Citrus Sinensis ID: 022974

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MNGTTTQESNPSHHQTSLSSTNQEMQSHQAAGPSSSSGPASTASAEKWGTHVMGTPAAPTCHPDNKKAALWGAGAAGDNRAQYNNHHHPYLQYSPVERPSGSPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFVATGIAVQPNGA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHHccEEEEcccccccEEEEEEccEEEEEccccccEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEEEccHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccHHHccccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHEEccccccEEEEEEEEccEEEEEccccEEEEcccccEEEEEEEEEEEHHHHccccccccccccccEEEEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHcccccEEccccc
Coil and Loop (DISEMBL)
mngtttqesnpshhqtslsstnqemqshqaagpssssgpastasaekwgthvmgtpaaptchpdnkkaalwgagaagdnraqynnhhhpylqyspverpsgspmeSILNVFNSWSNKAETLANNIWhnlktnssvsEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLststgpvagtLYLSNVHVafcsdrplsftapsgqktWSYYKVMLPlamigainpvimrensseKYIQIVTIDghefwfmgfvNYDKATRHLSESISNFVATGiavqpnga
Flexible Loop (DISEMBL)
mngtttqesnpshhqTSLSSTNQEMQSHQaagpssssgpASTASAEKWGTHVMGTPAAPTCHPDNKKAALWGAGAAGDNRAQYNNHHHPYLQYSPVERPSGSPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNfvatgiavqpnga
Low Complexity Region (SEG)
MNGTTTQESNPSHHQTSLSSTNQEMQSHQaagpssssgpastasaEKWGTHVMGTPAAPTCHPDNKKaalwgagaagDNRAQYNNHHHPYLQYSPVERPSGSPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFVATGIAVQPNGA
Disordered region (IsUnstruct)
********************************************************************ALWGAGA**************YL***************ILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFVATGIA******
Disordered Region (DISOPRED)
****************************************************************************************************************SWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLA******************IQIVTIDGHEFWFMGFVNYDKATRHLSES****************
Disordered Region (DISEMBL)
*********************************************EKWGTHVMGTPAAPTCHPDNKKAALWGAGAAGDNRAQYNNHHHPYLQYSPVERPSGSPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFVATGIAVQPNGA
Disordered Region (DISPRO)
*****************************************************************************************YL*YSPVERPSGSPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFVATGI*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNGTTTQESNPSHHQTSLSSTNQEMQSHQAAGPSSSSGPASTASAEKWGTHVMGTPAAPTCHPDNKKAALWGAGAAGDNRAQYNNHHHPYLQYSPVERPSGSPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFVATGIAVQPNGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
Q9LYV6	272	GEM-like protein 5 OS=Ara	yes	no	0.837	0.889	0.602	3e-90
Q8S8F8	299	GLABRA2 expression modula	no	no	0.643	0.622	0.446	1e-45
Q9SE96	259	GEM-like protein 1 OS=Ara	no	no	0.629	0.702	0.461	4e-45
Q9M063	239	Putative GEM-like protein	no	no	0.570	0.690	0.393	3e-34
Q9FMW4	219	Putative GEM-like protein	no	no	0.553	0.730	0.375	2e-31
Q9FMW6	218	GEM-like protein 6 OS=Ara	no	no	0.557	0.738	0.391	2e-31
Q9FTA0	222	GEM-like protein 4 OS=Ara	no	no	0.553	0.720	0.368	6e-31
Q9FMW5	210	GEM-like protein 7 OS=Ara	no	no	0.550	0.757	0.377	2e-30
Q9M122	233	GEM-like protein 2 OS=Ara	no	no	0.664	0.824	0.343	4e-28

>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1

 Score =  332 bits (850), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 153/254 (60%), Positives = 196/254 (77%), Gaps = 12/254 (4%)

Query: 25  MQSHQAAGPSSSSGPASTASAEKWGTHVMGTPAAPTCHPDNKKAALWGAGAAGDNRAQYN 84
           +++     PSSSS        +KWGTHVMG PAAP  HPDN++AA W    AGDN+    
Sbjct: 21  LETEHQPEPSSSS-----PDQKKWGTHVMGAPAAPVAHPDNQQAAAW---VAGDNQ---Q 69

Query: 85  NHHHPYLQYSPVERPS-GSPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKM 143
             + PY+ YSPVE P+  +P+E ++ +F++WS KAET+A N+WHNLKT  S+SE AWGK+
Sbjct: 70  TQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKV 129

Query: 144 NLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDR 203
           NLTAKAI  GGFE++++Q F T  NETLKKTFACYLST+TGPVAGT+YLSN  VAFCSDR
Sbjct: 130 NLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDR 189

Query: 204 PLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNY 263
           PL FTAPSGQ++WSYY+V++PLA +  +NPV+++E   EKYIQ+ T+DGH+FWFMGFVNY
Sbjct: 190 PLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNY 249

Query: 264 DKATRHLSESISNF 277
           +KAT HL  S+S+F
Sbjct: 250 EKATHHLLTSVSDF 263

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1

 Score =  183 bits (465), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/197 (44%), Positives = 122/197 (61%), Gaps = 11/197 (5%)

Query: 88  HPYLQYSPVERPSGS---PMESILNVFNSW-------SNKAETLANNIWHNLKTNSSVSE 137
           +PY+  SP E    S    ME++  V   W       + K E+LA N W +L+T  S ++
Sbjct: 96  NPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFAD 155

Query: 138 AAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHV 197
           AA G++  + K    GG+E I++QTF T   E L  +FACYLSTS GPV G LY+S+  +
Sbjct: 156 AAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKL 215

Query: 198 AFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWF 257
           A+CSD PLS+     Q  WSYYKV++PL  + A+NP     N +EKYIQ++++D HEFWF
Sbjct: 216 AYCSDNPLSYKN-GDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWF 274

Query: 258 MGFVNYDKATRHLSESI 274
           MGF+NYD A   L +S+
Sbjct: 275 MGFLNYDGAVTSLQDSL 291

Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1

 Score =  181 bits (460), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 90/195 (46%), Positives = 125/195 (64%), Gaps = 13/195 (6%)

Query: 88  HPYLQYSPVERPSGSPMESILNVFNSW-------SNKAETLANNIWHNLKTNSSVSEAAW 140
           +PY+  SP  R   + M+S+ +    W       + KAE LA N W +LKT  SV++AA 
Sbjct: 65  NPYVSPSPAPR---NTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAV 121

Query: 141 GKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFC 200
            ++    K +  GG+E ++KQTF    +E L KT+ACYLSTS GPV G +YLS   +AF 
Sbjct: 122 SRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFS 181

Query: 201 SDRPLSFTAPSGQKT-WSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMG 259
           SD PLS+    G++T WSYYKV+LP   + A+NP   R N+S+KYIQ+++ID HEFWFMG
Sbjct: 182 SDNPLSYK--EGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMG 239

Query: 260 FVNYDKATRHLSESI 274
           FV Y+ A + L E++
Sbjct: 240 FVTYESAVKSLQEAV 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/198 (39%), Positives = 111/198 (56%), Gaps = 33/198 (16%)

