678999999999999999875

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.62  E-value=3.9e-15  Score=132.77  Aligned_cols=98  Identities=22%  Similarity=0.325  Sum_probs=86.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.+++++...++ +++++++|+.++..    +++||+|+++.
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~----~~~fD~i~~~~  192 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI----QENYDFIVSTV  192 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC----CSCEEEEEECS
T ss_pred             CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc----cCCccEEEEcc
Confidence            3789999999999999999976  56999999999999999999999988 89999999998754    37899999985


Q ss_pred             c------ccHHHHHHHHccccccCeEEEEEE
Q 022962          201 V------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ~------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +      .....+++.+.++|+|||.+++..
T Consensus       193 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          193 VFMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             SGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             chhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            3      346799999999999999987754

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.62  E-value=6.8e-15  Score=131.46  Aligned_cols=146  Identities=18%  Similarity=0.126  Sum_probs=108.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc--CC--CCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QL--LNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~--~l--~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.+|||||||+|..+..+++..+..+|++||+|+.+++.|+++....  ++  ++++++++|+.+....  .+++||+|+
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~--~~~~fD~Ii  153 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK--SENQYDVIM  153 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT--CCSCEEEEE
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh--CCCCeeEEE
Confidence            57999999999999999887656789999999999999999987542  23  4799999998874221  136899999


Q ss_pred             EcCccc--------HHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCC-CCceEEEE
Q 022962          198 ARAVAE--------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSP-FGQRTAVV  266 (289)
Q Consensus       198 sn~~~~--------~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~-~~~r~lv~  266 (289)
                      ++....        ...+++.+.++|+|||.+++..+.  ...+.+..+.+.+++. |..+.......|.- .+.+..++
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~vp~~~~g~w~~~~  232 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPITKLYTANIPTYPSGLWTFTI  232 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEEECCTTSGGGCEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCeEEEEEecCcccCcceEEEE
Confidence            985432        268999999999999999987543  2356667777777766 55555544333442 35666666


Q ss_pred             EEec
Q 022962          267 CLKS  270 (289)
Q Consensus       267 ~~k~  270 (289)
                      +.|.
T Consensus       233 ask~  236 (275)
T 1iy9_A          233 GSKK  236 (275)
T ss_dssp             EESS
T ss_pred             eeCC
Confidence            6654

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.62  E-value=3.4e-15  Score=133.53  Aligned_cols=125  Identities=16%  Similarity=0.161  Sum_probs=98.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      .++|.+|||+|||+|.+++.+|.. +..+|+|+|+|+.+++.+++|++.+++++ ++++++|+.++..    .+.||.|+
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~----~~~~D~Vi  197 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----ENIADRIL  197 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----CSCEEEEE
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc----ccCCCEEE
Confidence            456899999999999999999976 46799999999999999999999999975 9999999988754    36899999


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEEEc----CCcHHHHHHHHHHHHHhCCeEe
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAAKG----HDPQEEVKNSERAVQLMGASLL  248 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~g----~~~~~ei~~~~~~l~~~g~~~~  248 (289)
                      +|.......++..+.++||+||++.+..-    .........+.+..+..|+.+.
T Consensus       198 ~~~p~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~  252 (278)
T 3k6r_A          198 MGYVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE  252 (278)
T ss_dssp             ECCCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred             ECCCCcHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEE
Confidence            99766666788888899999999865421    1111112333445567888653

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.62  E-value=1.1e-15  Score=125.31  Aligned_cols=103  Identities=25%  Similarity=0.319  Sum_probs=83.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC-CCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~-~~~~~~~fD~V~sn~  200 (289)
                      +.+|||+|||+|.+++.++...  .+|+|+|+|+.+++.|+++++.+++ +++++++|+.+... .....++||+|+++.
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            6799999999999999999764  3599999999999999999999888 89999999987421 100124799999985


Q ss_pred             c--ccHHHHHHHHc--cccccCeEEEEEEcC
Q 022962          201 V--AEMRILAEYCL--PLVRVGGLFVAAKGH  227 (289)
Q Consensus       201 ~--~~~~~ll~~~~--~~LkpgG~l~~~~g~  227 (289)
                      .  ...+.+++.+.  ++|+|||.+++....
T Consensus       119 ~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          119 PYAMDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             CTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             CCchhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence            2  45566777777  999999999987754

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.62  E-value=2.3e-15  Score=128.49  Aligned_cols=131  Identities=18%  Similarity=0.124  Sum_probs=97.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++     .+|+|+|+|+.               +++++++|+.+++..   +++||+|+++.
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------------~~~~~~~d~~~~~~~---~~~fD~v~~~~  123 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------------DPRVTVCDMAQVPLE---DESVDVAVFCL  123 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------------STTEEESCTTSCSCC---TTCEEEEEEES
T ss_pred             CCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------------CceEEEeccccCCCC---CCCEeEEEEeh
Confidence            36799999999999876652     69999999986               467889999886543   36899999985


Q ss_pred             c---ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecCCCCCCC
Q 022962          201 V---AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKY  277 (289)
Q Consensus       201 ~---~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~~~p~~~  277 (289)
                      +   .+...+++++.++|+|||.+++...........++.+.++..||.+++..     ...+...+++++|....+.++
T Consensus       124 ~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-----~~~~~~~~~~~~k~~~~~~~~  198 (215)
T 2zfu_A          124 SLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKD-----LTNSHFFLFDFQKTGPPLVGP  198 (215)
T ss_dssp             CCCSSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEE-----CCSTTCEEEEEEECSSCSSCT
T ss_pred             hccccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEe-----cCCCeEEEEEEEecCccccch
Confidence            4   57889999999999999999986532211123444556779999887653     233456788888876666543


Q ss_pred             CC
Q 022962          278 PR  279 (289)
Q Consensus       278 pr  279 (289)
                      ++
T Consensus       199 ~~  200 (215)
T 2zfu_A          199 KA  200 (215)
T ss_dssp             TC
T ss_pred             hh
Confidence            33

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.62  E-value=2.6e-15  Score=127.70  Aligned_cols=101  Identities=19%  Similarity=0.248  Sum_probs=85.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .++.+|||+|||+|..+..++..  +.+|+++|+|+.+++.++++.+.+++++++++++|+.+....   .++||+|+++
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~i~~~  150 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA---RAPFDAIIVT  150 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---GCCEEEEEES
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc---CCCccEEEEc
Confidence            45789999999999999999987  689999999999999999999999988999999999875432   3789999998


Q ss_pred             CcccHHHHHHHHccccccCeEEEEEEcC
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      ....  .+.+.+.++|+|||++++..+.
T Consensus       151 ~~~~--~~~~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          151 AAPP--EIPTALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             SBCS--SCCTHHHHTEEEEEEEEEEECS
T ss_pred             cchh--hhhHHHHHhcccCcEEEEEEcC
Confidence            5331  1223577899999999998765

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.61  E-value=3.1e-15  Score=127.38  Aligned_cols=102  Identities=13%  Similarity=0.048  Sum_probs=84.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||+|||+|.+++.++... ..+|+|+|+|+.+++.|+++++.+++++++++++|+.++...  ..++||+|+++..
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~~~fD~V~~~~p  131 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ--KGTPHNIVFVDPP  131 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS--CCCCEEEEEECCS
T ss_pred             CCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh--cCCCCCEEEECCC
Confidence            6799999999999999877553 359999999999999999999999988899999999874221  1368999999854


Q ss_pred             ---ccHHHHHHHHc--cccccCeEEEEEEc
Q 022962          202 ---AEMRILAEYCL--PLVRVGGLFVAAKG  226 (289)
Q Consensus       202 ---~~~~~ll~~~~--~~LkpgG~l~~~~g  226 (289)
                         .....+++.+.  ++|+|||.+++...
T Consensus       132 ~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          132 FRRGLLEETINLLEDNGWLADEALIYVESE  161 (202)
T ss_dssp             SSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CCCCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence               35567777775  46999999998764

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.61  E-value=1.1e-14  Score=134.31  Aligned_cols=128  Identities=13%  Similarity=0.158  Sum_probs=102.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .++.+|||||||+|.++..++..+|+.+++++|+ +.+++.++++++..++.+ ++++.+|+.+.+.     ..+|+|++
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~v~~  262 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-----PEADAVLF  262 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-----CCCSEEEE
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-----CCCCEEEE
Confidence            3578999999999999999999999999999999 999999999999888765 9999999987643     23499998


Q ss_pred             cCc----cc--HHHHHHHHccccccCeEEEEEEcC---------------------CcH----HHHHHHHHHHHHhCCeE
Q 022962          199 RAV----AE--MRILAEYCLPLVRVGGLFVAAKGH---------------------DPQ----EEVKNSERAVQLMGASL  247 (289)
Q Consensus       199 n~~----~~--~~~ll~~~~~~LkpgG~l~~~~g~---------------------~~~----~ei~~~~~~l~~~g~~~  247 (289)
                      +.+    .+  ...+++++.++|+|||++++....                     ...    ....++.+.++++||+.
T Consensus       263 ~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~  342 (359)
T 1x19_A          263 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKD  342 (359)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEE
T ss_pred             echhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCce
Confidence            742    23  688999999999999999775410                     000    12234556777999998


Q ss_pred             eEEeee
Q 022962          248 LQLCSV  253 (289)
Q Consensus       248 ~~~~~~  253 (289)
                      +++..+
T Consensus       343 v~~~~~  348 (359)
T 1x19_A          343 VTMVRK  348 (359)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            888754

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.61  E-value=1e-14  Score=132.73  Aligned_cols=128  Identities=17%  Similarity=0.159  Sum_probs=102.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .++.+|||+|||+|..+..++..+|+.+++++|++ .+++.+++++...++. +++++.+|+.+.+.    ++.||+|++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~v~~  238 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY----GNDYDLVLL  238 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC----CSCEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC----CCCCcEEEE
Confidence            34789999999999999999999999999999999 9999999999988875 59999999987543    245999999


Q ss_pred             cCc------ccHHHHHHHHccccccCeEEEEEEcCCc------H-H-----------------HHHHHHHHHHHhCCeEe
Q 022962          199 RAV------AEMRILAEYCLPLVRVGGLFVAAKGHDP------Q-E-----------------EVKNSERAVQLMGASLL  248 (289)
Q Consensus       199 n~~------~~~~~ll~~~~~~LkpgG~l~~~~g~~~------~-~-----------------ei~~~~~~l~~~g~~~~  248 (289)
                      +.+      .+...+++++.++|+|||++++......      . .                 ...++.+.++++||+.+
T Consensus       239 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~  318 (335)
T 2r3s_A          239 PNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHS  318 (335)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEE
T ss_pred             cchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCee
Confidence            642      3457999999999999999887643111      0 0                 13445667789999988


Q ss_pred             EEee
Q 022962          249 QLCS  252 (289)
Q Consensus       249 ~~~~  252 (289)
                      ++..
T Consensus       319 ~~~~  322 (335)
T 2r3s_A          319 QLHS  322 (335)
T ss_dssp             EEEC
T ss_pred             eEEE
Confidence            8764

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.61  E-value=4.2e-15  Score=132.93  Aligned_cols=149  Identities=13%  Similarity=0.053  Sum_probs=101.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc-----------------CC-------------
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-----------------QL-------------  170 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-----------------~l-------------  170 (289)
                      ++.+|||||||+|..++.++. .+..+|+|+|+|+.|++.|+++++..                 +.             
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSAC-SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGG-GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhc-cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            367999999999996554443 34679999999999999998865421                 10             


Q ss_pred             CCEEEEeccccc-cCCCC--cCCCCceEEEEcC--------cccHHHHHHHHccccccCeEEEEEE---------cC---
Q 022962          171 LNVQIVRGRAET-LGKDV--SFREQYDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAK---------GH---  227 (289)
Q Consensus       171 ~ni~~~~~d~~~-~~~~~--~~~~~fD~V~sn~--------~~~~~~ll~~~~~~LkpgG~l~~~~---------g~---  227 (289)
                      ..++++++|+.+ ++...  ..+++||+|+|+.        ..++..+++++.++|||||+|++..         +.   
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~  229 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL  229 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence            015677889887 43211  1135799999984        3367899999999999999999752         10   


Q ss_pred             -CcHHHHHHHHHHHHHhCCeEeEEeeeecC----C--CCCceEEEEEEec
Q 022962          228 -DPQEEVKNSERAVQLMGASLLQLCSVESQ----S--PFGQRTAVVCLKS  270 (289)
Q Consensus       228 -~~~~ei~~~~~~l~~~g~~~~~~~~~~~~----~--~~~~r~lv~~~k~  270 (289)
                       ...-...++.+.++..||.++++..+..+    .  .+-.+.++++.|+
T Consensus       230 ~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (289)
T 2g72_A          230 TVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQK  279 (289)
T ss_dssp             ECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEE
T ss_pred             eeccCCHHHHHHHHHHcCCeEEEeeEeeccccccccccCcceEEEEEEec
Confidence             00012234556677999999888766521    1  2335677777665

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.61  E-value=2.8e-15  Score=136.50  Aligned_cols=146  Identities=12%  Similarity=0.041  Sum_probs=105.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH--cC---CCCEEEEeccccccCCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL--TQ---LLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~--~~---l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      +.+|||||||+|..+..+++..+..+|++||+|+.+++.|+++...  .+   ..+++++++|+.+....  .+++||+|
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD~I  155 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER--TEERYDVV  155 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH--CCCCEEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh--cCCCccEE
Confidence            5799999999999999998766778999999999999999998765  22   35799999999874211  13789999


Q ss_pred             EEcCccc-----------HHHHHHHHccccccCeEEEEEEcC---CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCce
Q 022962          197 VARAVAE-----------MRILAEYCLPLVRVGGLFVAAKGH---DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQR  262 (289)
Q Consensus       197 ~sn~~~~-----------~~~ll~~~~~~LkpgG~l~~~~g~---~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r  262 (289)
                      +++....           ...+++.+.++|+|||.+++..+.   ...+.+..+.+.++.. |..+.......|...+.+
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~vP~~~g~~  234 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRSYKNHIPGFFLNF  234 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEEEEEEEGGGTEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH-CCceEEEEEecCCCCCeE
Confidence            9985332           378999999999999999987543   2234455556666655 444444433335444556


Q ss_pred             EEEEEEec
Q 022962          263 TAVVCLKS  270 (289)
Q Consensus       263 ~lv~~~k~  270 (289)
                      ..+++.|.
T Consensus       235 ~~~~as~~  242 (314)
T 1uir_A          235 GFLLASDA  242 (314)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEECC
Confidence            66666554

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.61  E-value=9.5e-15  Score=128.07  Aligned_cols=131  Identities=14%  Similarity=0.113  Sum_probs=96.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-----------------------------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-----------------------------LN  172 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-----------------------------~n  172 (289)
                      +.+|||||||+|.+++.++...+ .+|+|+|+|+.+++.++++....+.                             .+
T Consensus        57 ~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  135 (265)
T 2i62_A           57 GELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA  135 (265)
T ss_dssp             EEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence            67999999999999988886543 5999999999999999988765431                             02


Q ss_pred             E-EEEeccccccCC-CCcCCCCceEEEEcCc--------ccHHHHHHHHccccccCeEEEEEEcCC-------------c
Q 022962          173 V-QIVRGRAETLGK-DVSFREQYDVAVARAV--------AEMRILAEYCLPLVRVGGLFVAAKGHD-------------P  229 (289)
Q Consensus       173 i-~~~~~d~~~~~~-~~~~~~~fD~V~sn~~--------~~~~~ll~~~~~~LkpgG~l~~~~g~~-------------~  229 (289)
                      + +++++|+.+... .....++||+|+++.+        .++..+++++.++|||||++++.....             .
T Consensus       136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~  215 (265)
T 2i62_A          136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSL  215 (265)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred             heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccccc
Confidence            7 899999987643 1111268999999742        257899999999999999999754110             0


Q ss_pred             HHHHHHHHHHHHHhCCeEeEEeee
Q 022962          230 QEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       230 ~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      .-...++.+.+..+||.++++...
T Consensus       216 ~~~~~~~~~~l~~aGf~~~~~~~~  239 (265)
T 2i62_A          216 PLGWETVRDAVEEAGYTIEQFEVI  239 (265)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ccCHHHHHHHHHHCCCEEEEEEEe
Confidence            001224455677999999888755

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.61  E-value=5e-15  Score=136.00  Aligned_cols=122  Identities=12%  Similarity=0.104  Sum_probs=97.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .++.+|||+|||+|.+++. |.  ++.+|+|+|+|+.+++.|++|++.+++ ++++++++|+.++.      ++||+|++
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~------~~fD~Vi~  264 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD------VKGNRVIM  264 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC------CCEEEEEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc------CCCcEEEE
Confidence            4688999999999999999 76  478999999999999999999999998 47999999998864      57999999


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHh-CCeEeEEeee
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLM-GASLLQLCSV  253 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~-g~~~~~~~~~  253 (289)
                      +.......+++.+.++|+|||.+++.......++.   .+.+... ++++..+..+
T Consensus       265 dpP~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~---~~~l~~~~~~~i~~~~~v  317 (336)
T 2yx1_A          265 NLPKFAHKFIDKALDIVEEGGVIHYYTIGKDFDKA---IKLFEKKCDCEVLEKRIV  317 (336)
T ss_dssp             CCTTTGGGGHHHHHHHEEEEEEEEEEEEESSSHHH---HHHHHHHSEEEEEEEEEE
T ss_pred             CCcHhHHHHHHHHHHHcCCCCEEEEEEeecCchHH---HHHHHHhcCCcEEEEEEE
Confidence            96555568899999999999998875432223333   3344455 7776655544

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.61  E-value=1.1e-15  Score=135.31  Aligned_cols=93  Identities=22%  Similarity=0.160  Sum_probs=79.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||||||+|..+..|+..  ..+|+|||+|+.|++.|++      ..+++++++|+++++.+   +++||+|+|.. 
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~~~---~~sfD~v~~~~~  108 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTGLP---PASVDVAIAAQA  108 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCCCC---SSCEEEEEECSC
T ss_pred             CCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhccc---CCcccEEEEeee
Confidence            569999999999999999865  4699999999999987653      34799999999998764   47999999984 


Q ss_pred             --cccHHHHHHHHccccccCeEEEEEE
Q 022962          201 --VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 --~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                        ..+.+.+++++.++|||||+|++..
T Consensus       109 ~h~~~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          109 MHWFDLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             CTTCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhHhhHHHHHHHHHHHcCCCCEEEEEE
Confidence              2367899999999999999998754

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.60  E-value=6.8e-15  Score=121.87  Aligned_cols=126  Identities=16%  Similarity=0.037  Sum_probs=92.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||+|||+|.+++.++...   +|+|+|+|+.|++.         ..+++++++|+.+...    +++||+|++|..
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~~----~~~fD~i~~n~~   87 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---------HRGGNLVRADLLCSIN----QESVDVVVFNPP   87 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---------CSSSCEEECSTTTTBC----GGGCSEEEECCC
T ss_pred             CCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---------ccCCeEEECChhhhcc----cCCCCEEEECCC
Confidence            6799999999999999998764   99999999999876         3478999999987322    268999999842


Q ss_pred             c-------------cHHHHHHHHccccccCeEEEEEE-cCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEE
Q 022962          202 A-------------EMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVC  267 (289)
Q Consensus       202 ~-------------~~~~ll~~~~~~LkpgG~l~~~~-g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~  267 (289)
                      -             +...+++.+.+.+ |||.+++.. +....+++   .+.+++.||....+....    .+...++..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l---~~~l~~~gf~~~~~~~~~----~~~e~~~~~  159 (170)
T 3q87_B           88 YVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEV---LARLEERGYGTRILKVRK----ILGETVYII  159 (170)
T ss_dssp             CBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHH---HHHHHHTTCEEEEEEEEE----CSSSEEEEE
T ss_pred             CccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHH---HHHHHHCCCcEEEEEeec----cCCceEEEE
Confidence            1             2346677777777 999999865 33444444   445668999988776542    233445555


Q ss_pred             EecC
Q 022962          268 LKSR  271 (289)
Q Consensus       268 ~k~~  271 (289)
                      +.++
T Consensus       160 ~~~~  163 (170)
T 3q87_B          160 KGEK  163 (170)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            5443

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.60  E-value=1.8e-14  Score=134.04  Aligned_cols=128  Identities=9%  Similarity=0.128  Sum_probs=99.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+| |+|.+++.++...+..+|+|+|+|+.+++.|+++++.+|+++++++++|+.+ ++..  .+++||+|++|
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~--~~~~fD~Vi~~  248 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY--ALHKFDTFITD  248 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT--TSSCBSEEEEC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh--ccCCccEEEEC
Confidence            378999999 9999999999887778999999999999999999999998889999999988 5421  23689999999


Q ss_pred             Cc---ccHHHHHHHHccccccCeE-EEEEEcC--CcHHHHHHHHHHHH-HhCCeEeEEe
Q 022962          200 AV---AEMRILAEYCLPLVRVGGL-FVAAKGH--DPQEEVKNSERAVQ-LMGASLLQLC  251 (289)
Q Consensus       200 ~~---~~~~~ll~~~~~~LkpgG~-l~~~~g~--~~~~ei~~~~~~l~-~~g~~~~~~~  251 (289)
                      ..   .....+++.+.++|+|||+ +++....  ........+.+.+. ..|+.+..+.
T Consensus       249 ~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  307 (373)
T 2qm3_A          249 PPETLEAIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITDII  307 (373)
T ss_dssp             CCSSHHHHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhhh
Confidence            53   2357899999999999994 3554443  33322233445566 7788765543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.60  E-value=2.3e-15  Score=128.37  Aligned_cols=100  Identities=16%  Similarity=0.162  Sum_probs=86.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +.+|||||||+|..++.++...+ +.+|+++|+|+.+++.|+++++..++. +++++++|+.+....  .++ ||+|+++
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~-fD~v~~~  133 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG--QRD-IDILFMD  133 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT--CCS-EEEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc--CCC-CCEEEEc
Confidence            67999999999999999998876 789999999999999999999988875 599999999775221  235 9999998


Q ss_pred             C-cccHHHHHHHHccccccCeEEEEE
Q 022962          200 A-VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ~-~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      . ..++..+++.+.++|+|||.+++.
T Consensus       134 ~~~~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          134 CDVFNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             TTTSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CChhhhHHHHHHHHHhcCCCeEEEEE
Confidence            5 457889999999999999999874

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.60  E-value=6.3e-15  Score=127.58  Aligned_cols=98  Identities=20%  Similarity=0.174  Sum_probs=81.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|..+..++.. +..+|+|+|+|+.+++.++++...   .+++++++|+.+++..   +++||+|+++.
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~---~~~fD~v~~~~  115 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLP---QDSFDLAYSSL  115 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCC---TTCEEEEEEES
T ss_pred             CCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCC---CCCceEEEEec
Confidence            3679999999999999998876 334999999999999999876432   3699999999887542   37899999974


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEE
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                          +.+...+++++.++|+|||++++..
T Consensus       116 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          116 ALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence                3467899999999999999999854

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.60  E-value=1.3e-14  Score=123.68  Aligned_cols=97  Identities=16%  Similarity=0.175  Sum_probs=82.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..  ..+|+|+|+|+.+++.++++....+  +++++++|+.++..    +++||+|+++.
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~----~~~fD~v~~~~  122 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFST----AELFDLIVVAE  122 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCCC----SCCEEEEEEES
T ss_pred             CCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCCC----CCCccEEEEcc
Confidence            3679999999999999999876  4699999999999999999877644  89999999998863    37899999984


Q ss_pred             c----cc---HHHHHHHHccccccCeEEEEEE
Q 022962          201 V----AE---MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ~----~~---~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +    .+   +..+++++.++|||||.+++..
T Consensus       123 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          123 VLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             CGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            2    23   3677999999999999999864

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.60  E-value=5e-15  Score=128.26  Aligned_cols=103  Identities=23%  Similarity=0.406  Sum_probs=88.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||+|||+|..++.++...|+.+|+++|+|+.+++.|+++++..++. +++++++|+.+.......+++||+|+++.
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  134 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA  134 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence            67999999999999999999988899999999999999999999999885 59999999987421100036899999986


Q ss_pred             c-ccHHHHHHHHccccccCeEEEEE
Q 022962          201 V-AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       201 ~-~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      . ..+..+++.+.++|+|||.+++.
T Consensus       135 ~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          135 AKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             GGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            4 46789999999999999999875

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.60  E-value=2.1e-14  Score=131.44  Aligned_cols=121  Identities=13%  Similarity=0.119  Sum_probs=92.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcC-----------CCCEEEEeccccccCCCCc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQ-----------LLNVQIVRGRAETLGKDVS  188 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~-----------l~ni~~~~~d~~~~~~~~~  188 (289)
                      ++.+|||+|||+|.+++.++.. .|..+|+++|+++.+++.|+++++..+           ..+++++++|+.+.... .
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~-~  183 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED-I  183 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc-c
Confidence            4789999999999999999987 466899999999999999999988643           25799999999876321 1


Q ss_pred             CCCCceEEEEcCcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCC
Q 022962          189 FREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA  245 (289)
Q Consensus       189 ~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~  245 (289)
                      .+++||+|+++... ...+++.+.++|+|||.+++..+  ..+.+.++.+.++..+.
T Consensus       184 ~~~~fD~V~~~~~~-~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~~~  237 (336)
T 2b25_A          184 KSLTFDAVALDMLN-PHVTLPVFYPHLKHGGVCAVYVV--NITQVIELLDGIRTCEL  237 (336)
T ss_dssp             ----EEEEEECSSS-TTTTHHHHGGGEEEEEEEEEEES--SHHHHHHHHHHHHHHTC
T ss_pred             CCCCeeEEEECCCC-HHHHHHHHHHhcCCCcEEEEEeC--CHHHHHHHHHHHHhcCC
Confidence            13579999998543 34588999999999999998765  34455555666665443

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.60  E-value=1.7e-15  Score=133.20  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=88.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCc----CCCCceE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVS----FREQYDV  195 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~----~~~~fD~  195 (289)
                      +.+|||||||+|..++.+|...| +++|+++|+|+++++.|+++++..++. +|+++++|+.+......    ..++||+
T Consensus        80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~  159 (247)
T 1sui_A           80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF  159 (247)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred             cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence            67999999999999999999877 789999999999999999999999884 69999999976421100    0368999


Q ss_pred             EEEcC-cccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARA-VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~-~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |++++ ..++..+++.+.++|+|||.+++.
T Consensus       160 V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          160 IFVDADKDNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             EEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEEcCchHHHHHHHHHHHHhCCCCeEEEEe
Confidence            99986 457889999999999999999874

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.60  E-value=5.2e-15  Score=137.91  Aligned_cols=103  Identities=14%  Similarity=0.134  Sum_probs=88.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC---CEEEEeccccccCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL---NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~---ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      .+.+|||+|||+|.+++.++...|+.+|+|+|+|+.+++.++++++.+++.   +++++.+|+.+...    +++||+|+
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~----~~~fD~Ii  297 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE----PFRFNAVL  297 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC----TTCEEEEE
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC----CCCeeEEE
Confidence            357999999999999999999999999999999999999999999998875   58999999987322    36899999


Q ss_pred             EcCc---------ccHHHHHHHHccccccCeEEEEEEcC
Q 022962          198 ARAV---------AEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       198 sn~~---------~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      +|..         .....+++++.++|+|||.+++....
T Consensus       298 ~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          298 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             ECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             ECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence            9842         12357899999999999999987543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.60  E-value=8.8e-15  Score=135.52  Aligned_cols=143  Identities=8%  Similarity=0.036  Sum_probs=108.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ...+|||||||+|.++..++..+|+.+++++|+ +.+++.|++++...++ ++|+++.+|+.+...+  ++++||+|+++
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~p~~~D~v~~~  255 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP--FPTGFDAVWMS  255 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC--CCCCCSEEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC--CCCCcCEEEEe
Confidence            367999999999999999999999999999999 9999999999888876 4699999999875200  12689999987


Q ss_pred             Cc------ccHHHHHHHHccccccCeEEEEEEc---CCc-HH-----------------------HHHHHHHHHHHhCCe
Q 022962          200 AV------AEMRILAEYCLPLVRVGGLFVAAKG---HDP-QE-----------------------EVKNSERAVQLMGAS  246 (289)
Q Consensus       200 ~~------~~~~~ll~~~~~~LkpgG~l~~~~g---~~~-~~-----------------------ei~~~~~~l~~~g~~  246 (289)
                      .+      .+...+++++.++|+|||++++...   ... ..                       ...++.+.++++||+
T Consensus       256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~  335 (363)
T 3dp7_A          256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE  335 (363)
T ss_dssp             SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence            43      2346889999999999999988642   111 10                       124456677889999


Q ss_pred             EeEEeeeecCCCCCceEEEEEEec
Q 022962          247 LLQLCSVESQSPFGQRTAVVCLKS  270 (289)
Q Consensus       247 ~~~~~~~~~~~~~~~r~lv~~~k~  270 (289)
                      ++++...    ......++..++.
T Consensus       336 ~v~~~~~----~g~~~svi~~~~~  355 (363)
T 3dp7_A          336 VEEIQDN----IGLGHSILQCRLK  355 (363)
T ss_dssp             ESCCCCC----BTTTBEEEEEEEC
T ss_pred             EEEEEeC----CCCCceEEEEeec
Confidence            8877532    2333556666654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.59  E-value=9.1e-16  Score=129.17  Aligned_cols=98  Identities=12%  Similarity=0.067  Sum_probs=81.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +..+|||||||+|.+++.++...|+.+|+|+|+|+.|++++++++..+|.. ++++  .|..+...    +++||+|++.
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~----~~~~DvVLa~  122 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY----KGTYDVVFLL  122 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT----TSEEEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCC----CCCcChhhHh
Confidence            367999999999999999998889999999999999999999999999987 5776  55544322    3789999988


Q ss_pred             C----cccHHHHHHHHccccccCeEEEEE
Q 022962          200 A----VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ~----~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .    +.+.+..+..+.+.|+|||.|+-.
T Consensus       123 k~LHlL~~~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A          123 KMLPVLKQQDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             TCHHHHHHTTCCHHHHHHTCEEEEEEEEE
T ss_pred             hHHHhhhhhHHHHHHHHHHhCCCCEEEEe
Confidence            4    334455566889999999999854

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.59  E-value=1.2e-15  Score=141.87  Aligned_cols=95  Identities=23%  Similarity=0.314  Sum_probs=82.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||||||+|.+++..|++ ...+|+|||.|+ +++.|+++++.+|+.+ |+++++|++++..+    ++||+|+|.-
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp----e~~DvivsE~  157 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP----EQVDAIVSEW  157 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS----SCEEEEECCC
T ss_pred             CCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC----ccccEEEeec
Confidence            789999999999999887765 567999999996 8899999999999864 99999999998653    7899999963


Q ss_pred             c-------ccHHHHHHHHccccccCeEEE
Q 022962          201 V-------AEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       201 ~-------~~~~~ll~~~~~~LkpgG~l~  222 (289)
                      +       ..++.++....++|||||.++
T Consensus       158 ~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          158 MGYGLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             CBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccccccchhhhHHHHHHhhCCCCceEC
Confidence            2       247888888899999999988

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.59  E-value=9.1e-15  Score=131.11  Aligned_cols=130  Identities=14%  Similarity=0.175  Sum_probs=92.3

Q ss_pred             CCCeEEEEcCCCChHHHHH----HHHCCCCEE--EEEeCChHHHHHHHHHHHHc-CCCCEEE--EeccccccCCC---Cc
Q 022962          121 SNLKLVDVGTGAGLPGLVL----AIACPDWKV--TLLESMNKRCVFLEHAVSLT-QLLNVQI--VRGRAETLGKD---VS  188 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~l----a~~~p~~~V--~~iD~s~~~l~~a~~~~~~~-~l~ni~~--~~~d~~~~~~~---~~  188 (289)
                      ++.+|||||||+|.++..+    +..+|+..|  +|+|+|++|++.|++++... ++.++++  ..++++++...   ..
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            3679999999999766533    334567755  99999999999999988764 5666654  56666654310   00


Q ss_pred             CCCCceEEEEcC----cccHHHHHHHHccccccCeEEEEEEcCC-c-H-------------------HHHHHHHHHHHHh
Q 022962          189 FREQYDVAVARA----VAEMRILAEYCLPLVRVGGLFVAAKGHD-P-Q-------------------EEVKNSERAVQLM  243 (289)
Q Consensus       189 ~~~~fD~V~sn~----~~~~~~ll~~~~~~LkpgG~l~~~~g~~-~-~-------------------~ei~~~~~~l~~~  243 (289)
                      .+++||+|+++.    +.++..+++++.++|||||++++..... . .                   ....++.+.++.+
T Consensus       132 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  211 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL  211 (292)
T ss_dssp             CCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHHH
T ss_pred             CCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHHC
Confidence            137899999984    5678999999999999999999854211 0 0                   0123456677889


Q ss_pred             CCeEeEE
Q 022962          244 GASLLQL  250 (289)
Q Consensus       244 g~~~~~~  250 (289)
                      ||.+...
T Consensus       212 Gf~~~~~  218 (292)
T 2aot_A          212 GLKYECY  218 (292)
T ss_dssp             TCCEEEE
T ss_pred             CCceEEE
Confidence            9987653

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.59  E-value=1.6e-14  Score=137.60  Aligned_cols=130  Identities=15%  Similarity=0.146  Sum_probs=99.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..++.+|||+|||+|..++.+|...+ .++|+|+|+|+.+++.+++|++++|+.|+.++++|+.++...  .+++||+|+
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~--~~~~FD~Il  180 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH--FSGFFDRIV  180 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH--HTTCEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh--ccccCCEEE
Confidence            34688999999999999999997654 479999999999999999999999999999999999886421  247899999


Q ss_pred             EcCcc--------------------------cHHHHHHHHccccccCeEEEEEEcCC-cHHHHHHHHHHHHHhCCeEeEE
Q 022962          198 ARAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKGHD-PQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       198 sn~~~--------------------------~~~~ll~~~~~~LkpgG~l~~~~g~~-~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                      +++..                          ....+++.+.++|||||++++..-.. ..+.-..+...++.++|++..+
T Consensus       181 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~l~~~  260 (456)
T 3m4x_A          181 VDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEI  260 (456)
T ss_dssp             EECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEECC
T ss_pred             ECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCEEEec
Confidence            97420                          12378999999999999998755322 2221122334556777766554

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.59  E-value=4.7e-15  Score=125.60  Aligned_cols=100  Identities=16%  Similarity=0.224  Sum_probs=83.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|..++.++.. ++.+|+|+|+|+.+++.+++++...+. +++++++|+.+++..   +++||+|+++.
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~---~~~fD~v~~~~   97 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNF-KLNISKGDIRKLPFK---DESMSFVYSYG   97 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTC-CCCEEECCTTSCCSC---TTCEEEEEECS
T ss_pred             CCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEECchhhCCCC---CCceeEEEEcC
Confidence            3679999999999975555434 467999999999999999999887764 799999999887643   37899999974


Q ss_pred             c------ccHHHHHHHHccccccCeEEEEEE
Q 022962          201 V------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ~------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +      .+...+++++.++|||||.+++..
T Consensus        98 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A           98 TIFHMRKNDVKEAIDEIKRVLKPGGLACINF  128 (209)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            2      467899999999999999999754

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.59  E-value=4.1e-14  Score=130.34  Aligned_cols=146  Identities=15%  Similarity=0.103  Sum_probs=108.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.++.+|||||||+|.++..++..+|+.+++++|+ +.+++.+++++...++. +++++.+|+.+. .    +..||+|+
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~----~~~~D~v~  254 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-L----PRKADAII  254 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-C----SSCEEEEE
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC-C----CCCccEEE
Confidence            34578999999999999999999999999999999 99999999999998875 799999998752 1    13599999


Q ss_pred             EcCcc------cHHHHHHHHccccccCeEEEEEEcC-Cc-----H-H----------------HHHHHHHHHHHhCCeEe
Q 022962          198 ARAVA------EMRILAEYCLPLVRVGGLFVAAKGH-DP-----Q-E----------------EVKNSERAVQLMGASLL  248 (289)
Q Consensus       198 sn~~~------~~~~ll~~~~~~LkpgG~l~~~~g~-~~-----~-~----------------ei~~~~~~l~~~g~~~~  248 (289)
                      ++.+-      ....+++++.++|+|||++++.... ..     . .                ...++.+.++++||+++
T Consensus       255 ~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~  334 (360)
T 1tw3_A          255 LSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVE  334 (360)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEE
T ss_pred             EcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEE
Confidence            87432      2358999999999999999876432 10     0 0                12345667789999998


Q ss_pred             EEeeeecCCCCCceEEEEEEec
Q 022962          249 QLCSVESQSPFGQRTAVVCLKS  270 (289)
Q Consensus       249 ~~~~~~~~~~~~~r~lv~~~k~  270 (289)
                      ++.....+.......++.++|.
T Consensus       335 ~~~~~~~~~~~~~~~~i~~~~~  356 (360)
T 1tw3_A          335 EVRQLPSPTIPYDLSLLVLAPA  356 (360)
T ss_dssp             EEEEEECSSSSCEEEEEEEEEC
T ss_pred             EEEeCCCCcccCccEEEEEEeC
Confidence            8876531100112456666654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.59  E-value=3.9e-15  Score=139.00  Aligned_cols=106  Identities=16%  Similarity=0.105  Sum_probs=87.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHH-------HHcCC--CCEEEEeccccccCCCCc
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAV-------SLTQL--LNVQIVRGRAETLGKDVS  188 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~-------~~~~l--~ni~~~~~d~~~~~~~~~  188 (289)
                      .+.++.+|||||||+|.+++.+|...+..+|+|||+|+.+++.|++++       +.+|+  .+|+++++|+.+++....
T Consensus       170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~  249 (438)
T 3uwp_A          170 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER  249 (438)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccc
Confidence            356789999999999999999998877778999999999999999865       34565  579999999998754211


Q ss_pred             CCCCceEEEEcCc---ccHHHHHHHHccccccCeEEEEE
Q 022962          189 FREQYDVAVARAV---AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       189 ~~~~fD~V~sn~~---~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      + ..||+|++|..   .+....+.++.+.|||||+|++.
T Consensus       250 ~-~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          250 I-ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             H-HTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred             c-CCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEe
Confidence            1 36999999964   46778888999999999999965

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.59  E-value=2.1e-14  Score=125.94  Aligned_cols=131  Identities=13%  Similarity=0.163  Sum_probs=90.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEecccccc-CCCCcC--CCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETL-GKDVSF--REQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~-~~~~~~--~~~fD~V  196 (289)
                      ++.+|||+|||+|.+++.++...++.+|+|+|+|+.+++.|+++++.+++++ ++++++|+.+. ......  +++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            3679999999999999999987778899999999999999999999999875 99999998762 211111  1589999


Q ss_pred             EEcCc----c---------------cHHHHHHHHcccc--------------------ccCeEEEEEEcCCcHHHHHHHH
Q 022962          197 VARAV----A---------------EMRILAEYCLPLV--------------------RVGGLFVAAKGHDPQEEVKNSE  237 (289)
Q Consensus       197 ~sn~~----~---------------~~~~ll~~~~~~L--------------------kpgG~l~~~~g~~~~~ei~~~~  237 (289)
                      ++|..    .               +...++..+.++|                    +++|.+++..+....  +..+.
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~~~~  222 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCS--LAPLK  222 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTS--HHHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhH--HHHHH
Confidence            99821    0               0113344444444                    455555555554333  23344


Q ss_pred             HHHHHhCCeEeEEeee
Q 022962          238 RAVQLMGASLLQLCSV  253 (289)
Q Consensus       238 ~~l~~~g~~~~~~~~~  253 (289)
                      +.+++.||..+++..+
T Consensus       223 ~~l~~~Gf~~v~~~~~  238 (254)
T 2h00_A          223 EELRIQGVPKVTYTEF  238 (254)
T ss_dssp             HHHHHTTCSEEEEEEE
T ss_pred             HHHHHcCCCceEEEEE
Confidence            5667899987777654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.59  E-value=5e-15  Score=132.08  Aligned_cols=107  Identities=15%  Similarity=0.138  Sum_probs=89.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAV  197 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~  197 (289)
                      .++.+|||+|||+|..++.+|...++ .+|+|+|+|+.+++.++++++.+|+.|++++++|+.++.... ...++||+|+
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl  161 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL  161 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence            35789999999999999999987765 899999999999999999999999989999999998764310 0036899999


Q ss_pred             EcCc----------------------ccHHHHHHHHccccccCeEEEEEEc
Q 022962          198 ARAV----------------------AEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       198 sn~~----------------------~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      +++.                      .....+++.+.++|||||++++...
T Consensus       162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence            9831                      2347899999999999999998653

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.59  E-value=4.5e-15  Score=131.27  Aligned_cols=130  Identities=14%  Similarity=-0.007  Sum_probs=98.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChH------HHHHHHHHHHHcCC-CCEEEEecc-c--cccCCCCcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNK------RCVFLEHAVSLTQL-LNVQIVRGR-A--ETLGKDVSF  189 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~------~l~~a~~~~~~~~l-~ni~~~~~d-~--~~~~~~~~~  189 (289)
                      ++.+|||||||+|.++..++... |..+|+|+|+|+.      +++.++++++..++ ++++++++| .  ..++..   
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---  119 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA---  119 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT---
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC---
Confidence            47899999999999999999885 6689999999997      99999999988887 479999998 3  233221   


Q ss_pred             CCCceEEEEcC----cccHHHHHHHHccccccCeEEEEEEcCC------cH--------------------------HHH
Q 022962          190 REQYDVAVARA----VAEMRILAEYCLPLVRVGGLFVAAKGHD------PQ--------------------------EEV  233 (289)
Q Consensus       190 ~~~fD~V~sn~----~~~~~~ll~~~~~~LkpgG~l~~~~g~~------~~--------------------------~ei  233 (289)
                      +++||+|+++.    +.+...+++.+..+++|||++++..-..      ..                          ...
T Consensus       120 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  199 (275)
T 3bkx_A          120 DQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITP  199 (275)
T ss_dssp             TCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCH
T ss_pred             CCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccccccCCH
Confidence            37899999984    3456667777777777899999853110      00                          012


Q ss_pred             HHHHHHHHHhCCeEeEEeee
Q 022962          234 KNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       234 ~~~~~~l~~~g~~~~~~~~~  253 (289)
                      .++.+.++++||+++++..+
T Consensus       200 ~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          200 DTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             HHHHHHHHHHTCEEEECCCB
T ss_pred             HHHHHHHHHCCCeeEEEEEe
Confidence            24556677899998887755

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.58  E-value=8.9e-15  Score=127.70  Aligned_cols=96  Identities=18%  Similarity=0.336  Sum_probs=83.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||+|||+|.+++.++..  +.+|+|+|+|+.+++.|++++...+. +++++++|+.+++.    +++||+|++.. 
T Consensus        42 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~----~~~fD~v~~~~~  114 (252)
T 1wzn_A           42 VRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF----KNEFDAVTMFFS  114 (252)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC----CSCEEEEEECSS
T ss_pred             CCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhccc----CCCccEEEEcCC
Confidence            679999999999999999875  67999999999999999999988876 79999999998754    36899999752 


Q ss_pred             ------cccHHHHHHHHccccccCeEEEEE
Q 022962          201 ------VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       201 ------~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                            ..+...+++.+.++|+|||.+++.
T Consensus       115 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          115 TIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence                  135688999999999999999874

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.58  E-value=1.5e-14  Score=132.91  Aligned_cols=97  Identities=19%  Similarity=0.226  Sum_probs=84.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.+++.+++. +..+|+|+|+|+ +++.|+++++.+++ ++++++++|+++++.+   +++||+|+++
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Ivs~  138 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLP---VEKVDVIISE  138 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS---CSCEEEEEEC
T ss_pred             CCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCC---CCcEEEEEEc
Confidence            3779999999999999998876 556999999997 99999999999998 5799999999987543   2689999998


Q ss_pred             Cc-------ccHHHHHHHHccccccCeEEE
Q 022962          200 AV-------AEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       200 ~~-------~~~~~ll~~~~~~LkpgG~l~  222 (289)
                      .+       ..+..++..+.++|||||.++
T Consensus       139 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          139 WMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            52       356789999999999999997

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.58  E-value=5.3e-14  Score=130.51  Aligned_cols=140  Identities=15%  Similarity=0.114  Sum_probs=106.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .++.+|||||||+|..+..++..+|+.+++++|+ +.+++.+++++...++ ++|+++.+|+.+ +.    +..||+|++
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~----p~~~D~v~~  274 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TI----PDGADVYLI  274 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CC----CSSCSEEEE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CC----CCCceEEEh
Confidence            3478999999999999999999999999999999 9999999999998886 469999999973 22    237999998


Q ss_pred             cCc----cc--HHHHHHHHccccccCeEEEEEEc--CC-c-H----H-------------HHHHHHHHHHHhCCeEeEEe
Q 022962          199 RAV----AE--MRILAEYCLPLVRVGGLFVAAKG--HD-P-Q----E-------------EVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       199 n~~----~~--~~~ll~~~~~~LkpgG~l~~~~g--~~-~-~----~-------------ei~~~~~~l~~~g~~~~~~~  251 (289)
                      +.+    .+  ...+++++.++|+|||++++...  +. . .    .             ...++.+.++++||+++++.
T Consensus       275 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~  354 (369)
T 3gwz_A          275 KHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSL  354 (369)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEE
T ss_pred             hhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEE
Confidence            753    22  34799999999999999998642  11 0 0    0             12345667788999998886


Q ss_pred             eeecCCCCCceEEEEEEe
Q 022962          252 SVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       252 ~~~~~~~~~~r~lv~~~k  269 (289)
                      ..    ..+...++.+++
T Consensus       355 ~~----~~~~~svie~~~  368 (369)
T 3gwz_A          355 PC----GAGPVRIVEIRR  368 (369)
T ss_dssp             EC----SSSSEEEEEEEE
T ss_pred             EC----CCCCcEEEEEEe
Confidence            42    234455555554

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.58  E-value=2e-14  Score=125.03  Aligned_cols=120  Identities=14%  Similarity=0.061  Sum_probs=95.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.+++.++..  ..+|+++|+|+.+++.|+++.+..++ .+++++++|+.+....   +++||+|+++
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~  165 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP---EGIFHAAFVD  165 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC---TTCBSEEEEC
T ss_pred             CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC---CCcccEEEEC
Confidence            4789999999999999999987  78999999999999999999999887 5799999999875411   2679999997


Q ss_pred             CcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeE
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                      .. +...+++.+.++|+|||++++..+..  +.+.++.+.++.. |...+
T Consensus       166 ~~-~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~-f~~~~  211 (248)
T 2yvl_A          166 VR-EPWHYLEKVHKSLMEGAPVGFLLPTA--NQVIKLLESIENY-FGNLE  211 (248)
T ss_dssp             SS-CGGGGHHHHHHHBCTTCEEEEEESSH--HHHHHHHHHSTTT-EEEEE
T ss_pred             Cc-CHHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHhh-CCcce
Confidence            43 45678899999999999999987632  3344444455454 55443

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.57  E-value=4.9e-14  Score=128.59  Aligned_cols=127  Identities=18%  Similarity=0.111  Sum_probs=101.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +..+|||||||+|..+..++..+|+.+++++|+ +.+++.+++++...++ ++|+++.+|+.+ +.    +.+||+|+++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~----p~~~D~v~~~  242 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PL----PAGAGGYVLS  242 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC----CCSCSEEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CC----CCCCcEEEEe
Confidence            467999999999999999999999999999999 9999999999998887 479999999973 22    2379999987


Q ss_pred             Cc----cc--HHHHHHHHccccccCeEEEEEEcCCcH------H-------------HHHHHHHHHHHhCCeEeEEeee
Q 022962          200 AV----AE--MRILAEYCLPLVRVGGLFVAAKGHDPQ------E-------------EVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       200 ~~----~~--~~~ll~~~~~~LkpgG~l~~~~g~~~~------~-------------ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      .+    .+  ...+++++.++|+|||++++.......      .             ...++.+.++++||+.+++...
T Consensus       243 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~  321 (332)
T 3i53_A          243 AVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPI  321 (332)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred             hhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEEC
Confidence            43    22  478999999999999999986532110      0             1234566788999999888643

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.57  E-value=5.3e-14  Score=129.19  Aligned_cols=139  Identities=14%  Similarity=0.097  Sum_probs=107.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||||||+|.++..++..+|+.+++++|+ +.+++.+++++...++. +++++.+|+.+....  .++.||+|+++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~D~v~~~~  256 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF--EGGAADVVMLND  256 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG--TTCCEEEEEEES
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc--CCCCccEEEEec
Confidence            67999999999999999999999999999999 88999999999988875 599999999876410  236799999974


Q ss_pred             c----c--cHHHHHHHHccccccCeEEEEEEcC------Cc-HH-----------------HHHHHHHHHHHhCCeEeEE
Q 022962          201 V----A--EMRILAEYCLPLVRVGGLFVAAKGH------DP-QE-----------------EVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       201 ~----~--~~~~ll~~~~~~LkpgG~l~~~~g~------~~-~~-----------------ei~~~~~~l~~~g~~~~~~  250 (289)
                      +    .  +...+++++.++|+|||++++....      .. ..                 ...++.+.+++.||++++.
T Consensus       257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~  336 (352)
T 3mcz_A          257 CLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER  336 (352)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             ccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence            3    2  3478999999999999999986421      01 00                 1234566788999998874


Q ss_pred             eeeecCCCCCceEEEEEEec
Q 022962          251 CSVESQSPFGQRTAVVCLKS  270 (289)
Q Consensus       251 ~~~~~~~~~~~r~lv~~~k~  270 (289)
                      .       .+...+++.+|.
T Consensus       337 ~-------~g~~~l~~a~kp  349 (352)
T 3mcz_A          337 S-------IGRYTLLIGQRS  349 (352)
T ss_dssp             E-------ETTEEEEEEECC
T ss_pred             c-------cCceEEEEEecC
Confidence            2       244566666653

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.57  E-value=1.8e-14  Score=132.81  Aligned_cols=98  Identities=19%  Similarity=0.256  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.+++.+++. +..+|+|+|+|+ +++.|+++++.+++ ++++++++|+++++.    +++||+|+++
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~----~~~~D~Ivs~  123 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL----PEQVDIIISE  123 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC----SSCEEEEEEC
T ss_pred             CcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC----CCceeEEEEe
Confidence            3779999999999999998875 567999999996 88999999999988 579999999998754    2689999998


Q ss_pred             Cc------ccHHHHHHHHccccccCeEEEEE
Q 022962          200 AV------AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ~~------~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .+      ......+..+.++|||||.+++.
T Consensus       124 ~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          124 PMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             CchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            53      34567788899999999999854

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.57  E-value=1.1e-14  Score=126.80  Aligned_cols=100  Identities=14%  Similarity=0.105  Sum_probs=81.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC--CCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF--REQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~--~~~fD~V~s  198 (289)
                      ++.+|||||||+|.++..++...+  +|+|+|+|+.+++.++++.   ...+++++++|+.++.....+  ...||+|++
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~  130 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDANIYM  130 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCccEEEE
Confidence            478999999999999999998865  8999999999999998865   334799999999886432111  134999999


Q ss_pred             cC----cc--cHHHHHHHHccccccCeEEEEEE
Q 022962          199 RA----VA--EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       199 n~----~~--~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +.    +.  +...+++++.++|||||++++..
T Consensus       131 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             ESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             cchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            84    23  67899999999999999977654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.57  E-value=4.9e-14  Score=119.51  Aligned_cols=122  Identities=11%  Similarity=0.087  Sum_probs=92.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.++++++.+++ +++++++|+.+++      ++||+|++|.
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~------~~~D~v~~~~  120 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN------SRVDIVIMNP  120 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC------CCCSEEEECC
T ss_pred             CcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC------CCCCEEEEcC
Confidence            3779999999999999999876 345899999999999999999998888 8999999998863      4799999995


Q ss_pred             c------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962          201 V------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  254 (289)
Q Consensus       201 ~------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~  254 (289)
                      .      .....+++.+.+.+  ||.+++...  .......+.+.+...|+.+..+....
T Consensus       121 p~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~  176 (207)
T 1wy7_A          121 PFGSQRKHADRPFLLKAFEIS--DVVYSIHLA--KPEVRRFIEKFSWEHGFVVTHRLTTK  176 (207)
T ss_dssp             CCSSSSTTTTHHHHHHHHHHC--SEEEEEEEC--CHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCccccCCchHHHHHHHHHhc--CcEEEEEeC--CcCCHHHHHHHHHHCCCeEEEEEEEe
Confidence            3      23457788888887  555443321  22333444556778998877665543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.57  E-value=3.6e-14  Score=132.01  Aligned_cols=142  Identities=12%  Similarity=0.084  Sum_probs=106.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..++.+|||+|||+|.+++.+|...+..+|+|+|+|+.+++.|++|++.+|+ ++++++++|+.+++..   +++||+|+
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~---~~~fD~Ii  291 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY---VDSVDFAI  291 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT---CSCEEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc---cCCcCEEE
Confidence            3567899999999999999999876656999999999999999999999998 5799999999998643   36899999


Q ss_pred             EcCc-----------cc-HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEE
Q 022962          198 ARAV-----------AE-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAV  265 (289)
Q Consensus       198 sn~~-----------~~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv  265 (289)
                      +|..           .. +..+++.+.++|  ||.+++....  .+.+.   +.+...||+..+...+.    .|.-..-
T Consensus       292 ~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~--~~~~~---~~~~~~G~~~~~~~~~~----nG~l~~~  360 (373)
T 3tm4_A          292 SNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE--KKAIE---EAIAENGFEIIHHRVIG----HGGLMVH  360 (373)
T ss_dssp             EECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC--HHHHH---HHHHHTTEEEEEEEEEE----ETTEEEE
T ss_pred             ECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC--HHHHH---HHHHHcCCEEEEEEEEE----cCCEEEE
Confidence            9842           11 377888888888  5666655542  23333   35568899988876553    2333444


Q ss_pred             EEEecCCCC
Q 022962          266 VCLKSRRTP  274 (289)
Q Consensus       266 ~~~k~~~~p  274 (289)
                      ++....++|
T Consensus       361 ~~~~~~~~~  369 (373)
T 3tm4_A          361 LYVVKLEHH  369 (373)
T ss_dssp             EEEEEETTC
T ss_pred             EEeccCccC
Confidence            444444554

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.57  E-value=9.1e-15  Score=123.94  Aligned_cols=101  Identities=11%  Similarity=0.142  Sum_probs=84.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.++..++...+. +|+|+|+|+.+++.++++...  ..+++++++|+.+++..   +++||+|+++.
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~---~~~fD~v~~~~  115 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFP---SASFDVVLEKG  115 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSC---SSCEEEEEEES
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCC---CCcccEEEECc
Confidence            4779999999999999999876433 999999999999999997664  34799999999887543   36899999874


Q ss_pred             c-------------------ccHHHHHHHHccccccCeEEEEEEcC
Q 022962          201 V-------------------AEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       201 ~-------------------~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      .                   .+...+++++.++|+|||.+++....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          116 TLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             HHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             chhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            2                   24589999999999999999987643

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.57  E-value=3.2e-15  Score=139.31  Aligned_cols=97  Identities=22%  Similarity=0.274  Sum_probs=84.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.+++.+++. +..+|+|+|+| .+++.|+++++.+++.+ ++++++|++++..+    ++||+|+++
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~Iv~~  136 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP----EKVDVIISE  136 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS----SCEEEEEEC
T ss_pred             CCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC----CcceEEEEc
Confidence            4789999999999999999876 44599999999 99999999999999865 99999999988643    789999997


Q ss_pred             Cc-------ccHHHHHHHHccccccCeEEEE
Q 022962          200 AV-------AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       200 ~~-------~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      .+       ..+..+++.+.++|||||.+++
T Consensus       137 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~  167 (376)
T 3r0q_C          137 WMGYFLLRESMFDSVISARDRWLKPTGVMYP  167 (376)
T ss_dssp             CCBTTBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred             ChhhcccchHHHHHHHHHHHhhCCCCeEEEE
Confidence            42       3478899999999999999985

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.57  E-value=3.2e-14  Score=129.52  Aligned_cols=146  Identities=11%  Similarity=0.064  Sum_probs=104.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc--CC--CCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QL--LNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~--~l--~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.+|||||||+|..+..+++..+..+|+++|+|+.+++.|+++....  ++  .+++++++|+.+....  .+++||+|+
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~Ii  186 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN--HKNEFDVII  186 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH--CTTCEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh--cCCCceEEE
Confidence            57999999999999999987667789999999999999999987653  22  4799999999874211  136899999


Q ss_pred             EcCccc-------H-HHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCC-CceEEEE
Q 022962          198 ARAVAE-------M-RILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPF-GQRTAVV  266 (289)
Q Consensus       198 sn~~~~-------~-~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~-~~r~lv~  266 (289)
                      ++....       + ..+++.+.++|+|||.+++..+.  ...+.+..+.+.++.. |..++......|.-. +.+..++
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~v-F~~v~~~~~~iP~~~~g~~g~~~  265 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYAQSIVSTYPSGSMGYLI  265 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEEEEECTTSGGGEEEEEE
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHH-CCcceEEEEEecCcCCCceEEEE
Confidence            986321       1 68899999999999999987643  2345566666666665 444444444345433 3445666


Q ss_pred             EEec
Q 022962          267 CLKS  270 (289)
Q Consensus       267 ~~k~  270 (289)
                      +.|.
T Consensus       266 ask~  269 (314)
T 2b2c_A          266 CAKN  269 (314)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            6654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.56  E-value=1.6e-14  Score=123.26  Aligned_cols=104  Identities=20%  Similarity=0.224  Sum_probs=85.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .++.+|||||||+|.++..++... +..+|+++|+|+.+++.++++....++++++++++|+.....   ..++||+|++
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v~~  152 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE---PLAPYDRIYT  152 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG---GGCCEEEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC---CCCCeeEEEE
Confidence            357899999999999999999876 558999999999999999999999888889999999865322   1368999999


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEEEcCC
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAAKGHD  228 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~~g~~  228 (289)
                      +....  .+.+.+.++|+|||++++..+..
T Consensus       153 ~~~~~--~~~~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          153 TAAGP--KIPEPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             SSBBS--SCCHHHHHTEEEEEEEEEEESSS
T ss_pred             CCchH--HHHHHHHHHcCCCcEEEEEECCC
Confidence            85432  12257788999999999987653

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.56  E-value=1.6e-14  Score=134.87  Aligned_cols=101  Identities=18%  Similarity=0.267  Sum_probs=88.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.+++.++..  +.+|+|+|+|+.+++.|+++++.++++ ++++++|+.+....   +++||+|++|.
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~~~---~~~fD~Ii~np  306 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEALTE---EARFDIIVTNP  306 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTSCT---TCCEEEEEECC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhcccc---CCCeEEEEECC
Confidence            4779999999999999999976  579999999999999999999999874 99999999887543   36899999983


Q ss_pred             ---------cccHHHHHHHHccccccCeEEEEEEcC
Q 022962          201 ---------VAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       201 ---------~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                               ......+++++.++|+|||.+++....
T Consensus       307 p~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~  342 (381)
T 3dmg_A          307 PFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP  342 (381)
T ss_dssp             CCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             chhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence                     235678999999999999999997654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.56  E-value=1e-14  Score=125.57  Aligned_cols=102  Identities=21%  Similarity=0.266  Sum_probs=85.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-----CCCEEEEEeCChHHHHHHHHHHHHcC-----CCCEEEEeccccccC----CC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-----PDWKVTLLESMNKRCVFLEHAVSLTQ-----LLNVQIVRGRAETLG----KD  186 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-----p~~~V~~iD~s~~~l~~a~~~~~~~~-----l~ni~~~~~d~~~~~----~~  186 (289)
                      ++.+|||||||+|..+..++...     |..+|+++|+++.+++.|+++.+..+     ..+++++++|+.+..    ..
T Consensus        80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  159 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE  159 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence            47899999999999999999875     46799999999999999999999887     568999999998743    21


Q ss_pred             CcCCCCceEEEEcCcccHHHHHHHHccccccCeEEEEEEcC
Q 022962          187 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       187 ~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                         .++||+|+++....  .+++.+.++|+|||++++..+.
T Consensus       160 ---~~~fD~I~~~~~~~--~~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          160 ---LGLFDAIHVGASAS--ELPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             ---HCCEEEEEECSBBS--SCCHHHHHHEEEEEEEEEEEEE
T ss_pred             ---CCCcCEEEECCchH--HHHHHHHHhcCCCcEEEEEEcc
Confidence               36899999986543  3567788899999999988764

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.56  E-value=1.9e-14  Score=128.80  Aligned_cols=163  Identities=13%  Similarity=0.035  Sum_probs=98.8

Q ss_pred             cCcCceeecChHHHHHhhhhhccccCCCCcccccc--cc--CCCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeC-
Q 022962           79 RKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HC--DSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLES-  153 (289)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~--~~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~-  153 (289)
                      .+.++.++.+..++|+..+..         .++.+  ..  .....++.+|||||||+|.+++.++.. +..+|+|+|+ 
T Consensus        42 ~~~~~~~i~g~~~~~g~~~~~---------~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s  111 (281)
T 3bzb_A           42 QCSVQVQTTQEHPLWTSHVWS---------GARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYP  111 (281)
T ss_dssp             CCEEEEECC-----------C---------HHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECS
T ss_pred             cCCeEEEECCCCCCCCceeec---------HHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCC
Confidence            344777888877777643321         11100  00  001124779999999999999998875 4459999999 


Q ss_pred             ChHHHHHHHHHH-----HHcCCC-----CEEEEeccccccCCCCc---CCCCceEEEEcC----cccHHHHHHHHccccc
Q 022962          154 MNKRCVFLEHAV-----SLTQLL-----NVQIVRGRAETLGKDVS---FREQYDVAVARA----VAEMRILAEYCLPLVR  216 (289)
Q Consensus       154 s~~~l~~a~~~~-----~~~~l~-----ni~~~~~d~~~~~~~~~---~~~~fD~V~sn~----~~~~~~ll~~~~~~Lk  216 (289)
                      |+.+++.|++|+     +.+++.     +++++..++.+......   .+++||+|++..    ......+++.+.++|+
T Consensus       112 ~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk  191 (281)
T 3bzb_A          112 DPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLA  191 (281)
T ss_dssp             CHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBC
T ss_pred             CHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhc
Confidence            899999999999     556654     68888666544211000   136899999853    4467899999999999


Q ss_pred             ---c--CeEEEEEEcCCc---HHHHHHHHHHHHHhC-CeEeEEe
Q 022962          217 ---V--GGLFVAAKGHDP---QEEVKNSERAVQLMG-ASLLQLC  251 (289)
Q Consensus       217 ---p--gG~l~~~~g~~~---~~ei~~~~~~l~~~g-~~~~~~~  251 (289)
                         |  ||.+++......   ......+.+.+++.| |.+..+.
T Consensus       192 ~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~  235 (281)
T 3bzb_A          192 LPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWL  235 (281)
T ss_dssp             CTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEEE
T ss_pred             ccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEec
Confidence               9  999876544322   122344556677899 9887763

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.56  E-value=4.8e-14  Score=126.43  Aligned_cols=146  Identities=13%  Similarity=0.049  Sum_probs=106.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC----CCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~----l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.+|||||||+|..+..+++..+..+|+++|+|+.+++.|+++...++    ..+++++++|+.+....  .+++||+|+
T Consensus        79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD~Ii  156 (283)
T 2i7c_A           79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN--VTNTYDVII  156 (283)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH--CCSCEEEEE
T ss_pred             CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh--CCCCceEEE
Confidence            579999999999999999876667899999999999999999876542    35799999999875321  136899999


Q ss_pred             EcCcc------cH--HHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCc-eEEEE
Q 022962          198 ARAVA------EM--RILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAVV  266 (289)
Q Consensus       198 sn~~~------~~--~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~-r~lv~  266 (289)
                      ++...      .+  ..+++.+.++|+|||.+++..+.  ...+.+..+.+.++.. |..++......|.-.++ ...++
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~vP~y~~g~~g~~~  235 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEYANISIPTYPCGCIGILC  235 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEEEECTTSGGGEEEEEE
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH-CCceEEEEEEcCCcCCCcEEEEE
Confidence            97522      22  78999999999999999986542  3445556666666654 55555544444543334 44555


Q ss_pred             EEec
Q 022962          267 CLKS  270 (289)
Q Consensus       267 ~~k~  270 (289)
                      +.+.
T Consensus       236 ~s~~  239 (283)
T 2i7c_A          236 CSKT  239 (283)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            5544

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.56  E-value=9e-15  Score=127.11  Aligned_cols=103  Identities=17%  Similarity=0.253  Sum_probs=87.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcC-C--CCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSF-R--EQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~-~--~~fD~V  196 (289)
                      +.+|||||||+|..++.+|...+ +.+|+++|+|+.+++.|+++++..++. +++++++|+.+....... +  ++||+|
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V  152 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI  152 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence            67999999999999999998876 689999999999999999999998885 599999998653111001 1  679999


Q ss_pred             EEcCc-ccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAV-AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~-~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ++++. .++..+++.+.++|+|||.+++.
T Consensus       153 ~~d~~~~~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          153 FIDADKRNYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             EECSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EECCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            99864 57889999999999999999874

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.56  E-value=5.7e-14  Score=118.42  Aligned_cols=94  Identities=14%  Similarity=0.224  Sum_probs=72.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC--CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC------------
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP--DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD------------  186 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p--~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~------------  186 (289)
                      ++.+|||||||+|.++..++...+  ..+|+|+|+|+.+           ...+++++++|+.+....            
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~   90 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN   90 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC----------
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhcccccccccc
Confidence            467999999999999999998887  6899999999831           245799999999876400            


Q ss_pred             ----------CcCCCCceEEEEcCcc--------cH-------HHHHHHHccccccCeEEEEEE
Q 022962          187 ----------VSFREQYDVAVARAVA--------EM-------RILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       187 ----------~~~~~~fD~V~sn~~~--------~~-------~~ll~~~~~~LkpgG~l~~~~  225 (289)
                                ...+++||+|+++...        +.       ..+++.+.++|||||.|++..
T Consensus        91 ~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A           91 NNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             -CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence                      0013689999998421        11       247889999999999999854

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.56  E-value=1.3e-14  Score=126.67  Aligned_cols=103  Identities=19%  Similarity=0.230  Sum_probs=87.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCC--c--CCCCceE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV--S--FREQYDV  195 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~--~--~~~~fD~  195 (289)
                      +.+|||||||+|..++.+|...| +.+|+++|+|+.+++.|+++++..|+. +++++++|+.+.....  .  ..++||+
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~  150 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF  150 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence            67999999999999999999876 789999999999999999999999986 5999999997642110  0  0368999


Q ss_pred             EEEcC-cccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARA-VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~-~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |++.+ ...+..+++.+.++|+|||.+++.
T Consensus       151 I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          151 GFVDADKPNYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             EEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence            99986 446789999999999999999874

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.56  E-value=3.3e-14  Score=129.16  Aligned_cols=121  Identities=19%  Similarity=0.183  Sum_probs=93.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcc
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA  202 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~  202 (289)
                      .+|||||||+|.++..+++.+|+.+|++||+|+.+++.|+++.......+++++++|+.++... ..+++||+|+++...
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~-~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAES-FTPASRDVIIRDVFA  169 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHT-CCTTCEEEEEECCST
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhh-ccCCCCCEEEECCCC
Confidence            4899999999999999998889999999999999999999976544345799999999876321 113689999997422


Q ss_pred             ------c--HHHHHHHHccccccCeEEEEEEcCC-cHHHHHHHHHHHHHhC
Q 022962          203 ------E--MRILAEYCLPLVRVGGLFVAAKGHD-PQEEVKNSERAVQLMG  244 (289)
Q Consensus       203 ------~--~~~ll~~~~~~LkpgG~l~~~~g~~-~~~ei~~~~~~l~~~g  244 (289)
                            .  ...+++.+.++|+|||.|++..+.. ....+..+.+.++...
T Consensus       170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF  220 (317)
T 3gjy_A          170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVF  220 (317)
T ss_dssp             TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHC
T ss_pred             ccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHC
Confidence                  1  2789999999999999999876532 2234455556666653

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.56  E-value=1e-14  Score=127.03  Aligned_cols=104  Identities=21%  Similarity=0.242  Sum_probs=87.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCC-----------c
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDV-----------S  188 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~-----------~  188 (289)
                      +.+|||||||+|..++.++...+ +.+|+++|+++.+++.|+++++..++.+ ++++++|+.+.....           .
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  140 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD  140 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence            67999999999999999999876 6899999999999999999999988865 999999987631100           0


Q ss_pred             C--C-CCceEEEEcC-cccHHHHHHHHccccccCeEEEEEE
Q 022962          189 F--R-EQYDVAVARA-VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       189 ~--~-~~fD~V~sn~-~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +  + ++||+|+++. ...+..+++.+.++|+|||++++..
T Consensus       141 f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          141 FAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             TCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            1  1 5799999985 4567899999999999999999854

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.55  E-value=8.6e-15  Score=126.12  Aligned_cols=103  Identities=25%  Similarity=0.275  Sum_probs=87.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCC---CCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFR---EQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~---~~fD~V  196 (289)
                      +.+|||||||+|..++.++...+ +.+|+++|+|+.+++.|+++++..++ ++++++++|+.+........   ++||+|
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v  149 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  149 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence            67999999999999999998766 78999999999999999999999988 47999999987642110001   579999


Q ss_pred             EEcC-cccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARA-VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~-~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ++++ ...+..+++.+.++|+|||.+++.
T Consensus       150 ~~d~~~~~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          150 VVDADKENCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             EECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            9986 456789999999999999999874

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.55  E-value=1.1e-13  Score=131.18  Aligned_cols=144  Identities=13%  Similarity=0.069  Sum_probs=105.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-CcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-~~~~~~fD~V~s  198 (289)
                      .++.+|||+|||+|.+++.+|..  ..+|+|+|+|+.+++.|++|++.++++|++++++|+.+.... ...+++||+|++
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~  362 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL  362 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEE
Confidence            45789999999999999999976  679999999999999999999999998999999999874221 011357999999


Q ss_pred             cCc-ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEEEEe
Q 022962          199 RAV-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVVCLK  269 (289)
Q Consensus       199 n~~-~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~~~k  269 (289)
                      |.. .....+++.+.. ++|++.+++...+   ..+..-...+.+.|+.+.++..++ +|....-..+++++|
T Consensus       363 dPPr~g~~~~~~~l~~-~~p~~ivyvsc~p---~tlard~~~l~~~Gy~~~~~~~~d~Fp~t~HvE~v~ll~r  431 (433)
T 1uwv_A          363 DPARAGAAGVMQQIIK-LEPIRIVYVSCNP---ATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR  431 (433)
T ss_dssp             CCCTTCCHHHHHHHHH-HCCSEEEEEESCH---HHHHHHHHHHHHTTCEEEEEEEECCSTTSSCCEEEEEEEC
T ss_pred             CCCCccHHHHHHHHHh-cCCCeEEEEECCh---HHHHhhHHHHHHCCcEEEEEEEeccCCCCCeEEEEEEEEE
Confidence            952 223355555443 7889888775432   222222345667899999988776 454444555666654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.55  E-value=9.9e-16  Score=133.17  Aligned_cols=96  Identities=11%  Similarity=0.065  Sum_probs=82.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||+|||+|.+++.++..  +.+|+|+|+|+.+++.|+++++.+++ .+++++++|+.++..    +++||+|+++.
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~~~  152 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS----FLKADVVFLSP  152 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG----GCCCSEEEECC
T ss_pred             CCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc----cCCCCEEEECC
Confidence            789999999999999999976  48999999999999999999999998 589999999998763    37899999985


Q ss_pred             c----ccHHHHHHHHccccccCeEEEE
Q 022962          201 V----AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       201 ~----~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      .    ......+.++.++|+|||.+++
T Consensus       153 ~~~~~~~~~~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          153 PWGGPDYATAETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             CCSSGGGGGSSSBCTTTSCSSCHHHHH
T ss_pred             CcCCcchhhhHHHHHHhhcCCcceeHH
Confidence            2    3334466678899999999764

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.55  E-value=4.3e-14  Score=132.11  Aligned_cols=108  Identities=13%  Similarity=0.100  Sum_probs=88.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCC-cCCCCceEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDV-SFREQYDVA  196 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~-~~~~~fD~V  196 (289)
                      .++.+|||+|||+|.+++.+|.. ...+|+|+|+|+.+++.|++|++.++++  +++++++|+.++.... ...++||+|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I  289 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  289 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence            45789999999999999999964 3459999999999999999999999987  8999999998742110 012589999


Q ss_pred             EEcCc-------------ccHHHHHHHHccccccCeEEEEEEcCC
Q 022962          197 VARAV-------------AEMRILAEYCLPLVRVGGLFVAAKGHD  228 (289)
Q Consensus       197 ~sn~~-------------~~~~~ll~~~~~~LkpgG~l~~~~g~~  228 (289)
                      +++..             ..+..+++.+.++|+|||.+++.....
T Consensus       290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            99731             245678889999999999999887543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.55  E-value=1.5e-14  Score=131.05  Aligned_cols=104  Identities=6%  Similarity=-0.023  Sum_probs=79.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC------CEEEEeccc------cccCCCCc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL------NVQIVRGRA------ETLGKDVS  188 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~------ni~~~~~d~------~~~~~~~~  188 (289)
                      ++.+|||||||+|.....++.. ...+|+|+|+|+.|++.|++.+...+..      ++++.+.|+      +++... .
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~-~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREV-F  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTT-C
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcc-c
Confidence            3789999999999766555543 4579999999999999999988776643      267888887      333211 1


Q ss_pred             CCCCceEEEEcCc-------ccHHHHHHHHccccccCeEEEEEEc
Q 022962          189 FREQYDVAVARAV-------AEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       189 ~~~~fD~V~sn~~-------~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      .+++||+|+|...       .+...+++++.++|||||+|++...
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            1368999998631       3568999999999999999987653

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.55  E-value=6.9e-14  Score=128.34  Aligned_cols=148  Identities=11%  Similarity=0.084  Sum_probs=104.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc--CC--CCEEEEeccccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QL--LNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~--~l--~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ++.+|||||||+|.++..+++..+..+|++||+|+.+++.|+++...+  ++  .+++++++|+.++... ..+++||+|
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~-~~~~~fDlI  198 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN-AAEGSYDAV  198 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT-SCTTCEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHh-ccCCCccEE
Confidence            467999999999999999998767789999999999999999987653  33  4799999999875211 013689999


Q ss_pred             EEcCcc-----c---HHHHHHHHccccccCeEEEEEEc--CCcHHHHHHHHHHHHHhCCe-EeEEeeeecCCCC-CceEE
Q 022962          197 VARAVA-----E---MRILAEYCLPLVRVGGLFVAAKG--HDPQEEVKNSERAVQLMGAS-LLQLCSVESQSPF-GQRTA  264 (289)
Q Consensus       197 ~sn~~~-----~---~~~ll~~~~~~LkpgG~l~~~~g--~~~~~ei~~~~~~l~~~g~~-~~~~~~~~~~~~~-~~r~l  264 (289)
                      +++...     .   ...+++.+.++|+|||.+++..+  ......+..+.+.++.. |. +........|.-. +....
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~~~~~~~~~vP~y~~g~~gf  277 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREI-FKGSVNYAWTSVPTYPSGVIGF  277 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSSCEEEEEEECTTSGGGEEEE
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHh-CccccceEEEeCCcccCCceEE
Confidence            998531     1   47899999999999999998533  23344455555555543 33 2322212223322 45556


Q ss_pred             EEEEec
Q 022962          265 VVCLKS  270 (289)
Q Consensus       265 v~~~k~  270 (289)
                      +++.+.
T Consensus       278 ~~as~~  283 (334)
T 1xj5_A          278 MLCSTE  283 (334)
T ss_dssp             EEEECS
T ss_pred             EEcccC
Confidence            666654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.55  E-value=2e-14  Score=123.69  Aligned_cols=102  Identities=21%  Similarity=0.230  Sum_probs=84.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcC-----CCCEEEEeccccccCCCCcCCCCce
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQ-----LLNVQIVRGRAETLGKDVSFREQYD  194 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~-----l~ni~~~~~d~~~~~~~~~~~~~fD  194 (289)
                      ++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++++...+     .++++++++|+.+....   .++||
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD  153 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE---EAPYD  153 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG---GCCEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc---CCCcC
Confidence            47899999999999999999774 55799999999999999999998865     45899999999765332   36899


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEEEcC
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      +|+++...  ..+++.+.++|||||++++..+.
T Consensus       154 ~i~~~~~~--~~~~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          154 AIHVGAAA--PVVPQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEEECSBB--SSCCHHHHHTEEEEEEEEEEESC
T ss_pred             EEEECCch--HHHHHHHHHhcCCCcEEEEEEec
Confidence            99998643  23456788999999999998764

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.54  E-value=5.2e-14  Score=120.32  Aligned_cols=124  Identities=17%  Similarity=0.193  Sum_probs=94.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.++..++.. + .+|+|+|+|+.+++.++++.       .+++++|+.+...+ ..+++||+|+++.
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~-~~~~~fD~v~~~~  101 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMP-YEEEQFDCVIFGD  101 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCC-SCTTCEEEEEEES
T ss_pred             CCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCC-CCCCccCEEEECC
Confidence            3779999999999999999876 4 89999999999998887642       36788998864321 1136899999974


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEcCCc---------------------------HHHHHHHHHHHHHhCCeEeE
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKGHDP---------------------------QEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g~~~---------------------------~~ei~~~~~~l~~~g~~~~~  249 (289)
                          +.+...+++++.++|+|||.+++......                           .-...++.+.++.+||++++
T Consensus       102 ~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  181 (230)
T 3cc8_A          102 VLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISK  181 (230)
T ss_dssp             CGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEE
T ss_pred             hhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEE
Confidence                34678999999999999999998643210                           01234456677799999988


Q ss_pred             Eeeee
Q 022962          250 LCSVE  254 (289)
Q Consensus       250 ~~~~~  254 (289)
                      +..+.
T Consensus       182 ~~~~~  186 (230)
T 3cc8_A          182 VDRVY  186 (230)
T ss_dssp             EEEEE
T ss_pred             EEecc
Confidence            87664

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.54  E-value=1.9e-14  Score=130.84  Aligned_cols=102  Identities=19%  Similarity=0.247  Sum_probs=85.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.+++.++...+ ..+|+|+|+|+.+++.|+++++..++++++++++|+.+....   .++||+|+++
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~---~~~fD~Iv~~  151 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE---FSPYDVIFVT  151 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---GCCEEEEEEC
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc---CCCeEEEEEc
Confidence            478999999999999999998766 478999999999999999999999998899999999875432   3689999998


Q ss_pred             CcccHHHHHHHHccccccCeEEEEEEcC
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      ....  .+.+.+.++|||||++++..+.
T Consensus       152 ~~~~--~~~~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          152 VGVD--EVPETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             SBBS--CCCHHHHHHEEEEEEEEEEBCB
T ss_pred             CCHH--HHHHHHHHhcCCCcEEEEEECC
Confidence            6432  1125677899999999987643

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.54  E-value=9.1e-14  Score=125.95  Aligned_cols=146  Identities=12%  Similarity=0.052  Sum_probs=103.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH--cC--CCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL--TQ--LLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~--~~--l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.+|||||||+|..+..+++..+..+|++||+|+.+++.|+++...  .+  ..+++++++|+.++...  .+++||+|+
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~--~~~~fD~Ii  173 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ--NQDAFDVII  173 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT--CSSCEEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh--CCCCceEEE
Confidence            6799999999999999998776778999999999999999998765  23  24799999999774211  136899999


Q ss_pred             EcCccc--------HHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCC-CceEEEE
Q 022962          198 ARAVAE--------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPF-GQRTAVV  266 (289)
Q Consensus       198 sn~~~~--------~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~-~~r~lv~  266 (289)
                      ++....        ...+++.+.++|+|||.+++..+.  .....+..+.+.++.. |..++......|.-. +....++
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~~~~~~vP~~~~g~~g~~~  252 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVAYAYCTIPTYPSGQIGFML  252 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEEEEEEECTTSGGGEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHh-CCCceeEEEEeccccCcceEEEE
Confidence            985431        357899999999999999987633  2334445555555554 444444433334322 4455666


Q ss_pred             EEec
Q 022962          267 CLKS  270 (289)
Q Consensus       267 ~~k~  270 (289)
                      +.+.
T Consensus       253 as~~  256 (304)
T 2o07_A          253 CSKN  256 (304)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            6654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.54  E-value=1.5e-14  Score=132.91  Aligned_cols=101  Identities=15%  Similarity=0.218  Sum_probs=87.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      .+.+|||+|||+|.+++.++...|..+|+++|+|+.+++.+++++..+++. ++++.+|+.+..     +++||+|++|.
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~-----~~~fD~Iv~~~  269 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV-----KGRFDMIISNP  269 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC-----CSCEEEEEECC
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc-----cCCeeEEEECC
Confidence            367999999999999999999988889999999999999999999998874 778888887643     36899999984


Q ss_pred             c---------ccHHHHHHHHccccccCeEEEEEEcC
Q 022962          201 V---------AEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       201 ~---------~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      .         .....+++++.++|||||.+++....
T Consensus       270 ~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          270 PFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             CCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             CcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            2         24688999999999999999987643

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.54  E-value=6.1e-14  Score=127.90  Aligned_cols=136  Identities=15%  Similarity=0.124  Sum_probs=104.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      .+|||||||+|..+..++..+|+.+++++|+ +.+++.+++++...++ ++++++.+|+.+ +.    +++||+|+++.+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~----~~~~D~v~~~~v  242 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV----PSNGDIYLLSRI  242 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC----CSSCSEEEEESC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC----CCCCCEEEEchh
Confidence            7999999999999999999999999999999 9999999998877665 469999999976 32    257999998753


Q ss_pred             c------cHHHHHHHHccccccCeEEEEEEcC-----CcH-H----------------HHHHHHHHHHHhCCeEeEEeee
Q 022962          202 A------EMRILAEYCLPLVRVGGLFVAAKGH-----DPQ-E----------------EVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       202 ~------~~~~ll~~~~~~LkpgG~l~~~~g~-----~~~-~----------------ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      -      ....+++.+.++|+|||++++....     ... .                ...++.+.++++||+.+++...
T Consensus       243 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~  322 (334)
T 2ip2_A          243 IGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDL  322 (334)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEEC
Confidence            2      2348999999999999999987421     100 0                1234566778999998887643


Q ss_pred             ecCCCCCceEEEEEEe
Q 022962          254 ESQSPFGQRTAVVCLK  269 (289)
Q Consensus       254 ~~~~~~~~r~lv~~~k  269 (289)
                           .+...++.++|
T Consensus       323 -----~~~~~~i~~~~  333 (334)
T 2ip2_A          323 -----PMETRMIVAAR  333 (334)
T ss_dssp             -----TTTEEEEEEEE
T ss_pred             -----CCCCEEEEEEe
Confidence                 13345555554

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.54  E-value=6.7e-14  Score=114.32  Aligned_cols=132  Identities=13%  Similarity=0.173  Sum_probs=90.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC--------CCCcCCC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG--------KDVSFRE  191 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~--------~~~~~~~  191 (289)
                      ++.+|||+|||+|.++..++..+ ++.+|+|+|+|+ +++          ..+++++++|+.+.+        ..   ++
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~~~~~~~~~~~~---~~   87 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----------IVGVDFLQGDFRDELVMKALLERVG---DS   87 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----------CTTEEEEESCTTSHHHHHHHHHHHT---TC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----------cCcEEEEEcccccchhhhhhhccCC---CC
Confidence            47799999999999999999884 668999999999 643          257999999998764        22   36


Q ss_pred             CceEEEEcCcc----cH-----------HHHHHHHccccccCeEEEEEEc-CCcHHHHHHHHHHHHHhCCeEeEEeeeec
Q 022962          192 QYDVAVARAVA----EM-----------RILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASLLQLCSVES  255 (289)
Q Consensus       192 ~fD~V~sn~~~----~~-----------~~ll~~~~~~LkpgG~l~~~~g-~~~~~ei~~~~~~l~~~g~~~~~~~~~~~  255 (289)
                      +||+|+++...    ..           ..+++.+.++|+|||.+++... .....++   .+.+... |..+++..-..
T Consensus        88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~  163 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEY---LREIRSL-FTKVKVRKPDS  163 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHH---HHHHHHH-EEEEEEECCTT
T ss_pred             ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHH---HHHHHHh-hhhEEeecCCc
Confidence            89999997421    12           6889999999999999998543 2333333   3344443 55555432222


