Citrus Sinensis ID: 022969


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MASLAQAPSAMSTVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWEPSPASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTDSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG
ccccccccccccccEEEccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccEEccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccc
cccHcccccHHHHEcHHHHcccccEEcccccccccEEcccEEEcccEEEEccccccccccccccccccccccEccccccEEEEcccccccccccccccccEEcccccccEEEEEEcHHHHHcHHHHHHHHHccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
maslaqapsamSTVGVlwtlprsmrlvnfksvipvvtspcthvkhsplcctkltpwepspashaptddadykiLNKNSNIfetlssdntaeapatkteevtdannqplvqlqflkwpmwllgpcillgtdscarsknttracnskppfsyKFWNMVANTTGFIIPLLMlfgsqkgflqpqlpfipFAVLLGPYLLLLSIQILTEMLTwhwqspvwlvtpVVYESYRVLQLMRGLKLgaelsapaWIVHTVRGLVCWWILILGVQLMRVAWFAgftsqarrqqspasadg
maslaqapsamstvGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWEPSPASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKteevtdannqPLVQLQFLKWPMWLLGPCILLGTDSCARSKNTTracnskppfsYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSqarrqqspasadg
MASLAQAPSAMSTVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWEPSPASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTDSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG
************TVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPW**************************************************PLVQLQFLKWPMWLLGPCILLGTDSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFT**************
********SAMSTVGVLWTL**************VVTSPCTHVKHSPLCCTKLTPWEPSPASHAPTDDADYKILNKNSNIFETL*********************QPLVQLQFLKWPMWLLGPCILLGTDSCA*************PFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGF***************
***********STVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWE********TDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTDSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFT**************
****AQAPSAMSTVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWEPSPASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTDSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQ************
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
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MASLAQAPSAMSTVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWEPSPASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTDSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query289
296089209 433 unnamed protein product [Vitis vinifera] 1.0 0.667 0.596 1e-106
118489441332 unknown [Populus trichocarpa x Populus d 1.0 0.870 0.584 1e-106
359489458332 PREDICTED: uncharacterized protein LOC10 1.0 0.870 0.596 1e-105
356496330343 PREDICTED: uncharacterized protein LOC10 1.0 0.842 0.548 2e-90
255541184342 conserved hypothetical protein [Ricinus 0.986 0.833 0.558 7e-89
449469343344 PREDICTED: uncharacterized protein LOC10 0.837 0.703 0.527 5e-84
357469915344 hypothetical protein MTR_4g027070 [Medic 0.858 0.720 0.551 3e-82
42572745 404 uncharacterized protein [Arabidopsis tha 0.813 0.581 0.489 5e-73
42570499329 uncharacterized protein [Arabidopsis tha 0.809 0.711 0.491 2e-72
224136207157 predicted protein [Populus trichocarpa] 0.539 0.993 0.794 7e-70
>gi|296089209|emb|CBI38912.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/332 (59%), Positives = 231/332 (69%), Gaps = 43/332 (12%)

Query: 1   MASLAQAPSAMSTVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWEPSP 60
           MASLAQAPS M++V V     R M+L      +   T P   +KH P+CCTKLTPWEPSP
Sbjct: 93  MASLAQAPSTMASVTVPNVHHRGMKLFQPSISLHGFTFPHIRIKHPPVCCTKLTPWEPSP 152

Query: 61  ASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWL 120
            +++PTD+     L   SNIFETL+SD+TAEAP T TEE+   +NQ   QLQFLKWPMWL
Sbjct: 153 VTYSPTDEKGSDFLRGTSNIFETLNSDDTAEAPVTNTEELIHTSNQSSGQLQFLKWPMWL 212

Query: 121 LGPCILLGT-------------------------------------------DSCARSKN 137
           LGP +LL T                                           D+CAR KN
Sbjct: 213 LGPSLLLATGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNLGATLFLLMADACARPKN 272

Query: 138 TTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLL 197
             +  NSK PFSY+FWN+VA  TGF++PL++ FGSQ GF QPQLPFIPFAVL+GPYLLLL
Sbjct: 273 LAQPLNSKAPFSYQFWNVVATITGFVVPLIVFFGSQNGFFQPQLPFIPFAVLMGPYLLLL 332

Query: 198 SIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWW 257
           S+QILTEMLTWHWQSPVWLVTPVVYE+YRVLQLMRGLKLGAELSAPAW++HTVRGLVCWW
Sbjct: 333 SVQILTEMLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLGAELSAPAWMMHTVRGLVCWW 392

Query: 258 ILILGVQLMRVAWFAGFTSQARRQQSPASADG 289
           +LILG+Q+MRVAWFAGFT+ A  Q+S   ADG
Sbjct: 393 VLILGMQVMRVAWFAGFTAGAWPQKSSTLADG 424




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489441|gb|ABK96523.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|359489458|ref|XP_003633924.1| PREDICTED: uncharacterized protein LOC100854105 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356496330|ref|XP_003517021.1| PREDICTED: uncharacterized protein LOC100779126 [Glycine max] Back     alignment and taxonomy information
>gi|255541184|ref|XP_002511656.1| conserved hypothetical protein [Ricinus communis] gi|223548836|gb|EEF50325.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449469343|ref|XP_004152380.1| PREDICTED: uncharacterized protein LOC101219687 [Cucumis sativus] gi|449528182|ref|XP_004171085.1| PREDICTED: uncharacterized LOC101219687 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357469915|ref|XP_003605242.1| hypothetical protein MTR_4g027070 [Medicago truncatula] gi|355506297|gb|AES87439.1| hypothetical protein MTR_4g027070 [Medicago truncatula] Back     alignment and taxonomy information
>gi|42572745|ref|NP_974468.1| uncharacterized protein [Arabidopsis thaliana] gi|332646561|gb|AEE80082.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42570499|ref|NP_850729.2| uncharacterized protein [Arabidopsis thaliana] gi|7288007|emb|CAB81845.1| putative protein [Arabidopsis thaliana] gi|332646563|gb|AEE80084.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224136207|ref|XP_002326805.1| predicted protein [Populus trichocarpa] gi|222835120|gb|EEE73555.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query289
TAIR|locus:2103326404 AT3G60590 [Arabidopsis thalian 0.574 0.410 0.652 2.2e-76
TAIR|locus:2103326 AT3G60590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 615 (221.5 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
 Identities = 111/170 (65%), Positives = 137/170 (80%)

Query:   121 LGPCI-LLGTDSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFL-- 177
             LG  + LL  DSCAR K+ +++CNSKPPFSYKFWNM +   GF++P+L+LFGSQ G L  
Sbjct:   231 LGATLFLLMADSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLAS 290

Query:   178 -QPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKL 236
              QPQ+PF+  AV+L PY +LL++Q LTE+LTWHWQSPVWLVTPVVYE+YR+LQLMRGL L
Sbjct:   291 LQPQIPFLSSAVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTL 350

Query:   237 GAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPAS 286
              AE++AP W+VH +RGLV WW+LILG+QLMRVAWFAGF S+    Q P S
Sbjct:   351 SAEVNAPVWVVHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQPQS 400


GO:0005739 "mitochondrion" evidence=ISM
GO:0009706 "chloroplast inner membrane" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009536 "plastid" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00