Query: 88  HPYLQYSPVERPSGS---PMESILNVFNSWSN-------KAETLANNIW-HNLKTNSSVS 136
           +PY+  +P E    S    MES+  V   W         KAE+LA N W H L+      
Sbjct: 55  NPYVARAPTETSDASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR------ 108

Query: 137 EAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVH 196
            AA G++  + K +  GG+E I++QTF T   E L+ +FACYLSTS GPV G LY+S   
Sbjct: 109 -AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAK 167

Query: 197 VAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFW 256
           +A+CSD  L               V++PL  + ++NP I   N +EKYIQ++++D HEFW
Sbjct: 168 LAYCSDTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFW 212

Query: 257 FMGFVNYDKATRHLSESI 274
           FMGF+NY+ A   L +++
Sbjct: 213 FMGFLNYEGAVTSLQDTL 230

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1

 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 96/160 (60%)

Query: 116 NKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTF 175
            K ++  N +    K    ++E    K++L A+ ++ GG E IYK+ F     E L K +
Sbjct: 55  KKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAY 114

Query: 176 ACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVI 235
            CYLST+ GP+AG L++S+  +AFCS+R +   +P G+    +YKV +PL  I  +N   
Sbjct: 115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQ 174

Query: 236 MRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESIS 275
                S+KY+++VT+DG +FWFMGF++Y KA   L +++S
Sbjct: 175 NTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQALS 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2

 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 96/161 (59%)

Query: 116 NKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTF 175
            K ++  N      K    ++E    K++L AK ++ GG E IYK+ F     E L K +
Sbjct: 55  KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAY 114

Query: 176 ACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVI 235
            CYLST+ GP+AG L++S+  +AFCS+R +   +P G  +  +YKV +PL  I  +N   
Sbjct: 115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQ 174

Query: 236 MRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISN 276
             +  S+KY++IVTID  +FWFMGFV+Y KA   L ++++N
Sbjct: 175 NTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKALNN 215

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1

 Score =  134 bits (338), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 96/160 (60%)

Query: 116 NKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTF 175
            K +   N +    K    ++E    K++L A+ ++ GG E I+K+ F   + E L K +
Sbjct: 54  KKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMY 113

Query: 176 ACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVI 235
            CYLST+ GP+AG L++S+  +AFCS+R +   +P G     +YKV +PL  I  +N   
Sbjct: 114 QCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQ 173

Query: 236 MRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESIS 275
             +  S+KY+++VT+DG +FWFMGF++Y KA   L +++S
Sbjct: 174 NTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKALS 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 95/159 (59%)

Query: 116 NKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTF 175
            K ++  N      K    ++E    K++L AK ++ GG E IYK+ F     E L K +
Sbjct: 47  KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAY 106

Query: 176 ACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVI 235
            CYLST+ G +AG L++S+  +AFCS+R +  T+P G  T  +YKV +PL  I  +N   
Sbjct: 107 QCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQ 166

Query: 236 MRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESI 274
             +  S++Y+++VT+D ++FWFMGFV+Y KA   L +++
Sbjct: 167 NTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKAL 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1

 Score =  125 bits (313), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 111/204 (54%), Gaps = 12/204 (5%)

Query: 82  QYNNHHHPYLQY-SPVERPSGSPMESILNVFNSW-------SNKAETLANNIWHNLKTNS 133
           +Y+N   PY+   SP         + +L V N         + KAE L   +  +LK + 
Sbjct: 26  RYDN---PYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSP 82

Query: 134 SVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLS 193
           S+S+AA  +++   K I  GG E ++++ F     E L  +F CY+ST++GPV G +Y+S
Sbjct: 83  SISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYIS 142

Query: 194 NVHVAFCSDRPLSF-TAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDG 252
           N  +AFCSD  +   ++  G    +YYKV++    I +I+        SE+Y+ +VT DG
Sbjct: 143 NRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDG 202

Query: 253 HEFWFMGFVNYDKATRHLSESISN 276
            EFWFMGFV+Y  A   L++++ N
Sbjct: 203 FEFWFMGFVSYIDAFNCLNKALLN 226

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
225451567	331	PREDICTED: GEM-like protein 5-like [Viti	0.961	0.839	0.689	1e-110
255543613	310	conserved hypothetical protein [Ricinus	0.989	0.922	0.680	1e-110
296082291	239	unnamed protein product [Vitis vinifera]	0.795	0.962	0.762	1e-104
357508343	288	GEM-like protein [Medicago truncatula] g	0.833	0.836	0.716	1e-101
363807420	283	uncharacterized protein LOC100811963 [Gl	0.899	0.918	0.669	2e-99
356561347	272	PREDICTED: GEM-like protein 5-like [Glyc	0.851	0.904	0.674	7e-99
224060317	291	predicted protein [Populus trichocarpa]	0.965	0.958	0.650	8e-99
225468805	285	PREDICTED: GEM-like protein 5 [Vitis vin	0.813	0.824	0.697	9e-97
388522585	291	unknown [Lotus japonicus]	0.830	0.824	0.688	3e-93
388519425	291	unknown [Lotus japonicus]	0.830	0.824	0.684	1e-92

>gi|225451567|ref|XP_002274922.1| PREDICTED: GEM-like protein 5-like [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/296 (68%), Positives = 238/296 (80%), Gaps = 18/296 (6%)

Query: 5   TTQESNPSHHQTSLSSTN------QEMQSHQAAGPSSSSGPASTA--SAEKWGTHVMGTP 56
           TT E       TSL S++      +E Q H  AGPSSS+ P      +AEKWGT +MG P
Sbjct: 37  TTLEETAHQPLTSLPSSSPQQVNPEEAQPHHQAGPSSSAPPVPPCKENAEKWGTQIMGPP 96

Query: 57  AAPTCHPDNKKAALWGAGAAGDNRAQYNNHHHPYLQYSPVERPSGSPMESILNVFNSWSN 116
           A PTCHPDNKKAALWGA     N   ++    PYLQY+P+E+PS SPMES+L++FNSWSN
Sbjct: 97  AVPTCHPDNKKAALWGAAHDQQNNHHHH----PYLQYNPIEKPSSSPMESVLHMFNSWSN 152

Query: 117 KAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFA 176
           KAE+ ANNIWHNLKT  SVS+AAWGK+NLTAKAI GGGFE++YKQTFATH +E LKK+FA
Sbjct: 153 KAESTANNIWHNLKTGPSVSKAAWGKVNLTAKAITGGGFESLYKQTFATHPSEKLKKSFA 212

Query: 177 CYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIM 236
           CYLSTSTGPVAGTLYLSN+HVAFCSDRPLSFTAPSGQ+TWSYYKVM+PL+ IG INPVIM
Sbjct: 213 CYLSTSTGPVAGTLYLSNIHVAFCSDRPLSFTAPSGQETWSYYKVMVPLSKIGTINPVIM 272