Q ss_pred             CCCCCceEEEEEEec
Q 022962          256 QSPFGQRTAVVCLKS  270 (289)
Q Consensus       256 ~~~~~~r~lv~~~k~  270 (289)
                      ........+++.++.
T Consensus       164 ~~~~~~~~~~~~~~~  178 (180)
T 1ej0_A          164 SRARSREVYIVATGR  178 (180)
T ss_dssp             SCTTCCEEEEEEEEE
T ss_pred             ccccCceEEEEEccC
Confidence            222334555555544

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.54  E-value=5.1e-14  Score=131.36  Aligned_cols=125  Identities=21%  Similarity=0.178  Sum_probs=97.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.+++.+|..  ..+|+|+|+|+.+++.|++|++.++++|++++++|+.++.... ..+++||+|+++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            4679999999999999999987  6799999999999999999999999988999999998763210 013689999998


Q ss_pred             Cc-------------ccHHHHHHHHccccccCeEEEEEEcCC--cHHHHHH-HHHHHHHhCCeE
Q 022962          200 AV-------------AEMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKN-SERAVQLMGASL  247 (289)
Q Consensus       200 ~~-------------~~~~~ll~~~~~~LkpgG~l~~~~g~~--~~~ei~~-~~~~l~~~g~~~  247 (289)
                      ..             ..+..++..+.++|+|||.+++.....  ..+.... +.+.+...|..+
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~  350 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL  350 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            42             356789999999999999999876432  2222332 334556666544

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.54  E-value=3.7e-15  Score=130.69  Aligned_cols=103  Identities=13%  Similarity=0.010  Sum_probs=82.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHc---CCCC------------------------
Q 022962          122 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLT---QLLN------------------------  172 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~---~l~n------------------------  172 (289)
                      +.+|||+|||+|.+++.++..  .+..+|+|+|+|+.+++.|++++...   ++.+                        
T Consensus        52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (250)
T 1o9g_A           52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  131 (250)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhh
Confidence            579999999999999999987  67789999999999999999988766   4432                        


Q ss_pred             --EE-------------EEeccccccCCCC--cCCCCceEEEEcCc-------------ccHHHHHHHHccccccCeEEE
Q 022962          173 --VQ-------------IVRGRAETLGKDV--SFREQYDVAVARAV-------------AEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       173 --i~-------------~~~~d~~~~~~~~--~~~~~fD~V~sn~~-------------~~~~~ll~~~~~~LkpgG~l~  222 (289)
                        ++             ++++|+.+.....  ...++||+|++|..             ..+..+++.+.++|+|||+++
T Consensus       132 ~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  211 (250)
T 1o9g_A          132 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIA  211 (250)
T ss_dssp             HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             hhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEE
Confidence              66             9999987743100  01248999999831             235689999999999999999


Q ss_pred             EE
Q 022962          223 AA  224 (289)
Q Consensus       223 ~~  224 (289)
                      +.
T Consensus       212 ~~  213 (250)
T 1o9g_A          212 VT  213 (250)
T ss_dssp             EE
T ss_pred             Ee
Confidence            83

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.53  E-value=2.8e-14  Score=134.85  Aligned_cols=106  Identities=19%  Similarity=0.161  Sum_probs=85.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHH-------HHHHHHcC--CCCEEEEecccccc--CCCC
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFL-------EHAVSLTQ--LLNVQIVRGRAETL--GKDV  187 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a-------~~~~~~~~--l~ni~~~~~d~~~~--~~~~  187 (289)
                      +.++.+|||||||+|.+++.+|...+..+|+|||+|+.+++.|       +++++..|  ..|++++++|....  ... 
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~-  318 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA-  318 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH-
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccc-
Confidence            4468899999999999999999877777999999999999999       88888888  56899998754321  100 


Q ss_pred             cCCCCceEEEEcC---cccHHHHHHHHccccccCeEEEEEE
Q 022962          188 SFREQYDVAVARA---VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       188 ~~~~~fD~V~sn~---~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ...++||+|+++.   ..++...++++.+.|||||++++..
T Consensus       319 ~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          319 ELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             HHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEee
Confidence            0125799999973   2467788899999999999999753

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.53  E-value=1.4e-13  Score=128.83  Aligned_cols=126  Identities=17%  Similarity=0.086  Sum_probs=95.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +++.+|||+|||+|.+++.+|..  +.+|+++|+|+.+++.|++|++.++++ .++.++|+.++...  ..+.||+|+++
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l~~--~~~~fD~Ii~d  287 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRG--LEGPFHHVLLD  287 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHHHT--CCCCEEEEEEC
T ss_pred             cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHHHH--hcCCCCEEEEC
Confidence            34889999999999999999975  456999999999999999999999986 35679999875321  12449999998


Q ss_pred             Cc-------------ccHHHHHHHHccccccCeEEEEEEcC--CcHHHHH-HHHHHHHHhCCeEeEE
Q 022962          200 AV-------------AEMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVK-NSERAVQLMGASLLQL  250 (289)
Q Consensus       200 ~~-------------~~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~-~~~~~l~~~g~~~~~~  250 (289)
                      +.             ..+..+++.+.++|+|||.+++....  ...+++. .+.+.+...|.....+
T Consensus       288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~  354 (393)
T 4dmg_A          288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVH  354 (393)
T ss_dssp             CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence            53             25678999999999999999865532  2233433 3445566677654433

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.53  E-value=8.9e-14  Score=130.28  Aligned_cols=130  Identities=15%  Similarity=0.167  Sum_probs=100.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-C-CEEEEeccccccCCCC-cCCCCceEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-L-NVQIVRGRAETLGKDV-SFREQYDVA  196 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~-ni~~~~~d~~~~~~~~-~~~~~fD~V  196 (289)
                      .++.+|||+|||+|.+++.+|.. ...+|+|+|+|+.+++.|++|++.+++ + +++++++|+.++.... ...++||+|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I  297 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence            35789999999999999999975 356999999999999999999999998 6 8999999998763210 012589999


Q ss_pred             EEcCc-------------ccHHHHHHHHccccccCeEEEEEEcCC--cHHHHHH-HHHHHHHhCCeEeEE
Q 022962          197 VARAV-------------AEMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKN-SERAVQLMGASLLQL  250 (289)
Q Consensus       197 ~sn~~-------------~~~~~ll~~~~~~LkpgG~l~~~~g~~--~~~ei~~-~~~~l~~~g~~~~~~  250 (289)
                      +++..             ..+..++..+.+.|+|||.+++.....  ..++..+ +.+.+...|..+..+
T Consensus       298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i  367 (396)
T 3c0k_A          298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI  367 (396)
T ss_dssp             EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            99842             467889999999999999999876432  2233333 334667778654433

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.53  E-value=4.1e-14  Score=126.31  Aligned_cols=102  Identities=22%  Similarity=0.302  Sum_probs=83.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC----CCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL----LNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l----~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|++++...+.    .++.+..+|+.+++.....+++||+|+
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~  135 (293)
T 3thr_A           58 CHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  135 (293)
T ss_dssp             CCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEE
Confidence            679999999999999999876  56999999999999999998755432    368899999988751100137899999


Q ss_pred             Ec-C----ccc-------HHHHHHHHccccccCeEEEEEE
Q 022962          198 AR-A----VAE-------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       198 sn-~----~~~-------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      |+ .    +.+       +..+++++.++|||||++++..
T Consensus       136 ~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          136 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             ECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            96 2    234       8899999999999999999765

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.53  E-value=1.9e-14  Score=127.63  Aligned_cols=97  Identities=15%  Similarity=0.090  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC--CCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK--DVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~--~~~~~~~fD~V~s  198 (289)
                      ++.+|||||||+|.+++.+|..  +.+|+|+|+|+.|++.|++++...      +++.++.++..  ....+++||+|++
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~~~~~~fD~Vv~  116 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPKELAGHFDFVLN  116 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCGGGTTCCSEEEE
T ss_pred             CcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc------cceeeeeecccccccccCCCccEEEE
Confidence            4789999999999999999975  679999999999999999987654      22334444322  1122468999999


Q ss_pred             cCc------ccHHHHHHHHccccccCeEEEEEEc
Q 022962          199 RAV------AEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       199 n~~------~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      +.+      .+...+++.+.++| |||++++...
T Consensus       117 ~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          117 DRLINRFTTEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             hhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            853      35677899999999 9999998654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.53  E-value=4.8e-14  Score=120.90  Aligned_cols=116  Identities=16%  Similarity=0.233  Sum_probs=91.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||||||+|.++..++..      +|+|+|+.+++.++++       +++++++|+.+++..   +++||+|+++. 
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~---~~~fD~v~~~~~  111 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-------GVFVLKGTAENLPLK---DESFDFALMVTT  111 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSC---TTCEEEEEEESC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-------CCEEEEcccccCCCC---CCCeeEEEEcch
Confidence            569999999999998887632      9999999999998875       688999999887543   36899999985 


Q ss_pred             ---cccHHHHHHHHccccccCeEEEEEEcCCcH---------------------HHHHHHHHHHHHhCCeEeEEeee
Q 022962          201 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDPQ---------------------EEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       201 ---~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                         +.+...+++++.++|+|||.+++.......                     -...++.+.++.+||+++++...
T Consensus       112 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~  188 (219)
T 1vlm_A          112 ICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT  188 (219)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence               356789999999999999999986432110                     01244566778999999887755

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.53  E-value=5.1e-14  Score=128.75  Aligned_cols=96  Identities=18%  Similarity=0.229  Sum_probs=82.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||||||+|.+++.+++. +..+|+|+|+| .+++.|+++++.+++. +++++++|+++++.+   .++||+|+++.
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Ivs~~  113 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLP---FPKVDIIISEW  113 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCS---SSCEEEEEECC
T ss_pred             CCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCC---CCcccEEEEeC
Confidence            679999999999999998875 55699999999 5999999999999885 599999999987543   26899999984


Q ss_pred             c-------ccHHHHHHHHccccccCeEEE
Q 022962          201 V-------AEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       201 ~-------~~~~~ll~~~~~~LkpgG~l~  222 (289)
                      +       ..+..++..+.++|+|||.++
T Consensus       114 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          114 MGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             chhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            2       346789999999999999997

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.52  E-value=2e-13  Score=130.17  Aligned_cols=128  Identities=16%  Similarity=0.085  Sum_probs=96.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .++.+|||+|||+|..++.+|...++ ++|+|+|+|+.+++.+++|++++|+. +.++++|+.++...  .+++||+|++
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~--~~~~FD~Il~  176 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEA--FGTYFHRVLL  176 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHH--HCSCEEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhh--ccccCCEEEE
Confidence            45889999999999999999988654 79999999999999999999999998 99999999886521  2378999998


Q ss_pred             cCcc--------------------------cHHHHHHHHccccccCeEEEEEEcCCcHHH-HHHHHHHHHHh-CCeEeEE
Q 022962          199 RAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEE-VKNSERAVQLM-GASLLQL  250 (289)
Q Consensus       199 n~~~--------------------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e-i~~~~~~l~~~-g~~~~~~  250 (289)
                      ++..                          ....+++.+.++|||||+|++..-....+| -..+...++.+ +|++..+
T Consensus       177 D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~l~~~  256 (464)
T 3m6w_A          177 DAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDA  256 (464)
T ss_dssp             ECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEEEECC
T ss_pred             CCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcEEEec
Confidence            6310                          127899999999999999987543221111 12223344455 5665543

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.52  E-value=3.2e-14  Score=120.90  Aligned_cols=92  Identities=21%  Similarity=0.203  Sum_probs=78.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCC-EEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~-~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||+|||+|.++..+     +. +|+|+|+|+.+++.++++.     .+++++++|+.+++..   +++||+|+++.
T Consensus        37 ~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~---~~~fD~v~~~~  103 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFP---GESFDVVLLFT  103 (211)
T ss_dssp             CSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSC---SSCEEEEEEES
T ss_pred             CCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCC---CCcEEEEEEcC
Confidence            679999999999977665     45 9999999999999998865     4789999999887643   36899999984


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEc
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                          +.+...+++++.++|||||.+++...
T Consensus       104 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  133 (211)
T 2gs9_A          104 TLEFVEDVERVLLEARRVLRPGGALVVGVL  133 (211)
T ss_dssp             CTTTCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhhcCCHHHHHHHHHHHcCCCCEEEEEec
Confidence                45788999999999999999998653

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.52  E-value=5.1e-14  Score=122.22  Aligned_cols=103  Identities=20%  Similarity=0.371  Sum_probs=83.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ..++.+|||||||+|.++..++...+ .+|+++|+++.+++.|+++.+..++.+++++.+|+.. ...  ...+||+|++
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~--~~~~fD~Ii~  164 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK-GFP--PKAPYDVIIV  164 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CCG--GGCCEEEEEE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc-CCC--CCCCccEEEE
Confidence            34578999999999999999998876 8999999999999999999999998889999999732 221  1246999999


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEEEcC
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      +....  .+.+.+.+.|+|||++++..+.
T Consensus       165 ~~~~~--~~~~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          165 TAGAP--KIPEPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             CSBBS--SCCHHHHHTEEEEEEEEEEECS
T ss_pred             CCcHH--HHHHHHHHhcCCCcEEEEEEec
Confidence            85432  1234677899999999998764

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.51  E-value=1.3e-13  Score=116.40  Aligned_cols=113  Identities=12%  Similarity=0.122  Sum_probs=83.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|++++.     +++++++|+.+++      ++||+|++|..
T Consensus        52 ~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~------~~~D~v~~~~p  119 (200)
T 1ne2_A           52 GRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS------GKYDTWIMNPP  119 (200)
T ss_dssp             TSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC------CCEEEEEECCC
T ss_pred             CCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC------CCeeEEEECCC
Confidence            679999999999999999876 55689999999999999998765     6899999998863      57999999953


Q ss_pred             ------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          202 ------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       202 ------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                            .....+++.+.+.+  |+ +++.........   +.+.+...| .+..+...
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~--g~-~~~~~~~~~~~~---~~~~~~~~g-~~~~~~~~  170 (200)
T 1ne2_A          120 FGSVVKHSDRAFIDKAFETS--MW-IYSIGNAKARDF---LRREFSARG-DVFREEKV  170 (200)
T ss_dssp             C-------CHHHHHHHHHHE--EE-EEEEEEGGGHHH---HHHHHHHHE-EEEEEEEE
T ss_pred             chhccCchhHHHHHHHHHhc--Cc-EEEEEcCchHHH---HHHHHHHCC-CEEEEEEE
Confidence                  12346788888877  44 554444333333   344556777 65555433

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.51  E-value=3.3e-13  Score=128.54  Aligned_cols=131  Identities=21%  Similarity=0.130  Sum_probs=99.5

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCC-CCceE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFR-EQYDV  195 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~-~~fD~  195 (289)
                      ...++.+|||+|||+|..++.++...++ ++|+|+|+|+.+++.++++++.+|++|++++++|+.++...  +. ++||+
T Consensus       256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~--~~~~~fD~  333 (450)
T 2yxl_A          256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI--IGEEVADK  333 (450)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS--SCSSCEEE
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh--hccCCCCE
Confidence            3456889999999999999999988766 89999999999999999999999998999999999886531  22 67999


Q ss_pred             EEEcCcc----------c----------------HHHHHHHHccccccCeEEEEEEcCC-cHHHHHHHHHHHHHh-CCeE
Q 022962          196 AVARAVA----------E----------------MRILAEYCLPLVRVGGLFVAAKGHD-PQEEVKNSERAVQLM-GASL  247 (289)
Q Consensus       196 V~sn~~~----------~----------------~~~ll~~~~~~LkpgG~l~~~~g~~-~~~ei~~~~~~l~~~-g~~~  247 (289)
                      |++++..          +                ...+++.+.++|||||++++..-.. ..+.-..+...++.+ +|.+
T Consensus       334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~  413 (450)
T 2yxl_A          334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKL  413 (450)
T ss_dssp             EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEE
T ss_pred             EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence            9986210          1                1678999999999999999765322 222111223345565 6766


Q ss_pred             eEE
Q 022962          248 LQL  250 (289)
Q Consensus       248 ~~~  250 (289)
                      ..+
T Consensus       414 ~~~  416 (450)
T 2yxl_A          414 VPL  416 (450)
T ss_dssp             CCC
T ss_pred             eec
Confidence            543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.51  E-value=1.5e-13  Score=115.19  Aligned_cols=95  Identities=15%  Similarity=0.136  Sum_probs=72.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCC---------CEEEEEeCChHHHHHHHHHHHHcCCCCEEEE-eccccccCCC----
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPD---------WKVTLLESMNKRCVFLEHAVSLTQLLNVQIV-RGRAETLGKD----  186 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~---------~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~-~~d~~~~~~~----  186 (289)
                      ++.+|||+|||+|.+++.++...+.         .+|+|+|+|+.+           .+.+++++ ++|+.+....    
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~~   90 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRIL   90 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHHH
Confidence            4789999999999999999988764         799999999842           24578999 8988764210    


Q ss_pred             -CcCCCCceEEEEcCcc--------cH-------HHHHHHHccccccCeEEEEEEc
Q 022962          187 -VSFREQYDVAVARAVA--------EM-------RILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       187 -~~~~~~fD~V~sn~~~--------~~-------~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                       ...+++||+|+|+...        +.       ..+++++.++|||||+|++...
T Consensus        91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence             0012579999996411        11       5789999999999999998754

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.51  E-value=2.7e-13  Score=126.99  Aligned_cols=126  Identities=19%  Similarity=0.133  Sum_probs=96.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCC-cCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV-SFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~-~~~~~fD~V~s  198 (289)
                      ++.+|||+|||+|.+++.+|.. +..+|+|+|+|+.+++.|++|++.++++ +++++++|+.++.... ...++||+|++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            5789999999999999999975 4569999999999999999999999987 8999999998753210 01368999999


Q ss_pred             cCc-------------ccHHHHHHHHccccccCeEEEEEEcCC--cHHHHHHH-HHHHHHhCCeE
Q 022962          199 RAV-------------AEMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKNS-ERAVQLMGASL  247 (289)
Q Consensus       199 n~~-------------~~~~~ll~~~~~~LkpgG~l~~~~g~~--~~~ei~~~-~~~l~~~g~~~  247 (289)
                      +..             ..+..++..+.++|+|||.+++.....  ..++..++ .+.+...|..+
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~  360 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFL  360 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            842             356789999999999999988775432  23333332 23455566543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.51  E-value=6.5e-14  Score=120.71  Aligned_cols=98  Identities=22%  Similarity=0.271  Sum_probs=81.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++...  .+|+|+|+|+.+++.++++....+  +++++++|+.+...   ..++||+|+++.
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~---~~~~fD~v~~~~  142 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE---EEKPYDRVVVWA  142 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG---GGCCEEEEEESS
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc---cCCCccEEEECC
Confidence            47899999999999999999874  799999999999999999988776  89999999987322   136899999986


Q ss_pred             cccHHHHHHHHccccccCeEEEEEEcC
Q 022962          201 VAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       201 ~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      ...  .+.+.+.++|+|||++++..+.
T Consensus       143 ~~~--~~~~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          143 TAP--TLLCKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             BBS--SCCHHHHHTEEEEEEEEEEECS
T ss_pred             cHH--HHHHHHHHHcCCCcEEEEEEcC
Confidence            432  1234678899999999998764

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.51  E-value=1.3e-13  Score=124.70  Aligned_cols=104  Identities=11%  Similarity=0.111  Sum_probs=84.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc-------CCCCEEEEeccccccCCCCc---CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------QLLNVQIVRGRAETLGKDVS---FRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-------~l~ni~~~~~d~~~~~~~~~---~~~  191 (289)
                      +.+|||||||+|..+..++. .+..+|+|+|+|+.+++.++++....       +..+++++++|+++++....   .++
T Consensus        35 ~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           35 DITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            67999999999999998886 46789999999999999999987764       34479999999998751101   135


Q ss_pred             CceEEEEcCc--------ccHHHHHHHHccccccCeEEEEEEc
Q 022962          192 QYDVAVARAV--------AEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       192 ~fD~V~sn~~--------~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      +||+|+|+..        .+...+++++.++|||||.+++...
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            8999999742        2356999999999999999998654

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.50  E-value=4.3e-15  Score=129.63  Aligned_cols=142  Identities=13%  Similarity=0.085  Sum_probs=89.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEE-eccccccCCCCcCCC-CceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIV-RGRAETLGKDVSFRE-QYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~-~~d~~~~~~~~~~~~-~fD~V~sn  199 (289)
                      +.+|||||||+|.++..+++. +..+|+|||+|+.|++.++++..     ++... ..++..+... .... .||.+.+.
T Consensus        38 g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~d~~~~D  110 (232)
T 3opn_A           38 GKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDE-----RVVVMEQFNFRNAVLA-DFEQGRPSFTSID  110 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCT-----TEEEECSCCGGGCCGG-GCCSCCCSEEEEC
T ss_pred             CCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCc-----cccccccceEEEeCHh-HcCcCCCCEEEEE
Confidence            679999999999999999876 44699999999999998766432     22211 1122211100 0111 24444433


Q ss_pred             -CcccHHHHHHHHccccccCeEEEEEEcC----------------C---cHHHHHHHHHHHHHhCCeEeEEeeeecCCCC
Q 022962          200 -AVAEMRILAEYCLPLVRVGGLFVAAKGH----------------D---PQEEVKNSERAVQLMGASLLQLCSVESQSPF  259 (289)
Q Consensus       200 -~~~~~~~ll~~~~~~LkpgG~l~~~~g~----------------~---~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~  259 (289)
                       .+..+..+++++.++|||||.+++...+                +   ......++.+.++..||.+..+..-....+.
T Consensus       111 ~v~~~l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g~~  190 (232)
T 3opn_A          111 VSFISLDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKGGA  190 (232)
T ss_dssp             CSSSCGGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCBTT
T ss_pred             EEhhhHHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCCCC
Confidence             2334578999999999999999986311                0   1123455677788999998887654333333


Q ss_pred             C-ceEEEEEEec
Q 022962          260 G-QRTAVVCLKS  270 (289)
Q Consensus       260 ~-~r~lv~~~k~  270 (289)
                      + ...++.++|.
T Consensus       191 gn~e~l~~~~~~  202 (232)
T 3opn_A          191 GNVEFLVHLLKD  202 (232)
T ss_dssp             TBCCEEEEEEES
T ss_pred             CCHHHHHHHhhc
Confidence            3 3445566654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.50  E-value=6.4e-14  Score=140.23  Aligned_cols=125  Identities=11%  Similarity=0.137  Sum_probs=97.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+|||+|||+|.+++.+|.. ...+|++||+|+.+++.|++|++.++++  +++++++|+.++...  ..++||+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~--~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE--ANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH--CCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh--cCCCccEEEE
Confidence            4789999999999999998864 4567999999999999999999999986  799999999884221  1368999999


Q ss_pred             cCc---------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          199 RAV---------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       199 n~~---------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      ++.               ..+..+++.+.++|+|||+|++.........-   .+.+...|++...+.
T Consensus       616 DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~---~~~l~~~g~~~~~i~  680 (703)
T 3v97_A          616 DPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMD---LDGLAKLGLKAQEIT  680 (703)
T ss_dssp             CCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCC---HHHHHHTTEEEEECT
T ss_pred             CCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccC---HHHHHHcCCceeeee
Confidence            841               25678899999999999999987764211111   224557888754443

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.50  E-value=3.7e-14  Score=132.22  Aligned_cols=102  Identities=14%  Similarity=0.153  Sum_probs=89.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc---------------CCCCEEEEeccccccCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT---------------QLLNVQIVRGRAETLGKD  186 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~---------------~l~ni~~~~~d~~~~~~~  186 (289)
                      +.+|||+|||+|..++.+|...++.+|+++|+|+++++.+++|++.+               ++++++++++|+.++...
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~  127 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  127 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence            67999999999999999998877789999999999999999999999               887799999999876431


Q ss_pred             CcCCCCceEEEEcCcccHHHHHHHHccccccCeEEEEEE
Q 022962          187 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       187 ~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                        ..++||+|+.++......+++.+.+.|++||.+++..
T Consensus       128 --~~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          128 --RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             --STTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --ccCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence              1357999999876666789999999999999888753

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.50  E-value=3.8e-14  Score=122.30  Aligned_cols=103  Identities=16%  Similarity=0.167  Sum_probs=83.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCC------CCEEEEEeCChHHHHHHHHHHHHcC-----CCCEEEEeccccccCCCCc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACP------DWKVTLLESMNKRCVFLEHAVSLTQ-----LLNVQIVRGRAETLGKDVS  188 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p------~~~V~~iD~s~~~l~~a~~~~~~~~-----l~ni~~~~~d~~~~~~~~~  188 (289)
                      .++.+|||||||+|..+..++...+      ..+|+++|+++.+++.++++++..+     ..+++++++|+.+....  
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--  160 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP--  160 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG--
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc--
Confidence            3478999999999999999998654      3699999999999999999988876     56899999999873211  


Q ss_pred             CCCCceEEEEcCcccHHHHHHHHccccccCeEEEEEEcC
Q 022962          189 FREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       189 ~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                       .++||+|+++....  .+.+.+.+.|||||++++..+.
T Consensus       161 -~~~fD~I~~~~~~~--~~~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          161 -NAPYNAIHVGAAAP--DTPTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             -GCSEEEEEECSCBS--SCCHHHHHTEEEEEEEEEEESC
T ss_pred             -CCCccEEEECCchH--HHHHHHHHHhcCCCEEEEEEec
Confidence             26899999986432  2446778899999999998764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.50  E-value=1.5e-13  Score=122.00  Aligned_cols=138  Identities=8%  Similarity=-0.028  Sum_probs=100.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH----cCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL----TQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~----~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.+|||||||+|..+..+++. + .+|+++|+|+.+++.|+++...    ..-++++++.+|..++.      ++||+|+
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~------~~fD~Ii  144 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI------KKYDLIF  144 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC------CCEEEEE
T ss_pred             CCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH------hhCCEEE
Confidence            579999999999999888876 7 8999999999999999886432    22347999999988753      5799999


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEEEcCC--cHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  270 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~~--~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~  270 (289)
                      ++...+ ..+++.+.+.|+|||.+++..+..  ..+.+..+.+.++.. |..........|. .+.+..+++.|.
T Consensus       145 ~d~~dp-~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~~~~~~~~vP~-~g~~~~~~as~~  216 (262)
T 2cmg_A          145 CLQEPD-IHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGV-FSVAMPFVAPLRI-LSNKGYIYASFK  216 (262)
T ss_dssp             ESSCCC-HHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTT-CSEEEEECCTTCT-TCCEEEEEEESS
T ss_pred             ECCCCh-HHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHh-CCceEEEEEccCC-CcccEEEEeeCC
Confidence            986443 458999999999999999865432  334555555555554 5544443222344 556666666654

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.49  E-value=8.4e-14  Score=125.13  Aligned_cols=143  Identities=13%  Similarity=-0.011  Sum_probs=96.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEE-EeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQI-VRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~-~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||||.++..+++. +..+|+|||+|+.|++.+.++    . .++.. ...++..+........+||+|+++
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~----~-~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d  158 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ----D-DRVRSMEQYNFRYAEPVDFTEGLPSFASID  158 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT----C-TTEEEECSCCGGGCCGGGCTTCCCSEEEEC
T ss_pred             cccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh----C-cccceecccCceecchhhCCCCCCCEEEEE
Confidence            3679999999999999888865 567999999999999875431    1 23333 234555543321112349999987


Q ss_pred             -CcccHHHHHHHHccccccCeEEEEEEc--------------CC-----cHHHHHHHHHHHHHhCCeEeEEeeeecCCCC
Q 022962          200 -AVAEMRILAEYCLPLVRVGGLFVAAKG--------------HD-----PQEEVKNSERAVQLMGASLLQLCSVESQSPF  259 (289)
Q Consensus       200 -~~~~~~~ll~~~~~~LkpgG~l~~~~g--------------~~-----~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~  259 (289)
                       .+..+..++.++.++|+|||.+++...              .-     +...+.++...+..+||.+..+..-..+.+.
T Consensus       159 ~sf~sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~~  238 (291)
T 3hp7_A          159 VSFISLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGH  238 (291)
T ss_dssp             CSSSCGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCGG
T ss_pred             eeHhhHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Confidence             455778999999999999999998621              10     1123455667788999998887643333344


Q ss_pred             CceE-EEEEEe
Q 022962          260 GQRT-AVVCLK  269 (289)
Q Consensus       260 ~~r~-lv~~~k  269 (289)
                      |-.. ++.+++
T Consensus       239 gn~e~l~~~~~  249 (291)
T 3hp7_A          239 GNIEFLAHLEK  249 (291)
T ss_dssp             GCCCEEEEEEE
T ss_pred             cCHHHHHHhhh
Confidence            4433 444544

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.49  E-value=3.5e-13  Score=113.89  Aligned_cols=114  Identities=16%  Similarity=0.131  Sum_probs=79.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC----cCC----CC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----SFR----EQ  192 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~----~~~----~~  192 (289)
                      ++.+|||+|||+|.++..++..  ..+|+|||+++..           ...+++++++|+.+.....    .+.    ++
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~   91 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEGIEK   91 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred             CCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence            4789999999999999999876  7899999999742           3458999999998753110    011    48


Q ss_pred             ceEEEEcCcc---------------cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          193 YDVAVARAVA---------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       193 fD~V~sn~~~---------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                      ||+|+|+...               ....+++.+.++|||||.|++..-....  ...+...++. .|..+++
T Consensus        92 ~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~--~~~~~~~l~~-~F~~v~~  161 (191)
T 3dou_A           92 VDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM--TNDFIAIWRK-NFSSYKI  161 (191)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH--HHHHHHHHGG-GEEEEEE
T ss_pred             ceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC--HHHHHHHHHH-hcCEEEE
Confidence            9999997411               1357788999999999999975532222  2233444433 4554444

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.48  E-value=4.7e-13  Score=123.53  Aligned_cols=140  Identities=16%  Similarity=0.125  Sum_probs=105.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ....+|+|||||+|..++.+++.+|+.+++..|. +.+++.+++++...+.++|+++.+|+.+.+.     ..+|+|++.
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~-----~~~D~~~~~  251 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL-----PEADLYILA  251 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC-----CCCSEEEEE
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC-----CCceEEEee
Confidence            3467999999999999999999999999999997 7899999988766666789999999876432     358999987


Q ss_pred             Cc------ccHHHHHHHHccccccCeEEEEEEcC---C---c-HHH----------------HHHHHHHHHHhCCeEeEE
Q 022962          200 AV------AEMRILAEYCLPLVRVGGLFVAAKGH---D---P-QEE----------------VKNSERAVQLMGASLLQL  250 (289)
Q Consensus       200 ~~------~~~~~ll~~~~~~LkpgG~l~~~~g~---~---~-~~e----------------i~~~~~~l~~~g~~~~~~  250 (289)
                      .+      .....+|+++++.|+|||++++....   +   . ...                ..++.+.++++||+.+++
T Consensus       252 ~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v  331 (353)
T 4a6d_A          252 RVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQF  331 (353)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred             eecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence            42      23468899999999999999986521   1   1 111                234566788999998888


Q ss_pred             eeeecCCCCCceEEEEEEec
Q 022962          251 CSVESQSPFGQRTAVVCLKS  270 (289)
Q Consensus       251 ~~~~~~~~~~~r~lv~~~k~  270 (289)
                      ...     .+...+|+.+|.
T Consensus       332 ~~~-----~~~~~~i~ArKg  346 (353)
T 4a6d_A          332 KKT-----GAIYDAILARKG  346 (353)
T ss_dssp             ECC-----SSSCEEEEEECC
T ss_pred             EEc-----CCceEEEEEEec
Confidence            632     344566766653

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.48  E-value=2.6e-13  Score=126.03  Aligned_cols=141  Identities=17%  Similarity=0.099  Sum_probs=100.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC------------
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF------------  189 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~------------  189 (289)
                      +.+|||+|||+|.+++.+|..  ..+|+|+|+|+.+++.|++|++.++++|++++++|++++......            
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~  291 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL  291 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence            578999999999999999864  569999999999999999999999998999999999875321000            


Q ss_pred             -CCCceEEEEcCcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEEE
Q 022962          190 -REQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVVC  267 (289)
Q Consensus       190 -~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~~  267 (289)
                       +.+||+|+++....  .+.+.+.+.|+++|.+++..- +...-..++. .+.. |+.+.++..++ +|....-..++++
T Consensus       292 ~~~~fD~Vv~dPPr~--g~~~~~~~~l~~~g~ivyvsc-~p~t~ard~~-~l~~-~y~~~~~~~~D~FP~T~HvE~v~ll  366 (369)
T 3bt7_A          292 KSYQCETIFVDPPRS--GLDSETEKMVQAYPRILYISC-NPETLCKNLE-TLSQ-THKVERLALFDQFPYTHHMQCGVLL  366 (369)
T ss_dssp             GGCCEEEEEECCCTT--CCCHHHHHHHTTSSEEEEEES-CHHHHHHHHH-HHHH-HEEEEEEEEECCSTTSSCCEEEEEE
T ss_pred             ccCCCCEEEECcCcc--ccHHHHHHHHhCCCEEEEEEC-CHHHHHHHHH-HHhh-CcEEEEEEeeccCCCCCcEEEEEEE
Confidence             03799999985321  122334455668888876653 3332233332 3332 68888888886 4655555666666


Q ss_pred             Ee
Q 022962          268 LK  269 (289)
Q Consensus       268 ~k  269 (289)
                      +|
T Consensus       367 ~r  368 (369)
T 3bt7_A          367 TA  368 (369)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.48  E-value=5.1e-14  Score=122.93  Aligned_cols=96  Identities=15%  Similarity=0.143  Sum_probs=78.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHH----CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccccc---CCCCcCCCCce
Q 022962          122 NLKLVDVGTGAGLPGLVLAIA----CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL---GKDVSFREQYD  194 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~----~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~---~~~~~~~~~fD  194 (289)
                      +.+|||||||+|..++.+|..    .|+++|+|||+|+.+++.|+    ... .+|+++++|+.+.   +..  ...+||
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~-~~v~~~~gD~~~~~~l~~~--~~~~fD  154 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDM-ENITLHQGDCSDLTTFEHL--REMAHP  154 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGC-TTEEEEECCSSCSGGGGGG--SSSCSS
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccC-CceEEEECcchhHHHHHhh--ccCCCC
Confidence            569999999999999999987    67899999999999988887    222 5799999999874   321  123799


Q ss_pred             EEEEcCc-ccHHHHHHHHcc-ccccCeEEEEE
Q 022962          195 VAVARAV-AEMRILAEYCLP-LVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~-~~~~~ll~~~~~-~LkpgG~l~~~  224 (289)
                      +|++++. .++..+++++.+ +|||||++++.
T Consensus       155 ~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~  186 (236)
T 2bm8_A          155 LIFIDNAHANTFNIMKWAVDHLLEEGDYFIIE  186 (236)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             EEEECCchHhHHHHHHHHHHhhCCCCCEEEEE
Confidence            9998743 367889999997 99999999984

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.48  E-value=6.2e-14  Score=123.71  Aligned_cols=94  Identities=18%  Similarity=0.163  Sum_probs=79.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||||||+|.++..++...++.+|+|+|+|+.+++.|+++.     .++.++.+|+++++..   +++||+|+++..
T Consensus        86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~---~~~fD~v~~~~~  157 (269)
T 1p91_A           86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFS---DTSMDAIIRIYA  157 (269)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBC---TTCEEEEEEESC
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCCC---CCceeEEEEeCC
Confidence            67999999999999999998877889999999999999988753     4688999999887643   368999998754


Q ss_pred             ccHHHHHHHHccccccCeEEEEEEc
Q 022962          202 AEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       202 ~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      .   ..++++.++|||||++++...
T Consensus       158 ~---~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          158 P---CKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             C---CCHHHHHHHEEEEEEEEEEEE
T ss_pred             h---hhHHHHHHhcCCCcEEEEEEc
Confidence            3   357888999999999998764

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.47  E-value=7.9e-14  Score=131.02  Aligned_cols=139  Identities=12%  Similarity=0.083  Sum_probs=98.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEE--EEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQ--IVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~--~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|+++    +.....  +...+.++++..   +++||+|++
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~---~~~fD~I~~  177 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT---EGPANVIYA  177 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH---HCCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC---CCCEEEEEE
Confidence            4789999999999999998865  56999999999999988774    443221  223444444322   378999999


Q ss_pred             cC----cccHHHHHHHHccccccCeEEEEEEcCC-----------------cHHHHHHHHHHHHHhCCeEeEEeeeecCC
Q 022962          199 RA----VAEMRILAEYCLPLVRVGGLFVAAKGHD-----------------PQEEVKNSERAVQLMGASLLQLCSVESQS  257 (289)
Q Consensus       199 n~----~~~~~~ll~~~~~~LkpgG~l~~~~g~~-----------------~~~ei~~~~~~l~~~g~~~~~~~~~~~~~  257 (289)
                      +.    +.++..+++++.++|||||++++.....                 ..-....+.+.++.+||+++++..+.  .
T Consensus       178 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~--~  255 (416)
T 4e2x_A          178 ANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQRLP--V  255 (416)
T ss_dssp             ESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEEEC--G
T ss_pred             CChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEEcc--C
Confidence            85    4578999999999999999999875320                 00012345667789999999887652  2


Q ss_pred             CCCceEEEEEEecC
Q 022962          258 PFGQRTAVVCLKSR  271 (289)
Q Consensus       258 ~~~~r~lv~~~k~~  271 (289)
                       .+....+++.+..
T Consensus       256 -~~g~l~~~~~~~~  268 (416)
T 4e2x_A          256 -HGGEVRYTLARQG  268 (416)
T ss_dssp             -GGSEEEEEEEETT
T ss_pred             -CCCEEEEEEEeCC
Confidence             2444455555543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.47  E-value=1.8e-13  Score=131.19  Aligned_cols=104  Identities=18%  Similarity=0.224  Sum_probs=87.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|..++.+|...+ .++|+|+|+|+.+++.+++|++++|+.|++++++|+.++...  .+++||.|+++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~--~~~~fD~Il~D  194 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA--VPEMFDAILLD  194 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH--STTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh--ccccCCEEEEC
Confidence            588999999999999999998764 589999999999999999999999998999999999886431  23689999996


Q ss_pred             Ccc--------------------------cHHHHHHHHccccccCeEEEEEEc
Q 022962          200 AVA--------------------------EMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       200 ~~~--------------------------~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      +..                          ....+++.+.++|||||++++...
T Consensus       195 ~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             CCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            310                          024789999999999999997653

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.47  E-value=7.3e-14  Score=130.58  Aligned_cols=102  Identities=12%  Similarity=0.122  Sum_probs=88.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCC--EEEEeccccccCC-CCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGK-DVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~n--i~~~~~d~~~~~~-~~~~~~~fD~V~  197 (289)
                      +.+|||++||+|.+++.+|...++ .+|+++|+|+.+++.+++|++.+++++  ++++++|+.++.. .  ..++||+|+
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~--~~~~fD~V~  130 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE--WGFGFDYVD  130 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC--CSSCEEEEE
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh--hCCCCcEEE
Confidence            779999999999999999987544 689999999999999999999999976  9999999987532 2  135799999


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +++......+++.+.+.|++||.+++..
T Consensus       131 lDP~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          131 LDPFGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             ECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            9986656779999999999999988765

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.46  E-value=2.1e-13  Score=119.97  Aligned_cols=94  Identities=19%  Similarity=0.243  Sum_probs=78.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.++++..    .+  ++++|+.+++..   +++||+|++.. 
T Consensus        55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~~---~~~fD~v~~~~~  123 (260)
T 2avn_A           55 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPFP---SGAFEAVLALGD  123 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCSC---TTCEEEEEECSS
T ss_pred             CCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCCC---CCCEEEEEEcch
Confidence            679999999999999998865  5799999999999999988643    23  788999887643   37899999974 


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEc
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                          ..+...+++++.++|||||.+++...
T Consensus       124 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          124 VLSYVENKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             HHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence                24578999999999999999998653

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.46  E-value=4.4e-13  Score=123.19  Aligned_cols=142  Identities=10%  Similarity=0.068  Sum_probs=101.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC-----CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPD-----WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~-----~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      +.+|||+|||+|.+++.++...+.     .+|+|+|+++.+++.|+.++...|+ ++.++++|..+...    .++||+|
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~~----~~~fD~I  205 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLL----VDPVDVV  205 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCC----CCCEEEE
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCccc----cCCccEE
Confidence            679999999999999998877543     7899999999999999999998888 78999999866322    3689999


Q ss_pred             EEcCc----c-----------------cH-HHHHHHHccccccCeEEEEEE-----cCCcHHHHHHHHHHHHHhCCeEeE
Q 022962          197 VARAV----A-----------------EM-RILAEYCLPLVRVGGLFVAAK-----GHDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       197 ~sn~~----~-----------------~~-~~ll~~~~~~LkpgG~l~~~~-----g~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                      ++|..    .                 +. ..+++.+.+.|+|||++++..     +.....++   .+.+.+.|+. ..
T Consensus       206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~i---r~~l~~~~~~-~~  281 (344)
T 2f8l_A          206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKV---DKFIKKNGHI-EG  281 (344)
T ss_dssp             EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHH---HHHHHHHEEE-EE
T ss_pred             EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHH---HHHHHhCCeE-EE
Confidence            99943    0                 01 258999999999999999887     33444444   3445566652 22


Q ss_pred             Eeeee---cCCCCCceEEEEEEecCC
Q 022962          250 LCSVE---SQSPFGQRTAVVCLKSRR  272 (289)
Q Consensus       250 ~~~~~---~~~~~~~r~lv~~~k~~~  272 (289)
                      +..+.   +........+++++|.++
T Consensus       282 ii~lp~~~F~~~~~~~~i~vl~k~~~  307 (344)
T 2f8l_A          282 IIKLPETLFKSEQARKSILILEKADV  307 (344)
T ss_dssp             EEECCGGGSCC-CCCEEEEEEEECCT
T ss_pred             eeeCChhhccCCCCceEEEEEECCCC
Confidence            22221   112223445666776543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.46  E-value=6.4e-13  Score=118.54  Aligned_cols=102  Identities=10%  Similarity=0.047  Sum_probs=82.7

Q ss_pred             CCeEEEEcCCC---ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---------CCcC
Q 022962          122 NLKLVDVGTGA---GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---------DVSF  189 (289)
Q Consensus       122 ~~~VLDiGcG~---G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---------~~~~  189 (289)
                      ..+|||||||+   |..+..++...|+.+|+++|+|+.|++.|++++..  ..+++++++|+.+...         ...+
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~d~  155 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMIDF  155 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccCCC
Confidence            46999999999   98877777778899999999999999999998743  2479999999976420         0011


Q ss_pred             CCCceEEEEcCc----cc--HHHHHHHHccccccCeEEEEEEc
Q 022962          190 REQYDVAVARAV----AE--MRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       190 ~~~fD~V~sn~~----~~--~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                       ++||+|+++.+    .+  ...+++++.++|+|||+|++...
T Consensus       156 -~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~  197 (274)
T 2qe6_A          156 -SRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL  197 (274)
T ss_dssp             -TSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             -CCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence             47999999852    23  78999999999999999998764

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.45  E-value=1.3e-13  Score=123.10  Aligned_cols=103  Identities=16%  Similarity=0.164  Sum_probs=79.4

Q ss_pred             CCeEEEEcCCCCh----HHHHHHHHCC----CCEEEEEeCChHHHHHHHHHHH--------------H---------cC-
Q 022962          122 NLKLVDVGTGAGL----PGLVLAIACP----DWKVTLLESMNKRCVFLEHAVS--------------L---------TQ-  169 (289)
Q Consensus       122 ~~~VLDiGcG~G~----~~l~la~~~p----~~~V~~iD~s~~~l~~a~~~~~--------------~---------~~-  169 (289)
                      +.+|||+|||||.    +++.++...+    +.+|+|+|+|+.|++.|++++-              +         .+ 
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            5699999999998    6666776544    4699999999999999998641              0         01 


Q ss_pred             --C-----CCEEEEeccccccCCCCcCCCCceEEEEcCcc------cHHHHHHHHccccccCeEEEEEEc
Q 022962          170 --L-----LNVQIVRGRAETLGKDVSFREQYDVAVARAVA------EMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       170 --l-----~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~------~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                        +     ++|+|.++|+.+.+.+  ..++||+|+|+.+-      ....+++.+.+.|+|||+|++..+
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~~~~--~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~s  253 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEKQYN--VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS  253 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSCC--CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             eeechhhcccCeEEecccCCCCCC--cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence              0     2699999999874321  13689999998542      347999999999999999998544

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.45  E-value=1.6e-12  Score=123.12  Aligned_cols=106  Identities=13%  Similarity=0.163  Sum_probs=87.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ..++.+|||+|||+|..++.++...++++|+|+|+|+.+++.++++++.+|+ +++++++|+.++... ..+++||+|++
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~-~~~~~fD~Vl~  321 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQW-CGEQQFDRILL  321 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHH-HTTCCEEEEEE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhh-cccCCCCEEEE
Confidence            4568899999999999999999988778999999999999999999999998 588999999876421 01267999998


Q ss_pred             cCcc----------c----------------HHHHHHHHccccccCeEEEEEEc
Q 022962          199 RAVA----------E----------------MRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       199 n~~~----------~----------------~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      ++..          +                ...+++.+.++|||||++++...
T Consensus       322 D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc  375 (429)
T 1sqg_A          322 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  375 (429)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             eCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            6310          1                15889999999999999998653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.44  E-value=2.1e-12  Score=122.10  Aligned_cols=131  Identities=10%  Similarity=0.116  Sum_probs=96.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .++.+|||+|||+|.+++.+|..  ..+|+|+|+|+.+++.|++|++.++++ ++++++|++++..     .+||+|+++
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~-----~~fD~Vv~d  360 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV-----KGFDTVIVD  360 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC-----TTCSEEEEC
T ss_pred             CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc-----cCCCEEEEc
Confidence            45789999999999999999975  569999999999999999999999987 9999999998643     379999998


Q ss_pred             Ccc-c-HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEE
Q 022962          200 AVA-E-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAV  265 (289)
Q Consensus       200 ~~~-~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv  265 (289)
                      ... . .+.+++.+. .|+|+|.+++..++  ..-..++    ....+.+.++..++ +|....-..++
T Consensus       361 PPr~g~~~~~~~~l~-~l~p~givyvsc~p--~tlarDl----~~l~y~l~~~~~~DmFP~T~HvE~v~  422 (425)
T 2jjq_A          361 PPRAGLHPRLVKRLN-REKPGVIVYVSCNP--ETFARDV----KMLDYRIDEIVALDMFPHTPHVELVA  422 (425)
T ss_dssp             CCTTCSCHHHHHHHH-HHCCSEEEEEESCH--HHHHHHH----HHSSCCEEEEEEECCSTTSSCCEEEE
T ss_pred             CCccchHHHHHHHHH-hcCCCcEEEEECCh--HHHHhHH----hhCeEEEEEEEEECcCCCCceEEEEE
Confidence            532 2 234555554 48999999886532  2222222    22227788888776 34433333333

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.41  E-value=7.5e-13  Score=132.24  Aligned_cols=101  Identities=17%  Similarity=0.127  Sum_probs=82.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHH------cCCCCEEEEeccccccCCCCcCCCCc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSL------TQLLNVQIVRGRAETLGKDVSFREQY  193 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~------~~l~ni~~~~~d~~~~~~~~~~~~~f  193 (289)
                      ++.+|||||||+|.+++.++... +..+|+|||+|+.|++.|+++++.      .++.+++++++|+.+++..   .++|
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~---d~sF  797 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSR---LHDV  797 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTT---SCSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcc---cCCe
Confidence            47899999999999999999876 457999999999999999986653      3566899999999998654   3789


Q ss_pred             eEEEEcCc----cc--HHHHHHHHccccccCeEEEEEE
Q 022962          194 DVAVARAV----AE--MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       194 D~V~sn~~----~~--~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      |+|+++.+    .+  ...+++++.++|||| .+++..
T Consensus       798 DlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIIST  834 (950)
T 3htx_A          798 DIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVST  834 (950)
T ss_dssp             CEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred             eEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            99999853    22  346899999999999 665543

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.40  E-value=9.9e-13  Score=120.86  Aligned_cols=125  Identities=17%  Similarity=0.191  Sum_probs=91.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ++++.+|||||||+|..+..++..+|+.+++++|++ .++.  +++++..++ ++|+++.+|+.+ +    .+ +||+|+
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~-~----~p-~~D~v~  252 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLR-E----VP-HADVHV  252 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTT-C----CC-CCSEEE
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCC-C----CC-CCcEEE
Confidence            345789999999999999999999999999999994 4433  333333333 369999999962 1    12 799999


Q ss_pred             EcCc----ccH--HHHHHHHccccccCeEEEEEEcC---C---cHH----------------HHHHHHHHHHHhCCeEeE
Q 022962          198 ARAV----AEM--RILAEYCLPLVRVGGLFVAAKGH---D---PQE----------------EVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       198 sn~~----~~~--~~ll~~~~~~LkpgG~l~~~~g~---~---~~~----------------ei~~~~~~l~~~g~~~~~  249 (289)
                      ++.+    .+.  ..+++++.++|||||++++....   .   ...                ...++.+.++++||+.++
T Consensus       253 ~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~  332 (348)
T 3lst_A          253 LKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDR  332 (348)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred             EehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEE
Confidence            8742    233  69999999999999999986421   1   000                124456778899999888


Q ss_pred             Eee
Q 022962          250 LCS  252 (289)
Q Consensus       250 ~~~  252 (289)
                      +..
T Consensus       333 ~~~  335 (348)
T 3lst_A          333 VVG  335 (348)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            863

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.40  E-value=1.8e-12  Score=120.22  Aligned_cols=121  Identities=15%  Similarity=0.157  Sum_probs=92.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .+..+|||||||+|.++..++..+|+.+++++|+ +.+++.+++      ..+++++.+|+.+ +.+    .. |+|+++
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~p----~~-D~v~~~  268 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA------FSGVEHLGGDMFD-GVP----KG-DAIFIK  268 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCC----CC-SEEEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh------cCCCEEEecCCCC-CCC----CC-CEEEEe
Confidence            3468999999999999999999999999999999 888776653      2479999999986 332    23 999987


Q ss_pred             Ccc------cHHHHHHHHccccccCeEEEEEEcC---C---c-HH------H--------------HHHHHHHHHHhCCe
Q 022962          200 AVA------EMRILAEYCLPLVRVGGLFVAAKGH---D---P-QE------E--------------VKNSERAVQLMGAS  246 (289)
Q Consensus       200 ~~~------~~~~ll~~~~~~LkpgG~l~~~~g~---~---~-~~------e--------------i~~~~~~l~~~g~~  246 (289)
                      .+-      +...++++++++|+|||++++....   .   . ..      +              ..++.+.++++||+
T Consensus       269 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~  348 (368)
T 3reo_A          269 WICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFR  348 (368)
T ss_dssp             SCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCC
T ss_pred             chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCe
Confidence            432      3458899999999999999886421   0   0 00      0              23456778899999


Q ss_pred             EeEEeee
Q 022962          247 LLQLCSV  253 (289)
Q Consensus       247 ~~~~~~~  253 (289)
                      .+++...
T Consensus       349 ~v~~~~~  355 (368)
T 3reo_A          349 GFKVASC  355 (368)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEEe
Confidence            9888755

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.40  E-value=1.1e-12  Score=117.92  Aligned_cols=109  Identities=13%  Similarity=0.167  Sum_probs=79.9

Q ss_pred             CCCeEEEEcCCC------ChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEE-EeccccccCCCCcCCCC
Q 022962          121 SNLKLVDVGTGA------GLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQI-VRGRAETLGKDVSFREQ  192 (289)
Q Consensus       121 ~~~~VLDiGcG~------G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~-~~~d~~~~~~~~~~~~~  192 (289)
                      ++.+|||+|||+      |.  ..++...+ +++|+|+|+|+.             ++++++ +++|+.+++.    .++
T Consensus        63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~----~~~  123 (290)
T 2xyq_A           63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHT----ANK  123 (290)
T ss_dssp             TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCC----SSC
T ss_pred             CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCc----cCc
Confidence            478999999965      55  44566666 689999999997             247888 9999988653    268


Q ss_pred             ceEEEEcCcc---------------cHHHHHHHHccccccCeEEEEEE-cCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          193 YDVAVARAVA---------------EMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       193 fD~V~sn~~~---------------~~~~ll~~~~~~LkpgG~l~~~~-g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      ||+|+||...               .++.+++.+.++|||||+|++.. .....++   +.+.++..||..+++.
T Consensus       124 fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~---l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          124 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNAD---LYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             EEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHH---HHHHHTTEEEEEEEEE
T ss_pred             ccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHH---HHHHHHHcCCcEEEEE
Confidence            9999998321               24589999999999999999854 2223334   3445667888765554

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.38  E-value=5.6e-13  Score=124.14  Aligned_cols=95  Identities=21%  Similarity=0.329  Sum_probs=75.8

Q ss_pred             CCCeEEEEcCC------CChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc---CC
Q 022962          121 SNLKLVDVGTG------AGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS---FR  190 (289)
Q Consensus       121 ~~~~VLDiGcG------~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~---~~  190 (289)
                      ++.+|||||||      +|..++.++.. +|+++|+|||+|++|.         ....+++++++|+.+++....   .+
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d  286 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY  286 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence            36799999999      77778887765 5899999999999972         123589999999998643200   02


Q ss_pred             CCceEEEEcCc---ccHHHHHHHHccccccCeEEEEE
Q 022962          191 EQYDVAVARAV---AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       191 ~~fD~V~sn~~---~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ++||+|++++.   .+....+++++++|||||++++.
T Consensus       287 ~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          287 GPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             CCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEE
Confidence            78999999853   45788999999999999999985

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.37  E-value=2.6e-12  Score=118.19  Aligned_cols=119  Identities=15%  Similarity=0.190  Sum_probs=92.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|..+..++..+|+.+++++|+ +.+++.+++      ..+++++.+|+.+ +.    + .||+|+++.
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~----p-~~D~v~~~~  254 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT-SI----P-NADAVLLKY  254 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT-CC----C-CCSEEEEES
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------CCCcEEEeccccC-CC----C-CccEEEeeh
Confidence            467999999999999999999999999999999 988877764      2469999999976 32    1 399999874


Q ss_pred             c----ccHH--HHHHHHcccccc---CeEEEEEEc---CCc-H----H-----------------HHHHHHHHHHHhCCe
Q 022962          201 V----AEMR--ILAEYCLPLVRV---GGLFVAAKG---HDP-Q----E-----------------EVKNSERAVQLMGAS  246 (289)
Q Consensus       201 ~----~~~~--~ll~~~~~~Lkp---gG~l~~~~g---~~~-~----~-----------------ei~~~~~~l~~~g~~  246 (289)
                      +    .+..  .+++++.++|||   ||++++...   ... .    .                 ...++.+.++++||.
T Consensus       255 ~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~  334 (352)
T 1fp2_A          255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQ  334 (352)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCC
T ss_pred             hhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCC
Confidence            2    3334  899999999999   999987642   111 0    0                 023556778899999


Q ss_pred             EeEEee
Q 022962          247 LLQLCS  252 (289)
Q Consensus       247 ~~~~~~  252 (289)
                      .+++..
T Consensus       335 ~~~~~~  340 (352)
T 1fp2_A          335 HYKISP  340 (352)
T ss_dssp             EEEEEE
T ss_pred             eeEEEe
Confidence            888764

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.36  E-value=2.7e-12  Score=119.01  Aligned_cols=121  Identities=20%  Similarity=0.213  Sum_probs=93.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .++.+|||||||+|..+..++..+|+.+++++|+ +.+++.+++      ..+++++.+|+.+ +.    +. ||+|+++
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~----~~-~D~v~~~  274 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-SV----PQ-GDAMILK  274 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CC----CC-EEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-CC----CC-CCEEEEe
Confidence            3478999999999999999999999999999999 888877654      2479999999976 33    23 9999997


Q ss_pred             Cc----ccHH--HHHHHHccccccCeEEEEEE---cCCc---H----H----------------HHHHHHHHHHHhCCeE
Q 022962          200 AV----AEMR--ILAEYCLPLVRVGGLFVAAK---GHDP---Q----E----------------EVKNSERAVQLMGASL  247 (289)
Q Consensus       200 ~~----~~~~--~ll~~~~~~LkpgG~l~~~~---g~~~---~----~----------------ei~~~~~~l~~~g~~~  247 (289)
                      .+    .+..  .+++++.++|+|||++++..   +...   .    .                ...++.+.++++||+.
T Consensus       275 ~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~  354 (372)
T 1fp1_D          275 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSK  354 (372)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSE
T ss_pred             cccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCce
Confidence            43    3334  89999999999999999763   1110   0    0                1234556778899998


Q ss_pred             eEEeee
Q 022962          248 LQLCSV  253 (289)
Q Consensus       248 ~~~~~~  253 (289)
                      +++..+
T Consensus       355 ~~~~~~  360 (372)
T 1fp1_D          355 FQVACR  360 (372)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            888754

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.36  E-value=4.3e-12  Score=118.81  Aligned_cols=108  Identities=11%  Similarity=0.050  Sum_probs=87.0

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCC--------------------------------------CEEEEEeCChHHHH
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPD--------------------------------------WKVTLLESMNKRCV  159 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~--------------------------------------~~V~~iD~s~~~l~  159 (289)
                      .+.++..|||.|||||.+++.+|....+                                      .+|+|+|+|+.|++
T Consensus       198 ~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~  277 (393)
T 3k0b_A          198 SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIE  277 (393)
T ss_dssp             CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred             CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHH
Confidence            3456789999999999999998865332                                      56999999999999


Q ss_pred             HHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcCc--------ccHHHHHHHHcccccc--CeEEEEEEcCC
Q 022962          160 FLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARAV--------AEMRILAEYCLPLVRV--GGLFVAAKGHD  228 (289)
Q Consensus       160 ~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~~--------~~~~~ll~~~~~~Lkp--gG~l~~~~g~~  228 (289)
                      .|++|++.+|+.+ ++++++|+.++...    .+||+|++|..        ..+..+.+.+.+.||+  ||.+++..+..
T Consensus       278 ~Ar~Na~~~gl~~~I~~~~~D~~~~~~~----~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  353 (393)
T 3k0b_A          278 IAKQNAVEAGLGDLITFRQLQVADFQTE----DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE  353 (393)
T ss_dssp             HHHHHHHHTTCTTCSEEEECCGGGCCCC----CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred             HHHHHHHHcCCCCceEEEECChHhCCCC----CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            9999999999864 99999999987642    58999999942        3455666666666665  99999988754


Q ss_pred             c
Q 022962          229 P  229 (289)
Q Consensus       229 ~  229 (289)
                      .
T Consensus       354 ~  354 (393)
T 3k0b_A          354 L  354 (393)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.35  E-value=4.9e-12  Score=117.17  Aligned_cols=121  Identities=16%  Similarity=0.115  Sum_probs=92.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .+..+|||||||+|..+..++..+|+.+++++|+ +.+++.+++      ..+++++.+|+.+ +.+    .. |+|++.
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~p----~~-D~v~~~  266 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK-EVP----SG-DTILMK  266 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCC----CC-SEEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC-CCC----CC-CEEEeh
Confidence            3468999999999999999999999999999999 877766653      2479999999987 432    23 999987


Q ss_pred             Cc------ccHHHHHHHHccccccCeEEEEEEcC--C----c-H------HH--------------HHHHHHHHHHhCCe
Q 022962          200 AV------AEMRILAEYCLPLVRVGGLFVAAKGH--D----P-Q------EE--------------VKNSERAVQLMGAS  246 (289)
Q Consensus       200 ~~------~~~~~ll~~~~~~LkpgG~l~~~~g~--~----~-~------~e--------------i~~~~~~l~~~g~~  246 (289)
                      .+      .+...++++++++|+|||++++....  .    . .      ..              ..++.+.++++||+
T Consensus       267 ~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~  346 (364)
T 3p9c_A          267 WILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFT  346 (364)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCC
T ss_pred             HHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCc
Confidence            42      23468999999999999999986421  1    0 0      00              13356678899999


Q ss_pred             EeEEeee
Q 022962          247 LLQLCSV  253 (289)
Q Consensus       247 ~~~~~~~  253 (289)
                      .+++...
T Consensus       347 ~v~~~~~  353 (364)
T 3p9c_A          347 GVKSTYI  353 (364)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEc
Confidence            9988755

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.35  E-value=5e-12  Score=118.53  Aligned_cols=134  Identities=11%  Similarity=0.018  Sum_probs=93.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||+|||+|.+++.+++.. +..+|+|+|+++.+++.|         .+++++++|+.+...    .++||+|++|.
T Consensus        40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~----~~~fD~Ii~NP  106 (421)
T 2ih2_A           40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEP----GEAFDLILGNP  106 (421)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCC----SSCEEEEEECC
T ss_pred             CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCc----cCCCCEEEECc
Confidence            5699999999999999998765 578999999999998766         479999999988643    36899999982


Q ss_pred             ------c---------cc------------------HHHHHHHHccccccCeEEEEEEcCCc--HHHHHHHHHHHHHhCC
Q 022962          201 ------V---------AE------------------MRILAEYCLPLVRVGGLFVAAKGHDP--QEEVKNSERAVQLMGA  245 (289)
Q Consensus       201 ------~---------~~------------------~~~ll~~~~~~LkpgG~l~~~~g~~~--~~ei~~~~~~l~~~g~  245 (289)
                            .         .+                  ...+++.+.++|+|||++++..+...  ......+.+.+.+.++
T Consensus       107 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~  186 (421)
T 2ih2_A          107 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK  186 (421)
T ss_dssp             CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred             CccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence                  1         11                  12678899999999999998875431  1112233445556665


Q ss_pred             eEeEEeeee--cCCCCCceEEEEEEec
Q 022962          246 SLLQLCSVE--SQSPFGQRTAVVCLKS  270 (289)
Q Consensus       246 ~~~~~~~~~--~~~~~~~r~lv~~~k~  270 (289)
                        ..+..+.  .+.......+++++|.
T Consensus       187 --~~i~~l~~~F~~~~~~~~il~~~k~  211 (421)
T 2ih2_A          187 --TSVYYLGEVFPQKKVSAVVIRFQKS  211 (421)
T ss_dssp             --EEEEEEESCSTTCCCCEEEEEEESS
T ss_pred             --eEEEECCCCCCCCCccEEEEEEEeC
Confidence              2222222  2233335566666664

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.35  E-value=7.5e-13  Score=129.59  Aligned_cols=100  Identities=15%  Similarity=0.110  Sum_probs=78.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||||||+|.++..||+.  +++|+|||+++.+++.|+..+.+.+.-+|++.+++++++... ..+++||+|+|..+
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~v~~~e~  143 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAA-LEEGEFDLAIGLSV  143 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHH-CCTTSCSEEEEESC
T ss_pred             CCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhh-ccCCCccEEEECcc
Confidence            579999999999999999976  789999999999999999999988865899999999987321 11368999999863


Q ss_pred             c----cHH--HHHHHHccccccCeEEEEE
Q 022962          202 A----EMR--ILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       202 ~----~~~--~ll~~~~~~LkpgG~l~~~  224 (289)
                      -    +..  ..+..+.+.|+++|..++.
T Consensus       144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~  172 (569)
T 4azs_A          144 FHHIVHLHGIDEVKRLLSRLADVTQAVIL  172 (569)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred             hhcCCCHHHHHHHHHHHHHhccccceeeE
Confidence            2    222  1223455667887776654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.34  E-value=7.8e-12  Score=116.68  Aligned_cols=108  Identities=10%  Similarity=0.034  Sum_probs=87.4

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCC--------------------------------------CEEEEEeCChHHHH
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPD--------------------------------------WKVTLLESMNKRCV  159 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~--------------------------------------~~V~~iD~s~~~l~  159 (289)
                      .+.++..++|.+||||.+++..|....+                                      .+|+|+|+|+.|++
T Consensus       191 ~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~  270 (384)
T 3ldg_A          191 NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVE  270 (384)
T ss_dssp             TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred             CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHH
Confidence            3456789999999999999998865332                                      56999999999999


Q ss_pred             HHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcCc--------ccHHHHHHHHcccccc--CeEEEEEEcCC
Q 022962          160 FLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARAV--------AEMRILAEYCLPLVRV--GGLFVAAKGHD  228 (289)
Q Consensus       160 ~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~~--------~~~~~ll~~~~~~Lkp--gG~l~~~~g~~  228 (289)
                      .|++|++.+|+.+ ++++++|+.++...    .+||+|++|..        .+...+.+.+.+.||+  ||.+++..+..
T Consensus       271 ~Ar~Na~~~gl~~~I~~~~~D~~~l~~~----~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  346 (384)
T 3ldg_A          271 IARKNAREVGLEDVVKLKQMRLQDFKTN----KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDT  346 (384)
T ss_dssp             HHHHHHHHTTCTTTEEEEECCGGGCCCC----CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCT
T ss_pred             HHHHHHHHcCCCCceEEEECChHHCCcc----CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCH
Confidence            9999999999875 99999999987643    58999999942        3456666666666665  99999988753


Q ss_pred             c
Q 022962          229 P  229 (289)
Q Consensus       229 ~  229 (289)
                      .
T Consensus       347 ~  347 (384)
T 3ldg_A          347 D  347 (384)
T ss_dssp             T
T ss_pred             H
Confidence            3

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.34  E-value=3.7e-13  Score=120.35  Aligned_cols=96  Identities=13%  Similarity=0.005  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH-cCCC-CEEEE--eccccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL-TQLL-NVQIV--RGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~-~~l~-ni~~~--~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ++.+|||||||+|.++..++..   .+|+|||+++ ++..++++... .... +++++  ++|+.+++     +++||+|
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-----~~~fD~V  152 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME-----PFQADTV  152 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-----CCCCSEE
T ss_pred             CCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-----CCCcCEE
Confidence            4789999999999999998865   6999999998 53332221000 0011 68999  99998875     2689999


Q ss_pred             EEcCc---cc-----H--HHHHHHHccccccCe--EEEEEE
Q 022962          197 VARAV---AE-----M--RILAEYCLPLVRVGG--LFVAAK  225 (289)
Q Consensus       197 ~sn~~---~~-----~--~~ll~~~~~~LkpgG--~l~~~~  225 (289)
                      +|+..   ..     .  ..+++.+.++|||||  .|++-.
T Consensus       153 vsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          153 LCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             EECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             EECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            99742   11     1  137889999999999  888743

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.33  E-value=2.3e-11  Score=110.31  Aligned_cols=106  Identities=8%  Similarity=-0.021  Sum_probs=84.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..++.+|||+|||+|..++.+|... +.++|+|+|+++.+++.+++|++++|++|++++++|+.++.......++||.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            3458899999999999999999764 568999999999999999999999999899999999988753211114799999


Q ss_pred             EcCcc---------------------c-------HHHHHHHHccccccCeEEEEEE
Q 022962          198 ARAVA---------------------E-------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       198 sn~~~---------------------~-------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +++..                     +       ...+++.+.++++ ||++++..
T Consensus       180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT  234 (309)
T 2b9e_A          180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST  234 (309)
T ss_dssp             ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred             EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence            86210                     1       1357888888887 99887654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.33  E-value=6.1e-12  Score=117.52  Aligned_cols=108  Identities=10%  Similarity=0.083  Sum_probs=87.5

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCC--------------------------------------CCEEEEEeCChHHHH
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACP--------------------------------------DWKVTLLESMNKRCV  159 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p--------------------------------------~~~V~~iD~s~~~l~  159 (289)
                      .+.++.+|||.|||||.+++.+|....                                      ..+|+|+|+|+.+++
T Consensus       192 ~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~  271 (385)
T 3ldu_A          192 PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESID  271 (385)
T ss_dssp             CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHH
T ss_pred             CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHH
Confidence            345678999999999999999886532                                      157999999999999


Q ss_pred             HHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcCc--------ccHHHHHHHHcccccc--CeEEEEEEcCC
Q 022962          160 FLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARAV--------AEMRILAEYCLPLVRV--GGLFVAAKGHD  228 (289)
Q Consensus       160 ~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~--------~~~~~ll~~~~~~Lkp--gG~l~~~~g~~  228 (289)
                      .|++|++.+|+. +|++.++|+.++..+    ++||+|++|..        .....+.+.+.+.||+  ||.+++..+..
T Consensus       272 ~Ar~Na~~~gl~~~i~~~~~D~~~l~~~----~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  347 (385)
T 3ldu_A          272 IARENAEIAGVDEYIEFNVGDATQFKSE----DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYE  347 (385)
T ss_dssp             HHHHHHHHHTCGGGEEEEECCGGGCCCS----CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred             HHHHHHHHcCCCCceEEEECChhhcCcC----CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence            999999999986 699999999987642    68999999942        2456677777677766  99999888754


Q ss_pred             c
Q 022962          229 P  229 (289)
Q Consensus       229 ~  229 (289)
                      .
T Consensus       348 ~  348 (385)
T 3ldu_A          348 D  348 (385)
T ss_dssp             T
T ss_pred             H
Confidence            3

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.31  E-value=9.3e-13  Score=119.33  Aligned_cols=113  Identities=15%  Similarity=0.021  Sum_probs=76.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeC----ChHHHHHHHHHHHHcCCCCEEEEec-cccccCCCCcCCCCce
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLES----MNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~----s~~~l~~a~~~~~~~~l~ni~~~~~-d~~~~~~~~~~~~~fD  194 (289)
                      +++.+|||||||+|.++..+|+.   .+|+|||+    ++.+++.+.  .+..+.++++++++ |+.+++.     ++||
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~~-----~~fD  150 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIPP-----ERCD  150 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSCC-----CCCS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCCc-----CCCC
Confidence            34789999999999999999865   58999999    554332111  12223357999999 8877642     6899


Q ss_pred             EEEEcCcc-------cHH---HHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHH
Q 022962          195 VAVARAVA-------EMR---ILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQL  242 (289)
Q Consensus       195 ~V~sn~~~-------~~~---~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~  242 (289)
                      +|+|+...       +..   .+++.+.++|||||.|++-.-.....+...+...++.
T Consensus       151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~  208 (305)
T 2p41_A          151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQR  208 (305)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred             EEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHH
Confidence            99997431       111   4788889999999999874433322333344444443

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.31  E-value=3.8e-12  Score=114.12  Aligned_cols=73  Identities=22%  Similarity=0.182  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.++++....+. ++++++++|+.+++.     .+||+|++|
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~-----~~fD~vv~n  100 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-----PFFDTCVAN  100 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-----CCCSEEEEE
T ss_pred             CCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc-----hhhcEEEEe
Confidence            4779999999999999999987  46999999999999999998877765 579999999988753     369999998


Q ss_pred             C
Q 022962          200 A  200 (289)
Q Consensus       200 ~  200 (289)
                      .
T Consensus       101 l  101 (285)
T 1zq9_A          101 L  101 (285)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.30  E-value=2.3e-11  Score=108.21  Aligned_cols=123  Identities=13%  Similarity=0.117  Sum_probs=84.9

Q ss_pred             CCeEEEEcCCC--ChHHHHHH-HHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---------CCcC
Q 022962          122 NLKLVDVGTGA--GLPGLVLA-IACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---------DVSF  189 (289)
Q Consensus       122 ~~~VLDiGcG~--G~~~l~la-~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---------~~~~  189 (289)
                      ..+|||||||+  |.....++ ...|+++|++||.|+.|++.|++.....+..+++++++|+.+...         ..++
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~  158 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDL  158 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCc
Confidence            35899999997  32334444 457999999999999999999987765444479999999988521         0112


Q ss_pred             CCCceEEEEcCc----cc---HHHHHHHHccccccCeEEEEEEcC-C-cHHHHHHHHHHHHHhCC
Q 022962          190 REQYDVAVARAV----AE---MRILAEYCLPLVRVGGLFVAAKGH-D-PQEEVKNSERAVQLMGA  245 (289)
Q Consensus       190 ~~~fD~V~sn~~----~~---~~~ll~~~~~~LkpgG~l~~~~g~-~-~~~ei~~~~~~l~~~g~  245 (289)
                      ++++ .|++|++    .+   ...+++.+.+.|+|||+|++.... + ..++...+.+.++..|.
T Consensus       159 ~~p~-av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~  222 (277)
T 3giw_A          159 TRPV-ALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNM  222 (277)
T ss_dssp             TSCC-EEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTC
T ss_pred             CCcc-hHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCC
Confidence            2333 4777753    23   568999999999999999987542 2 23444445555555554

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.30  E-value=1.3e-11  Score=113.70  Aligned_cols=119  Identities=17%  Similarity=0.148  Sum_probs=91.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +..+|||||||+|..+..++..+|+.+++++|+ +.+++.+++      ..+++++.+|+.+ +.     ..||+|+++.
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~-----~~~D~v~~~~  259 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SI-----PSADAVLLKW  259 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CC-----CCCSEEEEES
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CC-----CCceEEEEcc
Confidence            367999999999999999999999999999999 677766553      3469999999986 33     2499999984


Q ss_pred             c----cc--HHHHHHHHcccccc---CeEEEEEEc---CCcH-------H----------------HHHHHHHHHHHhCC
Q 022962          201 V----AE--MRILAEYCLPLVRV---GGLFVAAKG---HDPQ-------E----------------EVKNSERAVQLMGA  245 (289)
Q Consensus       201 ~----~~--~~~ll~~~~~~Lkp---gG~l~~~~g---~~~~-------~----------------ei~~~~~~l~~~g~  245 (289)
                      +    .+  ...+++++.++|+|   ||++++...   ....       .                ...++.+.++++||
T Consensus       260 vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf  339 (358)
T 1zg3_A          260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGF  339 (358)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTC
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCC
Confidence            3    33  34999999999999   999987542   1110       0                12345567788999


Q ss_pred             eEeEEee
Q 022962          246 SLLQLCS  252 (289)
Q Consensus       246 ~~~~~~~  252 (289)
                      +.+++..
T Consensus       340 ~~~~~~~  346 (358)
T 1zg3_A          340 SSYKITP  346 (358)
T ss_dssp             CEEEEEE
T ss_pred             CeeEEEe
Confidence            9888764

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.30  E-value=2.4e-12  Score=113.12  Aligned_cols=96  Identities=10%  Similarity=-0.057  Sum_probs=80.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      ..+|||||||+|.+++.++...|..+|+|+|+|+.+++++++++..+|+. .++...|...-..    .++||+|+++-.
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~~p----~~~~DvaL~lkt  207 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLEDRL----DEPADVTLLLKT  207 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTSCC----CSCCSEEEETTC
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecccCC----CCCcchHHHHHH
Confidence            66999999999999999988889999999999999999999999999985 8888888765433    378999999842


Q ss_pred             cc------HHHHHHHHccccccCeEEEE
Q 022962          202 AE------MRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       202 ~~------~~~ll~~~~~~LkpgG~l~~  223 (289)
                      .+      ....+ .+...|+++|.++-
T Consensus       208 i~~Le~q~kg~g~-~ll~aL~~~~vvVS  234 (281)
T 3lcv_B          208 LPCLETQQRGSGW-EVIDIVNSPNIVVT  234 (281)
T ss_dssp             HHHHHHHSTTHHH-HHHHHSSCSEEEEE
T ss_pred             HHHhhhhhhHHHH-HHHHHhCCCCEEEe
Confidence            21      12444 67889999999884

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.29  E-value=1e-12  Score=116.77  Aligned_cols=95  Identities=19%  Similarity=0.034  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHH---HHcCCCCEEEE--eccccccCCCCcCCCCceE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAV---SLTQLLNVQIV--RGRAETLGKDVSFREQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~---~~~~l~ni~~~--~~d~~~~~~~~~~~~~fD~  195 (289)
                      ++.+|||||||+|.++..++..   .+|+|||+++ ++..+++..   +..+. ++.++  ++|+.+++     +++||+
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~-~v~~~~~~~D~~~l~-----~~~fD~  143 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGW-NIVKFKSRVDIHTLP-----VERTDV  143 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTG-GGEEEECSCCTTTSC-----CCCCSE
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCC-CeEEEecccCHhHCC-----CCCCcE
Confidence            4789999999999999998865   6999999998 432222110   01111 68999  89998875     268999


Q ss_pred             EEEcCc---cc----HH---HHHHHHccccccCe--EEEEEE
Q 022962          196 AVARAV---AE----MR---ILAEYCLPLVRVGG--LFVAAK  225 (289)
Q Consensus       196 V~sn~~---~~----~~---~ll~~~~~~LkpgG--~l~~~~  225 (289)
                      |+|+..   ..    ..   .+++.+.++|||||  .|++-.
T Consensus       144 V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          144 IMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             EEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            999732   11    11   37889999999999  888743

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.29  E-value=5e-12  Score=114.14  Aligned_cols=73  Identities=18%  Similarity=0.175  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.++++++..+.+|++++++|+.+++.     .+||+|++|.
T Consensus        42 ~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~-----~~~D~Vv~n~  114 (299)
T 2h1r_A           42 SSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF-----PKFDVCTANI  114 (299)
T ss_dssp             TTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC-----CCCSEEEEEC
T ss_pred             CcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc-----ccCCEEEEcC
Confidence            4779999999999999999865  57999999999999999999988888889999999988753     4799999984

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.25  E-value=6.2e-12  Score=103.90  Aligned_cols=113  Identities=10%  Similarity=0.072  Sum_probs=82.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +.++.+|||||||+                +++|+|+.|++.|+++...    +++++++|+++++.....+++||+|++
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~V~~   69 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDIILS   69 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEEEEE
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeEEEE
Confidence            45689999999996                2499999999999886432    589999999987641001478999999


Q ss_pred             cC----c-ccHHHHHHHHccccccCeEEEEEEcCC-------cHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          199 RA----V-AEMRILAEYCLPLVRVGGLFVAAKGHD-------PQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       199 n~----~-~~~~~ll~~~~~~LkpgG~l~~~~g~~-------~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      +.    + .+...++++++++|||||+|++.....       ......++.+.++.+|| +. +...
T Consensus        70 ~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~-~~~~  134 (176)
T 2ld4_A           70 GLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE-VKEL  134 (176)
T ss_dssp             CCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE-EEEE
T ss_pred             CChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE-eecC
Confidence            73    3 577999999999999999999864310       11113455667789999 44 4433

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.23  E-value=3.6e-11  Score=104.68  Aligned_cols=95  Identities=9%  Similarity=-0.056  Sum_probs=76.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      .+.+|||||||+|.+++.++   +..+++|+|+|+.+++++++++..++. +.++..+|....+.    .++||+|+++-
T Consensus       105 ~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~~~~----~~~~DvvLllk  176 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDVLCAPP----AEAGDLALIFK  176 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCTTTSCC----CCBCSEEEEES
T ss_pred             CCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeecccCCC----CCCcchHHHHH
Confidence            36799999999999888876   789999999999999999999998885 68899999876554    36899999983


Q ss_pred             cc------cHHHHHHHHccccccCeEEEEE
Q 022962          201 VA------EMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       201 ~~------~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..      .....+ .+...|+++|.++-.
T Consensus       177 ~lh~LE~q~~~~~~-~ll~aL~~~~vvVsf  205 (253)
T 3frh_A          177 LLPLLEREQAGSAM-ALLQSLNTPRMAVSF  205 (253)
T ss_dssp             CHHHHHHHSTTHHH-HHHHHCBCSEEEEEE
T ss_pred             HHHHhhhhchhhHH-HHHHHhcCCCEEEEc
Confidence            21      112233 556689999998843

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.16  E-value=8.4e-11  Score=105.91  Aligned_cols=73  Identities=21%  Similarity=0.267  Sum_probs=63.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..  +.+|+|||+|+.+++.++++...  ..|++++++|+.+++..   +.+||.|++|.
T Consensus        50 ~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~--~~~v~vi~gD~l~~~~~---~~~fD~Iv~Nl  122 (295)
T 3gru_A           50 KDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL--YNNIEIIWGDALKVDLN---KLDFNKVVANL  122 (295)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH--CSSEEEEESCTTTSCGG---GSCCSEEEEEC
T ss_pred             CcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc--CCCeEEEECchhhCCcc---cCCccEEEEeC
Confidence            4789999999999999999987  67999999999999999998873  45899999999987653   24799999994

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.15  E-value=6.7e-10  Score=97.99  Aligned_cols=75  Identities=19%  Similarity=0.161  Sum_probs=62.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC-CCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~-~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.++++...  ..+++++++|+.+++....+ +++|| |++|
T Consensus        29 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~N  103 (255)
T 3tqs_A           29 KTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSVKTDKPLR-VVGN  103 (255)
T ss_dssp             TTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGSCCSSCEE-EEEE
T ss_pred             CcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHhccCCCeE-EEec
Confidence            4789999999999999999875  47999999999999999998765  35899999999988653211 35788 8888


Q ss_pred             C
Q 022962          200 A  200 (289)
Q Consensus       200 ~  200 (289)
                      -
T Consensus       104 l  104 (255)
T 3tqs_A          104 L  104 (255)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.13  E-value=7.3e-11  Score=106.61  Aligned_cols=79  Identities=11%  Similarity=0.111  Sum_probs=67.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC-CCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF-REQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~-~~~fD~V~s  198 (289)
                      ++.+|||+|||+|..++.++...|+++|+|+|+|+.|++.|+++++.++ .+++++++|+.+++... .. .++||.|++
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~  104 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLGIEKVDGILM  104 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTTCSCEEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhcCCCCCCEEEE
Confidence            4789999999999999999998888899999999999999999998887 68999999998864210 00 147999998


Q ss_pred             cC
Q 022962          199 RA  200 (289)
Q Consensus       199 n~  200 (289)
                      +.
T Consensus       105 D~  106 (301)
T 1m6y_A          105 DL  106 (301)
T ss_dssp             EC
T ss_pred             cC
Confidence            74

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.10  E-value=1.3e-10  Score=110.30  Aligned_cols=102  Identities=13%  Similarity=0.020  Sum_probs=82.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-------------CCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-------------PDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGK  185 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-------------p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~  185 (289)
                      ++.+|||.|||||.+.+.++...             +..+++|+|+++.+++.|+.|....|+.  ++.++++|......
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            46799999999999988887642             3468999999999999999999888875  67889999876543


Q ss_pred             CCcCCCCceEEEEcCc-c-----c---------------HHHHHHHHccccccCeEEEEEEc
Q 022962          186 DVSFREQYDVAVARAV-A-----E---------------MRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       186 ~~~~~~~fD~V~sn~~-~-----~---------------~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                          ..+||+|++|.. .     .               ...+++.+.+.|+|||++.+..+
T Consensus       251 ----~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          251 ----STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             ----SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence                248999999941 0     0               13788999999999999988764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.09  E-value=4e-10  Score=112.75  Aligned_cols=108  Identities=10%  Similarity=0.006  Sum_probs=84.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC------------------------------------------CCCEEEEEeCChH
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC------------------------------------------PDWKVTLLESMNK  156 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~------------------------------------------p~~~V~~iD~s~~  156 (289)
                      +.++..|||.+||||.+++.+|...                                          +..+|+|+|+|+.
T Consensus       188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~  267 (703)
T 3v97_A          188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR  267 (703)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred             CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence            4457899999999999999988641                                          2358999999999


Q ss_pred             HHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcCc--------ccHHHHHHHHcccc---ccCeEEEEE
Q 022962          157 RCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARAV--------AEMRILAEYCLPLV---RVGGLFVAA  224 (289)
Q Consensus       157 ~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~~--------~~~~~ll~~~~~~L---kpgG~l~~~  224 (289)
                      +++.|+.|++..|+.+ |++.++|+.++..+. ..++||+|++|..        .+...+.+.+.+.|   .|||.+++.
T Consensus       268 av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~-~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~il  346 (703)
T 3v97_A          268 VIQRARTNARLAGIGELITFEVKDVAQLTNPL-PKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLF  346 (703)
T ss_dssp             HHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC-TTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHHHHHcCCCCceEEEECChhhCcccc-ccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence            9999999999999976 999999999874321 1237999999941        23455555554444   479999998