Query: 237 R------ENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFVATGIAVQP 286
           R      EN SE+YIQ VT+DGH+FWFMGFVNYDKA++HL+ES++NF+ATGIAVQP
Sbjct: 273 RENPSENENPSERYIQTVTVDGHDFWFMGFVNYDKASQHLTESMTNFIATGIAVQP 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543613|ref|XP_002512869.1| conserved hypothetical protein [Ricinus communis] gi|223547880|gb|EEF49372.1| conserved hypothetical protein [Ricinus communis]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/291 (68%), Positives = 236/291 (81%), Gaps = 5/291 (1%)

Query: 1   MNGTTTQESNPSHH-----QTSLSSTNQEMQSHQAAGPSSSSGPASTASAEKWGTHVMGT 55
           ++  T Q+ NP +        S SS +QE + HQ++G SSSS     +  + WGTHVMG 
Sbjct: 17  ISSPTVQDENPFYQAMPPPPASSSSLHQEAEHHQSSGTSSSSTQQPPSDEKYWGTHVMGI 76

Query: 56  PAAPTCHPDNKKAALWGAGAAGDNRAQYNNHHHPYLQYSPVERPSGSPMESILNVFNSWS 115
           PA PTCHPDNKKAAL+G      +  Q    HHPYLQYSPV++PS SP+ESILN FN+WS
Sbjct: 77  PAVPTCHPDNKKAALFGGSGGDGDDDQAQYSHHPYLQYSPVDKPSSSPVESILNTFNTWS 136

Query: 116 NKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTF 175
            K ET+A+NIWHNL+TNSSVSEAAWGKMNLTAKAI GGGFE++YKQTF T+ NE LKK F
Sbjct: 137 KKTETMAHNIWHNLRTNSSVSEAAWGKMNLTAKAITGGGFESLYKQTFTTYPNEKLKKRF 196

Query: 176 ACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVI 235
           ACYLSTSTGPV+GTLYLS++H AFCSDRPLSFTAPSGQ TWSYYK+M+PL+ IGAINPV+
Sbjct: 197 ACYLSTSTGPVSGTLYLSDIHAAFCSDRPLSFTAPSGQLTWSYYKIMIPLSKIGAINPVV 256

Query: 236 MRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFVATGIAVQP 286
           MR+N+SEKYIQIVT+DGH+FWFMGFVNY+KA+ HL+ES+SNFV+ GIAV P
Sbjct: 257 MRDNASEKYIQIVTVDGHDFWFMGFVNYEKASLHLTESLSNFVSPGIAVHP 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082291|emb|CBI21296.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/240 (76%), Positives = 209/240 (87%), Gaps = 10/240 (4%)

Query: 53  MGTPAAPTCHPDNKKAALWGAGAAGDNRAQYNNHHHPYLQYSPVERPSGSPMESILNVFN 112
           MG PA PTCHPDNKKAALWGA     N       HHPYLQY+P+E+PS SPMES+L++FN
Sbjct: 1   MGPPAVPTCHPDNKKAALWGAAHDQQNNHH----HHPYLQYNPIEKPSSSPMESVLHMFN 56

Query: 113 SWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLK 172
           SWSNKAE+ ANNIWHNLKT  SVS+AAWGK+NLTAKAI GGGFE++YKQTFATH +E LK
Sbjct: 57  SWSNKAESTANNIWHNLKTGPSVSKAAWGKVNLTAKAITGGGFESLYKQTFATHPSEKLK 116

Query: 173 KTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAIN 232
           K+FACYLSTSTGPVAGTLYLSN+HVAFCSDRPLSFTAPSGQ+TWSYYKVM+PL+ IG IN
Sbjct: 117 KSFACYLSTSTGPVAGTLYLSNIHVAFCSDRPLSFTAPSGQETWSYYKVMVPLSKIGTIN 176

Query: 233 PVIMR------ENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFVATGIAVQP 286
           PVIMR      EN SE+YIQ VT+DGH+FWFMGFVNYDKA++HL+ES++NF+ATGIAVQP
Sbjct: 177 PVIMRENPSENENPSERYIQTVTVDGHDFWFMGFVNYDKASQHLTESMTNFIATGIAVQP 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508343|ref|XP_003624460.1| GEM-like protein [Medicago truncatula] gi|355499475|gb|AES80678.1| GEM-like protein [Medicago truncatula]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/243 (71%), Positives = 202/243 (83%), Gaps = 2/243 (0%)

Query: 43  ASAEKWGTHVMGTPAAPTCHPDNKKAALWGAGAAGDNRAQ--YNNHHHPYLQYSPVERPS 100
           A+ E WGTH+MG PA P+ HPDNKKAAL  A A G  + Q  Y    HPY+Q+SPV++PS
Sbjct: 41  ATTENWGTHMMGAPAVPSSHPDNKKAALQTASADGQGQPQVHYYQQDHPYVQHSPVDKPS 100

Query: 101 GSPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYK 160
            SPMESIL++F+SWS KAE  ANNIWHNLKT  SVS AA GKMNLT KAI  GGFE++YK
Sbjct: 101 SSPMESILHMFDSWSKKAEATANNIWHNLKTGPSVSSAAMGKMNLTVKAISEGGFESLYK 160

Query: 161 QTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYK 220
           Q F T+ NE LKKTFACYLST+TGPVAGTLYLS++H+AFCSDRPLSFTAPSGQ TWSYYK
Sbjct: 161 QIFTTYPNEKLKKTFACYLSTTTGPVAGTLYLSDIHLAFCSDRPLSFTAPSGQVTWSYYK 220

Query: 221 VMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFVAT 280
           VM+PL  IG +NPVIMREN SE+YIQIVT+DGH+FWFMGFVNYDKA ++LSE IS+FV +
Sbjct: 221 VMVPLGKIGTVNPVIMRENHSERYIQIVTVDGHDFWFMGFVNYDKAVKNLSEGISHFVVS 280

Query: 281 GIA 283
           G+A
Sbjct: 281 GVA 283

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807420|ref|NP_001242640.1| uncharacterized protein LOC100811963 [Glycine max] gi|255647317|gb|ACU24125.1| unknown [Glycine max]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 176/263 (66%), Positives = 210/263 (79%), Gaps = 3/263 (1%)

Query: 22  NQEMQSHQAAGPSSSSGPASTASAEKWGTHVMGTPAAPTCHPDNKKAALWGAGAAGDNRA 81
           NQ     Q A  SSSS P      E WGTH+MGTPA P+ HPDNKKAAL  +G     + 
Sbjct: 10  NQSFPEAQGASSSSSSPP--NVGTENWGTHIMGTPAVPSSHPDNKKAAL-QSGQPQPVQY 66

Query: 82  QYNNHHHPYLQYSPVERPSGSPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWG 141
            ++ H HPY+Q+SPV++PS SPMESILN+F+SWS KAE  A+N+WHNLKT  SVS AA G
Sbjct: 67  YHDQHQHPYVQHSPVDKPSNSPMESILNMFDSWSKKAEATAHNVWHNLKTGPSVSSAALG 126

Query: 142 KMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCS 201
           KMNLT KAI  GGFE++YKQ F T+ NE LKK+FACYLSTSTGPVAGTLYLSN+HVAFCS
Sbjct: 127 KMNLTVKAISEGGFESLYKQAFTTYPNEKLKKSFACYLSTSTGPVAGTLYLSNIHVAFCS 186