Q ss_pred             EcC
Q 022962          225 KGH  227 (289)
Q Consensus       225 ~g~  227 (289)
                      .+.
T Consensus       347 t~~  349 (703)
T 3v97_A          347 SAS  349 (703)
T ss_dssp             ESC
T ss_pred             eCC
Confidence            875

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.08  E-value=1.6e-10  Score=108.31  Aligned_cols=75  Identities=19%  Similarity=0.145  Sum_probs=64.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc--CCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~--~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +.+|||+|||+|..++.+|..  +.+|+|||+|+.+++.|++|++.+  |+++++++++|+.++... ..+++||+|+++
T Consensus        94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~~~~~fDvV~lD  170 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-IKTFHPDYIYVD  170 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-HHHHCCSEEEEC
T ss_pred             CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-ccCCCceEEEEC
Confidence            789999999999999998865  579999999999999999999998  888899999999875211 002479999998

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.06  E-value=4.9e-11  Score=105.47  Aligned_cols=77  Identities=16%  Similarity=0.093  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCh-------HHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCC--C
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMN-------KRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFR--E  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~-------~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~--~  191 (289)
                      +.+|||+|||+|..++.+|..  +++|+|+|+|+       .+++.|++|++.+++.+ ++++++|++++... ..+  +
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~-~~~~~~  160 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPA-LVKTQG  160 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHH-HHHHHC
T ss_pred             cCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHh-hhccCC
Confidence            679999999999999999975  57999999999       99999999988888755 99999999885221 001  5


Q ss_pred             CceEEEEcCc
Q 022962          192 QYDVAVARAV  201 (289)
Q Consensus       192 ~fD~V~sn~~  201 (289)
                      +||+|+++..
T Consensus       161 ~fD~V~~dP~  170 (258)
T 2r6z_A          161 KPDIVYLDPM  170 (258)
T ss_dssp             CCSEEEECCC
T ss_pred             CccEEEECCC
Confidence            7999999863

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.06  E-value=1.1e-09  Score=96.72  Aligned_cols=138  Identities=17%  Similarity=0.146  Sum_probs=94.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHH-------CCC-----CEEEEEeCCh---HHHH-----------HHHHHHHH--------
Q 022962          122 NLKLVDVGTGAGLPGLVLAIA-------CPD-----WKVTLLESMN---KRCV-----------FLEHAVSL--------  167 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~-------~p~-----~~V~~iD~s~---~~l~-----------~a~~~~~~--------  167 (289)
                      +.+|||+|||+|...+.++..       .|.     .+|+++|..+   +.+.           .++++.+.        
T Consensus        61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~  140 (257)
T 2qy6_A           61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  140 (257)
T ss_dssp             EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence            569999999999998887654       563     5899999887   4433           55665553        


Q ss_pred             ----c--CCCCEEEEecccccc-CCCCc-CCCCceEEEEcCccc-------HHHHHHHHccccccCeEEEEEEcCCcHHH
Q 022962          168 ----T--QLLNVQIVRGRAETL-GKDVS-FREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEE  232 (289)
Q Consensus       168 ----~--~l~ni~~~~~d~~~~-~~~~~-~~~~fD~V~sn~~~~-------~~~ll~~~~~~LkpgG~l~~~~g~~~~~e  232 (289)
                          +  +..+++++.+|+.+. +.... ....||+|+..++++       ...+++.+.++|+|||+|+.+...   ..
T Consensus       141 ~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa---~~  217 (257)
T 2qy6_A          141 HRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA---GF  217 (257)
T ss_dssp             EEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCB---HH
T ss_pred             hheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCC---HH
Confidence                1  223688999999884 32110 012799999986432       368999999999999999864432   22


Q ss_pred             HHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962          233 VKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  270 (289)
Q Consensus       233 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~  270 (289)
                         +.+.+...||.+.+..     ...+.|.++...+.
T Consensus       218 ---vrr~L~~aGF~v~~~~-----g~~~kr~m~~a~~~  247 (257)
T 2qy6_A          218 ---VRRGLQEAGFTMQKRK-----GFGRKREMLCGVME  247 (257)
T ss_dssp             ---HHHHHHHHTEEEEEEC-----CSTTCCCEEEEEEC
T ss_pred             ---HHHHHHHCCCEEEeCC-----CCCCCCceEEEEec
Confidence               3456778999876553     44456666666654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.05  E-value=6.6e-12  Score=109.85  Aligned_cols=73  Identities=16%  Similarity=0.144  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.++++++  +..+++++++|+.+++...  +++| .|++|.
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~--~~~f-~vv~n~  101 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPN--KQRY-KIVGNI  101 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCC--SSEE-EEEEEC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCccc--CCCc-EEEEeC
Confidence            4779999999999999999987  3799999999999999988765  3357999999999876421  2578 788883

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.03  E-value=3.1e-09  Score=92.88  Aligned_cols=73  Identities=21%  Similarity=0.226  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++...  .+|+|+|+|+.+++.++++...  .++++++++|+.+++...  ...| .|++|.
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~~--~~~~-~vv~nl  102 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK--NQSY-KIFGNI  102 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS--SCCC-EEEEEC
T ss_pred             CCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCccc--CCCe-EEEEeC
Confidence            47899999999999999999873  7999999999999999988754  358999999999876431  2346 577773

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.03  E-value=9.4e-10  Score=97.87  Aligned_cols=72  Identities=26%  Similarity=0.175  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++ +|||||||+|.++..++..  +.+|+|+|+|+.+++.++++...   .|++++++|+.+++.+.  ...||.|++|-
T Consensus        47 ~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~--~~~~~~iv~Nl  118 (271)
T 3fut_A           47 TG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEE--VPQGSLLVANL  118 (271)
T ss_dssp             CS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGG--SCTTEEEEEEE
T ss_pred             CC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhh--ccCccEEEecC
Confidence            47 9999999999999999976  47999999999999999987652   48999999999876531  12689999993

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=99.02  E-value=6.1e-10  Score=109.49  Aligned_cols=96  Identities=15%  Similarity=0.083  Sum_probs=74.7

Q ss_pred             CCeEEEEcCCCChHHHHH---HHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVL---AIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~l---a~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ...|||||||+|.++...   +... -..+|+|||.|+ ++..+++..+.++.++ |+++++|++++..+    +++|+|
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP----EKVDII  432 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP----EKADII  432 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS----SCEEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC----cccCEE
Confidence            457999999999994443   3332 124799999997 5667888888888864 99999999998653    799999


Q ss_pred             EEcCc------ccHHHHHHHHccccccCeEEE
Q 022962          197 VARAV------AEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       197 ~sn~~------~~~~~ll~~~~~~LkpgG~l~  222 (289)
                      ||--+      +.+...+....++|||||.++
T Consensus       433 VSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          433 VSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             ECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            99621      234567888899999999987

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.01  E-value=1.3e-08  Score=91.15  Aligned_cols=146  Identities=17%  Similarity=0.132  Sum_probs=108.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH-----cCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL-----TQLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~-----~~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ..+||=||-|.|..+..+++..+..+|+.||+++..++.+++....     +.-.+++++.+|...+-..  ..++||+|
T Consensus        84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~--~~~~yDvI  161 (294)
T 3o4f_A           84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ--TSQTFDVI  161 (294)
T ss_dssp             CCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC--SSCCEEEE
T ss_pred             CCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh--ccccCCEE
Confidence            6799999999999988888665668999999999999999986543     2224799999999887543  35789999


Q ss_pred             EEcCcc--------cHHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCC-CCceEEE
Q 022962          197 VARAVA--------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSP-FGQRTAV  265 (289)
Q Consensus       197 ~sn~~~--------~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~-~~~r~lv  265 (289)
                      +.....        --.++++.+++.|+|||.++.-.+.  ...+.+..+.+.+++. |..+.......|.- .|.+..+
T Consensus       162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~-F~~v~~~~~~vPty~~g~w~f~  240 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHY-FSDVGFYQAAIPTYYGGIMTFA  240 (294)
T ss_dssp             EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHH-CSEEEEEEECCTTSSSSCEEEE
T ss_pred             EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhh-CCceeeeeeeeccCCCcceehe
Confidence            987422        1268999999999999999976542  3456667777777776 44455544444543 4666677


Q ss_pred             EEEec
Q 022962          266 VCLKS  270 (289)
Q Consensus       266 ~~~k~  270 (289)
                      ++.|.
T Consensus       241 ~as~~  245 (294)
T 3o4f_A          241 WATDN  245 (294)
T ss_dssp             EEESC
T ss_pred             eEECC
Confidence            76654

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.01  E-value=4e-09  Score=92.65  Aligned_cols=73  Identities=18%  Similarity=0.105  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++.. +..+|+|||+|+.+++.++++    ...|++++++|+.+++....+ +.| .|++|-
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~~~-~~~-~vv~Nl  103 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCSLG-KEL-KVVGNL  103 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGGSC-SSE-EEEEEC
T ss_pred             CcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhHcc-CCc-EEEEEC
Confidence            3779999999999999999865 458999999999999999886    234899999999988654221 234 788884

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.98  E-value=3.5e-09  Score=90.03  Aligned_cols=98  Identities=15%  Similarity=0.013  Sum_probs=76.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC---CCEEEEecccccc---------------
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL---LNVQIVRGRAETL---------------  183 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l---~ni~~~~~d~~~~---------------  183 (289)
                      ..+||++||  |+.++.+|+. ++++|+.||.+++..+.++++.+..|+   ++|+++.+|+.+.               
T Consensus        31 a~~VLEiGt--GySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           31 AEVILEYGS--GGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             CSEEEEESC--SHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCEEEEECc--hHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            579999998  4788888874 478999999999999999999999985   4799999997542               


Q ss_pred             CC------CCcCCCCceEEEEcCcccHHHHHHHHccccccCeEEEE
Q 022962          184 GK------DVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       184 ~~------~~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      +.      .....++||+|+..+-.. ...+..+.+.|+|||.+++
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~k~-~~~~~~~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGRFR-VGCALATAFSITRPVTLLF  152 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSSSH-HHHHHHHHHHCSSCEEEEE
T ss_pred             HHHhhhhhccccCCCCCEEEEeCCCc-hhHHHHHHHhcCCCeEEEE
Confidence            10      000126899999997433 3555567789999999865

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.97  E-value=2.5e-09  Score=95.48  Aligned_cols=76  Identities=14%  Similarity=0.037  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCC-C--CceE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFR-E--QYDV  195 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~--~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~-~--~fD~  195 (289)
                      ++.+|||||||+|.++..++...+.  .+|+|+|+|+.+++.++++.    ..+++++++|+.+++.+..++ .  ..+.
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~~~~~~~~~~~~~~  117 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDFGSIARPGDEPSLR  117 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCGGGGSCSSSSCCEE
T ss_pred             CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCChhHhcccccCCceE
Confidence            4789999999999999999987432  45999999999999999983    347999999999886542221 1  3467


Q ss_pred             EEEcC
Q 022962          196 AVARA  200 (289)
Q Consensus       196 V~sn~  200 (289)
                      |++|-
T Consensus       118 vv~Nl  122 (279)
T 3uzu_A          118 IIGNL  122 (279)
T ss_dssp             EEEEC
T ss_pred             EEEcc
Confidence            88884

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.94  E-value=6e-09  Score=91.72  Aligned_cols=76  Identities=14%  Similarity=-0.025  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC--CCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF--REQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~--~~~fD~V~s  198 (289)
                      ++.+|||||||+|.++. ++. .+..+|+|+|+|+.+++.++++....  .|++++++|+.+++....+  .+..|.|++
T Consensus        21 ~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~~~~~~~~~vvs   96 (252)
T 1qyr_A           21 KGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAEKMGQPLRVFG   96 (252)
T ss_dssp             TTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHHHHTSCEEEEE
T ss_pred             CcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhhcccCCceEEEE
Confidence            47799999999999999 654 33233999999999999999876543  4799999999987543111  124589999


Q ss_pred             cC
Q 022962          199 RA  200 (289)
Q Consensus       199 n~  200 (289)
                      |.
T Consensus        97 Nl   98 (252)
T 1qyr_A           97 NL   98 (252)
T ss_dssp             EC
T ss_pred             CC
Confidence            94

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.93  E-value=2.9e-09  Score=103.49  Aligned_cols=104  Identities=9%  Similarity=-0.049  Sum_probs=81.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC------------------CCEEEEEeCChHHHHHHHHHHHHcCCCC-----EEEEe
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP------------------DWKVTLLESMNKRCVFLEHAVSLTQLLN-----VQIVR  177 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p------------------~~~V~~iD~s~~~l~~a~~~~~~~~l~n-----i~~~~  177 (289)
                      ++.+|+|.|||||.+.+.++....                  ...++|+|+++.++..|+.|+...|+.+     +.+++
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~  248 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  248 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence            467999999999999888775421                  2479999999999999999998888765     78889


Q ss_pred             ccccccCCCCcCCCCceEEEEcCc-c-----------------cHHHHHHHHccccccCeEEEEEEc
Q 022962          178 GRAETLGKDVSFREQYDVAVARAV-A-----------------EMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       178 ~d~~~~~~~~~~~~~fD~V~sn~~-~-----------------~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      +|.......  ...+||+|++|+. .                 ....+++.+.+.|+|||++.++.+
T Consensus       249 gDtL~~~~~--~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          249 GNTLGSDGE--NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             SCTTSHHHH--TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCcccccc--cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence            987654211  1267999999941 0                 123688999999999999998764

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.90  E-value=5.1e-09  Score=96.65  Aligned_cols=106  Identities=14%  Similarity=0.059  Sum_probs=86.1

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC------CCEEEEeccccccCCCCcCCC
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL------LNVQIVRGRAETLGKDVSFRE  191 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l------~ni~~~~~d~~~~~~~~~~~~  191 (289)
                      +.++|.+|||+|+|.|.=++.+|...+...|+|+|+|+..+..+++++++++.      .++.+.+.|...+...  ..+
T Consensus       145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~--~~~  222 (359)
T 4fzv_A          145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL--EGD  222 (359)
T ss_dssp             CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH--STT
T ss_pred             CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh--ccc
Confidence            35678999999999999999998876677899999999999999999998875      3688888898776431  246


Q ss_pred             CceEEEEcCc---------------------------cc-HHHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV---------------------------AE-MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~---------------------------~~-~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .||.|+..+.                           .. -..+|..+.++|||||+++...
T Consensus       223 ~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT  284 (359)
T 4fzv_A          223 TYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST  284 (359)
T ss_dssp             CEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence            8999998621                           01 2578899999999999998654

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.90  E-value=3e-09  Score=104.83  Aligned_cols=100  Identities=15%  Similarity=0.073  Sum_probs=73.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHH----C---------CCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIA----C---------PDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKD-  186 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~----~---------p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~-  186 (289)
                      +..|||||||+|.++...+++    .         ...+|+|||.|+.++..++.... ++.++ |+++++|++++..+ 
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            458999999999997532221    1         23599999999988776666554 67655 99999999998541 


Q ss_pred             -CcCCCCceEEEEcCc------ccHHHHHHHHccccccCeEEE
Q 022962          187 -VSFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       187 -~~~~~~fD~V~sn~~------~~~~~ll~~~~~~LkpgG~l~  222 (289)
                       ....+++|+|||--+      +-.++.+..+.++|||||.++
T Consensus       489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence             001378999999732      134578888899999999987

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.88  E-value=1.2e-08  Score=102.02  Aligned_cols=106  Identities=12%  Similarity=0.031  Sum_probs=78.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC---CCEEEEEeCChHHHHHH--HHHHHH----cCCCCEEEEeccccccCCCCcCCC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP---DWKVTLLESMNKRCVFL--EHAVSL----TQLLNVQIVRGRAETLGKDVSFRE  191 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p---~~~V~~iD~s~~~l~~a--~~~~~~----~~l~ni~~~~~d~~~~~~~~~~~~  191 (289)
                      ++.+|||.|||+|.+.+.++...+   ..+++|+|+++.+++.|  +.++..    .+..+..+...|..+...  ....
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~--~~~~  398 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNP--EDFA  398 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCG--GGGT
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccc--cccC
Confidence            478999999999999999887664   35899999999999999  665544    233334566666665322  1236


Q ss_pred             CceEEEEcCc-----------c----------------------cHHHHHHHHccccccCeEEEEEEcCC
Q 022962          192 QYDVAVARAV-----------A----------------------EMRILAEYCLPLVRVGGLFVAAKGHD  228 (289)
Q Consensus       192 ~fD~V~sn~~-----------~----------------------~~~~ll~~~~~~LkpgG~l~~~~g~~  228 (289)
                      +||+|++|..           .                      -...+++.+.+.|++||++.+..+..
T Consensus       399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred             CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence            8999999931           0                      03357888999999999999887653

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.87  E-value=4e-08  Score=95.37  Aligned_cols=150  Identities=11%  Similarity=0.005  Sum_probs=100.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC---CCCEEEEEeCChHHHHHHHHHHHHcCC--CCEEEEeccccccCCCCcCCCCceE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKRCVFLEHAVSLTQL--LNVQIVRGRAETLGKDVSFREQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~---p~~~V~~iD~s~~~l~~a~~~~~~~~l--~ni~~~~~d~~~~~~~~~~~~~fD~  195 (289)
                      ++.+|+|.|||||.+.+.++...   +...++|+|+++.++..|+.|....|+  +++.+.++|......+.....+||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            47799999999999988887764   357999999999999999999988888  4689999998765211012368999


Q ss_pred             EEEcCc------------cc-----H----------HHHHHHHccccc-cCeEEEEEEcCCcH---HHHHHHHHHHHHhC
Q 022962          196 AVARAV------------AE-----M----------RILAEYCLPLVR-VGGLFVAAKGHDPQ---EEVKNSERAVQLMG  244 (289)
Q Consensus       196 V~sn~~------------~~-----~----------~~ll~~~~~~Lk-pgG~l~~~~g~~~~---~ei~~~~~~l~~~g  244 (289)
                      |++|+.            .+     +          -.+++.+.+.|+ +||++.++.+....   ..-..+.+.+-+.+
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~  380 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEG  380 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTT
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhCC
Confidence            999930            00     0          147899999999 99999887654321   11123334444444


Q ss_pred             CeEeEEeeeec---CCCCCceEEEEEEecC
Q 022962          245 ASLLQLCSVES---QSPFGQRTAVVCLKSR  271 (289)
Q Consensus       245 ~~~~~~~~~~~---~~~~~~r~lv~~~k~~  271 (289)
                      . +..+..+..   ....-.-.+++++|.+
T Consensus       381 ~-l~~II~LP~~lF~~t~i~t~Ilvl~K~k  409 (542)
T 3lkd_A          381 A-IDTVIGLPANIFFNTSIPTTVIILKKNR  409 (542)
T ss_dssp             C-EEEEEECCSSCSSSCCCCEEEEEECSSC
T ss_pred             c-eeEEEEccccccCCCCCcEEEEEEecCC
Confidence            3 444443321   1111234566666654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.83  E-value=3.6e-09  Score=93.41  Aligned_cols=93  Identities=18%  Similarity=0.194  Sum_probs=66.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc-------C-C-CCEEEEeccccccCCCCcCCCCc
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------Q-L-LNVQIVRGRAETLGKDVSFREQY  193 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-------~-l-~ni~~~~~d~~~~~~~~~~~~~f  193 (289)
                      .+|||+|||+|..++.+|..  +++|++||+++.+++.++++.+..       + + ++++++++|..++...  ..++|
T Consensus        90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~--~~~~f  165 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD--ITPRP  165 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT--CSSCC
T ss_pred             CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh--CcccC
Confidence            79999999999999999987  568999999999888888876543       2 3 4699999999886332  22479


Q ss_pred             eEEEEcCcc---cHHHHHHHHccccccCe
Q 022962          194 DVAVARAVA---EMRILAEYCLPLVRVGG  219 (289)
Q Consensus       194 D~V~sn~~~---~~~~ll~~~~~~LkpgG  219 (289)
                      |+|+++..-   .-...+++..+.|++.+
T Consensus       166 DvV~lDP~y~~~~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          166 QVVYLDPMFPHKQKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             SEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred             CEEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence            999998521   11234455556666544

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.78  E-value=1.7e-08  Score=98.11  Aligned_cols=147  Identities=7%  Similarity=-0.073  Sum_probs=95.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHCC---------------CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCC
Q 022962          123 LKLVDVGTGAGLPGLVLAIACP---------------DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD  186 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p---------------~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~  186 (289)
                      .+|+|.|||||.+.+.++....               ...++|+|+++.++..|+.|....|++ ++.+.++|....+..
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~  325 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH  325 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence            4999999999998877654321               468999999999999999999888875 344477776544321


Q ss_pred             CcCCCCceEEEEcC---cc---------c---------------------HHHHHHHHccccccCeEEEEEEcCCcH---
Q 022962          187 VSFREQYDVAVARA---VA---------E---------------------MRILAEYCLPLVRVGGLFVAAKGHDPQ---  230 (289)
Q Consensus       187 ~~~~~~fD~V~sn~---~~---------~---------------------~~~ll~~~~~~LkpgG~l~~~~g~~~~---  230 (289)
                        ...+||+|++|+   ..         +                     --.+++.+.+.|+|||++.++.+....   
T Consensus       326 --~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~  403 (544)
T 3khk_A          326 --PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSN  403 (544)
T ss_dssp             --TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCC
T ss_pred             --ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcC
Confidence              236899999993   10         0                     015889999999999999887643211   


Q ss_pred             -HHHHHHHHHHHHhCCeEeEEeeeec---CCCCCceEEEEEEecCC
Q 022962          231 -EEVKNSERAVQLMGASLLQLCSVES---QSPFGQRTAVVCLKSRR  272 (289)
Q Consensus       231 -~ei~~~~~~l~~~g~~~~~~~~~~~---~~~~~~r~lv~~~k~~~  272 (289)
                       .....+.+.+-+.+. +..+..+..   ....-.-.+++++|.++
T Consensus       404 ~~~~~~iRk~Lle~~~-l~aII~LP~~lF~~t~i~t~Ilvl~K~k~  448 (544)
T 3khk_A          404 TNNEGEIRKTLVEQDL-VECMVALPGQLFTNTQIPACIWFLTKDKN  448 (544)
T ss_dssp             GGGHHHHHHHHHHTTC-EEEEEECCTTBCCSCSSCEEEEEEESCCS
T ss_pred             cchHHHHHHHHHhCCc-HhEEEECCCCCCCCCCCCeEEEEEecCCC
Confidence             111223334444443 444543321   11122455677776654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.72  E-value=6.3e-08  Score=85.48  Aligned_cols=122  Identities=11%  Similarity=-0.031  Sum_probs=76.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +++.+|||||||+|.++..++...+...|+|+|+...+....... ...+. ++..++.+++.....   +++||+|+|+
T Consensus        73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~-~ii~~~~~~dv~~l~---~~~~DlVlsD  147 (277)
T 3evf_A           73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW-NIITFKDKTDIHRLE---PVKCDTLLCD  147 (277)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG-GGEEEECSCCTTTSC---CCCCSEEEEC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC-CeEEEeccceehhcC---CCCccEEEec
Confidence            347799999999999999888665667889999874321000000 00111 455566665443322   3689999998


Q ss_pred             Ccc--------cH--HHHHHHHccccccC-eEEEEEEcCC-cHHHHHHHHHHHHHhCCeE
Q 022962          200 AVA--------EM--RILAEYCLPLVRVG-GLFVAAKGHD-PQEEVKNSERAVQLMGASL  247 (289)
Q Consensus       200 ~~~--------~~--~~ll~~~~~~Lkpg-G~l~~~~g~~-~~~ei~~~~~~l~~~g~~~  247 (289)
                      ...        ..  -.+++.+.++|+|| |.|++ +-.. ..++..++.+.++..--.+
T Consensus       148 ~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~pyg~~~~~l~~~lk~~F~~V  206 (277)
T 3evf_A          148 IGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLAPYMPDVLEKLELLQRRFGGT  206 (277)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESCTTSHHHHHHHHHHHHHHCCE
T ss_pred             CccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecCCCCccHHHHHHHHHHhcCCE
Confidence            421        11  24578889999999 99987 4332 1455556666666543333

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.68  E-value=1.8e-07  Score=83.54  Aligned_cols=124  Identities=13%  Similarity=0.021  Sum_probs=91.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-----CCCEEEEEeCChH--------------------------HHHHHHHHHHHcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-----PDWKVTLLESMNK--------------------------RCVFLEHAVSLTQ  169 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-----p~~~V~~iD~s~~--------------------------~l~~a~~~~~~~~  169 (289)
                      ..+.||++||..|..++.+|...     ++.+|+++|..+.                          .++.++++.++.|
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            36799999999999999987654     4789999997521                          4677899999999


Q ss_pred             C--CCEEEEeccccccCCCCcCCCCceEEEEcCcc--cHHHHHHHHccccccCeEEEEEEcCCc-HHHHHHHHHHHHHhC
Q 022962          170 L--LNVQIVRGRAETLGKDVSFREQYDVAVARAVA--EMRILAEYCLPLVRVGGLFVAAKGHDP-QEEVKNSERAVQLMG  244 (289)
Q Consensus       170 l--~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~--~~~~ll~~~~~~LkpgG~l~~~~g~~~-~~ei~~~~~~l~~~g  244 (289)
                      +  ++|+++.+++.+.-.. ...++||+|+..+-.  .....++.+.+.|+|||.+++ ..... ....+.+.+..+..|
T Consensus       186 l~~~~I~li~Gda~etL~~-~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~-DD~~~~~G~~~Av~Ef~~~~~  263 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDTLPT-APIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIV-DDYMMCPPCKDAVDEYRAKFD  263 (282)
T ss_dssp             CCSTTEEEEESCHHHHSTT-CCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEE-SSCTTCHHHHHHHHHHHHHTT
T ss_pred             CCcCceEEEEeCHHHHHhh-CCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEE-cCCCCCHHHHHHHHHHHHhcC
Confidence            8  5799999999874322 113689999988632  456889999999999999876 33322 333344444555667


Q ss_pred             Ce
Q 022962          245 AS  246 (289)
Q Consensus       245 ~~  246 (289)
                      +.
T Consensus       264 i~  265 (282)
T 2wk1_A          264 IA  265 (282)
T ss_dssp             CC
T ss_pred             Cc
Confidence            65

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.68  E-value=6.9e-07  Score=82.23  Aligned_cols=138  Identities=14%  Similarity=0.049  Sum_probs=90.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +.+|.+|||+||++|.++-.+++.  +++|+|||+.+-.     ....  ...+|+++++|+..+...   ..+||+|+|
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~-----~~l~--~~~~V~~~~~d~~~~~~~---~~~~D~vvs  276 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMA-----QSLM--DTGQVTWLREDGFKFRPT---RSNISWMVC  276 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCC-----HHHH--TTTCEEEECSCTTTCCCC---SSCEEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcC-----hhhc--cCCCeEEEeCccccccCC---CCCcCEEEE
Confidence            467999999999999999998865  6799999986511     1122  234799999999887653   267999999


Q ss_pred             cCcccHHHHHHHHccccccC---eEEEEEEcC--CcHHHH----HHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962          199 RAVAEMRILAEYCLPLVRVG---GLFVAAKGH--DPQEEV----KNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~Lkpg---G~l~~~~g~--~~~~ei----~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      ....++..++..+.++|..+   +.++..+-.  ...+++    ..+.+.+...|+.. .+. ..+-..+.+...|.++|
T Consensus       277 Dm~~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~-~l~-akhL~hdReEiTV~~rk  354 (375)
T 4auk_A          277 DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA-QIQ-ARQLYHDREEVTVHVRR  354 (375)
T ss_dssp             CCSSCHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCE-EEE-EECCTTCSSEEEEEEEE
T ss_pred             cCCCChHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcch-hhe-ehhhccCCcEEEEEEEe
Confidence            97777777777666666655   555544432  222333    33455667788753 222 11112234555666665


Q ss_pred             c
Q 022962          270 S  270 (289)
Q Consensus       270 ~  270 (289)
                      .
T Consensus       355 ~  355 (375)
T 4auk_A          355 I  355 (375)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.56  E-value=2.4e-08  Score=88.25  Aligned_cols=120  Identities=13%  Similarity=-0.025  Sum_probs=73.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +++.+|||||||+|.|+...+...+...|+|+|+...+...+... +..+. ++.....+++.....   .+++|+|+|.
T Consensus        89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g~-~ii~~~~~~dv~~l~---~~~~DvVLSD  163 (282)
T 3gcz_A           89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLGW-NLIRFKDKTDVFNME---VIPGDTLLCD  163 (282)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTG-GGEEEECSCCGGGSC---CCCCSEEEEC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCCC-ceEEeeCCcchhhcC---CCCcCEEEec
Confidence            457799999999999999888666777899999976432111100 01121 333344333222211   3689999997


Q ss_pred             Cc--------ccH--HHHHHHHccccccC--eEEEEEEcCCcHHHHHHHHHHHHHhC
Q 022962          200 AV--------AEM--RILAEYCLPLVRVG--GLFVAAKGHDPQEEVKNSERAVQLMG  244 (289)
Q Consensus       200 ~~--------~~~--~~ll~~~~~~Lkpg--G~l~~~~g~~~~~ei~~~~~~l~~~g  244 (289)
                      .-        +..  -.+++.+.++|+||  |.|++-.-....++..++.+.++..-
T Consensus       164 mApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F  220 (282)
T 3gcz_A          164 IGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKH  220 (282)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred             CccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhc
Confidence            31        111  24688889999999  99987332111455555566665543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.41  E-value=4.2e-06  Score=77.33  Aligned_cols=147  Identities=11%  Similarity=0.042  Sum_probs=97.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH-----cCC---CCEEEEeccccccCCC-CcCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL-----TQL---LNVQIVRGRAETLGKD-VSFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~-----~~l---~ni~~~~~d~~~~~~~-~~~~~~  192 (289)
                      +.+||=||-|.|..+..+.+ ++..+|+.||+++..++.+++....     ...   ++++++.+|...+-.. ....++
T Consensus       206 pkrVLIIGgGdG~~~revlk-h~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          206 GKDVLILGGGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TCEEEEEECTTCHHHHHHHT-TCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCeEEEECCCcHHHHHHHHh-cCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            57999999999998888775 4568999999999999999985321     111   3589999998765321 011357


Q ss_pred             ceEEEEcCcc--------------cHHHHHHHHccccccCeEEEEEEc-CCcHHHHHHHHHHHHHhCCeEeEEeee--ec
Q 022962          193 YDVAVARAVA--------------EMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASLLQLCSV--ES  255 (289)
Q Consensus       193 fD~V~sn~~~--------------~~~~ll~~~~~~LkpgG~l~~~~g-~~~~~ei~~~~~~l~~~g~~~~~~~~~--~~  255 (289)
                      ||+|+.....              -.+++++.+.+.|+|||.++.-.+ ....+.+..+.+.++..... +.....  ..
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF~~-v~~~~~~~~V  363 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCP-VEFSKEIVCV  363 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSSSC-EEEEEEEECC
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhCCc-ceEeeEEEEe
Confidence            9999987321              136788999999999999987543 33345555566666665332 232211  12


Q ss_pred             CCCCCceEEEEEEec
Q 022962          256 QSPFGQRTAVVCLKS  270 (289)
Q Consensus       256 ~~~~~~r~lv~~~k~  270 (289)
                      |.-.+.+..+++.|+
T Consensus       364 PSy~~~W~F~~aSK~  378 (381)
T 3c6k_A          364 PSYLELWVFYTVWKK  378 (381)
T ss_dssp             GGGSSCEEEEEEEEC
T ss_pred             cCCCCceeeeEEECC
Confidence            433456766666654

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.34  E-value=3e-06  Score=72.93  Aligned_cols=122  Identities=16%  Similarity=0.050  Sum_probs=78.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-cccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +++.+|+||||++|.++...+......+|+|+|+-..--+. -...+.+|-+.|+|..+ |+..++.     .++|.|+|
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gwn~v~fk~gvDv~~~~~-----~~~Dtllc  150 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGWNIVKLMSGKDVFYLPP-----EKCDTLLC  150 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTTTSEEEECSCCGGGCCC-----CCCSEEEE
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCcCceEEEeccceeecCC-----ccccEEEE
Confidence            34779999999999999988877666789999996532100 00112345556999998 9877654     57999999


Q ss_pred             cC--------ccc--HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHH-HhCCeEe
Q 022962          199 RA--------VAE--MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQ-LMGASLL  248 (289)
Q Consensus       199 n~--------~~~--~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~-~~g~~~~  248 (289)
                      .-        ++.  .-.+|+-+.++|++ |.|++-.-.....++.+..+.++ ..|-..+
T Consensus       151 DIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~~fgg~lV  210 (267)
T 3p8z_A          151 DIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQRKHGGMLV  210 (267)
T ss_dssp             CCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHHHHCCEEE
T ss_pred             ecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHHHhCCEeE
Confidence            72        111  12377888899998 77776322223333333333333 4555444

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.32  E-value=4.4e-07  Score=80.75  Aligned_cols=119  Identities=13%  Similarity=-0.007  Sum_probs=71.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+||||||++|.|+-.++...+...|+|+|+...+...... ....+. ++.....++......   .+++|+|+|..
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~l~---~~~~DlVlsD~  155 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFTMP---TEPSDTLLCDI  155 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTTSC---CCCCSEEEECC
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEeecCceeeecC---CCCcCEEeecC
Confidence            5889999999999999998876566789999997532100000 000111 333333332222111   36899999973


Q ss_pred             ccc----------HHHHHHHHccccccC-eEEEEEEcCCcHHHHHHHHHHHHHhC
Q 022962          201 VAE----------MRILAEYCLPLVRVG-GLFVAAKGHDPQEEVKNSERAVQLMG  244 (289)
Q Consensus       201 ~~~----------~~~ll~~~~~~Lkpg-G~l~~~~g~~~~~ei~~~~~~l~~~g  244 (289)
                      -++          ...+++-+.++|+|| |.|++-.-....++..++...++..-
T Consensus       156 APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F  210 (300)
T 3eld_A          156 GESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRF  210 (300)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhC
Confidence            211          135688889999999 99987332212445555565565543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.30  E-value=1.6e-06  Score=78.73  Aligned_cols=75  Identities=12%  Similarity=0.103  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC---cCCCCceEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV---SFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~---~~~~~fD~V  196 (289)
                      ++..++|..||.|.-+..++... |.++|+|+|.++.+++.++    ++..+++++++++..++....   ...+++|.|
T Consensus        57 pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~----rL~~~Rv~lv~~nF~~l~~~L~~~g~~~~vDgI  132 (347)
T 3tka_A           57 PDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK----TIDDPRFSIIHGPFSALGEYVAERDLIGKIDGI  132 (347)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT----TCCCTTEEEEESCGGGHHHHHHHTTCTTCEEEE
T ss_pred             CCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH----hhcCCcEEEEeCCHHHHHHHHHhcCCCCcccEE
Confidence            58899999999999999998774 7799999999999999884    233357999999988763210   112369999


Q ss_pred             EEc
Q 022962          197 VAR  199 (289)
Q Consensus       197 ~sn  199 (289)
                      +.+
T Consensus       133 LfD  135 (347)
T 3tka_A          133 LLD  135 (347)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            987

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.29  E-value=3.1e-06  Score=73.82  Aligned_cols=112  Identities=15%  Similarity=-0.022  Sum_probs=67.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCC----CEEEEEe--CChHHHHHHHHHHHHcCCCCEEEEec-cccccCCCCcCCC
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPD----WKVTLLE--SMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFRE  191 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~----~~V~~iD--~s~~~l~~a~~~~~~~~l~ni~~~~~-d~~~~~~~~~~~~  191 (289)
                      ++++.+|+|+||+.|.|+...+...+-    +.|+|+|  +.+-..       ...|..=+.+.++ |+.++..     .
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~Gv~~i~~~~G~Df~~~~~-----~  138 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSYGWNIVTMKSGVDVFYKPS-----E  138 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CSTTGGGEEEECSCCGGGSCC-----C
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCCCceEEEeeccCCccCCCC-----C
Confidence            446899999999999999998765222    3455555  211000       0012111466667 9987542     5


Q ss_pred             CceEEEEcC--------cc---cHHHHHHHHccccccCe-EEEEEEcCCcHHHHHHHHHHHHHh
Q 022962          192 QYDVAVARA--------VA---EMRILAEYCLPLVRVGG-LFVAAKGHDPQEEVKNSERAVQLM  243 (289)
Q Consensus       192 ~fD~V~sn~--------~~---~~~~ll~~~~~~LkpgG-~l~~~~g~~~~~ei~~~~~~l~~~  243 (289)
                      ++|+|+|..        ++   .+. .++-+.++|+||| .|++=.-....+++.+..+.++..
T Consensus       139 ~~DvVLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~  201 (269)
T 2px2_A          139 ISDTLLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRR  201 (269)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHH
Confidence            799999973        11   122 6778889999999 887632222235555544455443

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.28  E-value=7.9e-06  Score=75.83  Aligned_cols=102  Identities=9%  Similarity=0.013  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHH-----------------CCCCEEEEEeCC-----------hHHHHHHHHHHHHcCC-CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIA-----------------CPDWKVTLLESM-----------NKRCVFLEHAVSLTQL-LN  172 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~-----------------~p~~~V~~iD~s-----------~~~l~~a~~~~~~~~l-~n  172 (289)
                      ..+|+|+|||+|..++.+...                 .|..+|+..|+-           +...+.+   .+..|. .+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~---~~~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNL---EKENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHH---HHHTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhh---hhhccCCCC
Confidence            468999999999999887655                 367899999986           3332222   122332 13


Q ss_pred             EEEEeccccccCCCCcCCCCceEEEEcC-----------cc--------------------------------cHHHHHH
Q 022962          173 VQIVRGRAETLGKDVSFREQYDVAVARA-----------VA--------------------------------EMRILAE  209 (289)
Q Consensus       173 i~~~~~d~~~~~~~~~~~~~fD~V~sn~-----------~~--------------------------------~~~~ll~  209 (289)
                      -.|+.+....+-.....+++||+|+|+.           +.                                ++..+|+
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~  209 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR  209 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4566666655422212358999999983           10                                1233477


Q ss_pred             HHccccccCeEEEEEEc
Q 022962          210 YCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       210 ~~~~~LkpgG~l~~~~g  226 (289)
                      ...+.|+|||++++..+
T Consensus       210 ~Ra~eL~pGG~mvl~~~  226 (384)
T 2efj_A          210 IHSEELISRGRMLLTFI  226 (384)
T ss_dssp             HHHHHEEEEEEEEEEEE
T ss_pred             HHHHHhccCCeEEEEEe
Confidence            77899999999998764

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.28  E-value=3.5e-06  Score=74.80  Aligned_cols=123  Identities=16%  Similarity=0.030  Sum_probs=76.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-cccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +++.+||||||++|.++...+......+|+|+|+-..--+. -...+.++-..|.+..+ |+..++.     .++|+|+|
T Consensus        93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w~lV~~~~~~Dv~~l~~-----~~~D~ivc  166 (321)
T 3lkz_A           93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGWNIVTMKSGVDVFYRPS-----ECCDTLLC  166 (321)
T ss_dssp             CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTGGGEEEECSCCTTSSCC-----CCCSEEEE
T ss_pred             CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCCcceEEEeccCHhhCCC-----CCCCEEEE
Confidence            34779999999999999987776666689999996531000 00001222223888887 8877654     56999999


Q ss_pred             cC--------ccc--HHHHHHHHccccccC-eEEEEEEcCCcHHHHHHHHHHH-HHhCCeEe
Q 022962          199 RA--------VAE--MRILAEYCLPLVRVG-GLFVAAKGHDPQEEVKNSERAV-QLMGASLL  248 (289)
Q Consensus       199 n~--------~~~--~~~ll~~~~~~Lkpg-G~l~~~~g~~~~~ei~~~~~~l-~~~g~~~~  248 (289)
                      .-        ++.  .-.+|+-+.++|++| |.|++-.-....+++.+..+.+ ...|-.++
T Consensus       167 DigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~fgg~lv  228 (321)
T 3lkz_A          167 DIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYGGGLV  228 (321)
T ss_dssp             CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHHCCEEE
T ss_pred             ECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHhCCEeE
Confidence            72        111  123777888999999 8887633223334443333333 34555444

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.24  E-value=1.2e-06  Score=70.05  Aligned_cols=82  Identities=16%  Similarity=0.123  Sum_probs=57.8

Q ss_pred             CCeEEEEcCCCC-hHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE-Ec
Q 022962          122 NLKLVDVGTGAG-LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV-AR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G-~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~-sn  199 (289)
                      +.+|||||||+| ..+..||.. .+..|+++|+++.+++               +++.|+.+....  .-+.||+|. .|
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------------~v~dDiF~P~~~--~Y~~~DLIYsir   97 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------------IVRDDITSPRME--IYRGAALIYSIR   97 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------------EECCCSSSCCHH--HHTTEEEEEEES
T ss_pred             CCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------------eEEccCCCCccc--ccCCcCEEEEcC
Confidence            579999999999 499999864 3689999999987654               888999874321  114799995 57


Q ss_pred             CcccHHHHHHHHccccccCeEEEE
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      ...++...+-++.+.+  |.-+++
T Consensus        98 PP~El~~~i~~lA~~v--~adliI  119 (153)
T 2k4m_A           98 PPAEIHSSLMRVADAV--GARLII  119 (153)
T ss_dssp             CCTTTHHHHHHHHHHH--TCEEEE
T ss_pred             CCHHHHHHHHHHHHHc--CCCEEE
Confidence            6665554444444333  455554

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.22  E-value=1.7e-06  Score=76.72  Aligned_cols=73  Identities=16%  Similarity=0.096  Sum_probs=59.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-c-CCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-S-FREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~-~~~~fD~V~s  198 (289)
                      +++.++|.+||.|..+..++..  +++|+|+|.|+.+++.+++ .+.   +++++++++..++.... . ..++||.|++
T Consensus        22 ~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~   95 (285)
T 1wg8_A           22 PGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAALGVERVDGILA   95 (285)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHcCCCCcCEEEe
Confidence            4789999999999999999976  6899999999999999987 543   58999999998874210 0 1147999998


Q ss_pred             c
Q 022962          199 R  199 (289)
Q Consensus       199 n  199 (289)
                      +
T Consensus        96 D   96 (285)
T 1wg8_A           96 D   96 (285)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.17  E-value=4.1e-05  Score=74.04  Aligned_cols=149  Identities=11%  Similarity=0.043  Sum_probs=91.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-------------CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-------------PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV  187 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-------------p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~  187 (289)
                      ++.+|+|-+||||.+.+......             ....++|+|+++.+...|+.|.--.|.+.-.+.++|....+...
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~  296 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE  296 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh
Confidence            47799999999999877654321             13579999999999999999988888766667777765543211


Q ss_pred             -cCCCCceEEEEcCc-------------------cc-HHHHHHHHccccc-------cCeEEEEEEcCC------cHHHH
Q 022962          188 -SFREQYDVAVARAV-------------------AE-MRILAEYCLPLVR-------VGGLFVAAKGHD------PQEEV  233 (289)
Q Consensus       188 -~~~~~fD~V~sn~~-------------------~~-~~~ll~~~~~~Lk-------pgG~l~~~~g~~------~~~ei  233 (289)
                       ....+||+|++|+.                   .+ --.+++.+.+.||       +||++.++.+..      ....+
T Consensus       297 ~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~i  376 (530)
T 3ufb_A          297 MGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARI  376 (530)
T ss_dssp             CCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHH
T ss_pred             hcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHHH
Confidence             11257999999930                   01 1234555555554       799999876421      12223


Q ss_pred             HHHHHHHHHhCCeEeEEeeeecC--CC--CCceEEEEEEecCCC
Q 022962          234 KNSERAVQLMGASLLQLCSVESQ--SP--FGQRTAVVCLKSRRT  273 (289)
Q Consensus       234 ~~~~~~l~~~g~~~~~~~~~~~~--~~--~~~r~lv~~~k~~~~  273 (289)
                         .+.+-+. +.+..+..++.-  .+  .-.-.+++++|.+++
T Consensus       377 ---Rk~Lle~-~~l~aII~LP~~~F~~~tgi~t~Il~~~K~~~~  416 (530)
T 3ufb_A          377 ---KEELLKN-FNLHTIVRLPEGVFAPYTDIAGNLLFFDRSGPT  416 (530)
T ss_dssp             ---HHHHHHH-SEEEEEEECCTTTTTTTCCCCEEEEEEESSSCC
T ss_pred             ---HHHHhhc-CEEEEEEECCcccCcCCCCCcEEEEEEECCCCC
Confidence               3333333 345555544311  11  123457777776543

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.12  E-value=4.6e-06  Score=77.24  Aligned_cols=105  Identities=12%  Similarity=0.076  Sum_probs=63.5

Q ss_pred             CCeEEEEcCCCChHHHHHHH--------HC-------CCCEEEEEeCChHHHHHHHHHHHHcC-----------C-CCEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAI--------AC-------PDWKVTLLESMNKRCVFLEHAVSLTQ-----------L-LNVQ  174 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~--------~~-------p~~~V~~iD~s~~~l~~a~~~~~~~~-----------l-~ni~  174 (289)
                      ..+|+|+|||+|..++.+..        .+       |..+|+..|+-...-...=.......           . .+-.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            67999999999999988721        21       67788888865543222211111100           0 0112


Q ss_pred             EEeccccccCCCCcCCCCceEEEEcC-----------cc-------------------------------cHHHHHHHHc
Q 022962          175 IVRGRAETLGKDVSFREQYDVAVARA-----------VA-------------------------------EMRILAEYCL  212 (289)
Q Consensus       175 ~~~~d~~~~~~~~~~~~~fD~V~sn~-----------~~-------------------------------~~~~ll~~~~  212 (289)
                      ++.+....+-.....+++||+|+|+.           +.                               ++..+++...
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333211111257999999982           10                               4566888999


Q ss_pred             cccccCeEEEEEEc
Q 022962          213 PLVRVGGLFVAAKG  226 (289)
Q Consensus       213 ~~LkpgG~l~~~~g  226 (289)
                      +.|+|||++++...
T Consensus       213 ~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          213 AEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHEEEEEEEEEEEE
T ss_pred             HHhCCCCEEEEEEe
Confidence            99999999998753

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=98.07  E-value=7.8e-05  Score=66.97  Aligned_cols=140  Identities=15%  Similarity=0.115  Sum_probs=86.4

Q ss_pred             CeEEEEcCCCChHHHHHH----HHCCCC--EEEEEeCCh--------H-HHHHHHHHHHHc---CCCC--EEEEeccccc
Q 022962          123 LKLVDVGTGAGLPGLVLA----IACPDW--KVTLLESMN--------K-RCVFLEHAVSLT---QLLN--VQIVRGRAET  182 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la----~~~p~~--~V~~iD~s~--------~-~l~~a~~~~~~~---~l~n--i~~~~~d~~~  182 (289)
                      -+|||+|-|+|...+...    +..|..  +++.+|..+        . .-+..+......   .-.+  +++..+|+.+
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~  177 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK  177 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence            579999999999765432    234554  456677521        1 111222222221   1123  5677899877


Q ss_pred             cCCCCcCCCCceEEEEcCccc-------HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeec
Q 022962          183 LGKDVSFREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVES  255 (289)
Q Consensus       183 ~~~~~~~~~~fD~V~sn~~~~-------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~  255 (289)
                      .-... ...+||+|+-.++++       -..+++.++++++|||+|+-+...   ..   +.+.|..+||.+.+..    
T Consensus       178 ~l~~l-~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaa---g~---VRR~L~~aGF~V~k~~----  246 (308)
T 3vyw_A          178 RIKEV-ENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSS---LS---VRKSLLTLGFKVGSSR----  246 (308)
T ss_dssp             HGGGC-CSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCC---HH---HHHHHHHTTCEEEEEE----
T ss_pred             HHhhh-cccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCc---HH---HHHHHHHCCCEEEecC----
Confidence            43221 124799999987542       268999999999999999854332   23   3446779999877664    


Q ss_pred             CCCCCceEEEEEEecCCCC
Q 022962          256 QSPFGQRTAVVCLKSRRTP  274 (289)
Q Consensus       256 ~~~~~~r~lv~~~k~~~~p  274 (289)
                       ...+.|.+.+..+..+.|
T Consensus       247 -G~g~KReml~A~~~~~~~  264 (308)
T 3vyw_A          247 -EIGRKRKGTVASLKAPVP  264 (308)
T ss_dssp             -CC---CEEEEEESSSCCC
T ss_pred             -CCCCCCceeEEecCCCCC
Confidence             456778888888765443

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.00  E-value=7.1e-06  Score=72.82  Aligned_cols=126  Identities=9%  Similarity=-0.050  Sum_probs=95.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccccc-CCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL-GKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~-~~~~~~~~~fD~V~sn~  200 (289)
                      +..+||+=+|||.+++.+..  ++.+++.+|.+++.++..++|++.  .+++++++.|.... ........+||+|+...
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP  167 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  167 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence            55789999999999999765  468999999999999999998865  34799999997552 21001125799999985


Q ss_pred             -c---ccHHHHHHHHcc--ccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          201 -V---AEMRILAEYCLP--LVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 -~---~~~~~ll~~~~~--~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                       .   ..+..+++.+..  .+.++|.+++..+.....++..+.+.++..|.++..+.
T Consensus       168 PYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~~~l~~e  224 (283)
T 2oo3_A          168 SYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSVRIE  224 (283)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSSEEEEE
T ss_pred             CCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCCCeEEEE
Confidence             2   356666665554  45699999999988788888888888888887554443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.92  E-value=2.1e-05  Score=70.32  Aligned_cols=47  Identities=11%  Similarity=0.007  Sum_probs=41.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ  169 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~  169 (289)
                      ++..|||++||+|..++.++..  +.+++|+|+++.+++.|+++++...
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            4789999999999999887754  5799999999999999999988753

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.89  E-value=0.00027  Score=62.79  Aligned_cols=109  Identities=12%  Similarity=0.123  Sum_probs=71.7

Q ss_pred             CCCCCeEEEEcC------CCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCC
Q 022962          119 CNSNLKLVDVGT------GAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFRE  191 (289)
Q Consensus       119 ~~~~~~VLDiGc------G~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~  191 (289)
                      .+.+.+|||+|+      -.|.  ..+.+..|. +.|+++|+.+-.           ...++ ++++|..++..    ..
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~-----------sda~~-~IqGD~~~~~~----~~  168 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV-----------SDADS-TLIGDCATVHT----AN  168 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB-----------CSSSE-EEESCGGGEEE----SS
T ss_pred             ecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccc-----------cCCCe-EEEcccccccc----CC
Confidence            345899999997      4454  345556776 699999997632           11234 48999876543    37


Q ss_pred             CceEEEEcC---------cc------cHHHHHHHHccccccCeEEEEE--EcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          192 QYDVAVARA---------VA------EMRILAEYCLPLVRVGGLFVAA--KGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       192 ~fD~V~sn~---------~~------~~~~ll~~~~~~LkpgG~l~~~--~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      +||+|+|..         .+      -.+.+++-+.+.|+|||.|++=  .|.. .+.+.+    +++ -|+.+.+.
T Consensus       169 k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg-~~~L~~----lrk-~F~~VK~f  239 (344)
T 3r24_A          169 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW-NADLYK----LMG-HFSWWTAF  239 (344)
T ss_dssp             CEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC-CHHHHH----HHT-TEEEEEEE
T ss_pred             CCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC-HHHHHH----HHh-hCCeEEEE
Confidence            899999972         11      1466778888999999999863  3554 333333    222 66666555

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.85  E-value=0.00013  Score=66.74  Aligned_cols=120  Identities=12%  Similarity=0.186  Sum_probs=77.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCC-CCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFR-EQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~-~~fD~V~sn  199 (289)
                      ..+|+|+.||+|.+++.+....- ...|.++|+++.+++..+.|..     +..++++|+.++... ... ..+|+|+..
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~-~~~~~~~D~l~~g   75 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLE-EFDRLSFDMILMS   75 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHH-HHHHHCCSEEEEC
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHh-HcCcCCcCEEEEc
Confidence            35899999999999999887621 1369999999999999888753     345678999887431 111 168999987


Q ss_pred             Cc-------------cc-----HHHHHHHHccccc--cCeEEEEEE--cCCcHHHHHHHHHHHHHhCCeEeE
Q 022962          200 AV-------------AE-----MRILAEYCLPLVR--VGGLFVAAK--GHDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       200 ~~-------------~~-----~~~ll~~~~~~Lk--pgG~l~~~~--g~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                      ..             .+     +..+++ +...++  |. .++++-  |-........+.+.+++.|+.+..
T Consensus        76 pPCq~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~~~~P~-~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~  145 (343)
T 1g55_A           76 PPCQPFTRIGRQGDMTDSRTNSFLHILD-ILPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQYQE  145 (343)
T ss_dssp             CC------------------CHHHHHHH-HGGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred             CCCcchhhcCCcCCccCccchHHHHHHH-HHHHhcCCCC-EEEEeCCccccCHHHHHHHHHHHHHCCCeeEE
Confidence            31             11     122333 333455  65 444432  322334566677888899987654

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.85  E-value=1.1e-05  Score=74.26  Aligned_cols=105  Identities=13%  Similarity=0.166  Sum_probs=70.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHH----------------CCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIA----------------CPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLG  184 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~----------------~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~  184 (289)
                      ..+|+|+||++|..++.+...                .|..+|+..|.-...-..+-........ .+-.|+.+....+-
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            458999999999887765432                4678999999877665555443322111 12355566555532


Q ss_pred             CCCcCCCCceEEEEcC-----------c--------------------------ccHHHHHHHHccccccCeEEEEEEc
Q 022962          185 KDVSFREQYDVAVARA-----------V--------------------------AEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       185 ~~~~~~~~fD~V~sn~-----------~--------------------------~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      .....++++|+|+|+.           +                          .++..+|+...+.|+|||++++..+
T Consensus       132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~  210 (359)
T 1m6e_X          132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence            2212357999999982           0                          1456778999999999999998763

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.41  E-value=0.00027  Score=64.79  Aligned_cols=60  Identities=20%  Similarity=0.231  Sum_probs=50.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG  184 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~  184 (289)
                      +..|||||.|.|.++..|+......+|++||++...+..+++.. .  .+|++++++|+.++.
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~~~l~ii~~D~l~~~  118 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--GSPLQILKRDPYDWS  118 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--TSSCEEECSCTTCHH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--CCCEEEEECCccchh
Confidence            57899999999999999997544568999999999999998865 2  358999999997653

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.36  E-value=0.0039  Score=57.56  Aligned_cols=116  Identities=13%  Similarity=0.024  Sum_probs=75.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCC-EEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-----CCCCceEE
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-----FREQYDVA  196 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~~-~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-----~~~~fD~V  196 (289)
                      .+++|+.||+|.+++.+...  +. .|.++|+++.+++..+.|.     .+..++++|+.++.....     ....+|+|
T Consensus         3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i   75 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI   75 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred             CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence            47999999999999998876  34 4679999999988887763     356788999988743210     12579999


Q ss_pred             EEcCc------------cc-HHHHHHH---HccccccCeEEEEEE--cC---CcHHHHHHHHHHHHHhCCeE
Q 022962          197 VARAV------------AE-MRILAEY---CLPLVRVGGLFVAAK--GH---DPQEEVKNSERAVQLMGASL  247 (289)
Q Consensus       197 ~sn~~------------~~-~~~ll~~---~~~~LkpgG~l~~~~--g~---~~~~ei~~~~~~l~~~g~~~  247 (289)
                      +....            .+ ...++.+   +...++|. .++++-  |.   .....+..+. .+...|+.+
T Consensus        76 ~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~-~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v  145 (376)
T 3g7u_A           76 IGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPL-FFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDI  145 (376)
T ss_dssp             EECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCS-EEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEE
T ss_pred             EecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCC-EEEEecchHhhccCcHHHHHHHH-HHHcCCCcc
Confidence            98631            11 1122222   22345675 344443  21   2233456666 788999987

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.36  E-value=0.00026  Score=61.95  Aligned_cols=49  Identities=12%  Similarity=0.068  Sum_probs=40.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL  170 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l  170 (289)
                      .++..|||..||||..++..++.  +.+++|+|+++.+++.++++++.+++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            35889999999999988886654  67999999999999999999886653

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.33  E-value=0.00065  Score=63.50  Aligned_cols=63  Identities=17%  Similarity=0.149  Sum_probs=52.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHH-HHCCC-CEEEEEeCChHHHHHHHHHHHH---cCC-CCEEEEecccc
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLA-IACPD-WKVTLLESMNKRCVFLEHAVSL---TQL-LNVQIVRGRAE  181 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la-~~~p~-~~V~~iD~s~~~l~~a~~~~~~---~~l-~ni~~~~~d~~  181 (289)
                      ++++..++|||++.|..++.++ +..+. .+|+++|+++...+.+++|.+.   ++. +|+++++.-+-
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            4568899999999999999888 55654 7999999999999999999987   345 67887765443

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.29  E-value=0.0077  Score=54.48  Aligned_cols=116  Identities=13%  Similarity=0.065  Sum_probs=75.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+++|+.||+|.+++.+... ....|.++|+++.+++..+.|....    .   ++|+.++.... . ..+|+|+... 
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~~----~---~~Di~~~~~~~-~-~~~D~l~~gpP   80 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK----P---EGDITQVNEKT-I-PDHDILCAGFP   80 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC----C---BSCGGGSCGGG-S-CCCSEEEEECC
T ss_pred             CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCC----C---cCCHHHcCHhh-C-CCCCEEEECCC
Confidence            578999999999999888765 3345889999999999988876422    1   68888875421 1 3599999862 


Q ss_pred             ------------ccc-----HHHHHHHHccccccCeEEEEEE--cC---CcHHHHHHHHHHHHHhCCeEeE
Q 022962          201 ------------VAE-----MRILAEYCLPLVRVGGLFVAAK--GH---DPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       201 ------------~~~-----~~~ll~~~~~~LkpgG~l~~~~--g~---~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                                  ..+     +..+++.+ +.++|. .++++-  |.   .....+..+.+.++..|+.+..
T Consensus        81 CQ~fS~ag~~~g~~d~r~~L~~~~~r~i-~~~~P~-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~  149 (327)
T 2c7p_A           81 CQAFSISGKQKGFEDSRGTLFFDIARIV-REKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA  149 (327)
T ss_dssp             CTTTCTTSCCCGGGSTTSCHHHHHHHHH-HHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred             CCCcchhcccCCCcchhhHHHHHHHHHH-HhccCc-EEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEE
Confidence                        111     12333322 335775 444543  21   1234566777888899986543

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.05  E-value=0.0081  Score=54.50  Aligned_cols=121  Identities=10%  Similarity=0.051  Sum_probs=75.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          123 LKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      .+++|+.||.|.+++.+....-. .-|.++|+++.+++..+.|..     +..++++|+.++.........+|+++... 
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~~~~D~l~ggpP   78 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKKWNVDTILMSPP   78 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhccCCCCEEEecCC
Confidence            47999999999998888766322 347899999999888777642     34467889988753211113689999761 


Q ss_pred             ------------ccc-----HHHHHHHHccccc-cCeEEEEEE--cCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          201 ------------VAE-----MRILAEYCLPLVR-VGGLFVAAK--GHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       201 ------------~~~-----~~~ll~~~~~~Lk-pgG~l~~~~--g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                                  ..+     +..+++.+ +.++ |. .++++-  |.........+.+.+++.|+.+...
T Consensus        79 CQ~fS~ag~~~~~~d~r~~L~~~~~r~i-~~~~~P~-~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~  146 (333)
T 4h0n_A           79 CQPFTRNGKYLDDNDPRTNSFLYLIGIL-DQLDNVD-YILMENVKGFENSTVRNLFIDKLKECNFIYQEF  146 (333)
T ss_dssp             CCCSEETTEECCTTCTTSCCHHHHHHHG-GGCTTCC-EEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred             CcchhhhhhccCCcCcccccHHHHHHHH-HHhcCCC-EEEEecchhhhhhhHHHHHHHHHHhCCCeEEEE
Confidence                        111     23344333 3344 64 344443  2122334566778888999876543

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.97  E-value=0.015  Score=52.55  Aligned_cols=121  Identities=2%  Similarity=-0.125  Sum_probs=75.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-CCCEE-EEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC-PDWKV-TLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~-p~~~V-~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ..+++|+.||.|.+++.+.... +...| .++|+++.+++..+.|...     . ++++|+.++.........+|+++..
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~~~~Dil~gg   83 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIESLNCNTWFMS   83 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHHTCCCEEEEC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhccCCCCEEEec
Confidence            4689999999999988887652 12345 6999999999888887532     1 5678888775321111268999965


Q ss_pred             ----Cc-----------cc-HHHHHHHHcc-c---c--ccCeEEEEEE--cCCcHHHHHHHHHHHHHhCCeEeE
Q 022962          200 ----AV-----------AE-MRILAEYCLP-L---V--RVGGLFVAAK--GHDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       200 ----~~-----------~~-~~~ll~~~~~-~---L--kpgG~l~~~~--g~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                          ++           .+ ...++.++.+ +   +  +|. .++++-  |-........+.+.+++.|+.+..
T Consensus        84 pPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~-~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~  156 (327)
T 3qv2_A           84 PPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPK-HIFIENVPLFKESLVFKEIYNILIKNQYYIKD  156 (327)
T ss_dssp             CCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCS-EEEEEECGGGGGSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCC-EEEEEchhhhcChHHHHHHHHHHHhCCCEEEE
Confidence                22           12 1234444444 3   4  454 334442  222234566677888899997654

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.87  E-value=0.00046  Score=63.94  Aligned_cols=98  Identities=15%  Similarity=0.052  Sum_probs=63.1

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccccc-CC---CCcCCCCce
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL-GK---DVSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~-~~---~~~~~~~fD  194 (289)
                      +++.+||-+|+|+ |..++.+|+.....+|+++|.+++.++.++    ++|.+   ++..+-.++ ..   .......||
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~---~i~~~~~~~~~~~~~~~~~g~g~D  256 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS----DAGFE---TIDLRNSAPLRDQIDQILGKPEVD  256 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH----TTTCE---EEETTSSSCHHHHHHHHHSSSCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCc---EEcCCCcchHHHHHHHHhCCCCCC
Confidence            3588999999876 777778887764449999999998877664    45652   332211111 00   000113699


Q ss_pred             EEEEcCccc------------HHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAE------------MRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~------------~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+-..-..            ....++.+.+.|++||++++.
T Consensus       257 vvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          257 CGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             EEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             EEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            999653221            234677788899999998753

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.75  E-value=0.095  Score=46.76  Aligned_cols=115  Identities=16%  Similarity=0.150  Sum_probs=75.1

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCC-EEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC--
Q 022962          124 KLVDVGTGAGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--  200 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~p~~-~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--  200 (289)
                      +|+|+-||.|.+++.+.++  +. -|.++|+++.+++..+.|.   +   -.++++|+.++.... . ...|+++...  
T Consensus         2 kvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~---~---~~~~~~DI~~i~~~~-~-~~~D~l~ggpPC   71 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH---S---AKLIKGDISKISSDE-F-PKCDGIIGGPPS   71 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHC---C---SEEEESCGGGCCGGG-S-CCCSEEECCCCG
T ss_pred             eEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC---C---CCcccCChhhCCHhh-C-CcccEEEecCCC
Confidence            6999999999988887655  34 4679999999988877752   1   356789999886532 2 3689998762  


Q ss_pred             -----------cccH-HHHHHH---HccccccCeEEEEEEc-----CCcHHHHHHHHHHHHHhCCeEeE
Q 022962          201 -----------VAEM-RILAEY---CLPLVRVGGLFVAAKG-----HDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       201 -----------~~~~-~~ll~~---~~~~LkpgG~l~~~~g-----~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                                 ..+. ..++.+   +.+.++|. .++++--     ....+.+..+.+.+...|+.+..
T Consensus        72 Q~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~  139 (331)
T 3ubt_Y           72 QSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHI  139 (331)
T ss_dssp             GGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS-EEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCcCCCCCccCCCCchhHHHHHHHHHHhccCCe-EEEeeeecccccccccchhhhhhhhhccCCcEEEE
Confidence                       1111 122222   23346776 4445531     23345677788888999987543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.74  E-value=0.0035  Score=62.23  Aligned_cols=124  Identities=19%  Similarity=0.175  Sum_probs=80.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-------CC-----CEEEEEeCChHHHHHHHH--------------HHHHc-----C-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC-------PD-----WKVTLLESMNKRCVFLEH--------------AVSLT-----Q-  169 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~-------p~-----~~V~~iD~s~~~l~~a~~--------------~~~~~-----~-  169 (289)
                      .-+|+|+|.|+|...+.+.+..       |.     .+++.+|..+-..+.+++              ..+..     | 
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            4589999999999888875542       21     679999994433333322              11111     1 


Q ss_pred             ----CC----CEEEEeccccccCCCCc--CCCCceEEEEcCccc-------HHHHHHHHccccccCeEEEEEEcCCcHHH
Q 022962          170 ----LL----NVQIVRGRAETLGKDVS--FREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEE  232 (289)
Q Consensus       170 ----l~----ni~~~~~d~~~~~~~~~--~~~~fD~V~sn~~~~-------~~~ll~~~~~~LkpgG~l~~~~g~~~~~e  232 (289)
                          ++    .++++.+|+.+.-....  ....||+++..++++       -..++..+.++++|||.+.-....   ..
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~---~~  215 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTAA---GF  215 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCCC---HH
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccCc---HH
Confidence                11    36788899977432210  136799999986542       278899999999999998753322   23


Q ss_pred             HHHHHHHHHHhCCeEeEEe
Q 022962          233 VKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       233 i~~~~~~l~~~g~~~~~~~  251 (289)
                         +.+.+.+.||.+....
T Consensus       216 ---vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          216 ---VRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             ---HHHHHHHTTCEEEEEE
T ss_pred             ---HHHHHHhCCeEEEecc
Confidence               3446778999877664

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.69  E-value=0.0018  Score=59.28  Aligned_cols=98  Identities=12%  Similarity=0.164  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceE
Q 022962          119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDV  195 (289)
Q Consensus       119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~  195 (289)
                      ++++.+||-+|+|+ |..++.+|+.....+|+++|.+++.++.+++    +|.+.  ++..+-.++...  ....+.||+
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~~~~~gg~D~  261 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGATH--VINSKTQDPVAAIKEITDGGVNF  261 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCSE--EEETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCCE--EecCCccCHHHHHHHhcCCCCcE
Confidence            45688999999876 6777777776544489999999998877754    46532  222211111000  001136999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-..-.  ...++.+.+.|+++|++++.
T Consensus       262 vid~~g~--~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          262 ALESTGS--PEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             EEECSCC--HHHHHHHHHTEEEEEEEEEC
T ss_pred             EEECCCC--HHHHHHHHHHHhcCCEEEEe
Confidence            9865422  34567778899999998864

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.61  E-value=0.0017  Score=60.02  Aligned_cols=97  Identities=15%  Similarity=0.061  Sum_probs=63.1

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccc-----ccCCCCcCCCCc
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAE-----TLGKDVSFREQY  193 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~-----~~~~~~~~~~~f  193 (289)
                      +++.+||-+|+|+ |..++.+|+.....+|+++|.+++.++.+++    +|.+   ++..+-.     .+... .....+
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~i~~~~~~~~~~~v~~~-t~g~g~  255 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGFE---IADLSLDTPLHEQIAAL-LGEPEV  255 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCE---EEETTSSSCHHHHHHHH-HSSSCE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCCc---EEccCCcchHHHHHHHH-hCCCCC
Confidence            3588999999865 6777778877654589999999998877754    5652   2321111     11000 012369


Q ss_pred             eEEEEcCccc-------------HHHHHHHHccccccCeEEEEE
Q 022962          194 DVAVARAVAE-------------MRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       194 D~V~sn~~~~-------------~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+|+-..-..             ....++.+.++|++||++++.
T Consensus       256 Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          256 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            9999653211             234677888899999998764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.56  E-value=0.0036  Score=56.89  Aligned_cols=96  Identities=16%  Similarity=0.137  Sum_probs=61.4

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc---ccccCCC--CcCCCCce
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---AETLGKD--VSFREQYD  194 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d---~~~~~~~--~~~~~~fD  194 (289)
                      ++.+||-+|+|+ |..++.+|+.....+|+++|.+++.++.++    ++|.+.  ++..+   -.++...  ....+.||
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~~~~~~i~~~~~~g~D  244 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK----EIGADL--VLQISKESPQEIARKVEGQLGCKPE  244 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCSE--EEECSSCCHHHHHHHHHHHHTSCCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCCE--EEcCcccccchHHHHHHHHhCCCCC
Confidence            488999999875 666777777764449999999998877665    466642  22221   1111000  00014699


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+-..-.  ...++.+.++|+++|+++..
T Consensus       245 ~vid~~g~--~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          245 VTIECTGA--EASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             EEEECSCC--HHHHHHHHHHSCTTCEEEEC
T ss_pred             EEEECCCC--hHHHHHHHHHhcCCCEEEEE
Confidence            99865432  23566677899999998864

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.51  E-value=0.0031  Score=57.05  Aligned_cols=99  Identities=13%  Similarity=0.099  Sum_probs=63.8

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cCCCCcCCCCceEE
Q 022962          119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVA  196 (289)
Q Consensus       119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~~~~~~~~~fD~V  196 (289)
                      ++++.+||=+|+|+ |..++.+|+...+.+|+++|.+++.++.+++    +|.+.+--...+..+ +.. ......+|+|
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~v~~-~t~g~g~d~v  243 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGADAAVKSGAGAADAIRE-LTGGQGATAV  243 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCSEEEECSTTHHHHHHH-HHGGGCEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcCCCcHHHHHHH-HhCCCCCeEE
Confidence            34588999999865 6666777777667899999999998877754    665432111111111 100 0012379999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +-..-.  ...++.+.+.|+++|++++.
T Consensus       244 ~d~~G~--~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          244 FDFVGA--QSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             EESSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred             EECCCC--HHHHHHHHHHHhcCCEEEEE
Confidence            865322  24667777899999999864

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.50  E-value=0.0064  Score=55.00  Aligned_cols=88  Identities=14%  Similarity=0.115  Sum_probs=60.9

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+||-+|+|+ |..++.+|+.. +++|+++|.+++..+.+++    +|.+.+  + .+.+.+      .+.+|+|+-.
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~v--~-~~~~~~------~~~~D~vid~  241 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALS----MGVKHF--Y-TDPKQC------KEELDFIIST  241 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHH----TTCSEE--E-SSGGGC------CSCEEEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHh----cCCCee--c-CCHHHH------hcCCCEEEEC
Confidence            588999999865 66666777766 5699999999988776654    676433  2 343332      2379999965


Q ss_pred             CcccHHHHHHHHccccccCeEEEEE
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .-..  ..++.+.+.|+++|++++.
T Consensus       242 ~g~~--~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          242 IPTH--YDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             CCSC--CCHHHHHTTEEEEEEEEEC
T ss_pred             CCcH--HHHHHHHHHHhcCCEEEEE
Confidence            3221  1355667899999999875

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.33  E-value=0.084  Score=52.04  Aligned_cols=124  Identities=18%  Similarity=0.171  Sum_probs=80.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-------C-----CCEEEEEeC---ChHHHHHHH-----------HHHHHc-----CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC-------P-----DWKVTLLES---MNKRCVFLE-----------HAVSLT-----QL  170 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~-------p-----~~~V~~iD~---s~~~l~~a~-----------~~~~~~-----~l  170 (289)
                      .-+|+|+|-|+|...+...+..       |     ..+++++|.   +.+.+..+-           +..+..     |.
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            3589999999999887765432       2     256999998   666655221           112111     10


Q ss_pred             ---------CCEEEEeccccccCCCC--cCCCCceEEEEcCccc-------HHHHHHHHccccccCeEEEEEEcCCcHHH
Q 022962          171 ---------LNVQIVRGRAETLGKDV--SFREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEE  232 (289)
Q Consensus       171 ---------~ni~~~~~d~~~~~~~~--~~~~~fD~V~sn~~~~-------~~~ll~~~~~~LkpgG~l~~~~g~~~~~e  232 (289)
                               -.+++..+|+.+.-...  .....||+++..++++       -..+++.+.++++|||.+.-....   ..
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~---~~  223 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA---GF  223 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCCC---HH
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccCc---HH
Confidence                     12566778887643211  1135799999986542       368899999999999998753322   23


Q ss_pred             HHHHHHHHHHhCCeEeEEe
Q 022962          233 VKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       233 i~~~~~~l~~~g~~~~~~~  251 (289)
                         +.+.+.+.||.+....
T Consensus       224 ---vr~~L~~aGf~v~~~~  239 (676)
T 3ps9_A          224 ---VRRGLQDAGFTMQKRK  239 (676)
T ss_dssp             ---HHHHHHHHTCEEEEEE
T ss_pred             ---HHHHHHhCCeEEEecc
Confidence               3446678999877654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.31  E-value=0.01  Score=53.45  Aligned_cols=96  Identities=16%  Similarity=0.093  Sum_probs=63.1

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEE
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAV  197 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~  197 (289)
                      +++.+||-.|+|+ |..++.+|+.. +++|+++|.+++.++.+++    +|.+.+  +..+-+++.... ...+.+|+|+
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~--i~~~~~~~~~~~~~~~g~~d~vi  237 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARR----LGAEVA--VNARDTDPAAWLQKEIGGAHGVL  237 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSEE--EETTTSCHHHHHHHHHSSEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH----cCCCEE--EeCCCcCHHHHHHHhCCCCCEEE
Confidence            3588999999976 77788888876 5699999999998877654    665422  221111111000 0013689998


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      -....  ...++.+.+.|+++|+++..
T Consensus       238 d~~g~--~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          238 VTAVS--PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             ESSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred             EeCCC--HHHHHHHHHHhccCCEEEEe
Confidence            66432  34667777899999998864

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.29  E-value=0.0054  Score=54.54  Aligned_cols=80  Identities=14%  Similarity=0.064  Sum_probs=53.5

Q ss_pred             CCEEEEeccccccCCCCcCCCCceEEEEcCc-----------------c-------cHHHHHHHHccccccCeEEEEEEc
Q 022962          171 LNVQIVRGRAETLGKDVSFREQYDVAVARAV-----------------A-------EMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       171 ~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~-----------------~-------~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      .+++++++|..+.... ..+++||+|+++..                 .       .+..+++++.++|||||.++++.+
T Consensus        20 ~~~~i~~gD~~~~l~~-l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           20 GVHRLHVGDAREVLAS-FPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             -CEEEEESCHHHHHTT-SCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCEEEECcHHHHHhh-CCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            4689999999884221 11378999999831                 0       134677899999999999999887


Q ss_pred             CCc------H-----HHHHHHHHHHHHhCCeEeEEe
Q 022962          227 HDP------Q-----EEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       227 ~~~------~-----~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      ...      .     .-...+...+++.||......
T Consensus        99 d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~i  134 (297)
T 2zig_A           99 DVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLNPI  134 (297)
T ss_dssp             CEEEECC----EEEECHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCccccccCCcccccccHHHHHHHHHHcCCeeeccE
Confidence            532      0     011234456678899877644

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.28  E-value=0.0026  Score=57.77  Aligned_cols=97  Identities=11%  Similarity=0.059  Sum_probs=60.3

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCceE
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYDV  195 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD~  195 (289)
                      +++.+||=+|+|+ |..++.+|+.....+|+++|.+++.++.+++    +|.+.  ++..+-.++..   .......+|+
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~v~~~t~g~g~D~  238 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGATD--IINYKNGDIVEQILKATDGKGVDK  238 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCCE--EECGGGSCHHHHHHHHTTTCCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCce--EEcCCCcCHHHHHHHHcCCCCCCE
Confidence            4588999999865 6666667766543489999999988777654    56542  22211111110   0011236999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-..-.  ...++.+.+.|++||+++..
T Consensus       239 v~d~~g~--~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          239 VVIAGGD--VHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             EEECSSC--TTHHHHHHHHEEEEEEEEEC
T ss_pred             EEECCCC--hHHHHHHHHHHhcCCEEEEe
Confidence            9854322  13556667789999998853

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.21  E-value=0.019  Score=50.15  Aligned_cols=126  Identities=13%  Similarity=0.048  Sum_probs=79.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHH-------CCCCEEEEEe-----CChH-------------------HHHHHHHH------
Q 022962          122 NLKLVDVGTGAGLPGLVLAIA-------CPDWKVTLLE-----SMNK-------------------RCVFLEHA------  164 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~-------~p~~~V~~iD-----~s~~-------------------~l~~a~~~------  164 (289)
                      .+.|+++||-.|.-++.+|..       .+..+|++.|     +...                   ..+..++.      
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            568999999999988887643       3568999999     3210                   01112221      


Q ss_pred             HHHcCC--CCEEEEeccccccCCCC---cCCCCceEEEEcCc--ccHHHHHHHHccccccCeEEEEEEcCC---cHHHHH
Q 022962          165 VSLTQL--LNVQIVRGRAETLGKDV---SFREQYDVAVARAV--AEMRILAEYCLPLVRVGGLFVAAKGHD---PQEEVK  234 (289)
Q Consensus       165 ~~~~~l--~ni~~~~~d~~~~~~~~---~~~~~fD~V~sn~~--~~~~~ll~~~~~~LkpgG~l~~~~g~~---~~~ei~  234 (289)
                      .+.++.  ++|+++.+++.+.-...   ....+||+|+..+-  ......++.+...|+|||.+++ ....   ...+-+
T Consensus       150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~-DD~~~~~w~G~~~  228 (257)
T 3tos_A          150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAF-DELDNPKWPGENI  228 (257)
T ss_dssp             TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE-SSTTCTTCTHHHH
T ss_pred             hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEE-cCCCCCCChHHHH
Confidence            123453  57999999998742110   01247999998863  3456778999999999999986 3221   223333


Q ss_pred             HHHHHHHHhCCeEe
Q 022962          235 NSERAVQLMGASLL  248 (289)
Q Consensus       235 ~~~~~l~~~g~~~~  248 (289)
                      .+.+.+...+..+.
T Consensus       229 A~~ef~~~~~~~i~  242 (257)
T 3tos_A          229 AMRKVLGLDHAPLR  242 (257)
T ss_dssp             HHHHHTCTTSSCCE
T ss_pred             HHHHHHhhCCCeEE
Confidence            34444445565443

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.20  E-value=0.0067  Score=55.51  Aligned_cols=96  Identities=18%  Similarity=0.117  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec---cccc-cCCC-CcCCCCce
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAET-LGKD-VSFREQYD  194 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~---d~~~-~~~~-~~~~~~fD  194 (289)
                      ++.+||=+|+|+ |..++.+|+.....+|+++|.+++..+.+++    +|.+.+  +..   |+.+ +... ....+.+|
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~v--i~~~~~~~~~~i~~~~~~~~gg~D  255 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGATAT--VDPSAGDVVEAIAGPVGLVPGGVD  255 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCSEE--ECTTSSCHHHHHHSTTSSSTTCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCCEE--ECCCCcCHHHHHHhhhhccCCCCC
Confidence            588999999865 6666777777654599999999988777655    565422  221   1111 1100 00124799


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+-..-.  ...++.+.++|++||++++.
T Consensus       256 vvid~~G~--~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          256 VVIECAGV--AETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             EEEECSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCC--HHHHHHHHHHhccCCEEEEE
Confidence            99865321  34567777899999999864

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.08  E-value=0.004  Score=51.45  Aligned_cols=94  Identities=10%  Similarity=0.058  Sum_probs=56.2

Q ss_pred             CCCeEEEEcCCC--ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccc---ccCCCCcCCCCceE
Q 022962          121 SNLKLVDVGTGA--GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAE---TLGKDVSFREQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGcG~--G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~---~~~~~~~~~~~fD~  195 (289)
                      ++.+||..|+++  |.....++... +.+|+++|.+++..+.++    .+|.+.+ +-..+..   .+... .....+|+
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~----~~g~~~~-~d~~~~~~~~~~~~~-~~~~~~D~  110 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS----RLGVEYV-GDSRSVDFADEILEL-TDGYGVDV  110 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH----TTCCSEE-EETTCSTHHHHHHHH-TTTCCEEE
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCCEE-eeCCcHHHHHHHHHH-hCCCCCeE
Confidence            478999999543  33333344333 579999999998776554    3454311 1111110   01000 01236999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+.++-   ...++.+.+.|+++|+++..
T Consensus       111 vi~~~g---~~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          111 VLNSLA---GEAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             EEECCC---THHHHHHHHTEEEEEEEEEC
T ss_pred             EEECCc---hHHHHHHHHHhccCCEEEEE
Confidence            997753   24677788899999998864

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.05  E-value=0.012  Score=53.24  Aligned_cols=95  Identities=14%  Similarity=0.092  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc-ccccCCC--CcC----CCC
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-AETLGKD--VSF----REQ  192 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d-~~~~~~~--~~~----~~~  192 (289)
                      ++.+||-+|+|+ |..++.+|+.. +++|+++|.+++.++.++    .+|.+.  ++..+ -.++...  ...    ...
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~~--~~~~~~~~~~~~~i~~~~~~~~g~g  240 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAK----NCGADV--TLVVDPAKEEESSIIERIRSAIGDL  240 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH----HTTCSE--EEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHH----HhCCCE--EEcCcccccHHHHHHHHhccccCCC
Confidence            478999999864 55666677665 567999999998877765    466642  22211 0111000  000    146


Q ss_pred             ceEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          193 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       193 fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+|+-..-.  ...++.+.+.|+++|+++..
T Consensus       241 ~D~vid~~g~--~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          241 PNVTIDCSGN--EKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             CSEEEECSCC--HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCEEEECCCC--HHHHHHHHHHHhcCCEEEEE
Confidence            9999866432  23566677889999998864

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.92  E-value=0.01  Score=54.20  Aligned_cols=96  Identities=14%  Similarity=0.034  Sum_probs=61.5

Q ss_pred             CCCeEEEEc-CC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVG-TG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiG-cG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~~~~~~~~~fD~V~  197 (289)
                      ++.+||=.| +| .|..++.+|+...+.+|+++|.+++.++.+++    +|.+.+--...+..+ +..  ...+.+|+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad~vi~~~~~~~~~v~~--~~~~g~Dvvi  244 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAHHVIDHSKPLAAEVAA--LGLGAPAFVF  244 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCSEEECTTSCHHHHHHT--TCSCCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCCHHHHHHH--hcCCCceEEE
Confidence            477999998 44 36677777876457899999999988877754    665422110111111 111  0125799988


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      -..-.  ...++.+.++|+++|+++..
T Consensus       245 d~~g~--~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          245 STTHT--DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             ECSCH--HHHHHHHHHHSCTTCEEEEC
T ss_pred             ECCCc--hhhHHHHHHHhcCCCEEEEE
Confidence            65322  24566777889999999865

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.89  E-value=0.0058  Score=55.74  Aligned_cols=95  Identities=18%  Similarity=0.038  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCceE
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYDV  195 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD~  195 (289)
                      +++.+||=+|+|+ |..++.+|+.. +++|+++|.+++.++.+++    +|.+.+  +..+-.++..   .......+|+
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~v--i~~~~~~~~~~v~~~~~g~g~D~  260 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFA----LGADHG--INRLEEDWVERVYALTGDRGADH  260 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----HTCSEE--EETTTSCHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHH----cCCCEE--EcCCcccHHHHHHHHhCCCCceE
Confidence            4588999999775 66666677765 5699999999988777654    565422  2222111110   0001237999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-..-.   ..++.+.+.|+++|++++.
T Consensus       261 vid~~g~---~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          261 ILEIAGG---AGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             EEEETTS---SCHHHHHHHEEEEEEEEEE
T ss_pred             EEECCCh---HHHHHHHHHhhcCCEEEEE
Confidence            9965332   2455666789999999865

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.86  E-value=0.015  Score=53.10  Aligned_cols=93  Identities=18%  Similarity=0.148  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+||-+|+|+ |..++.+|+.. +++|+++|.+++.++.+++    +|.+.+  +..+-.+....  ..+.+|+|+-.
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~----lGa~~v--i~~~~~~~~~~--~~~g~Dvvid~  264 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----LGADEV--VNSRNADEMAA--HLKSFDFILNT  264 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSEE--EETTCHHHHHT--TTTCEEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCcEE--eccccHHHHHH--hhcCCCEEEEC
Confidence            588999999874 66666677765 5689999999988877754    565422  22111111110  11469999965


Q ss_pred             CcccHHHHHHHHccccccCeEEEEE
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .-..  ..++.+.+.|+++|+++..
T Consensus       265 ~g~~--~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          265 VAAP--HNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             CSSC--CCHHHHHTTEEEEEEEEEC
T ss_pred             CCCH--HHHHHHHHHhccCCEEEEe
Confidence            3221  1345566899999998754

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.78  E-value=0.013  Score=52.77  Aligned_cols=95  Identities=12%  Similarity=0.019  Sum_probs=59.9

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccc-cccCCCCcCCCCceEEEE
Q 022962          122 NLKLVDVGTGA-GLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~-G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~-~~~~~~~~~~~~fD~V~s  198 (289)
                      +.+||-+|+|+ |..++.+|+.. |+++|+++|.+++..+.+++    +|.+.+  +..+- .+..........+|+|+-
T Consensus       171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~v--i~~~~~~~~~~~~~~g~g~D~vid  244 (344)
T 2h6e_A          171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGADYV--SEMKDAESLINKLTDGLGASIAID  244 (344)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCSEE--ECHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCCEE--eccccchHHHHHhhcCCCccEEEE
Confidence            78999999864 55556666654 36799999999988877754    565422  21111 111000001237999996


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEE
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..-.  ...++.+.+.|+++|+++..
T Consensus       245 ~~g~--~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          245 LVGT--EETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             SSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCC--hHHHHHHHHHhhcCCEEEEe
Confidence            6432  23566777889999998864

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.77  E-value=0.01  Score=54.95  Aligned_cols=99  Identities=14%  Similarity=0.103  Sum_probs=58.9

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCceE
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYDV  195 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD~  195 (289)
                      +++.+||=+|+|+ |..++.+|+.....+|+++|.+++.++.+++    +|.+.  ++..+-.++..   .......+|+
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~i~~~t~g~g~D~  285 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE----LGADH--VIDPTKENFVEAVLDYTNGLGAKL  285 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCSE--EECTTTSCHHHHHHHHTTTCCCSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCCE--EEcCCCCCHHHHHHHHhCCCCCCE
Confidence            4588999999854 5555667776654599999999998887754    56532  22221111100   0001236999


Q ss_pred             EEEcC-cc--cHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARA-VA--EMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~-~~--~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-.. ..  ....+++.+.+.++++|++++.
T Consensus       286 vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          286 FLEATGVPQLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             EEECCCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence            99553 22  2333444333555999999864

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.75  E-value=0.014  Score=53.30  Aligned_cols=97  Identities=12%  Similarity=0.076  Sum_probs=60.9

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccc--cccCCC--CcCCCCce
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA--ETLGKD--VSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~--~~~~~~--~~~~~~fD  194 (289)
                      +++.+||-+|+|+ |..++.+|+.....+|+++|.+++.++.++    ++|.+.+  +..+-  +++...  ....+.+|
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~~v--i~~~~~~~~~~~~~~~~~~~g~D  264 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGATDF--VNPNDHSEPISQVLSKMTNGGVD  264 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCCEE--ECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HhCCceE--EeccccchhHHHHHHHHhCCCCC
Confidence            3588999999764 556666777764448999999998887765    4565422  21110  111000  00013699


Q ss_pred             EEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVG-GLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~  224 (289)
                      +|+-..-.  ...++.+.++|+++ |+++..
T Consensus       265 ~vid~~g~--~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          265 FSLECVGN--VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             EEEECSCC--HHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEEECCCC--HHHHHHHHHHhhcCCcEEEEE
Confidence            99865422  34567778899999 998864

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.69  E-value=0.063  Score=48.19  Aligned_cols=79  Identities=15%  Similarity=0.058  Sum_probs=55.0

Q ss_pred             CEEEEeccccccCCCCcCCCCceEEEEcCc------------------ccHHHHHHHHccccccCeEEEEEEcCCc----
Q 022962          172 NVQIVRGRAETLGKDVSFREQYDVAVARAV------------------AEMRILAEYCLPLVRVGGLFVAAKGHDP----  229 (289)
Q Consensus       172 ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~----  229 (289)
                      +..++++|..+.-.. ..+++||+|+++..                  ..+..+++++.++|+|||.+++..+...    
T Consensus        14 ~~~ii~gD~~~~l~~-l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~   92 (323)
T 1boo_A           14 NGSMYIGDSLELLES-FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGV   92 (323)
T ss_dssp             SEEEEESCHHHHGGG-SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTE
T ss_pred             CceEEeCcHHHHHhh-CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCC
Confidence            578899998763211 11478999999831                  1367888999999999999999887541    


Q ss_pred             ----HHHHHHHHHHHHHhCCeEeEEe
Q 022962          230 ----QEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       230 ----~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                          ...+..+...++..||.+....
T Consensus        93 ~~~~~~~~~~i~~~~~~~Gf~~~~~i  118 (323)
T 1boo_A           93 PARSIYNFRVLIRMIDEVGFFLAEDF  118 (323)
T ss_dssp             EEECCHHHHHHHHHHHTTCCEEEEEE
T ss_pred             cccccchHHHHHHHHHhCCCEEEEEE
Confidence                1223344455678899877644

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.64  E-value=0.022  Score=51.65  Aligned_cols=98  Identities=17%  Similarity=0.068  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec--cccccCC---CCcCCCCce
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG--RAETLGK---DVSFREQYD  194 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~--d~~~~~~---~~~~~~~fD  194 (289)
                      ++.+||=+|+|+ |..++.+|+......|+++|.+++.++.+++.    .-.-+.+...  +-+++..   .......+|
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~D  254 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI----CPEVVTHKVERLSAEESAKKIVESFGGIEPA  254 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH----CTTCEEEECCSCCHHHHHHHHHHHTSSCCCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----chhcccccccccchHHHHHHHHHHhCCCCCC
Confidence            478999999865 66667777776444599999999998888764    1111222211  1111100   000124799


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+-..-.  ...++.+.++|++||++++.
T Consensus       255 vvid~~g~--~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          255 VALECTGV--ESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             EEEECSCC--HHHHHHHHHHSCTTCEEEEC
T ss_pred             EEEECCCC--hHHHHHHHHHhcCCCEEEEE
Confidence            99865322  23566677899999999864

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.60  E-value=0.0067  Score=55.70  Aligned_cols=96  Identities=22%  Similarity=0.213  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc---ccccCC---CCcCCCCc
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---AETLGK---DVSFREQY  193 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d---~~~~~~---~~~~~~~f  193 (289)
                      ++.+||-+|+|. |..++.+|+.....+|+++|.+++.++.++    ++|.+.+  +..+   -.++..   .......+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~----~lGa~~v--i~~~~~~~~~~~~~v~~~~~g~g~  268 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE----EIGADLT--LNRRETSVEERRKAIMDITHGRGA  268 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH----HTTCSEE--EETTTSCHHHHHHHHHHHTTTSCE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH----HcCCcEE--EeccccCcchHHHHHHHHhCCCCC
Confidence            488999999653 555566676654369999999998877765    4665422  2222   111100   00011369


Q ss_pred             eEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          194 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       194 D~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+|+-..-.  ...++.+.+.|+++|+++..
T Consensus       269 Dvvid~~g~--~~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          269 DFILEATGD--SRALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             EEEEECSSC--TTHHHHHHHHEEEEEEEEEC
T ss_pred             cEEEECCCC--HHHHHHHHHHHhcCCEEEEE
Confidence            999966422  12455667789999998764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.59  E-value=0.015  Score=52.99  Aligned_cols=98  Identities=13%  Similarity=0.036  Sum_probs=61.0

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccc--cccCCC--CcCCCCc
Q 022962          119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA--ETLGKD--VSFREQY  193 (289)
Q Consensus       119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~--~~~~~~--~~~~~~f  193 (289)
                      ++++.+||-+|+|+ |..++.+|+.....+|+++|.+++.++.++    ++|.+.+  +..+-  +++...  ....+.+
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~~~i~~~t~gg~  262 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI----ELGATEC--LNPKDYDKPIYEVICEKTNGGV  262 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HTTCSEE--ECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCcEE--EecccccchHHHHHHHHhCCCC
Confidence            34588999999764 555666676654448999999998877765    4676422  21110  111000  0011369


Q ss_pred             eEEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962          194 DVAVARAVAEMRILAEYCLPLVRVG-GLFVAA  224 (289)
Q Consensus       194 D~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~  224 (289)
                      |+|+-..-.  ...++.+.+.|+++ |+++..
T Consensus       263 Dvvid~~g~--~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          263 DYAVECAGR--IETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             SEEEECSCC--HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CEEEECCCC--HHHHHHHHHHHhcCCCEEEEE
Confidence            999865322  34567777899999 998764

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=95.55  E-value=0.033  Score=50.05  Aligned_cols=97  Identities=18%  Similarity=0.044  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCCC-hHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccc-cCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVGTGAG-LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET-LGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G-~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~-~~~~~~~~~~fD~V~  197 (289)
                      ++.+||=+|+|++ ..++.+++...+.+|+++|.+++.++.+++    +|.+. +..-..|..+ +.. ......+|.++
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~-~t~g~g~d~~~  237 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKK-ITGGLGVQSAI  237 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHH-HTTSSCEEEEE
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhh-hcCCCCceEEE
Confidence            4889999999864 344555666667899999999988766554    56532 2111122211 110 01123577777


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      -....  ...+..+.+.|+++|++++.
T Consensus       238 ~~~~~--~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          238 VCAVA--RIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             ECCSC--HHHHHHHHHTEEEEEEEEEC
T ss_pred             EeccC--cchhheeheeecCCceEEEE
Confidence            65433  34566777899999998754

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.45  E-value=0.024  Score=50.45  Aligned_cols=74  Identities=9%  Similarity=0.009  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC-CCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~-V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~-~~~fD~V~s  198 (289)
                      .+.+++|+-||.|.+++.+....-... |.++|+++.+++..+.|.     .+..++.+|+.++...... ...+|+++.
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~~~~~~Dll~g   89 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQEWGPFDLVIG   89 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHHHTCCCSEEEE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhcccCCcCEEEe
Confidence            467999999999998888776522222 699999999888777653     2346778999887532100 136899997


Q ss_pred             c
Q 022962          199 R  199 (289)
Q Consensus       199 n  199 (289)
                      .
T Consensus        90 g   90 (295)
T 2qrv_A           90 G   90 (295)
T ss_dssp             C
T ss_pred             c
Confidence            6

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.42  E-value=0.021  Score=52.03  Aligned_cols=97  Identities=10%  Similarity=0.009  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccc--cccCCC--CcCCCCce
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA--ETLGKD--VSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~--~~~~~~--~~~~~~fD  194 (289)
                      +++.+||-+|+|. |..++.+|+.....+|+++|.+++.++.++    ++|.+.+  +..+-  +++...  ....+.+|
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~~v--i~~~~~~~~~~~~~~~~~~~g~D  263 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK----EVGATEC--VNPQDYKKPIQEVLTEMSNGGVD  263 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCSEE--ECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCceE--ecccccchhHHHHHHHHhCCCCc
Confidence            3588999999764 556666777664348999999998877764    4565422  21110  111000  00113699


Q ss_pred             EEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVG-GLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~  224 (289)
                      +|+-..-.  ...++.+.+.|+++ |+++..
T Consensus       264 ~vid~~g~--~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          264 FSFEVIGR--LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             EEEECSCC--HHHHHHHHHHBCTTTCEEEEC
T ss_pred             EEEECCCC--HHHHHHHHHHhhcCCcEEEEe
Confidence            99865422  24566777889999 998753

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.41  E-value=0.022  Score=52.04  Aligned_cols=97  Identities=9%  Similarity=0.060  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccc--cccCCC--CcCCCCce
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA--ETLGKD--VSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~--~~~~~~--~~~~~~fD  194 (289)
                      +++.+||-+|+|+ |..++.+|+.....+|+++|.+++.++.++    ++|.+.+  +..+-  +++...  ....+.+|
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~~~v~~~~~~g~D  267 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK----ALGATDC--LNPRELDKPVQDVITELTAGGVD  267 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCSEE--ECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCcEE--EccccccchHHHHHHHHhCCCcc
Confidence            3588999999763 556666777664448999999998877664    4665422  21110  111000  00013699


Q ss_pred             EEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVG-GLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~  224 (289)
                      +|+-..-.  ...++.+.+.|+++ |++++.
T Consensus       268 vvid~~G~--~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          268 YSLDCAGT--AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             EEEESSCC--HHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEEECCCC--HHHHHHHHHHhhcCCCEEEEE
Confidence            99865322  34567777899999 998753

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.38  E-value=0.019  Score=52.38  Aligned_cols=97  Identities=9%  Similarity=0.041  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccc--cccCCC--CcCCCCce
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA--ETLGKD--VSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~--~~~~~~--~~~~~~fD  194 (289)
                      +++.+||-+|+|+ |..++.+|+.....+|+++|.+++.++.+++    +|.+.+  +..+-  +++...  ....+.+|
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~v--i~~~~~~~~~~~~v~~~~~~g~D  262 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGATEC--INPQDFSKPIQEVLIEMTDGGVD  262 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCSEE--ECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceE--eccccccccHHHHHHHHhCCCCC
Confidence            3588999999764 5555666666543489999999988877754    565422  21110  111000  00113699


Q ss_pred             EEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVG-GLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~  224 (289)
                      +|+-..-.  ...++.+.+.|+++ |+++..
T Consensus       263 ~vid~~g~--~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          263 YSFECIGN--VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             EEEECSCC--HHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEEECCCc--HHHHHHHHHhhccCCcEEEEE
Confidence            99865422  24567777899999 998763

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.33  E-value=0.02  Score=51.28  Aligned_cols=97  Identities=10%  Similarity=0.040  Sum_probs=58.9

Q ss_pred             CCCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCce
Q 022962          119 CNSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYD  194 (289)
Q Consensus       119 ~~~~~~VLDiGcG--~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD  194 (289)
                      ++++.+||-.|++  .|.....+++.. +++|+++|.+++.++.++    .+|.+ ..+-..+.+++...  ....+.+|
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~----~~g~~-~~~d~~~~~~~~~~~~~~~~~~~d  216 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLK----QIGFD-AAFNYKTVNSLEEALKKASPDGYD  216 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCS-EEEETTSCSCHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH----hcCCc-EEEecCCHHHHHHHHHHHhCCCCe
Confidence            4468899999983  344444445444 569999999998776663    34543 21211110111000  00114699


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +++.++-.   ..++.+.+.|++||++++.
T Consensus       217 ~vi~~~g~---~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          217 CYFDNVGG---EFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             EEEESSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred             EEEECCCh---HHHHHHHHHHhcCCEEEEE
Confidence            99988643   2467788999999999864

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.32  E-value=0.016  Score=53.09  Aligned_cols=97  Identities=12%  Similarity=0.033  Sum_probs=60.9

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc--ccccCCC--CcCCCCce
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR--AETLGKD--VSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d--~~~~~~~--~~~~~~fD  194 (289)
                      +++.+||=+|+|+ |..++.+|+.....+|+++|.+++.++.++    ++|.+.  ++...  -.++...  ...++.+|
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~~~~~i~~~~~gg~D  265 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK----KFGVNE--FVNPKDHDKPIQEVIVDLTDGGVD  265 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH----TTTCCE--EECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCcE--EEccccCchhHHHHHHHhcCCCCC
Confidence            4588999999863 666666776654448999999999887665    466542  22111  1111000  00123799


Q ss_pred             EEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVG-GLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~  224 (289)
                      +|+-..-.  ...++.+.+.|++| |++++.
T Consensus       266 ~vid~~g~--~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          266 YSFECIGN--VSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             EEEECSCC--HHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEEECCCC--HHHHHHHHHHhhccCCEEEEE
Confidence            99865322  34567778899997 998864

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.31  E-value=0.016  Score=51.96  Aligned_cols=97  Identities=14%  Similarity=0.106  Sum_probs=61.2

Q ss_pred             CCCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCce
Q 022962          119 CNSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYD  194 (289)
Q Consensus       119 ~~~~~~VLDiGcG--~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD  194 (289)
                      ++++.+||-.|++  .|..++.+++.. +++|+++|.+++.++.+.   +.+|.+.+  +..+-.++...  ....+.+|
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~---~~~g~~~~--~~~~~~~~~~~~~~~~~~~~d  220 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLV---EELGFDGA--IDYKNEDLAAGLKRECPKGID  220 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH---HTTCCSEE--EETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH---HHcCCCEE--EECCCHHHHHHHHHhcCCCce
Confidence            4468899999983  455555566654 569999999998766652   34565321  21111111100  00124699


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+-+.-.   ..++.+.+.|+++|+++..
T Consensus       221 ~vi~~~g~---~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          221 VFFDNVGG---EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             EEEESSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred             EEEECCCc---chHHHHHHHHhhCCEEEEE
Confidence            99977543   3677888999999998864

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.30  E-value=0.015  Score=52.41  Aligned_cols=93  Identities=14%  Similarity=0.122  Sum_probs=59.7

Q ss_pred             CCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCceE
Q 022962          121 SNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD~  195 (289)
                      ++.+||=.|+  |.|..++.+|+.. +++|+++|.+++..+.+++    +|.+.+  +..+ .++..   .......+|+
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~v--~~~~-~~~~~~v~~~~~~~g~Dv  230 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKS----VGADIV--LPLE-EGWAKAVREATGGAGVDM  230 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSEE--EESS-TTHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcEE--ecCc-hhHHHHHHHHhCCCCceE
Confidence            5889999997  3455666677665 5699999999988776665    465322  2222 22210   0001236999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-+.-.+   .++.+.+.|+++|++++.
T Consensus       231 vid~~g~~---~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          231 VVDPIGGP---AFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             EEESCC-----CHHHHHHTEEEEEEEEEC
T ss_pred             EEECCchh---HHHHHHHhhcCCCEEEEE
Confidence            99764332   456677899999999864

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.26  E-value=0.044  Score=48.61  Aligned_cols=86  Identities=13%  Similarity=0.168  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+||=+|+|+ |..++.+|+.. +++|+++| +++..+.+++    +|.+.  ++. |.+++      .+.+|+|+-.
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~----lGa~~--v~~-d~~~v------~~g~Dvv~d~  206 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAK----RGVRH--LYR-EPSQV------TQKYFAIFDA  206 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHH----HTEEE--EES-SGGGC------CSCEEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHH----cCCCE--EEc-CHHHh------CCCccEEEEC
Confidence            588999999953 66666777765 45999999 8888777754    56432  222 32222      3679999854


Q ss_pred             CcccHHHHHHHHccccccCeEEEEE
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .-..   .+..+.++|+++|+++..
T Consensus       207 ~g~~---~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          207 VNSQ---NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             ----------TTGGGEEEEEEEEEE
T ss_pred             CCch---hHHHHHHHhcCCCEEEEE
Confidence            2221   225678899999999876

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.22  E-value=0.014  Score=52.67  Aligned_cols=95  Identities=13%  Similarity=0.052  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCce
Q 022962          120 NSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD  194 (289)
                      +++.+||-.|+  |.|..++.+++.. +++|+++|.+++.++.+++    +|.+.+  +..+-.++..   .......+|
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~ga~~~--~d~~~~~~~~~~~~~~~~~~~d  237 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKA----LGADET--VNYTHPDWPKEVRRLTGGKGAD  237 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSEE--EETTSTTHHHHHHHHTTTTCEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCCEE--EcCCcccHHHHHHHHhCCCCce
Confidence            35889999998  4566666677665 5699999999988877753    454322  2111111100   000024699


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+.+.-.   ..++.+.+.|+++|+++..
T Consensus       238 ~vi~~~g~---~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          238 KVVDHTGA---LYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             EEEESSCS---SSHHHHHHHEEEEEEEEES
T ss_pred             EEEECCCH---HHHHHHHHhhccCCEEEEE
Confidence            99977542   3456667789999998764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.21  E-value=0.016  Score=52.69  Aligned_cols=95  Identities=18%  Similarity=0.193  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccc-ccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAE-TLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~-~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+||-+|+|+ |..++.+|+.. +++|+++|.+++.++.+++    +|.+.+  +..+-. ++...  ..+.+|+|+-
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~v--~~~~~~~~~~~~--~~~~~D~vid  249 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK----MGADHY--IATLEEGDWGEK--YFDTFDLIVV  249 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSEE--EEGGGTSCHHHH--SCSCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH----cCCCEE--EcCcCchHHHHH--hhcCCCEEEE
Confidence            488999999853 55555666654 5689999999988777654    565422  221111 11110  1146999996


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEE
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..-......++.+.++|+++|+++..
T Consensus       250 ~~g~~~~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          250 CASSLTDIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             CCSCSTTCCTTTGGGGEEEEEEEEEC
T ss_pred             CCCCCcHHHHHHHHHHhcCCCEEEEe
Confidence            53220012455677899999998753

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.10  E-value=0.034  Score=49.94  Aligned_cols=96  Identities=13%  Similarity=0.133  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec---cccccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAETLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~---d~~~~~~~~~~~~~fD~V  196 (289)
                      ++.+||=.|+|+ |..++.+|+......++++|.+++.++.+++    +|.+.  ++..   |..+..........+|+|
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~~--~i~~~~~~~~~~~~~~~~~~g~d~v  233 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAMQ--TFNSSEMSAPQMQSVLRELRFNQLI  233 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSE--EEETTTSCHHHHHHHHGGGCSSEEE
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCeE--EEeCCCCCHHHHHHhhcccCCcccc
Confidence            588999999864 4455566777766788999999988776654    67542  2221   111110000012458888


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +-..-.  ...++.+.++|++||++++.
T Consensus       234 ~d~~G~--~~~~~~~~~~l~~~G~~v~~  259 (346)
T 4a2c_A          234 LETAGV--PQTVELAVEIAGPHAQLALV  259 (346)
T ss_dssp             EECSCS--HHHHHHHHHHCCTTCEEEEC
T ss_pred             cccccc--cchhhhhhheecCCeEEEEE
Confidence            755322  34566777889999998864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.07  E-value=0.038  Score=49.79  Aligned_cols=96  Identities=14%  Similarity=0.042  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceEE
Q 022962          121 SNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG--~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~V  196 (289)
                      ++.+||-+|++  .|.....+++.. +++|+++|.+++.++.+++    +|.+ ..+-..+-+++...  ....+.+|+|
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~----~g~~-~~~d~~~~~~~~~~~~~~~~~~~D~v  242 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRS----IGGE-VFIDFTKEKDIVGAVLKATDGGAHGV  242 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHH----TTCC-EEEETTTCSCHHHHHHHHHTSCEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHH----cCCc-eEEecCccHhHHHHHHHHhCCCCCEE
Confidence            58899999983  344445555554 5699999999887766543    5543 11111111111100  0001269999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +.+.-.  ...++.+.+.|+++|+++..
T Consensus       243 i~~~g~--~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          243 INVSVS--EAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             EECSSC--HHHHHHHTTSEEEEEEEEEC
T ss_pred             EECCCc--HHHHHHHHHHHhcCCEEEEE
Confidence            987532  34678888999999998864

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.03  E-value=0.045  Score=49.34  Aligned_cols=96  Identities=14%  Similarity=0.060  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCCCCh--HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC--CCCcCC-CCceE
Q 022962          121 SNLKLVDVGTGAGL--PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG--KDVSFR-EQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGcG~G~--~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~--~~~~~~-~~fD~  195 (289)
                      ++.+||-.|+|+|.  .++.+++...+++|+++|.+++.++.+++    +|.+.+ +-..+ .+..  ...... +.+|+
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~----~g~~~~-~~~~~-~~~~~~~~~~~~~~~~d~  243 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGADYV-INASM-QDPLAEIRRITESKGVDA  243 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCSEE-EETTT-SCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCEE-ecCCC-ccHHHHHHHHhcCCCceE
Confidence            48899999997443  33444544425799999999988877644    454321 21111 1110  000011 47999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-++-.  ...++.+.+.|+++|+++..
T Consensus       244 vi~~~g~--~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          244 VIDLNNS--EKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             EEESCCC--HHHHTTGGGGEEEEEEEEEC
T ss_pred             EEECCCC--HHHHHHHHHHHhcCCEEEEE
Confidence            9977543  34677888999999998864

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.02  E-value=0.013  Score=52.79  Aligned_cols=95  Identities=15%  Similarity=0.054  Sum_probs=58.3

Q ss_pred             CCCCeEEEEcCCC--ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCce
Q 022962          120 NSNLKLVDVGTGA--GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG~--G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD  194 (289)
                      +++.+||-+|+|+  |..++.+|+.. +++|+++|.+++.++.+++    +|.+.  ++..+-.++..   .......+|
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lga~~--~~~~~~~~~~~~~~~~~~~~g~D  215 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLR----LGAAY--VIDTSTAPLYETVMELTNGIGAD  215 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSE--EEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----CCCcE--EEeCCcccHHHHHHHHhCCCCCc
Confidence            3588999999974  55556666654 5699999999988877765    46532  22211111110   000124799


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+-+.-...  +. ...+.|+++|+++..
T Consensus       216 vvid~~g~~~--~~-~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          216 AAIDSIGGPD--GN-ELAFSLRPNGHFLTI  242 (340)
T ss_dssp             EEEESSCHHH--HH-HHHHTEEEEEEEEEC
T ss_pred             EEEECCCChh--HH-HHHHHhcCCCEEEEE
Confidence            9997643221  22 233789999999865

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.99  E-value=0.018  Score=51.71  Aligned_cols=94  Identities=13%  Similarity=0.075  Sum_probs=59.1

Q ss_pred             CCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCceE
Q 022962          121 SNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD~  195 (289)
                      ++.+||-.|+  |.|..++.+|+.. +++|+++|.+++.++.+++    +|.+.  ++..+-.++..   .......+|+
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~--~~~~~~~~~~~~~~~~~~~~g~D~  220 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKE----YGAEY--LINASKEDILRQVLKFTNGKGVDA  220 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSE--EEETTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCcE--EEeCCCchHHHHHHHHhCCCCceE
Confidence            4889999995  3455555566664 5699999999988776654    56432  22211111110   0001246999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-+.-.   ..++.+.+.|+++|+++..
T Consensus       221 vid~~g~---~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          221 SFDSVGK---DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             EEECCGG---GGHHHHHHHEEEEEEEEEC
T ss_pred             EEECCCh---HHHHHHHHHhccCCEEEEE
Confidence            9977543   3566667889999999864

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.96  E-value=0.029  Score=50.48  Aligned_cols=95  Identities=18%  Similarity=0.098  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEEE
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~s  198 (289)
                      ++.+||-+|+|+ |..++.+|+.. +++|+++|.+++.++.++    ++|.+.  ++..+-+++.... ...+.+|+|+-
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~~--~~d~~~~~~~~~~~~~~~~~d~vid  236 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAK----ELGADL--VVNPLKEDAAKFMKEKVGGVHAAVV  236 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHH----HTTCSE--EECTTTSCHHHHHHHHHSSEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HCCCCE--EecCCCccHHHHHHHHhCCCCEEEE
Confidence            478999999953 55556666665 569999999998887765    356532  2211101110000 00036999987


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEE
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +.-.  ...++.+.+.|+++|+++..
T Consensus       237 ~~g~--~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          237 TAVS--KPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             SSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCC--HHHHHHHHHHhhcCCEEEEe
Confidence            6432  24566777889999998854

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.94  E-value=0.018  Score=52.02  Aligned_cols=96  Identities=23%  Similarity=0.185  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCceEE
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD~V  196 (289)
                      ++.+||-+|+|. |..++.+|+.....+|+++|.+++.++.+++    +|.+.+  +..+-+++..   .......+|+|
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga~~~--~~~~~~~~~~~v~~~~~g~g~D~v  240 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGADYV--INPFEEDVVKEVMDITDGNGVDVF  240 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTCSEE--ECTTTSCHHHHHHHHTTTSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEE--ECCCCcCHHHHHHHHcCCCCCCEE
Confidence            378999999853 5555566666543389999999988777654    455322  2211111100   00011369999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +-..-.  ...++.+.+.|+++|+++..
T Consensus       241 id~~g~--~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          241 LEFSGA--PKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             EECSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred             EECCCC--HHHHHHHHHHHhcCCEEEEE
Confidence            976432  24566677889999998764

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.93  E-value=0.018  Score=51.52  Aligned_cols=94  Identities=15%  Similarity=0.011  Sum_probs=59.3

Q ss_pred             CCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCceE
Q 022962          121 SNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD~  195 (289)
                      ++.+||-.|+  |.|..++.+|+.. +++|+++|.+++.++.+++    +|.+.  ++..+-.++..   .......+|+
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~~--~~~~~~~~~~~~~~~~~~~~g~Dv  212 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKA----LGAWE--TIDYSHEDVAKRVLELTDGKKCPV  212 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCSE--EEETTTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCCE--EEeCCCccHHHHHHHHhCCCCceE
Confidence            4889999983  3455555666654 5699999999998877754    45432  22211111100   0001247999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-+.-.   ..+..+.+.|+++|+++..
T Consensus       213 vid~~g~---~~~~~~~~~l~~~G~iv~~  238 (325)
T 3jyn_A          213 VYDGVGQ---DTWLTSLDSVAPRGLVVSF  238 (325)
T ss_dssp             EEESSCG---GGHHHHHTTEEEEEEEEEC
T ss_pred             EEECCCh---HHHHHHHHHhcCCCEEEEE
Confidence            9976533   3566778899999999875

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.89  E-value=0.046  Score=49.68  Aligned_cols=94  Identities=15%  Similarity=0.181  Sum_probs=61.3

Q ss_pred             CCCeEEEEc--CCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceEE
Q 022962          121 SNLKLVDVG--TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiG--cG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~V  196 (289)
                      ++.+||-.|  .|.|..++.+|+.. +++|+++|.+++.++.+++    +|.+.  ++..+-.++...  ......+|+|
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~~--~~~~~~~~~~~~~~~~~~~g~D~v  235 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKS----LGCDR--PINYKTEPVGTVLKQEYPEGVDVV  235 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSE--EEETTTSCHHHHHHHHCTTCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH----cCCcE--EEecCChhHHHHHHHhcCCCCCEE
Confidence            488999999  34566777777765 5699999999988777654    56532  222111111000  0012469999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +-+.-.   ..++.+.+.|+++|++++.
T Consensus       236 id~~g~---~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          236 YESVGG---AMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             EECSCT---HHHHHHHHHEEEEEEEEEC
T ss_pred             EECCCH---HHHHHHHHHHhcCCEEEEE
Confidence            976433   4677778899999998864

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=94.80  E-value=0.1  Score=44.55  Aligned_cols=102  Identities=19%  Similarity=0.084  Sum_probs=68.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC---CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~---p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.+||=.| |+|.+|..+++.+   .+.+|++++.+......+.+.++..+ .++.++.+|+.+...-.. +      -+
T Consensus         4 ~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            4 IHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC-CeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            56788777 5567788877643   46899999999877766666555544 368888999876421100 0      02


Q ss_pred             CceEEEEcCc------------cc-----------HHHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV------------AE-----------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~------------~~-----------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .+|+|+.++-            .+           ...+++.+.+.++++|++++..
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s  138 (276)
T 1wma_A           82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  138 (276)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence            6899998841            11           1345667777787788888764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.77  E-value=0.041  Score=49.63  Aligned_cols=95  Identities=15%  Similarity=0.071  Sum_probs=58.3

Q ss_pred             CCCeEEEEc-CC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVG-TG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiG-cG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~~~~~~~~~fD~V~  197 (289)
                      ++.+||=.| +| .|..++.+|+.. +++|+++|.+++.++.+++    +|.+.+--...+..+ +..  ...+.+|+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~--~~~~g~Dvv~  222 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKK----MGADIVLNHKESLLNQFKT--QGIELVDYVF  222 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHH----HTCSEEECTTSCHHHHHHH--HTCCCEEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcEEEECCccHHHHHHH--hCCCCccEEE
Confidence            478999884 43 355556666665 5699999999988877765    565322110111111 100  0124699998


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      -..-.  ...++.+.++|+++|+++..
T Consensus       223 d~~g~--~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          223 CTFNT--DMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             ESSCH--HHHHHHHHHHEEEEEEEEES
T ss_pred             ECCCc--hHHHHHHHHHhccCCEEEEE
Confidence            65432  34566777889999999753

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.70  E-value=0.045  Score=48.26  Aligned_cols=90  Identities=16%  Similarity=0.095  Sum_probs=59.6

Q ss_pred             CCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccc-cccCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ETLGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~-~~~~~~~~~~~~fD~V~  197 (289)
                      ++.+||-+|+  |.|..++.+|+.. +++|+++|.+++.++.+++    +|.+.+  +..+- .++...  . +.+|+|+
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~~--~~~~~~~~~~~~--~-~~~d~vi  194 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLA----LGAEEA--ATYAEVPERAKA--W-GGLDLVL  194 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHH----TTCSEE--EEGGGHHHHHHH--T-TSEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCCEE--EECCcchhHHHH--h-cCceEEE
Confidence            4889999997  3455666677665 4699999999988776643    565422  22111 122111  1 4699999


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      - .-.   ..++.+.+.|+++|+++..
T Consensus       195 d-~g~---~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          195 E-VRG---KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             E-CSC---TTHHHHHTTEEEEEEEEEC
T ss_pred             E-CCH---HHHHHHHHhhccCCEEEEE
Confidence            8 433   3667788999999998854

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.64  E-value=0.05  Score=48.82  Aligned_cols=98  Identities=10%  Similarity=0.001  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCce
Q 022962          119 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYD  194 (289)
Q Consensus       119 ~~~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD  194 (289)
                      ++++.+||-.|+  |.|..++.+++.. +++|+++|.+++.++.+++   ++|.+.+ +-..+..++...  ....+.+|
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~---~~g~~~~-~d~~~~~~~~~~~~~~~~~~~d  227 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKT---KFGFDDA-FNYKEESDLTAALKRCFPNGID  227 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH---TSCCSEE-EETTSCSCSHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---HcCCceE-EecCCHHHHHHHHHHHhCCCCc
Confidence            456889999997  3444555556554 5699999999987776642   3454321 111111111100  00124699


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+.+.-.   ..++.+.+.|+++|++++.
T Consensus       228 ~vi~~~g~---~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          228 IYFENVGG---KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             EEEESSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred             EEEECCCH---HHHHHHHHHHhcCCEEEEE
Confidence            99977533   3677888999999998864

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=94.59  E-value=0.013  Score=66.23  Aligned_cols=99  Identities=12%  Similarity=0.086  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-----CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccccc-CCCCcCCCCce
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-----DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL-GKDVSFREQYD  194 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-----~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~-~~~~~~~~~fD  194 (289)
                      +..+||+||.|+|..+..+.....     ..+.+..|+|+...+.+++..+.+   ++..-.-|..+. ..   ....||
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---di~~~~~d~~~~~~~---~~~~yd 1313 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---HVTQGQWDPANPAPG---SLGKAD 1313 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---TEEEECCCSSCCCC--------CC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---ccccccccccccccC---CCCcee
Confidence            356999999999976544433322     247889999987776677665543   233211132221 00   125799


Q ss_pred             EEEEcC----cccHHHHHHHHccccccCeEEEEEE
Q 022962          195 VAVARA----VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       195 ~V~sn~----~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +|++..    ..++...+..+.++|||||++++..
T Consensus      1314 lvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1314 LLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             EEEEECC--------------------CCEEEEEE
T ss_pred             EEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence            999763    3467888999999999999998754

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=94.54  E-value=1.7  Score=44.82  Aligned_cols=119  Identities=13%  Similarity=0.068  Sum_probs=72.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCC--EEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC------------CC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDW--KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG------------KD-  186 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~--~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~------------~~-  186 (289)
                      ..+++|+-||.|.+++.+.++  +.  -|.|+|+++.+++..+.|.     .+..++.+|+.++.            .. 
T Consensus       540 ~l~~iDLFaG~GGlslGl~~A--G~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~~  612 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQA--GISDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQR  612 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHH--TSEEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCCB
T ss_pred             CCeEEEeccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhhh
Confidence            458999999999998888766  44  5789999999888776652     24566777765431            00 


Q ss_pred             CcCCCCceEEEEcC------cc---------c-----HHHHHHHHccccccCeEEEEEE--c---CCcHHHHHHHHHHHH
Q 022962          187 VSFREQYDVAVARA------VA---------E-----MRILAEYCLPLVRVGGLFVAAK--G---HDPQEEVKNSERAVQ  241 (289)
Q Consensus       187 ~~~~~~fD~V~sn~------~~---------~-----~~~ll~~~~~~LkpgG~l~~~~--g---~~~~~ei~~~~~~l~  241 (289)
                      ....+.+|+|+...      .+         +     +..+++. ...++|.- ++++-  |   ......+..+.+.+.
T Consensus       613 lp~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~ri-v~~~rPk~-~llENV~glls~~~~~~~~~i~~~L~  690 (1002)
T 3swr_A          613 LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSY-CDYYRPRF-FLLENVRNFVSFKRSMVLKLTLRCLV  690 (1002)
T ss_dssp             CCCTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHH-HHHHCCSE-EEEEEEGGGGTTGGGHHHHHHHHHHH
T ss_pred             cccCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHHH-HHHhCCCE-EEEeccHHHhccCcchHHHHHHHHHH
Confidence            00124689998762      11         0     1122322 23456753 34442  2   122345667777888


Q ss_pred             HhCCeEeE
Q 022962          242 LMGASLLQ  249 (289)
Q Consensus       242 ~~g~~~~~  249 (289)
                      ..|+.+..
T Consensus       691 ~lGY~v~~  698 (1002)
T 3swr_A          691 RMGYQCTF  698 (1002)
T ss_dssp             HHTCEEEE
T ss_pred             hcCCeEEE
Confidence            99997643

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.49  E-value=0.02  Score=51.06  Aligned_cols=94  Identities=17%  Similarity=0.080  Sum_probs=57.4

Q ss_pred             CCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCceE
Q 022962          121 SNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD~  195 (289)
                      ++.+||-.|+  |.|...+.+++.. +++|+++|.+++.++.+++    +|.+ .. +..+-++...   .......+|+
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~----~g~~-~~-~~~~~~~~~~~~~~~~~~~~~D~  212 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGAW-QV-INYREEDLVERLKEITGGKKVRV  212 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCS-EE-EETTTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCC-EE-EECCCccHHHHHHHHhCCCCceE
Confidence            4789999994  3344444455443 5699999999988777654    4543 21 2111111100   0001236999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+.++-   ...++.+.+.|+++|+++..
T Consensus       213 vi~~~g---~~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          213 VYDSVG---RDTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             EEECSC---GGGHHHHHHTEEEEEEEEEC
T ss_pred             EEECCc---hHHHHHHHHHhcCCCEEEEE
Confidence            998754   34567777899999998864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.42  E-value=0.17  Score=39.18  Aligned_cols=111  Identities=16%  Similarity=0.020  Sum_probs=65.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~s  198 (289)
                      ..+|+=+||  |.+|..+++..  .+.+|+++|.+++.++.+++    .   .+.++.+|..+..... ..-..+|+|++
T Consensus         7 ~~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~---g~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (140)
T 3fwz_A            7 CNHALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R---GVRAVLGNAANEEIMQLAHLECAKWLIL   77 (140)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred             CCCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c---CCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence            457888887  56777776543  46799999999988776654    2   4667888876532100 00146899886


Q ss_pred             cCcccH-HHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeE
Q 022962          199 RAVAEM-RILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASL  247 (289)
Q Consensus       199 n~~~~~-~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~  247 (289)
                      ..-.+. ...+-...+.+.|+..++..... . +.    .+.++..|.+.
T Consensus        78 ~~~~~~~n~~~~~~a~~~~~~~~iiar~~~-~-~~----~~~l~~~G~d~  121 (140)
T 3fwz_A           78 TIPNGYEAGEIVASARAKNPDIEIIARAHY-D-DE----VAYITERGANQ  121 (140)
T ss_dssp             CCSCHHHHHHHHHHHHHHCSSSEEEEEESS-H-HH----HHHHHHTTCSE
T ss_pred             ECCChHHHHHHHHHHHHHCCCCeEEEEECC-H-HH----HHHHHHCCCCE
Confidence            533322 22222334556778777654422 2 22    12455678753

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=94.37  E-value=0.038  Score=49.50  Aligned_cols=94  Identities=12%  Similarity=-0.010  Sum_probs=58.6

Q ss_pred             CCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCceE
Q 022962          121 SNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD~  195 (289)
                      ++.+||-.|+  |.|...+.+++.. +++|+++|.+++.++.+++    +|.+ . ++..+-.+...   .......+|+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~g~~-~-~~d~~~~~~~~~i~~~~~~~~~d~  217 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARK----LGCH-H-TINYSTQDFAEVVREITGGKGVDV  217 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCS-E-EEETTTSCHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCC-E-EEECCCHHHHHHHHHHhCCCCCeE
Confidence            4789999996  4455555566554 5699999999988777654    4543 2 12111111100   0001246999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+.++-.   ..++.+.+.|+++|+++..
T Consensus       218 vi~~~g~---~~~~~~~~~l~~~G~iv~~  243 (333)
T 1wly_A          218 VYDSIGK---DTLQKSLDCLRPRGMCAAY  243 (333)
T ss_dssp             EEECSCT---TTHHHHHHTEEEEEEEEEC
T ss_pred             EEECCcH---HHHHHHHHhhccCCEEEEE
Confidence            9977543   4566777899999998764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=94.33  E-value=0.032  Score=50.53  Aligned_cols=95  Identities=16%  Similarity=0.115  Sum_probs=59.0

Q ss_pred             CCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceE
Q 022962          120 NSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDV  195 (289)
Q Consensus       120 ~~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~  195 (289)
                      +++.+||-.|.  |.|..++.+|+.. +++|+++|.+++.++.+++    +|.+.+  +..+-.++...  ....+.+|+
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~--~~~~~~~~~~~~~~~~~~g~Dv  238 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACER----LGAKRG--INYRSEDFAAVIKAETGQGVDI  238 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSEE--EETTTSCHHHHHHHHHSSCEEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCCEE--EeCCchHHHHHHHHHhCCCceE
Confidence            35889999853  2455556666665 5699999999998877764    464322  22111111100  000247999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-+.-..   .++.+.+.|+++|+++..
T Consensus       239 vid~~g~~---~~~~~~~~l~~~G~iv~~  264 (353)
T 4dup_A          239 ILDMIGAA---YFERNIASLAKDGCLSII  264 (353)
T ss_dssp             EEESCCGG---GHHHHHHTEEEEEEEEEC
T ss_pred             EEECCCHH---HHHHHHHHhccCCEEEEE
Confidence            99775332   456667899999998864

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=94.22  E-value=0.044  Score=49.65  Aligned_cols=95  Identities=13%  Similarity=0.100  Sum_probs=58.0

Q ss_pred             CCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCce
Q 022962          120 NSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG--~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD  194 (289)
                      +++.+||-.|++  .|..++.+++.. +++|+++|.+++.++.++    .+|.+.  ++..+-.+...   .......+|
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~----~~ga~~--~~d~~~~~~~~~~~~~~~~~~~D  241 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVL----QNGAHE--VFNHREVNYIDKIKKYVGEKGID  241 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCSE--EEETTSTTHHHHHHHHHCTTCEE
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHH----HcCCCE--EEeCCCchHHHHHHHHcCCCCcE
Confidence            358899999973  344445555554 579999999998877554    455432  12111111100   000123699


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+.++-.   ..+..+.++|+++|+++..
T Consensus       242 ~vi~~~G~---~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          242 IIIEMLAN---VNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             EEEESCHH---HHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCh---HHHHHHHHhccCCCEEEEE
Confidence            99987543   2456778899999998764

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=94.18  E-value=0.42  Score=43.11  Aligned_cols=101  Identities=14%  Similarity=0.222  Sum_probs=71.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC---------------------CCCEEEEeccc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ---------------------LLNVQIVRGRA  180 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~---------------------l~ni~~~~~d~  180 (289)
                      ...|+.+|||....+..+....++..++-||. ++.++.-++.+.+.+                     -++.+++.+|+
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL  176 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  176 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence            46899999999999999887667788888887 777777777666541                     24789999999


Q ss_pred             cccCC------CCcCCCCceEEEEcCc------ccHHHHHHHHccccccCeEEEEE
Q 022962          181 ETLGK------DVSFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       181 ~~~~~------~~~~~~~fD~V~sn~~------~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .+..-      .....+...++++-.+      .....+++.+.... |+|.++++
T Consensus       177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~  231 (334)
T 1rjd_A          177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISY  231 (334)
T ss_dssp             TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEE
T ss_pred             CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEE
Confidence            87421      0001245678887643      34577888777766 78887644

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.13  E-value=0.23  Score=42.96  Aligned_cols=75  Identities=8%  Similarity=-0.079  Sum_probs=49.7

Q ss_pred             EEEEeccccccCCCCcCCCCceEEEEcC---cc---------------cHHHHHHHHccccccCeEEEEEEcCCcHHHHH
Q 022962          173 VQIVRGRAETLGKDVSFREQYDVAVARA---VA---------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVK  234 (289)
Q Consensus       173 i~~~~~d~~~~~~~~~~~~~fD~V~sn~---~~---------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~  234 (289)
                      .+++++|..+.-.. ..+++||+|++.+   ..               .+..+++++.++|+|||.+++..+..   +..
T Consensus         5 ~~l~~gD~~~~l~~-l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~---~~~   80 (260)
T 1g60_A            5 NKIHQMNCFDFLDQ-VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPF---NCA   80 (260)
T ss_dssp             SSEEECCHHHHHHH-SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHH---HHH
T ss_pred             CeEEechHHHHHHh-ccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcH---HHH
Confidence            45678887553211 1136899999973   11               34677888899999999999876432   233


Q ss_pred             HHHHHHHHhCCeEeEEe
Q 022962          235 NSERAVQLMGASLLQLC  251 (289)
Q Consensus       235 ~~~~~l~~~g~~~~~~~  251 (289)
                      .+...+.+.||......
T Consensus        81 ~~~~~~~~~gf~~~~~i   97 (260)
T 1g60_A           81 FICQYLVSKGMIFQNWI   97 (260)
T ss_dssp             HHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHhhccceeEEE
Confidence            44456678899877654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.11  E-value=0.044  Score=49.24  Aligned_cols=61  Identities=13%  Similarity=0.057  Sum_probs=46.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccccc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL  183 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~  183 (289)
                      .++..|||--||+|..++...+.  +.+.+|+|+++..++.++++++..+.+ ...++.|+.++
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~~~~~~-~~~~~~~~~~i  311 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDNNIS-EEKITDIYNRI  311 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCSCSC-HHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhcccc-hHHHHHHHHHH
Confidence            45889999999999987775544  679999999999999999887766542 44445555544

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=94.11  E-value=0.14  Score=45.33  Aligned_cols=90  Identities=14%  Similarity=0.187  Sum_probs=59.3

Q ss_pred             eEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          124 KLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       124 ~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +||=.|+  |.|..++.+|+.. +++|+++|.+++..+.+++    +|.+.+ +-..+......  ...+.+|+|+-..-
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~v-i~~~~~~~~~~--~~~~~~d~v~d~~g  220 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKS----LGANRI-LSRDEFAESRP--LEKQLWAGAIDTVG  220 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHH----HTCSEE-EEGGGSSCCCS--SCCCCEEEEEESSC
T ss_pred             eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCCEE-EecCCHHHHHh--hcCCCccEEEECCC
Confidence            4998887  4566777778776 4699999999998887765    565422 21222211111  11357999885532


Q ss_pred             ccHHHHHHHHccccccCeEEEEE
Q 022962          202 AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       202 ~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .   ..++.+.+.|+++|+++..
T Consensus       221 ~---~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          221 D---KVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             H---HHHHHHHHTEEEEEEEEEC
T ss_pred             c---HHHHHHHHHHhcCCEEEEE
Confidence            2   2778888999999999864

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.11  E-value=0.045  Score=49.57  Aligned_cols=93  Identities=15%  Similarity=0.035  Sum_probs=55.4

Q ss_pred             CeEEEEcCCC-ChHH-HHHH-HHCCCCEEEEEeCChH---HHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          123 LKLVDVGTGA-GLPG-LVLA-IACPDWKVTLLESMNK---RCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       123 ~~VLDiGcG~-G~~~-l~la-~~~p~~~V~~iD~s~~---~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      .+||-+|+|+ |..+ +.+| +.....+|+++|.+++   ..+.++    ++|.+.+   ..+-+++..-....+.||+|
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~----~lGa~~v---~~~~~~~~~i~~~~gg~Dvv  246 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE----ELDATYV---DSRQTPVEDVPDVYEQMDFI  246 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH----HTTCEEE---ETTTSCGGGHHHHSCCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH----HcCCccc---CCCccCHHHHHHhCCCCCEE
Confidence            8999999843 4444 5556 5543334999999987   777665    4565322   11111111000001369999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +-..-.  ...++.+.+.|+++|+++..
T Consensus       247 id~~g~--~~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          247 YEATGF--PKHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             EECSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred             EECCCC--hHHHHHHHHHHhcCCEEEEE
Confidence            855322  23566777899999998864

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.82  E-value=0.26  Score=42.16  Aligned_cols=103  Identities=9%  Similarity=0.030  Sum_probs=70.4

Q ss_pred             CCeEEEEcCC--CChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------C
Q 022962          122 NLKLVDVGTG--AGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------R  190 (289)
Q Consensus       122 ~~~VLDiGcG--~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~  190 (289)
                      +.++|=.|++  +| +|..+|+.+  .+.+|++++.++...+.+.+..+..+-.++.++..|+.+...-.. +      -
T Consensus         7 ~k~vlVTGasg~~G-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            7 GRNIVVMGVANKRS-IAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TCEEEEECCCSTTS-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCc-HHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            6789999987  44 466666543  478999999998777777776666655468999999886431100 0      1


Q ss_pred             CCceEEEEcCc--------c--------c-----------HHHHHHHHccccccCeEEEEEE
Q 022962          191 EQYDVAVARAV--------A--------E-----------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       191 ~~fD~V~sn~~--------~--------~-----------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +..|.++.|+-        .        .           .-.+++.+.+.++++|.+++..
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  147 (266)
T 3oig_A           86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT  147 (266)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence            36899998741        0        1           1235677788888899998765

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.73  E-value=0.086  Score=47.35  Aligned_cols=48  Identities=8%  Similarity=-0.004  Sum_probs=38.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCh---HHHHHHHHHHHHcC
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMN---KRCVFLEHAVSLTQ  169 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~---~~l~~a~~~~~~~~  169 (289)
                      .++..|||--||+|..++...+.  +.+.+|+|+++   ..++.+++++++.+
T Consensus       241 ~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          241 HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            35889999999999988776665  67999999999   99999988876654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.69  E-value=0.19  Score=43.09  Aligned_cols=78  Identities=17%  Similarity=0.109  Sum_probs=54.9

Q ss_pred             CCeEEEEcC-CCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGT-GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGc-G~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.+||=.|+ |+|+ |..+++.+  .+.+|+++|.+...++.+.+..+..+..++.++..|+.+...-.. .      -+
T Consensus        22 ~k~vlITGasg~GI-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  100 (266)
T 3o38_A           22 GKVVLVTAAAGTGI-GSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAG  100 (266)
T ss_dssp             TCEEEESSCSSSSH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCch-HHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence            678888887 6674 66665542  468999999999888777776665554579999999986431100 0      13


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus       101 ~id~li~~A  109 (266)
T 3o38_A          101 RLDVLVNNA  109 (266)
T ss_dssp             CCCEEEECC
T ss_pred             CCcEEEECC
Confidence            689999984

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=93.68  E-value=0.08  Score=47.15  Aligned_cols=93  Identities=14%  Similarity=0.156  Sum_probs=56.8

Q ss_pred             CC-eEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccc-cccCCCCcCCCCceEEE
Q 022962          122 NL-KLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~-~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~-~~~~~~~~~~~~fD~V~  197 (289)
                      +. +||-.|+  |.|..++.+|+.. +++|+++|.+++.++.+++    +|.+.+ +-..+. .+.... ...+.+|+|+
T Consensus       149 g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~~~~-~~~~~~d~vi  221 (328)
T 1xa0_A          149 ERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRV----LGAKEV-LAREDVMAERIRP-LDKQRWAAAV  221 (328)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHH----TTCSEE-EECC----------CCSCCEEEEE
T ss_pred             CCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH----cCCcEE-EecCCcHHHHHHH-hcCCcccEEE
Confidence            53 7999997  4456666677765 4689999999887776653    565422 111111 110000 0124699998


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      -+.-..   .++.+.+.|+++|+++..
T Consensus       222 d~~g~~---~~~~~~~~l~~~G~~v~~  245 (328)
T 1xa0_A          222 DPVGGR---TLATVLSRMRYGGAVAVS  245 (328)
T ss_dssp             ECSTTT---THHHHHHTEEEEEEEEEC
T ss_pred             ECCcHH---HHHHHHHhhccCCEEEEE
Confidence            664322   456677899999998864

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=93.59  E-value=0.055  Score=48.93  Aligned_cols=95  Identities=8%  Similarity=-0.013  Sum_probs=57.3

Q ss_pred             CCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCce
Q 022962          120 NSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG--~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD  194 (289)
                      +++.+||-.|++  .|..++.+++.. +++|+++|.+++.++.+++    +|.+ . ++..+-.+...   .......+|
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~-~-~~~~~~~~~~~~~~~~~~~~~~d  233 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEK----LGAA-A-GFNYKKEDFSEATLKFTKGAGVN  233 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----HTCS-E-EEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCc-E-EEecCChHHHHHHHHHhcCCCce
Confidence            358899999853  344444555554 5799999999988877643    4543 2 12111111100   000124699


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+-++-..   .++.+.+.|+++|++++.
T Consensus       234 ~vi~~~G~~---~~~~~~~~l~~~G~iv~~  260 (354)
T 2j8z_A          234 LILDCIGGS---YWEKNVNCLALDGRWVLY  260 (354)
T ss_dssp             EEEESSCGG---GHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCch---HHHHHHHhccCCCEEEEE
Confidence            999875432   355667889999998864

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=93.38  E-value=0.066  Score=48.19  Aligned_cols=92  Identities=11%  Similarity=0.128  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCce
Q 022962          120 NSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD  194 (289)
                      +++.+||=+|+  |.|..++.+|+.. +++|+++ .+++.++.+++    +|.+.   +. +-.++..   .......+|
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~----lGa~~---i~-~~~~~~~~~~~~~~~~g~D  218 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRD----LGATP---ID-ASREPEDYAAEHTAGQGFD  218 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHH----HTSEE---EE-TTSCHHHHHHHHHTTSCEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHH----cCCCE---ec-cCCCHHHHHHHHhcCCCce
Confidence            35889999994  3466666677665 5699999 78887766644    56432   22 2222110   000124699


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+-+.-.   ..+..+.+.|+++|+++..
T Consensus       219 ~vid~~g~---~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          219 LVYDTLGG---PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             EEEESSCT---HHHHHHHHHEEEEEEEEES
T ss_pred             EEEECCCc---HHHHHHHHHHhcCCeEEEE
Confidence            99866432   4667777899999999864

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.38  E-value=0.32  Score=42.05  Aligned_cols=102  Identities=15%  Similarity=0.106  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC------------hHHHHHHHHHHHHcCCCCEEEEeccccccCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM------------NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV  187 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s------------~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~  187 (289)
                      +.+||=.|+++| +|..+|+.+  .+.+|+.+|.+            .+.++.+....+..+. ++.++..|+.+...-.
T Consensus        10 gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~   87 (287)
T 3pxx_A           10 DKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR-KAYTAEVDVRDRAAVS   87 (287)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHHHH
T ss_pred             CCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHH
Confidence            678998998766 577776553  46899999987            6666666666665553 6889999987643110


Q ss_pred             c-C------CCCceEEEEcCc----------cc-----------HHHHHHHHccccccCeEEEEEE
Q 022962          188 S-F------REQYDVAVARAV----------AE-----------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       188 ~-~------~~~fD~V~sn~~----------~~-----------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      . .      -+..|+++.|+-          .+           .-.+++.+.+.++.+|.++...
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           88 RELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence            0 0      136899998841          11           2345567778888889988654

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=93.34  E-value=0.22  Score=47.26  Aligned_cols=122  Identities=12%  Similarity=0.032  Sum_probs=73.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------------
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------------  187 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~-V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------------  187 (289)
                      ..+++|+-||.|.+++.+...  +.+ |.++|+++.+++..+.|...  ..+..++++|+.++....             
T Consensus        88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhh
Confidence            468999999999988777654  444 89999999988877765321  123456778988764210             


Q ss_pred             -cCCCCceEEEEcC------cc----------------c-HHHHHHHHc---cccccCeEEEEEE--cC---CcHHHHHH
Q 022962          188 -SFREQYDVAVARA------VA----------------E-MRILAEYCL---PLVRVGGLFVAAK--GH---DPQEEVKN  235 (289)
Q Consensus       188 -~~~~~fD~V~sn~------~~----------------~-~~~ll~~~~---~~LkpgG~l~~~~--g~---~~~~ei~~  235 (289)
                       .....+|+|+...      .+                + ...++.++.   ..++|. .|+++-  |-   +....+..
T Consensus       164 ~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk-~fvlENV~gl~s~~~g~~f~~  242 (482)
T 3me5_A          164 RQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPA-MFVLENVKNLKSHDKGKTFRI  242 (482)
T ss_dssp             HHHSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCCS-EEEEEEETTTTTGGGGHHHHH
T ss_pred             hhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCCc-EEEEeCcHHHhcccCCcHHHH
Confidence             0013589998651      11                0 001232222   235674 444442  22   22356677


Q ss_pred             HHHHHHHhCCeEe
Q 022962          236 SERAVQLMGASLL  248 (289)
Q Consensus       236 ~~~~l~~~g~~~~  248 (289)
                      +.+.|...|+.+.
T Consensus       243 i~~~L~~lGY~v~  255 (482)
T 3me5_A          243 IMQTLDELGYDVA  255 (482)
T ss_dssp             HHHHHHHTTEEET
T ss_pred             HHHHHhcCCcEEE
Confidence            7888889998764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.31  E-value=0.027  Score=50.72  Aligned_cols=93  Identities=16%  Similarity=0.093  Sum_probs=56.7

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCceEEE
Q 022962          122 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD~V~  197 (289)
                      +.+||-+|+|. |..++.+|+.....+|+++|.+++.++.+++    + .+  .++..+-+++..   ... ...+|+|+
T Consensus       165 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----l-a~--~v~~~~~~~~~~~~~~~~-~~g~D~vi  236 (343)
T 2dq4_A          165 GKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP----Y-AD--RLVNPLEEDLLEVVRRVT-GSGVEVLL  236 (343)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT----T-CS--EEECTTTSCHHHHHHHHH-SSCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----h-HH--hccCcCccCHHHHHHHhc-CCCCCEEE
Confidence            78999999853 5555666766533389999999988776654    2 21  122111111100   001 24699998


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      -..-.  ...++.+.+.|+++|+++..
T Consensus       237 d~~g~--~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          237 EFSGN--EAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             ECSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred             ECCCC--HHHHHHHHHHHhcCCEEEEE
Confidence            66422  23566777889999998764

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.29  E-value=0.54  Score=40.29  Aligned_cols=103  Identities=15%  Similarity=0.063  Sum_probs=69.8

Q ss_pred             CCeEEEEcCCC--ChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCC
Q 022962          122 NLKLVDVGTGA--GLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFR  190 (289)
Q Consensus       122 ~~~VLDiGcG~--G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~  190 (289)
                      ++++|=-|+++  | +|..+|+.+  .+++|+.+|.+++.++.+.+.+++.+-.++.+++.|+.+...-.       ..-
T Consensus         6 gK~alVTGaa~~~G-IG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            6 NKTYVIMGIANKRS-IAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TCEEEEECCCSTTC-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCch-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            78899889654  5 466666543  47899999999988888888777776557888899987642100       001


Q ss_pred             CCceEEEEcCc----------------ccH-----------HHHHHHHccccccCeEEEEEE
Q 022962          191 EQYDVAVARAV----------------AEM-----------RILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       191 ~~fD~V~sn~~----------------~~~-----------~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +..|.++.|+-                .++           -.+.+.+...++.+|.++...
T Consensus        85 G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis  146 (256)
T 4fs3_A           85 GNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT  146 (256)
T ss_dssp             CCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred             CCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence            47899998830                011           122345567788899998765

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=93.19  E-value=0.085  Score=47.61  Aligned_cols=97  Identities=9%  Similarity=0.129  Sum_probs=58.5

Q ss_pred             CCCC--CeEEEEcCC--CChHHHHHHHHCCCC-EEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCC
Q 022962          119 CNSN--LKLVDVGTG--AGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFRE  191 (289)
Q Consensus       119 ~~~~--~~VLDiGcG--~G~~~l~la~~~p~~-~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~  191 (289)
                      ++++  .+||-.|++  .|...+.+++.. ++ +|+++|.+++.++.+++   .+|.+ . ++..+-.++...  ....+
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~---~~g~~-~-~~d~~~~~~~~~~~~~~~~  229 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTS---ELGFD-A-AINYKKDNVAEQLRESCPA  229 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH---TSCCS-E-EEETTTSCHHHHHHHHCTT
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHH---HcCCc-e-EEecCchHHHHHHHHhcCC
Confidence            3457  899999983  344444455554 55 99999999877665543   25543 2 121111111000  00112


Q ss_pred             CceEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          192 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       192 ~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .+|+|+-++-.   ..++.+.++|+++|++++.
T Consensus       230 ~~d~vi~~~G~---~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          230 GVDVYFDNVGG---NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             CEEEEEESCCH---HHHHHHHHTEEEEEEEEEC
T ss_pred             CCCEEEECCCH---HHHHHHHHHhccCcEEEEE
Confidence            69999987642   5677888899999998864

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=93.15  E-value=0.22  Score=43.80  Aligned_cols=77  Identities=17%  Similarity=0.081  Sum_probs=55.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~  192 (289)
                      +.+||=.|+++| +|..+++.+  .+.+|+++|.++..++.+.+..+..+. ++.++..|+.+...-.. .      .+.
T Consensus        31 gk~vlVTGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           31 GRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            678999998765 577776653  468999999999888877776666554 68899999887432100 0      136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus       109 id~lvnnA  116 (301)
T 3tjr_A          109 VDVVFSNA  116 (301)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999984

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=92.99  E-value=0.12  Score=46.02  Aligned_cols=93  Identities=16%  Similarity=0.158  Sum_probs=57.9

Q ss_pred             CC-eEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccc-cccCCCCcCCCCceEEE
Q 022962          122 NL-KLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~-~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~-~~~~~~~~~~~~fD~V~  197 (289)
                      +. +||=.|+  |.|..++.+|+.. +++|+++|.+++.++.+++    +|.+.+ +-..+. .+.... ...+.+|+|+
T Consensus       150 g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~----lGa~~v-~~~~~~~~~~~~~-~~~~~~d~vi  222 (330)
T 1tt7_A          150 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQ----LGASEV-ISREDVYDGTLKA-LSKQQWQGAV  222 (330)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHH----HTCSEE-EEHHHHCSSCCCS-SCCCCEEEEE
T ss_pred             CCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCcEE-EECCCchHHHHHH-hhcCCccEEE
Confidence            53 7999997  3455556666654 4689999999887777654    565432 111111 110000 1124699998


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      -..-.   ..+..+.+.|+++|+++..
T Consensus       223 d~~g~---~~~~~~~~~l~~~G~iv~~  246 (330)
T 1tt7_A          223 DPVGG---KQLASLLSKIQYGGSVAVS  246 (330)
T ss_dssp             ESCCT---HHHHHHHTTEEEEEEEEEC
T ss_pred             ECCcH---HHHHHHHHhhcCCCEEEEE
Confidence            66433   2577788999999998864

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=92.90  E-value=0.26  Score=42.06  Aligned_cols=77  Identities=12%  Similarity=0.022  Sum_probs=51.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeC-ChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCC------C
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLES-MNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFR------E  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~-s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~------~  191 (289)
                      +.+||=.|+ +|.+|..+++.+  .+.+|++++. ++..++...+..+..+. ++.++.+|+.+...-. .+.      +
T Consensus        21 ~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~   98 (274)
T 1ja9_A           21 GKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSHFG   98 (274)
T ss_dssp             TCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            678888886 566788877653  4679999998 77766655555555443 6888899987642110 000      2


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+|+.++
T Consensus        99 ~~d~vi~~A  107 (274)
T 1ja9_A           99 GLDFVMSNS  107 (274)
T ss_dssp             CEEEEECCC
T ss_pred             CCCEEEECC
Confidence            689999874

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=92.72  E-value=0.61  Score=39.81  Aligned_cols=99  Identities=19%  Similarity=0.146  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-------CCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-------~~~~  192 (289)
                      +.++|=.|+++| +|..+|+.+  .+++|+++|.+++.++.+.+.   .+ .++.++..|+.+...-..       .-+.
T Consensus         8 gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (255)
T 4eso_A            8 GKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREE---FG-PRVHALRSDIADLNEIAVLGAAAGQTLGA   82 (255)
T ss_dssp             TCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---HG-GGEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC-CcceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            678999997665 577776653  468999999998876655443   23 268889999876432100       0137


Q ss_pred             ceEEEEcCc------------cc-----------HHHHHHHHccccccCeEEEEEE
Q 022962          193 YDVAVARAV------------AE-----------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       193 fD~V~sn~~------------~~-----------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .|+++.|+-            .+           .-.+.+.+.+.++.+|.++...
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  138 (255)
T 4eso_A           83 IDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS  138 (255)
T ss_dssp             EEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence            899998840            01           2345667778888899988764

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=92.41  E-value=0.15  Score=46.22  Aligned_cols=91  Identities=18%  Similarity=0.169  Sum_probs=55.4

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCh---HHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEE
Q 022962          122 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMN---KRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~---~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V  196 (289)
                      +.+||-+|+|. |..++.+|+.. +++|+++|.++   +.++.+++    +|.+.+   ..+  ++.... ...+.+|+|
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~----~ga~~v---~~~--~~~~~~~~~~~~~d~v  250 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEE----TKTNYY---NSS--NGYDKLKDSVGKFDVI  250 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHH----HTCEEE---ECT--TCSHHHHHHHCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHH----hCCcee---chH--HHHHHHHHhCCCCCEE
Confidence            78999999832 33344455544 45999999998   77666543    454322   111  111000 001469999


Q ss_pred             EEcCcccHHHHH-HHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILA-EYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll-~~~~~~LkpgG~l~~~  224 (289)
                      +.+.-..  ..+ +.+.+.|+++|+++..
T Consensus       251 id~~g~~--~~~~~~~~~~l~~~G~iv~~  277 (366)
T 2cdc_A          251 IDATGAD--VNILGNVIPLLGRNGVLGLF  277 (366)
T ss_dssp             EECCCCC--THHHHHHGGGEEEEEEEEEC
T ss_pred             EECCCCh--HHHHHHHHHHHhcCCEEEEE
Confidence            9775321  234 7778899999998864

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=92.40  E-value=3.7  Score=43.63  Aligned_cols=119  Identities=13%  Similarity=0.084  Sum_probs=71.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCC--EEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC------------CC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDW--KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG------------KD-  186 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~--~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~------------~~-  186 (289)
                      ..+++|+-||.|.+++.+.++  +.  -|.++|+++.+++..+.|.     .+..++++|+.++.            .. 
T Consensus       851 ~l~viDLFsG~GGlslGfe~A--G~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~~~  923 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQA--GISETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLGQR  923 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHT--TSEEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred             CceEEecccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhhhh
Confidence            458999999999998887754  43  4789999999988777752     24456666665321            00 


Q ss_pred             CcCCCCceEEEEcC------cc---------c-----HHHHHHHHccccccCeEEEEEE--c---CCcHHHHHHHHHHHH
Q 022962          187 VSFREQYDVAVARA------VA---------E-----MRILAEYCLPLVRVGGLFVAAK--G---HDPQEEVKNSERAVQ  241 (289)
Q Consensus       187 ~~~~~~fD~V~sn~------~~---------~-----~~~ll~~~~~~LkpgG~l~~~~--g---~~~~~ei~~~~~~l~  241 (289)
                      ....+.+|+|+...      .+         +     +..+++. ...++|. .|+++-  |   ......+..+...+.
T Consensus       924 lp~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~lri-v~~~rPk-~fv~ENV~glls~~~g~~~~~il~~L~ 1001 (1330)
T 3av4_A          924 LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSY-CDYYRPR-FFLLENVRNFVSYRRSMVLKLTLRCLV 1001 (1330)
T ss_dssp             CCCTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHHHH-HHHHCCS-EEEEEEEGGGGTTTTTHHHHHHHHHHH
T ss_pred             ccccCccceEEecCCCcccccccccccccccchhhHHHHHHHHH-HHHhcCc-EEEEeccHHHhccCccHHHHHHHHHHH
Confidence            00124689999751      11         1     1122322 2346676 444442  2   122344566777888


Q ss_pred             HhCCeEeE
Q 022962          242 LMGASLLQ  249 (289)
Q Consensus       242 ~~g~~~~~  249 (289)
                      ..|+.+..
T Consensus      1002 ~lGY~v~~ 1009 (1330)
T 3av4_A         1002 RMGYQCTF 1009 (1330)
T ss_dssp             HHTCEEEE
T ss_pred             hcCCeeeE
Confidence            99997643

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=92.30  E-value=0.32  Score=44.49  Aligned_cols=92  Identities=12%  Similarity=0.053  Sum_probs=66.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC--EEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n--i~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +.+||.|+.+-|.++..++..    .++.+.=|--....++.|++.+++++  +++... .++.      ...||+|+..
T Consensus        39 ~~~~~~~~d~~gal~~~~~~~----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~------~~~~~~v~~~  107 (375)
T 4dcm_A           39 RGPVLILNDAFGALSCALAEH----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TADY------PQQPGVVLIK  107 (375)
T ss_dssp             CSCEEEECCSSSHHHHHTGGG----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSCC------CSSCSEEEEE
T ss_pred             CCCEEEECCCCCHHHHhhccC----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-cccc------ccCCCEEEEE
Confidence            568999999999998888743    34555335555567788999999864  665432 2222      2679999987


Q ss_pred             ---CcccHHHHHHHHccccccCeEEEEE
Q 022962          200 ---AVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ---~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                         +.+.....+..+...|++|+.+++.
T Consensus       108 lpk~~~~l~~~L~~l~~~l~~~~~i~~~  135 (375)
T 4dcm_A          108 VPKTLALLEQQLRALRKVVTSDTRIIAG  135 (375)
T ss_dssp             CCSCHHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred             cCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence               4556778888999999999998754

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=92.23  E-value=0.18  Score=47.27  Aligned_cols=95  Identities=14%  Similarity=0.086  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc--------------
Q 022962          119 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET--------------  182 (289)
Q Consensus       119 ~~~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~--------------  182 (289)
                      ++++.+||=+|+  |.|..++.+|+.. +++|++++.+++.++.+++    +|.+.+  +...-.+              
T Consensus       226 ~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~----lGa~~v--i~~~~~d~~~~~~~~~~~~~~  298 (456)
T 3krt_A          226 MKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRA----MGAEAI--IDRNAEGYRFWKDENTQDPKE  298 (456)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCCEE--EETTTTTCCSEEETTEECHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHh----hCCcEE--EecCcCcccccccccccchHH
Confidence            345889999997  3455666677665 5799999999988877754    565322  2111111              


Q ss_pred             -------cCCCCcCCCCceEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          183 -------LGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       183 -------~~~~~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                             +... .....+|+|+-..-.   ..+..+.++|+++|+++.+
T Consensus       299 ~~~~~~~i~~~-t~g~g~Dvvid~~G~---~~~~~~~~~l~~~G~iv~~  343 (456)
T 3krt_A          299 WKRFGKRIREL-TGGEDIDIVFEHPGR---ETFGASVFVTRKGGTITTC  343 (456)
T ss_dssp             HHHHHHHHHHH-HTSCCEEEEEECSCH---HHHHHHHHHEEEEEEEEES
T ss_pred             HHHHHHHHHHH-hCCCCCcEEEEcCCc---hhHHHHHHHhhCCcEEEEE
Confidence                   1000 012479999865422   4567777899999999864

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=92.17  E-value=0.4  Score=40.91  Aligned_cols=103  Identities=10%  Similarity=0.009  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-------CC
Q 022962          121 SNLKLVDVGTG-AGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FR  190 (289)
Q Consensus       121 ~~~~VLDiGcG-~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-------~~  190 (289)
                      ++.+||=.|++ +|.+|..+|+.+  .+.+|++++.++...+.+++..+..+  ++.++..|+.+...-..       .-
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   90 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASLKTHW   90 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            47899999985 355677777653  46899999998776666666656554  47788889876431100       01


Q ss_pred             CCceEEEEcCc--------------cc--------------HHHHHHHHccccccCeEEEEEE
Q 022962          191 EQYDVAVARAV--------------AE--------------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       191 ~~fD~V~sn~~--------------~~--------------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +..|+++.|+-              .+              .-.+.+.+.+.++++|.+++..
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  153 (271)
T 3ek2_A           91 DSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS  153 (271)
T ss_dssp             SCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence            36899998841              11              1345667777888889988765

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=92.14  E-value=0.54  Score=41.14  Aligned_cols=102  Identities=9%  Similarity=-0.036  Sum_probs=67.3

Q ss_pred             CCeEEEEcCCCC-hHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-------CCC
Q 022962          122 NLKLVDVGTGAG-LPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G-~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-------~~~  191 (289)
                      +.++|=.|.++| .+|..+|+.+  .+++|+.++.+++..+.+++..+..+  ++.++..|+.+...-..       .-+
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEKKWG  108 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            678999998743 2466665543  46899999999876666666655554  58888999876431100       014


Q ss_pred             CceEEEEcCc-c---------------c-----------HHHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV-A---------------E-----------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~-~---------------~-----------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..|+++.|+- .               +           .-.+.+.+.+.++.+|.++...
T Consensus       109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is  169 (293)
T 3grk_A          109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT  169 (293)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence            6899998841 0               1           1235566667777899988765

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=92.03  E-value=0.27  Score=44.43  Aligned_cols=95  Identities=16%  Similarity=0.067  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccc---ccCCCCcCCCCceEE
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAE---TLGKDVSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~---~~~~~~~~~~~fD~V  196 (289)
                      ++.+||=+|+|. |..++.+|+..++++|+++|.+++.++.++    ++|.+.+  +..+-+   .+... .....+|+|
T Consensus       186 ~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~----~lGa~~v--i~~~~~~~~~v~~~-~~g~g~Dvv  258 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE----RLGADHV--VDARRDPVKQVMEL-TRGRGVNVA  258 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH----HTTCSEE--EETTSCHHHHHHHH-TTTCCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HhCCCEE--EeccchHHHHHHHH-hCCCCCcEE
Confidence            488999999841 223344555553569999999998877765    4665422  221111   11000 012369999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +-..-......++.+.+.  ++|+++..
T Consensus       259 id~~G~~~~~~~~~~~~~--~~G~~v~~  284 (359)
T 1h2b_A          259 MDFVGSQATVDYTPYLLG--RMGRLIIV  284 (359)
T ss_dssp             EESSCCHHHHHHGGGGEE--EEEEEEEC
T ss_pred             EECCCCchHHHHHHHhhc--CCCEEEEE
Confidence            865432111156666666  99998764

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=92.00  E-value=0.31  Score=41.63  Aligned_cols=77  Identities=12%  Similarity=0.071  Sum_probs=55.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-CC-----CCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FR-----EQY  193 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~~-----~~f  193 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+++|.+++.++.+.+.++..+. ++.++..|+.+...-.. ..     +..
T Consensus         7 ~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~g~i   84 (252)
T 3h7a_A            7 NATVAVIGAGDY-IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGG-RIVARSLDARNEDEVTAFLNAADAHAPL   84 (252)
T ss_dssp             SCEEEEECCSSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECcCCCHHHHHHHHHHHHhhCCc
Confidence            678898898766 577776543  468999999999888777777666653 68899999876431100 00     468


Q ss_pred             eEEEEcC
Q 022962          194 DVAVARA  200 (289)
Q Consensus       194 D~V~sn~  200 (289)
                      |+++.|+
T Consensus        85 d~lv~nA   91 (252)
T 3h7a_A           85 EVTIFNV   91 (252)
T ss_dssp             EEEEECC
T ss_pred             eEEEECC
Confidence            9999884

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=91.99  E-value=0.19  Score=45.42  Aligned_cols=94  Identities=18%  Similarity=0.213  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+||=+|+|. |..++.+|+.. +++|+++|.+++..+.++   +++|.+.+ +-..+.+.+..   ..+.+|+|+-.
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~---~~lGa~~v-i~~~~~~~~~~---~~~g~D~vid~  251 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEAL---QDLGADDY-VIGSDQAKMSE---LADSLDYVIDT  251 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHH---TTSCCSCE-EETTCHHHHHH---STTTEEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHH---HHcCCcee-eccccHHHHHH---hcCCCCEEEEC
Confidence            478999998742 34444556554 469999999988766554   24665433 11112111111   12469999965


Q ss_pred             CcccHHHHHHHHccccccCeEEEEE
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .-..  ..++.+.+.|+++|+++..
T Consensus       252 ~g~~--~~~~~~~~~l~~~G~iv~~  274 (357)
T 2cf5_A          252 VPVH--HALEPYLSLLKLDGKLILM  274 (357)
T ss_dssp             CCSC--CCSHHHHTTEEEEEEEEEC
T ss_pred             CCCh--HHHHHHHHHhccCCEEEEe
Confidence            3211  1234455789999998764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=91.94  E-value=0.57  Score=40.96  Aligned_cols=102  Identities=15%  Similarity=0.127  Sum_probs=67.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC--hHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------C
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM--NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------R  190 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s--~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~  190 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+.+|.+  ....+.+.+..+..+. ++.++.+|+.+...-.. .      -
T Consensus        49 ~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           49 DRKALVTGGDSG-IGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGR-KAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTC-CEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            678999997655 677777653  46899999987  3445555555555553 68888899876421000 0      1


Q ss_pred             CCceEEEEcCc-------------c-----------cHHHHHHHHccccccCeEEEEEE
Q 022962          191 EQYDVAVARAV-------------A-----------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       191 ~~fD~V~sn~~-------------~-----------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +..|+++.|+-             .           ..-.+.+.+.+.++.+|.++...
T Consensus       127 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is  185 (294)
T 3r3s_A          127 GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS  185 (294)
T ss_dssp             TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence            36899998841             0           12345677778888899988764

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=91.88  E-value=0.42  Score=40.92  Aligned_cols=102  Identities=17%  Similarity=0.128  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEE-eCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~i-D~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.++|=.|+++| +|..+++.+  .+.+|+.+ +.+++..+.+.+..+..+. ++.++..|+.+...-.. .      -+
T Consensus         8 ~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (259)
T 3edm_A            8 NRTIVVAGAGRD-IGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGR-SALAIKADLTNAAEVEAAISAAADKFG   85 (259)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTS-CCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            678998997766 577766543  46899988 7777766666665555553 58888999876431100 0      13


Q ss_pred             CceEEEEcCc-c-----------------------cHHHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV-A-----------------------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~-~-----------------------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..|+++.|+- .                       ..-.+.+.+.+.++++|.++...
T Consensus        86 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  143 (259)
T 3edm_A           86 EIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS  143 (259)
T ss_dssp             SEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence            6899998841 0                       12345667777888889888764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=91.87  E-value=0.77  Score=40.02  Aligned_cols=102  Identities=10%  Similarity=0.115  Sum_probs=66.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChH-HHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNK-RCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~-~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.+||=.|+++| +|..+|+.+  .+.+|+.+|.+.. ..+.+.+..+..+. ++.++.+|+.+...-.. +      -+
T Consensus        47 gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g  124 (291)
T 3ijr_A           47 GKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGV-KCVLLPGDLSDEQHCKDIVQETVRQLG  124 (291)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            678999997655 577777653  4689999999865 34444444444443 68899999876421000 0      13


Q ss_pred             CceEEEEcCc-------------c-----------cHHHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV-------------A-----------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~-------------~-----------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..|+++.|+-             .           ..-.+++.+.+.++.+|.++...
T Consensus       125 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          125 SLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             SCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence            6899998830             0           12345677778888899988764

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=91.80  E-value=0.55  Score=40.41  Aligned_cols=77  Identities=12%  Similarity=0.049  Sum_probs=52.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC------------hHHHHHHHHHHHHcCCCCEEEEeccccccCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM------------NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV  187 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s------------~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~  187 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+++|.+            .+.++...+..+..+. ++.++..|+.+...-.
T Consensus        13 gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~   90 (278)
T 3sx2_A           13 GKVAFITGAARG-QGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS-RIVARQADVRDRESLS   90 (278)
T ss_dssp             TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC-CEEEEECCTTCHHHHH
T ss_pred             CCEEEEECCCCh-HHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHH
Confidence            678998896655 577776553  47899999987            6666665555555553 6899999987643110


Q ss_pred             c-C------CCCceEEEEcC
Q 022962          188 S-F------REQYDVAVARA  200 (289)
Q Consensus       188 ~-~------~~~fD~V~sn~  200 (289)
                      . .      -+..|+++.|+
T Consensus        91 ~~~~~~~~~~g~id~lv~nA  110 (278)
T 3sx2_A           91 AALQAGLDELGRLDIVVANA  110 (278)
T ss_dssp             HHHHHHHHHHCCCCEEEECC
T ss_pred             HHHHHHHHHcCCCCEEEECC
Confidence            0 0      03689999984

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.62  E-value=1.3  Score=33.77  Aligned_cols=70  Identities=14%  Similarity=0.111  Sum_probs=46.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-CCCCceEEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~~~~fD~V~s  198 (289)
                      ..+|+=+|+  |.+|..+++..  .+.+|+++|.+++.++.+++    .   .+.++.+|..+...-.. .-..+|+|+.
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~---~~~~~~gd~~~~~~l~~~~~~~~d~vi~   76 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----E---GFDAVIADPTDESFYRSLDLEGVSAVLI   76 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C---CCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence            457888888  56788777653  36799999999987766543    2   35677888765321000 0146899887


Q ss_pred             cC
Q 022962          199 RA  200 (289)
Q Consensus       199 n~  200 (289)
                      ..
T Consensus        77 ~~   78 (141)
T 3llv_A           77 TG   78 (141)
T ss_dssp             CC
T ss_pred             ec
Confidence            54

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=91.43  E-value=0.67  Score=40.52  Aligned_cols=102  Identities=16%  Similarity=0.055  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGA-GLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~-G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.++|=.|+++ +.+|..+|+.+  .+++|+++|.+++..+.+.+..+..+  ++.++..|+.+...-.. +      -+
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAEEWG  107 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            67899999865 34566666543  47899999999877666666666555  46788889876431100 0      13


Q ss_pred             CceEEEEcCc--------c--------c-----------HHHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV--------A--------E-----------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~--------~--------~-----------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..|+++.|+-        .        +           .-.+.+.+.+.++.+|.++...
T Consensus       108 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is  168 (296)
T 3k31_A          108 SLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS  168 (296)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             CCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence            6899998841        0        1           1345567777888899998765

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.35  E-value=0.77  Score=36.89  Aligned_cols=95  Identities=11%  Similarity=-0.080  Sum_probs=54.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--C-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-Cc-CCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--P-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VS-FREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-~~-~~~~fD~V  196 (289)
                      +.+|+=+|+  |..|..+++..  . +.+|+++|.+++.++.+++    .|   +.++.+|..+.... .. .-+.+|+|
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g---~~~~~gd~~~~~~l~~~~~~~~ad~v  109 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG---RNVISGDATDPDFWERILDTGHVKLV  109 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT---CCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC---CCEEEcCCCCHHHHHhccCCCCCCEE
Confidence            568888875  67777777543  3 5789999999987765543    33   44566776442110 00 01468999


Q ss_pred             EEcCcc-cHHHHHHHHccccccCeEEEEEE
Q 022962          197 VARAVA-EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       197 ~sn~~~-~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +...-. .....+-...+.+.|++.++...
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          110 LLAMPHHQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             EECCSSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             EEeCCChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            875322 11112222334456677776543