Query: 202 DRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFV 261
           DRPL FTAPSGQ+TW+YYKVM+PL  +G +NPV MREN SEKYIQ+VT++GH+FWFMGFV
Sbjct: 187 DRPLCFTAPSGQETWTYYKVMVPLGKVGVVNPVTMRENPSEKYIQVVTVEGHDFWFMGFV 246

Query: 262 NYDKATRHLSESISNFVATGIAV 284
           N+DKA +++SE IS+FVA G+AV
Sbjct: 247 NFDKAVKNISEGISHFVAPGVAV 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561347|ref|XP_003548944.1| PREDICTED: GEM-like protein 5-like [Glycine max]

 Score =  366 bits (939), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 170/252 (67%), Positives = 205/252 (81%), Gaps = 6/252 (2%)

Query: 33  PSSSSGPASTASAEKWGTHVMGTPAAPTCHPDNKKAALWGAGAAGDNRAQYNNHHHPYLQ 92
           P +SS P      E WGTH+MGTPA P+ HPDNKKAAL         +  ++ HHHPY+Q
Sbjct: 13  PEASSPPK--VGTENWGTHIMGTPAIPSSHPDNKKAALQPQPV----QYYHDQHHHPYVQ 66

Query: 93  YSPVERPSGSPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKG 152
           +S +++PS SPMESILN+F+SWS KAE  A+N+WHNLKT  SVS AA GKMNLT KAI  
Sbjct: 67  HSTLDKPSNSPMESILNMFDSWSRKAEATAHNVWHNLKTGPSVSSAALGKMNLTVKAISE 126

Query: 153 GGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSG 212
           GGFE++YKQTF T+ NE LKK+FACYLSTSTGPVAGTLYLSN+HVAFCSDRPL FTAPSG
Sbjct: 127 GGFESLYKQTFTTYPNEKLKKSFACYLSTSTGPVAGTLYLSNIHVAFCSDRPLCFTAPSG 186

Query: 213 QKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSE 272
           Q+TW+YYKVM+PL  +G +NPV MR+N SEKYIQ+VT+DGH+FWFMGFVN+DKA +++SE
Sbjct: 187 QETWTYYKVMVPLGKVGMVNPVTMRDNPSEKYIQVVTVDGHDFWFMGFVNFDKAVKNISE 246

Query: 273 SISNFVATGIAV 284
            IS+FVA G+AV
Sbjct: 247 GISHFVAPGVAV 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060317|ref|XP_002300139.1| predicted protein [Populus trichocarpa] gi|222847397|gb|EEE84944.1| predicted protein [Populus trichocarpa]

 Score =  365 bits (938), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 192/295 (65%), Positives = 224/295 (75%), Gaps = 16/295 (5%)

Query: 1   MNGTTTQESNPSHHQTSLSSTNQEMQSHQAAGPS--------SSSGPASTASAEKWGTHV 52
           MNGT  QES P +   S   + +    H+    S        S S P    ++EKWGT V
Sbjct: 1   MNGTN-QESQPFYPSISSPMSKEASPFHRTMSDSLPSTSRHSSFSSPPYDENSEKWGTRV 59

Query: 53  MGTPAAPTCHPDNKKAALWGAGAAGDNRAQYNNHHHPYLQYSPVERPSGSPMESILNVFN 112
           MG PA P+CHPDNKKAALWGA    D+ A+    HHPYLQYSP+E+ S S  ESIL VFN
Sbjct: 60  MGNPAVPSCHPDNKKAALWGAT---DDEAK--KFHHPYLQYSPIEKSSRSSKESILQVFN 114

Query: 113 SWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTF-ATHQNETL 171
           SW  KA+T+A NIWHNL+TNSSV  AAWGK+NLTAKA+ GGGFE +YKQTF +T+ NE L
Sbjct: 115 SWGTKADTIAQNIWHNLRTNSSVPGAAWGKVNLTAKALTGGGFEALYKQTFTSTNPNEKL 174

Query: 172 KKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAI 231
           KKTFACYLST+TGPVAGTLYLS+ H AFCSDRPLSFTAPSGQ  WSYYKVM+PL+ IG I
Sbjct: 175 KKTFACYLSTTTGPVAGTLYLSDAHAAFCSDRPLSFTAPSGQGAWSYYKVMIPLSKIGTI 234

Query: 232 NPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFVATGIAVQP 286
           NPV+MREN SE+YIQIVTIDGH+FWFMGFVNY+KA+RHL+ESIS+ V + IA +P
Sbjct: 235 NPVVMRENQSERYIQIVTIDGHDFWFMGFVNYEKASRHLTESISSSVGS-IAAEP 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468805|ref|XP_002263365.1| PREDICTED: GEM-like protein 5 [Vitis vinifera] gi|297738289|emb|CBI27490.3| unnamed protein product [Vitis vinifera]

 Score =  359 bits (921), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 171/245 (69%), Positives = 194/245 (79%), Gaps = 10/245 (4%)

Query: 44  SAEKWGTHVMGTPAAPTCHPDNKKAALWGAGAAGDNRAQYNNH--HHPYLQYSPVERPSG 101
            A+KWGTHVMG PA PT HPDN+KAALW        RA  + H  H PY+QYSPVE+PS 
Sbjct: 43  DAKKWGTHVMGAPAVPTVHPDNQKAALW--------RADEHQHTYHQPYVQYSPVEKPSN 94

Query: 102 SPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQ 161
           +P E +++ FNSWS KAET+  NIWHNLK   SVSE AWGK+NLTAKAI  GGFE++YKQ
Sbjct: 95  NPFEPVIHTFNSWSRKAETIGRNIWHNLKMGHSVSETAWGKVNLTAKAITEGGFESLYKQ 154

Query: 162 TFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKV 221
           TFAT  NE LKKTFACYLSTSTGPVAGTLYLS   VAFCSDRPLSFTAPSGQ+ WSYYKV
Sbjct: 155 TFATDPNEKLKKTFACYLSTSTGPVAGTLYLSTACVAFCSDRPLSFTAPSGQEAWSYYKV 214

Query: 222 MLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFVATG 281
           ++PL  IG +NPV+MRENSSEKYIQI+TIDGH+FWFMGFVN++KA  HL  S S F A  
Sbjct: 215 VIPLGNIGTVNPVVMRENSSEKYIQILTIDGHDFWFMGFVNFEKAVHHLLSSTSEFRAHE 274

Query: 282 IAVQP 286
            AV+P
Sbjct: 275 NAVRP 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522585|gb|AFK49354.1| unknown [Lotus japonicus]

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 166/241 (68%), Positives = 198/241 (82%), Gaps = 1/241 (0%)

Query: 44  SAEKWGTHVMGTPAAPTCHPDNKKAALW-GAGAAGDNRAQYNNHHHPYLQYSPVERPSGS 102
           + E WGTH+MGTPA P+ HPDNKKAAL  G+      +       HPY+Q+SP E+PS S
Sbjct: 45  TTENWGTHIMGTPAVPSSHPDNKKAALQTGSAEQPQVQYYQQQQQHPYVQHSPAEKPSNS 104