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=91.25  E-value=1.2  Score=40.56  Aligned_cols=113  Identities=12%  Similarity=0.058  Sum_probs=70.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEE-eCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~i-D~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ..+|.=+|||-|..=+......+ +.+++|| |.+++.   +++.++++|..    ...|++++..      ..|+|+.-
T Consensus         7 ~~rv~VvG~G~g~~h~~a~~~~~~~~elvav~~~~~~~---a~~~a~~~gv~----~~~~~~~l~~------~~D~v~i~   73 (372)
T 4gmf_A            7 KQRVLIVGAKFGEMYLNAFMQPPEGLELVGLLAQGSAR---SRELAHAFGIP----LYTSPEQITG------MPDIACIV   73 (372)
T ss_dssp             CEEEEEECSTTTHHHHHTTSSCCTTEEEEEEECCSSHH---HHHHHHHTTCC----EESSGGGCCS------CCSEEEEC
T ss_pred             CCEEEEEehHHHHHHHHHHHhCCCCeEEEEEECCCHHH---HHHHHHHhCCC----EECCHHHHhc------CCCEEEEE
Confidence            56899999997764333222334 4688865 887754   66667777763    3468887742      36776543


Q ss_pred             C-c-ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEe
Q 022962          200 A-V-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL  248 (289)
Q Consensus       200 ~-~-~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~  248 (289)
                      . . .....-.+.+..+|+-|=.++++++- ..+|..++.+..++.|....
T Consensus        74 ~p~~~h~~~~~~~a~~al~aGkhVl~EKPl-~~~ea~~l~~~A~~~g~~~~  123 (372)
T 4gmf_A           74 VRSTVAGGAGTQLARHFLARGVHVIQEHPL-HPDDISSLQTLAQEQGCCYW  123 (372)
T ss_dssp             CC--CTTSHHHHHHHHHHHTTCEEEEESCC-CHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCcccchhHHHHHHHHHHcCCcEEEecCC-CHHHHHHHHHHHHHcCCEEE
Confidence            1 1 11112233345567778888888875 56778888888888886543

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=91.16  E-value=0.65  Score=42.76  Aligned_cols=69  Identities=19%  Similarity=0.120  Sum_probs=44.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHH---C----CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCce
Q 022962          122 NLKLVDVGTGAGLPGLVLAIA---C----PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYD  194 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~---~----p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD  194 (289)
                      .-.|+++|.|+|.++..+.+.   .    ...+++.||+|+...+.-++.....  ++|+++ .++++++.      ..-
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~--~~v~W~-~~l~~lp~------~~~  151 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--RNIHWH-DSFEDVPE------GPA  151 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--SSEEEE-SSGGGSCC------SSE
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC--CCeEEe-CChhhcCC------CCe
Confidence            457999999999988776543   1    2458999999997765433332222  257765 34555532      245


Q ss_pred             EEEEc
Q 022962          195 VAVAR  199 (289)
Q Consensus       195 ~V~sn  199 (289)
                      +|++|
T Consensus       152 ~viAN  156 (387)
T 1zkd_A          152 VILAN  156 (387)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            66677

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=91.00  E-value=1.6  Score=34.95  Aligned_cols=94  Identities=16%  Similarity=0.153  Sum_probs=53.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~V~sn  199 (289)
                      .+-|||+|-|+|.-=--|...+|+..|+.+|.--..      .-.. --+.-.++.+|+.+....  .-+..+.-++.+.
T Consensus        41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~------hp~~-~P~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD  113 (174)
T 3iht_A           41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVAS------HPDS-TPPEAQLILGDIRETLPATLERFGATASLVHAD  113 (174)
T ss_dssp             CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCC------CGGG-CCCGGGEEESCHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeecc------CCCC-CCchHheecccHHHHHHHHHHhcCCceEEEEee
Confidence            457999999999866667778999999999953100      0000 001123455555542110  0012223333332


Q ss_pred             --------CcccHHHHHHHHccccccCeEEE
Q 022962          200 --------AVAEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       200 --------~~~~~~~ll~~~~~~LkpgG~l~  222 (289)
                              ..+....+-.-+..+|.|||.++
T Consensus       114 ~G~g~~~~d~a~a~~lsplI~~~la~GGi~v  144 (174)
T 3iht_A          114 LGGHNREKNDRFARLISPLIEPHLAQGGLMV  144 (174)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             cCCCCcchhHHHHHhhhHHHHHHhcCCcEEE
Confidence                    12233455567788999999976

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=90.98  E-value=0.54  Score=40.59  Aligned_cols=77  Identities=13%  Similarity=-0.007  Sum_probs=53.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~  192 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+++|.+++.++.+.+..+..+. ++.++..|+.+...-.. .      -+.
T Consensus        28 ~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (270)
T 3ftp_A           28 KQVAIVTGASRG-IGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL-EGRGAVLNVNDATAVDALVESTLKEFGA  105 (270)
T ss_dssp             TCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTC-CCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            678888886555 577776543  468999999999888777776666654 57788888876421100 0      136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus       106 iD~lvnnA  113 (270)
T 3ftp_A          106 LNVLVNNA  113 (270)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999984

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=90.85  E-value=0.34  Score=43.85  Aligned_cols=94  Identities=16%  Similarity=0.068  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+||=+|+|. |..++.+|+.. +++|+++|.+++..+.++   +.+|.+.+ +-..+.+.+..   ..+.+|+|+-.
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~---~~lGa~~v-~~~~~~~~~~~---~~~~~D~vid~  258 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEAL---KNFGADSF-LVSRDQEQMQA---AAGTLDGIIDT  258 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHH---HTSCCSEE-EETTCHHHHHH---TTTCEEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH---HhcCCceE-EeccCHHHHHH---hhCCCCEEEEC
Confidence            478999998642 34444555554 569999999988766554   24565322 11112111111   11469999976


Q ss_pred             CcccHHHHHHHHccccccCeEEEEE
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .-..  ..++.+.+.|+++|+++..
T Consensus       259 ~g~~--~~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          259 VSAV--HPLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             CSSC--CCSHHHHHHEEEEEEEEEC
T ss_pred             CCcH--HHHHHHHHHHhcCCEEEEE
Confidence            3221  0123444678999998754

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=90.80  E-value=0.97  Score=39.10  Aligned_cols=78  Identities=15%  Similarity=0.003  Sum_probs=55.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccccc-CCCCc-------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL-GKDVS-------FRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~-~~~~~-------~~~  191 (289)
                      +.+||=.|+++| +|..+|+.+  .+.+|++++.++...+.+.+..+..+-.++.++..|+.+. ..-..       ..+
T Consensus        12 ~k~vlITGas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g   90 (311)
T 3o26_A           12 RRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFG   90 (311)
T ss_dssp             CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CcEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhCC
Confidence            678888887655 677777653  4689999999998877776666665555799999999775 21000       013


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        91 ~iD~lv~nA   99 (311)
T 3o26_A           91 KLDILVNNA   99 (311)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999995

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=90.80  E-value=0.47  Score=40.78  Aligned_cols=77  Identities=17%  Similarity=0.035  Sum_probs=53.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHH-cCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSL-TQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~-~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.+||=.|+++| +|..+++.+  .+++|+++|.+++.++.+.+.... .+ .++.++..|+.+...-.. .      -+
T Consensus        20 ~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           20 GKRALITGATKG-IGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG-TDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             TCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            678888887665 577776653  468999999999887776665544 34 368999999987532100 0      13


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        98 ~id~lv~nA  106 (266)
T 4egf_A           98 GLDVLVNNA  106 (266)
T ss_dssp             SCSEEEEEC
T ss_pred             CCCEEEECC
Confidence            689999884

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=90.79  E-value=0.48  Score=42.39  Aligned_cols=79  Identities=6%  Similarity=-0.048  Sum_probs=51.5

Q ss_pred             CEEEE-eccccccCCCCcCCCCceEEEEcC---cc------------cHHHHHHHHccccccCeEEEEEEcCCcH-----
Q 022962          172 NVQIV-RGRAETLGKDVSFREQYDVAVARA---VA------------EMRILAEYCLPLVRVGGLFVAAKGHDPQ-----  230 (289)
Q Consensus       172 ni~~~-~~d~~~~~~~~~~~~~fD~V~sn~---~~------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~-----  230 (289)
                      ..+++ ++|..+.... ..+++||+|++..   ..            .+...+.++.++|+|||.+++..+....     
T Consensus        38 ~~~l~i~gD~l~~L~~-l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~~  116 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAK-LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGS  116 (319)
T ss_dssp             EEEEEEECCHHHHHHT-SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTB
T ss_pred             cceEEECCcHHHHHHh-CccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCccccccccc
Confidence            36777 9998764221 1246899999983   11            2467778889999999999998775433     


Q ss_pred             HHHHHHHHHHHHhC-CeEeEEe
Q 022962          231 EEVKNSERAVQLMG-ASLLQLC  251 (289)
Q Consensus       231 ~ei~~~~~~l~~~g-~~~~~~~  251 (289)
                      ..+..+...+...| +......
T Consensus       117 ~~l~~l~~~i~~~G~~~~~~~I  138 (319)
T 1eg2_A          117 GDLISIISHMRQNSKMLLANLI  138 (319)
T ss_dssp             CCHHHHHHHHHHHCCCEEEEEE
T ss_pred             ccHHHHHHHHhCcccceeEEEE
Confidence            11223344455667 8776654

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=90.79  E-value=0.53  Score=40.62  Aligned_cols=77  Identities=14%  Similarity=0.014  Sum_probs=54.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-------CCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-------~~~~  192 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+++|.+++.++.+.+..+..+. ++.++..|+.+...-..       .-+.
T Consensus         4 ~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   81 (264)
T 3tfo_A            4 DKVILITGASGG-IGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGG-TALAQVLDVTDRHSVAAFAQAAVDTWGR   81 (264)
T ss_dssp             TCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            567888887765 577776543  478999999999888877776666553 58888888876421100       0136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        82 iD~lVnnA   89 (264)
T 3tfo_A           82 IDVLVNNA   89 (264)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=90.73  E-value=1.9  Score=37.57  Aligned_cols=79  Identities=9%  Similarity=-0.062  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEE-eccccccCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIV-RGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~-~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ++.+||=.|+ +|.+|..++..+  .+.+|++++.+......+........-.+++++ .+|+.+...-...-+.+|+|+
T Consensus        10 ~~~~vlVTGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   88 (342)
T 1y1p_A           10 EGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence            3678998886 577888877543  467999999988765544443322211468888 789876532211113689999


Q ss_pred             EcC
Q 022962          198 ARA  200 (289)
Q Consensus       198 sn~  200 (289)
                      .++
T Consensus        89 h~A   91 (342)
T 1y1p_A           89 HIA   91 (342)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            874

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=90.64  E-value=0.89  Score=38.59  Aligned_cols=77  Identities=13%  Similarity=0.127  Sum_probs=51.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~~  192 (289)
                      +.++|=.|++ |.+|..+++.+  .+.+|+++|.+++.++.+.+..+..+. ++.++..|+.+...-. .+      -+.
T Consensus         2 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (256)
T 1geg_A            2 KKVALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGG   79 (256)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            3567778865 45677777643  468999999998877666555555443 5888888987642100 00      136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        80 id~lv~nA   87 (256)
T 1geg_A           80 FDVIVNNA   87 (256)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999984

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=90.61  E-value=2.2  Score=39.67  Aligned_cols=117  Identities=9%  Similarity=0.059  Sum_probs=70.5

Q ss_pred             CCeEEEEcCCCChHHHHHH---HHCCCCEEE-EEeCChHHHHHHHHHHHHcCCCCEEEEec---cccccCCCCcCCCCce
Q 022962          122 NLKLVDVGTGAGLPGLVLA---IACPDWKVT-LLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAETLGKDVSFREQYD  194 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la---~~~p~~~V~-~iD~s~~~l~~a~~~~~~~~l~ni~~~~~---d~~~~~~~~~~~~~fD  194 (289)
                      ..+|.=||||.  +|...+   ...++.+++ .+|.+++..+.+.+...+.|+..+.+...   |.+++...    ...|
T Consensus        20 ~~rvgiIG~G~--~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~----~~vD   93 (444)
T 2ixa_A           20 KVRIAFIAVGL--RGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKD----KNID   93 (444)
T ss_dssp             CEEEEEECCSH--HHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTC----TTCC
T ss_pred             CceEEEEecCH--HHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcC----CCCC
Confidence            35788888873  332222   234777876 55999887766665555566544554432   66665432    3589


Q ss_pred             EEEEcCcc-cHHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHhCCeE
Q 022962          195 VAVARAVA-EMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGASL  247 (289)
Q Consensus       195 ~V~sn~~~-~~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~g~~~  247 (289)
                      +|+..... ....+.   ..+|+.|-.++++++. ...++..++.+..++.|..+
T Consensus        94 ~V~i~tp~~~h~~~~---~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~  145 (444)
T 2ixa_A           94 AVFVSSPWEWHHEHG---VAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPL  145 (444)
T ss_dssp             EEEECCCGGGHHHHH---HHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCE
T ss_pred             EEEEcCCcHHHHHHH---HHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence            99866432 222333   3456677777887753 45667777777777777654

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=90.58  E-value=0.23  Score=46.25  Aligned_cols=95  Identities=12%  Similarity=0.030  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec--cc--------------
Q 022962          119 CNSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG--RA--------------  180 (289)
Q Consensus       119 ~~~~~~VLDiGcG--~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~--d~--------------  180 (289)
                      ++++.+||=.|++  .|..++.+|+.. +++|++++.+++.++.++    ++|.+.+ +-..  +.              
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~----~lGa~~~-i~~~~~~~~~~~~~~~~~~~~~  291 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVR----ALGCDLV-INRAELGITDDIADDPRRVVET  291 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCCCE-EEHHHHTCCTTGGGCHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----hcCCCEE-Eecccccccccccccccccchh
Confidence            3458899999973  344555566654 579999999998887764    4565432 1111  11              


Q ss_pred             -----cccCCCCcCCCCceEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          181 -----ETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       181 -----~~~~~~~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                           +.+..  .....+|+|+-+.-.   ..++.+.+.|+++|+++..
T Consensus       292 ~~~~~~~v~~--~~g~g~Dvvid~~G~---~~~~~~~~~l~~~G~iv~~  335 (447)
T 4a0s_A          292 GRKLAKLVVE--KAGREPDIVFEHTGR---VTFGLSVIVARRGGTVVTC  335 (447)
T ss_dssp             HHHHHHHHHH--HHSSCCSEEEECSCH---HHHHHHHHHSCTTCEEEES
T ss_pred             hhHHHHHHHH--HhCCCceEEEECCCc---hHHHHHHHHHhcCCEEEEE
Confidence                 00100  012469999976433   2566777889999998864

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.52  E-value=0.61  Score=40.08  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC-hHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM-NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s-~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+.++.+ .+..+.+.+..+..+. ++.++..|+.+...-.. .      -+
T Consensus        18 ~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g   95 (270)
T 3is3_A           18 GKVALVTGSGRG-IGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGS-DAIAIKADIRQVPEIVKLFDQAVAHFG   95 (270)
T ss_dssp             TCEEEESCTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            678998897655 577776543  46899988764 5555555555555553 68899999876431100 0      13


Q ss_pred             CceEEEEcCc------------cc-----------HHHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV------------AE-----------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~------------~~-----------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..|+++.|+-            .+           .-.+.+.+.+.++++|.+++..
T Consensus        96 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  152 (270)
T 3is3_A           96 HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS  152 (270)
T ss_dssp             CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            6899998841            01           2345566777777899988764

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=90.46  E-value=0.62  Score=40.32  Aligned_cols=77  Identities=16%  Similarity=0.137  Sum_probs=54.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C-----CCCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F-----REQY  193 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~-----~~~f  193 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+++|.+++.++.+.+.....+. ++.++..|+.+...-.. .     .+..
T Consensus        33 gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~g~i  110 (275)
T 4imr_A           33 GRTALVTGSSRG-IGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGG-TAQELAGDLSEAGAGTDLIERAEAIAPV  110 (275)
T ss_dssp             TCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTC-CEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            678888887655 577776653  468999999998877777666666553 68899999876532100 0     0468


Q ss_pred             eEEEEcC
Q 022962          194 DVAVARA  200 (289)
Q Consensus       194 D~V~sn~  200 (289)
                      |+++.|+
T Consensus       111 D~lvnnA  117 (275)
T 4imr_A          111 DILVINA  117 (275)
T ss_dssp             CEEEECC
T ss_pred             CEEEECC
Confidence            9999984

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=90.42  E-value=1.4  Score=33.09  Aligned_cols=93  Identities=14%  Similarity=0.179  Sum_probs=52.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~s  198 (289)
                      +.+|+=+|+  |.+|..++...  .+.+|+++|.+++.++.+++   ..   ++.++.+|..+..... ..-..+|+|+.
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~---~~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA---EI---DALVINGDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HC---SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---hc---CcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence            457887876  77887777543  35799999999877654432   22   3456667654321100 00146899887


Q ss_pred             cCcc-cHHHHHHHHccccccCeEEEE
Q 022962          199 RAVA-EMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       199 n~~~-~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      ..-. .....+..+.+.+.++ .+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~-~ii~  100 (140)
T 1lss_A           76 VTGKEEVNLMSSLLAKSYGIN-KTIA  100 (140)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCC-CEEE
T ss_pred             eeCCchHHHHHHHHHHHcCCC-EEEE
Confidence            6422 2233333444456665 4444

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=90.34  E-value=0.82  Score=39.43  Aligned_cols=102  Identities=14%  Similarity=0.054  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC-hHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM-NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s-~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+.+|.+ .+..+.+.+..+..+. ++.++.+|+.+...-.. .      -+
T Consensus        31 gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (271)
T 3v2g_A           31 GKTAFVTGGSRG-IGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGG-RAVAIRADNRDAEAIEQAIRETVEALG  108 (271)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            678999998765 577776543  46899998665 4555555555555553 68889999876431100 0      13


Q ss_pred             CceEEEEcCc------------cc-----------HHHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV------------AE-----------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~------------~~-----------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..|+++.|+-            .+           .-.+++.+.+.++.+|.++...
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is  165 (271)
T 3v2g_A          109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG  165 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            6899999841            01           2245566677778889988764

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=90.32  E-value=1.2  Score=36.40  Aligned_cols=67  Identities=13%  Similarity=0.133  Sum_probs=46.5

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          124 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +||=.|+ +|.+|..++..+  .+.+|++++.++..+...       .-.+++++.+|+.+... ..+ +.+|+|+.++
T Consensus         2 kilVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------~~~~~~~~~~D~~d~~~-~~~-~~~d~vi~~a   70 (224)
T 3h2s_A            2 KIAVLGA-TGRAGSAIVAEARRRGHEVLAVVRDPQKAADR-------LGATVATLVKEPLVLTE-ADL-DSVDAVVDAL   70 (224)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-------TCTTSEEEECCGGGCCH-HHH-TTCSEEEECC
T ss_pred             EEEEEcC-CCHHHHHHHHHHHHCCCEEEEEEecccccccc-------cCCCceEEecccccccH-hhc-ccCCEEEECC
Confidence            4666674 678888877653  468999999998654322       12368999999987643 112 4689999885

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=90.24  E-value=0.8  Score=40.55  Aligned_cols=78  Identities=12%  Similarity=-0.058  Sum_probs=55.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCc-------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVS-------FRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~-------~~~  191 (289)
                      +.+||=.|+++| +|..+++.+  .+.+|++++.++..++.+.+.....+.. ++.++..|+.+...-..       .-+
T Consensus         8 ~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            8 GRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            678999998766 577776653  4689999999998888777766655532 68899999876431000       014


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        87 ~id~lv~nA   95 (319)
T 3ioy_A           87 PVSILCNNA   95 (319)
T ss_dssp             CEEEEEECC
T ss_pred             CCCEEEECC
Confidence            689999984

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.22  E-value=0.71  Score=39.83  Aligned_cols=77  Identities=13%  Similarity=-0.053  Sum_probs=52.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeC-------------ChHHHHHHHHHHHHcCCCCEEEEeccccccCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLES-------------MNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD  186 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~-------------s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~  186 (289)
                      +.++|=.|+++| +|..+|+.+  .+++|+++|.             +++.++.+.+..+..+. ++.++..|+.+...-
T Consensus        15 gk~~lVTGas~g-IG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           15 GRVAFITGAARG-QGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR-KALTRVLDVRDDAAL   92 (280)
T ss_dssp             TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHH
T ss_pred             CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHH
Confidence            678998898766 577776553  4789999998             67776666666665553 688889998764311


Q ss_pred             Cc-C------CCCceEEEEcC
Q 022962          187 VS-F------REQYDVAVARA  200 (289)
Q Consensus       187 ~~-~------~~~fD~V~sn~  200 (289)
                      .. .      -+..|+++.|+
T Consensus        93 ~~~~~~~~~~~g~id~lvnnA  113 (280)
T 3pgx_A           93 RELVADGMEQFGRLDVVVANA  113 (280)
T ss_dssp             HHHHHHHHHHHCCCCEEEECC
T ss_pred             HHHHHHHHHHcCCCCEEEECC
Confidence            00 0      13689999984

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=90.11  E-value=0.68  Score=39.66  Aligned_cols=102  Identities=14%  Similarity=0.091  Sum_probs=65.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCh---HHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMN---KRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------  189 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~---~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------  189 (289)
                      +.++|=.|+++| +|..+|+.+  .+++|+.++.+.   +.++.+.+..+..+. ++.++..|+.+...-.. +      
T Consensus        11 ~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~   88 (262)
T 3ksu_A           11 NKVIVIAGGIKN-LGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGA-KVALYQSDLSNEEEVAKLFDFAEKE   88 (262)
T ss_dssp             TCEEEEETCSSH-HHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTC-EEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHH
Confidence            678998898766 577877654  468999987654   344444444444342 58889999876431100 0      


Q ss_pred             CCCceEEEEcCc------------cc-----------HHHHHHHHccccccCeEEEEEE
Q 022962          190 REQYDVAVARAV------------AE-----------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       190 ~~~fD~V~sn~~------------~~-----------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      -+..|+++.|+-            .+           .-.+.+.+.+.++++|.+++..
T Consensus        89 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is  147 (262)
T 3ksu_A           89 FGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA  147 (262)
T ss_dssp             HCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence            136899999841            11           2345567777788889988764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=89.99  E-value=0.49  Score=40.99  Aligned_cols=77  Identities=14%  Similarity=0.126  Sum_probs=54.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~  192 (289)
                      +.++|=.|+++| +|..+++.+  .+++|+++|.+++.++.+.+..+..+. ++.++..|+.+...-.. .      -+.
T Consensus        32 gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  109 (276)
T 3r1i_A           32 GKRALITGASTG-IGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGG-KALPIRCDVTQPDQVRGMLDQMTGELGG  109 (276)
T ss_dssp             TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            678998887755 577776543  468999999999887777766666553 68888999876431100 0      036


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus       110 iD~lvnnA  117 (276)
T 3r1i_A          110 IDIAVCNA  117 (276)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999984

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=89.80  E-value=5.6  Score=36.22  Aligned_cols=77  Identities=17%  Similarity=0.168  Sum_probs=49.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChH---HHHHHHHHHHHc--------CCCCEEEEeccccccCCCCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNK---RCVFLEHAVSLT--------QLLNVQIVRGRAETLGKDVS  188 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~---~l~~a~~~~~~~--------~l~ni~~~~~d~~~~~~~~~  188 (289)
                      +.+||=.|+ +|.+|..+++.+  .+.+|++++.++.   ..+...+..+..        ...++.++.+|+.+...-. 
T Consensus        69 ~~~vlVTGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-  146 (427)
T 4f6c_A           69 LGNTLLTGA-TGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-  146 (427)
T ss_dssp             CEEEEEECT-TSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC-
T ss_pred             CCEEEEecC-CcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC-
Confidence            568888885 678888887664  3578999998876   433333333222        1136999999998743211 


Q ss_pred             CCCCceEEEEcC
Q 022962          189 FREQYDVAVARA  200 (289)
Q Consensus       189 ~~~~fD~V~sn~  200 (289)
                      ....+|.|+.++
T Consensus       147 ~~~~~d~Vih~A  158 (427)
T 4f6c_A          147 LPENMDTIIHAG  158 (427)
T ss_dssp             CSSCCSEEEECC
T ss_pred             CcCCCCEEEECC
Confidence            235789999874

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=89.76  E-value=0.55  Score=39.51  Aligned_cols=77  Identities=12%  Similarity=-0.005  Sum_probs=52.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCC------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFR------EQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~------~~  192 (289)
                      +.+||=.|+ +|.+|..+++.+  .+.+|+++|.++..++...+..+..+. ++.++.+|+.+...-. .+.      +.
T Consensus        11 ~~~vlVtGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~   88 (255)
T 1fmc_A           11 GKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TCEEEETTT-TSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCC-ceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            668887785 566788887653  468999999998877666555555443 6888889987642110 000      36


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      +|+|+.++
T Consensus        89 ~d~vi~~A   96 (255)
T 1fmc_A           89 VDILVNNA   96 (255)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=89.70  E-value=1.2  Score=38.58  Aligned_cols=77  Identities=17%  Similarity=0.123  Sum_probs=52.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeC-ChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLES-MNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~-s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+.+|. +++.++.+.+.....+. ++.++..|+.+...-.. .      -+
T Consensus        29 ~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           29 RPVAIVTGGRRG-IGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGA-RVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTC-CEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             CCEEEEecCCCH-HHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            678888897665 577766543  4689999995 77666666555555553 68999999987532100 0      03


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus       107 ~iD~lvnnA  115 (280)
T 4da9_A          107 RIDCLVNNA  115 (280)
T ss_dssp             CCCEEEEEC
T ss_pred             CCCEEEECC
Confidence            689999884

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=89.69  E-value=1.9  Score=37.60  Aligned_cols=99  Identities=16%  Similarity=0.080  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~  192 (289)
                      ++.+|=-|.++| +|..+|+.+  .+++|+.+|.+++.++.+   +++++- ++..+.+|+.+...-.       ..-+.
T Consensus        29 gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~---~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~G~  103 (273)
T 4fgs_A           29 AKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAA---IAEIGG-GAVGIQADSANLAELDRLYEKVKAEAGR  103 (273)
T ss_dssp             TCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHH---HHHHCT-TCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHH---HHHcCC-CeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            778888898877 577766653  578999999999876544   444553 5777888887642110       00147


Q ss_pred             ceEEEEcC------------cc-----------cHHHHHHHHccccccCeEEEEEE
Q 022962          193 YDVAVARA------------VA-----------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       193 fD~V~sn~------------~~-----------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .|+++.|+            .+           ..-.+.+.+.+.++.+|.++...
T Consensus       104 iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis  159 (273)
T 4fgs_A          104 IDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG  159 (273)
T ss_dssp             EEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             CCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            89999984            01           12345577888999999988654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=89.63  E-value=0.63  Score=39.35  Aligned_cols=77  Identities=16%  Similarity=0.028  Sum_probs=54.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~  192 (289)
                      +.+||=.|+++| +|..+++.+  .+.+|+++|.+++.++.+.+..+..+. ++.++..|+.+...-.. +      -+.
T Consensus         9 ~k~vlITGas~g-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T 3qiv_A            9 NKVGIVTGSGGG-IGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGG-TAISVAVDVSDPESAKAMADRTLAEFGG   86 (253)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            678998897554 677777653  468999999999888777776666543 68888999876431100 0      136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        87 id~li~~A   94 (253)
T 3qiv_A           87 IDYLVNNA   94 (253)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=89.62  E-value=0.83  Score=38.65  Aligned_cols=77  Identities=16%  Similarity=0.090  Sum_probs=50.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeC-ChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLES-MNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~-s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.+||=.|++ |.+|..+++.+  .+.+|++++. ++..++...+..+..+. ++.++.+|+.+...-.. .      -+
T Consensus         7 ~k~vlITGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (261)
T 1gee_A            7 GKVVVITGSS-TGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5688888865 56687777643  4689999999 77666555555554442 58888899876421000 0      02


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+|+.|+
T Consensus        85 ~id~li~~A   93 (261)
T 1gee_A           85 KLDVMINNA   93 (261)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999884

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=89.58  E-value=2.1  Score=37.48  Aligned_cols=112  Identities=15%  Similarity=0.171  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ..+|.=||+|  .+|..+|...  .+.+|+++|.+++.++.+.+    .|..   ....+..+..      ...|+|+..
T Consensus         7 ~~~I~iIG~G--~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~----~g~~---~~~~~~~e~~------~~aDvvi~~   71 (303)
T 3g0o_A            7 DFHVGIVGLG--SMGMGAARSCLRAGLSTWGADLNPQACANLLA----EGAC---GAAASAREFA------GVVDALVIL   71 (303)
T ss_dssp             CCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---EEESSSTTTT------TTCSEEEEC
T ss_pred             CCeEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----cCCc---cccCCHHHHH------hcCCEEEEE
Confidence            3578888764  6666666432  35799999999987766544    2431   1233443332      357999876


Q ss_pred             Ccc--cHHHHH---HHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeE
Q 022962          200 AVA--EMRILA---EYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       200 ~~~--~~~~ll---~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                      -..  ..+.++   +.+...+++|..++- .+.........+.+.+...|...+.
T Consensus        72 vp~~~~~~~v~~~~~~l~~~l~~g~ivv~-~st~~~~~~~~~~~~~~~~g~~~~~  125 (303)
T 3g0o_A           72 VVNAAQVRQVLFGEDGVAHLMKPGSAVMV-SSTISSADAQEIAAALTALNLNMLD  125 (303)
T ss_dssp             CSSHHHHHHHHC--CCCGGGSCTTCEEEE-CSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCHHHHHHHHhChhhHHhhCCCCCEEEe-cCCCCHHHHHHHHHHHHHcCCeEEe
Confidence            432  355565   666677888777654 3334444445555666667766554

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=89.57  E-value=1.2  Score=39.31  Aligned_cols=90  Identities=14%  Similarity=0.069  Sum_probs=55.7

Q ss_pred             CCCeEEEEc-CC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVG-TG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiG-cG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~~~~~~~~~fD~V~  197 (289)
                      ++.+||=+| +| .|..++.+|+.. +++|++++. ++..+.+    +++|.+.  ++..+-.+ +...   -..+|+|+
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~~-~~~~~~~----~~lGa~~--~i~~~~~~~~~~~---~~g~D~v~  220 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTAS-KRNHAFL----KALGAEQ--CINYHEEDFLLAI---STPVDAVI  220 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEEC-HHHHHHH----HHHTCSE--EEETTTSCHHHHC---CSCEEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEec-cchHHHH----HHcCCCE--EEeCCCcchhhhh---ccCCCEEE
Confidence            488999886 44 466667777776 569999985 4444444    4567642  22222111 2111   14699998


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      -..-.  ..+ ..+.++|+++|+++..
T Consensus       221 d~~g~--~~~-~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          221 DLVGG--DVG-IQSIDCLKETGCIVSV  244 (321)
T ss_dssp             ESSCH--HHH-HHHGGGEEEEEEEEEC
T ss_pred             ECCCc--HHH-HHHHHhccCCCEEEEe
Confidence            65322  223 7788999999999864

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=89.51  E-value=1.1  Score=38.06  Aligned_cols=74  Identities=14%  Similarity=-0.023  Sum_probs=49.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~  192 (289)
                      +.++|=.|+++ .+|..+++.+  .+.+|+++|.+.+.++.+.+   ..+ .++.++..|+.+...-.       ..-+.
T Consensus         8 ~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   82 (259)
T 4e6p_A            8 GKSALITGSAR-GIGRAFAEAYVREGATVAIADIDIERARQAAA---EIG-PAAYAVQMDVTRQDSIDAAIAATVEHAGG   82 (259)
T ss_dssp             TCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HHC-TTEEEEECCTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhC-CCceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            67899889654 4677776653  46899999999876554433   333 25888899987643110       00137


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        83 id~lv~~A   90 (259)
T 4e6p_A           83 LDILVNNA   90 (259)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999984

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=89.45  E-value=0.7  Score=39.70  Aligned_cols=77  Identities=13%  Similarity=-0.045  Sum_probs=53.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~  192 (289)
                      +.+||=.|++ |.+|..+++.+  .+.+|+++|.++..++.+.+..+..+. ++.++.+|+.+...-.. .      -+.
T Consensus        31 ~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  108 (272)
T 1yb1_A           31 GEIVLITGAG-HGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEIGD  108 (272)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCC-eEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            6788888865 55788877653  468999999998877766665555543 68899999876421000 0      136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      +|+|+.|+
T Consensus       109 iD~li~~A  116 (272)
T 1yb1_A          109 VSILVNNA  116 (272)
T ss_dssp             CSEEEECC
T ss_pred             CcEEEECC
Confidence            89999884

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=89.34  E-value=3.4  Score=35.17  Aligned_cols=90  Identities=10%  Similarity=0.026  Sum_probs=60.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ..+||=.| + |.+|..++...  .+.+|++++.++........       .+++++.+|+.++.     -..+|.|+..
T Consensus         5 ~~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~-----~~~~d~vi~~   70 (286)
T 3ius_A            5 TGTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS-----LDGVTHLLIS   70 (286)
T ss_dssp             CCEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC-----CTTCCEEEEC
T ss_pred             cCcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-------CCCeEEEecccccc-----cCCCCEEEEC
Confidence            35899999 4 99999988654  35799999999876543332       36899999998865     1568999987


Q ss_pred             Ccc------cHHHHHHHHccccccCeEEEEEE
Q 022962          200 AVA------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       200 ~~~------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +-.      ....+++.+...-..-+++++..
T Consensus        71 a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~S  102 (286)
T 3ius_A           71 TAPDSGGDPVLAALGDQIAARAAQFRWVGYLS  102 (286)
T ss_dssp             CCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             CCccccccHHHHHHHHHHHhhcCCceEEEEee
Confidence            521      13455555444212335666544

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=89.26  E-value=0.94  Score=39.15  Aligned_cols=77  Identities=12%  Similarity=0.039  Sum_probs=51.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC----------------hHHHHHHHHHHHHcCCCCEEEEecccccc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM----------------NKRCVFLEHAVSLTQLLNVQIVRGRAETL  183 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s----------------~~~l~~a~~~~~~~~l~ni~~~~~d~~~~  183 (289)
                      +.++|=.|+++| +|..+|+.+  .+++|+++|.+                ++.++.+.+..+..+. ++.++..|+.+.
T Consensus        11 ~k~~lVTGas~g-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~   88 (286)
T 3uve_A           11 GKVAFVTGAARG-QGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNR-RIVTAEVDVRDY   88 (286)
T ss_dssp             TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTC-CEEEEECCTTCH
T ss_pred             CCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCC-ceEEEEcCCCCH
Confidence            678999998776 577766553  47899999987                5565555554544443 688999998764


Q ss_pred             CCCCc-C------CCCceEEEEcC
Q 022962          184 GKDVS-F------REQYDVAVARA  200 (289)
Q Consensus       184 ~~~~~-~------~~~fD~V~sn~  200 (289)
                      ..-.. .      -+..|+++.|+
T Consensus        89 ~~v~~~~~~~~~~~g~id~lv~nA  112 (286)
T 3uve_A           89 DALKAAVDSGVEQLGRLDIIVANA  112 (286)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECC
Confidence            31100 0      13689999884

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=89.09  E-value=3.7  Score=36.30  Aligned_cols=113  Identities=11%  Similarity=0.015  Sum_probs=65.3

Q ss_pred             CeEEEEcCCCChHHHHHHHH--CCC-CEEEEEeCChH---HHHHHHHHHHHcCCCCEEEEec-cccccCCCCcCCCCceE
Q 022962          123 LKLVDVGTGAGLPGLVLAIA--CPD-WKVTLLESMNK---RCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYDV  195 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~--~p~-~~V~~iD~s~~---~l~~a~~~~~~~~l~ni~~~~~-d~~~~~~~~~~~~~fD~  195 (289)
                      .+|.=||+  |.+|..+|..  ..+ .+|+++|.+++   ..+...+.+...|.      .. +..+..      ...|+
T Consensus        25 m~IgvIG~--G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~------~~~s~~e~~------~~aDv   90 (317)
T 4ezb_A           25 TTIAFIGF--GEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV------EPLDDVAGI------ACADV   90 (317)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC------EEESSGGGG------GGCSE
T ss_pred             CeEEEECc--cHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC------CCCCHHHHH------hcCCE
Confidence            46878876  5666666654  235 69999999973   11112222233343      22 333332      34688


Q ss_pred             EEEc-CcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          196 AVAR-AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       196 V~sn-~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                      |+.. ........++.+...+++|..++-. +.........+.+.+...|...+..
T Consensus        91 Vi~avp~~~~~~~~~~i~~~l~~~~ivv~~-st~~p~~~~~~~~~l~~~g~~~~d~  145 (317)
T 4ezb_A           91 VLSLVVGAATKAVAASAAPHLSDEAVFIDL-NSVGPDTKALAAGAIATGKGSFVEG  145 (317)
T ss_dssp             EEECCCGGGHHHHHHHHGGGCCTTCEEEEC-CSCCHHHHHHHHHHHHTSSCEEEEE
T ss_pred             EEEecCCHHHHHHHHHHHhhcCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCeEEec
Confidence            8876 3334455668888889888766543 3334444455556666777765543

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=89.06  E-value=1  Score=38.35  Aligned_cols=102  Identities=19%  Similarity=0.128  Sum_probs=63.7

Q ss_pred             CCeEEEEcCC-CChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTG-AGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG-~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.++|=.|++ +|.+|..+++.+  .+.+|+++|.+++.-+.+++..+..+  ++.++.+|+.+...-.. +      -+
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKEAFG   85 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            6789999986 366787776543  36899999998753233333333333  47788888876421100 0      03


Q ss_pred             CceEEEEcCc-c---------------cH-----------HHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV-A---------------EM-----------RILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~-~---------------~~-----------~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..|+++.|+- .               ++           -.+++.+.+.++.+|+++...
T Consensus        86 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  146 (261)
T 2wyu_A           86 GLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT  146 (261)
T ss_dssp             SEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred             CCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence            6899998841 0               11           245567777777788988765

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=88.97  E-value=0.75  Score=39.59  Aligned_cols=102  Identities=16%  Similarity=0.093  Sum_probs=65.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEE-eCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~i-D~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+.+ +.+++..+.+.+..+..+. ++.++..|+.+...-.. .      -+
T Consensus        27 ~k~~lVTGas~G-IG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g  104 (267)
T 3u5t_A           27 NKVAIVTGASRG-IGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGG-KALTAQADVSDPAAVRRLFATAEEAFG  104 (267)
T ss_dssp             CCEEEEESCSSH-HHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            678888897766 466666543  36788887 4556666666555555553 68888999876431100 0      13


Q ss_pred             CceEEEEcCc------------cc-----------HHHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV------------AE-----------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~------------~~-----------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..|+++.|+-            .+           .-.+++.+.+.++.+|.++...
T Consensus       105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  161 (267)
T 3u5t_A          105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS  161 (267)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            7899999840            01           1234566677778889988764

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=88.81  E-value=1.1  Score=39.66  Aligned_cols=77  Identities=10%  Similarity=0.039  Sum_probs=51.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC------------hHHHHHHHHHHHHcCCCCEEEEeccccccCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM------------NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV  187 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s------------~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~  187 (289)
                      +.++|=.|+++| +|..+|+.+  .+++|+++|.+            .+.++.+.+..+..+. ++.++..|+.+...-.
T Consensus        46 gk~~lVTGas~G-IG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~  123 (317)
T 3oec_A           46 GKVAFITGAARG-QGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGR-RIIARQADVRDLASLQ  123 (317)
T ss_dssp             TCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHH
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHH
Confidence            678888887766 577766553  47899999986            5555555555555553 6889999987643110


Q ss_pred             c-C------CCCceEEEEcC
Q 022962          188 S-F------REQYDVAVARA  200 (289)
Q Consensus       188 ~-~------~~~fD~V~sn~  200 (289)
                      . .      -+..|+++.|+
T Consensus       124 ~~~~~~~~~~g~iD~lVnnA  143 (317)
T 3oec_A          124 AVVDEALAEFGHIDILVSNV  143 (317)
T ss_dssp             HHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHcCCCCEEEECC
Confidence            0 0      13689999984

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=88.56  E-value=1.2  Score=37.18  Aligned_cols=77  Identities=18%  Similarity=0.052  Sum_probs=52.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHH-HcCCCCEEEEeccccccCCCCc-CC------C
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVS-LTQLLNVQIVRGRAETLGKDVS-FR------E  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~-~~~l~ni~~~~~d~~~~~~~~~-~~------~  191 (289)
                      +.++|=.|+++ .+|..+++.+  .+.+|++++.+.+.++.+.+... ..+ .++.++..|+.+...-.. ..      +
T Consensus         2 ~k~vlITGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            2 MKVAVITGASR-GIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG-VEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            45788888654 4677777653  46899999999887776655544 334 368899999876431100 11      3


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        80 ~id~li~~A   88 (235)
T 3l77_A           80 DVDVVVANA   88 (235)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999884

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=88.43  E-value=1.2  Score=38.24  Aligned_cols=77  Identities=13%  Similarity=-0.037  Sum_probs=52.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC--------cCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV--------SFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~--------~~~~  191 (289)
                      +.++|=.|+++ .+|..+++.+  .+.+|+++|.+++.++.+.+..+..+. ++.++..|+.+...-.        .+++
T Consensus        21 ~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~g   98 (273)
T 1ae1_A           21 GTTALVTGGSK-GIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVFDG   98 (273)
T ss_dssp             TCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEECCcc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            67899889754 5677777653  468999999998877666555555443 6888899987642110        0115


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        99 ~id~lv~nA  107 (273)
T 1ae1_A           99 KLNILVNNA  107 (273)
T ss_dssp             CCCEEEECC
T ss_pred             CCcEEEECC
Confidence            689999984

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=88.39  E-value=0.83  Score=39.28  Aligned_cols=78  Identities=15%  Similarity=0.038  Sum_probs=53.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCC-cC------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDV-SF------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~-~~------~~  191 (289)
                      +.+||=.|++ |.+|..+++.+  .+.+|++++.++..++.+.+.++..+. .++.++.+|+.+...-. .+      -+
T Consensus        32 ~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           32 DRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            6788888865 55677777643  468999999998877766666665554 35888888987643100 00      03


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      .+|+|+.|+
T Consensus       111 ~iD~vi~~A  119 (279)
T 1xg5_A          111 GVDICINNA  119 (279)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999884

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=88.35  E-value=0.47  Score=41.25  Aligned_cols=77  Identities=14%  Similarity=0.066  Sum_probs=52.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~  192 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+++|.+++.++.+.+.+...+ .++.++..|+.+...-.. .      -+.
T Consensus         8 gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (280)
T 3tox_A            8 GKIAIVTGASSG-IGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGG-GEAAALAGDVGDEALHEALVELAVRRFGG   85 (280)
T ss_dssp             TCEEEESSTTSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTT-CCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            678888887765 577776543  46899999999988776665554433 368888888876421100 0      136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        86 iD~lvnnA   93 (280)
T 3tox_A           86 LDTAFNNA   93 (280)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=88.29  E-value=0.32  Score=43.67  Aligned_cols=93  Identities=12%  Similarity=0.125  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceE
Q 022962          120 NSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDV  195 (289)
Q Consensus       120 ~~~~~VLDiGcG--~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~  195 (289)
                      +++.+||=.|++  .|..++.+|+...+.+|++++ +++..+.++     +|.+.+  +. +-.++...  ....+.+|+
T Consensus       141 ~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~~~--~~-~~~~~~~~~~~~~~~g~Dv  211 (349)
T 4a27_A          141 REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVTHL--FD-RNADYVQEVKRISAEGVDI  211 (349)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSSEE--EE-TTSCHHHHHHHHCTTCEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCcEE--Ec-CCccHHHHHHHhcCCCceE
Confidence            358899999984  344555566555567999999 444434332     455422  22 11111100  001257999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-..-..   .+..+.++|+++|++++.
T Consensus       212 v~d~~g~~---~~~~~~~~l~~~G~~v~~  237 (349)
T 4a27_A          212 VLDCLCGD---NTGKGLSLLKPLGTYILY  237 (349)
T ss_dssp             EEEECC----------CTTEEEEEEEEEE
T ss_pred             EEECCCch---hHHHHHHHhhcCCEEEEE
Confidence            99543221   236788999999999864

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=88.07  E-value=1.7  Score=37.44  Aligned_cols=76  Identities=20%  Similarity=0.217  Sum_probs=57.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--------CcCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--------VSFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--------~~~~~  191 (289)
                      ++.+|=-|.++|+ |..+|+.+  .+++|+.+|.+++.++.+.+.++..|. ++.+++.|+.+...-        ..+ +
T Consensus         7 gKvalVTGas~GI-G~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~-G   83 (254)
T 4fn4_A            7 NKVVIVTGAGSGI-GRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK-EVLGVKADVSKKKDVEEFVRRTFETY-S   83 (254)
T ss_dssp             TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH-S
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            7888888987774 66666553  478999999999998888888877774 688899998764311        011 4


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        84 ~iDiLVNNA   92 (254)
T 4fn4_A           84 RIDVLCNNA   92 (254)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999884

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=87.84  E-value=1.2  Score=37.75  Aligned_cols=77  Identities=10%  Similarity=-0.037  Sum_probs=52.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC--------cCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV--------SFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~--------~~~~  191 (289)
                      +.+||=.|++ |.+|..+++.+  .+.+|+++|.+++.++.+.+..+..+. ++.++.+|+.+...-.        .+.+
T Consensus         9 ~k~vlVTGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~g   86 (260)
T 2ae2_A            9 GCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHFHG   86 (260)
T ss_dssp             TCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            6788988875 45677776543  468999999998877665555554443 5888889987642100        0114


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        87 ~id~lv~~A   95 (260)
T 2ae2_A           87 KLNILVNNA   95 (260)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999884

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=87.82  E-value=0.59  Score=40.05  Aligned_cols=78  Identities=15%  Similarity=-0.014  Sum_probs=55.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~  192 (289)
                      +.++|=.|.++| +|..+|+.+  .+.+|+.+|.+++.++.+.+..+..+..++.++..|+.+...-.. .      -+.
T Consensus        10 ~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (262)
T 3pk0_A           10 GRSVVVTGGTKG-IGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGG   88 (262)
T ss_dssp             TCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            678888887655 677777653  468999999999888777766666554478999999876431100 0      136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        89 id~lvnnA   96 (262)
T 3pk0_A           89 IDVVCANA   96 (262)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=87.74  E-value=0.46  Score=42.78  Aligned_cols=100  Identities=8%  Similarity=0.006  Sum_probs=55.2

Q ss_pred             CCC-CeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccc--cccCC---CCc--C
Q 022962          120 NSN-LKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA--ETLGK---DVS--F  189 (289)
Q Consensus       120 ~~~-~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~--~~~~~---~~~--~  189 (289)
                      +++ .+||=.|+  |.|..++.+|+.. +++|+++..+.+.+...++.++++|.+.+ +-..+.  .++..   ...  .
T Consensus       165 ~~g~~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~~i~~~t~~~  242 (364)
T 1gu7_A          165 TPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQV-ITEDQNNSREFGPTIKEWIKQS  242 (364)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEE-EEHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCccccHHHHHHHHhcCCeEE-EecCccchHHHHHHHHHHhhcc
Confidence            347 89999987  3455666677664 56888887655442222334456776432 111110  11100   000  0


Q ss_pred             CCCceEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          190 REQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       190 ~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ...+|+|+-..-.  ..+. .+.++|+++|+++..
T Consensus       243 ~~g~Dvvid~~G~--~~~~-~~~~~l~~~G~~v~~  274 (364)
T 1gu7_A          243 GGEAKLALNCVGG--KSST-GIARKLNNNGLMLTY  274 (364)
T ss_dssp             TCCEEEEEESSCH--HHHH-HHHHTSCTTCEEEEC
T ss_pred             CCCceEEEECCCc--hhHH-HHHHHhccCCEEEEe
Confidence            2469999865422  1223 556899999998864

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=87.70  E-value=1.6  Score=39.50  Aligned_cols=96  Identities=11%  Similarity=0.098  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcC-C-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          120 NSNLKLVDVGT-G-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       120 ~~~~~VLDiGc-G-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +++.+||=.|+ | .|..++.+|+.. +++|++++ +++..+.+    +++|.+.+  +..+-.++.........+|+|+
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~----~~lGa~~v--~~~~~~~~~~~~~~~~g~D~vi  253 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELV----RKLGADDV--IDYKSGSVEEQLKSLKPFDFIL  253 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHH----HHTTCSEE--EETTSSCHHHHHHTSCCBSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHH----HHcCCCEE--EECCchHHHHHHhhcCCCCEEE
Confidence            35889999994 3 455666667665 56999999 66655544    45675422  2211111110000014699998


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      -+.-.. ...+..+.+.|+++|+++..
T Consensus       254 d~~g~~-~~~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          254 DNVGGS-TETWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             ESSCTT-HHHHGGGGBCSSSCCEEEES
T ss_pred             ECCCCh-hhhhHHHHHhhcCCcEEEEe
Confidence            664332 13457778899999998764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=87.56  E-value=1.7  Score=40.74  Aligned_cols=93  Identities=15%  Similarity=0.064  Sum_probs=56.4

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHH------------H-HcCCCCEEEEeccccccCCCCc
Q 022962          124 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAV------------S-LTQLLNVQIVRGRAETLGKDVS  188 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~------------~-~~~l~ni~~~~~d~~~~~~~~~  188 (289)
                      +|.=||+  |.+|..+|..+  .+.+|+++|++++.++.+++..            + .....++++ ..|..+..    
T Consensus         4 kI~VIG~--G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~----   76 (450)
T 3gg2_A            4 DIAVVGI--GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAV----   76 (450)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHG----
T ss_pred             EEEEECc--CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHH----
Confidence            5666765  67777776543  3579999999998887765510            0 000123443 23433311    


Q ss_pred             CCCCceEEEEcC-cc----------cHHHHHHHHccccccCeEEEEEE
Q 022962          189 FREQYDVAVARA-VA----------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       189 ~~~~fD~V~sn~-~~----------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                        ...|+|+..- ..          ....+++.+.+.|++|-.++...
T Consensus        77 --~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           77 --PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS  122 (450)
T ss_dssp             --GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             --hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence              2468888652 22          46788888888888876665544

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=87.50  E-value=0.8  Score=41.14  Aligned_cols=97  Identities=12%  Similarity=0.063  Sum_probs=52.3

Q ss_pred             CCCeEEEEcC--CCChHHHHHHHHCCCCEEE-EEeCChHHHHHHHHHHHHcCCCCEEEEecc---ccccCCCCcCCCCce
Q 022962          121 SNLKLVDVGT--GAGLPGLVLAIACPDWKVT-LLESMNKRCVFLEHAVSLTQLLNVQIVRGR---AETLGKDVSFREQYD  194 (289)
Q Consensus       121 ~~~~VLDiGc--G~G~~~l~la~~~p~~~V~-~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d---~~~~~~~~~~~~~fD  194 (289)
                      ++.+||=+|+  |.|..++.+|+.. +++++ .++.++..- ...+.++++|.+.+  +..+   .+++.........+|
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~-~~~~~~~~lGa~~v--i~~~~~~~~~~~~~~~~~~~~D  242 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRPDIQ-KLSDRLKSLGAEHV--ITEEELRRPEMKNFFKDMPQPR  242 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCSCHH-HHHHHHHHTTCSEE--EEHHHHHSGGGGGTTSSSCCCS
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCccchH-HHHHHHHhcCCcEE--EecCcchHHHHHHHHhCCCCce
Confidence            5889999997  4566677777765 45554 555544211 11233456776432  2211   112211000001489


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+-..-..  .+ ..+.++|+++|+++..
T Consensus       243 vvid~~g~~--~~-~~~~~~l~~~G~iv~~  269 (357)
T 1zsy_A          243 LALNCVGGK--SS-TELLRQLARGGTMVTY  269 (357)
T ss_dssp             EEEESSCHH--HH-HHHHTTSCTTCEEEEC
T ss_pred             EEEECCCcH--HH-HHHHHhhCCCCEEEEE
Confidence            988553221  22 3467899999999865

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=87.48  E-value=4.3  Score=35.71  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=25.3

Q ss_pred             CCceEEEEcCc-----------cc----HHHHHHHHccccccCeEEEEE
Q 022962          191 EQYDVAVARAV-----------AE----MRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       191 ~~fD~V~sn~~-----------~~----~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +++|+|+|+.-           .+    +.-+++.+..+|+|||.|++-
T Consensus       205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~K  253 (320)
T 2hwk_A          205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI  253 (320)
T ss_dssp             CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEE
T ss_pred             CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            57999999821           11    223677899999999999863

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=87.43  E-value=1.7  Score=37.29  Aligned_cols=77  Identities=14%  Similarity=0.046  Sum_probs=51.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC------------hHHHHHHHHHHHHcCCCCEEEEeccccccCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM------------NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV  187 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s------------~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~  187 (289)
                      +.++|=.|+++| +|..+|+.+  .+++|+.+|.+            .+.++...+..+..+. ++.++..|+.+...-.
T Consensus        10 ~k~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~   87 (281)
T 3s55_A           10 GKTALITGGARG-MGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGR-RCISAKVDVKDRAALE   87 (281)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHH
T ss_pred             CCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHH
Confidence            678999997655 577777653  46899999987            5555555555555553 6889999987642110


Q ss_pred             c-C------CCCceEEEEcC
Q 022962          188 S-F------REQYDVAVARA  200 (289)
Q Consensus       188 ~-~------~~~fD~V~sn~  200 (289)
                      . .      -+..|+++.|+
T Consensus        88 ~~~~~~~~~~g~id~lv~nA  107 (281)
T 3s55_A           88 SFVAEAEDTLGGIDIAITNA  107 (281)
T ss_dssp             HHHHHHHHHHTCCCEEEECC
T ss_pred             HHHHHHHHhcCCCCEEEECC
Confidence            0 0      13689999884

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=87.28  E-value=2.9  Score=36.91  Aligned_cols=109  Identities=17%  Similarity=0.170  Sum_probs=66.5

Q ss_pred             CeEEEEcCCCChHHHHHH---HHCCCCEEEE-EeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          123 LKLVDVGTGAGLPGLVLA---IACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la---~~~p~~~V~~-iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .+|.=||||.  +|..++   ...++.++++ +|.+++.   +++.++..+.   .  ..|.+++...    ...|+|+.
T Consensus         4 ~~vgiiG~G~--~g~~~~~~l~~~~~~~l~av~d~~~~~---~~~~~~~~~~---~--~~~~~~~l~~----~~~D~V~i   69 (331)
T 4hkt_A            4 VRFGLLGAGR--IGKVHAKAVSGNADARLVAVADAFPAA---AEAIAGAYGC---E--VRTIDAIEAA----ADIDAVVI   69 (331)
T ss_dssp             EEEEEECCSH--HHHHHHHHHHHCTTEEEEEEECSSHHH---HHHHHHHTTC---E--ECCHHHHHHC----TTCCEEEE
T ss_pred             eEEEEECCCH--HHHHHHHHHhhCCCcEEEEEECCCHHH---HHHHHHHhCC---C--cCCHHHHhcC----CCCCEEEE
Confidence            3677789864  343333   2357888885 7998876   3444455553   3  4566665331    35899886


Q ss_pred             cC-cccHHHHHHHHccccccCeEEEEEEc-CCcHHHHHHHHHHHHHhCCeEe
Q 022962          199 RA-VAEMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASLL  248 (289)
Q Consensus       199 n~-~~~~~~ll~~~~~~LkpgG~l~~~~g-~~~~~ei~~~~~~l~~~g~~~~  248 (289)
                      .. ......++.   .+|+.|-.++++++ ....++..++.+..++.|..+.
T Consensus        70 ~tp~~~h~~~~~---~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~  118 (331)
T 4hkt_A           70 CTPTDTHADLIE---RFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLM  118 (331)
T ss_dssp             CSCGGGHHHHHH---HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             eCCchhHHHHHH---HHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            53 222333333   35666777777776 3556777777777778876544

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=87.20  E-value=1.2  Score=37.37  Aligned_cols=102  Identities=11%  Similarity=0.065  Sum_probs=65.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEE-eCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc--------C-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS--------F-  189 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~i-D~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~--------~-  189 (289)
                      +.++|=.|+++| +|..+++.+  .+.+|+.+ +.+.+..+.........+. ++.++..|+.+......        + 
T Consensus         7 ~k~vlITGas~g-IG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (255)
T 3icc_A            7 GKVALVTGASRG-IGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGG-SAFSIGANLESLHGVEALYSSLDNELQ   84 (255)
T ss_dssp             TCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCh-HHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCC-ceEEEecCcCCHHHHHHHHHHHHHHhc
Confidence            678888888766 577776653  46788875 5666665555555555443 58888888876431100        0 


Q ss_pred             ----CCCceEEEEcCc------------c-----------cHHHHHHHHccccccCeEEEEEE
Q 022962          190 ----REQYDVAVARAV------------A-----------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       190 ----~~~fD~V~sn~~------------~-----------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                          ..+.|+++.|+-            .           ..-.+++.+.+.++++|++++..
T Consensus        85 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~is  147 (255)
T 3icc_A           85 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINIS  147 (255)
T ss_dssp             HHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             ccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeC
Confidence                024899999840            0           12345667778888899988764

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=87.16  E-value=1.4  Score=37.84  Aligned_cols=77  Identities=12%  Similarity=0.050  Sum_probs=51.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeC-------------ChHHHHHHHHHHHHcCCCCEEEEeccccccCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLES-------------MNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD  186 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~-------------s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~  186 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+++|.             +.+.++.+.+..+..+. ++.++..|+.+...-
T Consensus        11 ~k~~lVTGas~G-IG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v   88 (277)
T 3tsc_A           11 GRVAFITGAARG-QGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR-RIVAAVVDTRDFDRL   88 (277)
T ss_dssp             TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH
T ss_pred             CCEEEEECCccH-HHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHH
Confidence            678998997766 577766543  4789999998             56666655555555543 688899998764311


Q ss_pred             Cc-C------CCCceEEEEcC
Q 022962          187 VS-F------REQYDVAVARA  200 (289)
Q Consensus       187 ~~-~------~~~fD~V~sn~  200 (289)
                      .. .      -+..|+++.|+
T Consensus        89 ~~~~~~~~~~~g~id~lvnnA  109 (277)
T 3tsc_A           89 RKVVDDGVAALGRLDIIVANA  109 (277)
T ss_dssp             HHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHcCCCCEEEECC
Confidence            00 0      13689999984

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=87.16  E-value=2  Score=35.65  Aligned_cols=68  Identities=18%  Similarity=0.191  Sum_probs=47.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEecccc-ccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAE-TLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~-~~~~~~~~~~~fD~V~  197 (289)
                      +.+||=.|+ +|.+|..+++.+  .+.+|++++.++..++....       .++ +++.+|+. ++..  .+ +..|+|+
T Consensus        21 ~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~--~~-~~~D~vi   89 (236)
T 3e8x_A           21 GMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE-------RGASDIVVANLEEDFSH--AF-ASIDAVV   89 (236)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-------TTCSEEEECCTTSCCGG--GG-TTCSEEE
T ss_pred             CCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh-------CCCceEEEcccHHHHHH--HH-cCCCEEE
Confidence            778998885 577788877653  46899999999876544332       157 88999986 2211  12 4689999


Q ss_pred             EcC
Q 022962          198 ARA  200 (289)
Q Consensus       198 sn~  200 (289)
                      .++
T Consensus        90 ~~a   92 (236)
T 3e8x_A           90 FAA   92 (236)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            884

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=87.10  E-value=0.82  Score=39.50  Aligned_cols=74  Identities=18%  Similarity=0.104  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~  192 (289)
                      +.++|=.|+++| +|..+++.+  .+.+|+++|.+++.++.+.+   ..+ .++.++..|+.+...-.. .      -+.
T Consensus        28 ~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  102 (272)
T 4dyv_A           28 KKIAIVTGAGSG-VGRAVAVALAGAGYGVALAGRRLDALQETAA---EIG-DDALCVPTDVTDPDSVRALFTATVEKFGR  102 (272)
T ss_dssp             CCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HHT-SCCEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HhC-CCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            667887787655 577776653  46899999999877654443   333 368888999876431100 0      136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus       103 iD~lVnnA  110 (272)
T 4dyv_A          103 VDVLFNNA  110 (272)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=86.99  E-value=1.9  Score=37.14  Aligned_cols=77  Identities=10%  Similarity=0.016  Sum_probs=53.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~  192 (289)
                      +.+||=.|++ |.+|..+++.+  .+.+|++++.++..++.+.+.....+..++.++.+|+.+...-.. .      -+.
T Consensus        28 ~k~vlITGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  106 (286)
T 1xu9_A           28 GKKVIVTGAS-KGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG  106 (286)
T ss_dssp             TCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            6789988865 55677777643  468999999999887776665555554468889999876421000 0      136


Q ss_pred             ceEEEEc
Q 022962          193 YDVAVAR  199 (289)
Q Consensus       193 fD~V~sn  199 (289)
                      .|+++.|
T Consensus       107 iD~li~n  113 (286)
T 1xu9_A          107 LDMLILN  113 (286)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            8999987

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=86.97  E-value=1.1  Score=32.58  Aligned_cols=70  Identities=17%  Similarity=0.181  Sum_probs=45.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +.+|+=+|+  |.+|..++...  .+ .+|+++|.+++.++.+.    .   .++.++..|+.+...-...-..+|+|+.
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~---~~~~~~~~d~~~~~~~~~~~~~~d~vi~   75 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R---MGVATKQVDAKDEAGLAKALGGFDAVIS   75 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T---TTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h---CCCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence            468999988  77777766542  24 78999999987765544    1   2466777777653210001136899997


Q ss_pred             cC
Q 022962          199 RA  200 (289)
Q Consensus       199 n~  200 (289)
                      ..
T Consensus        76 ~~   77 (118)
T 3ic5_A           76 AA   77 (118)
T ss_dssp             CS
T ss_pred             CC
Confidence            75

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=86.92  E-value=2.6  Score=35.72  Aligned_cols=77  Identities=13%  Similarity=-0.030  Sum_probs=52.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC----c----CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----S----FRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~----~----~~~  191 (289)
                      +.++|=.|++ |.+|..+++.+  .+.+|+++|.+++.++.+.+..+..+. ++.++..|+.+...-.    .    .-+
T Consensus         5 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   82 (260)
T 2qq5_A            5 GQVCVVTGAS-RGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGG-QCVPVVCDSSQESEVRSLFEQVDREQQG   82 (260)
T ss_dssp             TCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSS-EEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            5678888865 45677777653  468999999998877666555554442 5888899987642100    0    014


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        83 ~id~lvnnA   91 (260)
T 2qq5_A           83 RLDVLVNNA   91 (260)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEECC
Confidence            689999987

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=86.91  E-value=1.5  Score=37.86  Aligned_cols=102  Identities=16%  Similarity=0.178  Sum_probs=62.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHH-HHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKR-CVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~-l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.++|=.|+++| +|..+++.+  .+.+|++++.+... .+.+.+.++..+. ++.++..|+.+...-.. +      -+
T Consensus        29 ~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g  106 (283)
T 1g0o_A           29 GKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKIFG  106 (283)
T ss_dssp             TCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCC-CeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            678888887554 677777653  46899999988643 3433344444443 58888888875421000 0      13


Q ss_pred             CceEEEEcCc------------cc-----------HHHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV------------AE-----------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~------------~~-----------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..|+++.|+-            .+           .-.+++.+.+.++.+|.+++..
T Consensus       107 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  163 (283)
T 1g0o_A          107 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  163 (283)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            6899998841            01           1234456666666788988764

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=86.79  E-value=1.5  Score=37.89  Aligned_cols=74  Identities=18%  Similarity=0.069  Sum_probs=49.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~  192 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+++|.+++.++.+.+   ..+. ++.++..|+.+...-.. .      -+.
T Consensus        29 gk~vlVTGas~g-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~---~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (277)
T 3gvc_A           29 GKVAIVTGAGAG-IGLAVARRLADEGCHVLCADIDGDAADAAAT---KIGC-GAAACRVDVSDEQQIIAMVDACVAAFGG  103 (277)
T ss_dssp             TCEEEETTTTST-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---HHCS-SCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HcCC-cceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            678888897766 466666543  46899999999877655443   3342 58888889876431100 0      136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus       104 iD~lvnnA  111 (277)
T 3gvc_A          104 VDKLVANA  111 (277)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=86.77  E-value=1.3  Score=38.18  Aligned_cols=77  Identities=12%  Similarity=-0.016  Sum_probs=52.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~  192 (289)
                      +.++|=.|+++ .+|..+++.+  .+.+|+++|.+++.++.+.+..+..+. ++.++.+|+.+...-.. +      -+.
T Consensus        22 ~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   99 (277)
T 2rhc_B           22 SEVALVTGATS-GIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYGP   99 (277)
T ss_dssp             SCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            67899889765 4677776543  468999999998877666555555443 58888899876421000 0      136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus       100 iD~lv~~A  107 (277)
T 2rhc_B          100 VDVLVNNA  107 (277)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=86.46  E-value=1.4  Score=37.80  Aligned_cols=102  Identities=12%  Similarity=-0.007  Sum_probs=63.5

Q ss_pred             CCeEEEEcCC-CChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-------CCC
Q 022962          122 NLKLVDVGTG-AGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FRE  191 (289)
Q Consensus       122 ~~~VLDiGcG-~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-------~~~  191 (289)
                      +.+||=.|++ +|.+|..+++.+  .+.+|+++|.+++.-+.+++..+..+  ++.++..|+.+...-..       .-+
T Consensus         6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN--SPYVYELDVSKEEHFKSLYNSVKKDLG   83 (275)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            6789999986 366788887653  46899999998752223333333333  46778888876421000       013


Q ss_pred             CceEEEEcCc--------c--------c-----------HHHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV--------A--------E-----------MRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~--------~--------~-----------~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..|+++.|+-        .        +           .-.+.+.+.+.++++|+++...
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  144 (275)
T 2pd4_A           84 SLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLS  144 (275)
T ss_dssp             CEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEe
Confidence            6899998841        0        0           1234566677777789988765

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=86.18  E-value=1.7  Score=37.30  Aligned_cols=77  Identities=17%  Similarity=0.119  Sum_probs=52.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeC-ChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLES-MNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~-s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+.++. ++...+.+.+..+..+. ++.++..|+.+...-.. .      -+
T Consensus        28 ~k~vlVTGas~g-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~v~~~~~~~~~~~g  105 (269)
T 4dmm_A           28 DRIALVTGASRG-IGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGG-EAFAVKADVSQESEVEALFAAVIERWG  105 (269)
T ss_dssp             TCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            678888887655 577776543  4689999998 66666666665665553 68889999886431100 0      13


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus       106 ~id~lv~nA  114 (269)
T 4dmm_A          106 RLDVLVNNA  114 (269)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999984

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=86.12  E-value=0.85  Score=38.86  Aligned_cols=77  Identities=13%  Similarity=0.051  Sum_probs=54.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~  192 (289)
                      +.++|=.|+++| +|..+++.+  .+.+|+.+|.+++.++.+.+..+..+. ++.++..|+.+...-.. .      -+.
T Consensus        12 ~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   89 (256)
T 3gaf_A           12 DAVAIVTGAAAG-IGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGG-KAIGLECNVTDEQHREAVIKAALDQFGK   89 (256)
T ss_dssp             TCEEEECSCSSH-HHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            678888887766 566666543  368999999999888777776666653 68899999876431100 0      136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        90 id~lv~nA   97 (256)
T 3gaf_A           90 ITVLVNNA   97 (256)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999984

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=86.06  E-value=2.2  Score=37.84  Aligned_cols=102  Identities=13%  Similarity=0.061  Sum_probs=61.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHC--CCC--EEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cCCCCcCCCCceEEE
Q 022962          123 LKLVDVGTGAGLPGLVLAIAC--PDW--KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAV  197 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~--p~~--~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~~~~~~~~~fD~V~  197 (289)
                      .+|.=||+  |.+|..+|...  .+.  +|+++|.+++.++.+.    +.|... . ...+..+ ..      ...|+|+
T Consensus        34 ~kI~IIG~--G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~----~~G~~~-~-~~~~~~~~~~------~~aDvVi   99 (314)
T 3ggo_A           34 QNVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID-E-GTTSIAKVED------FSPDFVM   99 (314)
T ss_dssp             SEEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS-E-EESCTTGGGG------GCCSEEE
T ss_pred             CEEEEEee--CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH----HCCCcc-h-hcCCHHHHhh------ccCCEEE
Confidence            57888886  45665555432  234  8999999998776654    345321 1 2234433 21      3579988


Q ss_pred             Ec-CcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHH
Q 022962          198 AR-AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERA  239 (289)
Q Consensus       198 sn-~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~  239 (289)
                      .. .......+++++...+++|..++- .+......+..+.+.
T Consensus       100 lavp~~~~~~vl~~l~~~l~~~~iv~d-~~Svk~~~~~~~~~~  141 (314)
T 3ggo_A          100 LSSPVRTFREIAKKLSYILSEDATVTD-QGSVKGKLVYDLENI  141 (314)
T ss_dssp             ECSCGGGHHHHHHHHHHHSCTTCEEEE-CCSCCTHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHhhccCCCcEEEE-CCCCcHHHHHHHHHh
Confidence            65 445567888888888988876653 333333334444443

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=86.04  E-value=1.9  Score=36.66  Aligned_cols=102  Identities=10%  Similarity=0.044  Sum_probs=61.6

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCC
Q 022962          122 NLKLVDVGTGA-GLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~-G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~  191 (289)
                      +.+||=.|+++ |.+|..+++.+  .+++|+++|.++...+.+++.....+  +..++..|+.+...-.       ..-+
T Consensus         9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A            9 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcC--CcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            66888889762 66788877653  46899999998732223333333333  3467788887642100       0013


Q ss_pred             CceEEEEcCc--------ccH--------------------HHHHHHHccccccCeEEEEEE
Q 022962          192 QYDVAVARAV--------AEM--------------------RILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       192 ~fD~V~sn~~--------~~~--------------------~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..|+++.|+-        ..+                    -.+++.+.+.++++|+++...
T Consensus        87 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (265)
T 1qsg_A           87 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS  148 (265)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEc
Confidence            6899998851        111                    124556677777788888765

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=86.03  E-value=1.4  Score=37.54  Aligned_cols=77  Identities=19%  Similarity=0.210  Sum_probs=52.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEE-eCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~i-D~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.++|=.|+++| +|..+++.+  .+.+|+.+ +.+++.++.+.+..+..+. ++.++.+|+.+...-.. +      -+
T Consensus         4 ~k~vlVTGas~g-IG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (258)
T 3oid_A            4 NKCALVTGSSRG-VGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGV-KVLVVKANVGQPAKIKEMFQQIDETFG   81 (258)
T ss_dssp             CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEecCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            667888886655 677777653  46788886 8888877766666665553 68899999876431100 0      13


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        82 ~id~lv~nA   90 (258)
T 3oid_A           82 RLDVFVNNA   90 (258)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            679999984

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=85.96  E-value=4.1  Score=33.27  Aligned_cols=94  Identities=15%  Similarity=0.088  Sum_probs=55.9

Q ss_pred             eEEEEcCCCChHHHHHHHH---CCCCEEEEEeCChH-HHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          124 KLVDVGTGAGLPGLVLAIA---CPDWKVTLLESMNK-RCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~---~p~~~V~~iD~s~~-~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +||=.|. +|.+|..+++.   ..+.+|++++.+++ .++...    .. ..++.++.+|+.+...-...-+.+|+|+.+
T Consensus         7 ~vlVtGa-sg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~   80 (221)
T 3r6d_A            7 YITILGA-AGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----ID-HERVTVIEGSFQNPGXLEQAVTNAEVVFVG   80 (221)
T ss_dssp             EEEEEST-TSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----HT-STTEEEEECCTTCHHHHHHHHTTCSEEEES
T ss_pred             EEEEEeC-CcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----cC-CCceEEEECCCCCHHHHHHHHcCCCEEEEc
Confidence            5888884 56678777654   25689999999986 443322    11 236899999997643110111368999988


Q ss_pred             Ccc-cHHHHHHHHcccccc--CeEEEEEE
Q 022962          200 AVA-EMRILAEYCLPLVRV--GGLFVAAK  225 (289)
Q Consensus       200 ~~~-~~~~ll~~~~~~Lkp--gG~l~~~~  225 (289)
                      +-. +..  .+.+.+.++.  .|++++..
T Consensus        81 ag~~n~~--~~~~~~~~~~~~~~~iv~iS  107 (221)
T 3r6d_A           81 AMESGSD--MASIVKALSRXNIRRVIGVS  107 (221)
T ss_dssp             CCCCHHH--HHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCChh--HHHHHHHHHhcCCCeEEEEe
Confidence            632 332  3333333332  35777654

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=85.77  E-value=0.76  Score=39.68  Aligned_cols=77  Identities=12%  Similarity=0.057  Sum_probs=54.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-------CCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-------~~~~  192 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+.+|.+++.++.+.+..+..+. ++.++..|+.+...-..       .-+.
T Consensus        26 gk~~lVTGas~g-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           26 GRTALVTGSSRG-LGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGH-DAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             TCEEEETTCSSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            678888886555 677777653  468999999999888777776666553 68888899876431100       0136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus       104 iD~lv~nA  111 (271)
T 4ibo_A          104 VDILVNNA  111 (271)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999984

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=85.69  E-value=1.4  Score=37.30  Aligned_cols=77  Identities=13%  Similarity=-0.015  Sum_probs=51.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~~  192 (289)
                      +.++|=.|++ |.+|..+++.+  .+.+|+++|.+++.++.+.+..+..+. ++.++..|+.+...-. .+      -+.
T Consensus        14 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g~   91 (260)
T 2zat_A           14 NKVALVTAST-DGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGL-SVTGTVCHVGKAEDRERLVAMAVNLHGG   91 (260)
T ss_dssp             TCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            6788888865 45677777643  468999999998877665555555443 5888888887542100 00      136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        92 iD~lv~~A   99 (260)
T 2zat_A           92 VDILVSNA   99 (260)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=85.65  E-value=0.78  Score=38.56  Aligned_cols=77  Identities=14%  Similarity=0.001  Sum_probs=50.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC-hHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-CC------C
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM-NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FR------E  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s-~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~~------~  191 (289)
                      +.+||=.|+ +|.+|..+++.+  .+.+|+++|.+ +..++.+.+..+..+ .++.++.+|+.+...-.. +.      +
T Consensus         7 ~k~vlVTGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (258)
T 3afn_B            7 GKRVLITGS-SQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADG-GDAAFFAADLATSEACQQLVDEFVAKFG   84 (258)
T ss_dssp             TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            568887776 466787777653  46799999998 666555555444444 368889999876431100 00      2


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+|+.|+
T Consensus        85 ~id~vi~~A   93 (258)
T 3afn_B           85 GIDVLINNA   93 (258)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999884

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=85.62  E-value=6.3  Score=33.00  Aligned_cols=77  Identities=14%  Similarity=0.159  Sum_probs=46.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCE-EEEEeCChHHHHHHHHHHHHcCCCCEEEEecccccc-CCCC-cC------C
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL-GKDV-SF------R  190 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~-V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~-~~~~-~~------~  190 (289)
                      +.+||=.|+ +|.+|..+++.+  .+.+ |+++|.++.. +.+++..+...-.++.++..|+.+. ..-. ..      -
T Consensus         5 ~k~vlVtGa-s~gIG~~~a~~l~~~G~~~v~~~~r~~~~-~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            5 NKNVIFVAA-LGGIGLDTSRELVKRNLKNFVILDRVENP-TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHHTCCSEEEEEESSCCH-HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECC-CChHHHHHHHHHHHCCCcEEEEEecCchH-HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            668888886 567788887654  3454 9999988632 2222222222223588888998764 2100 00      0


Q ss_pred             CCceEEEEcC
Q 022962          191 EQYDVAVARA  200 (289)
Q Consensus       191 ~~fD~V~sn~  200 (289)
                      +..|+++.|+
T Consensus        83 g~id~lv~~A   92 (254)
T 1sby_A           83 KTVDILINGA   92 (254)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            3689999885

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=85.59  E-value=3.4  Score=35.97  Aligned_cols=59  Identities=14%  Similarity=0.184  Sum_probs=36.2

Q ss_pred             CCceEEEEcC---------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHH-HHHHHHHhCCeEeEEe
Q 022962          191 EQYDVAVARA---------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKN-SERAVQLMGASLLQLC  251 (289)
Q Consensus       191 ~~fD~V~sn~---------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~-~~~~l~~~g~~~~~~~  251 (289)
                      +.||+|+.|.               -..+.-+-..+.+.|+|||.+++ ++....+...+ +..++ ...|.-.+++
T Consensus       210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~-~aYGyADR~SE~vV~al-ARkF~~~rv~  284 (324)
T 3trk_A          210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLI-RAYGYADRTSERVICVL-GRKFRSSRAL  284 (324)
T ss_dssp             CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEE-EECCCCSHHHHHHHHHH-HTTEEEEEEE
T ss_pred             CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEE-EeecccccchHHHHHHH-Hhhheeeeee
Confidence            6899999993               11345666789999999999986 44333332222 22222 3456555554

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=85.32  E-value=1.3  Score=38.41  Aligned_cols=102  Identities=13%  Similarity=0.134  Sum_probs=63.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChH-------HHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C--
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNK-------RCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F--  189 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~-------~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~--  189 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+++|.++.       .++.+.+..+..+. ++.++..|+.+...-.. +  
T Consensus         9 ~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~   86 (285)
T 3sc4_A            9 GKTMFISGGSRG-IGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG-QALPIVGDIRDGDAVAAAVAK   86 (285)
T ss_dssp             TCEEEEESCSSH-HHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTS-EEEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHH
Confidence            678998998766 577776653  4689999999875       33344444444443 68899999876431100 0  


Q ss_pred             ----CCCceEEEEcCc------------cc-----------HHHHHHHHccccc--cCeEEEEEE
Q 022962          190 ----REQYDVAVARAV------------AE-----------MRILAEYCLPLVR--VGGLFVAAK  225 (289)
Q Consensus       190 ----~~~fD~V~sn~~------------~~-----------~~~ll~~~~~~Lk--pgG~l~~~~  225 (289)
                          -+..|+++.|+-            .+           .-.+.+.+.+.++  .+|.++...
T Consensus        87 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~is  151 (285)
T 3sc4_A           87 TVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLS  151 (285)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECC
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence                137899999841            11           1235566666665  357877654

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=85.26  E-value=4.4  Score=38.10  Aligned_cols=116  Identities=9%  Similarity=0.019  Sum_probs=70.4

Q ss_pred             CCeEEEEcCCC--ChHHHHHH---HHC-CCCEEE-EEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCce
Q 022962          122 NLKLVDVGTGA--GLPGLVLA---IAC-PDWKVT-LLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYD  194 (289)
Q Consensus       122 ~~~VLDiGcG~--G~~~l~la---~~~-p~~~V~-~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD  194 (289)
                      ..+|.=||||.  |..+...+   ... ++.+++ .+|.+++.   +++.++.++...+.+ ..|++++...    ...|
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~---a~~~a~~~g~~~~~~-~~d~~ell~~----~~vD  110 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKS---SLQTIEQLQLKHATG-FDSLESFAQY----KDID  110 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHH---HHHHHHHTTCTTCEE-ESCHHHHHHC----TTCS
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHH---HHHHHHHcCCCccee-eCCHHHHhcC----CCCC
Confidence            35899999975  66664333   234 677876 46888765   444555666643333 4566665331    4589


Q ss_pred             EEEEcCcccHHHHHHHHccccccC------eEEEEEEcC-CcHHHHHHHHHHHHHhC-CeE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVG------GLFVAAKGH-DPQEEVKNSERAVQLMG-ASL  247 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~Lkpg------G~l~~~~g~-~~~~ei~~~~~~l~~~g-~~~  247 (289)
                      +|+.......  -.+.+..+|+.|      -.++++++. ...++..++.+..++.| ..+
T Consensus       111 ~V~I~tp~~~--H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~  169 (479)
T 2nvw_A          111 MIVVSVKVPE--HYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQT  169 (479)
T ss_dssp             EEEECSCHHH--HHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEE
T ss_pred             EEEEcCCcHH--HHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence            9986643221  122233456666      567888853 45677777777777888 654

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=85.22  E-value=0.68  Score=43.44  Aligned_cols=39  Identities=21%  Similarity=0.169  Sum_probs=28.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHH
Q 022962          123 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEH  163 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~  163 (289)
                      .+|-=||+  |+.|+.+|..+  .+.+|+|+|++++.++..+.
T Consensus        22 ~~IaViGl--GYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~   62 (444)
T 3vtf_A           22 ASLSVLGL--GYVGVVHAVGFALLGHRVVGYDVNPSIVERLRA   62 (444)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHT
T ss_pred             CEEEEEcc--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHC
Confidence            46766755  67777776543  36799999999999887653

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=85.17  E-value=8.8  Score=34.36  Aligned_cols=115  Identities=17%  Similarity=0.125  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCCChH-HHHHHHHCCCCEEEE-EeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLP-GLVLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~-~l~la~~~p~~~V~~-iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ..+|.=||||.... ...-+...++.++++ +|.+++.   +++.++..+...   ...|++++...    ...|+|+..
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~---a~~~a~~~~~~~---~~~~~~~ll~~----~~vD~V~I~   95 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDAL---AAEFSAVYADAR---RIATAEEILED----ENIGLIVSA   95 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHH---HHHHHHHSSSCC---EESCHHHHHTC----TTCCEEEEC
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHH---HHHHHHHcCCCc---ccCCHHHHhcC----CCCCEEEEe
Confidence            35899999997653 222222247888765 5888765   445555665322   34677776432    458999864


Q ss_pred             CcccHHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHhCCeEe
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGASLL  248 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~g~~~~  248 (289)
                      .....  =.+.+..+|+-|=.++++++. ...++..++.+..++.|..+.
T Consensus        96 tp~~~--H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~  143 (361)
T 3u3x_A           96 AVSSE--RAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFS  143 (361)
T ss_dssp             CCHHH--HHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEE
T ss_pred             CChHH--HHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            32211  122333456667677777763 456667777777777776543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=85.15  E-value=2.4  Score=34.42  Aligned_cols=89  Identities=13%  Similarity=0.091  Sum_probs=56.5

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          124 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +||=.|+ +|.+|..+++.+  .+.+|++++.++..+...       . .+++++.+|+.+... ..+ ..+|+|+.++-
T Consensus         2 kvlVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------~-~~~~~~~~D~~d~~~-~~~-~~~d~vi~~ag   70 (221)
T 3ew7_A            2 KIGIIGA-TGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-------H-KDINILQKDIFDLTL-SDL-SDQNVVVDAYG   70 (221)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH-------C-SSSEEEECCGGGCCH-HHH-TTCSEEEECCC
T ss_pred             eEEEEcC-CchhHHHHHHHHHhCCCEEEEEEcCchhhhhc-------c-CCCeEEeccccChhh-hhh-cCCCEEEECCc
Confidence            4665664 677888877653  468999999998654322       1 468899999987643 112 46899998852


Q ss_pred             c----------cHHHHHHHHccccccCeEEEEEE
Q 022962          202 A----------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       202 ~----------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .          ....+++.+.+.  ..+++++..
T Consensus        71 ~~~~~~~~~~~~~~~l~~a~~~~--~~~~~v~~S  102 (221)
T 3ew7_A           71 ISPDEAEKHVTSLDHLISVLNGT--VSPRLLVVG  102 (221)
T ss_dssp             SSTTTTTSHHHHHHHHHHHHCSC--CSSEEEEEC
T ss_pred             CCccccchHHHHHHHHHHHHHhc--CCceEEEEe
Confidence            1          124555555443  246776653

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=85.14  E-value=2  Score=37.01  Aligned_cols=77  Identities=8%  Similarity=-0.079  Sum_probs=48.5

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGA-GLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~-G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.+||=.|+++ |.+|..+++.+  .+.+|+++|.+++.-+.+++..+..+  ++.++.+|+.+...-.. +      -+
T Consensus        21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           21 GKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFG--SDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            67899889863 66788777653  46899999998753223333333333  36778888876421000 0      13


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        99 ~iD~lv~~A  107 (285)
T 2p91_A           99 SLDIIVHSI  107 (285)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999884

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=85.09  E-value=3.4  Score=37.38  Aligned_cols=115  Identities=10%  Similarity=0.116  Sum_probs=71.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ..+|.=||+  |.+|..+|...  .+.+|+++|.+++.++.+.+    .+.   .+ ..+..++...   ....|+|+..
T Consensus        22 ~mkIgiIGl--G~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~----~g~---~~-~~s~~e~~~~---a~~~DvVi~~   88 (358)
T 4e21_A           22 SMQIGMIGL--GRMGADMVRRLRKGGHECVVYDLNVNAVQALER----EGI---AG-ARSIEEFCAK---LVKPRVVWLM   88 (358)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT----TTC---BC-CSSHHHHHHH---SCSSCEEEEC
T ss_pred             CCEEEEECc--hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----CCC---EE-eCCHHHHHhc---CCCCCEEEEe
Confidence            467888876  56676666532  35799999999987665543    232   21 2233333211   1345999875