Query: 103 PMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQT 162
           P+ESIL++F+SWS KAE+ ANN+WHNL+T  S+S AA GKMNLT KAI  GG+E++YKQT
Sbjct: 105 PLESILHMFDSWSKKAESTANNVWHNLRTGPSMSSAALGKMNLTVKAISEGGYESLYKQT 164

Query: 163 FATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVM 222
           F T+ NE LKK+FACYLSTSTGPVAGTLYLSN+H AFCSDRPL FTAPSGQ+TWSYYKVM
Sbjct: 165 FTTYPNEKLKKSFACYLSTSTGPVAGTLYLSNIHAAFCSDRPLCFTAPSGQETWSYYKVM 224

Query: 223 LPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFVATGI 282
           +PL  IGA+NPV MREN SEKYIQIVT+DGH+FWFMGFVNYDKA ++LS+ IS+FV  G+
Sbjct: 225 VPLGKIGAVNPVSMRENPSEKYIQIVTVDGHDFWFMGFVNYDKAVKNLSDGISHFVVPGV 284

Query: 283 A 283
           A
Sbjct: 285 A 285

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519425|gb|AFK47774.1| unknown [Lotus japonicus]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 165/241 (68%), Positives = 197/241 (81%), Gaps = 1/241 (0%)

Query: 44  SAEKWGTHVMGTPAAPTCHPDNKKAALW-GAGAAGDNRAQYNNHHHPYLQYSPVERPSGS 102
           + E WGTH+MGTPA P+ HPDNKK AL  G+      +       HPY+Q+SP E+PS S
Sbjct: 45  TTENWGTHIMGTPAVPSSHPDNKKTALQTGSAEQPQVQYYQQQQQHPYVQHSPAEKPSNS 104

Query: 103 PMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQT 162
           P+ESIL++F+SWS KAE+ ANN+WHNL+T  S+S AA GKMNLT KAI  GG+E++YKQT
Sbjct: 105 PLESILHMFDSWSKKAESTANNVWHNLRTGPSMSSAALGKMNLTVKAIPEGGYESLYKQT 164

Query: 163 FATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVM 222
           F T+ NE LKK+FACYLSTSTGPVAGTLYLSN+H AFCSDRPL FTAPSGQ+TWSYYKVM
Sbjct: 165 FTTYPNEKLKKSFACYLSTSTGPVAGTLYLSNIHAAFCSDRPLCFTAPSGQETWSYYKVM 224

Query: 223 LPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFVATGI 282
           +PL  IGA+NPV MREN SEKYIQIVT+DGH+FWFMGFVNYDKA ++LS+ IS+FV  G+
Sbjct: 225 VPLGKIGAVNPVSMRENPSEKYIQIVTVDGHDFWFMGFVNYDKAVKNLSDGISHFVVPGV 284

Query: 283 A 283
           A
Sbjct: 285 A 285

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2183901	272	AT5G13200 "AT5G13200" [Arabido	0.782	0.830	0.613	5.2e-81
TAIR|locus:505006267	299	GEM "AT2G22475" [Arabidopsis t	0.640	0.618	0.449	4.5e-43
TAIR|locus:2032185	259	FIP1 "AT1G28200" [Arabidopsis	0.636	0.710	0.456	1.2e-42
TAIR|locus:2166806	219	AT5G23370 "AT5G23370" [Arabido	0.550	0.726	0.377	7.9e-30
TAIR|locus:2166791	210	AT5G23360 "AT5G23360" [Arabido	0.550	0.757	0.377	4.4e-29
TAIR|locus:2150823	222	AT5G08350 "AT5G08350" [Arabido	0.550	0.716	0.371	9.1e-29
TAIR|locus:2133387	233	AT4G01600 "AT4G01600" [Arabido	0.723	0.896	0.325	3.5e-27

TAIR|locus:2183901 AT5G13200 "AT5G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 143/233 (61%), Positives = 183/233 (78%)

Query:    46 EKWGTHVMGTPAAPTCHPDNKKXXXXXXXXXXDNRAQYNNHHHPYLQYSPVERPS-GSPM 104
             +KWGTHVMG PAAP  HPDN++          DN+      + PY+ YSPVE P+  +P+
Sbjct:    37 KKWGTHVMGAPAAPVAHPDNQQAAAWVAG---DNQ---QTQYQPYVIYSPVEHPTTNNPL 90

Query:   105 ESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFA 164
             E ++ +F++WS KAET+A N+WHNLKT  S+SE AWGK+NLTAKAI  GGFE++++Q F 
Sbjct:    91 EPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFG 150

Query:   165 THQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLP 224
             T  NETLKKTFACYLST+TGPVAGT+YLSN  VAFCSDRPL FTAPSGQ++WSYY+V++P
Sbjct:   151 TEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVP 210

Query:   225 LAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNF 277
             LA +  +NPV+++E   EKYIQ+ T+DGH+FWFMGFVNY+KAT HL  S+S+F
Sbjct:   211 LANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSDF 263

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:505006267 GEM "AT2G22475" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 89/198 (44%), Positives = 125/198 (63%)

Query:    88 HPYLQYSPVERPSGS---PMESILNVFNSW-------SNKAETLANNIWHNLKTNSSVSE 137
             +PY+  SP E    S    ME++  V   W       + K E+LA N W +L+T  S ++
Sbjct:    96 NPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFAD 155

Query:   138 AAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHV 197
             AA G++  + K    GG+E I++QTF T   E L  +FACYLSTS GPV G LY+S+  +
Sbjct:   156 AAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKL 215

Query:   198 AFCSDRPLSFTAPSGQKT-WSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFW 256
             A+CSD PLS+   +G +T WSYYKV++PL  + A+NP     N +EKYIQ++++D HEFW
Sbjct:   216 AYCSDNPLSYK--NGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFW 273

Query:   257 FMGFVNYDKATRHLSESI 274
             FMGF+NYD A   L +S+
Sbjct:   274 FMGFLNYDGAVTSLQDSL 291

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010482 "regulation of epidermal cell division" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2032185 FIP1 "AT1G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 90/197 (45%), Positives = 126/197 (63%)

Query:    88 HPYLQYSPVERPSGSPMESILNVFNSW-------SNKAETLANNIWHNLKTNSSVSEAAW 140
             +PY+  SP  R   + M+S+ +    W       + KAE LA N W +LKT  SV++AA 
Sbjct:    65 NPYVSPSPAPR---NTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAV 121

Query:   141 GKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFC 200
              ++    K +  GG+E ++KQTF    +E L KT+ACYLSTS GPV G +YLS   +AF 
Sbjct:   122 SRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFS 181

Query:   201 SDRPLSFTAPSGQKT-WSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMG 259
             SD PLS+    G++T WSYYKV+LP   + A+NP   R N+S+KYIQ+++ID HEFWFMG
Sbjct:   182 SDNPLSYK--EGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMG 239

Query:   260 FVNYDKATRHLSESISN 276
             FV Y+ A + L E++ +
Sbjct:   240 FVTYESAVKSLQEAVQS 256

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:2166806 AT5G23370 "AT5G23370" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 60/159 (37%), Positives = 96/159 (60%)