Q ss_pred             -CcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          200 -AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       200 -~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                       .....+.+++.+...|++|..++ ..+.........+.+.+...|...+..
T Consensus        89 vp~~~v~~vl~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~l~~~g~~~vda  139 (358)
T 4e21_A           89 VPAAVVDSMLQRMTPLLAANDIVI-DGGNSHYQDDIRRADQMRAQGITYVDV  139 (358)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTCEEE-ECSSCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEE-eCCCCChHHHHHHHHHHHHCCCEEEeC
Confidence             33367788888888898877655 344444444455566677778876665

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=84.97  E-value=1.7  Score=36.86  Aligned_cols=77  Identities=17%  Similarity=0.039  Sum_probs=51.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHc-CCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLT-QLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~-~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.++|=.|+++ .+|..+++.+  .+.+|+++|.+++.++.+.+..+.. +. ++.++.+|+.+...-.. +      -+
T Consensus         7 ~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (263)
T 3ai3_A            7 GKVAVITGSSS-GIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGV-RVLEVAVDVATPEGVDAVVESVRSSFG   84 (263)
T ss_dssp             TCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            67888888765 4677777643  4689999999987766554444433 43 68888999876421000 0      03


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        85 ~id~lv~~A   93 (263)
T 3ai3_A           85 GADILVNNA   93 (263)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999884

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=84.79  E-value=1.1  Score=40.62  Aligned_cols=94  Identities=11%  Similarity=0.129  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceEE
Q 022962          121 SNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDVA  196 (289)
Q Consensus       121 ~~~~VLDiGcG--~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~V  196 (289)
                      ++.+||=+|++  .|..++.+|+.. +++|+++. +++.++.++    ++|.+.  ++..+-.++...  ...++.+|+|
T Consensus       164 ~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~----~lGa~~--vi~~~~~~~~~~v~~~t~g~~d~v  235 (371)
T 3gqv_A          164 KPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAK----SRGAEE--VFDYRAPNLAQTIRTYTKNNLRYA  235 (371)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHH----HTTCSE--EEETTSTTHHHHHHHHTTTCCCEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHH----HcCCcE--EEECCCchHHHHHHHHccCCccEE
Confidence            58899999984  577777788775 56999986 777766554    467542  222211111100  0012459999


Q ss_pred             EEcCcccHHHHHHHHcccc-ccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLV-RVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~L-kpgG~l~~~  224 (289)
                      +-..-.  ...++.+.+.| +++|+++..
T Consensus       236 ~d~~g~--~~~~~~~~~~l~~~~G~iv~~  262 (371)
T 3gqv_A          236 LDCITN--VESTTFCFAAIGRAGGHYVSL  262 (371)
T ss_dssp             EESSCS--HHHHHHHHHHSCTTCEEEEES
T ss_pred             EECCCc--hHHHHHHHHHhhcCCCEEEEE
Confidence            855322  23455566677 689998763

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=84.71  E-value=2.2  Score=36.76  Aligned_cols=77  Identities=16%  Similarity=0.097  Sum_probs=52.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~  192 (289)
                      +.+||=.|++ |.+|..+++.+  .+.+|++++.++..++.+.+..+..+. ++.++.+|+.+...-.. +      -+.
T Consensus        44 ~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~~~  121 (285)
T 2c07_A           44 NKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHKN  121 (285)
T ss_dssp             SCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-ceeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            5688888865 55688887654  457999999888776655555554443 58888899876421100 0      136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+|+.|+
T Consensus       122 id~li~~A  129 (285)
T 2c07_A          122 VDILVNNA  129 (285)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=84.70  E-value=2.6  Score=35.96  Aligned_cols=77  Identities=14%  Similarity=0.168  Sum_probs=51.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEE-eCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~i-D~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~  191 (289)
                      +.+||=.|+++| +|..+|+.+  .+.+|+.+ +.+.+..+...+..+..+. ++.++..|+.+...-.. .      -+
T Consensus        26 ~k~vlITGas~g-IG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g  103 (272)
T 4e3z_A           26 TPVVLVTGGSRG-IGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGG-EAVAIPGDVGNAADIAAMFSAVDRQFG  103 (272)
T ss_dssp             SCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            567888886554 677777653  46788776 7777777766666665543 68899999876431100 0      03


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus       104 ~id~li~nA  112 (272)
T 4e3z_A          104 RLDGLVNNA  112 (272)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999884

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=84.67  E-value=1.2  Score=37.41  Aligned_cols=77  Identities=18%  Similarity=0.086  Sum_probs=49.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHH-HHcCCCCEEEEeccccccCCCC-cCC------C
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAV-SLTQLLNVQIVRGRAETLGKDV-SFR------E  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~-~~~~l~ni~~~~~d~~~~~~~~-~~~------~  191 (289)
                      +.++|=.|++ |.+|..+++.+  .+.+|+++|.++..++.+.+.. +..+ .++.++.+|+.+...-. .+.      +
T Consensus         2 ~k~vlItGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            2 SRVAIVTGAS-SGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYA-DKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTG-GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4578888864 56787777643  4679999999987765544433 2222 25888999987643110 000      2


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+|+.|+
T Consensus        80 ~id~li~~A   88 (250)
T 2cfc_A           80 AIDVLVNNA   88 (250)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999884

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=84.64  E-value=6.7  Score=36.72  Aligned_cols=99  Identities=13%  Similarity=0.100  Sum_probs=61.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChH---HHHHHHHHHHHc--------CCCCEEEEeccccccCCCCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNK---RCVFLEHAVSLT--------QLLNVQIVRGRAETLGKDVS  188 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~---~l~~a~~~~~~~--------~l~ni~~~~~d~~~~~~~~~  188 (289)
                      ..+||=.| |+|.+|..++...  .+.+|++++.++.   ......+..+..        ...+++++.+|+.+.+.-. 
T Consensus       150 ~~~VLVTG-atG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-  227 (508)
T 4f6l_B          150 LGNTLLTG-ATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-  227 (508)
T ss_dssp             CEEEEESC-TTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred             CCeEEEEC-CccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence            45788777 5799999988775  3478999998776   333333322221        1247999999998743221 


Q ss_pred             CCCCceEEEEcCc----------------ccHHHHHHHHccccccCeEEEEEE
Q 022962          189 FREQYDVAVARAV----------------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       189 ~~~~fD~V~sn~~----------------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ....+|+|+.++-                .....+++.+.+   .++.+++..
T Consensus       228 ~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~v~iS  277 (508)
T 4f6l_B          228 LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ---HHARLIYVS  277 (508)
T ss_dssp             CSSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHT---TTCEEEEEE
T ss_pred             CccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh---CCCcEEEeC
Confidence            2357999997641                123455665554   456666654

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=84.64  E-value=2.4  Score=37.70  Aligned_cols=113  Identities=12%  Similarity=-0.008  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCC-ChH-HHHHHHHCCCCEEEE-EeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          122 NLKLVDVGTGA-GLP-GLVLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       122 ~~~VLDiGcG~-G~~-~l~la~~~p~~~V~~-iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      -.+|-=||||. |.. -+......|+.+|+| +|.+++.   +++.+++++..+   ...|++++-..    ...|+|+.
T Consensus        23 mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~---a~~~a~~~g~~~---~y~d~~ell~~----~~iDaV~I   92 (350)
T 4had_A           23 MLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTR---AREMADRFSVPH---AFGSYEEMLAS----DVIDAVYI   92 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHH---HHHHHHHHTCSE---EESSHHHHHHC----SSCSEEEE
T ss_pred             ccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHH---HHHHHHHcCCCe---eeCCHHHHhcC----CCCCEEEE
Confidence            34788899974 321 123334568889886 5888765   556666777542   34677776432    46899986


Q ss_pred             cC-cccHHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHhCCeE
Q 022962          199 RA-VAEMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGASL  247 (289)
Q Consensus       199 n~-~~~~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~g~~~  247 (289)
                      .. ......+..   .+|+-|=.++++++. ...++..++.+..++.|..+
T Consensus        93 ~tP~~~H~~~~~---~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l  140 (350)
T 4had_A           93 PLPTSQHIEWSI---KAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVV  140 (350)
T ss_dssp             CSCGGGHHHHHH---HHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCE
T ss_pred             eCCCchhHHHHH---HHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCce
Confidence            53 222233332   234455566676653 23444455555555655543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=84.44  E-value=0.73  Score=37.95  Aligned_cols=90  Identities=16%  Similarity=0.054  Sum_probs=56.0

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cCCCCcCCCCceEEEEcC
Q 022962          124 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAVARA  200 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~~~~~~~~~fD~V~sn~  200 (289)
                      +||=.| |+|.+|..+++.+  .+.+|++++.++..+.         .+.+++++.+|+.+ ...-...-+.+|+|+.++
T Consensus         2 ~ilItG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~---------~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~a   71 (219)
T 3dqp_A            2 KIFIVG-STGRVGKSLLKSLSTTDYQIYAGARKVEQVP---------QYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVS   71 (219)
T ss_dssp             EEEEES-TTSHHHHHHHHHHTTSSCEEEEEESSGGGSC---------CCTTEEEEECCTTSCHHHHHTTTTTCSEEEECC
T ss_pred             eEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCccchh---------hcCCceEEEecccCCHHHHHHHHcCCCEEEECC
Confidence            566667 4688898888764  3579999999875322         12479999999987 321111114689999884


Q ss_pred             cc-----------cHHHHHHHHccccccCeEEEEEE
Q 022962          201 VA-----------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       201 ~~-----------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      -.           ....+++.+.+.  ..+++++..
T Consensus        72 g~~~~~~~~~n~~~~~~l~~a~~~~--~~~~iv~~S  105 (219)
T 3dqp_A           72 GSGGKSLLKVDLYGAVKLMQAAEKA--EVKRFILLS  105 (219)
T ss_dssp             CCTTSSCCCCCCHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred             cCCCCCcEeEeHHHHHHHHHHHHHh--CCCEEEEEC
Confidence            21           134555555321  225777654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=84.37  E-value=1.7  Score=37.60  Aligned_cols=109  Identities=17%  Similarity=0.122  Sum_probs=66.3

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          124 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +|.=||+  |.+|..+|...  .+.+|+++|.+++.++.+.+    .+   +.+ ..+..+..      ...|+|+..-.
T Consensus         3 ~i~iIG~--G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~----~g---~~~-~~~~~~~~------~~aDvvi~~vp   66 (287)
T 3pef_A            3 KFGFIGL--GIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA----LG---AER-AATPCEVV------ESCPVTFAMLA   66 (287)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH----TT---CEE-CSSHHHHH------HHCSEEEECCS
T ss_pred             EEEEEee--cHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----CC---Cee-cCCHHHHH------hcCCEEEEEcC
Confidence            5666766  56776666542  35799999999987665544    23   322 23333321      23698887633


Q ss_pred             --ccHHHHH---HHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeE
Q 022962          202 --AEMRILA---EYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       202 --~~~~~ll---~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                        ...+.++   +.+...+++|..++- .+.........+.+.+...|...+.
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~~~vi~-~st~~~~~~~~~~~~~~~~g~~~~~  118 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEGRGYVD-MSTVDPATSQRIGVAVVAKGGRFLE  118 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEe-CCCCCHHHHHHHHHHHHHhCCEEEE
Confidence              3456666   666677888776654 3444445555666667777876554

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=84.34  E-value=3.9  Score=34.10  Aligned_cols=77  Identities=12%  Similarity=-0.010  Sum_probs=54.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~  192 (289)
                      +.++|=.|++ |.+|..+++.+  .+.+|++++.++..++.+.+..+..+. ++.++..|+.+...-.       ...+.
T Consensus         5 ~k~vlITGas-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (247)
T 3lyl_A            5 EKVALVTGAS-RGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF-KARGLVLNISDIESIQNFFAEIKAENLA   82 (247)
T ss_dssp             TCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            6688888865 45677776543  468999999999888877777766654 6889999987642110       01136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        83 id~li~~A   90 (247)
T 3lyl_A           83 IDILVNNA   90 (247)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=84.31  E-value=1  Score=38.96  Aligned_cols=76  Identities=13%  Similarity=0.099  Sum_probs=50.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~  192 (289)
                      +.+||=.|+++ .+|..+++.+  .+.+|+++|.+++.++...+.....+  ++.++..|+.+...-.       ..-+.
T Consensus        29 ~k~vlVTGas~-gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (276)
T 2b4q_A           29 GRIALVTGGSR-GIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG--DCQAIPADLSSEAGARRLAQALGELSAR  105 (276)
T ss_dssp             TCEEEEETTTS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSS--CEEECCCCTTSHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            67889888754 5677777653  46899999999877665544443333  6888888887642100       00136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus       106 iD~lvnnA  113 (276)
T 2b4q_A          106 LDILVNNA  113 (276)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999884

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=84.30  E-value=4.5  Score=34.33  Aligned_cols=77  Identities=19%  Similarity=0.135  Sum_probs=55.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-------CCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-------~~~~  192 (289)
                      +.++|=.|+++| +|..+|+.+  .+.+|+++|.+++.++.+.+.....+. ++.++..|+.+...-..       .-+.
T Consensus        11 ~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A           11 DKVVVISGVGPA-LGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGR-RALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TCEEEEESCCTT-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CcEEEEECCCcH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            678999998777 466666543  478999999999888877776666653 68899999886431100       0136


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        89 id~lv~nA   96 (264)
T 3ucx_A           89 VDVVINNA   96 (264)
T ss_dssp             CSEEEECC
T ss_pred             CcEEEECC
Confidence            89999885

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=84.26  E-value=6.9  Score=34.88  Aligned_cols=112  Identities=13%  Similarity=0.024  Sum_probs=69.6

Q ss_pred             CCeEEEEcCCCChHHH----HHHHHCCCCEEEEE-eCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGL----VLAIACPDWKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l----~la~~~p~~~V~~i-D~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ..+|.=||||.  +|.    ......++.+++++ |.+++.   +++.++..+.   ... .|++++...    ...|+|
T Consensus        27 ~~rigiIG~G~--~g~~~~~~~l~~~~~~~l~av~d~~~~~---~~~~a~~~g~---~~~-~~~~~ll~~----~~~D~V   93 (350)
T 3rc1_A           27 PIRVGVIGCAD--IAWRRALPALEAEPLTEVTAIASRRWDR---AKRFTERFGG---EPV-EGYPALLER----DDVDAV   93 (350)
T ss_dssp             CEEEEEESCCH--HHHHTHHHHHHHCTTEEEEEEEESSHHH---HHHHHHHHCS---EEE-ESHHHHHTC----TTCSEE
T ss_pred             ceEEEEEcCcH--HHHHHHHHHHHhCCCeEEEEEEcCCHHH---HHHHHHHcCC---CCc-CCHHHHhcC----CCCCEE
Confidence            35788899873  333    22234577888755 988765   4444555554   333 677776432    468998


Q ss_pred             EEcC-cccHHHHHHHHccccccCeEEEEEEc-CCcHHHHHHHHHHHHHhCCeEeE
Q 022962          197 VARA-VAEMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       197 ~sn~-~~~~~~ll~~~~~~LkpgG~l~~~~g-~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                      +... ......++   ..+|+.|-.++++++ ....++..++.+..++.|..+..
T Consensus        94 ~i~tp~~~h~~~~---~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v  145 (350)
T 3rc1_A           94 YVPLPAVLHAEWI---DRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLME  145 (350)
T ss_dssp             EECCCGGGHHHHH---HHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             EECCCcHHHHHHH---HHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence            8653 22233333   345667777888886 35677778888888888876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d1xdza_	239	c.66.1.20 (A:) Glucose-inhibited division protein	2e-56
d1jsxa_	207	c.66.1.20 (A:) Glucose-inhibited division protein	2e-33

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} Length = 239

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

 Score =  179 bits (456), Expect = 2e-56
 Identities = 91/232 (39%), Positives = 126/232 (54%), Gaps = 10/232 (4%)

Query: 58  TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDS 117
           +L+ RQ EQ  LY D L++WN K+NLT++ +  EV  +H  DS+     +  +  +    
Sbjct: 17  SLSPRQLEQFELYYDMLVEWNEKINLTSITEKKEVYLKHFYDSITAAFYVDFNQVNTIC- 75

Query: 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR 177
                    DVG GAG P L + I  P   VT+++S+NKR  FLE      QL N     
Sbjct: 76  ---------DVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCH 126

Query: 178 GRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 237
            RAET G+    RE YD+  ARAVA + +L+E CLPLV+  GLFVA K    +EE+   +
Sbjct: 127 DRAETFGQRKDVRESYDIVTARAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGK 186

Query: 238 RAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289
           +A+  +G  L  + S +       R  +V  K + TPKKYPR PGTP K P+
Sbjct: 187 KAITTLGGELENIHSFKLPIEESDRNIMVIRKIKNTPKKYPRKPGTPNKSPI 238

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} Length = 207

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

 Score =  119 bits (299), Expect = 2e-33
 Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 17/199 (8%)

Query: 59  LNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSS 118
           L   Q+ Q+  YV+ L +WN+  NLT+V+D NE++ RHI DS+ + P ++          
Sbjct: 16  LTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQGERF------ 69

Query: 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG 178
                  +DVGTG GLPG+ L+I  P+   TLL+S+ KR  FL       +L N++ V+ 
Sbjct: 70  -------IDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQS 122

Query: 179 RAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSER 238
           R E           +D  ++RA A +  +  +C  L    G F A KG  P++E+     
Sbjct: 123 RVEEFPS----EPPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE 178

Query: 239 AVQLMGASLLQLCSVESQS 257
             Q+     LQ+ +++ + 
Sbjct: 179 EYQVESVVKLQVPALDGER 197

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	100.0
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	100.0
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.96
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.91
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.83
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.83
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.81
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.79
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.78
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.78
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.77
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.76
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.75
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.75
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.75
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.75
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.74
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.74
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.72
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.72
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.72
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.72
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.71
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.71
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.7
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.69
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.69
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.69
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.68
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.68
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.67
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.67
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.66
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.66
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.66
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.66
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.66
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.65
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.65
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.62
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.61
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.61
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.61
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.6
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.6
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.6
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.59
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.57
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.53
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.53
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.53
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.53
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.52
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.52
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.52
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.5
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.5
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.46
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.45
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.44
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.43
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.43
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.43
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.41
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.37
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.33
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.33
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.31
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.31
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.28
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.27
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.23
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.21
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.14
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.1
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.08
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.07
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.03
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.99
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.95
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.95
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.92
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.9
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.89
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.87
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.85
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.8
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.76
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.73
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.71
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.58
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.57
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.53
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.49
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.37
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.17
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.12
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.05
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.95
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.62
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.59
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.52
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.49
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.39
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.17
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.12
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.07
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.06
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.96
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.91
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.81
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.8
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.71
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.6
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.54
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.31
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.23
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.15
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.01
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.94
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.66
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.53
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.37
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.36
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.29
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.27
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.79
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.61
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.54
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.44
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.4
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.07
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	94.02
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	93.91
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.67
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.5
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.05
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	92.5
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.45
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.34
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	91.71
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.48
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.4
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	91.38
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.27
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	91.1
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	91.01
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.93
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	90.91
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	90.64
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	90.48
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	89.91
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	89.59
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	89.35
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.34
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	89.01
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	88.83
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	88.73
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	88.52
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	88.41
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	87.93
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	87.91
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.74
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	87.69
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	87.62
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	87.62
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	87.05
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	86.65
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	86.65
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	86.49
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	86.02
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	86.01
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	85.9
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.69
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	85.69
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	85.56
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	85.31
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	85.07
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	84.45
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	84.07
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	83.9
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	82.65
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	82.44
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	82.21
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	81.82
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	81.31
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	81.09
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	81.07
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	80.46
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	80.12
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	80.03

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.5e-41  Score=293.86  Aligned_cols=230  Identities=40%  Similarity=0.634  Sum_probs=212.5

Q ss_pred             hhhhccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEc
Q 022962           50 IVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVG  129 (289)
Q Consensus        50 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiG  129 (289)
                      ..+..+...+++++.++|..|.+++.+||+++||++.++.+++|.+|++||+.+...++.          ..+.+++|||
T Consensus         9 ~~l~~~g~~ls~~~~~~l~~y~~lL~~wN~~~NLts~~~~~~i~~rHi~DSl~~~~~~~~----------~~~~~ilDiG   78 (239)
T d1xdza_           9 SGLAEKGISLSPRQLEQFELYYDMLVEWNEKINLTSITEKKEVYLKHFYDSITAAFYVDF----------NQVNTICDVG   78 (239)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHSCCCSCCSHHHHHHHTHHHHHGGGGTSCG----------GGCCEEEEEC
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHhccchhhhhhhhcc----------cCCCeEEeec
Confidence            345567889999999999999999999999999999999999999999999988766542          1367999999


Q ss_pred             CCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcccHHHHHH
Q 022962          130 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAE  209 (289)
Q Consensus       130 cG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~~~~ll~  209 (289)
                      ||.|++|+.+|..+|+.+|+.+|.+.+.++++++.++.++++|+.+++++++++.......++||+|+|+|++++..+++
T Consensus        79 SGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAva~l~~ll~  158 (239)
T d1xdza_          79 AGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAVARLSVLSE  158 (239)
T ss_dssp             SSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECCSCHHHHHH
T ss_pred             CCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhhhhCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998865444557899999999999999999


Q ss_pred             HHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecCCCCCCCCCCCCCCcCCCC
Q 022962          210 YCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL  289 (289)
Q Consensus       210 ~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~~~p~~~pr~~g~~~~~~~  289 (289)
                      .+.+++++||.+++++|....+|+.++.+.+...|+.+.++..+..|..++.|++++++|.+++|++|||++|.|.|.||
T Consensus       159 ~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~i~K~~~~p~~yPR~~g~p~k~Pl  238 (239)
T d1xdza_         159 LCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIKNTPKKYPRKPGTPNKSPI  238 (239)
T ss_dssp             HHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECSCCCTTCSCSTTHHHHSCC
T ss_pred             HHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999888888888999999999999999999999999999998

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.7e-32  Score=230.82  Aligned_cols=200  Identities=32%  Similarity=0.509  Sum_probs=166.4

Q ss_pred             hhhhccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEc
Q 022962           50 IVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVG  129 (289)
Q Consensus        50 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiG  129 (289)
                      ..+..+...++++|.+++..|.+++.+||+++||++.++.+++|.+|++||+.+...++             +.+|+|+|
T Consensus         7 ~~l~~~g~~ls~~q~~~L~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~-------------~~~ilDiG   73 (207)
T d1jsxa_           7 LLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQ-------------GERFIDVG   73 (207)
T ss_dssp             HHHHTTTCCCCHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHGGGCC-------------SSEEEEET
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHHHHhCCceeeEECCCHHHHHHHHhcchHhhhhhhc-------------CCceeeee
Confidence            34566788999999999999999999999999999999999999999999999876542             56999999


Q ss_pred             CCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcccHHHHHH
Q 022962          130 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAE  209 (289)
Q Consensus       130 cG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~~~~ll~  209 (289)
                      ||.|++|+.+|..+|+.+|+++|.+.+.+.++++.+++++++|+++++++++++..    ..+||+|+|+|++++..+++
T Consensus        74 sGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~----~~~fD~V~sRA~~~~~~ll~  149 (207)
T d1jsxa_          74 TGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS----EPPFDGVISRAFASLNDMVS  149 (207)
T ss_dssp             CTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC----CSCEEEEECSCSSSHHHHHH
T ss_pred             ccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc----ccccceehhhhhcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998754    25899999999999999999


Q ss_pred             HHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecC
Q 022962          210 YCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR  271 (289)
Q Consensus       210 ~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~  271 (289)
                      .+.++++++|.+++++|....+|+..+     ..++++..+..+..|..+++|+++++++.+
T Consensus       150 ~~~~~l~~~g~~~~~KG~~~~eEl~~~-----~~~~~~~~~~~~~~p~~~~~R~iv~ikk~k  206 (207)
T d1jsxa_         150 WCHHLPGEQGRFYALKGQMPEDEIALL-----PEEYQVESVVKLQVPALDGERHLVVIKANK  206 (207)
T ss_dssp             HHTTSEEEEEEEEEEESSCCHHHHHTS-----CTTEEEEEEEEEECC--CCEEEEEEEEECC
T ss_pred             HHHHhcCCCcEEEEECCCCHHHHHHhh-----hcCCEEEEEEEecCCCCCCcEEEEEEEecc
Confidence            999999999999999999888887653     247777677767777778999999999863

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=7.5e-30  Score=225.97  Aligned_cols=203  Identities=18%  Similarity=0.227  Sum_probs=167.9

Q ss_pred             chhhhhhchhh------hhhhccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccc
Q 022962           39 RTRAKTLTTTR------IVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYT  112 (289)
Q Consensus        39 r~~~~~l~~~~------~~~~~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~  112 (289)
                      |.+++.|..+.      ........++++++.+++..+.+++.   ++.|++|+.+..+||+..|.....+++|+|+||+
T Consensus        20 ~~da~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~---~g~PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~   96 (274)
T d2b3ta1          20 RRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRR---DGEPIAHLTGVREFWSLPLFVSPATLIPRPDTEC   96 (274)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHTTTCBCCHHHHHHHHHHHHHHH---TTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHH
T ss_pred             HHHHHHHHHHHhCcCHHHHhhCCCCCCCHHHHHHHHHHHHHHh---cCcChhhhcCcEEEeeeEEEEeccccccccchhh
Confidence            45666666655      12333456789999888888888877   8999999999999999999999999999999996


Q ss_pred             c--ccC-CCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC
Q 022962          113 S--HCD-SSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF  189 (289)
Q Consensus       113 ~--~~~-~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~  189 (289)
                      +  .+. ....++.+|||+|||||++++.+|...|+.+|+|+|+|+.+++.|++|++.++++||+++++|+.+...    
T Consensus        97 lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~----  172 (274)
T d2b3ta1          97 LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA----  172 (274)
T ss_dssp             HHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT----
T ss_pred             hhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccC----
Confidence            5  221 122346789999999999999999999999999999999999999999999999889999999976422    


Q ss_pred             CCCceEEEEcC-----------------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHH
Q 022962          190 REQYDVAVARA-----------------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAV  240 (289)
Q Consensus       190 ~~~fD~V~sn~-----------------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l  240 (289)
                      +++||+|+||.                             ...+..+++.+.++|+|||.++++.|.++.+.+.++   +
T Consensus       173 ~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~---l  249 (274)
T d2b3ta1         173 GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQA---F  249 (274)
T ss_dssp             TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHH---H
T ss_pred             CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHH---H
Confidence            36899999992                             123678999999999999999999999998777654   4


Q ss_pred             HHhCCeEeEEe
Q 022962          241 QLMGASLLQLC  251 (289)
Q Consensus       241 ~~~g~~~~~~~  251 (289)
                      +..||..+++.
T Consensus       250 ~~~gf~~i~~~  260 (274)
T d2b3ta1         250 ILAGYHDVETC  260 (274)
T ss_dssp             HHTTCTTCCEE
T ss_pred             HHCCCCeEEEE
Confidence            58899765553

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=2e-25  Score=196.99  Aligned_cols=179  Identities=14%  Similarity=0.065  Sum_probs=144.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccCC--CCCCCCeEEEEcC
Q 022962           55 HFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCDS--SCNSNLKLVDVGT  130 (289)
Q Consensus        55 ~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~~--~~~~~~~VLDiGc  130 (289)
                      ...++++++..++..+.+++.   ++.|++|+.+..+||+..|..+..+++|+|+||++  .+..  ...+..+++|+||
T Consensus        43 ~~~~l~~~~~~~~~~~i~rR~---~~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~  119 (271)
T d1nv8a_          43 KDLGVSPTEEKRILELVEKRA---SGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGT  119 (271)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHH---TTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred             CCCCCCHHHHHHHHHHHHHhh---CCCChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhhccccccEEEEeee
Confidence            356789998888888888777   89999999999999999999999999999999965  1110  1112468999999


Q ss_pred             CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcC---------
Q 022962          131 GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA---------  200 (289)
Q Consensus       131 G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~---------  200 (289)
                      |+|++++.+|. +|+++|+|+|+|+++++.|++|++.+++.+ +.++++|+.+....  ..++||+|+||.         
T Consensus       120 GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~--~~~~fDlIVsNPPYI~~~~~l  196 (271)
T d1nv8a_         120 GSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE--KFASIEMILSNPPYVKSSAHL  196 (271)
T ss_dssp             TTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG--GTTTCCEEEECCCCBCGGGSC
T ss_pred             eeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc--ccCcccEEEEcccccCccccc
Confidence            99999999885 589999999999999999999999999875 78888988775331  236899999992         


Q ss_pred             ------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCC
Q 022962          201 ------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA  245 (289)
Q Consensus       201 ------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~  245 (289)
                                        ...++.++   .++|+|||+++++.|.++.+.+..+++   ..||
T Consensus       197 ~~~~~~EP~~AL~gg~dGl~~~r~i~---~~~L~~~G~l~~Eig~~Q~~~v~~l~~---~~g~  253 (271)
T d1nv8a_         197 PKDVLFEPPEALFGGEDGLDFYREFF---GRYDTSGKIVLMEIGEDQVEELKKIVS---DTVF  253 (271)
T ss_dssp             TTSCCCSCHHHHBCTTTSCHHHHHHH---HHCCCTTCEEEEECCTTCHHHHTTTST---TCEE
T ss_pred             ceeeeeccccccccccchHHHHHHHH---HHhcCCCCEEEEEECHHHHHHHHHHHH---hCCE
Confidence                              11234444   568999999999999999888876533   4554

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.83  E-value=2.7e-20  Score=159.02  Aligned_cols=130  Identities=16%  Similarity=0.190  Sum_probs=105.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++++.+|||||||+|..+..++..  ..+|+|+|+|+.|++.|+++++..+.+|++++++|+++++.+   +++||+|+|
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~---~~~fD~v~~   87 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT---DERFHIVTC   87 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC---TTCEEEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhccccccccccccccccccccccc---ccccccccc
Confidence            345889999999999999999876  469999999999999999999999999999999999998754   379999999


Q ss_pred             cC----cccHHHHHHHHccccccCeEEEEEEcC---Cc-HHHH------------------HHHHHHHHHhCCeEeEEee
Q 022962          199 RA----VAEMRILAEYCLPLVRVGGLFVAAKGH---DP-QEEV------------------KNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       199 n~----~~~~~~ll~~~~~~LkpgG~l~~~~g~---~~-~~ei------------------~~~~~~l~~~g~~~~~~~~  252 (289)
                      +.    +.++..+++++.++|||||++++....   .. ...+                  .++.+.++++||.++++..
T Consensus        88 ~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  167 (231)
T d1vl5a_          88 RIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHC  167 (231)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEE
T ss_pred             cccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence            84    458899999999999999999975321   11 1111                  3355678889998877654


Q ss_pred             e
Q 022962          253 V  253 (289)
Q Consensus       253 ~  253 (289)
                      +
T Consensus       168 ~  168 (231)
T d1vl5a_         168 F  168 (231)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=4e-20  Score=158.93  Aligned_cols=130  Identities=14%  Similarity=0.210  Sum_probs=105.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++++.+|||||||+|.++..++..  ..+|+|||+|+.|++.|+++++..+++|+.++++|+++++.+   +++||+|+|
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~---~~~fD~v~~   88 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP---DDSFDIITC   88 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC---TTCEEEEEE
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhccccccccccccccccccccc---ccccceeee
Confidence            456999999999999999999976  469999999999999999999999998999999999998754   379999999


Q ss_pred             cC----cccHHHHHHHHccccccCeEEEEEE-cCCcHHH---------------------HHHHHHHHHHhCCeEeEEee
Q 022962          199 RA----VAEMRILAEYCLPLVRVGGLFVAAK-GHDPQEE---------------------VKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       199 n~----~~~~~~ll~~~~~~LkpgG~l~~~~-g~~~~~e---------------------i~~~~~~l~~~g~~~~~~~~  252 (289)
                      +.    +.++..+++++.++|||||++++.. .......                     ..++...+...||.+.++..
T Consensus        89 ~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~  168 (234)
T d1xxla_          89 RYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK  168 (234)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             eceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCceeEEEE
Confidence            74    4578999999999999999998753 1111111                     12345567788998776654


Q ss_pred             e
Q 022962          253 V  253 (289)
Q Consensus       253 ~  253 (289)
                      +
T Consensus       169 ~  169 (234)
T d1xxla_         169 W  169 (234)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=9.1e-20  Score=159.21  Aligned_cols=134  Identities=18%  Similarity=0.124  Sum_probs=106.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ..++.+|||+|||+|.+++.+++.  +.+|+|+|+|+.|++.|++|++.+++ +++++++|+.+...    .++||+|++
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~-~~~~~~~d~~~~~~----~~~fD~V~a  190 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLEAALP----FGPFDLLVA  190 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTC-CCEEEESCHHHHGG----GCCEEEEEE
T ss_pred             cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCC-ceeEEecccccccc----ccccchhhh
Confidence            356899999999999999988764  57999999999999999999999998 47889999876432    378999999


Q ss_pred             cCcc-cHHHHHHHHccccccCeEEEEEEc--CCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962          199 RAVA-EMRILAEYCLPLVRVGGLFVAAKG--HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       199 n~~~-~~~~ll~~~~~~LkpgG~l~~~~g--~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      |... .+..+++.+.++|||||++++. |  ..+.+   .+.+.++.+||.+.+...      .+.+..++++|
T Consensus       191 ni~~~~l~~l~~~~~~~LkpGG~lilS-gil~~~~~---~v~~~~~~~Gf~~~~~~~------~~~Wv~l~~~r  254 (254)
T d2nxca1         191 NLYAELHAALAPRYREALVPGGRALLT-GILKDRAP---LVREAMAGAGFRPLEEAA------EGEWVLLAYGR  254 (254)
T ss_dssp             ECCHHHHHHHHHHHHHHEEEEEEEEEE-EEEGGGHH---HHHHHHHHTTCEEEEEEE------ETTEEEEEEEC
T ss_pred             ccccccHHHHHHHHHHhcCCCcEEEEE-ecchhhHH---HHHHHHHHCCCEEEEEEE------ECCEEEEEEeC
Confidence            9654 4678899999999999999873 3  23333   445567789999877652      24577666654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.79  E-value=1.1e-18  Score=145.35  Aligned_cols=121  Identities=21%  Similarity=0.164  Sum_probs=100.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .++.+|||+|||+|.+++.+|..  ..+|+|+|+|+.+++.|++|++.+|+. |++++++|+.+....   .+.||+|++
T Consensus        32 ~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~---~~~~D~v~~  106 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK---IPDIDIAVV  106 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT---SCCEEEEEE
T ss_pred             CCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccc---cCCcCEEEE
Confidence            35899999999999999999864  569999999999999999999999984 899999999887543   268999999


Q ss_pred             cC-cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeE
Q 022962          199 RA-VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASL  247 (289)
Q Consensus       199 n~-~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~  247 (289)
                      +. ...+..+++.+.+.|||||++++...  ..+....+.+.++..|+..
T Consensus       107 ~~~~~~~~~~~~~~~~~LkpgG~lvi~~~--~~e~~~~~~~~l~~~~~~~  154 (186)
T d1l3ia_         107 GGSGGELQEILRIIKDKLKPGGRIIVTAI--LLETKFEAMECLRDLGFDV  154 (186)
T ss_dssp             SCCTTCHHHHHHHHHHTEEEEEEEEEEEC--BHHHHHHHHHHHHHTTCCC
T ss_pred             eCccccchHHHHHHHHHhCcCCEEEEEee--ccccHHHHHHHHHHcCCCe
Confidence            95 45688999999999999999987542  3344455566677877743

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=8.4e-19  Score=151.67  Aligned_cols=128  Identities=14%  Similarity=0.150  Sum_probs=103.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.++.+|||||||+|..+..+++.++ ++|+|||+|+.+++.|+++++..|+. +|+++++|++++..    +++||+|+
T Consensus        31 l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~----~~~fD~v~  105 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA----NEKCDVAA  105 (245)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC----SSCEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccc----cCceeEEE
Confidence            34589999999999999999997764 79999999999999999999999986 49999999998743    47899999


Q ss_pred             EcC----cccHHHHHHHHccccccCeEEEEEEc---C-CcHH---------------HHHHHHHHHHHhCCeEeEEe
Q 022962          198 ARA----VAEMRILAEYCLPLVRVGGLFVAAKG---H-DPQE---------------EVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       198 sn~----~~~~~~ll~~~~~~LkpgG~l~~~~g---~-~~~~---------------ei~~~~~~l~~~g~~~~~~~  251 (289)
                      |..    +.++..+++++.++|||||++++...   . ....               ....+...+.+.||.++...
T Consensus       106 ~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v~~~  182 (245)
T d1nkva_         106 CVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMV  182 (245)
T ss_dssp             EESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred             EEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEEEEE
Confidence            874    45789999999999999999997531   0 1111               12345667788999876653

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.78  E-value=2.9e-18  Score=148.16  Aligned_cols=95  Identities=12%  Similarity=0.104  Sum_probs=83.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc--
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR--  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn--  199 (289)
                      +.+|||||||+|.+++.++..  +.+|+|||+|+.|++.|++++...++ +++++++|+.+++.    +++||+|+|.  
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~----~~~fD~i~~~~~  110 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI----NRKFDLITCCLD  110 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC----SCCEEEEEECTT
T ss_pred             CCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccccccCc-cceeeccchhhhcc----cccccccceeee
Confidence            579999999999999999976  56999999999999999999988887 69999999998864    3789999984  


Q ss_pred             C------cccHHHHHHHHccccccCeEEEE
Q 022962          200 A------VAEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       200 ~------~~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      .      ..++..+++.++++|||||.|++
T Consensus       111 ~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             GGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             eeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            2      23677899999999999999985

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.77  E-value=1.3e-17  Score=141.42  Aligned_cols=132  Identities=15%  Similarity=0.058  Sum_probs=101.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++++.+|||||||+|..+..+|...|+++|+|||+|+.|++.|+++++..+  |+.++.+|+.+..........+|+|++
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~~~~~~~vd~v~~  131 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKYSGIVEKVDLIYQ  131 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCccccccccceEEEEEe
Confidence            456899999999999999999998888999999999999999999988765  899999999876543322356788776


Q ss_pred             cC--cccHHHHHHHHccccccCeEEEEEE-----cC-Cc-HHHHHHHHHHHHHhCCeEeEEeee
Q 022962          199 RA--VAEMRILAEYCLPLVRVGGLFVAAK-----GH-DP-QEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       199 n~--~~~~~~ll~~~~~~LkpgG~l~~~~-----g~-~~-~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      .-  ..+...+++++.++|||||.+++..     +. .. ...+....+.+ ..||++.+...+
T Consensus       132 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l-~~gf~i~E~i~L  194 (209)
T d1nt2a_         132 DIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEM-EGDFKIVKHGSL  194 (209)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHH-HTTSEEEEEEEC
T ss_pred             cccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHH-HcCCEEEEEEcc
Confidence            52  3467789999999999999998753     11 12 22223333323 479999987755

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.76  E-value=1.9e-17  Score=142.34  Aligned_cols=131  Identities=18%  Similarity=0.146  Sum_probs=101.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE-
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV-  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~-  197 (289)
                      +++|.+|||||||+|..+..+|...|++.|+|||+|+.|++.+++.++..  .|+.++.+|........  +..+|+++ 
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~--~~~~~v~~i  147 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYA--NIVEKVDVI  147 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGT--TTCCCEEEE
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCcccc--cccceeEEe
Confidence            34689999999999999999999889999999999999999999987654  47888888887754322  23455544 


Q ss_pred             -Ec--CcccHHHHHHHHccccccCeEEEEEEc-------CCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          198 -AR--AVAEMRILAEYCLPLVRVGGLFVAAKG-------HDPQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       198 -sn--~~~~~~~ll~~~~~~LkpgG~l~~~~g-------~~~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                       +.  ...+...+++++.++|||||.+++..-       ........+..+.|+..||++++...+
T Consensus       148 ~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL  213 (230)
T d1g8sa_         148 YEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDI  213 (230)
T ss_dssp             EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             eccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecC
Confidence             33  234678889999999999999987631       123444566677888999999888755

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=2.8e-18  Score=145.15  Aligned_cols=100  Identities=15%  Similarity=0.174  Sum_probs=86.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|..+..+|+.  +.+|+|+|+|+.|++.|++++...+. ++.++++|+++++..   +++||+|+|..
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~~---~~~fD~I~~~~  110 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFE---DKTFDYVIFID  110 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCSC---TTCEEEEEEES
T ss_pred             CCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccc-ccccccccccccccc---CcCceEEEEec
Confidence            3679999999999999999964  67999999999999999999888775 578899999998754   37899999984


Q ss_pred             c------ccHHHHHHHHccccccCeEEEEEEc
Q 022962          201 V------AEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       201 ~------~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      +      .++..+++++.++|||||++++...
T Consensus       111 ~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         111 SIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            2      2577899999999999999987653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.6e-18  Score=146.45  Aligned_cols=128  Identities=16%  Similarity=0.136  Sum_probs=101.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|.++..++... ..+|+|||+|++|++.|++++...+..+++++++|++++...   +++||+|+++.
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~---~~~fD~I~~~~  135 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPE---PDSYDVIWIQW  135 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCC---SSCEEEEEEES
T ss_pred             CCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhccccccccccccccccccccccccccc---ccccccccccc
Confidence            46799999999999988876544 358999999999999999998888877899999999998653   37999999984


Q ss_pred             c------ccHHHHHHHHccccccCeEEEEEEcC--C----------cHHHHHHHHHHHHHhCCeEeEEee
Q 022962          201 V------AEMRILAEYCLPLVRVGGLFVAAKGH--D----------PQEEVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       201 ~------~~~~~ll~~~~~~LkpgG~l~~~~g~--~----------~~~ei~~~~~~l~~~g~~~~~~~~  252 (289)
                      +      .+...+++++.++|||||.+++....  +          .......+.+.++++||++++...
T Consensus       136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~  205 (222)
T d2ex4a1         136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER  205 (222)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence            2      23468999999999999999986321  0          001234456677799999887753

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.75  E-value=3.1e-18  Score=151.13  Aligned_cols=130  Identities=15%  Similarity=0.144  Sum_probs=105.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ++++.+|||||||+|.++..+|..+ +++|+|||+|+.+++.|+++++..|+. +++++++|+++++.+   +++||+|+
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~---~~sfD~V~  140 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE---DNSYDFIW  140 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC---TTCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccccccccc---ccccchhh
Confidence            3468999999999999999999764 679999999999999999999999985 699999999998754   37899999


Q ss_pred             EcC----cccHHHHHHHHccccccCeEEEEEEc---C--C--cHH------------HHHHHHHHHHHhCCeEeEEee
Q 022962          198 ARA----VAEMRILAEYCLPLVRVGGLFVAAKG---H--D--PQE------------EVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       198 sn~----~~~~~~ll~~~~~~LkpgG~l~~~~g---~--~--~~~------------ei~~~~~~l~~~g~~~~~~~~  252 (289)
                      |..    +.++..+++++.++|||||+|++...   .  .  ...            ......+.++++||..+....
T Consensus       141 ~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d  218 (282)
T d2o57a1         141 SQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS  218 (282)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             ccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEEE
Confidence            974    45789999999999999999987531   1  0  001            123345667889998776654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=3.5e-18  Score=147.47  Aligned_cols=97  Identities=18%  Similarity=0.326  Sum_probs=84.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|..++.+++.  +.+|+|||+|++|++.|++++...++ +++++++|+++++.+    ++||+|+|..
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~----~~fD~I~~~~  113 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK----NEFDAVTMFF  113 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC----SCEEEEEECS
T ss_pred             CCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccc-cchheehhhhhcccc----cccchHhhhh
Confidence            3679999999999999999975  56999999999999999999998877 699999999998653    6899999852


Q ss_pred             -------cccHHHHHHHHccccccCeEEEEE
Q 022962          201 -------VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       201 -------~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                             ..+...++++++++|||||++++.
T Consensus       114 ~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         114 STIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             SGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence                   235679999999999999999873

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.74  E-value=5.9e-17  Score=140.89  Aligned_cols=141  Identities=16%  Similarity=0.144  Sum_probs=107.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ....+|||||||+|.+++.+++.+|+.+++++|+ +.+++.+++++...++. +++++.+|+.+..     ..+||+|++
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~-----~~~~D~v~~  152 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL-----PRKADAIIL  152 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----SSCEEEEEE
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc-----ccchhheee
Confidence            3467999999999999999999999999999998 67899999999988874 6999999986532     257999998


Q ss_pred             cCc------ccHHHHHHHHccccccCeEEEEEEcCC------cHH-----------------HHHHHHHHHHHhCCeEeE
Q 022962          199 RAV------AEMRILAEYCLPLVRVGGLFVAAKGHD------PQE-----------------EVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       199 n~~------~~~~~ll~~~~~~LkpgG~l~~~~g~~------~~~-----------------ei~~~~~~l~~~g~~~~~  249 (289)
                      +.+      .+...++++++++|||||++++.....      ...                 ...++.+.++++||.+.+
T Consensus       153 ~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~  232 (253)
T d1tw3a2         153 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE  232 (253)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred             ccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEE
Confidence            743      234588999999999999998864211      000                 123455678899999999


Q ss_pred             EeeeecCCCCCceEEEE
Q 022962          250 LCSVESQSPFGQRTAVV  266 (289)
Q Consensus       250 ~~~~~~~~~~~~r~lv~  266 (289)
                      +..+..|...-...+++
T Consensus       233 v~~~~~p~~~~~~~li~  249 (253)
T d1tw3a2         233 VRQLPSPTIPYDLSLLV  249 (253)
T ss_dssp             EEEEECSSSSCEEEEEE
T ss_pred             EEECCCCCCCccEEEEE
Confidence            88775554333333443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=1.4e-17  Score=144.72  Aligned_cols=127  Identities=13%  Similarity=0.131  Sum_probs=104.4

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcC-CCCEEEEeccccccCCCCcCCCCceE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDV  195 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~-l~ni~~~~~d~~~~~~~~~~~~~fD~  195 (289)
                      ++++|.+|||+|||+|.+++.+|+. .|.++|+++|.++++++.|++|.++.+ ..|+++.++|+.+...    ++.||.
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~----~~~fD~  157 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS----DQMYDA  157 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC----SCCEEE
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc----cceeee
Confidence            4567999999999999999999976 578899999999999999999998864 5789999999987643    378999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      |+++.. +...+++.+.++|||||+++++.+.  .+.+.+..+.+++.||...+..
T Consensus       158 V~ld~p-~p~~~l~~~~~~LKpGG~lv~~~P~--i~Qv~~~~~~l~~~gf~~i~~~  210 (250)
T d1yb2a1         158 VIADIP-DPWNHVQKIASMMKPGSVATFYLPN--FDQSEKTVLSLSASGMHHLETV  210 (250)
T ss_dssp             EEECCS-CGGGSHHHHHHTEEEEEEEEEEESS--HHHHHHHHHHSGGGTEEEEEEE
T ss_pred             eeecCC-chHHHHHHHHHhcCCCceEEEEeCC--cChHHHHHHHHHHCCCceeEEE
Confidence            998754 4457889999999999999987643  3455666777888998765543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.1e-17  Score=142.68  Aligned_cols=159  Identities=18%  Similarity=0.186  Sum_probs=117.0

Q ss_pred             HHHHHhhhhhccccCCCCcccccc------c----cCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHH
Q 022962           90 NEVMERHIDDSLAIIPPIKNSYTS------H----CDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCV  159 (289)
Q Consensus        90 ~~~~~~~~~~sl~~~~~~~~~~~~------~----~~~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~  159 (289)
                      .+||+..+......+.|+++++..      .    ......+..++||||||+|++++.||...|+++|+|+|+|+++++
T Consensus        20 ~~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~   99 (250)
T d2h00a1          20 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFN   99 (250)
T ss_dssp             HHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHH
T ss_pred             HHHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHH
Confidence            356766777777788888776421      1    111123356999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCC-EEEEeccccccCCC---CcCCCCceEEEEcC-----------------------------------
Q 022962          160 FLEHAVSLTQLLN-VQIVRGRAETLGKD---VSFREQYDVAVARA-----------------------------------  200 (289)
Q Consensus       160 ~a~~~~~~~~l~n-i~~~~~d~~~~~~~---~~~~~~fD~V~sn~-----------------------------------  200 (289)
                      .|++|++.+++++ +.+++.+..+....   ....++||+|+||+                                   
T Consensus       100 ~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~  179 (250)
T d2h00a1         100 YAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMA  179 (250)
T ss_dssp             HHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHH
T ss_pred             HHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCcccccccc
Confidence            9999999999864 88888766543211   11246799999992                                   


Q ss_pred             ----cccHHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          201 ----VAEMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                          ...+..+++++...++..|++.++.|. .+.+++.   +.+++.|+.-+++.
T Consensus       180 ~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~---~~L~~~g~~~i~~i  232 (250)
T d2h00a1         180 EGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLK---EELRIQGVPKVTYT  232 (250)
T ss_dssp             HHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHH---HHHHHTTCSEEEEE
T ss_pred             ccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHH---HHHHHcCCCeEEEE
Confidence                012567888888999999999888874 4455554   45668998654443

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=5.1e-17  Score=135.80  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=86.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC--EEEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n--i~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++.+|||+|||+|.+++.+|..  ..+|+++|+|+.+++.++++++.+++++  ++++++|+.+...    +++||+|++
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~----~~~fD~Ii~  125 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK----DRKYNKIIT  125 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT----TSCEEEEEE
T ss_pred             CCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc----cCCceEEEE
Confidence            4789999999999999999876  4589999999999999999999998864  8999999876322    378999999


Q ss_pred             cCc-----ccHHHHHHHHccccccCeEEEEEEcCCc
Q 022962          199 RAV-----AEMRILAEYCLPLVRVGGLFVAAKGHDP  229 (289)
Q Consensus       199 n~~-----~~~~~ll~~~~~~LkpgG~l~~~~g~~~  229 (289)
                      |..     ...+.+++.+.++|||||.++++.....
T Consensus       126 ~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  161 (194)
T d1dusa_         126 NPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             CCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred             cccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCcC
Confidence            853     2357889999999999999988765443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.72  E-value=1.8e-17  Score=141.39  Aligned_cols=100  Identities=11%  Similarity=0.113  Sum_probs=86.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ++.+|||||||+|..++.+++.  .|+.+|+|||+|+.|++.|+++++..+.. ++++..+|+.+++.     +.+|+|+
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~d~i~  113 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASMVI  113 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC-----CSEEEEE
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc-----ccceeeE
Confidence            4789999999999999999976  37899999999999999999998877754 58888888887654     5789999


Q ss_pred             EcC------cccHHHHHHHHccccccCeEEEEEE
Q 022962          198 ARA------VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       198 sn~------~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      |+.      ..+...++++++++|||||.|++..
T Consensus       114 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         114 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            873      3477899999999999999999863

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.72  E-value=2.1e-17  Score=138.36  Aligned_cols=98  Identities=22%  Similarity=0.213  Sum_probs=86.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +++|||||||+|..++.+++.  +.+|+|+|+|+.+++.++++++..+++++++...|+.++..    +++||+|+|+.+
T Consensus        31 ~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~I~~~~~  104 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF----DGEYDFILSTVV  104 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC----CCCEEEEEEESC
T ss_pred             CCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc----cccccEEEEeee
Confidence            569999999999999999976  67999999999999999999999999999999999988754    378999999842


Q ss_pred             ------ccHHHHHHHHccccccCeEEEEEE
Q 022962          202 ------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       202 ------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                            .....+++.+.++|+|||++++..
T Consensus       105 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         105 MMFLEAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             GGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                  346789999999999999998764

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.71  E-value=2.1e-17  Score=145.99  Aligned_cols=101  Identities=23%  Similarity=0.337  Sum_probs=89.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.+++.++...| +.+|+|+|+|+.+++.|+++....+. +++++++|+++++.    +++||+|+|+
T Consensus        27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~----~~~fD~v~~~  101 (281)
T d2gh1a1          27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL----NDKYDIAICH  101 (281)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC----SSCEEEEEEE
T ss_pred             CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccccccc----cCCceEEEEe
Confidence            478999999999999999998776 47999999999999999999998877 79999999998754    3689999998


Q ss_pred             C----cccHHHHHHHHccccccCeEEEEEEc
Q 022962          200 A----VAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      .    +.++..+++++.++|||||.+++..+
T Consensus       102 ~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1         102 AFLLHMTTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             SCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            5    45788999999999999999987653

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=2.1e-16  Score=135.39  Aligned_cols=147  Identities=14%  Similarity=0.068  Sum_probs=107.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +++|.+|||+|||+|..+..+|... |.++|+|+|+|+.+++.++++++..+  |+..+..|+............+|+|+
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~~~~~~~~~~~vD~i~  148 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATKPEEYRALVPKVDVIF  148 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCCcccccccccceEEEE
Confidence            3469999999999999999999875 78999999999999999999877654  78888888866433222236799999


Q ss_pred             EcC--cccHHHHHHHHccccccCeEEEEEE-c-----CCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962          198 ARA--VAEMRILAEYCLPLVRVGGLFVAAK-G-----HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  269 (289)
Q Consensus       198 sn~--~~~~~~ll~~~~~~LkpgG~l~~~~-g-----~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k  269 (289)
                      +.-  ......+++.+.++|||||.+++.. .     ....+++....+.+...||++++...+. |. ..++.+++++|
T Consensus       149 ~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~i~L~-p~-~~~H~~vv~rK  226 (227)
T d1g8aa_         149 EDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERLNLE-PY-EKDHALFVVRK  226 (227)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEEEECT-TT-SSSEEEEEEEC
T ss_pred             EEccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEEEcCC-CC-CCceEEEEEEe
Confidence            873  3456789999999999999998753 1     1122333333344556799998876552 21 23455666665

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.70  E-value=1.6e-16  Score=134.11  Aligned_cols=124  Identities=18%  Similarity=0.080  Sum_probs=100.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +..|||||||+|..++.+|+.+|+..++|||+++.++..|.+++++.+++||.++++|+.++... ..++++|.|+++..
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~-~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDV-FEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHH-CCTTSCCEEEEESC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcc-cCchhhhccccccc
Confidence            34799999999999999999999999999999999999999999999999999999999876421 12478999998742


Q ss_pred             cc------------HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEe
Q 022962          202 AE------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL  248 (289)
Q Consensus       202 ~~------------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~  248 (289)
                      .+            .+.+++.+.++|||||.|++...  ...-...+.+.+...++...
T Consensus       109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD--~~~y~~~~~~~~~~~~~~~~  165 (204)
T d2fcaa1         109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD--NRGLFEYSLKSFSEYGLLLT  165 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES--CHHHHHHHHHHHHHHTCEEE
T ss_pred             cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEEC--ChHHHHHHHHHHHHCCCccc
Confidence            21            15899999999999999988653  33333445556667776544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=9.2e-17  Score=141.92  Aligned_cols=98  Identities=16%  Similarity=0.166  Sum_probs=84.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++|.+|||||||.|.+++.+++.+ +++|+|||+|+++++.|++.+++.++. ++.+...|..++      +++||.|+|
T Consensus        51 ~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~------~~~fD~i~s  123 (280)
T d2fk8a1          51 KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF------AEPVDRIVS  123 (280)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC------CCCCSEEEE
T ss_pred             CCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh------ccchhhhhH
Confidence            458999999999999999988776 569999999999999999999999985 477877777654      368999999


Q ss_pred             cCc------ccHHHHHHHHccccccCeEEEEE
Q 022962          199 RAV------AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       199 n~~------~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..+      .+++.+++++.++|||||++++.
T Consensus       124 i~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         124 IEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             ESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence            742      46789999999999999999874

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=1.7e-16  Score=139.17  Aligned_cols=126  Identities=18%  Similarity=0.182  Sum_probs=104.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      +.++.+|||+|||+|.+++.+|+.. |.++|+++|+++++++.|+++++..++ +++.+...|+.....    ...||.|
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~----~~~~D~V  176 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD----EKDVDAL  176 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS----CCSEEEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc----ccceeee
Confidence            4569999999999999999999875 789999999999999999999999997 469998888765322    3679999


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      +.. +.++..+++.+.++|||||++++...  ..+.+.+..+.+++.||...++.
T Consensus       177 ~~d-~p~p~~~l~~~~~~LKpGG~lv~~~P--~~~Qv~~~~~~l~~~gF~~i~~~  228 (266)
T d1o54a_         177 FLD-VPDPWNYIDKCWEALKGGGRFATVCP--TTNQVQETLKKLQELPFIRIEVW  228 (266)
T ss_dssp             EEC-CSCGGGTHHHHHHHEEEEEEEEEEES--SHHHHHHHHHHHHHSSEEEEEEE
T ss_pred             Eec-CCCHHHHHHHHHhhcCCCCEEEEEeC--cccHHHHHHHHHHHCCceeEEEE
Confidence            875 45667889999999999999998764  34555667778889999766554

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=1.4e-16  Score=139.16  Aligned_cols=126  Identities=16%  Similarity=0.087  Sum_probs=100.7

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcC---CCCEEEEeccccccCCCCcCCCCc
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQ---LLNVQIVRGRAETLGKDVSFREQY  193 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~---l~ni~~~~~d~~~~~~~~~~~~~f  193 (289)
                      ++.+|.+|||+|||+|.+++.||+. .|.++|+++|+++++++.|++|++..+   .+|++++++|+.+...+   +++|
T Consensus        93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~---~~~f  169 (264)
T d1i9ga_          93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP---DGSV  169 (264)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC---TTCE
T ss_pred             CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc---CCCc
Confidence            3456999999999999999999987 588999999999999999999988752   46899999999886543   3789


Q ss_pred             eEEEEcCcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHH-HhCCeEeE
Q 022962          194 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQ-LMGASLLQ  249 (289)
Q Consensus       194 D~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~-~~g~~~~~  249 (289)
                      |.|+.+. .++...++.+.++|||||++++..+.  .+.+..+.+.++ ..||..++
T Consensus       170 DaV~ldl-p~P~~~l~~~~~~LkpGG~lv~~~P~--i~Qv~~~~~~l~~~~~f~~i~  223 (264)
T d1i9ga_         170 DRAVLDM-LAPWEVLDAVSRLLVAGGVLMVYVAT--VTQLSRIVEALRAKQCWTEPR  223 (264)
T ss_dssp             EEEEEES-SCGGGGHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHHSSBCCCE
T ss_pred             ceEEEec-CCHHHHHHHHHhccCCCCEEEEEeCc--cChHHHHHHHHHHcCCeecce
Confidence            9999864 55568889999999999999987753  334455555665 44675433

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.68  E-value=1.8e-16  Score=135.19  Aligned_cols=121  Identities=14%  Similarity=0.096  Sum_probs=95.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||||||+|..+..++..  +.+|+|||+|+++++.|+.+..    +++.+++++++++..    +++||+|+|.. 
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~----~~~fD~I~~~~v   90 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQL----PRRYDNIVLTHV   90 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCC----SSCEEEEEEESC
T ss_pred             CCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc----ccccccccccccccc----ccccccccccce
Confidence            668999999999999988865  4689999999999999986532    379999999998754    37899999985 


Q ss_pred             ---cccHHHHHHHHc-cccccCeEEEEEEcCCc--------------------HH----------HHHHHHHHHHHhCCe
Q 022962          201 ---VAEMRILAEYCL-PLVRVGGLFVAAKGHDP--------------------QE----------EVKNSERAVQLMGAS  246 (289)
Q Consensus       201 ---~~~~~~ll~~~~-~~LkpgG~l~~~~g~~~--------------------~~----------ei~~~~~~l~~~g~~  246 (289)
                         +.+...+++++. ++|+|||.+++......                    ..          ....+.+.+.++||+
T Consensus        91 leh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~  170 (225)
T d2p7ia1          91 LEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQ  170 (225)
T ss_dssp             GGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred             eEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCE
Confidence               457788999987 89999999998653110                    00          023456678899999


Q ss_pred             EeEEee
Q 022962          247 LLQLCS  252 (289)
Q Consensus       247 ~~~~~~  252 (289)
                      +++...
T Consensus       171 i~~~~~  176 (225)
T d2p7ia1         171 VTYRSG  176 (225)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            887654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=2.2e-16  Score=140.06  Aligned_cols=99  Identities=13%  Similarity=0.061  Sum_probs=84.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +++|.+|||||||.|.+++.+|..++ ++|+||++|++.++.+++.++..++.+ +++...|....      +++||.|+
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~------~~~fD~i~  131 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF------DEPVDRIV  131 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC------CCCCSEEE
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc------ccccceEe
Confidence            44699999999999999999998775 699999999999999999999999864 88877776432      37899999


Q ss_pred             EcCc-------------ccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAV-------------AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~-------------~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |..+             .+++.+++.+.++|||||++++.
T Consensus       132 sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~  171 (291)
T d1kpia_         132 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH  171 (291)
T ss_dssp             EESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             echhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence            9742             24789999999999999999864

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.67  E-value=1.4e-16  Score=138.22  Aligned_cols=102  Identities=15%  Similarity=0.072  Sum_probs=84.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|..+..++.. +..+|+|||+|+.|++.|++.++..+.. ++.++++|+......  ..++||+|+|+
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~--~~~~fD~V~~~  100 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD--LGKEFDVISSQ  100 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC--CSSCEEEEEEE
T ss_pred             CcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc--ccccceEEEEc
Confidence            4789999999999998888876 3468999999999999999998887764 699999999765432  24789999997


Q ss_pred             Cc--------ccHHHHHHHHccccccCeEEEEEE
Q 022962          200 AV--------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       200 ~~--------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..        .++..+++.+.++|||||+|++..
T Consensus       101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_         101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  134 (252)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence            42        245789999999999999998754

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.67  E-value=1.1e-15  Score=128.86  Aligned_cols=126  Identities=13%  Similarity=0.053  Sum_probs=101.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      ...|||||||+|...+.+|+.+|+..++|||+++.++..|.+.+.+.+++|++++++|+.++... ..+.++|.|+++-.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~-~~~~~~~~i~i~fP  110 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY-FEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT-SCTTCCSEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhh-ccCCceehhccccc
Confidence            34799999999999999999999999999999999999999999999999999999999887532 12478999998743


Q ss_pred             cc------------HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          202 AE------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       202 ~~------------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                      .+            -+.+++.+.++|||||.|++...  ...-...+...+...++.....
T Consensus       111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD--~~~Y~~~~le~~~~~~~~~~~~  169 (204)
T d1yzha1         111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD--NRGLFEYSLVSFSQYGMKLNGV  169 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES--CHHHHHHHHHHHHHHTCEEEEE
T ss_pred             ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC--CccHHHHHHHHHHHCCcccccc
Confidence            22            26899999999999999988653  3333344455566777765443

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=9.9e-17  Score=137.19  Aligned_cols=94  Identities=18%  Similarity=0.250  Sum_probs=78.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn-  199 (289)
                      ++.+|||+|||+|..+..++..  +.+|+|||+|+.|++.|+++    +..  .++++|+++++.+   +++||+|+|. 
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~----~~~--~~~~~~~~~l~~~---~~~fD~ii~~~  110 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREK----GVK--NVVEAKAEDLPFP---SGAFEAVLALG  110 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHH----TCS--CEEECCTTSCCSC---TTCEEEEEECS
T ss_pred             CCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccc----ccc--ccccccccccccc---cccccceeeec
Confidence            3679999999999999999865  67999999999999999874    322  2567899988654   4799999985 


Q ss_pred             C----cccHHHHHHHHccccccCeEEEEEE
Q 022962          200 A----VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      .    +.+...+++++.++|||||.+++..
T Consensus       111 ~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         111 DVLSYVENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             SHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence            3    4578899999999999999998865

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.66  E-value=4.5e-17  Score=134.51  Aligned_cols=101  Identities=10%  Similarity=-0.108  Sum_probs=82.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC------------CCEEEEeccccccCCCCc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL------------LNVQIVRGRAETLGKDVS  188 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l------------~ni~~~~~d~~~~~~~~~  188 (289)
                      ++.+|||+|||+|..++.||..  +.+|+|+|+|+.|++.|++.++..+.            .+++++++|+.++.... 
T Consensus        20 ~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-   96 (201)
T d1pjza_          20 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD-   96 (201)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH-
T ss_pred             CCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc-
Confidence            4889999999999999999987  78999999999999999998865432            24578888888765421 


Q ss_pred             CCCCceEEEEcCc------ccHHHHHHHHccccccCeEEEEEE
Q 022962          189 FREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       189 ~~~~fD~V~sn~~------~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                       ...||+|+++.+      .+...+++.+.++|||||.+++..
T Consensus        97 -~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          97 -IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             -HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             -ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence             357999998742      356889999999999999987654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=1.4e-16  Score=135.22  Aligned_cols=103  Identities=19%  Similarity=0.269  Sum_probs=85.5

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      .++++.+|||||||+|..+..+|+.. +.++|+++|+++++++.|+++.+..+++|+.++++|+.+....   .++||+|
T Consensus        72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~---~~~fD~I  148 (213)
T d1dl5a1          72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE---FSPYDVI  148 (213)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---GCCEEEE
T ss_pred             hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc---ccchhhh
Confidence            35579999999999999999999865 6789999999999999999999999999999999998875443   3689999


Q ss_pred             EEcCcc-cHHHHHHHHccccccCeEEEEEEc
Q 022962          197 VARAVA-EMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       197 ~sn~~~-~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      ++++.. ..   .+.+.+.|||||++++..+
T Consensus       149 ~~~~~~~~~---p~~l~~~LkpGG~lv~pv~  176 (213)
T d1dl5a1         149 FVTVGVDEV---PETWFTQLKEGGRVIVPIN  176 (213)
T ss_dssp             EECSBBSCC---CHHHHHHEEEEEEEEEEBC
T ss_pred             hhhccHHHh---HHHHHHhcCCCcEEEEEEC
Confidence            998632 22   2334567999999998654

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=3.1e-16  Score=131.57  Aligned_cols=115  Identities=16%  Similarity=0.217  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +.+|||||||+|.++..++      +++|||+|+.+++.++++       +++++++|+++++..   +++||+|+|+. 
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~---~~~fD~I~~~~~  100 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLK---DESFDFALMVTT  100 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSC---TTCEEEEEEESC
T ss_pred             CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-------ccccccccccccccc---cccccccccccc
Confidence            5689999999999876653      568999999999998873       689999999998754   47899999984 


Q ss_pred             ---cccHHHHHHHHccccccCeEEEEEEcCCc--HH-------------------HHHHHHHHHHHhCCeEeEEee
Q 022962          201 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDP--QE-------------------EVKNSERAVQLMGASLLQLCS  252 (289)
Q Consensus       201 ---~~~~~~ll~~~~~~LkpgG~l~~~~g~~~--~~-------------------ei~~~~~~l~~~g~~~~~~~~  252 (289)
                         +.++..+++++.++|+|||.+++......  ..                   ...++.+.++++||+.+++..
T Consensus       101 l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~  176 (208)
T d1vlma_         101 ICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ  176 (208)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             cccccccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence               45789999999999999999998652211  00                   123456678899998887664

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=5.4e-16  Score=137.16  Aligned_cols=98  Identities=17%  Similarity=0.210  Sum_probs=86.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +++|.+|||||||.|.+++.+|..+ +++|+||++|++.++.|++.+++.|+. ++++..+|..+++      ++||.|+
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~------~~fD~i~  132 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD------EPVDRIV  132 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC------CCCSEEE
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc------cccccee
Confidence            3469999999999999999999887 589999999999999999999888875 6999999987663      6799999


Q ss_pred             EcC----c--ccHHHHHHHHccccccCeEEEE
Q 022962          198 ARA----V--AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       198 sn~----~--~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      |-.    +  .++..+++++.++|||||++++
T Consensus       133 si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l  164 (285)
T d1kpga_         133 SIGAFEHFGHERYDAFFSLAHRLLPADGVMLL  164 (285)
T ss_dssp             EESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred             eehhhhhcCchhHHHHHHHHHhhcCCCCcEEE
Confidence            973    2  4578999999999999999986

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.7e-16  Score=138.01  Aligned_cols=129  Identities=14%  Similarity=0.106  Sum_probs=97.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcC-----------CCCEEEEeccccccCCC
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQ-----------LLNVQIVRGRAETLGKD  186 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~-----------l~ni~~~~~d~~~~~~~  186 (289)
                      +.+|.+|||+|||+|.+++.||+. .|+++|+++|+++++++.|++|.+..+           .+|+.+.++|+.+....
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~  175 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  175 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence            446999999999999999999987 478999999999999999999988642           35899999999876432


Q ss_pred             CcCCCCceEEEEcCcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          187 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       187 ~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                       ..+..||.|+..- .++...+..+.++|||||+|+++.+.  .+.+....+.++..++....+.
T Consensus       176 -~~~~~fD~V~LD~-p~P~~~l~~~~~~LKpGG~lv~~~P~--i~Qv~~~~~~l~~~~~~f~~i~  236 (324)
T d2b25a1         176 -IKSLTFDAVALDM-LNPHVTLPVFYPHLKHGGVCAVYVVN--ITQVIELLDGIRTCELALSCEK  236 (324)
T ss_dssp             ------EEEEEECS-SSTTTTHHHHGGGEEEEEEEEEEESS--HHHHHHHHHHHHHHTCCEEEEE
T ss_pred             -cCCCCcceEeecC-cCHHHHHHHHHHhccCCCEEEEEeCC--HHHHHHHHHHHHHcCCCceeeE
Confidence             1236799999853 34456899999999999999987643  3455666677776654334443

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.65  E-value=4.7e-16  Score=135.36  Aligned_cols=125  Identities=14%  Similarity=0.134  Sum_probs=95.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||+|||+|.++..++.... .+|++||+|+.|++.|+++...  ..+++++++|+++++..   +++||+|+|..
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~--~~~~~~~~~d~~~~~~~---~~~fD~I~~~~  166 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAG--MPVGKFILASMETATLP---PNTYDLIVIQW  166 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTT--SSEEEEEESCGGGCCCC---SSCEEEEEEES
T ss_pred             CCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccc--cccceeEEccccccccC---CCccceEEeec
Confidence            367999999999999988776543 4899999999999999986543  34689999999998654   37899999985


Q ss_pred             c------ccHHHHHHHHccccccCeEEEEEEcCCc-------------HHHHHHHHHHHHHhCCeEeEEe
Q 022962          201 V------AEMRILAEYCLPLVRVGGLFVAAKGHDP-------------QEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 ~------~~~~~ll~~~~~~LkpgG~l~~~~g~~~-------------~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      +      .+...+++++.++|+|||.+++......             ......+.+.++++||++++..
T Consensus       167 vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~  236 (254)
T d1xtpa_         167 TAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA  236 (254)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred             cccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence            2      2356889999999999999997542100             0012345667789999987765

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=3.6e-15  Score=130.17  Aligned_cols=125  Identities=16%  Similarity=0.174  Sum_probs=98.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      .+++.+|||+|||+|.+++.+|+. +.++|+|+|+|+.+++.+++|++.+++++ |+++++|+.++...    +.||.|+
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~----~~~D~Ii  179 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE----NIADRIL  179 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC----SCEEEEE
T ss_pred             cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC----CCCCEEE
Confidence            356899999999999999999976 46799999999999999999999999976 99999999887542    6899999


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEEE---cC-CcHHHHHHHHHHHHHhCCeEe
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAAK---GH-DPQEEVKNSERAVQLMGASLL  248 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~---g~-~~~~ei~~~~~~l~~~g~~~~  248 (289)
                      ++....-..+++.+.++|++||++.+..   .. ...+..+.+.+..+..|+++.
T Consensus       180 ~~~p~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~  234 (260)
T d2frna1         180 MGYVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE  234 (260)
T ss_dssp             ECCCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred             ECCCCchHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceE
Confidence            9976656678888889999999986532   11 111112333445567888764

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=9e-16  Score=134.50  Aligned_cols=102  Identities=18%  Similarity=0.146  Sum_probs=83.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ++.+|||||||+|..+..++...|+.+++|||+|+.|++.|++.     ..+++++++|+.+++..   +++||+|++..
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l~~~---~~sfD~v~~~~  155 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLPFS---DTSMDAIIRIY  155 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCSBC---TTCEEEEEEES
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc-----cccccceeeehhhccCC---CCCEEEEeecC
Confidence            37799999999999999999988999999999999999988763     34799999999998764   47899999875


Q ss_pred             cccHHHHHHHHccccccCeEEEEEEc-CCcHHHH
Q 022962          201 VAEMRILAEYCLPLVRVGGLFVAAKG-HDPQEEV  233 (289)
Q Consensus       201 ~~~~~~ll~~~~~~LkpgG~l~~~~g-~~~~~ei  233 (289)
                      ...   .++++.++|||||++++... ++...++
T Consensus       156 ~~~---~~~e~~rvLkpgG~l~~~~p~~~~l~el  186 (268)
T d1p91a_         156 APC---KAEELARVVKPGGWVITATPGPRHLMEL  186 (268)
T ss_dssp             CCC---CHHHHHHHEEEEEEEEEEEECTTTTHHH
T ss_pred             CHH---HHHHHHHHhCCCcEEEEEeeCCcchHHH
Confidence            332   25678899999999998763 3444443

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.61  E-value=1.4e-14  Score=125.92  Aligned_cols=128  Identities=17%  Similarity=0.160  Sum_probs=100.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ....+|||||||+|.++..+++++|+.+++++|+ +++++.++++++..++. +++++.+|..+. .    +..||+|++
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-~----p~~~D~v~~  153 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-L----PVTADVVLL  153 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C----SCCEEEEEE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc-c----cccchhhhc
Confidence            3467999999999999999999999999999997 78899999999988875 599999988652 1    256999998


Q ss_pred             cCc------ccHHHHHHHHccccccCeEEEEEEcC----CcH----H----------------HHHHHHHHHHHhCCeEe
Q 022962          199 RAV------AEMRILAEYCLPLVRVGGLFVAAKGH----DPQ----E----------------EVKNSERAVQLMGASLL  248 (289)
Q Consensus       199 n~~------~~~~~ll~~~~~~LkpgG~l~~~~g~----~~~----~----------------ei~~~~~~l~~~g~~~~  248 (289)
                      ..+      .+...+++++++.|||||++++....    +..    .                ...++.+.++++||+++
T Consensus       154 ~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~  233 (256)
T d1qzza2         154 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALA  233 (256)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEE
T ss_pred             cccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCcee
Confidence            743      23468899999999999999976421    110    0                12345667788999998


Q ss_pred             EEeee
Q 022962          249 QLCSV  253 (289)
Q Consensus       249 ~~~~~  253 (289)
                      ++...
T Consensus       234 ~~~~~  238 (256)
T d1qzza2         234 SERTS  238 (256)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88765

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.8e-15  Score=128.07  Aligned_cols=101  Identities=13%  Similarity=0.018  Sum_probs=82.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-----------------CCCEEEEecccccc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----------------LLNVQIVRGRAETL  183 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-----------------l~ni~~~~~d~~~~  183 (289)
                      ++.+|||+|||+|..++.||..  +.+|+|||+|+.+++.|++......                 ..+++++++|+.++
T Consensus        45 ~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l  122 (229)
T d2bzga1          45 SGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL  122 (229)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred             CCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence            4789999999999999999975  7899999999999999888654321                 13689999999887


Q ss_pred             CCCCcCCCCceEEEEcC------cccHHHHHHHHccccccCeEEEEEE
Q 022962          184 GKDVSFREQYDVAVARA------VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       184 ~~~~~~~~~fD~V~sn~------~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ...  ..+.||+|+...      ....+.+++.+.++|||||++++..
T Consensus       123 ~~~--~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         123 PRT--NIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             GGS--CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccc--ccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence            643  247899999874      2467899999999999999987653

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.2e-16  Score=132.91  Aligned_cols=128  Identities=12%  Similarity=0.079  Sum_probs=93.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +|.+|||||||+|..+..++... ..+|+|||+|+.+++.|+++++..+. ++.++.+++.+.... ..+++||.|+...
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~fD~i~fD~  129 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPT-LPDGHFDGILYDT  129 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGG-SCTTCEEEEEECC
T ss_pred             CCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhccc-ccccccccccccccc-cccccccceeecc
Confidence            47899999999999999998654 46899999999999999998877654 588888887765332 1247899998652


Q ss_pred             ---------cccHHHHHHHHccccccCeEEEEEEc----------CCcHH-HH-HHHHHHHHHhCCeEeEEe
Q 022962          201 ---------VAEMRILAEYCLPLVRVGGLFVAAKG----------HDPQE-EV-KNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 ---------~~~~~~ll~~~~~~LkpgG~l~~~~g----------~~~~~-ei-~~~~~~l~~~g~~~~~~~  251 (289)
                               ..+...+++++.++|||||+|++...          ..... .. ......+.+.||+..++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~~~i~  201 (229)
T d1zx0a1         130 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIR  201 (229)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGGEE
T ss_pred             cccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCeeEEEE
Confidence                     23567899999999999999986321          01111 11 234455678899766554

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.3e-15  Score=127.55  Aligned_cols=132  Identities=17%  Similarity=0.115  Sum_probs=89.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC----------------------------
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN----------------------------  172 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n----------------------------  172 (289)
                      ++.+|||||||+|..++.++... ..+|+|+|+|+.+++.|+++++..+...                            
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            47899999999999887776542 3589999999999999999987655321                            


Q ss_pred             -E-EEEeccccc-cCCCCcCCCCceEEEEcCc--------ccHHHHHHHHccccccCeEEEEEEcCC-------------
Q 022962          173 -V-QIVRGRAET-LGKDVSFREQYDVAVARAV--------AEMRILAEYCLPLVRVGGLFVAAKGHD-------------  228 (289)
Q Consensus       173 -i-~~~~~d~~~-~~~~~~~~~~fD~V~sn~~--------~~~~~ll~~~~~~LkpgG~l~~~~g~~-------------  228 (289)
                       + .....++.. ........++||+|++..+        .++..+++.+.++|||||.+++..-..             
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~  209 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC  209 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence             0 111111111 1111112478999998732        367789999999999999998753110             


Q ss_pred             cHHHHHHHHHHHHHhCCeEeEEeee
Q 022962          229 PQEEVKNSERAVQLMGASLLQLCSV  253 (289)
Q Consensus       229 ~~~ei~~~~~~l~~~g~~~~~~~~~  253 (289)
                      ..-...++.+.++.+||.++++...
T Consensus       210 ~~~~~~~~~~~l~~aGf~v~~~~~~  234 (257)
T d2a14a1         210 VALEKGEVEQAVLDAGFDIEQLLHS  234 (257)
T ss_dssp             CCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cCCCHHHHHHHHHHCCCEEEEEEEe
Confidence            0011234455677999998887544

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=4.4e-15  Score=133.28  Aligned_cols=125  Identities=21%  Similarity=0.160  Sum_probs=96.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-CcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|..++.+|..  +.+|+++|+|+.+++.|++|++.+|+++++++++|+.++... ....++||+|+++
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            4789999999999999988854  679999999999999999999999999999999999774221 0124689999998


Q ss_pred             C-------------cccHHHHHHHHccccccCeEEEEEEcC--CcHHHHHHH-HHHHHHhCCeE
Q 022962          200 A-------------VAEMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNS-ERAVQLMGASL  247 (289)
Q Consensus       200 ~-------------~~~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~-~~~l~~~g~~~  247 (289)
                      +             ...+..++..+.++|+|||.+++....  ...+++.++ .+.....|-.+
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~  286 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL  286 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCE
Confidence            4             224678999999999999999886543  234444433 34455556443

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.1e-15  Score=127.83  Aligned_cols=105  Identities=20%  Similarity=0.218  Sum_probs=84.4

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCC-----CCEEEEeccccccCCCCcCCC
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQL-----LNVQIVRGRAETLGKDVSFRE  191 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l-----~ni~~~~~d~~~~~~~~~~~~  191 (289)
                      .++++.+|||||||+|+.+..+|+. .+.++|+++|+++++++.|++++++.++     .++.++++|.......   .+
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~---~~  149 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE---EA  149 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG---GC
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch---hh
Confidence            4567899999999999999999876 4678999999999999999999987654     5789999998876543   36


Q ss_pred             CceEEEEcCcccHHHHHHHHccccccCeEEEEEEcC
Q 022962          192 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       192 ~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      +||.|++++...  .+.+.+.+.|||||++++..+.
T Consensus       150 ~fD~I~~~~~~~--~ip~~l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         150 PYDAIHVGAAAP--VVPQALIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             CEEEEEECSBBS--SCCHHHHHTEEEEEEEEEEESC
T ss_pred             hhhhhhhhcchh--hcCHHHHhhcCCCcEEEEEEcc
Confidence            899999986432  1223456789999999987654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=4.5e-15  Score=131.23  Aligned_cols=102  Identities=23%  Similarity=0.303  Sum_probs=79.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC----CEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL----NVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~----ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +.+|||+|||+|..++.||..  +.+|+|+|+|++|++.|++++...+..    +..+...++..+.......++||+|+
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~  134 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  134 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEE
Confidence            679999999999999999976  679999999999999999988877653    23445555544322112247899999


Q ss_pred             EcC------------cccHHHHHHHHccccccCeEEEEEE
Q 022962          198 ARA------------VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       198 sn~------------~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      |..            ..+...+++++.++|||||.|++..
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         135 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             ECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            742            1246789999999999999999854

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.4e-14  Score=126.70  Aligned_cols=97  Identities=19%  Similarity=0.230  Sum_probs=78.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.+++.+|+. ...+|+|+|.|+.+.. +++.++.++. ++++++++|++++..+   .++||+|+|.
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~---~~~~D~Ivse  109 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLP---VEKVDVIISE  109 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCS---CSCEEEEEEC
T ss_pred             CcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCc---cccceEEEEe
Confidence            3789999999999999998876 3469999999998865 4555555554 5799999999998654   3789999997


Q ss_pred             Cc-------ccHHHHHHHHccccccCeEEE
Q 022962          200 AV-------AEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       200 ~~-------~~~~~ll~~~~~~LkpgG~l~  222 (289)
                      .+       ..++.++....++|||||.++
T Consensus       110 ~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         110 WMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            32       246788888889999999997

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=2.4e-14  Score=128.72  Aligned_cols=96  Identities=18%  Similarity=0.232  Sum_probs=81.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||||||+|.+++.+|+. ...+|+|+|.|+ ++..|+++++.++.. ++++++++++++..+   +++||+|++..
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~---~~~~D~i~se~  113 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLP---FPKVDIIISEW  113 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS---SSCEEEEEECC
T ss_pred             cCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCc---ccceeEEEEEe
Confidence            789999999999999988865 456999999996 678899988888875 599999999998654   37899999973


Q ss_pred             c-------ccHHHHHHHHccccccCeEEE
Q 022962          201 V-------AEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       201 ~-------~~~~~ll~~~~~~LkpgG~l~  222 (289)
                      +       ..+..++....++|||||.++
T Consensus       114 ~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         114 MGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             cceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            2       357888999999999999997

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2.3e-14  Score=128.26  Aligned_cols=97  Identities=21%  Similarity=0.270  Sum_probs=81.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||||||+|.+++.+|+. ...+|+|+|.|+. +..++++++.+++. +|+++++|++++..+   .++||+|++.
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~---~~~~D~ivs~  107 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELP---VEKVDIIISE  107 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCS---SSCEEEEEEC
T ss_pred             CcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccc---cceeEEEeee
Confidence            3789999999999999998875 4568999999975 46777888888875 599999999998654   3789999997


Q ss_pred             Cc-------ccHHHHHHHHccccccCeEEE
Q 022962          200 AV-------AEMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       200 ~~-------~~~~~ll~~~~~~LkpgG~l~  222 (289)
                      .+       ..++.++..+.++|||||.++
T Consensus       108 ~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         108 WMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            32       257899999999999999998

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.53  E-value=2.2e-14  Score=115.15  Aligned_cols=103  Identities=14%  Similarity=0.123  Sum_probs=83.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|||+|||||.+|+..+.. ...+|++||.++++++.+++|++.+++.+ ++++++|+..+...  ..++||+|++++
T Consensus        15 g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~--~~~~fDiIf~DP   91 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC--LTGRFDLVFLDP   91 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH--BCSCEEEEEECC
T ss_pred             CCeEEEcCCccCHHHHHHHHh-Ccceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc--cccccceeEech
Confidence            889999999999999987754 45699999999999999999999999865 99999999875321  247899999985