Query:   117 KAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFA 176
             K ++  N +    K    ++E    K++L A+ ++ GG E IYK+ F     E L K + 
Sbjct:    56 KNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQ 115

Query:   177 CYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIM 236
             CYLST+ GP+AG L++S+  +AFCS+R +   +P G+    +YKV +PL  I  +N    
Sbjct:   116 CYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQN 175

Query:   237 RENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESIS 275
                 S+KY+++VT+DG +FWFMGF++Y KA   L +++S
Sbjct:   176 TTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQALS 214

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166791 AT5G23360 "AT5G23360" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 60/159 (37%), Positives = 96/159 (60%)

Query:   117 KAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFA 176
             K ++  N      K    ++E    K++L AK ++ GG E IYK+ F     E L K + 
Sbjct:    48 KTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQ 107

Query:   177 CYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIM 236
             CYLST+ G +AG L++S+  +AFCS+R +  T+P G  T  +YKV +PL  I  +N    
Sbjct:   108 CYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQN 167

Query:   237 RENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESIS 275
              +  S++Y+++VT+D ++FWFMGFV+Y KA   L ++++
Sbjct:   168 TKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKALN 206

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2150823 AT5G08350 "AT5G08350" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 59/159 (37%), Positives = 96/159 (60%)

Query:   117 KAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFA 176
             K +   N +    K    ++E    K++L A+ ++ GG E I+K+ F   + E L K + 
Sbjct:    55 KTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQ 114

Query:   177 CYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIM 236
             CYLST+ GP+AG L++S+  +AFCS+R +   +P G     +YKV +PL  I  +N    
Sbjct:   115 CYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQN 174

Query:   237 RENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESIS 275
              +  S+KY+++VT+DG +FWFMGF++Y KA   L +++S
Sbjct:   175 TKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKALS 213

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2133387 AT4G01600 "AT4G01600" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 72/221 (32%), Positives = 114/221 (51%)

Query:    65 NKKXXXXXXXXXXDNRAQYNNHHHPYLQY-SPVERPSGSPMESILNVFNSW-------SN 116
             N K           +  +Y+N   PY+   SP         + +L V N         + 
Sbjct:     9 NDKLDSTAKHKTNSHGGRYDN---PYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATR 65

Query:   117 KAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFA 176
             KAE L   +  +LK + S+S+AA  +++   K I  GG E ++++ F     E L  +F 
Sbjct:    66 KAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFV 125

Query:   177 CYLSTSTGPVAGTLYLSNVHVAFCSDRPLSF-TAPSGQKTWSYYKVMLPLAMIGAINPVI 235
             CY+ST++GPV G +Y+SN  +AFCSD  +   ++  G    +YYKV++    I +I+   
Sbjct:   126 CYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSST 185

Query:   236 MRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISN 276
                  SE+Y+ +VT DG EFWFMGFV+Y  A   L++++ N
Sbjct:   186 NVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCLNKALLN 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.126   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      289       263   0.00091  114 3  11 23  0.38    34
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  222 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.86u 0.08s 19.94t   Elapsed:  00:00:01
  Total cpu time:  19.86u 0.08s 19.94t   Elapsed:  00:00:01
  Start:  Sat May 11 05:16:32 2013   End:  Sat May 11 05:16:33 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYV6	GEML5_ARATH	No assigned EC number	0.6023	0.8373	0.8897	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
cd13222	127	cd13222, PH-GRAM_GEM, GLABRA 2 expression modulato	1e-83
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	1e-12
pfam02893	60	pfam02893, GRAM, GRAM domain	4e-10
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	6e-10
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	2e-06

>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  246 bits (631), Expect = 1e-83
 Identities = 75/127 (59%), Positives = 94/127 (74%)

Query: 150 IKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTA 209
           ++ GG E +++QTF     E L K   CYLST+ GPVAGTL++S   VAFCSDRPLSFT+
Sbjct: 1   LQEGGVEKVFRQTFGVGPGEKLLKASQCYLSTTAGPVAGTLFISTAKVAFCSDRPLSFTS 60

Query: 210 PSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRH 269
           PSGQ   SYYKV++PL  I A+NP    +N SEKYIQIVT+DG EFWFMGFVNY KA ++
Sbjct: 61  PSGQLVRSYYKVVIPLRKIKAVNPSENVKNPSEKYIQIVTVDGFEFWFMGFVNYQKAFKY 120

Query: 270 LSESISN 276
           L +++S 
Sbjct: 121 LQQALSQ 127

GEM interacts with CDT1, a pre-replication complex component that is involved in DNA replication, and with TTG1 (Transparent Testa GLABRA 1), a transcriptional regulator of epidermal cell fate. GEM controls the level of histone H3K9 methylation at the promoters of the GLABRA 2 and CAPRICE (CPC) genes, which are essential for epidermis patterning. GEM also regulates cell division in different root cell types. GEM regulates proliferation-differentiation decisions by integrating DNA replication, cell division and transcriptional controls. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 127

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 12/68 (17%)

Query: 167 QNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLA 226
           + E L   ++CYLS  TGPV G LY+SN  + F S+ P   T           KV++PLA
Sbjct: 4   EEEKLIADYSCYLSR-TGPVQGRLYISNYRLCFRSNLPGKLT-----------KVVIPLA 51

Query: 227 MIGAINPV 234
            I  I   
Sbjct: 52  DITRIEKS 59

Length = 60

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 167 QNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLA 226
             E L   ++CYL     PV G LYL+N  + F SD+    T            +++PLA
Sbjct: 3   PEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKFGDLT-----------VLVIPLA 51

Query: 227 MIGAINPV 234
            I  +   
Sbjct: 52  DIERVEKE 59

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 55.0 bits (133), Expect = 6e-10
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 15/107 (14%)

Query: 169 ETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMI 228
           E    T+ C      GPV GTLYL+N  + F S               S  ++ +PL +I
Sbjct: 2   EKKDVTYICPFHV--GPVEGTLYLTNYRLYFKSKER-----------DSPTELDVPLGVI 48

Query: 229 GAINPV-IMRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESI 274
             +  V       +   ++I   D        F   D + R + E +
Sbjct: 49  SRVEKVGGSSSGENSYGLEITCKD-MRNLRFAFKQEDHSRRDIFELL 94

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 26/108 (24%)

Query: 159 YKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSY 218
           +++ FA  ++E L   +  YL     PV G LY+S+ +  F S  P + T          
Sbjct: 3   FRKHFALPESEKLLAYYYAYLQRVL-PVYGKLYISDNYFCFRSLLPGTRT---------- 51

Query: 219 YKVMLPLAMIGAINPVIMRENSSEK------YIQIVTIDGHEFWFMGF 260
            K++LPL  I  +          EK         ++ I GHE  F  F
Sbjct: 52  -KMILPLKDIENVEK--------EKGFRFGYSGLVIVIRGHEELFFEF 90

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.31
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.12
PF14470	96	bPH_3: Bacterial PH domain	95.91
PF08498	67	Sterol_MT_C: Sterol methyltransferase C-terminal;	90.05
KOG4347	671	consensus GTPase-activating protein VRP [General f	81.29

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.31  E-value=1.2e-12  Score=95.37  Aligned_cols=66  Identities=32%  Similarity=0.509  Sum_probs=45.9

Q ss_pred             hhhhhcCCCCcchhhhhcccccccCCCCceeeEEEeeceeeeecCCCeeeeCCCCCeeeeEEEEEEeccccccccc
Q 022974          158 IYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINP  233 (289)
Q Consensus       158 iFkQ~F~v~pgEkLlKa~aCYLSTtaGPVaG~LfIST~kvAFCSDrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnp  233 (289)
                      -|++.|...++|+|...|.|+|..+.+|+.|.||||+.+|+|+|+....-.          ++++|||..|..|..
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~----------~~~~ipl~~I~~i~k   67 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT----------CKFVIPLSDIKSIEK   67 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-----------EEEEEGGGEEEEEE
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce----------EEEEEEhHheeEEEE
Confidence            589999999999999999999999999999999999999999998765422          899999999998863

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.12  E-value=4.9e-11  Score=85.06  Aligned_cols=58  Identities=45%  Similarity=0.724  Sum_probs=50.5

Q ss_pred             CCCcchhhhhcccccccCCCCceeeEEEeeceeeeecCCCeeeeCCCCCeeeeEEEEEEeccccccccc
Q 022974          165 THQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINP  233 (289)
Q Consensus       165 v~pgEkLlKa~aCYLSTtaGPVaG~LfIST~kvAFCSDrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnp  233 (289)
                      ..++|+|...|.|||+ +.+|+.|.||||+.+++|+|+.+-...          .+++|||+.|.+|+.
T Consensus         2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~----------~~~~ipl~~I~~i~k   59 (61)
T smart00568        2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT----------PKVVIPLADITRIEK   59 (61)
T ss_pred             cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee----------EEEEEEHHHeeEEEE
Confidence            4689999999999999 679999999999999999997655422          299999999999874

>PF14470 bPH_3: Bacterial PH domain

Probab=95.91  E-value=0.041  Score=41.26  Aligned_cols=93  Identities=17%  Similarity=0.143  Sum_probs=65.8

Q ss_pred             CCcchhhhhcccccccCCCCceeeEEEeeceeeeecCCCeeeeCCCCCeeeeEEEEEEecccccccccccccCCCcCceE
Q 022974          166 HQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYI  245 (289)
Q Consensus       166 ~pgEkLlKa~aCYLSTtaGPVaG~LfIST~kvAFCSDrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~nPseKYI  245 (289)
                      .+||+.+-...|.+-...+.-.|+|+++++||-||+-..+.     |     .....||+++|.+|+-....   -...|
T Consensus         2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~-----~-----~~~~~i~y~~I~~v~~~~g~---~~~~i   68 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG-----G-----KKFESIPYDDITSVSFKKGI---LGGKI   68 (96)
T ss_pred             cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC-----C-----ceEEEEEhhheEEEEEEccc---cccEE
Confidence            57899998889987766788999999999999999874332     1     24589999999999976433   44679


Q ss_pred             EEEEecCceeeeeechhHHHHHHHHHHHH
Q 022974          246 QIVTIDGHEFWFMGFVNYDKATRHLSESI  274 (289)
Q Consensus       246 qIVTvD~~EFWFMGFvnYdKA~k~Lq~Al  274 (289)
                      .|.| ++..+=| +.+.= +-++-+-+.|
T Consensus        69 ~i~~-~~~~~~i-~~i~k-~~~~~~~~~i   94 (96)
T PF14470_consen   69 TIET-NGEKIKI-DNIQK-GDVKEFYEYI   94 (96)
T ss_pred             EEEE-CCEEEEE-EEcCH-HHHHHHHHHH
Confidence            8888 5544444 54432 2334444444

>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []

Probab=90.05  E-value=0.17  Score=39.15  Aligned_cols=53  Identities=9%  Similarity=0.025  Sum_probs=47.7

Q ss_pred             HHhhcccchHhHhhhhhhhhccCcchhHHhhhhhhhhhhhhhcCChhhhhhhh
Q 022974          110 VFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQT  162 (289)
Q Consensus       110 ~~n~~grKae~~a~~i~~Hlk~gpsiseta~GKLslGaKil~eGG~ekiFkQ~  162 (289)
                      +|++|||..-...=.+-|-|++.|+-+-.+..-|..+|.-|.+||-++||--.
T Consensus         6 r~t~~Gr~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPM   58 (67)
T PF08498_consen    6 RMTWLGRFITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPM   58 (67)
T ss_pred             eccHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCch
Confidence            46788888877888889999999999999999999999999999999999643

; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=81.29  E-value=1.6  Score=46.18  Aligned_cols=96  Identities=22%  Similarity=0.275  Sum_probs=74.5

Q ss_pred             hhcCCCCcchhhhhcccccccCCC--CceeeEEEeeceeeeecCCCeeeeCCCCCeeeeEEEEEEecccccccccccccC
Q 022974          161 QTFATHQNETLKKTFACYLSTSTG--PVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRE  238 (289)
Q Consensus       161 Q~F~v~pgEkLlKa~aCYLSTtaG--PVaG~LfIST~kvAFCSDrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~  238 (289)
                      -.|...  |+|.-.-.|=|-|.--  -..|-||+||..++|.||-+=.            -++++||.-|+.|.-.. ..
T Consensus        14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~------------c~~~~Pl~~vr~ve~~~-~s   78 (671)
T KOG4347|consen   14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWL------------CSFITPLLAVRSVERLD-DS   78 (671)
T ss_pred             ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCccc------------ceEeeehhhhhhhhccC-cc
Confidence            456655  9999999999999766  6899999999999999997643            46899999999988443 11


Q ss_pred             CCcCceEEEEEecCceeeeeechhHHHHHHHHH
Q 022974          239 NSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLS  271 (289)
Q Consensus       239 nPseKYIqIVTvD~~EFWFMGFvnYdKA~k~Lq  271 (289)
                      +--..=|-+.|-.+-.|-|-|+..=++.+.-+.
T Consensus        79 s~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~~  111 (671)
T KOG4347|consen   79 SLFTQLISLFTSNMVGMRFGGLTERLKLLSKLH  111 (671)
T ss_pred             ccchhhhHHhhcCcceEEecchhhHHHHHHHHh
Confidence            112233667888999999999988777776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	91.16
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	89.31

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=91.16  E-value=0.37  Score=47.81  Aligned_cols=103  Identities=17%  Similarity=0.177  Sum_probs=62.0

Q ss_pred             cCCCCcchhhhhccc--ccccCCCCceeeEEEeeceeeeecCCCeeeeCCCCCeeeeEEEEEEecccccccccccccCCC
Q 022974          163 FATHQNETLKKTFAC--YLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENS  240 (289)
Q Consensus       163 F~v~pgEkLlKa~aC--YLSTtaGPVaG~LfIST~kvAFCSDrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~nP  240 (289)
                      |...|||.++..-.-  |+..-.|++.|+|||++.|+.|.++..       ..    .+.+-|||..|..|.........
T Consensus         7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~-------~~----~~~~~iPL~~I~~vek~~~~s~~   75 (528)
T 1zsq_A            7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER-------DP----PFVLDASLGVINRVEKIGGASSR   75 (528)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS-------SS----CEEEEEEGGGEEEEEEECCTTCC
T ss_pred             CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC-------Cc----cEEEEeeccceEEEEEcCCCCcC
Confidence            557899999855211  444456899999999999999998521       10    24578999888777643211111