Q ss_pred             c---ccHHHHHHHH--ccccccCeEEEEEEcC
Q 022962          201 V---AEMRILAEYC--LPLVRVGGLFVAAKGH  227 (289)
Q Consensus       201 ~---~~~~~ll~~~--~~~LkpgG~l~~~~g~  227 (289)
                      .   ......++.+  .++|+|||.++++...
T Consensus        92 Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          92 PYAKETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hhccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            2   2334455543  4689999999998753

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.52  E-value=1.9e-14  Score=122.68  Aligned_cols=101  Identities=20%  Similarity=0.263  Sum_probs=80.2

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +++++.+|||||||+|+.+..||..  ..+|+++|+++.+++.|+++...  ..|+.++++|.......   .++||.|+
T Consensus        67 ~l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d~~~g~~~---~~pfD~Ii  139 (224)
T d1vbfa_          67 DLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSY--YNNIKLILGDGTLGYEE---EKPYDRVV  139 (224)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT--CSSEEEEESCGGGCCGG---GCCEEEEE
T ss_pred             hhcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhc--ccccccccCchhhcchh---hhhHHHHH
Confidence            3557999999999999999999987  57999999999999999987664  45899999998764332   36899999


Q ss_pred             EcCc-ccHHHHHHHHccccccCeEEEEEEcCC
Q 022962          198 ARAV-AEMRILAEYCLPLVRVGGLFVAAKGHD  228 (289)
Q Consensus       198 sn~~-~~~~~ll~~~~~~LkpgG~l~~~~g~~  228 (289)
                      +.+. ..+   .+.+.+.|||||++++..|..
T Consensus       140 v~~a~~~i---p~~l~~qLk~GGrLV~pvg~~  168 (224)
T d1vbfa_         140 VWATAPTL---LCKPYEQLKEGGIMILPIGVG  168 (224)
T ss_dssp             ESSBBSSC---CHHHHHTEEEEEEEEEEECSS
T ss_pred             hhcchhhh---hHHHHHhcCCCCEEEEEEcCC
Confidence            8853 322   233456799999999877643

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.52  E-value=3.8e-14  Score=127.36  Aligned_cols=127  Identities=18%  Similarity=0.105  Sum_probs=97.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCC-CcCCCCceEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD-VSFREQYDVA  196 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~-~~~~~~fD~V  196 (289)
                      ..++.+|||+|||+|.+++.+|.. ...+|+++|+|+.+++.+++|++.+|+. +++++++|+.+.... ....++||+|
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V  221 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  221 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence            456899999999999999998865 4569999999999999999999999995 699999998764211 0123689999


Q ss_pred             EEcCc-------------ccHHHHHHHHccccccCeEEEEEEcC--CcHHHHHHH-HHHHHHhCCe
Q 022962          197 VARAV-------------AEMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNS-ERAVQLMGAS  246 (289)
Q Consensus       197 ~sn~~-------------~~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~-~~~l~~~g~~  246 (289)
                      ++++.             ..+..++..+.++|+|||+|++....  ...+++.++ .++..+.|-.
T Consensus       222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr~  287 (324)
T d2as0a2         222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKF  287 (324)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEE
T ss_pred             hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcCCe
Confidence            99842             24678999999999999999986532  234454433 3445555643

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.52  E-value=2.2e-14  Score=121.59  Aligned_cols=102  Identities=19%  Similarity=0.345  Sum_probs=84.9

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      .++++.+|||||||||+.+..+|... +.+|++||.++..++.|++++++.+..|+.++++|..+....   ..+||.|+
T Consensus        75 ~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~---~~pfD~Ii  150 (215)
T d1jg1a_          75 NLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP---KAPYDVII  150 (215)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---GCCEEEEE
T ss_pred             ccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcc---cCcceeEE
Confidence            45679999999999999999999764 468999999999999999999999999999999999875432   37899999


Q ss_pred             EcC-ccc-HHHHHHHHccccccCeEEEEEEcC
Q 022962          198 ARA-VAE-MRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       198 sn~-~~~-~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                      +.+ +.. +..++    ..|+|||++++..+.
T Consensus       151 v~~a~~~ip~~l~----~qL~~gGrLv~pv~~  178 (215)
T d1jg1a_         151 VTAGAPKIPEPLI----EQLKIGGKLIIPVGS  178 (215)
T ss_dssp             ECSBBSSCCHHHH----HTEEEEEEEEEEECS
T ss_pred             eecccccCCHHHH----HhcCCCCEEEEEEcc
Confidence            885 333 33444    469999999987654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.50  E-value=1.1e-13  Score=123.78  Aligned_cols=107  Identities=13%  Similarity=0.093  Sum_probs=87.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCC-CcCCCCceE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKD-VSFREQYDV  195 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~-~~~~~~fD~  195 (289)
                      +.++.+|||++||+|.+++.+|. ....+|++||+|+.+++.+++|++.++++  +++++++|+.+.-.. ....++||+
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~-~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~  220 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAM-GGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  220 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHh-CCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence            44588999999999999988765 34568999999999999999999999884  699999999764211 011368999


Q ss_pred             EEEcC-------------cccHHHHHHHHccccccCeEEEEEEc
Q 022962          196 AVARA-------------VAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       196 V~sn~-------------~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      |++++             ..++..+++.+.++|+|||.+++...
T Consensus       221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99984             22578899999999999999998764

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.1e-14  Score=127.32  Aligned_cols=107  Identities=17%  Similarity=0.106  Sum_probs=86.6

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc-------C--CCCEEEEeccccccCCCCc
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------Q--LLNVQIVRGRAETLGKDVS  188 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-------~--l~ni~~~~~d~~~~~~~~~  188 (289)
                      .++++.+|||||||+|.+++.+|...+..+++|||+|+.+++.|+++.++.       |  ..+++++++|+.+.+....
T Consensus       148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~  227 (328)
T d1nw3a_         148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER  227 (328)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccc
Confidence            466789999999999999999999888889999999999999998876653       2  3479999999988653210


Q ss_pred             CCCCceEEEEcCc---ccHHHHHHHHccccccCeEEEEEE
Q 022962          189 FREQYDVAVARAV---AEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       189 ~~~~fD~V~sn~~---~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      . ...|+|++|..   .++...++++.+.|||||++++..
T Consensus       228 ~-~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         228 I-ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             H-HHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             c-CcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            0 12588998864   467788999999999999998643

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.46  E-value=1.1e-13  Score=117.90  Aligned_cols=104  Identities=14%  Similarity=0.177  Sum_probs=81.7

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHC------CCCEEEEEeCChHHHHHHHHHHHHc-----CCCCEEEEeccccccCCC
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIAC------PDWKVTLLESMNKRCVFLEHAVSLT-----QLLNVQIVRGRAETLGKD  186 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~------p~~~V~~iD~s~~~l~~a~~~~~~~-----~l~ni~~~~~d~~~~~~~  186 (289)
                      .++++.+|||||||||+.+..+|+..      +..+|+++|+++++++.|+++....     +..|+.++++|..+...+
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~  156 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP  156 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence            45678999999999999999888763      3458999999999999999986543     456899999999875433


Q ss_pred             CcCCCCceEEEEcC-cccHHHHHHHHccccccCeEEEEEEcC
Q 022962          187 VSFREQYDVAVARA-VAEMRILAEYCLPLVRVGGLFVAAKGH  227 (289)
Q Consensus       187 ~~~~~~fD~V~sn~-~~~~~~ll~~~~~~LkpgG~l~~~~g~  227 (289)
                         .++||.|++.+ +...+   +.+.+.|||||++++..+.
T Consensus       157 ---~~~fD~Iiv~~a~~~~p---~~l~~~Lk~gG~lV~pvg~  192 (223)
T d1r18a_         157 ---NAPYNAIHVGAAAPDTP---TELINQLASGGRLIVPVGP  192 (223)
T ss_dssp             ---GCSEEEEEECSCBSSCC---HHHHHTEEEEEEEEEEESC
T ss_pred             ---ccceeeEEEEeechhch---HHHHHhcCCCcEEEEEEec
Confidence               36899999985 33332   2335689999999987763

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2e-13  Score=118.98  Aligned_cols=130  Identities=16%  Similarity=0.115  Sum_probs=88.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-----------------------------
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-----------------------------  171 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-----------------------------  171 (289)
                      ++.+|||||||+|..++..+... ..+|+|+|+|+.|++.+++.++.....                             
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            37899999999998876555443 358999999999999999876543210                             


Q ss_pred             -CEEEEeccccccCC---CCcCCCCceEEEEcC--------cccHHHHHHHHccccccCeEEEEEE---------cC---
Q 022962          172 -NVQIVRGRAETLGK---DVSFREQYDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAK---------GH---  227 (289)
Q Consensus       172 -ni~~~~~d~~~~~~---~~~~~~~fD~V~sn~--------~~~~~~ll~~~~~~LkpgG~l~~~~---------g~---  227 (289)
                       .-.+...|+..-..   .....++||+|++..        ..++..+++.+.++|||||.|++..         +.   
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~  212 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL  212 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccc
Confidence             01234455543211   111235799999863        1357889999999999999998642         11   


Q ss_pred             ----CcHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962          228 ----DPQEEVKNSERAVQLMGASLLQLCSVE  254 (289)
Q Consensus       228 ----~~~~ei~~~~~~l~~~g~~~~~~~~~~  254 (289)
                          -..+   ++.+.+.++||++++.....
T Consensus       213 ~~~~~t~e---~v~~~l~~aGf~v~~~~~~~  240 (263)
T d2g72a1         213 TVVPVSEE---EVREALVRSGYKVRDLRTYI  240 (263)
T ss_dssp             ECCCCCHH---HHHHHHHHTTEEEEEEEEEE
T ss_pred             ccCCCCHH---HHHHHHHHCCCeEEEEEEee
Confidence                1233   45556779999988776543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.44  E-value=1.1e-13  Score=113.15  Aligned_cols=104  Identities=24%  Similarity=0.291  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC-CCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG-KDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~-~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||+|||+|.+++..+..  +++|+++|.|+++++.+++|++.+++++ +++..+...+. ......++||+|+++
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~~~~~~~fD~If~D  117 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhcccccccccCCccceeEEc
Confidence            4789999999999999987654  5699999999999999999999999853 44544544321 100123689999998


Q ss_pred             Cc--ccHHHHHHHH--ccccccCeEEEEEEcC
Q 022962          200 AV--AEMRILAEYC--LPLVRVGGLFVAAKGH  227 (289)
Q Consensus       200 ~~--~~~~~ll~~~--~~~LkpgG~l~~~~g~  227 (289)
                      +.  .+...++..+  ..+|+|||.+++++..
T Consensus       118 PPY~~~~~~~l~~l~~~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         118 PPYAMDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             CCTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             cccccCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence            52  1222222222  3689999999998754

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=3.9e-13  Score=111.03  Aligned_cols=133  Identities=13%  Similarity=0.020  Sum_probs=97.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      +.+|||++||||.+|+..+.. ...+|++||.|.++++.+++|++.++.++++++++|+.++...  ..++||+|++++.
T Consensus        44 ~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~--~~~~fDlIf~DPP  120 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ--KGTPHNIVFVDPP  120 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS--CCCCEEEEEECCS
T ss_pred             hhhhhhhhccccceeeeEEec-CcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccc--cccccCEEEEcCc
Confidence            679999999999999986644 5679999999999999999999999998999999999876432  2478999999952


Q ss_pred             ---ccHHHHHHHHc--cccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962          202 ---AEMRILAEYCL--PLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  270 (289)
Q Consensus       202 ---~~~~~ll~~~~--~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~  270 (289)
                         .....++..+.  .+|+++|.+++++.....  +...     ..+|.+.+..      .+|.-.+.+++|.
T Consensus       121 Y~~~~~~~~l~~l~~~~~L~~~~iIiiE~~~~~~--~~~~-----~~~~~i~k~k------~yG~t~i~~~~k~  181 (183)
T d2fpoa1         121 FRRGLLEETINLLEDNGWLADEALIYVESEVENG--LPTV-----PANWSLHREK------VAGQVAYRLYQRE  181 (183)
T ss_dssp             SSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGC--SCCC-----CTTEEEEEEE------EETTEEEEEEEEC
T ss_pred             cccchHHHHHHHHHHCCCCCCCeEEEEEecCcCC--cccC-----CCCcEEEEEE------EeCcEEEEEEEEc
Confidence               23455555543  579999999998643211  1000     1356655543      3466667777665

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=6.2e-13  Score=111.42  Aligned_cols=116  Identities=12%  Similarity=0.101  Sum_probs=81.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  201 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~  201 (289)
                      |.+|||+|||+|.+++.++. .+..+|+|+|+|+.+++.+++|++.++. +.+++++|+..+.      ++||+|++|+.
T Consensus        47 g~~vLDlg~GtG~l~i~a~~-~g~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~~------~~fD~Vi~nPP  118 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGALL-LGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN------SRVDIVIMNPP  118 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC------CCCSEEEECCC
T ss_pred             CCEEEECcCcchHHHHHHHH-cCCCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhhC------CcCcEEEEcCc
Confidence            78999999999999998775 4557999999999999999999999887 5889999987753      67999999952


Q ss_pred             -------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          202 -------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       202 -------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                             .+ ..++..   .+.+++..+..+-. .......+.......|+.+...
T Consensus       119 ~~~~~~~~d-~~~l~~---~~~~~~~v~~ih~~-~~~~~~~i~~~~~~~g~~i~~~  169 (201)
T d1wy7a1         119 FGSQRKHAD-RPFLLK---AFEISDVVYSIHLA-KPEVRRFIEKFSWEHGFVVTHR  169 (201)
T ss_dssp             CSSSSTTTT-HHHHHH---HHHHCSEEEEEEEC-CHHHHHHHHHHHHHTTEEEEEE
T ss_pred             ccccccccc-HHHHHH---HHhhcccchhcccc-hHHHHHHHHHHHhhcCceEEEE
Confidence                   12 233333   23445555544322 1222222334455778766544

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.7e-13  Score=117.73  Aligned_cols=104  Identities=14%  Similarity=0.202  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHH----CCC--CEEEEEeCChHHHHHHHHHHHHcC-CCCE--EEEeccccccCC---CCcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIA----CPD--WKVTLLESMNKRCVFLEHAVSLTQ-LLNV--QIVRGRAETLGK---DVSF  189 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~----~p~--~~V~~iD~s~~~l~~a~~~~~~~~-l~ni--~~~~~d~~~~~~---~~~~  189 (289)
                      ..+|||||||+|..+..++..    +++  .+++|||+|+.|++.+++.+.... +.++  .+.+.+++++..   ....
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence            458999999999988877653    333  478999999999999999876543 3444  445566554311   1112


Q ss_pred             CCCceEEEEcC----cccHHHHHHHHccccccCeEEEEEE
Q 022962          190 REQYDVAVARA----VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       190 ~~~fD~V~sn~----~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +++||+|+|..    +.++..+++.+.++|+|||.+++..
T Consensus       121 ~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEE
Confidence            47899999974    5688999999999999999998764

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.41  E-value=2.8e-13  Score=120.34  Aligned_cols=126  Identities=14%  Similarity=0.173  Sum_probs=92.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCC-cCCCCceEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDV-SFREQYDVA  196 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~-~~~~~fD~V  196 (289)
                      .++.+|||++||||.+++.+|..  +++|++||.|+.+++.|++|++.++++  +++++++|+.++-... ...++||+|
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I  208 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  208 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence            34789999999999999988754  569999999999999999999999885  4999999998753210 113689999


Q ss_pred             EEcCc--------------ccHHHHHHHHccccccCeEEEEEEcC---CcHHHHHHHH-HHHHHhCCeE
Q 022962          197 VARAV--------------AEMRILAEYCLPLVRVGGLFVAAKGH---DPQEEVKNSE-RAVQLMGASL  247 (289)
Q Consensus       197 ~sn~~--------------~~~~~ll~~~~~~LkpgG~l~~~~g~---~~~~ei~~~~-~~l~~~g~~~  247 (289)
                      ++++.              ..+..+++.+..+|+|||.+++....   .....+.++. +.+...|-.+
T Consensus       209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v  277 (309)
T d2igta1         209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVV  277 (309)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEE
T ss_pred             EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcc
Confidence            99731              23567888999999999976655432   2334444433 3344556544

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=8.2e-13  Score=121.47  Aligned_cols=107  Identities=16%  Similarity=0.146  Sum_probs=80.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-------C--CCEEE-EeccccccCCCC
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-------L--LNVQI-VRGRAETLGKDV  187 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-------l--~ni~~-~~~d~~~~~~~~  187 (289)
                      .+++++++||||||+|...+.+|..++..+|+|||+|+.+++.|++++++.+       .  ..+.+ ..++..+.+...
T Consensus       213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d  292 (406)
T d1u2za_         213 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA  292 (406)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred             CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccc
Confidence            5678999999999999999999998888899999999999999999887643       1  22333 233333221100


Q ss_pred             cCCCCceEEEEcCc---ccHHHHHHHHccccccCeEEEEE
Q 022962          188 SFREQYDVAVARAV---AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       188 ~~~~~fD~V~sn~~---~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..-..+|+|++|..   .++...+.++.+.|||||+++..
T Consensus       293 ~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         293 ELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             HHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence            00135789998853   46788899999999999999864

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.33  E-value=2.2e-12  Score=106.36  Aligned_cols=105  Identities=13%  Similarity=0.088  Sum_probs=84.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCC-CcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD-VSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~-~~~~~~fD~V~sn  199 (289)
                      +.+|||++||||.+|+..+.. ...+|++||.|.++++.+++|++.++.. +++++++|+..+-.. .....+||+|+++
T Consensus        42 ~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflD  120 (182)
T d2fhpa1          42 GGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD  120 (182)
T ss_dssp             SCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEec
Confidence            789999999999999987754 5668999999999999999999998875 699999999864211 0113589999999


Q ss_pred             C---cccHHHHHHHHc--cccccCeEEEEEEcC
Q 022962          200 A---VAEMRILAEYCL--PLVRVGGLFVAAKGH  227 (289)
Q Consensus       200 ~---~~~~~~ll~~~~--~~LkpgG~l~~~~g~  227 (289)
                      +   ...+..+++.+.  .+|+++|.+++++..
T Consensus       121 PPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         121 PPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             CCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            5   334566676653  589999999998753

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.33  E-value=1.1e-12  Score=109.32  Aligned_cols=67  Identities=15%  Similarity=0.166  Sum_probs=57.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      |.+|||+|||+|.+++.++.. +..+|+|||+|+.+++.|++|+     .++.++++|+.+++      ++||+|++|.
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l~------~~fD~Vi~NP  115 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEIS------GKYDTWIMNP  115 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGCC------CCEEEEEECC
T ss_pred             CCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHcc-----ccccEEEEehhhcC------CcceEEEeCc
Confidence            889999999999999887754 4568999999999999999874     36889999998763      6799999994

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.9e-12  Score=108.65  Aligned_cols=103  Identities=25%  Similarity=0.272  Sum_probs=87.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCC---CcCCCCceE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKD---VSFREQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~---~~~~~~fD~  195 (289)
                      +..+||+||||+|+.++.+|...| +++|+.+|.+++..+.|+++.+..|+.+ ++++.+|+.+....   ....++||+
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~  138 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV  138 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence            367999999999999999998875 6899999999999999999999999865 99999998663211   011368999


Q ss_pred             EEEcCc-ccHHHHHHHHccccccCeEEEE
Q 022962          196 AVARAV-AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       196 V~sn~~-~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      |+..+- ..+...++.+.+.|+|||.+++
T Consensus       139 ifiD~dk~~y~~~~~~~~~lL~~GGvii~  167 (219)
T d2avda1         139 AVVDADKENCSAYYERCLQLLRPGGILAV  167 (219)
T ss_dssp             EEECSCSTTHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEeCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence            999864 4678888999999999999986

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=3.7e-11  Score=108.56  Aligned_cols=145  Identities=15%  Similarity=0.104  Sum_probs=105.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-CcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-~~~~~~fD~V~  197 (289)
                      ..++.+|||+.||+|.+++.||..  ..+|+|||.++.+++.|++|++.++++|+++++++.++.... .....+||+|+
T Consensus       210 ~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi  287 (358)
T d1uwva2         210 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL  287 (358)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred             cCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence            445789999999999999999965  579999999999999999999999999999999999874322 12236799999


Q ss_pred             EcCc-ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEEEEe
Q 022962          198 ARAV-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVVCLK  269 (289)
Q Consensus       198 sn~~-~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~~~k  269 (289)
                      .+.. +.....++.+.+ ++|.-.+|+..  +..--..++. .|.+.||.+.++..++ +|....-..+++++|
T Consensus       288 lDPPR~G~~~~~~~l~~-~~~~~ivYVSC--np~TlaRDl~-~l~~~gy~l~~i~~~D~FP~T~HvE~v~~l~R  357 (358)
T d1uwva2         288 LDPARAGAAGVMQQIIK-LEPIRIVYVSC--NPATLARDSE-ALLKAGYTIARLAMLDMFPHTGHLESMVLFSR  357 (358)
T ss_dssp             ECCCTTCCHHHHHHHHH-HCCSEEEEEES--CHHHHHHHHH-HHHHTTCEEEEEEEECCSTTSSCCEEEEEEEC
T ss_pred             eCCCCccHHHHHHHHHH-cCCCEEEEEeC--CHHHHHHHHH-HHHHCCCeEeEEEEEecCCCCccEEEEEEEEe
Confidence            9842 222345555443 35665555543  3333334433 4556899999999997 566656666666664

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=9.4e-12  Score=103.30  Aligned_cols=105  Identities=12%  Similarity=0.100  Sum_probs=87.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~V~s  198 (289)
                      ++..+||++||+|..+..++..+|+++|+|+|.+++|++.|+++.+.++ .++++++++..++...  ....++||.|+.
T Consensus        23 ~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~  101 (192)
T d1m6ya2          23 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLGIEKVDGILM  101 (192)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTTCSCEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhHHHHHHHcCCCCcceeee
Confidence            4789999999999999999998999999999999999999999888776 3799999988764321  011368999987


Q ss_pred             c-------------CcccHHHHHHHHccccccCeEEEEEEc
Q 022962          199 R-------------AVAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       199 n-------------~~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      .             .+......+..+.++|+|||.+++..-
T Consensus       102 DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f  142 (192)
T d1m6ya2         102 DLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF  142 (192)
T ss_dssp             ECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred             ccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence            5             244678999999999999999998663

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=1.2e-11  Score=104.48  Aligned_cols=102  Identities=15%  Similarity=0.177  Sum_probs=82.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCC---cCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV---SFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~---~~~~~fD~V  196 (289)
                      +.+|||+|||+|..++.+|...+ +++|+++|+++++++.|+++++..|+. +|+++.+|..+.-...   ...++||+|
T Consensus        57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~i  136 (214)
T d2cl5a1          57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  136 (214)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEE
T ss_pred             CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccccee
Confidence            67999999999999999998764 689999999999999999999999986 4999999998752210   012579999


Q ss_pred             EEcCccc-H--HHHHHHHccccccCeEEEE
Q 022962          197 VARAVAE-M--RILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       197 ~sn~~~~-~--~~ll~~~~~~LkpgG~l~~  223 (289)
                      +..+..+ +  ...+.++.++|+|||.+++
T Consensus       137 fiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         137 FLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             eecccccccccHHHHHHHhCccCCCcEEEE
Confidence            9986443 2  2346677899999998775

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.23  E-value=9.9e-12  Score=105.78  Aligned_cols=102  Identities=18%  Similarity=0.201  Sum_probs=87.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCC----CcCCCCceE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKD----VSFREQYDV  195 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~----~~~~~~fD~  195 (289)
                      ..+||+||||+|+.++.+|...| +++|+.+|.+++.++.|+++.++.|+.+ |+++.+++.+.-..    ....++||+
T Consensus        60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~  139 (227)
T d1susa1          60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF  139 (227)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSE
T ss_pred             CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeE
Confidence            67999999999999999998876 6899999999999999999999999864 99999999764211    011368999


Q ss_pred             EEEcCc-ccHHHHHHHHccccccCeEEEE
Q 022962          196 AVARAV-AEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       196 V~sn~~-~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      |+..+- ..+...++.+.++|+|||.+++
T Consensus       140 iFiDa~k~~y~~~~e~~~~ll~~gGiii~  168 (227)
T d1susa1         140 IFVDADKDNYLNYHKRLIDLVKVGGVIGY  168 (227)
T ss_dssp             EEECSCSTTHHHHHHHHHHHBCTTCCEEE
T ss_pred             EEeccchhhhHHHHHHHHhhcCCCcEEEE
Confidence            999864 4678899999999999999986

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.21  E-value=6.3e-11  Score=97.43  Aligned_cols=105  Identities=13%  Similarity=0.085  Sum_probs=82.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC--EEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n--i~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +.+|||+.||||.+|+..+. ....+|+.||.|.++++.+++|++.++..+  ..++..|+.+.........+||+|++.
T Consensus        44 ~~~vLDlFaGsG~~glEalS-RGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD  122 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALS-RQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  122 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHH-TTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             cceEeecccCccceeeeeee-ecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence            67999999999999999764 467799999999999999999999998753  777778876643321223579999998


Q ss_pred             C---cccHHHHHHHH--ccccccCeEEEEEEcC
Q 022962          200 A---VAEMRILAEYC--LPLVRVGGLFVAAKGH  227 (289)
Q Consensus       200 ~---~~~~~~ll~~~--~~~LkpgG~l~~~~g~  227 (289)
                      +   ......+++.+  ..+|+++|.+++++..
T Consensus       123 PPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         123 PPFHFNLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             hhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            5   23355666655  3589999999998754

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.14  E-value=6.3e-10  Score=97.13  Aligned_cols=146  Identities=12%  Similarity=0.117  Sum_probs=105.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH----------cCCCCEEEEeccccccCCCCcCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL----------TQLLNVQIVRGRAETLGKDVSFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~----------~~l~ni~~~~~d~~~~~~~~~~~~  191 (289)
                      +.+||.||.|.|..+..+.+ ++..+|++||+++++++.|++....          ..-++++++.+|+..+-..   .+
T Consensus        73 p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~---~~  148 (276)
T d1mjfa_          73 PKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN---NR  148 (276)
T ss_dssp             CCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH---CC
T ss_pred             CceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc---cC
Confidence            67999999999988877664 5667999999999999999874321          1224699999999876432   36


Q ss_pred             CceEEEEcCccc--------HHHHHHHHccccccCeEEEEEEc--CCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCc
Q 022962          192 QYDVAVARAVAE--------MRILAEYCLPLVRVGGLFVAAKG--HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ  261 (289)
Q Consensus       192 ~fD~V~sn~~~~--------~~~ll~~~~~~LkpgG~l~~~~g--~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~  261 (289)
                      +||+|++....+        -.++++.+.+.|+|||.+++-.+  ....+.+..+.+.+++. |..+....+..|.-.+.
T Consensus       149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~~y~~~vP~y~~~  227 (276)
T d1mjfa_         149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVYYYSFPVIGYASP  227 (276)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEEEEEECCTTSSSS
T ss_pred             CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhh-CCeeEEEEecCcCCCCc
Confidence            899999874321        26899999999999999987553  23456666777777776 55555544444554566


Q ss_pred             eEEEEEEecCC
Q 022962          262 RTAVVCLKSRR  272 (289)
Q Consensus       262 r~lv~~~k~~~  272 (289)
                      +..+++.+...
T Consensus       228 w~f~~as~~~~  238 (276)
T d1mjfa_         228 WAFLVGVKGDI  238 (276)
T ss_dssp             EEEEEEEESSC
T ss_pred             eEEEEEeCCCC
Confidence            77777766533

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.10  E-value=1.5e-09  Score=92.99  Aligned_cols=117  Identities=21%  Similarity=0.189  Sum_probs=86.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-CCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ...+|||||||+|.+++.+++++|+.+++..|.- ..+       +..+ .++++++.+|..+-.      ...|++++.
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi-------~~~~~~~ri~~~~gd~~~~~------p~~D~~~l~  146 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVI-------ENAPPLSGIEHVGGDMFASV------PQGDAMILK  146 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHH-------TTCCCCTTEEEEECCTTTCC------CCEEEEEEE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhh-------hccCCCCCeEEecCCccccc------ccceEEEEe
Confidence            3579999999999999999999999999999983 332       2222 357999999986521      245999976


Q ss_pred             Cc------ccHHHHHHHHccccccCeEEEEEEc------CCcHHH--------------------HHHHHHHHHHhCCeE
Q 022962          200 AV------AEMRILAEYCLPLVRVGGLFVAAKG------HDPQEE--------------------VKNSERAVQLMGASL  247 (289)
Q Consensus       200 ~~------~~~~~ll~~~~~~LkpgG~l~~~~g------~~~~~e--------------------i~~~~~~l~~~g~~~  247 (289)
                      .+      ++-..+++.+++.|+|||++++...      ......                    ..++.+.++++||+.
T Consensus       147 ~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~  226 (244)
T d1fp1d2         147 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSK  226 (244)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSE
T ss_pred             hhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCc
Confidence            42      2456899999999999999987541      111110                    234567788999998


Q ss_pred             eEEe
Q 022962          248 LQLC  251 (289)
Q Consensus       248 ~~~~  251 (289)
                      +++.
T Consensus       227 v~v~  230 (244)
T d1fp1d2         227 FQVA  230 (244)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            8875

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=1.2e-09  Score=97.13  Aligned_cols=145  Identities=9%  Similarity=0.076  Sum_probs=95.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHH-----CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIA-----CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDV  195 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~-----~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~  195 (289)
                      ++.+|||.|||+|.+.+.+...     .+..+++|+|+++.++..|+.++...+. +..+.++|......    ..+||+
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~----~~~fD~  191 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLL----VDPVDV  191 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCC----CCCEEE
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-hhhhhccccccccc----cccccc
Confidence            4679999999999988887643     2345899999999999999999888776 46667777654322    368999


Q ss_pred             EEEcCc----------------------ccHHHHHHHHccccccCeEEEEEEcCCc--HHHHHHHHHHHHHhCCeEeEEe
Q 022962          196 AVARAV----------------------AEMRILAEYCLPLVRVGGLFVAAKGHDP--QEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       196 V~sn~~----------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~--~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      |++|+.                      .....+++.+.+.|+|||++++..+...  ...-..+.+.+.+.+ .+..+.
T Consensus       192 vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~-~i~~ii  270 (328)
T d2f8la1         192 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNG-HIEGII  270 (328)
T ss_dssp             EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHE-EEEEEE
T ss_pred             cccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCC-cEEEEE
Confidence            999941                      0134578999999999999887764221  111122333343433 455554


Q ss_pred             eee---cCCCCCceEEEEEEecC
Q 022962          252 SVE---SQSPFGQRTAVVCLKSR  271 (289)
Q Consensus       252 ~~~---~~~~~~~r~lv~~~k~~  271 (289)
                      .+.   +........+++++|..
T Consensus       271 ~lp~~~F~~~~~~t~ilvl~K~~  293 (328)
T d2f8la1         271 KLPETLFKSEQARKSILILEKAD  293 (328)
T ss_dssp             ECCGGGSCC-CCCEEEEEEEECC
T ss_pred             ECCccccCCCCCCeEEEEEECCC
Confidence            432   12222344566777653

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.07  E-value=3.1e-09  Score=93.38  Aligned_cols=146  Identities=14%  Similarity=0.075  Sum_probs=106.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc----CCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT----QLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~----~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..+||=||.|.|..+..+++..+..+|++||+++++++.+++.....    .-++++++.+|+..+-..  .+++||+|+
T Consensus        90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDvIi  167 (295)
T d1inla_          90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK--FKNEFDVII  167 (295)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG--CSSCEEEEE
T ss_pred             CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhc--CCCCCCEEE
Confidence            57999999999998877776556789999999999999999865432    224799999999886442  247899999


Q ss_pred             EcCcc---------cHHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCC-CCceEEE
Q 022962          198 ARAVA---------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSP-FGQRTAV  265 (289)
Q Consensus       198 sn~~~---------~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~-~~~r~lv  265 (289)
                      +....         --.++++.+++.|+|||.+++-.+.  ...+.+..+.+.++.. |..+.......|.- .|.+..+
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v-F~~v~~y~~~vPtyp~G~w~f~  246 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRVYLGFMTTYPSGMWSYT  246 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEEEEEECTTSTTSEEEEE
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhh-cceeEEEEeeeceecCcccEEE
Confidence            87422         1378999999999999999876553  3455666777777776 54455443334443 3566777


Q ss_pred             EEEec
Q 022962          266 VCLKS  270 (289)
Q Consensus       266 ~~~k~  270 (289)
                      ++.|.
T Consensus       247 ~aSk~  251 (295)
T d1inla_         247 FASKG  251 (295)
T ss_dssp             EEESS
T ss_pred             EEeCC
Confidence            77664

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.03  E-value=7.7e-10  Score=98.19  Aligned_cols=146  Identities=12%  Similarity=0.043  Sum_probs=100.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc-----CCCCEEEEeccccccCCCCcCCCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-----QLLNVQIVRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-----~l~ni~~~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      ..+||.||.|.|..+..+.+..+..+|++||++++.++.|++.....     .-++++++.+|+.++-..  .+++||+|
T Consensus        78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~--~~~~yDvI  155 (312)
T d1uira_          78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER--TEERYDVV  155 (312)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH--CCCCEEEE
T ss_pred             cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh--cCCcccEE
Confidence            57999999999998888776666789999999999999999875432     224699999999886432  24689999


Q ss_pred             EEcCcc---------c--HHHHHHHHccccccCeEEEEEEcC--CcHHHH-HHHHHHHHHhCCeEeEEeeeecCCCCCce
Q 022962          197 VARAVA---------E--MRILAEYCLPLVRVGGLFVAAKGH--DPQEEV-KNSERAVQLMGASLLQLCSVESQSPFGQR  262 (289)
Q Consensus       197 ~sn~~~---------~--~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei-~~~~~~l~~~g~~~~~~~~~~~~~~~~~r  262 (289)
                      ++....         .  -.++++.+.+.|+|||.+++-.+.  ....++ ..+.+.++.. |..+.......|.-.+.+
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~-F~~V~~y~~~vPs~~~~w  234 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRSYKNHIPGFFLNF  234 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEEEEEEEGGGTEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHh-CceEEEEEeeeCCcCCCC
Confidence            976311         1  268999999999999999875532  122333 3344445544 555555444445444455


Q ss_pred             EEEEEEec
Q 022962          263 TAVVCLKS  270 (289)
Q Consensus       263 ~lv~~~k~  270 (289)
                      ..+++.+.
T Consensus       235 ~f~~aS~~  242 (312)
T d1uira_         235 GFLLASDA  242 (312)
T ss_dssp             EEEEEESS
T ss_pred             EeEEEeCC
Confidence            56666654

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.8e-09  Score=91.75  Aligned_cols=146  Identities=11%  Similarity=0.030  Sum_probs=105.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH----cCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL----TQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~----~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..+||-||-|.|..+..+.+..+..+|++||+++++++.|++....    ..-.+++++.+|+..+-..  ..++||+|+
T Consensus        79 pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~--~~~~yDvIi  156 (285)
T d2o07a1          79 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ--NQDAFDVII  156 (285)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT--CSSCEEEEE
T ss_pred             cCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc--CCCCCCEEE
Confidence            5799999999999888877655678999999999999999986532    2224799999998876432  246899999


Q ss_pred             EcCcc--------cHHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCC-ceEEEE
Q 022962          198 ARAVA--------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVV  266 (289)
Q Consensus       198 sn~~~--------~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~-~r~lv~  266 (289)
                      +....        --.++++.+++.|+|||.+++-.+.  ...+.+..+.+.++.. |..+.......|.-.+ .+..++
T Consensus       157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~~y~~~vP~~~~g~w~f~~  235 (285)
T d2o07a1         157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVAYAYCTIPTYPSGQIGFML  235 (285)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEEEEEEECTTSGGGEEEEEE
T ss_pred             EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhc-CCeeeEEeeeeeecCCCCeEEEE
Confidence            97432        1257899999999999999976543  3455566666777665 5555555444565444 456666


Q ss_pred             EEec
Q 022962          267 CLKS  270 (289)
Q Consensus       267 ~~k~  270 (289)
                      +.|.
T Consensus       236 aSk~  239 (285)
T d2o07a1         236 CSKN  239 (285)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            6654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.95  E-value=8.3e-09  Score=89.74  Aligned_cols=146  Identities=17%  Similarity=0.089  Sum_probs=104.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH----cCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL----TQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~----~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..+||-||-|.|..+..+.+..+..+|+.||++++.++.|++....    ..-.+++++.+|+..+-..  .+++||+|+
T Consensus        76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~--~~~~yDvIi  153 (274)
T d1iy9a_          76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK--SENQYDVIM  153 (274)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT--CCSCEEEEE
T ss_pred             cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh--cCCCCCEEE
Confidence            5799999999999888877655668999999999999999986543    1224799999999875432  247899999


Q ss_pred             EcCcc--------cHHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCC-CceEEEE
Q 022962          198 ARAVA--------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPF-GQRTAVV  266 (289)
Q Consensus       198 sn~~~--------~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~-~~r~lv~  266 (289)
                      .....        --+++++.+++.|+|||.++.-.+.  ...+.+..+.+.+++.. ..+.......|.-. +.+..++
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F-~~v~~y~~~vPsy~~g~w~f~~  232 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIF-PITKLYTANIPTYPSGLWTFTI  232 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTC-SEEEEEEECCTTSGGGCEEEEE
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhc-CceEEEEEEeeecCCCceEEEE
Confidence            98432        1478999999999999999876543  24455566777777664 34444433345433 4566666


Q ss_pred             EEec
Q 022962          267 CLKS  270 (289)
Q Consensus       267 ~~k~  270 (289)
                      +.+.
T Consensus       233 aS~~  236 (274)
T d1iy9a_         233 GSKK  236 (274)
T ss_dssp             EESS
T ss_pred             EcCC
Confidence            6654

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.1e-08  Score=89.34  Aligned_cols=129  Identities=15%  Similarity=0.071  Sum_probs=93.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ..++.+|||+|+|.|.=++.+|....++.|+|+|+++..+..++++++++|.+++.+...|......  ...+.||.|+.
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~--~~~~~fd~IL~  177 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW--CGEQQFDRILL  177 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHH--HTTCCEEEEEE
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchh--cccccccEEEE
Confidence            4568899999999999999999887778999999999999999999999999887766655432211  12367999998


Q ss_pred             cCc-------------------------c-cHHHHHHHHccccccCeEEEEEEcCCcHHHHHH-HHHHHHHh-CCeEeE
Q 022962          199 RAV-------------------------A-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKN-SERAVQLM-GASLLQ  249 (289)
Q Consensus       199 n~~-------------------------~-~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~-~~~~l~~~-g~~~~~  249 (289)
                      .+.                         . --..++..+.++|||||+++...-.-..+|=++ +...+++. ++++++
T Consensus       178 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~~~  256 (284)
T d1sqga2         178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCE  256 (284)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECS
T ss_pred             eccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCcEEec
Confidence            730                         0 136889999999999999987654322222222 22344453 565543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.92  E-value=7.7e-09  Score=91.30  Aligned_cols=146  Identities=11%  Similarity=0.041  Sum_probs=102.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc----CCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT----QLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~----~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..+||-||-|.|..+..+.+..+..+|++||+++++++.+++....+    .-++++++.+|...+-..  ..++||+|+
T Consensus       107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~--~~~~yDvII  184 (312)
T d2b2ca1         107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN--HKNEFDVII  184 (312)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH--CTTCEEEEE
T ss_pred             CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh--CCCCCCEEE
Confidence            67999999999998888776555679999999999999999865432    224799999999886432  247899999


Q ss_pred             EcCcc--------cHHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCC-CCceEEEE
Q 022962          198 ARAVA--------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSP-FGQRTAVV  266 (289)
Q Consensus       198 sn~~~--------~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~-~~~r~lv~  266 (289)
                      +....        --.++++.+.+.|+|||.++.-.+.  ...+.+..+.+.+++. |..+.......|.- .|.+..++
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v-F~~v~~y~~~vPtyp~G~w~f~~  263 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYAQSIVSTYPSGSMGYLI  263 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEEEEECTTSGGGEEEEEE
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhc-cceEEEeeeccCCcCCccceeeE
Confidence            97422        2368899999999999999976543  2345556677777665 44444443333443 25666677


Q ss_pred             EEec
Q 022962          267 CLKS  270 (289)
Q Consensus       267 ~~k~  270 (289)
                      +.+.
T Consensus       264 aSk~  267 (312)
T d2b2ca1         264 CAKN  267 (312)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            6654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.90  E-value=1.6e-08  Score=88.53  Aligned_cols=149  Identities=11%  Similarity=0.055  Sum_probs=106.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH----cCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL----TQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~----~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ..+||=||-|.|..+..+.+..+..+|++||++++.++.+++....    ..-++++++.+|...+-.. ..+++||+|+
T Consensus        81 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~-~~~~~yDvIi  159 (290)
T d1xj5a_          81 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN-AAEGSYDAVI  159 (290)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT-SCTTCEEEEE
T ss_pred             CcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhh-ccccCccEEE
Confidence            5699999999999888877655667999999999999999985432    2234799999998875422 1135899999


Q ss_pred             EcCcc--------cHHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCC-CceEEEE
Q 022962          198 ARAVA--------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPF-GQRTAVV  266 (289)
Q Consensus       198 sn~~~--------~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~-~~r~lv~  266 (289)
                      .....        --.++++.+++.|+|||.+++-.+.  ...+.+..+.+.+++.............|.-. |.+..++
T Consensus       160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~  239 (290)
T d1xj5a_         160 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFML  239 (290)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEE
T ss_pred             EcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEE
Confidence            87432        1378999999999999999986553  34566777788888887654433222234432 4555666


Q ss_pred             EEecC
Q 022962          267 CLKSR  271 (289)
Q Consensus       267 ~~k~~  271 (289)
                      +.+..
T Consensus       240 as~~~  244 (290)
T d1xj5a_         240 CSTEG  244 (290)
T ss_dssp             EECSS
T ss_pred             EeCCC
Confidence            66653

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.89  E-value=9.9e-09  Score=90.93  Aligned_cols=129  Identities=19%  Similarity=0.170  Sum_probs=96.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      .++|.+|||+|||.|.=+..++... ..+.|+++|+++..+..++++.+++|..|+.+.+.|...+..   ....||.|+
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~---~~~~fD~IL  190 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE---LNVEFDKIL  190 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG---GCCCEEEEE
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccc---ccccccEEE
Confidence            4568999999999999888888665 468999999999999999999999999999888888776643   247899999


Q ss_pred             EcCc--------------------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHH-HHHHHHHhCCeEeEE
Q 022962          198 ARAV--------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKN-SERAVQLMGASLLQL  250 (289)
Q Consensus       198 sn~~--------------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~-~~~~l~~~g~~~~~~  250 (289)
                      ..+.                          .--..++..+.++|||||+++...-.-..+|=+. +...++..+++++.+
T Consensus       191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~~~~~  270 (313)
T d1ixka_         191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELLPL  270 (313)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEECC
T ss_pred             EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCEEeec
Confidence            8620                          1136888999999999999887654322222111 223455677665543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.2e-08  Score=87.85  Aligned_cols=106  Identities=9%  Similarity=-0.025  Sum_probs=83.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      .++.+|||+|||+|.=++.+|.. .+..+|+|+|+++..+..++++++++|..|+.+...|...+.......+.||.|+.
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~  172 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL  172 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence            35889999999999988888865 45789999999999999999999999999999999998876543222367999998


Q ss_pred             cCc---------------------------cc-HHHHHHHHccccccCeEEEEEEc
Q 022962          199 RAV---------------------------AE-MRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       199 n~~---------------------------~~-~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      .+.                           .. -..++..+.. ++|||.++...-
T Consensus       173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~-l~~gG~lvYsTC  227 (293)
T d2b9ea1         173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-FPSLQRLVYSTC  227 (293)
T ss_dssp             CCCCCC------------------CCHHHHHHHHHHHHHHHTT-CTTCCEEEEEES
T ss_pred             cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhhh-cccccEEEEeec
Confidence            730                           01 1346666664 799999886554

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.87  E-value=1.6e-08  Score=86.39  Aligned_cols=118  Identities=14%  Similarity=0.165  Sum_probs=86.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-CCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      ..+|+|||||+|.+++.+++++|+.+++..|.. ..+       +..+ .++|+++.+|..+-.      ..+|+++++.
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi-------~~~~~~~rv~~~~gD~f~~~------p~aD~~~l~~  146 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVV-------ENLSGSNNLTYVGGDMFTSI------PNADAVLLKY  146 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHH-------TTCCCBTTEEEEECCTTTCC------CCCSEEEEES
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHH-------HhCcccCceEEEecCcccCC------CCCcEEEEEe
Confidence            468999999999999999999999999999983 332       2223 247999999987621      3579999874


Q ss_pred             c------ccHHHHHHHHccccccC---eEEEEEEc---C-CcH---H------------------HHHHHHHHHHHhCCe
Q 022962          201 V------AEMRILAEYCLPLVRVG---GLFVAAKG---H-DPQ---E------------------EVKNSERAVQLMGAS  246 (289)
Q Consensus       201 ~------~~~~~ll~~~~~~Lkpg---G~l~~~~g---~-~~~---~------------------ei~~~~~~l~~~g~~  246 (289)
                      +      ++-..+|+.+++.|+||   |++++...   . ...   .                  ...+..+.++++||+
T Consensus       147 vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~  226 (244)
T d1fp2a2         147 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQ  226 (244)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCC
T ss_pred             ecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCc
Confidence            2      23468999999999998   66765431   1 100   0                  124566778899999


Q ss_pred             EeEEeee
Q 022962          247 LLQLCSV  253 (289)
Q Consensus       247 ~~~~~~~  253 (289)
                      ..++.+.
T Consensus       227 ~~~i~~~  233 (244)
T d1fp2a2         227 HYKISPL  233 (244)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEC
Confidence            9888654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.85  E-value=3.8e-09  Score=95.80  Aligned_cols=102  Identities=14%  Similarity=0.138  Sum_probs=86.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC---------------EEEEeccccccCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN---------------VQIVRGRAETLGKD  186 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n---------------i~~~~~d~~~~~~~  186 (289)
                      +.+|||..||||.-|+..|.+.+..+|+++|+|+.+++.+++|++.++..+               +.+.+.|+..+...
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~  125 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  125 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence            679999999999999999988777899999999999999999999987643               55666776554321


Q ss_pred             CcCCCCceEEEEcCcccHHHHHHHHccccccCeEEEEEE
Q 022962          187 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       187 ~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                        ..+.||+|...++.....+++.+.+.++.||.+.+..
T Consensus       126 --~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         126 --RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             --STTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --hcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEe
Confidence              1367999999998888899999999999999999764

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.80  E-value=1.5e-08  Score=84.27  Aligned_cols=93  Identities=12%  Similarity=0.049  Sum_probs=69.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|||.|||+|.+...+.... ....++|+|+++.++..+         .+..++++|......    ...||+|++|
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~~----~~~fd~ii~n   85 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEP----GEAFDLILGN   85 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCC----SSCEEEEEEC
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhcccc----ccccceeccc
Confidence            47899999999999887776554 457899999998654321         245677888766543    3689999999


Q ss_pred             Cc--------------------------------c-cHHHHHHHHccccccCeEEEEEEc
Q 022962          200 AV--------------------------------A-EMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       200 ~~--------------------------------~-~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      ..                                . -...+++.+.+.|++||++.+..+
T Consensus        86 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p  145 (223)
T d2ih2a1          86 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  145 (223)
T ss_dssp             CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence            20                                0 134677889999999999988764

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.76  E-value=1.3e-08  Score=86.87  Aligned_cols=119  Identities=16%  Similarity=0.083  Sum_probs=83.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      ..+|+|||||+|.+++.+++++|+.+++..|..+. ++.+      ....+++++.+|..+- .+     ..|+++... 
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~------~~~~r~~~~~~d~~~~-~P-----~ad~~~l~~v  148 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA------PSYPGVEHVGGDMFVS-IP-----KADAVFMKWI  148 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC------CCCTTEEEEECCTTTC-CC-----CCSCEECSSS
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc------ccCCceEEeccccccc-CC-----CcceEEEEEE
Confidence            46899999999999999999999999999998552 2111      1124799999998652 11     134445442 


Q ss_pred             -----cccHHHHHHHHccccccCeEEEEEEc------CCc-HHH--------------------HHHHHHHHHHhCCeEe
Q 022962          201 -----VAEMRILAEYCLPLVRVGGLFVAAKG------HDP-QEE--------------------VKNSERAVQLMGASLL  248 (289)
Q Consensus       201 -----~~~~~~ll~~~~~~LkpgG~l~~~~g------~~~-~~e--------------------i~~~~~~l~~~g~~~~  248 (289)
                           .++...+++++++.|+|||++++...      ... ...                    ..+..+.++++||+.+
T Consensus       149 lh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~v  228 (243)
T d1kyza2         149 CHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGF  228 (243)
T ss_dssp             STTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCE
T ss_pred             eecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcE
Confidence                 33567899999999999999887531      111 110                    2345567889999988


Q ss_pred             EEeee
Q 022962          249 QLCSV  253 (289)
Q Consensus       249 ~~~~~  253 (289)
                      ++...
T Consensus       229 kv~~~  233 (243)
T d1kyza2         229 KVHCN  233 (243)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            87543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.73  E-value=1.8e-08  Score=85.67  Aligned_cols=73  Identities=21%  Similarity=0.129  Sum_probs=59.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .++++|||||||+|.++..|+..  +.+|+|||+++.+++.+++....  .+|++++++|+.++..+.   .....|++|
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~--~~n~~i~~~D~l~~~~~~---~~~~~vv~N   92 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK---NQSYKIFGN   92 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS---SCCCEEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhc--ccchhhhhhhhhhccccc---cccceeeee
Confidence            45899999999999999999976  57999999999999998885543  458999999999876432   234467888

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.71  E-value=1.2e-08  Score=84.04  Aligned_cols=100  Identities=15%  Similarity=0.127  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCCChHHHHHH----HHC----CCCEEEEEeCChHHHHHHHHHH--------------HHc----CC-----
Q 022962          122 NLKLVDVGTGAGLPGLVLA----IAC----PDWKVTLLESMNKRCVFLEHAV--------------SLT----QL-----  170 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la----~~~----p~~~V~~iD~s~~~l~~a~~~~--------------~~~----~l-----  170 (289)
                      ..+|+++|||||--...+|    ...    ...+|+|+|+|+.+++.|++..              ...    +.     
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~  104 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  104 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence            4689999999998443333    221    2358999999999999997421              110    00     


Q ss_pred             --------CCEEEEeccccccCCCCcCCCCceEEEEcCcc------cHHHHHHHHccccccCeEEEE
Q 022962          171 --------LNVQIVRGRAETLGKDVSFREQYDVAVARAVA------EMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       171 --------~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~------~~~~ll~~~~~~LkpgG~l~~  223 (289)
                              ..+.+...+..+...  ...++||+|+|+.+-      ....+++.+.+.|+|||+|++
T Consensus       105 ~~~~~~~~~~v~~~~~~~~~~~~--~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l  169 (193)
T d1af7a2         105 VRVRQELANYVEFSSVNLLEKQY--NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  169 (193)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSC--CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             eehHHHHHHHHHHhhhhcccccc--CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                    113344444333211  123689999999643      357999999999999999875

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.1e-06  Score=76.05  Aligned_cols=72  Identities=22%  Similarity=0.190  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++..||+||+|.|.++..|+..  +.+|++||+|+.+++.+++....... .|++++++|+.....     ..++.|++|
T Consensus        21 ~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~-----~~~~~vV~N   93 (278)
T d1zq9a1          21 PTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-----PFFDTCVAN   93 (278)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-----CCCSEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh-----hhhhhhhcc
Confidence            4789999999999999999987  46999999999999999987766543 479999999988754     246788998

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=3.1e-07  Score=74.65  Aligned_cols=93  Identities=14%  Similarity=0.201  Sum_probs=68.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-----CcCCCCc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-----VSFREQY  193 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-----~~~~~~f  193 (289)
                      +++.+||||||++|.|+..++.. .+...|+++|+.+.           ..++++.++++|+.+....     .....+|
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSKV   89 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCcce
Confidence            35789999999999999987765 45689999998762           1356899999999763211     0123579


Q ss_pred             eEEEEcCcc---------------cHHHHHHHHccccccCeEEEE
Q 022962          194 DVAVARAVA---------------EMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       194 D~V~sn~~~---------------~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      |+|+|..-.               =....+.-+.++|++||.|++
T Consensus        90 DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~  134 (180)
T d1ej0a_          90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV  134 (180)
T ss_dssp             EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEE
Confidence            999998311               124666778889999999996

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.53  E-value=3.8e-09  Score=90.49  Aligned_cols=73  Identities=16%  Similarity=0.097  Sum_probs=59.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .++.+|||||||+|.++..|+..  +.+|+|||+|+.+++.+++...  +..|++++++|+.++..+   ...++.|++|
T Consensus        28 ~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~~~~---~~~~~~vv~N  100 (245)
T d1yuba_          28 KETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFP---NKQRYKIVGN  100 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCC---CSSEEEEEEE
T ss_pred             CCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhh--hccchhhhhhhhhccccc---cceeeeEeee
Confidence            35789999999999999999987  5799999999999887766433  234899999999988654   2567888898

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.49  E-value=6.9e-07  Score=72.66  Aligned_cols=122  Identities=17%  Similarity=0.138  Sum_probs=89.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC--cCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV--SFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~--~~~~~fD~V~s  198 (289)
                      +++.++|..+|.|..+..+...  +++|+|+|.++.++..++..    ..+++.+++++..++....  ...+.+|.|++
T Consensus        18 ~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~   91 (182)
T d1wg8a2          18 PGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHLKRHLAALGVERVDGILA   91 (182)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHHHHHHHHcCCCccCEEEE
Confidence            5889999999999999888764  57999999999998887652    3457999998887753210  01257999998


Q ss_pred             c-------------CcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          199 R-------------AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       199 n-------------~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                      .             .+......|+.....|++||.+++..-. .. |-..+.+.+++.+++...-
T Consensus        92 DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh-s~-Ed~ivk~~~~e~~~k~i~k  154 (182)
T d1wg8a2          92 DLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH-SL-EDRVVKRFLRESGLKVLTK  154 (182)
T ss_dssp             ECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS-HH-HHHHHHHHHHHHCSEESCS
T ss_pred             EccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc-cc-hhHHHHHHHhhccceeccC
Confidence            6             1234566888999999999999976532 22 2234455667788765543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.37  E-value=4e-06  Score=76.66  Aligned_cols=147  Identities=10%  Similarity=0.003  Sum_probs=94.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-------------CCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP-------------DWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGK  185 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p-------------~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~  185 (289)
                      ++.+|+|-+||+|.+.+.+.....             ...++|+|+++.+...|+.+.--.|..  +..+.++|..+...
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~~  241 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  241 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhhc
Confidence            467999999999998877665321             135999999999999999988877753  35566777654332


Q ss_pred             CCcCCCCceEEEEcCc---------------------ccHHHHHHHHccccccCeEEEEEEcCCc---HHHHHHHHHHHH
Q 022962          186 DVSFREQYDVAVARAV---------------------AEMRILAEYCLPLVRVGGLFVAAKGHDP---QEEVKNSERAVQ  241 (289)
Q Consensus       186 ~~~~~~~fD~V~sn~~---------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~---~~ei~~~~~~l~  241 (289)
                          ..+||+|++|+.                     ...-.++..+...|++||++.+..+...   ...-..+.+.+-
T Consensus       242 ----~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll  317 (425)
T d2okca1         242 ----STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLL  317 (425)
T ss_dssp             ----SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHH
T ss_pred             ----ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHH
Confidence                368999999931                     0124588999999999999988764211   111122333333


Q ss_pred             HhCCeEeEEeeeec---CCCCCceEEEEEEecCC
Q 022962          242 LMGASLLQLCSVES---QSPFGQRTAVVCLKSRR  272 (289)
Q Consensus       242 ~~g~~~~~~~~~~~---~~~~~~r~lv~~~k~~~  272 (289)
                      +. +.+..+..+..   ....-.-.+++++|.++
T Consensus       318 ~~-~~i~aIi~LP~~~F~~t~v~t~Ilil~K~k~  350 (425)
T d2okca1         318 QD-FNLHTILRLPTGIFYAQGVKANVLFFSKGQP  350 (425)
T ss_dssp             HH-EEEEEEEECCSSSSSSTTCCEEEEEEEESSC
T ss_pred             Hh-cchhHhhcCCcccccCCCCCeEEEEEECCCC
Confidence            33 33455544421   11123455777777654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=5.7e-06  Score=70.45  Aligned_cols=75  Identities=13%  Similarity=-0.024  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC--CCCceEEEE
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF--REQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~--~~~fD~V~s  198 (289)
                      ++..||+||||+|.++..|+..  +.+|++||+|+.+++.+++...  ..+|++++++|+.++......  .+.--.|++
T Consensus        21 ~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~~~~ii~~D~l~~~~~~~~~~~~~~~~vvg   96 (252)
T d1qyra_          21 KGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPF--LGPKLTIYQQDAMTFNFGELAEKMGQPLRVFG   96 (252)
T ss_dssp             TTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTT--TGGGEEEECSCGGGCCHHHHHHHHTSCEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhh--hccchhHHhhhhhhhcccccccccCCCeEEEe
Confidence            4789999999999999999865  5799999999999998877322  224799999999886432100  012246778


Q ss_pred             c
Q 022962          199 R  199 (289)
Q Consensus       199 n  199 (289)
                      |
T Consensus        97 N   97 (252)
T d1qyra_          97 N   97 (252)
T ss_dssp             E
T ss_pred             c
Confidence            8

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.12  E-value=1.3e-06  Score=73.64  Aligned_cols=99  Identities=13%  Similarity=0.130  Sum_probs=65.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHH----CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC-CCCceEE
Q 022962          122 NLKLVDVGTGAGLPGLVLAIA----CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVA  196 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~----~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~-~~~fD~V  196 (289)
                      +.+||+||++.|.-++.+|..    .+.++|+++|+++......     ....++|+++++|..+....... ...+|+|
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlI  155 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASDMENITLHQGDCSDLTTFEHLREMAHPLI  155 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hccccceeeeecccccHHHHHHHHhcCCCEE
Confidence            679999999999887777643    2578999999987543222     11235899999987654321111 3468888


Q ss_pred             EEcCcccHHH-HHH-HHccccccCeEEEEEE
Q 022962          197 VARAVAEMRI-LAE-YCLPLVRVGGLFVAAK  225 (289)
Q Consensus       197 ~sn~~~~~~~-ll~-~~~~~LkpgG~l~~~~  225 (289)
                      +..+-..... +.. ...++|++||+++++.
T Consensus       156 fID~~H~~~~v~~~~~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         156 FIDNAHANTFNIMKWAVDHLLEEGDYFIIED  186 (232)
T ss_dssp             EEESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             EEcCCcchHHHHHHHHHhcccCcCCEEEEEc
Confidence            8764322111 111 2357999999999864

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.05  E-value=1.6e-05  Score=66.98  Aligned_cols=124  Identities=15%  Similarity=0.031  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-cccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      ++.+|+|||||.|.++-.++...+...|.|+|+--...+ .......++.+-+++... |+..++     ++.+|+|+|.
T Consensus        66 ~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~~ni~~~~~~~dv~~l~-----~~~~D~vlcD  139 (257)
T d2p41a1          66 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQSGVDVFFIP-----PERCDTLLCD  139 (257)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEECSCCTTTSC-----CCCCSEEEEC
T ss_pred             CCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCccccccccccccchhhhhHHhcC-----CCcCCEEEee
Confidence            467999999999999999887655678888887311000 000001111111344322 332222     3689999997


Q ss_pred             C--------cc--cHHHHHHHHccccccCeEEEEEE-cCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          200 A--------VA--EMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       200 ~--------~~--~~~~ll~~~~~~LkpgG~l~~~~-g~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                      .        +.  ..-.+++-+.++|+|||.|++=. .+...+.++.+...-...|-.+++.
T Consensus       140 m~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fgg~lVR~  201 (257)
T d2p41a1         140 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGALVRN  201 (257)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECC
T ss_pred             CCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhCCeeEcC
Confidence            3        11  12367888889999999987632 2223333333333334566665554

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=3.3e-05  Score=72.28  Aligned_cols=149  Identities=8%  Similarity=-0.039  Sum_probs=88.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC------------------CCEEEEEeCChHHHHHHHHHHHHcCCCC-----EEEEe
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACP------------------DWKVTLLESMNKRCVFLEHAVSLTQLLN-----VQIVR  177 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p------------------~~~V~~iD~s~~~l~~a~~~~~~~~l~n-----i~~~~  177 (289)
                      ++.+|+|-+||+|.+.+.......                  ...++|+|+++.+...|+.|.--.+...     -.+..
T Consensus       164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~  243 (524)
T d2ar0a1         164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  243 (524)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhh
Confidence            477999999999998776554311                  1258999999999999998887665421     11222


Q ss_pred             ccccccCCCCcCCCCceEEEEcCc-----------------c-cHHHHHHHHccccccCeEEEEEEcCC----cHHHHHH
Q 022962          178 GRAETLGKDVSFREQYDVAVARAV-----------------A-EMRILAEYCLPLVRVGGLFVAAKGHD----PQEEVKN  235 (289)
Q Consensus       178 ~d~~~~~~~~~~~~~fD~V~sn~~-----------------~-~~~~ll~~~~~~LkpgG~l~~~~g~~----~~~ei~~  235 (289)
                      ++...-..  ....+||+|++|+.                 . .--.+++.+.+.|++||++.++.+..    ...+ ..
T Consensus       244 ~~~l~~d~--~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~-~~  320 (524)
T d2ar0a1         244 GNTLGSDG--ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TD  320 (524)
T ss_dssp             SCTTSHHH--HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHH-HH
T ss_pred             hhhhhhcc--cccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhh-HH
Confidence            22221110  11257999999941                 0 12358899999999999998876421    1111 22


Q ss_pred             HHHHHHHhCCeEeEEeeeec---CCCCCceEEEEEEecCCC
Q 022962          236 SERAVQLMGASLLQLCSVES---QSPFGQRTAVVCLKSRRT  273 (289)
Q Consensus       236 ~~~~l~~~g~~~~~~~~~~~---~~~~~~r~lv~~~k~~~~  273 (289)
                      +.+.+-+.+ .+..+..+..   ....-.-.+++++|.++.
T Consensus       321 iR~~Ll~~~-~i~aII~LP~~~F~~t~i~t~Il~l~K~k~~  360 (524)
T d2ar0a1         321 IRRDLMDKC-HLHTILRLPTGIFYAQGVKTNVLFFTKGTVA  360 (524)
T ss_dssp             HHHHHHHHE-EEEEEEECCSSCSSSCSCCEEEEEEEEBCSS
T ss_pred             HHHHHHHcC-CceEEEECCCCcCCCCCCCeEEEEEECCCCC
Confidence            333333333 4555554421   111224567777776543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=1.3e-05  Score=63.55  Aligned_cols=97  Identities=18%  Similarity=0.172  Sum_probs=62.0

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          120 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       120 ~~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      +++++||-+|+| .|..++.+|+.. +++|+++|.+++.++.+++    +|.+.+ +...+-.+...  ...+.||+|+.
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~----lGa~~~-i~~~~~~~~~~--~~~~~~d~vi~   97 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK----MGADHY-IATLEEGDWGE--KYFDTFDLIVV   97 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSEE-EEGGGTSCHHH--HSCSCEEEEEE
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhc----cCCcEE-eeccchHHHHH--hhhcccceEEE
Confidence            458999999987 556666667664 6799999999998877655    565422 21112112111  12367999886


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEE
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..-......+..+.+.|+|+|++++.
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          98 CASSLTDIDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             CCSCSTTCCTTTGGGGEEEEEEEEEC
T ss_pred             EecCCccchHHHHHHHhhccceEEEe
Confidence            42221112245678899999999864

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.59  E-value=5.7e-05  Score=63.87  Aligned_cols=75  Identities=20%  Similarity=0.219  Sum_probs=61.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC---------CCCEEEEeccccccCCCCcCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ---------LLNVQIVRGRAETLGKDVSFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~---------l~ni~~~~~d~~~~~~~~~~~~~  192 (289)
                      ..+|||.-||.|.-++.+|..  +++|+++|.++.....++++.++..         ..|++++++|..++-..  ..++
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~--~~~~  164 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD--ITPR  164 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT--CSSC
T ss_pred             CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc--cCCC
Confidence            348999999999999999987  6899999999999888887665542         13699999998876442  2467


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      ||+|+...
T Consensus       165 ~DvIYlDP  172 (250)
T d2oyra1         165 PQVVYLDP  172 (250)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            99999985

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.52  E-value=2.7e-05  Score=63.45  Aligned_cols=100  Identities=14%  Similarity=0.054  Sum_probs=67.0

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCce
Q 022962          119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYD  194 (289)
Q Consensus       119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD  194 (289)
                      ++++.+||.+|||. |..+..+|+.....+|+++|.+++.++.|++    +|.+  .++...-+++..   .......+|
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~----~Ga~--~~~~~~~~~~~~~i~~~t~g~g~D   96 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGFE--IADLSLDTPLHEQIAALLGEPEVD   96 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCE--EEETTSSSCHHHHHHHHHSSSCEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh----cccc--EEEeCCCcCHHHHHHHHhCCCCcE
Confidence            44689999999998 6677777887777899999999999887765    4542  222211111100   001124689


Q ss_pred             EEEEc-Cc------------ccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVAR-AV------------AEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn-~~------------~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +++-. ..            ......++.+.+.++|||++.+.
T Consensus        97 ~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          97 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            98843 11            12357889999999999999864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.49  E-value=3.1e-05  Score=61.87  Aligned_cols=98  Identities=14%  Similarity=0.116  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCce
Q 022962          119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYD  194 (289)
Q Consensus       119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD  194 (289)
                      ++++.+||=+|||. |..++.+|+.....+|+++|.+++.++.+++    +|.+  .++..+-++...   .......||
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~--~~i~~~~~~~~~~v~~~t~g~G~D   98 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGAT--DILNYKNGHIEDQVMKLTNGKGVD   98 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCS--EEECGGGSCHHHHHHHHTTTSCEE
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCcc--ccccccchhHHHHHHHHhhccCcc
Confidence            44688999999986 7777888877655689999999998887764    5643  223222121110   001124599


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+-..-.  ...++++.+.++|+|++++.
T Consensus        99 ~vid~~g~--~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          99 RVIMAGGG--SETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             EEEECSSC--TTHHHHHHHHEEEEEEEEEC
T ss_pred             eEEEccCC--HHHHHHHHHHHhcCCEEEEE
Confidence            98865322  13456666889999999874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=0.00016  Score=57.74  Aligned_cols=98  Identities=20%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec--cccccC---CCCcCCCCc
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG--RAETLG---KDVSFREQY  193 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~--d~~~~~---~~~~~~~~f  193 (289)
                      ++|.+||-+|||+ |..++.+|+.....+|+++|.+++.++.+++    +|.+.+ +-..  +..+..   ........+
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~v-i~~~~~~~~~~~~~i~~~~~~~g~  101 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGADLT-LNRRETSVEERRKAIMDITHGRGA  101 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCSEE-EETTTSCHHHHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCCccchhheeccccccccccccccccccccccccc----ccceEE-EeccccchHHHHHHHHHhhCCCCc
Confidence            4589999999874 6667778877755589999999998887755    565321 2111  111110   000112469


Q ss_pred             eEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          194 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       194 D~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+|+-..-.  +..++.+.+.|++||++++.
T Consensus       102 Dvvid~vG~--~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         102 DFILEATGD--SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             EEEEECSSC--TTHHHHHHHHEEEEEEEEEC
T ss_pred             eEEeecCCc--hhHHHHHHHHhcCCCEEEEE
Confidence            998854322  23566677899999998764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.17  E-value=0.00062  Score=53.30  Aligned_cols=97  Identities=15%  Similarity=0.162  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccc-ccC---C--CCcCCCC
Q 022962          120 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAE-TLG---K--DVSFREQ  192 (289)
Q Consensus       120 ~~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~-~~~---~--~~~~~~~  192 (289)
                      +++.+||-+||| .|.+++.+|+.. +++|+++|.+++.++.|++    +|.+ ..+...+.. +..   .  .....+.
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~----~ga~-~~~~~~~~~~~~~~~~~~~~~~~g~g   98 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKN----CGAD-VTLVVDPAKEEESSIIERIRSAIGDL   98 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCS-EEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred             CCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHH----cCCc-EEEeccccccccchhhhhhhcccccC
Confidence            358899999988 455556667665 5799999999998887766    4543 222221111 100   0  0011356


Q ss_pred             ceEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          193 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       193 fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+|+-..-.  +..++.+.++++++|++++.
T Consensus        99 ~D~vid~~g~--~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          99 PNVTIDCSGN--EKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             CSEEEECSCC--HHHHHHHHHHSCTTCEEEEC
T ss_pred             CceeeecCCC--hHHHHHHHHHHhcCCceEEE
Confidence            8998854322  34566777899999998864

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.0026  Score=54.75  Aligned_cols=122  Identities=11%  Similarity=0.098  Sum_probs=73.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~-V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|+|+-||.|.+++.+....-..+ |.++|+++.+++..+.|.     .+..++.+|+.++.........+|+++...
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~~~~Dll~ggp   76 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence            46899999999998877765522224 679999999888877752     245667889887654211113689999762


Q ss_pred             -------------cc-cH----HHHHHHHccc-cccCeEEEEEE--cCCcHHHHHHHHHHHHHhCCeEeE
Q 022962          201 -------------VA-EM----RILAEYCLPL-VRVGGLFVAAK--GHDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       201 -------------~~-~~----~~ll~~~~~~-LkpgG~l~~~~--g~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                                   .. +.    ..+++.+..+ -+|. .++++-  +.........+.+.|+..|+.+..
T Consensus        77 PCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~  145 (343)
T d1g55a_          77 PCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQYQE  145 (343)
T ss_dssp             C------------------CHHHHHHHHGGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred             ccccccccccccccccccccccchhhhhHhhhcCCCc-eeeeeccCCcccchhhHHHHhhhhccccccce
Confidence                         11 11    2233333221 1565 455553  222223345567788899987643

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.07  E-value=0.00028  Score=56.11  Aligned_cols=98  Identities=9%  Similarity=0.026  Sum_probs=66.2

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cC---CCCcCCCCc
Q 022962          119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LG---KDVSFREQY  193 (289)
Q Consensus       119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~---~~~~~~~~f  193 (289)
                      ++++++||=+|||+ |..++.+|+......|+++|++++.++.+++    +|.+.+  +...-.+ ..   ......+.+
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~~~--i~~~~~~~~~~~~~~~~~~~G~   99 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGATDC--LNPRELDKPVQDVITELTAGGV   99 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSEE--ECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCCcc--cCCccchhhhhhhHhhhhcCCC
Confidence            45689999999998 8888888988877799999999998766655    565422  2211111 00   000113568


Q ss_pred             eEEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962          194 DVAVARAVAEMRILAEYCLPLVRVG-GLFVAA  224 (289)
Q Consensus       194 D~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~  224 (289)
                      |+|+-..-.  +..++++.+.+++| |++++.
T Consensus       100 d~vie~~G~--~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2         100 DYSLDCAGT--AQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             SEEEESSCC--HHHHHHHHHTBCTTTCEEEEC
T ss_pred             cEEEEeccc--chHHHHHHHHhhcCCeEEEec
Confidence            999854322  34677888899996 999864

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00023  Score=56.28  Aligned_cols=96  Identities=15%  Similarity=0.122  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCc
Q 022962          119 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQY  193 (289)
Q Consensus       119 ~~~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~f  193 (289)
                      ++++.+||-.|+  |.|..++.+|+.. +++|++++.+++..+.++    ++|.+.+  +..+-.++..   .....+.|
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~----~~Ga~~v--i~~~~~~~~~~i~~~t~~~g~   98 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVL----QNGAHEV--FNHREVNYIDKIKKYVGEKGI   98 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCSEE--EETTSTTHHHHHHHHHCTTCE
T ss_pred             CCCCCEEEEEecccccccccccccccc-Cccccccccccccccccc----ccCcccc--cccccccHHHHhhhhhccCCc
Confidence            346889999996  3556667778775 579999999988766665    4676533  2211111110   00113579


Q ss_pred             eEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          194 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       194 D~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+|+...-.   ..++.+.++|+|+|+++.+
T Consensus        99 d~v~d~~g~---~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          99 DIIIEMLAN---VNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             EEEEESCHH---HHHHHHHHHEEEEEEEEEC
T ss_pred             eEEeecccH---HHHHHHHhccCCCCEEEEE
Confidence            999976432   3577778899999999864

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.0006  Score=59.52  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccccc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL  183 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~  183 (289)
                      +.+|||||.|.|.++..|.......+|++||+++..++.+++...   -+|++++++|+..+
T Consensus        44 ~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          44 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDW  102 (322)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCH
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhhc
Confidence            678999999999999998865333599999999999998887532   24799999998754

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.91  E-value=0.0003  Score=59.26  Aligned_cols=103  Identities=12%  Similarity=-0.055  Sum_probs=72.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC----C------------------------------------CCEEEEEeCChHHHHH
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC----P------------------------------------DWKVTLLESMNKRCVF  160 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~----p------------------------------------~~~V~~iD~s~~~l~~  160 (289)
                      .+..++|-.||||.+.+..|...    |                                    ..+++|.|+++++++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            35679999999999999877631    1                                    1246799999999998


Q ss_pred             H---HHHHHHcCCCC-EEEEeccccccCCCC--cCCCCceEEEEcC-----------c--ccHHHHHHHHccccccCeEE
Q 022962          161 L---EHAVSLTQLLN-VQIVRGRAETLGKDV--SFREQYDVAVARA-----------V--AEMRILAEYCLPLVRVGGLF  221 (289)
Q Consensus       161 a---~~~~~~~~l~n-i~~~~~d~~~~~~~~--~~~~~fD~V~sn~-----------~--~~~~~ll~~~~~~LkpgG~l  221 (289)
                      |   ++|++..|+.. |.+.+.|+.+.....  ..+...++|++|.           .  ..+..+...+.+.+.....+
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~  209 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  209 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcEE
Confidence            8   46888889864 899999987643210  1135679999993           1  23667777777777544444


Q ss_pred             EE
Q 022962          222 VA  223 (289)
Q Consensus       222 ~~  223 (289)
                      ++
T Consensus       210 ~i  211 (249)
T d1o9ga_         210 AV  211 (249)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.81  E-value=0.0006  Score=53.42  Aligned_cols=97  Identities=10%  Similarity=0.078  Sum_probs=63.3

Q ss_pred             CCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCce
Q 022962          120 NSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYD  194 (289)
Q Consensus       120 ~~~~~VLDiGcG--~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD  194 (289)
                      +++.+||=+|+|  .|..++.+++.....+|+++|.+++..+.+++    +|.+  .++..+-++...   .....+.||
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~~~~~~~~~~~d   99 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD--YVINASMQDPLAEIRRITESKGVD   99 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc--eeeccCCcCHHHHHHHHhhcccch
Confidence            458899999974  34445556666666799999999998887765    4653  223322222110   001235699


Q ss_pred             EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +|+-..-.  ...++.+.+.++|||++++.
T Consensus       100 ~vid~~g~--~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2         100 AVIDLNNS--EKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             EEEESCCC--HHHHTTGGGGEEEEEEEEEC
T ss_pred             hhhccccc--chHHHhhhhhcccCCEEEEe
Confidence            98865432  45667788999999999865

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.80  E-value=0.0015  Score=51.26  Aligned_cols=97  Identities=14%  Similarity=0.112  Sum_probs=62.4

Q ss_pred             CCCCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC--CCCcCCCCceEE
Q 022962          120 NSNLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG--KDVSFREQYDVA  196 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~-~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~--~~~~~~~~fD~V  196 (289)
                      +++.+||=+|+|+.. .++.+++......|+++|.+++.++.+++    +|.+  .++..+-+...  ......+.+|+|
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~--~~i~~~~~~~~~~~~~~~~~g~d~v  104 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD--HVVDARRDPVKQVMELTRGRGVNVA  104 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS--EEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc--eeecCcccHHHHHHHhhCCCCceEE
Confidence            458899999987543 33556666667799999999988877765    4543  23332211111  000112469998


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +-..-.  ...++.+.+.|++||++++.
T Consensus       105 id~~g~--~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         105 MDFVGS--QATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             EESSCC--HHHHHHGGGGEEEEEEEEEC
T ss_pred             EEecCc--chHHHHHHHHHhCCCEEEEE
Confidence            865432  33678888999999999864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0019  Score=50.55  Aligned_cols=99  Identities=16%  Similarity=0.153  Sum_probs=61.8

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEe-ccccccCC--CCcCCCCceE
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLGK--DVSFREQYDV  195 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~-~d~~~~~~--~~~~~~~fD~  195 (289)
                      +++.+|+=+|||+ |..++.+++.....+|+++|.+++.++.|++    +|.+.+.... .+..+...  .......+|+
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGADLVLQISKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCcccccccccccccccccccccCCCCceE
Confidence            3588999999864 3444556666665699999999998887765    5654222111 11111100  0012356899


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-..-.  +..++.+.+.+++||++++.
T Consensus       101 vid~~G~--~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2         101 TIECTGA--EASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             EEECSCC--HHHHHHHHHHSCTTCEEEEC
T ss_pred             EEeccCC--chhHHHHHHHhcCCCEEEEE
Confidence            8854322  34677778899999999874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.60  E-value=0.0013  Score=51.77  Aligned_cols=98  Identities=12%  Similarity=0.164  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceE
Q 022962          119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDV  195 (289)
Q Consensus       119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~  195 (289)
                      .+++.+||=+|||. |..++.+|+......|+.+|.+++.++.+++    +|.+  .++..+-++....  ...++.||+
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~--~~i~~~~~~~~~~i~~~t~gg~D~   99 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT--HVINSKTQDPVAAIKEITDGGVNF   99 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCCe--EEEeCCCcCHHHHHHHHcCCCCcE
Confidence            45688999999863 2234455666666788999999998887765    4653  2333332222110  011357999


Q ss_pred             EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          196 AVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+-..-.  ...++.+.++++|+|++++.
T Consensus       100 vid~~G~--~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2         100 ALESTGS--PEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             EEECSCC--HHHHHHHHHTEEEEEEEEEC
T ss_pred             EEEcCCc--HHHHHHHHhcccCceEEEEE
Confidence            8854322  34566777899999999864

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.54  E-value=0.077  Score=44.49  Aligned_cols=115  Identities=16%  Similarity=0.206  Sum_probs=74.9

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC--
Q 022962          124 KLVDVGTGAGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--  200 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~p~~~-V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--  200 (289)
                      +|+|+-||.|.+++.+.+.  +.+ +.++|+++.+++..+.|.   +   -.++++|+.++.... . ...|+++...  
T Consensus         2 k~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~---~---~~~~~~Di~~~~~~~-~-~~~dll~~g~PC   71 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH---S---AKLIKGDISKISSDE-F-PKCDGIIGGPPC   71 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC---C---SEEEESCTTTSCGGG-S-CCCSEEEECCCC
T ss_pred             eEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC---C---CCCccCChhhCCHhH-c-ccccEEeecccc
Confidence            6999999999988877665  445 559999999888777652   1   345789999885532 2 4689999761  


Q ss_pred             -----------cccH-----HHHHHHHccccccCeEEEEEE--c---CCcHHHHHHHHHHHHHhCCeEeEE
Q 022962          201 -----------VAEM-----RILAEYCLPLVRVGGLFVAAK--G---HDPQEEVKNSERAVQLMGASLLQL  250 (289)
Q Consensus       201 -----------~~~~-----~~ll~~~~~~LkpgG~l~~~~--g---~~~~~ei~~~~~~l~~~g~~~~~~  250 (289)
                                 ..+.     ..+++ +...++|. .++++-  +   ......+..+...+...|+.+...
T Consensus        72 q~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~~Pk-~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~  140 (324)
T d1dcta_          72 QSWSEGGSLRGIDDPRGKLFYEYIR-ILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHII  140 (324)
T ss_dssp             TTTSSSSCCCCSSSHHHHHHHHHHH-HHHHHCCS-EEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEE
T ss_pred             cccccccccccccccccchHHHHHH-HHHhhCCc-eeeccccccccccccchhhHHHHhHHhhCCCcccee
Confidence                       1111     22222 33456786 444443  1   234556677777888888875443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.31  E-value=0.0017  Score=51.08  Aligned_cols=92  Identities=16%  Similarity=0.093  Sum_probs=59.0

Q ss_pred             CCCCeEEEEcC-CC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          120 NSNLKLVDVGT-GA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       120 ~~~~~VLDiGc-G~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      +++++||=.|. |. |..++.+|+.. +++|++++.+++..+.+++    +|.+.+ +-..+.....   ...+.+|+|+
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~---~~~~g~D~v~   96 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLA----LGAEEA-ATYAEVPERA---KAWGGLDLVL   96 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHH----TTCSEE-EEGGGHHHHH---HHTTSEEEEE
T ss_pred             CCCCEEEEEeccccchhhhhhhhccc-ccccccccccccccccccc----ccccee-eehhhhhhhh---hccccccccc
Confidence            35889999884 32 55666678776 5799999999987766654    676533 2112211100   1135699998


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      -..-.    .++.+.+.|+++|+++.+
T Consensus        97 d~~G~----~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          97 EVRGK----EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             ECSCT----THHHHHTTEEEEEEEEEC
T ss_pred             cccch----hHHHHHHHHhcCCcEEEE
Confidence            53222    246677899999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.23  E-value=0.0067  Score=46.86  Aligned_cols=95  Identities=15%  Similarity=0.101  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceEE
Q 022962          120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDVA  196 (289)
Q Consensus       120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~V  196 (289)
                      +++++||=+|+|+ |..++.+|+.. +.+|+++|.+++.++.+++    +|.+.  ++..+-++....  ....+.+|.|
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~----~Ga~~--~i~~~~~~~~~~~~~~~~g~~~~i   98 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARK----LGASL--TVNARQEDPVEAIQRDIGGAHGVL   98 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSE--EEETTTSCHHHHHHHHHSSEEEEE
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhc----cCccc--cccccchhHHHHHHHhhcCCcccc
Confidence            3588999898864 44445566665 5899999999998877654    56542  232222221100  0012334444


Q ss_pred             EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          197 VARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ++...   ...++.+.+.|+++|++++.
T Consensus        99 ~~~~~---~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          99 VTAVS---NSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             ECCSC---HHHHHHHHTTEEEEEEEEEC
T ss_pred             ccccc---chHHHHHHHHhcCCcEEEEE
Confidence            44433   24567788999999999864

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.15  E-value=0.14  Score=43.10  Aligned_cols=116  Identities=14%  Similarity=0.090  Sum_probs=75.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~p~~~-V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      .+.+|+|+-||.|.+++.|...  +.+ |.++|+++.+++..+.|..     +  ..++|+.++....  -..+|+++..
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~-----~--~~~~Di~~~~~~~--~~~~Dll~gg   78 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFG-----E--KPEGDITQVNEKT--IPDHDILCAG   78 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHS-----C--CCBSCGGGSCGGG--SCCCSEEEEE
T ss_pred             CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCC-----C--CCcCchhcCchhh--cceeeeeecc
Confidence            3789999999999988877654  344 5779999999998888752     1  1357888875432  1468999976


Q ss_pred             C-------------cc-----cHHHHHHHHccccccCeEEEEEE--c---CCcHHHHHHHHHHHHHhCCeEeE
Q 022962          200 A-------------VA-----EMRILAEYCLPLVRVGGLFVAAK--G---HDPQEEVKNSERAVQLMGASLLQ  249 (289)
Q Consensus       200 ~-------------~~-----~~~~ll~~~~~~LkpgG~l~~~~--g---~~~~~ei~~~~~~l~~~g~~~~~  249 (289)
                      .             ..     -+..+++. .+.++|. .++++-  |   ......+..+.+.++..|+.+..
T Consensus        79 pPCq~fS~ag~~~g~~d~r~~l~~~~~~~-i~~~kP~-~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~  149 (327)
T d2c7pa1          79 FPCQAFSISGKQKGFEDSRGTLFFDIARI-VREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA  149 (327)
T ss_dssp             CCCTTTCTTSCCCGGGSTTSCHHHHHHHH-HHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred             cccchhhhhhhhcCCcccchhHHHHHHHH-HhccCCc-EEecccchhhhhhccchhhHHhhhHHHhcCCccee
Confidence            1             11     12333332 2456775 445553  2   23445567777888899986543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.006  Score=47.39  Aligned_cols=94  Identities=16%  Similarity=0.156  Sum_probs=59.0