Q ss_pred             c--CceEEEEEecCceeeeeechhHHHHHHHHHHHHhhh
Q 022974          241 S--EKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNF  277 (289)
Q Consensus       241 s--eKYIqIVTvD~~EFWFMGFvnYdKA~k~Lq~Als~~  277 (289)
                      .  -..|+|..-|- .++=.+|-.=+...+.+-++|.++
T Consensus        76 ~~~~~~l~I~CKDf-r~~~f~f~~~~~~~~~v~~~L~~~  113 (528)
T 1zsq_A           76 GENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLMKY  113 (528)
T ss_dssp             STTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHHHH
T ss_pred             CCCCceEEEEccCC-eEEEEEecCchHHHHHHHHHHHHH
Confidence            1  12477776664 444445653333244444566553

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=89.31  E-value=0.62  Score=47.53  Aligned_cols=103  Identities=18%  Similarity=0.181  Sum_probs=61.4

Q ss_pred             hcCCCCcchhhhhcc-c-ccccCCCCceeeEEEeeceeeeecCCCeeeeCCCCCeeeeEEEEEEecccccccccccccCC
Q 022974          162 TFATHQNETLKKTFA-C-YLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMREN  239 (289)
Q Consensus       162 ~F~v~pgEkLlKa~a-C-YLSTtaGPVaG~LfIST~kvAFCSDrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~n  239 (289)
                      -|...|||.++..-. . |+..-.|++.|+|||++.|+.|++...       ..    .+.+-|||..|..|........
T Consensus        78 ~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~-------~~----~~~~~IPL~~I~~Iekv~g~s~  146 (657)
T 1lw3_A           78 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER-------DP----PFVLDASLGVINRVEKIGGASS  146 (657)
T ss_dssp             CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS-------SS----CEEEEEEGGGEEEEEEECCTTC
T ss_pred             CCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC-------Cc----ceEEEecccceEEEEecCCCcc
Confidence            466899999984421 1 344446899999999999999998521       11    2456799988888765322111


Q ss_pred             CcC--ceEEEEEecCceeeeeechhHHHHHHHHHHHHhh
Q 022974          240 SSE--KYIQIVTIDGHEFWFMGFVNYDKATRHLSESISN  276 (289)
Q Consensus       240 Pse--KYIqIVTvD~~EFWFMGFvnYdKA~k~Lq~Als~  276 (289)
                      ..+  -.|+|..-|- .++=.+|-.=+...+.+-++|..
T Consensus       147 ~g~~~~~l~I~CKDf-R~~~f~f~~~~~~~~~v~~~L~~  184 (657)
T 1lw3_A          147 RGENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLMK  184 (657)
T ss_dssp             CSTTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHHH
T ss_pred             cCCCCceEEEEecCC-cEEEEEeCCccchHHHHHHHHHH
Confidence            111  2466666654 44444565332323344455554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	96.01
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	90.97

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0038  Score=48.58  Aligned_cols=101  Identities=19%  Similarity=0.241  Sum_probs=61.5

Q ss_pred             CCcchhhhh--cccccccCCCCceeeEEEeeceeeeecCCCeeeeCCCCCeeeeEEEEEEecccccccccccccCC--Cc
Q 022974          166 HQNETLKKT--FACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMREN--SS  241 (289)
Q Consensus       166 ~pgEkLlKa--~aCYLSTtaGPVaG~LfIST~kvAFCSDrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~n--Ps  241 (289)
                      .|||.+.-.  -.=|+..-.||+-|+|||++-|+.|-++.-      +.     .+.+-|||..|..|........  -.
T Consensus         6 lpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~------~~-----~~~~~ipl~~I~~v~k~~~~~~~~~~   74 (125)
T d1zsqa1           6 LPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------DP-----PFVLDASLGVINRVEKIGGASSRGEN   74 (125)
T ss_dssp             CTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------SS-----CEEEEEEGGGEEEEEEECCTTCCSTT
T ss_pred             CCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCC------Cc-----cEEEEeccceeeeeeecccccccCCc
Confidence            577766422  123455567999999999999999976421      11     1345699998888864332221  12


Q ss_pred             CceEEEEEecCceeeeeechhHHHHHHHHHHHHhhhh
Q 022974          242 EKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNFV  278 (289)
Q Consensus       242 eKYIqIVTvD~~EFWFMGFvnYdKA~k~Lq~Als~~~  278 (289)
                      --.|+|+.-|---+=|. |..=..-.+.+.++|+++.
T Consensus        75 ~~~L~I~CKDfr~~~f~-f~~e~~~~~~v~~~L~~~a  110 (125)
T d1zsqa1          75 SYGLETVCKDIRNLRFA-HKPEGRTRRSIFENLMKYA  110 (125)
T ss_dssp             CSEEEEEETTTEEEEEE-CCGGGCCHHHHHHHHHHHS
T ss_pred             cccEEEEeccCeEEEEE-EcCCccHHHHHHHHHHHhC
Confidence            23699999886655543 3211122345677777654

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.28  Score=37.74  Aligned_cols=79  Identities=22%  Similarity=0.278  Sum_probs=54.7

Q ss_pred             ceeeEEEeeceeeeecCCCeeeeCCCCCeeeeEEEEEEecccccccccccccCCCcCceEEEEEecCceeeeeechhHHH
Q 022974          186 VAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDK  265 (289)
Q Consensus       186 VaG~LfIST~kvAFCSDrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~EFWFMGFvnYdK  265 (289)
                      +.|+|||++.+|+|..+.+      +      --+|.|++..|+.-..+  .+..+.-=++||.-|+-.|=|- |.|+.-
T Consensus        20 ~~GtL~l~~d~l~W~p~~~------~------~~~v~~~~~~I~~~q~S--pe~s~Kv~Lkiv~~~~~s~~F~-Ftn~~~   84 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEGK------D------RFTISHMYADIKCQKIS--PEGKAKIQLQLVLHAGDTTNFH-FSNEST   84 (108)
T ss_dssp             CEEEEEECSSEEEEEESSC------S------SCSEEEETTTEEEEEEC--CTTCSSEEEEEEETTSCEEEEE-ECCTTT
T ss_pred             CCcEEEEEcCeEEEEcCCC------C------CceEEEEhhhhhceecC--CCCcccceeEEEEeCCCeEEEE-ECChHH
Confidence            6799999999999976532      1      13478999999876544  3455556699999998887774 778753


Q ss_pred             H-------HHHHHHHHhhhhc
Q 022974          266 A-------TRHLSESISNFVA  279 (289)
Q Consensus       266 A-------~k~Lq~Als~~~~  279 (289)
                      |       -..||++|..++.
T Consensus        85 ~~~~Rd~iK~~Lq~~i~~~k~  105 (108)
T d2rnrb1          85 AVKERDAVKDLLQQLLPKFKR  105 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            3       2345666665553