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962          119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  197 (289)
Q Consensus       119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~  197 (289)
                      ++++++||=+|||+ |.+++.+|+.. +++++++|.+++..+.++    ++|.+.  ++...-.+...  ...+.+|+++
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~----~lGad~--~i~~~~~~~~~--~~~~~~D~vi   98 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAK----ALGADE--VVNSRNADEMA--AHLKSFDFIL   98 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHH----HHTCSE--EEETTCHHHHH--TTTTCEEEEE
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHh----ccCCcE--EEECchhhHHH--HhcCCCceee
Confidence            34688999999864 45556667665 578889999998776655    456542  22222111111  1125799988


Q ss_pred             EcC-cccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARA-VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~-~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      -.. ...   .++.+.++++++|++++.
T Consensus        99 d~~g~~~---~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          99 NTVAAPH---NLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             ECCSSCC---CHHHHHTTEEEEEEEEEC
T ss_pred             eeeecch---hHHHHHHHHhcCCEEEEe
Confidence            542 221   234556799999999875

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.94  E-value=0.0041  Score=49.02  Aligned_cols=99  Identities=6%  Similarity=-0.066  Sum_probs=58.7

Q ss_pred             CCCCCeEEEEcCCCC-hHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEe-ccccccC---CCCcCCCCc
Q 022962          119 CNSNLKLVDVGTGAG-LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLG---KDVSFREQY  193 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G-~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~-~d~~~~~---~~~~~~~~f  193 (289)
                      ++++++|+=+|||.. ..++.+++.....+|+++|.+++.++.|++    +|.+.  ++. .+-.+..   ........+
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~----~GA~~--~in~~~~~~~~~~~~~~~~g~G~  100 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA----VGATE--CISPKDSTKPISEVLSEMTGNNV  100 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----HTCSE--EECGGGCSSCHHHHHHHHHTSCC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh----cCCcE--EECccccchHHHHHHHHhccccc
Confidence            456899999999853 344556666766899999999999888776    45532  222 1111100   000113568


Q ss_pred             eEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          194 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       194 D~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+++-.. .....+...+..+++.+|++++.
T Consensus       101 d~vi~~~-g~~~~~~~a~~~~~~~~G~~v~v  130 (176)
T d1d1ta2         101 GYTFEVI-GHLETMIDALASCHMNYGTSVVV  130 (176)
T ss_dssp             CEEEECS-CCHHHHHHHHTTSCTTTCEEEEC
T ss_pred             eEEEEeC-CchHHHHHHHHHhhcCCeEEEEE
Confidence            9777443 22233344445556667998864

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0057  Score=47.82  Aligned_cols=96  Identities=15%  Similarity=0.075  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCCC--ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC---CcCCCCc
Q 022962          119 CNSNLKLVDVGTGA--GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD---VSFREQY  193 (289)
Q Consensus       119 ~~~~~~VLDiGcG~--G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~---~~~~~~f  193 (289)
                      ++++++||=.|+|+  |..++.+|+.. +++|+++|.|++..+.+++    +|.+.  ++..+-+++...   ......+
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~----lGa~~--vi~~~~~d~~~~v~~~t~g~g~   98 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGAWQ--VINYREEDLVERLKEITGGKKV   98 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCSE--EEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHh----cCCeE--EEECCCCCHHHHHHHHhCCCCe
Confidence            34588999886665  55666777764 6899999999998877764    56542  232222222110   0113579


Q ss_pred             eEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          194 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       194 D~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+|+-..-.+   .++.+...++++|++++.
T Consensus        99 d~v~d~~g~~---~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2          99 RVVYDSVGRD---TWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             EEEEECSCGG---GHHHHHHTEEEEEEEEEC
T ss_pred             EEEEeCccHH---HHHHHHHHHhcCCeeeec
Confidence            9988654332   455667899999998764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.53  E-value=0.022  Score=43.82  Aligned_cols=101  Identities=13%  Similarity=0.039  Sum_probs=60.8

Q ss_pred             eEEEEcCCCChHHHHHHH----HCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          124 KLVDVGTGAGLPGLVLAI----ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~----~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +|+=||||  .+|-.+|+    .....+|+|+|.+++.++.+++    .+.  +.....+.....     ....|+|+..
T Consensus         3 ~I~IIG~G--~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~----~~~--~~~~~~~~~~~~-----~~~~dlIila   69 (171)
T d2g5ca2           3 NVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGI--IDEGTTSIAKVE-----DFSPDFVMLS   69 (171)
T ss_dssp             EEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTS--CSEEESCGGGGG-----GTCCSEEEEC
T ss_pred             EEEEEccC--HHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH----hhc--chhhhhhhhhhh-----cccccccccc
Confidence            46678875  55554443    3345799999999998877665    333  211222222221     1357998854


Q ss_pred             -CcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHH
Q 022962          200 -AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSER  238 (289)
Q Consensus       200 -~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~  238 (289)
                       .......+++++.+.++++-.++- .+......+..+.+
T Consensus        70 ~p~~~~~~vl~~l~~~~~~~~ii~d-~~s~k~~~~~~~~~  108 (171)
T d2g5ca2          70 SPVRTFREIAKKLSYILSEDATVTD-QGSVKGKLVYDLEN  108 (171)
T ss_dssp             SCHHHHHHHHHHHHHHSCTTCEEEE-CCSCCTHHHHHHHH
T ss_pred             CCchhhhhhhhhhhccccccccccc-cccccHHHHHHHHH
Confidence             566788899999999988876653 33333333333333

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.37  E-value=0.022  Score=43.59  Aligned_cols=96  Identities=18%  Similarity=0.048  Sum_probs=57.1

Q ss_pred             CCCCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-CcCCCCceEEE
Q 022962          120 NSNLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAV  197 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~-~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-~~~~~~fD~V~  197 (289)
                      +++++||=.|||+-. .++.+++. .+.+|+++|.+++.++++++    +|.+.+  +...-++.... ......+|.++
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~----~Ga~~~--~~~~~~~~~~~~~~~~~~~~~~v   98 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKE----LGADLV--VNPLKEDAAKFMKEKVGGVHAAV   98 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHH----TTCSEE--ECTTTSCHHHHHHHHHSSEEEEE
T ss_pred             CCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhh----cCccee--cccccchhhhhcccccCCCceEE
Confidence            358899999987644 33445555 45799999999998877655    565422  11111111000 00012344444


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..+..  ...++.+.+.|+|+|++++.
T Consensus        99 ~~~~~--~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          99 VTAVS--KPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             ESSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred             eecCC--HHHHHHHHHHhccCCceEec
Confidence            44433  45677888899999999874

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.36  E-value=0.0087  Score=46.92  Aligned_cols=97  Identities=11%  Similarity=-0.053  Sum_probs=57.4

Q ss_pred             CCCCCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-----cCCCCcCCCC
Q 022962          119 CNSNLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-----LGKDVSFREQ  192 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~-~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-----~~~~~~~~~~  192 (289)
                      ++++++||=+|||... .++.+++.....+|+++|++++.++.+++    +|.+.  ++...-.+     .... ..++.
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~~--~i~~~~~d~~~~~~~~~-~~~~G   97 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGATE--CLNPKDYDKPIYEVICE-KTNGG   97 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHHH-HTTSC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCcE--EEcCCCchhHHHHHHHH-hcCCC
Confidence            4568999999997533 33445666666799999999999887765    56542  22211111     1000 11246


Q ss_pred             ceEEEEcCcccHHHHHHHHcccc-ccCeEEEEE
Q 022962          193 YDVAVARAVAEMRILAEYCLPLV-RVGGLFVAA  224 (289)
Q Consensus       193 fD~V~sn~~~~~~~ll~~~~~~L-kpgG~l~~~  224 (289)
                      +|.|+-..-.  ...++.....+ +++|.+++.
T Consensus        98 ~d~vid~~g~--~~~~~~~~~~~~~~~G~~v~v  128 (174)
T d1p0fa2          98 VDYAVECAGR--IETMMNALQSTYCGSGVTVVL  128 (174)
T ss_dssp             BSEEEECSCC--HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CcEEEEcCCC--chHHHHHHHHHHHhcCceEEE
Confidence            8988865322  23444444445 556888763

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.29  E-value=0.037  Score=42.35  Aligned_cols=85  Identities=16%  Similarity=0.125  Sum_probs=54.9

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-C
Q 022962          124 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-A  200 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn-~  200 (289)
                      +|.=||+  |..|-.+|+..  .+.+|++.|.+++.++.+++    .+.-+  ....+++.+       ...|+|+.. .
T Consensus         2 kI~iIG~--G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~~~--~~~~~~~~~-------~~~DiIilavp   66 (165)
T d2f1ka2           2 KIGVVGL--GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQLVD--EAGQDLSLL-------QTAKIIFLCTP   66 (165)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTSCS--EEESCGGGG-------TTCSEEEECSC
T ss_pred             EEEEEee--cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhccc--eeeeecccc-------cccccccccCc
Confidence            4555666  55555555432  46899999999987665544    34321  222333332       457988854 4


Q ss_pred             cccHHHHHHHHccccccCeEEEE
Q 022962          201 VAEMRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       201 ~~~~~~ll~~~~~~LkpgG~l~~  223 (289)
                      ....+.+++++...++++-.++-
T Consensus        67 ~~~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          67 IQLILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             HHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             Hhhhhhhhhhhhhhcccccceee
Confidence            56778999999999988887654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.27  E-value=0.0065  Score=47.59  Aligned_cols=96  Identities=11%  Similarity=0.150  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCc
Q 022962          119 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQY  193 (289)
Q Consensus       119 ~~~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~f  193 (289)
                      ++++++||=.|.  |.|..++.+|+.. +++|++++.+++..+.++    +.|.+.+  +..+-+++..   .......|
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~----~~Ga~~v--i~~~~~~~~~~v~~~t~~~g~   95 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS----RLGVEYV--GDSRSVDFADEILELTDGYGV   95 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH----TTCCSEE--EETTCSTHHHHHHHHTTTCCE
T ss_pred             CCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccc----ccccccc--ccCCccCHHHHHHHHhCCCCE
Confidence            345889998773  3455666667664 579999988887776665    4566432  2211112111   00113579


Q ss_pred             eEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          194 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       194 D~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+|+...-.   ..++.+.++|+++|+++..
T Consensus        96 d~v~d~~g~---~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          96 DVVLNSLAG---EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             EEEEECCCT---HHHHHHHHTEEEEEEEEEC
T ss_pred             EEEEecccc---hHHHHHHHHhcCCCEEEEE
Confidence            999976432   3566677899999998864

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.79  E-value=0.029  Score=43.85  Aligned_cols=98  Identities=9%  Similarity=0.030  Sum_probs=62.4

Q ss_pred             CCCCCCeEEEEcCCCC--hHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC--CCCcCCCCc
Q 022962          118 SCNSNLKLVDVGTGAG--LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG--KDVSFREQY  193 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G--~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~--~~~~~~~~f  193 (289)
                      +++++++||=.|+|+|  ..++.+|+.. +++|++++.+++..+.+++    +|.+.+ +...+-....  ......+.+
T Consensus        26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~----~Ga~~v-i~~~~~~~~~~~~~~~~~~Gv   99 (182)
T d1v3va2          26 GVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQ----IGFDAA-FNYKTVNSLEEALKKASPDGY   99 (182)
T ss_dssp             CCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSEE-EETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHh----hhhhhh-cccccccHHHHHHHHhhcCCC
Confidence            3456899998888664  4555667665 5799999999988766655    465432 2222211110  000123569


Q ss_pred             eEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          194 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       194 D~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      |+|+-.. .  ...++.+.++|+++|+++.+
T Consensus       100 d~v~D~v-G--~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2         100 DCYFDNV-G--GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             EEEEESS-C--HHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeEEec-C--chhhhhhhhhccCCCeEEee
Confidence            9987543 2  34678889999999999864

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.61  E-value=0.057  Score=44.46  Aligned_cols=48  Identities=10%  Similarity=0.135  Sum_probs=40.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ  169 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~  169 (289)
                      .+|..|||--||||.-+++....  +-+.+|+|++++..+.|+++++...
T Consensus       206 ~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~~~  253 (279)
T d1eg2a_         206 HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQ  253 (279)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             CCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhh
Confidence            35889999999999977765554  6799999999999999999887653

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.54  E-value=0.028  Score=45.76  Aligned_cols=45  Identities=13%  Similarity=0.072  Sum_probs=37.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHH
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS  166 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~  166 (289)
                      .+|..|||-=||||.-+++.. .. +-+.+|+|++++.++.|+++++
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~-~~-~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAK-KL-GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHH-HT-TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHH-Hc-CCeEEEEeCCHHHHHHHHHHHc
Confidence            358899999999998766543 33 6799999999999999998765

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.44  E-value=0.024  Score=43.84  Aligned_cols=100  Identities=8%  Similarity=-0.033  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-cccc-cCC--CCcCCCCc
Q 022962          119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAET-LGK--DVSFREQY  193 (289)
Q Consensus       119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d~~~-~~~--~~~~~~~f  193 (289)
                      ++++++||=.|||. |..++.+|+......|+++|.+++..+.+++    +|.+.  ++.. +-.+ ...  .....+.+
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa~~--~i~~~~~~~~~~~~~~~~~~~g~   99 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGATE--CINPQDFSKPIQEVLIEMTDGGV   99 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCSE--EECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCCcE--EEeCCchhhHHHHHHHHHcCCCC
Confidence            45689999999872 2344445666666899999999998776654    56542  2211 1111 100  00112569


Q ss_pred             eEEEEcCcccHHHHHHHHccccccCeEEEEEEc
Q 022962          194 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       194 D~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      |+|+-..-.  ...++.+..++++||.+++..+
T Consensus       100 D~vid~~G~--~~~~~~~~~~~~~g~~~~~v~~  130 (176)
T d2fzwa2         100 DYSFECIGN--VKVMRAALEACHKGWGVSVVVG  130 (176)
T ss_dssp             SEEEECSCC--HHHHHHHHHTBCTTTCEEEECS
T ss_pred             cEeeecCCC--HHHHHHHHHhhcCCceeEEEEe
Confidence            999866422  3466777788999888766543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.40  E-value=0.039  Score=43.29  Aligned_cols=95  Identities=12%  Similarity=0.082  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCCCh--HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962          121 SNLKLVDVGTGAGL--PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  198 (289)
Q Consensus       121 ~~~~VLDiGcG~G~--~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s  198 (289)
                      ++++||=-|.+.|.  .++-+|+.. +++|+++-.+++..+.+++    +|.+.+--...+..+... ...++.||+|+=
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~----lGa~~vi~~~~~~~~~~~-~~~~~gvD~vid  104 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRV----LGAKEVLAREDVMAERIR-PLDKQRWAAAVD  104 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHH----TTCSEEEECC----------CCSCCEEEEEE
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHh----cccceeeecchhHHHHHH-HhhccCcCEEEE
Confidence            47889998876654  555667665 7899999999988877764    565432211111111111 012367999886


Q ss_pred             cCcccHHHHHHHHccccccCeEEEEE
Q 022962          199 RAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       199 n~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      +.-.+   .+....+.|++||+++.+
T Consensus       105 ~vgg~---~~~~~l~~l~~~Griv~~  127 (176)
T d1xa0a2         105 PVGGR---TLATVLSRMRYGGAVAVS  127 (176)
T ss_dssp             CSTTT---THHHHHHTEEEEEEEEEC
T ss_pred             cCCch---hHHHHHHHhCCCceEEEe
Confidence            64322   356666899999999864

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.07  E-value=0.17  Score=39.11  Aligned_cols=113  Identities=11%  Similarity=0.059  Sum_probs=67.2

Q ss_pred             eEEEEcCCC-ChHHHHHHHHCCCCEEEEE-eCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          124 KLVDVGTGA-GLPGLVLAIACPDWKVTLL-ESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       124 ~VLDiGcG~-G~~~l~la~~~p~~~V~~i-D~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +|.=||||. |.-=+......++.+|+|+ |.+++.   +++.++..+... .+ ...|++++-..    ...|+|+...
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~~ll~~----~~iD~v~I~t   74 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEK---AKAFATANNYPESTK-IHGSYESLLED----PEIDALYVPL   74 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHH---HHHHHHHTTCCTTCE-EESSHHHHHHC----TTCCEEEECC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccc---cccchhcccccccee-ecCcHHHhhhc----cccceeeecc
Confidence            567789985 2221222345678899986 888765   444456666543 33 34577765332    4689988653


Q ss_pred             c-ccHHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHhCCeE
Q 022962          201 V-AEMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGASL  247 (289)
Q Consensus       201 ~-~~~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~g~~~  247 (289)
                      . ...-.+   +..+|+.|=.++++++. ...+++.++.+..++.|..+
T Consensus        75 p~~~h~~~---~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~  120 (184)
T d1ydwa1          75 PTSLHVEW---AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  120 (184)
T ss_dssp             CGGGHHHH---HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             cchhhcch---hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence            2 222233   33456666677777653 45667777777777777654

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=94.02  E-value=0.062  Score=47.56  Aligned_cols=53  Identities=17%  Similarity=0.066  Sum_probs=44.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCChHHHHHHHHHHHHcCCC
Q 022962          119 CNSNLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLL  171 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~~~l~la~~~p~--~~V~~iD~s~~~l~~a~~~~~~~~l~  171 (289)
                      ++++..++|||+=.|..+..++...++  .+|+++|+++...+.+++|++.+...
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~  264 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT  264 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence            456889999999999988877765443  69999999999999999999887653

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=93.91  E-value=0.024  Score=47.66  Aligned_cols=46  Identities=20%  Similarity=0.062  Sum_probs=37.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH
Q 022962          120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL  167 (289)
Q Consensus       120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~  167 (289)
                      +++..|||.-||||.-+++ |... +-+.+|+|++++.++.|++....
T Consensus       249 ~~gdiVlDpF~GSGTT~~A-A~~l-gR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLV-AERE-SRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHH-HHHT-TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             cCCCEEEecCCCCcHHHHH-HHHc-CCcEEEEeCCHHHHHHHHHHHHh
Confidence            4589999999999987665 4343 67999999999999999876543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.67  E-value=0.022  Score=44.50  Aligned_cols=93  Identities=17%  Similarity=0.287  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          122 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       122 ~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +.+|+=||+|. |.-++..|... +++|+++|.+.+.++..+....    .++++...+-+.+....   ...|+|+..+
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~----~~~~~~~~~~~~l~~~~---~~aDivI~aa  103 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG----SRVELLYSNSAEIETAV---AEADLLIGAV  103 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG----GGSEEEECCHHHHHHHH---HTCSEEEECC
T ss_pred             CcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhc----ccceeehhhhhhHHHhh---ccCcEEEEee
Confidence            67999999994 66667777665 6899999999998877665432    24666665554443211   4689999874


Q ss_pred             cc----cHHHHHHHHccccccCeEEE
Q 022962          201 VA----EMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       201 ~~----~~~~ll~~~~~~LkpgG~l~  222 (289)
                      .-    .+.-+-+++.+.+|||..++
T Consensus       104 lipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         104 LVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             CCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             ecCCcccCeeecHHHHhhcCCCcEEE
Confidence            21    12223356667899999877

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.50  E-value=0.11  Score=38.01  Aligned_cols=87  Identities=14%  Similarity=0.171  Sum_probs=53.8

Q ss_pred             CCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEEEcCcc-cHH
Q 022962          130 TGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVARAVA-EMR  205 (289)
Q Consensus       130 cG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~sn~~~-~~~  205 (289)
                      ||.|.+|..+++..  .+.+|+.+|.+++.++.+++   ..   ++.++++|..+...-. ..-+.+|.+++-... ...
T Consensus         6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~---~~---~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~N   79 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA---EI---DALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   79 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HC---SSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhh---hh---hhhhccCcccchhhhhhcChhhhhhhcccCCcHHHH
Confidence            45589999998754  46799999999998776544   22   4678889987642110 011468888875322 222


Q ss_pred             HHHHHHccccccCeEEE
Q 022962          206 ILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       206 ~ll~~~~~~LkpgG~l~  222 (289)
                      .++....+.+.+.-.+.
T Consensus        80 ~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          80 LMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHcCCceEEE
Confidence            33333444566665443

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.23  Score=41.04  Aligned_cols=102  Identities=19%  Similarity=0.149  Sum_probs=71.4

Q ss_pred             CCeE-EEEcCCCChHHHHHHHHC---CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCC
Q 022962          122 NLKL-VDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFR  190 (289)
Q Consensus       122 ~~~V-LDiGcG~G~~~l~la~~~---p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~  190 (289)
                      |++| |==|+++| +|..+|+.+   .+.+|+.++.+++.++.+.+.++..+. ++.++..|+.+...-.       ..-
T Consensus         2 g~rVAlVTGas~G-IG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKG-IGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSH-HHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCH-HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            5566 44476666 577766543   367999999999999888887777665 6888999998753210       001


Q ss_pred             CCceEEEEcC-c-----------c-----------cHHHHHHHHccccccCeEEEEEE
Q 022962          191 EQYDVAVARA-V-----------A-----------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       191 ~~fD~V~sn~-~-----------~-----------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +..|+++.|+ +           .           ..-.+.+.+.+.|+++|+++...
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            4799999994 0           0           12356677888999999988654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=92.50  E-value=0.084  Score=40.55  Aligned_cols=101  Identities=8%  Similarity=-0.069  Sum_probs=58.6

Q ss_pred             CCCCCCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC-C---CCcCCCC
Q 022962          118 SCNSNLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG-K---DVSFREQ  192 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~-~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~-~---~~~~~~~  192 (289)
                      .++++++|+=+|+|.+. .++.++.......|+++|.+++.++.+++    +|.+  .++..+-++.. .   .......
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~----~GAd--~~in~~~~~~~~~~~~~~~~~~G   98 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT--DFVNPNDHSEPISQVLSKMTNGG   98 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC--EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH----cCCc--EEEcCCCcchhHHHHHHhhccCC
Confidence            34568999999999844 44445666677899999999998777654    6654  23322111100 0   0001246


Q ss_pred             ceEEEEcCcccHHHHHHHHccccccCeEEEEEEc
Q 022962          193 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKG  226 (289)
Q Consensus       193 fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g  226 (289)
                      +|+|+-..-.  ...+..+...+++||..++..+
T Consensus        99 ~d~vid~~G~--~~~~~~a~~~~~~g~~~~~~~g  130 (175)
T d1cdoa2          99 VDFSLECVGN--VGVMRNALESCLKGWGVSVLVG  130 (175)
T ss_dssp             BSEEEECSCC--HHHHHHHHHTBCTTTCEEEECS
T ss_pred             cceeeeecCC--HHHHHHHHHHhhCCCcceeEEE
Confidence            8998865432  2344555556666644444443

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.45  E-value=0.22  Score=38.70  Aligned_cols=95  Identities=12%  Similarity=0.085  Sum_probs=59.6

Q ss_pred             CCeEEEEc--CCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceEEE
Q 022962          122 NLKLVDVG--TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDVAV  197 (289)
Q Consensus       122 ~~~VLDiG--cG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~V~  197 (289)
                      +++||=-|  -|.|..++.+|+......|++++.+++....   .++.+|.+.  ++...-+++...  ...++.+|+|+
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~---l~~~~gad~--vi~~~~~~~~~~~~~~~~~GvDvv~  105 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLF---LTSELGFDA--AVNYKTGNVAEQLREACPGGVDVYF  105 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHH---HHHHSCCSE--EEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhh---hhhcccceE--EeeccchhHHHHHHHHhccCceEEE
Confidence            36898877  4667888999998876788888877655333   234566542  222222221100  01135699998


Q ss_pred             EcCcccHHHHHHHHccccccCeEEEEE
Q 022962          198 ARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       198 sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      -..-   ...++...+.|+++|+++.+
T Consensus       106 D~vG---g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         106 DNVG---GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             ESSC---HHHHHHHHTTEEEEEEEEEC
T ss_pred             ecCC---chhHHHHhhhccccccEEEe
Confidence            5432   24577888999999999863

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.34  E-value=0.16  Score=39.58  Aligned_cols=102  Identities=8%  Similarity=-0.022  Sum_probs=57.8

Q ss_pred             CCCCCeEEEEcCCC---ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEE-eccccccCCC-----CcC
Q 022962          119 CNSNLKLVDVGTGA---GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIV-RGRAETLGKD-----VSF  189 (289)
Q Consensus       119 ~~~~~~VLDiGcG~---G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~-~~d~~~~~~~-----~~~  189 (289)
                      ++++.+||=+..|+   |..++.+|+.. +++|+++=.+.+..+...+.++++|.+.+-.. ..+..++...     ...
T Consensus        26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~  104 (189)
T d1gu7a2          26 LTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQS  104 (189)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhc
Confidence            34577888874444   45666677775 67888875555455555556677787543211 1122211100     001


Q ss_pred             CCCceEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962          190 REQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       190 ~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ...+|+|+-. +.  ...++.+.+.|+++|+++.+
T Consensus       105 g~~vdvv~D~-vg--~~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2         105 GGEAKLALNC-VG--GKSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             TCCEEEEEES-SC--HHHHHHHHHTSCTTCEEEEC
T ss_pred             cCCceEEEEC-CC--cchhhhhhhhhcCCcEEEEE
Confidence            2468998843 22  22345667899999998864

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.71  E-value=0.28  Score=40.22  Aligned_cols=78  Identities=15%  Similarity=0.065  Sum_probs=58.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCC-------cCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV-------SFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~-------~~~~  191 (289)
                      ++.+|=-|+++|+ |..+|+.+  .+++|+++|.+++.++.+.+.++..+.. ++.++++|+.+-..-.       ..-+
T Consensus        10 ~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_          10 DRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             TCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            7899999988774 77777654  5789999999999998888877777654 5888899997632100       0014


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        89 ~iD~lVnnA   97 (257)
T d1xg5a_          89 GVDICINNA   97 (257)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEecc
Confidence            789999884

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.48  E-value=0.89  Score=36.70  Aligned_cols=101  Identities=17%  Similarity=0.100  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCC--ChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCC
Q 022962          122 NLKLVDVGTGA--GLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFR  190 (289)
Q Consensus       122 ~~~VLDiGcG~--G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~  190 (289)
                      ++++|=-|+++  | +|..+|+.+  .+++|+..|.+++..+.+.+.....+  +..+++.|+.+...-.       ..-
T Consensus         8 gK~alITGas~~~G-IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (256)
T d1ulua_           8 GKKALVMGVTNQRS-LGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKEAF   84 (256)
T ss_dssp             TCEEEEESCCCSSS-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCch-HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC--cccccccccCCHHHHHHHHHHHHHhc
Confidence            78999999865  5 566666543  47899999999988777777666554  4667888886532100       001


Q ss_pred             CCceEEEEcCc-----------c----------------cHHHHHHHHccccccCeEEEEEE
Q 022962          191 EQYDVAVARAV-----------A----------------EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       191 ~~fD~V~sn~~-----------~----------------~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      +..|+++.|+-           .                ..-.+.+.+.+.++.+|.++...
T Consensus        85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~is  146 (256)
T d1ulua_          85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT  146 (256)
T ss_dssp             SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred             CCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEe
Confidence            47899997730           0                12344566778889999988765

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.40  E-value=0.089  Score=41.30  Aligned_cols=76  Identities=11%  Similarity=0.002  Sum_probs=49.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +++||=.|+++| +|..+|+.+  .+++|+.++.+++.++.+.+......  ++.+...|+.+...-...-+..|+++.|
T Consensus        23 gK~vlItGasgG-IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~iDilin~   99 (191)
T d1luaa1          23 GKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--KVNVTAAETADDASRAEAVKGAHFVFTA   99 (191)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--TCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCEEEEECCCHH-HHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc--chhhhhhhcccHHHHHHHhcCcCeeeec
Confidence            889999998777 466666543  46899999999998887777665532  2333444444321110112568999988


Q ss_pred             C
Q 022962          200 A  200 (289)
Q Consensus       200 ~  200 (289)
                      +
T Consensus       100 A  100 (191)
T d1luaa1         100 G  100 (191)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.38  E-value=0.16  Score=38.48  Aligned_cols=110  Identities=12%  Similarity=0.144  Sum_probs=65.9

Q ss_pred             EEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC--
Q 022962          125 LVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--  200 (289)
Q Consensus       125 VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--  200 (289)
                      |-=||+  |..|..+|+.  ..+.+|++.|.+++.++.+++    .+   .. ...+..+..      ...|+|++.-  
T Consensus         3 IgiIGl--G~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~----~~---~~-~~~~~~e~~------~~~d~ii~~v~~   66 (161)
T d1vpda2           3 VGFIGL--GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA----AG---AE-TASTAKAIA------EQCDVIITMLPN   66 (161)
T ss_dssp             EEEECC--STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TT---CE-ECSSHHHHH------HHCSEEEECCSS
T ss_pred             EEEEeh--hHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH----hh---hh-hcccHHHHH------hCCCeEEEEcCC
Confidence            333555  5566666643  246799999999988766654    22   22 223333332      3579888762  


Q ss_pred             cccHHHHH---HHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          201 VAEMRILA---EYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 ~~~~~~ll---~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      ....+.++   ..+...+++|-.+ +..+....+...++.+.++..|...++..
T Consensus        67 ~~~v~~v~~~~~~~~~~~~~g~ii-id~sT~~p~~~~~~~~~~~~~g~~~vdap  119 (161)
T d1vpda2          67 SPHVKEVALGENGIIEGAKPGTVL-IDMSSIAPLASREISDALKAKGVEMLDAP  119 (161)
T ss_dssp             HHHHHHHHHSTTCHHHHCCTTCEE-EECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred             HHHHHHHHhCCcchhhccCCCCEE-EECCCCCHHHHHHHHHHHHHcCCceeccc
Confidence            23344444   3355566676554 44555555666777778888888777653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.37  Score=39.22  Aligned_cols=77  Identities=13%  Similarity=0.017  Sum_probs=58.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~  192 (289)
                      |..+|=-|+++|+ |..+|..+  .+++|+.+|.+++.++.+.+.++..+- ++.++..|+.+...-.       ...+.
T Consensus         7 Gkv~lITGas~GI-G~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~i~~~~g~   84 (244)
T d1yb1a_           7 GEIVLITGAGHGI-GRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEIGD   84 (244)
T ss_dssp             TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            7888888998885 66666543  478999999999999988888887764 6888899988753210       01256


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        85 idilinna   92 (244)
T d1yb1a_          85 VSILVNNA   92 (244)
T ss_dssp             CSEEEECC
T ss_pred             CceeEeec
Confidence            89999883

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=91.10  E-value=0.12  Score=41.69  Aligned_cols=75  Identities=9%  Similarity=-0.071  Sum_probs=49.9

Q ss_pred             EEEeccccccCCCCcCCCCceEEEEcCc------------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHH
Q 022962          174 QIVRGRAETLGKDVSFREQYDVAVARAV------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKN  235 (289)
Q Consensus       174 ~~~~~d~~~~~~~~~~~~~fD~V~sn~~------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~  235 (289)
                      +++++|..++-.. ..++++|+|++...                  ..+...++++.++|+|||.+++....   .....
T Consensus         6 ~i~~gDcle~l~~-lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~---~~~~~   81 (256)
T d1g60a_           6 KIHQMNCFDFLDQ-VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---FNCAF   81 (256)
T ss_dssp             SEEECCHHHHHHH-SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---HHHHH
T ss_pred             EEEeccHHHHHhh-CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc---hhhhh
Confidence            3678888764221 12478999998731                  12456888999999999999876543   23334


Q ss_pred             HHHHHHHhCCeEeEEee
Q 022962          236 SERAVQLMGASLLQLCS  252 (289)
Q Consensus       236 ~~~~l~~~g~~~~~~~~  252 (289)
                      +...+...||.......
T Consensus        82 ~~~~~~~~g~~~~~~ii   98 (256)
T d1g60a_          82 ICQYLVSKGMIFQNWIT   98 (256)
T ss_dssp             HHHHHHHTTCEEEEEEE
T ss_pred             hhhhhhcccceeeeeeE
Confidence            45567788998776543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=91.01  E-value=0.2  Score=38.59  Aligned_cols=94  Identities=14%  Similarity=0.092  Sum_probs=58.5

Q ss_pred             CCeEEEEcCCC--ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTGA--GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG~--G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +.+||=-|.+.  |..++-+|+.. +++|+++..+++..+.+++    +|.+.+ +...+...-.......+.+|+|+-.
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~----lGad~v-i~~~~~~~~~~~~~~~~gvd~vid~   97 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQ----LGASEV-ISREDVYDGTLKALSKQQWQGAVDP   97 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHH----HTCSEE-EEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHh----hcccce-EeccchhchhhhcccCCCceEEEec
Confidence            56788766533  44566677765 5799999999988777655    565433 2222211111111224679998855


Q ss_pred             CcccHHHHHHHHccccccCeEEEEE
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      --.   ..+.++.+.|+++|+++++
T Consensus        98 vgg---~~~~~~~~~l~~~G~iv~~  119 (167)
T d1tt7a2          98 VGG---KQLASLLSKIQYGGSVAVS  119 (167)
T ss_dssp             CCT---HHHHHHHTTEEEEEEEEEC
T ss_pred             CcH---HHHHHHHHHhccCceEEEe
Confidence            322   3556677899999999864

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.93  E-value=0.52  Score=38.65  Aligned_cols=105  Identities=14%  Similarity=0.172  Sum_probs=69.5

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC-hHHHHHHHHHHHHcCCCCEEEEeccccccCCC-------C
Q 022962          118 SCNSNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM-NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------V  187 (289)
Q Consensus       118 ~~~~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s-~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-------~  187 (289)
                      +++ |+++|=-|+++|+ |..+|+.+  .+++|+.+|.+ ++.++.+.+..+..+. ++.+++.|+.+...-       .
T Consensus        15 sL~-gK~~lITGas~GI-G~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~   91 (272)
T d1g0oa_          15 SLE-GKVALVTGAGRGI-GREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAV   91 (272)
T ss_dssp             CCT-TCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCC-CCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHHHHHHHHHH
Confidence            344 8899999998775 66666543  47899999987 5566666666666665 588888888763210       0


Q ss_pred             cCCCCceEEEEcC-----------------------cccHHHHHHHHccccccCeEEEEEE
Q 022962          188 SFREQYDVAVARA-----------------------VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       188 ~~~~~fD~V~sn~-----------------------~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ..-+..|+++.|+                       +...-.+.+.+.+.|+.+|..++..
T Consensus        92 ~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          92 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            0114789999883                       0112345567777778888877653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=90.91  E-value=0.13  Score=39.48  Aligned_cols=98  Identities=7%  Similarity=-0.084  Sum_probs=57.1

Q ss_pred             CCCCCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCce
Q 022962          119 CNSNLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYD  194 (289)
Q Consensus       119 ~~~~~~VLDiGcG~G~-~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD  194 (289)
                      ++++++||=+|+|.+. .++.+++.....+|+++|.+++..+.+++    +|.+.+ +...+-++...   .....+.+|
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~----~Ga~~~-i~~~~~~~~~~~~~~~~~~~G~D  100 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGATEC-VNPQDYKKPIQEVLTEMSNGGVD  100 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSEE-ECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH----hCCeeE-EecCCchhHHHHHHHHHhcCCCC
Confidence            4568999999997543 44445666777899999999999887765    454321 11112111100   001125689


Q ss_pred             EEEEcCcccHHHHHHHHccccccC-eEEEE
Q 022962          195 VAVARAVAEMRILAEYCLPLVRVG-GLFVA  223 (289)
Q Consensus       195 ~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~  223 (289)
                      +|+-..-.  ...++.+...++++ |.+++
T Consensus       101 ~vid~~G~--~~~~~~a~~~~~~~~g~~~~  128 (176)
T d2jhfa2         101 FSFEVIGR--LDTMVTALSCCQEAYGVSVI  128 (176)
T ss_dssp             EEEECSCC--HHHHHHHHHHBCTTTCEEEE
T ss_pred             EEEecCCc--hhHHHHHHHHHhcCCcceEE
Confidence            98865322  23444455567776 55544

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=90.64  E-value=0.36  Score=36.99  Aligned_cols=118  Identities=10%  Similarity=0.098  Sum_probs=70.6

Q ss_pred             EEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC--
Q 022962          125 LVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--  200 (289)
Q Consensus       125 VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--  200 (289)
                      |-=||+  |..|..+|...  .+.+|++.|.+++.++...++....   ....-...+.++...   -...|.++...  
T Consensus         5 Ig~IGl--G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~---~~~~~~ii~~~~~   76 (176)
T d2pgda2           5 IALIGL--AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKG---TKVLGAHSLEEMVSK---LKKPRRIILLVKA   76 (176)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTT---SSCEECSSHHHHHHH---BCSSCEEEECSCT
T ss_pred             EEEEeE--hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcccc---ccccchhhhhhhhhh---hcccceEEEecCc
Confidence            334555  57777776543  4679999999998877665431111   111111122222111   13457777653  


Q ss_pred             cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          201 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 ~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      ......+...+...+++|-.++ ..+....++..++.+.+.+.|...++..
T Consensus        77 ~~~v~~v~~~l~~~~~~g~iii-d~sT~~~~~~~~~~~~~~~~g~~~ldap  126 (176)
T d2pgda2          77 GQAVDNFIEKLVPLLDIGDIII-DGGNSEYRDTMRRCRDLKDKGILFVGSG  126 (176)
T ss_dssp             THHHHHHHHHHHHHCCTTCEEE-ECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hHHHHHHHHHHHhccccCcEEE-ecCcchhHHHHHHHHHHHhcCCceeccc
Confidence            3345667778888888876654 4555556666777788889999888764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=90.48  E-value=0.41  Score=39.19  Aligned_cols=76  Identities=14%  Similarity=0.080  Sum_probs=55.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-------CcCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-------~~~~~~  192 (289)
                      ++.+|=-|.++|+ |..+|+.+  .+++|+.+|.+++.++.+.+.++..+. ++..+..|+.+...-       ...-+.
T Consensus         5 gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           5 GKVCLVTGAGGNI-GLATALRLAEEGTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            7889988987764 66666543  478999999999999988888877765 588888898753210       000147


Q ss_pred             ceEEEEc
Q 022962          193 YDVAVAR  199 (289)
Q Consensus       193 fD~V~sn  199 (289)
                      .|+++.|
T Consensus        83 iDilVnn   89 (260)
T d1zema1          83 IDFLFNN   89 (260)
T ss_dssp             CCEEEEC
T ss_pred             CCeehhh
Confidence            8999988

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.91  E-value=0.55  Score=35.79  Aligned_cols=118  Identities=15%  Similarity=0.203  Sum_probs=68.3

Q ss_pred             CCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcCcccHHHH
Q 022962          131 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRIL  207 (289)
Q Consensus       131 G~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~~~~l  207 (289)
                      |.|..|..+|+..  .+.+|++.|.+++..+.+.+.-..... .+... ..+..++.... .......++..........
T Consensus         8 GlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   85 (178)
T d1pgja2           8 GLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAASL-KKPRKALILVQAGAATDST   85 (178)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHHHB-CSSCEEEECCCCSHHHHHH
T ss_pred             eehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhh-hhhhhHHHHhc-ccceEEEEeecCcchhhhh
Confidence            5667777777653  468999999999887666553222111 12322 22222221100 0112222223334455677


Q ss_pred             HHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          208 AEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       208 l~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      +......+++|..++ .......+...++.+.+...++..++..
T Consensus        86 ~~~~~~~~~~~~iii-~~st~~~~~~~~~~~~l~~~~~~~ldap  128 (178)
T d1pgja2          86 IEQLKKVFEKGDILV-DTGNAHFKDQGRRAQQLEAAGLRFLGMG  128 (178)
T ss_dssp             HHHHHHHCCTTCEEE-ECCCCCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             hhhhhhhccccceec-ccCccchhHHHHHHHHHhhcceeEeccc
Confidence            778888888887765 4555556666677777888898887764

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.59  E-value=1.2  Score=35.83  Aligned_cols=80  Identities=6%  Similarity=-0.098  Sum_probs=51.9

Q ss_pred             EEEeccccccCCCCcCCCCceEEEEcC---------------cccHHHHHHHHccccccCeEEEEEEcCC------cHHH
Q 022962          174 QIVRGRAETLGKDVSFREQYDVAVARA---------------VAEMRILAEYCLPLVRVGGLFVAAKGHD------PQEE  232 (289)
Q Consensus       174 ~~~~~d~~~~~~~~~~~~~fD~V~sn~---------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~------~~~e  232 (289)
                      .++.+|..++-.. ..++++|+|++..               .......++++.++|||+|.+++..+..      ....
T Consensus         6 ~~~~~D~le~l~~-l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~   84 (279)
T d1eg2a_           6 VYDVCDCLDTLAK-LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDL   84 (279)
T ss_dssp             EEEECCHHHHHHT-SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCH
T ss_pred             eEEechHHHHHhh-CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccch
Confidence            3567777664221 1247899999973               1124777889999999999999865432      1223


Q ss_pred             HHHHHHHHHHhCCeEeEEeeee
Q 022962          233 VKNSERAVQLMGASLLQLCSVE  254 (289)
Q Consensus       233 i~~~~~~l~~~g~~~~~~~~~~  254 (289)
                      ...+...+...|+.+.......
T Consensus        85 ~~~~~~~~~~~~~~~~~~i~~~  106 (279)
T d1eg2a_          85 ISIISHMRQNSKMLLANLIIWN  106 (279)
T ss_dssp             HHHHHHHHHHCCCEEEEEEEEE
T ss_pred             hhHHHHHHhccCceeeeeeeec
Confidence            3344455667898887665443

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=89.35  E-value=0.48  Score=40.90  Aligned_cols=69  Identities=19%  Similarity=0.153  Sum_probs=44.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-------CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCce
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC-------PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYD  194 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~-------p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD  194 (289)
                      ..+|+++|+|+|.++..+....       ...+++.+|+|+..-+.-++...  ...+++++ .++++++.      ..-
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~--~~~~i~w~-~~~~~~~~------~~g  150 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA--GIRNIHWH-DSFEDVPE------GPA  150 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST--TCSSEEEE-SSGGGSCC------SSE
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc--ccccceec-cChhhccc------CCe
Confidence            4589999999999987765432       24579999999976544443322  23457654 45555432      236


Q ss_pred             EEEEc
Q 022962          195 VAVAR  199 (289)
Q Consensus       195 ~V~sn  199 (289)
                      +|+||
T Consensus       151 ~iiaN  155 (365)
T d1zkda1         151 VILAN  155 (365)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            77787

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.34  E-value=0.56  Score=38.16  Aligned_cols=101  Identities=16%  Similarity=0.084  Sum_probs=68.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEE-eCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-------CcCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~i-D~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-------~~~~~  191 (289)
                      |++||=-|.+ +.+|..+|+.+  .+++|+.. +.+++.++.+.+.++..|. ++.++..|+.+...-       ...-+
T Consensus         6 GK~alITGas-~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (259)
T d1ja9a_           6 GKVALTTGAG-RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSHFG   83 (259)
T ss_dssp             TCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHHHcC
Confidence            8899988855 55677777654  46788764 6777778888888888875 688899998763210       00114


Q ss_pred             CceEEEEcC-----------------------cccHHHHHHHHccccccCeEEEEE
Q 022962          192 QYDVAVARA-----------------------VAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       192 ~fD~V~sn~-----------------------~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      ..|+++.|+                       +...-.+.+.+.+.++.+|..++.
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii  139 (259)
T d1ja9a_          84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT  139 (259)
T ss_dssp             CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence            799999883                       001234556666777777777665

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=89.01  E-value=0.61  Score=38.06  Aligned_cols=77  Identities=12%  Similarity=0.009  Sum_probs=56.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC--------CCcCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK--------DVSFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~--------~~~~~~  191 (289)
                      ++++|=-|.++| +|..+|+.+  .+++|+.+|.+++.++.+.+.++..+. ++.++..|+.+...        ...+..
T Consensus         8 GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~~~   85 (259)
T d2ae2a_           8 GCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHFHG   85 (259)
T ss_dssp             TCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            889999998876 466766553  468999999999999888877777664 68888888865321        011234


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        86 ~idilvnnA   94 (259)
T d2ae2a_          86 KLNILVNNA   94 (259)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEECC
Confidence            789999983

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=88.83  E-value=0.46  Score=38.97  Aligned_cols=76  Identities=11%  Similarity=0.025  Sum_probs=52.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~  192 (289)
                      ++.+|=-|+++| +|..+|+.+  .+++|+.+|.+++.++.+.+.....  .++.+++.|+.+...-.       ..-+.
T Consensus         6 gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (268)
T d2bgka1           6 DKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP--DVISFVHCDVTKDEDVRNLVDTTIAKHGK   82 (268)
T ss_dssp             TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC--CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            889999998877 577777653  5789999999998876655544322  35888888987642100       00147


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        83 iD~lVnnA   90 (268)
T d2bgka1          83 LDIMFGNV   90 (268)
T ss_dssp             CCEEEECC
T ss_pred             cceecccc
Confidence            89999883

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=88.73  E-value=0.36  Score=36.65  Aligned_cols=114  Identities=12%  Similarity=0.080  Sum_probs=62.4

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc-CCCCEEE------EeccccccCCCCcCCCCceEE
Q 022962          124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-QLLNVQI------VRGRAETLGKDVSFREQYDVA  196 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-~l~ni~~------~~~d~~~~~~~~~~~~~fD~V  196 (289)
                      +|.=||+|.-..++.......+.+|+.+|.+++.++.++..-... .......      .-.|..+.      -..+|+|
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~------~~~aD~i   76 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA------VKDADVI   76 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH------HTTCSEE
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH------hcCCCEE
Confidence            566677765443333222224689999999998877665431100 0000111      11111111      1358998


Q ss_pred             EEc-CcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCC
Q 022962          197 VAR-AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA  245 (289)
Q Consensus       197 ~sn-~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~  245 (289)
                      +.- .....+.+++++.+.|+++-.+++..|......  .+.+.+...+.
T Consensus        77 ii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~~~~~--~~~~~~~~~~~  124 (184)
T d1bg6a2          77 LIVVPAIHHASIAANIASYISEGQLIILNPGATGGAL--EFRKILRENGA  124 (184)
T ss_dssp             EECSCGGGHHHHHHHHGGGCCTTCEEEESSCCSSHHH--HHHHHHHHTTC
T ss_pred             EEEEchhHHHHHHHHhhhccCCCCEEEEeCCCCccHH--HHHHHHHHhcC
Confidence            864 344578999999999999987766555433322  12344445543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=88.52  E-value=0.79  Score=37.35  Aligned_cols=77  Identities=14%  Similarity=0.014  Sum_probs=57.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--------CcCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--------VSFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--------~~~~~  191 (289)
                      ++++|=.|+..| +|..+|+.+  .+++|+.+|.+++.++.+.+..+..+. ++.++..|+.+...-        ..+++
T Consensus         6 gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           6 GTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            889999999766 566666543  478999999999998888888877775 588888898764310        12335


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        84 ~idilinna   92 (258)
T d1ae1a_          84 KLNILVNNA   92 (258)
T ss_dssp             CCCEEEECC
T ss_pred             CcEEEeccc
Confidence            789998873

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=88.41  E-value=1.6  Score=32.66  Aligned_cols=110  Identities=15%  Similarity=0.063  Sum_probs=66.1

Q ss_pred             eEEEEcCCCCh--HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962          124 KLVDVGTGAGL--PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  200 (289)
Q Consensus       124 ~VLDiGcG~G~--~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-  200 (289)
                      +|.=||||.=.  .-+......++.+++.+|.+++..+   ..++.++...   ...|++++..     ...|+|+... 
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~---~~~~~~~~~~---~~~~~~~ll~-----~~iD~V~I~tp   71 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLG---TLATRYRVSA---TCTDYRDVLQ-----YGVDAVMIHAA   71 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHH---HHHHHTTCCC---CCSSTTGGGG-----GCCSEEEECSC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHH---HHHHhccccc---ccccHHHhcc-----cccceeccccc
Confidence            56778887421  1122333457788899999987644   4445555432   2356666532     3589887543 


Q ss_pred             cccHHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHhCCeE
Q 022962          201 VAEMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGASL  247 (289)
Q Consensus       201 ~~~~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~g~~~  247 (289)
                      ......++.   .+|+.|=.++++++. ...++..++.+..++.|..+
T Consensus        72 ~~~H~~~~~---~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~  116 (167)
T d1xeaa1          72 TDVHSTLAA---FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL  116 (167)
T ss_dssp             GGGHHHHHH---HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             ccccccccc---cccccccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            333334443   345556667788764 45677788888888888654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.93  E-value=0.73  Score=37.39  Aligned_cols=77  Identities=17%  Similarity=0.143  Sum_probs=57.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-------CcCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-------~~~~~~  192 (289)
                      ++.+|=-|.++| +|..+|+.+  .+++|+.+|.+++.++.+.+.++..+. ++.++..|+.+...-       ...-+.
T Consensus        10 nKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1          10 NKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             SCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            678888897766 688888764  468999999999999888887777664 688889998763210       001157


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        88 iDilvnna   95 (251)
T d2c07a1          88 VDILVNNA   95 (251)
T ss_dssp             CCEEEECC
T ss_pred             ceeeeecc
Confidence            99999883

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.91  E-value=0.72  Score=37.65  Aligned_cols=77  Identities=9%  Similarity=-0.026  Sum_probs=56.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--------CcCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--------VSFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--------~~~~~  191 (289)
                      ++++|=-|+++|+ |..+|+.+  .+++|+.+|.+++.++.+.+..+..+. ++..+..|+.+...-        ..+.+
T Consensus         8 gK~alVTGas~GI-G~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   85 (259)
T d1xq1a_           8 AKTVLVTGGTKGI-GHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMFGG   85 (259)
T ss_dssp             TCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            8899999987774 66666543  478999999999998888777776654 688888998753210        11235


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        86 ~idilvnnA   94 (259)
T d1xq1a_          86 KLDILINNL   94 (259)
T ss_dssp             CCSEEEEEC
T ss_pred             Ccccccccc
Confidence            789999983

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.74  E-value=0.63  Score=33.54  Aligned_cols=89  Identities=9%  Similarity=-0.018  Sum_probs=58.3

Q ss_pred             CCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEEEcCcccH-HHH
Q 022962          130 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVARAVAEM-RIL  207 (289)
Q Consensus       130 cG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~sn~~~~~-~~l  207 (289)
                      ||.|..|..+++...+..|+.||.+++..+.++.    .   ++.++.+|..+-..-. ..-+..+.+++..-.+. ..+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~---~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~   78 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----S---GANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIH   78 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----T---TCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----c---CccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHH
Confidence            6778899999988877889999999988765543    2   4788999987632100 01146788887643332 223


Q ss_pred             HHHHccccccCeEEEEEE
Q 022962          208 AEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       208 l~~~~~~LkpgG~l~~~~  225 (289)
                      +-...+.+.|...++...
T Consensus        79 ~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          79 CILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             HHHHHHHHCSSSCEEEEC
T ss_pred             HHHHHHHHCCCceEEEEE
Confidence            334455678888877654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.69  E-value=0.67  Score=38.12  Aligned_cols=78  Identities=14%  Similarity=0.112  Sum_probs=57.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCC-------cCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDV-------SFR  190 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~-------~~~  190 (289)
                      |+++|=-|+++| +|..+|+.+  .+++|+.+|.+++.++.+.+.++..+..  ++.++.+|+.+...-.       ..-
T Consensus         4 gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           4 GKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             TCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            788999998877 476666543  4789999999999999888888877653  5889999987642100       001


Q ss_pred             CCceEEEEcC
Q 022962          191 EQYDVAVARA  200 (289)
Q Consensus       191 ~~fD~V~sn~  200 (289)
                      +..|+++.|+
T Consensus        83 G~iDilVnnA   92 (274)
T d1xhla_          83 GKIDILVNNA   92 (274)
T ss_dssp             SCCCEEEECC
T ss_pred             CCceEEEeec
Confidence            4789999883

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.62  E-value=0.61  Score=38.31  Aligned_cols=77  Identities=19%  Similarity=0.125  Sum_probs=56.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCC-------cCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDV-------SFR  190 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~-------~~~  190 (289)
                      ++++|=-|+++| +|..+|+.+  .+++|+.+|.+++.++.+.+.++..+..  ++.++.+|+.+...-.       ..-
T Consensus         5 gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           5 NKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            788998998776 577766553  4689999999999999888888777653  5888999987642100       001


Q ss_pred             CCceEEEEc
Q 022962          191 EQYDVAVAR  199 (289)
Q Consensus       191 ~~fD~V~sn  199 (289)
                      +..|+++.|
T Consensus        84 g~iDilvnn   92 (272)
T d1xkqa_          84 GKIDVLVNN   92 (272)
T ss_dssp             SCCCEEEEC
T ss_pred             CCceEEEeC
Confidence            478999988

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.62  E-value=0.7  Score=37.63  Aligned_cols=77  Identities=17%  Similarity=0.101  Sum_probs=57.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-------CcCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-------~~~~~~  192 (289)
                      ++++|=-|.++| +|..+|+.+  .+++|+.+|.+++.++.+.+.++..+. ++.+++.|+.+...-       ...-+.
T Consensus        11 gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dvs~~~~~~~~~~~~~~~~g~   88 (255)
T d1fmca_          11 GKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            788998887766 577777653  578999999999999888888887764 688889998764210       000147


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        89 iDilvnnA   96 (255)
T d1fmca_          89 VDILVNNA   96 (255)
T ss_dssp             CCEEEECC
T ss_pred             CCEeeeCC
Confidence            99999883

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.05  E-value=1.4  Score=32.94  Aligned_cols=110  Identities=15%  Similarity=0.100  Sum_probs=64.4

Q ss_pred             EEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC--
Q 022962          125 LVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--  200 (289)
Q Consensus       125 VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--  200 (289)
                      |-=||+  |..|..+|+.  ..+.+|++.|.+++..+.+..    .+.   . ...+..+..      ...|+|+..-  
T Consensus         4 Ig~IGl--G~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~----~~~---~-~~~~~~e~~------~~~diii~~v~~   67 (162)
T d3cuma2           4 IAFIGL--GHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA----AGA---S-AARSARDAV------QGADVVISMLPA   67 (162)
T ss_dssp             EEEECC--STTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH----TTC---E-ECSSHHHHH------TSCSEEEECCSC
T ss_pred             EEEEEE--HHHHHHHHHHHHHCCCeEEEEECchhhhhhhhh----hhc---c-ccchhhhhc------cccCeeeecccc
Confidence            444555  5555555543  236799999999887665543    221   1 223333322      3578877652  


Q ss_pred             cccHHHHHHH---HccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          201 VAEMRILAEY---CLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       201 ~~~~~~ll~~---~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      ....+.++..   +...+++|-. ++..+....+...++.+.+++.|...++..
T Consensus        68 ~~~~~~v~~~~~~~~~~l~~g~i-iid~st~~p~~~~~~~~~~~~~gi~~~dap  120 (162)
T d3cuma2          68 SQHVEGLYLDDDGLLAHIAPGTL-VLECSTIAPTSARKIHAAARERGLAMLDAP  120 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHSCTTCE-EEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             hhhHHHHHhccccccccCCCCCE-EEECCCCCHHHHHHHHHHHHHCCCcEEecc
Confidence            2234444433   3445666655 445555566777778888889998887653

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.65  E-value=0.84  Score=37.21  Aligned_cols=77  Identities=18%  Similarity=0.107  Sum_probs=56.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCC-------cCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDV-------SFR  190 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~-------~~~  190 (289)
                      ++.+|=-|+++| +|..+|+.+  .+++|+.+|.+++.++.+.+.++..+..  ++.++..|+.+...-.       ..-
T Consensus         5 gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           5 EKVAIITGSSNG-IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            778888898877 477777653  5789999999999998888888777653  5899999987542110       001


Q ss_pred             CCceEEEEc
Q 022962          191 EQYDVAVAR  199 (289)
Q Consensus       191 ~~fD~V~sn  199 (289)
                      +..|+++.|
T Consensus        84 g~iDilvnn   92 (264)
T d1spxa_          84 GKLDILVNN   92 (264)
T ss_dssp             SCCCEEEEC
T ss_pred             CCCCEeecc
Confidence            478999988

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=86.65  E-value=1.1  Score=36.26  Aligned_cols=77  Identities=14%  Similarity=0.037  Sum_probs=55.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-------CcCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-------~~~~~~  192 (289)
                      ++.+|=-|+++| +|..+|+.+  .+++|+.+|.+++.++.+.+.++..+. ++.++..|+.+...-       ...-++
T Consensus         2 gKValITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSG-IGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            456677787666 477777653  578999999999999888888877765 688899998764311       000157


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        80 iDilVnnA   87 (257)
T d2rhca1          80 VDVLVNNA   87 (257)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEecc
Confidence            89999884

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.49  E-value=0.78  Score=37.48  Aligned_cols=78  Identities=12%  Similarity=0.074  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCC
Q 022962          121 SNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFRE  191 (289)
Q Consensus       121 ~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~  191 (289)
                      +|+++|=-|+++| +|..+|+.+  .+++|++++.+++.++.+.+........++.++..|..+.....       ...+
T Consensus        13 ~GK~alITGassG-IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   91 (269)
T d1xu9a_          13 QGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG   91 (269)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence            3889999999988 477777654  47899999999999988877665554446777777776432110       0114


Q ss_pred             CceEEEEc
Q 022962          192 QYDVAVAR  199 (289)
Q Consensus       192 ~fD~V~sn  199 (289)
                      ..|+++.|
T Consensus        92 ~~~~li~n   99 (269)
T d1xu9a_          92 GLDMLILN   99 (269)
T ss_dssp             SCSEEEEC
T ss_pred             Cccccccc
Confidence            67888877

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=86.02  E-value=3.5  Score=33.86  Aligned_cols=120  Identities=9%  Similarity=-0.019  Sum_probs=83.5

Q ss_pred             EcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-CcCCCCceEEEEcC----cc
Q 022962          128 VGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAVARA----VA  202 (289)
Q Consensus       128 iGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-~~~~~~fD~V~sn~----~~  202 (289)
                      +=.||-  .+......+.-+++++|+.+.-.+.++++...  -.++.+++.|-.+.-.. ....+.--+|+...    ..
T Consensus        89 ~YPGSP--~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~--~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpYE~k~  164 (271)
T d2oo3a1          89 YYPGSP--YFAINQLRSQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKE  164 (271)
T ss_dssp             EEECHH--HHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTT
T ss_pred             cCCCCH--HHHHHhCCCCCceEEeecCHHHHHHHHHHhcc--CCCceEEcCchHHHHHhhCCCCCCceEEEecCCcCCHH
Confidence            445544  44444446788999999999888777765332  24799999887652100 00124557888873    34


Q ss_pred             cHHHHHHHHccccc--cCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962          203 EMRILAEYCLPLVR--VGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       203 ~~~~ll~~~~~~Lk--pgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                      ++..+++.+...++  |.|.+++..+-....+...+.+.++..|.+...+.
T Consensus       165 ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~~~~~k~l~~E  215 (271)
T d2oo3a1         165 EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSVRIE  215 (271)
T ss_dssp             HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSSEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHHhcCccceeEE
Confidence            67777777777777  89999998887777888888888889888766543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=86.01  E-value=0.21  Score=39.17  Aligned_cols=96  Identities=15%  Similarity=0.170  Sum_probs=55.6

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec----------cccccCCCCc--
Q 022962          122 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG----------RAETLGKDVS--  188 (289)
Q Consensus       122 ~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~----------d~~~~~~~~~--  188 (289)
                      +.+|+=||+|. |..++..|... ++.|+++|+++..++..+.    ++-..+++...          .+.++..+..  
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~----l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~  103 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVES----LGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK  103 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHH----TTCEECCC-----------------------CC
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHH----hhcceEEEeccccccccccccchhhcCHHHHHH
Confidence            57999999995 66667777665 6799999999987766655    33222211111          1111100000  


Q ss_pred             -------CCCCceEEEEcCcc----cHHHHHHHHccccccCeEEE
Q 022962          189 -------FREQYDVAVARAVA----EMRILAEYCLPLVRVGGLFV  222 (289)
Q Consensus       189 -------~~~~fD~V~sn~~~----~~~~ll~~~~~~LkpgG~l~  222 (289)
                             .-...|+|+..+.-    .+.-+-+++.+.+|||..++
T Consensus       104 ~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         104 QAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence                   00258999987421    12223356667899999887

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.90  E-value=1  Score=36.44  Aligned_cols=77  Identities=12%  Similarity=0.035  Sum_probs=53.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHH-HHcCCCCEEEEeccccccCCCC-------cCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAV-SLTQLLNVQIVRGRAETLGKDV-------SFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~-~~~~l~ni~~~~~d~~~~~~~~-------~~~~  191 (289)
                      ++++|=-|.++| +|..+|+.+  .+++|+.+|.+++.++.+.+.. +..+. ++.++..|+.+...-.       ..-+
T Consensus         5 gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           5 GRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            789999998876 477666543  4789999999998877665543 44554 5888889987632100       0014


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        83 ~iDiLVnnA   91 (251)
T d1vl8a_          83 KLDTVVNAA   91 (251)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            799999984

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.69  E-value=0.98  Score=37.17  Aligned_cols=77  Identities=10%  Similarity=0.044  Sum_probs=53.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHH-HcCCCCEEEEeccccccCCC-------CcCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVS-LTQLLNVQIVRGRAETLGKD-------VSFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~-~~~l~ni~~~~~d~~~~~~~-------~~~~~  191 (289)
                      |+++|=-|+++| +|..+|+.+  .+++|+.+|.+.+.++.+.+... ..+ .++.++..|+.+...-       ....+
T Consensus        25 gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g-~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          25 GKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG-NKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC-CceEEEEecccChHHHHHHhhhhhhhcc
Confidence            889999999776 577776553  46899999999988776665443 334 3688888888764311       01125


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus       103 ~iDilvnnA  111 (294)
T d1w6ua_         103 HPNIVINNA  111 (294)
T ss_dssp             SCSEEEECC
T ss_pred             ccchhhhhh
Confidence            789999883

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=85.69  E-value=0.81  Score=35.20  Aligned_cols=92  Identities=13%  Similarity=0.173  Sum_probs=56.7

Q ss_pred             CCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962          122 NLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  199 (289)
Q Consensus       122 ~~~VLDiGcG--~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn  199 (289)
                      +.+||=.|..  .|..++.+|+.. +++|+++..+++..+.+++    +|.+.  ++..+-.+.... .....+|.|+= 
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~----lGad~--vi~~~~~~~~~~-l~~~~~~~vvD-  102 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKS----LGASR--VLPRDEFAESRP-LEKQVWAGAID-  102 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHH----HTEEE--EEEGGGSSSCCS-SCCCCEEEEEE-
T ss_pred             CCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHh----hcccc--ccccccHHHHHH-HHhhcCCeeEE-
Confidence            4577766632  344556677775 6899999999988766654    56432  233222222111 11356888763 


Q ss_pred             CcccHHHHHHHHccccccCeEEEEE
Q 022962          200 AVAEMRILAEYCLPLVRVGGLFVAA  224 (289)
Q Consensus       200 ~~~~~~~ll~~~~~~LkpgG~l~~~  224 (289)
                      .+.  ...+....+.|+++|+++.+
T Consensus       103 ~Vg--g~~~~~~l~~l~~~Griv~~  125 (177)
T d1o89a2         103 TVG--DKVLAKVLAQMNYGGCVAAC  125 (177)
T ss_dssp             SSC--HHHHHHHHHTEEEEEEEEEC
T ss_pred             Ecc--hHHHHHHHHHhccccceEee
Confidence            333  24577888899999999875

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=85.56  E-value=1.3  Score=36.04  Aligned_cols=78  Identities=18%  Similarity=0.092  Sum_probs=55.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCC-------cCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDV-------SFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~-------~~~~  191 (289)
                      ++++|=-|+++|+ |..+|+.+  .+++|+.+|.+++.++.+.+.....+. .++.++..|+.+...-.       ..-+
T Consensus         4 gK~alITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           4 DRVVLITGGGSGL-GRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            7788888988774 66666543  478999999999998887776665543 36888899987642110       0014


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        83 ~iDiLVnnA   91 (258)
T d1iy8a_          83 RIDGFFNNA   91 (258)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            789999883

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=85.31  E-value=1.7  Score=34.71  Aligned_cols=101  Identities=10%  Similarity=0.065  Sum_probs=63.7

Q ss_pred             CCeEEEEcCCC--ChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-------CcCC
Q 022962          122 NLKLVDVGTGA--GLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFR  190 (289)
Q Consensus       122 ~~~VLDiGcG~--G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-------~~~~  190 (289)
                      +++||=-|+++  |+ |..+|+.  ..+++|+.+|.+++..+.+++.....+.  ....+.|..+....       ....
T Consensus         5 gK~~lITGass~~GI-G~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           5 GKRILVTGVASKLSI-AYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGS--DIVLQCDVAEDASIDTMFAELGKVW   81 (258)
T ss_dssp             TCEEEECCCCSTTSH-HHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCchhH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCC--cceeecccchHHHHHHHHHHhhhcc
Confidence            78899988876  53 3333332  2478999999999888888777666653  34445454432100       0112


Q ss_pred             CCceEEEEcC----------------------------cccHHHHHHHHccccccCeEEEEEE
Q 022962          191 EQYDVAVARA----------------------------VAEMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       191 ~~fD~V~sn~----------------------------~~~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ...|.++.++                            ......+.+.+...+++++.+++..
T Consensus        82 ~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~is  144 (258)
T d1qsga_          82 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS  144 (258)
T ss_dssp             SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEec
Confidence            5789988772                            0123455567777888888877654

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=85.07  E-value=2.7  Score=33.12  Aligned_cols=114  Identities=11%  Similarity=0.068  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCCChHHH----HHHHHCCCCEEEE-EeCChHHHHHHHHHHHHcCCCCEE-EEeccccccCCCCcCCCCceE
Q 022962          122 NLKLVDVGTGAGLPGL----VLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQ-IVRGRAETLGKDVSFREQYDV  195 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l----~la~~~p~~~V~~-iD~s~~~l~~a~~~~~~~~l~ni~-~~~~d~~~~~~~~~~~~~fD~  195 (289)
                      .-+|-=||||  .++.    ...+..++.+|++ +|.+++.   +++.++.++++... ....|++++-.    +...|+
T Consensus        33 ~iriaiIG~G--~~~~~~~~~~~~~~~~~~ivav~d~~~~~---a~~~~~~~~i~~~~~~~~~d~~ell~----~~~iD~  103 (221)
T d1h6da1          33 RFGYAIVGLG--KYALNQILPGFAGCQHSRIEALVSGNAEK---AKIVAAEYGVDPRKIYDYSNFDKIAK----DPKIDA  103 (221)
T ss_dssp             CEEEEEECCS--HHHHHTHHHHTTTCSSEEEEEEECSCHHH---HHHHHHHTTCCGGGEECSSSGGGGGG----CTTCCE
T ss_pred             CEEEEEEcCc--HHHHHHHHHHHHhCCCceEEEEecCCHHH---HHHHHHhhccccccccccCchhhhcc----ccccee
Confidence            4588889997  4443    1223346788885 5988866   44556666765322 22356776543    256899


Q ss_pred             EEEcC-cccHHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHhCCeE
Q 022962          196 AVARA-VAEMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGASL  247 (289)
Q Consensus       196 V~sn~-~~~~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~g~~~  247 (289)
                      |+... ......+.   ..+|+.|=.++++++. ...+++.++.+..++.|..+
T Consensus       104 V~I~tp~~~H~~~~---~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~  154 (221)
T d1h6da1         104 VYIILPNSLHAEFA---IRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKL  154 (221)
T ss_dssp             EEECSCGGGHHHHH---HHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             eeeccchhhhhhHH---HHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence            98653 23233333   3445567677777753 45677777777777777544

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=84.45  E-value=4.3  Score=30.63  Aligned_cols=70  Identities=14%  Similarity=0.147  Sum_probs=40.5

Q ss_pred             CCeEEEEcCCCChHHH---HHHHHCCC---CEEEEEeCChHHHHH----HHHHHHHcCCCCEEE-Eeccccc-cCCCCcC
Q 022962          122 NLKLVDVGTGAGLPGL---VLAIACPD---WKVTLLESMNKRCVF----LEHAVSLTQLLNVQI-VRGRAET-LGKDVSF  189 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l---~la~~~p~---~~V~~iD~s~~~l~~----a~~~~~~~~l~ni~~-~~~d~~~-~~~~~~~  189 (289)
                      .-+|.=||+|+...+.   .+....+.   .+++.+|++++.++.    ++......+.+ .++ ...|..+ +      
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~eal------   75 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPD-IEFAATTDPEEAF------   75 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTT-SEEEEESCHHHHH------
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCC-cceEecCChhhcc------
Confidence            4467788999864332   22222333   489999999988653    33344445543 222 2344433 3      


Q ss_pred             CCCceEEEEc
Q 022962          190 REQYDVAVAR  199 (289)
Q Consensus       190 ~~~fD~V~sn  199 (289)
                       ...|+|+..
T Consensus        76 -~~AD~Vvit   84 (167)
T d1u8xx1          76 -TDVDFVMAH   84 (167)
T ss_dssp             -SSCSEEEEC
T ss_pred             -CCCCEEEEC
Confidence             246898876

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.07  E-value=1.6  Score=35.17  Aligned_cols=74  Identities=15%  Similarity=0.184  Sum_probs=53.5

Q ss_pred             EEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCCceE
Q 022962          125 LVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQYDV  195 (289)
Q Consensus       125 VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~fD~  195 (289)
                      +|=-|+++| +|..+|+.+  .+++|+.+|.+++.++.+.+.++..+. ++.++.+|+.+...-.       ..-+..|+
T Consensus         4 alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           4 ALVTGAGQG-IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             EEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             EEEcCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            466687766 577777653  578999999999999888888877764 6888899987643110       00157999


Q ss_pred             EEEcC
Q 022962          196 AVARA  200 (289)
Q Consensus       196 V~sn~  200 (289)
                      ++.|+
T Consensus        82 lVnnA   86 (255)
T d1gega_          82 IVNNA   86 (255)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            99883

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=83.90  E-value=0.45  Score=41.20  Aligned_cols=23  Identities=17%  Similarity=0.158  Sum_probs=19.5

Q ss_pred             cHHHHHHHHccccccCeEEEEEE
Q 022962          203 EMRILAEYCLPLVRVGGLFVAAK  225 (289)
Q Consensus       203 ~~~~ll~~~~~~LkpgG~l~~~~  225 (289)
                      ++..+|+.=.+-|+|||++++..
T Consensus       187 D~~~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         187 DHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             HHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEE
Confidence            67888888888999999999754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=82.65  E-value=1.1  Score=36.35  Aligned_cols=77  Identities=14%  Similarity=0.078  Sum_probs=52.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHH-HHcCCCCEEEEeccccccCCC-------CcCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAV-SLTQLLNVQIVRGRAETLGKD-------VSFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~-~~~~l~ni~~~~~d~~~~~~~-------~~~~~  191 (289)
                      ++++|=-|.++| +|..+|+.+  .+++|+.+|.+++.++.+.+.. +..+. ++.++++|+.+...-       ...-+
T Consensus         9 gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_           9 NKTIIVTGGNRG-IGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGV-KTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             TEEEEEETTTSH-HHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTC-CEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCC-ceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            789999996665 577777653  4789999999987766554443 44554 688889998764210       00115


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        87 ~iDilVnnA   95 (260)
T d1h5qa_          87 PISGLIANA   95 (260)
T ss_dssp             SEEEEEECC
T ss_pred             CCcEecccc
Confidence            799999884

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=82.44  E-value=0.61  Score=36.15  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=28.3

Q ss_pred             eEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHH
Q 022962          124 KLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEH  163 (289)
Q Consensus       124 ~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~  163 (289)
                      +|.=|  |.|..|+.+|..+ .+.+|+|+|++++.++.++.
T Consensus         2 kI~Vi--GlG~vGl~~a~~~a~g~~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVA--GSGYVGLSLGVLLSLQNEVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEE--CCSHHHHHHHHHHTTTSEEEEECSCHHHHHHHHT
T ss_pred             EEEEE--CCChhHHHHHHHHHCCCcEEEEECCHHHHHHHhh
Confidence            34455  5678888887543 46799999999998877653

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=82.21  E-value=4.6  Score=31.91  Aligned_cols=114  Identities=10%  Similarity=0.013  Sum_probs=61.0

Q ss_pred             CCeEEEEcCCC--ChHHHH----HHHHCCCCEEEE-EeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCce
Q 022962          122 NLKLVDVGTGA--GLPGLV----LAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYD  194 (289)
Q Consensus       122 ~~~VLDiGcG~--G~~~l~----la~~~p~~~V~~-iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD  194 (289)
                      ..+|-=||||.  |..+..    +....++.+++| +|.+.+.   +++.+++++...... ..|.+++-.    +...|
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~l~~----~~~iD   87 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKS---SLQTIEQLQLKHATG-FDSLESFAQ----YKDID   87 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHH---HHHHHHHTTCTTCEE-ESCHHHHHH----CTTCS
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHH---HHHHHHhccccccee-ecchhhccc----ccccc
Confidence            56899999997  334332    222346789886 6888765   455566777665544 356666533    24689


Q ss_pred             EEEEcCcc-cHHHHHHHHcc---ccccCeEEEEEEcC-CcHHHHHHHHHHHHHh
Q 022962          195 VAVARAVA-EMRILAEYCLP---LVRVGGLFVAAKGH-DPQEEVKNSERAVQLM  243 (289)
Q Consensus       195 ~V~sn~~~-~~~~ll~~~~~---~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~  243 (289)
                      +|+..... ........+.+   ..+.+=.++++++. ...++..++.+..++.
T Consensus        88 ~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~  141 (237)
T d2nvwa1          88 MIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQR  141 (237)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred             eeeccCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhc
Confidence            88865322 11222222111   11122245666653 3344555555544443

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=81.82  E-value=1.1  Score=36.20  Aligned_cols=76  Identities=14%  Similarity=0.017  Sum_probs=52.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  192 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~  192 (289)
                      ++.+|=-|.++| +|..+|+.+  .+++|+.+|.+++.++.+.+....  ..++.++.+|+.+...-.       ..-+.
T Consensus         6 gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   82 (251)
T d1zk4a1           6 GKVAIITGGTLG-IGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--PDQIQFFQHDSSDEDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--TTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC--CCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            788998897666 577776653  478999999999887766654432  236889999987643110       00147


Q ss_pred             ceEEEEcC
Q 022962          193 YDVAVARA  200 (289)
Q Consensus       193 fD~V~sn~  200 (289)
                      .|+++.|+
T Consensus        83 iDiLVnnA   90 (251)
T d1zk4a1          83 VSTLVNNA   90 (251)
T ss_dssp             CCEEEECC
T ss_pred             ceEEEecc
Confidence            89999884

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.31  E-value=3.7  Score=31.57  Aligned_cols=92  Identities=14%  Similarity=0.147  Sum_probs=58.4

Q ss_pred             CeEEEEcCCCChHHHHHHH--HCCCCEEEEEeCChHHHHHHHHHHHHc-------CC---------------CCEEEEec
Q 022962          123 LKLVDVGTGAGLPGLVLAI--ACPDWKVTLLESMNKRCVFLEHAVSLT-------QL---------------LNVQIVRG  178 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~--~~p~~~V~~iD~s~~~l~~a~~~~~~~-------~l---------------~ni~~~~~  178 (289)
                      .+|.=||+|+  .|..+|.  ...+.+|+.+|++++.++.+++.++..       +.               .++.+. .
T Consensus         5 kkvaViGaG~--mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~   81 (192)
T d1f0ya2           5 KHVTVIGGGL--MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-T   81 (192)
T ss_dssp             CEEEEECCSH--HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-S
T ss_pred             EEEEEECcCH--HHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-c
Confidence            4778888864  4444443  235789999999999998887765432       21               123332 2


Q ss_pred             cccccCCCCcCCCCceEEEEcCccc---HHHHHHHHccccccCeEEEE
Q 022962          179 RAETLGKDVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFVA  223 (289)
Q Consensus       179 d~~~~~~~~~~~~~fD~V~sn~~~~---~~~ll~~~~~~LkpgG~l~~  223 (289)
                      |..+..      ...|+|+=...++   -..+++++.+.++++-.|.-
T Consensus        82 d~~~a~------~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilas  123 (192)
T d1f0ya2          82 DAASVV------HSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS  123 (192)
T ss_dssp             CHHHHT------TSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEE
T ss_pred             hhHhhh------cccceehhhcccchhHHHHHHHHHhhhcccCceeec
Confidence            322211      3478988765444   36888888888888877653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.09  E-value=1.7  Score=35.10  Aligned_cols=78  Identities=17%  Similarity=0.084  Sum_probs=55.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHc-CCCCEEEEeccccccCCCC-------cCCC
Q 022962          122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLT-QLLNVQIVRGRAETLGKDV-------SFRE  191 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~-~l~ni~~~~~d~~~~~~~~-------~~~~  191 (289)
                      |+.+|=-|+++| +|..+|+.+  .+++|+.+|.+.+.++.+.+...+. +-.++.++..|+.+...-.       ..-+
T Consensus         3 GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           3 GKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            778888898776 577777654  5789999999998887776655443 2236888999987643100       0014


Q ss_pred             CceEEEEcC
Q 022962          192 QYDVAVARA  200 (289)
Q Consensus       192 ~fD~V~sn~  200 (289)
                      ..|+++.|+
T Consensus        82 ~iDilVnnA   90 (254)
T d2gdza1          82 RLDILVNNA   90 (254)
T ss_dssp             CCCEEEECC
T ss_pred             CcCeecccc
Confidence            789999984

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=81.07  E-value=0.62  Score=38.39  Aligned_cols=79  Identities=16%  Similarity=0.095  Sum_probs=51.8

Q ss_pred             CEEEEeccccccCCCCcCCCCceEEEEcC------------------cccHHHHHHHHccccccCeEEEEEEcCC-----
Q 022962          172 NVQIVRGRAETLGKDVSFREQYDVAVARA------------------VAEMRILAEYCLPLVRVGGLFVAAKGHD-----  228 (289)
Q Consensus       172 ni~~~~~d~~~~~~~~~~~~~fD~V~sn~------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~-----  228 (289)
                      +-+++++|..++-.. ..++++|+|+...                  ...+...+++++++|+|+|.+++..+..     
T Consensus        12 ~~~l~~GD~le~l~~-l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~   90 (320)
T d1booa_          12 NGSMYIGDSLELLES-FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGV   90 (320)
T ss_dssp             SEEEEESCHHHHGGG-SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTE
T ss_pred             CCEEEehhHHHHHhh-CccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccchhhccc
Confidence            457889998874332 1257899999973                  1235678999999999999999865432     


Q ss_pred             ---cHHHHHHHHHHHHHhCCeEeEEe
Q 022962          229 ---PQEEVKNSERAVQLMGASLLQLC  251 (289)
Q Consensus       229 ---~~~ei~~~~~~l~~~g~~~~~~~  251 (289)
                         .......+.......|+......
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (320)
T d1booa_          91 PARSIYNFRVLIRMIDEVGFFLAEDF  116 (320)
T ss_dssp             EEECCHHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccccchhHHHHHHHHHhcCceEeeee
Confidence               12223333445556777655544

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=80.46  E-value=4.7  Score=29.71  Aligned_cols=108  Identities=13%  Similarity=0.110  Sum_probs=62.8

Q ss_pred             eEEEEcCCC-ChH-HHHHHHHCCCCEEEE-EeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962          124 KLVDVGTGA-GLP-GLVLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  200 (289)
Q Consensus       124 ~VLDiGcG~-G~~-~l~la~~~p~~~V~~-iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~  200 (289)
                      +|.=||||. |.- -+......++.++++ +|.+++.   +++.++.++..   + ..+.+++.      ...|+|+...
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~---~~~~~~~~~~~---~-~~~~~~l~------~~~D~V~I~t   69 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAK---ALPICESWRIP---Y-ADSLSSLA------ASCDAVFVHS   69 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTT---HHHHHHHHTCC---B-CSSHHHHH------TTCSEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHh---hhhhhhccccc---c-cccchhhh------hhcccccccc
Confidence            567789875 321 233344567778775 5777755   33444455542   2 23444432      3478887543


Q ss_pred             -cccHHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHhCCeE
Q 022962          201 -VAEMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGASL  247 (289)
Q Consensus       201 -~~~~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~g~~~  247 (289)
                       ......++   ..+|+.|=.++++++. ...++..++.+..++.|..+
T Consensus        70 p~~~h~~~~---~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~  115 (164)
T d1tlta1          70 STASHFDVV---STLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL  115 (164)
T ss_dssp             CTTHHHHHH---HHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             cchhccccc---cccccccceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence             22223333   3456777788888753 45777888888888888643

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.12  E-value=6.9  Score=28.62  Aligned_cols=111  Identities=19%  Similarity=0.238  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCCChHHHH----HHHHCCCCEEEEEeCChHHHHH-HHHHHHH--cCCCCEEEEeccccccCCCCcCCCCce
Q 022962          122 NLKLVDVGTGAGLPGLV----LAIACPDWKVTLLESMNKRCVF-LEHAVSL--TQLLNVQIVRGRAETLGKDVSFREQYD  194 (289)
Q Consensus       122 ~~~VLDiGcG~G~~~l~----la~~~p~~~V~~iD~s~~~l~~-a~~~~~~--~~l~ni~~~~~d~~~~~~~~~~~~~fD  194 (289)
                      +.+|-=||+  |..|..    ++...-..++..+|++++.+.- +......  ....++.+..+|.+++.       ..|
T Consensus         6 ~~KI~IiGa--G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~-------daD   76 (148)
T d1ldna1           6 GARVVVIGA--GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCR-------DAD   76 (148)
T ss_dssp             SCEEEEECC--SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTT-------TCS
T ss_pred             CCeEEEECc--CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhc-------cce
Confidence            567888887  444433    3433334589999999876321 1111111  11224666667776652       369


Q ss_pred             EEEEcC-----------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCe
Q 022962          195 VAVARA-----------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS  246 (289)
Q Consensus       195 ~V~sn~-----------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~  246 (289)
                      +|+..+                 ..-++.+.+.+.+. .|+|.+++..  ++-..+..+  .++..||.
T Consensus        77 vvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivvt--NPvd~~t~~--~~k~sg~p  140 (148)
T d1ldna1          77 LVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVAT--NPVDILTYA--TWKFSGLP  140 (148)
T ss_dssp             EEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECS--SSHHHHHHH--HHHHHTCC
T ss_pred             eEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEec--CccHHHHHH--HHHHHCcC
Confidence            988652                 11234555555543 4899887754  344444443  23455664

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.03  E-value=1.2  Score=35.83  Aligned_cols=75  Identities=17%  Similarity=0.113  Sum_probs=53.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHC-----CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC---------c
Q 022962          123 LKLVDVGTGAGLPGLVLAIAC-----PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV---------S  188 (289)
Q Consensus       123 ~~VLDiGcG~G~~~l~la~~~-----p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~---------~  188 (289)
                      ++||=-|+.+| +|..+|+.+     .+.+|++++.+++.++.+++..+..  .++.++..|+.+...-.         .
T Consensus         3 KtilITGas~G-IG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~   79 (248)
T d1snya_           3 NSILITGCNRG-LGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIEGVT   79 (248)
T ss_dssp             SEEEESCCSSH-HHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCH-HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcC--CcEEEEEEEeccHHHHHHHHhhhHHHh
Confidence            36888888777 588888543     4689999999998877776655543  37999999987643210         0


Q ss_pred             CCCCceEEEEcC
Q 022962          189 FREQYDVAVARA  200 (289)
Q Consensus       189 ~~~~fD~V~sn~  200 (289)
                      ..+..|+++.|+
T Consensus        80 ~~~~iDiLvnNA   91 (248)
T d1snya_          80 KDQGLNVLFNNA   91 (248)
T ss_dssp             GGGCCSEEEECC
T ss_pred             hcCCcceEEeec
Confidence            124689999983