Citrus Sinensis ID: 022982
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 289 | 2.2.26 [Sep-21-2011] | |||||||
| O27710 | 258 | Phosphosulfolactate synth | yes | no | 0.816 | 0.914 | 0.241 | 5e-10 | |
| Q57703 | 251 | Phosphosulfolactate synth | yes | no | 0.719 | 0.828 | 0.232 | 3e-07 | |
| O06739 | 252 | Phosphosulfolactate synth | yes | no | 0.771 | 0.884 | 0.231 | 0.0006 |
| >sp|O27710|PSLS_METTH Phosphosulfolactate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=comA PE=3 SV=1 | Back alignment and function desciption |
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Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 118/273 (43%), Gaps = 37/273 (13%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R+ KPR+ G+T + +S+ D+ E +VD +KF G+ L + ++E V
Sbjct: 11 RSGKPRKNGITMVLDKGMGPASAR----DLMEISSDYVDFIKFGWGTLPLHRRDTVKEKV 66
Query: 77 KRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 136
DV G I + +EY ++ + +GF+T+E++ G++EI E R +
Sbjct: 67 DMYRSFDVEPYPGGTLFE-IAHLNDKVEEYFQEARSLGFETLEISNGTVEIETEEKCRLI 125
Query: 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196
+ G F V+ +RDR + D +R L
Sbjct: 126 EMAVDEG------FMVLSEVGKKDPERDRLL---------------EPDDRVRLVRADLR 164
Query: 197 AGADMIMIDSDD------VCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRY 250
AGA M+++++ + + ++R D + RL +++ ++EA +FI +
Sbjct: 165 AGASMVLMEARESGQNIGIYDERGNIREDEFNHLTDRLPMDRIIWEAPQKSQQVYFILKI 224
Query: 251 GPKVNL-FVDHSQVMDLEC----LRGRNLGKSH 278
GP VNL + ++ LE LRG LGK +
Sbjct: 225 GPDVNLGNIPPEEITALETIRRGLRGDTLGKVN 257
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Catalyzes the addition of sulfite to phosphoenolpyruvate (PEP) to yield (2R)-phospho-3-sulfolactate (PSL). Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420) EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 9 |
| >sp|Q57703|PSLS_METJA Phosphosulfolactate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=comA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 41/249 (16%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPS 101
+ED + G ++D +KF G+ +++ + ++E + + V G E+ G
Sbjct: 28 VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK- 86
Query: 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS 161
F E++ +C+++GF+ +E++ GS +I E ++ K G F V+
Sbjct: 87 -FDEFLNECEKLGFEAVEISDGSSDISLEERKNAIKRAKDNG------FMVLTEVGKKMP 139
Query: 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK---------H 212
D+D+ +D I+ L+AGAD ++I+ + K
Sbjct: 140 DKDKQL---------------TIDDRIKLINFDLDAGADYVIIEGRESGKGIGLFDKEGK 184
Query: 213 ADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLEC--- 268
D++AK + + K +FEA FI ++G VNL + +V+ LE
Sbjct: 185 VKENELDVLAK---NVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLRR 241
Query: 269 -LRGRNLGK 276
LRG GK
Sbjct: 242 GLRGDTFGK 250
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Catalyzes the addition of sulfite to phosphoenolpyruvate (PEP) to yield (2R)-phospho-3-sulfolactate (PSL). Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 9 |
| >sp|O06739|PSLS_BACSU Phosphosulfolactate synthase OS=Bacillus subtilis (strain 168) GN=yitD PE=1 SV=1 | Back alignment and function description |
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Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 113/263 (42%), Gaps = 40/263 (15%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R KPR G + + Y L +D ++D +KF G+ SL+ K +EE +
Sbjct: 11 RTNKPRETGQSILIDNGYPL----QFFKDAIAGASDYIDFVKFGWGT-SLLTKD-LEEKI 64
Query: 77 KRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+HD+ G + +++ + + F Y C G + IE++ G+L + +
Sbjct: 65 STLKEHDITFFFGGTLFEKYVSQKKVNEFHRY---CTYFGCEYIEISNGTLPMTNKEKAA 121
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194
Y+ +F V+ S++ S A +A S E++E +
Sbjct: 122 YIA-------DFSDEFLVL---SEVGSKD-----AELASRQSSEEWLEYI-------VED 159
Query: 195 LEAGADMIMIDSDD-----VCKHADSLRADIIAKVIGRLGL-EKTMFEATNPRTSEWFIR 248
+EAGA+ ++ ++ + +C + +R I+ +I + +FEA N + FI+
Sbjct: 160 MEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTLQQGFIQ 219
Query: 249 RYGPKVNLF-VDHSQVMDLECLR 270
+ GP VNL + + LE LR
Sbjct: 220 KIGPNVNLANIPFHDAIALETLR 242
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Catalyzes the addition of sulfite to phosphoenolpyruvate (PEP) to yield (2R)-phospho-3-sulfolactate (PSL) (By similarity). Is probably involved in the biosynthesis of L-sulfolactate, which is a major constituent of sporulating cells and mature spores. Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 289 | ||||||
| 449454694 | 286 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.982 | 0.790 | 1e-131 | |
| 30685384 | 286 | Aldolase-type TIM barrel family protein | 0.979 | 0.989 | 0.754 | 1e-128 | |
| 224116330 | 291 | predicted protein [Populus trichocarpa] | 0.993 | 0.986 | 0.757 | 1e-127 | |
| 356524766 | 286 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.989 | 0.739 | 1e-123 | |
| 255555077 | 277 | furin, putative [Ricinus communis] gi|22 | 0.930 | 0.971 | 0.762 | 1e-122 | |
| 297804020 | 1745 | hypothetical protein ARALYDRAFT_329472 [ | 0.930 | 0.154 | 0.674 | 1e-118 | |
| 3402751 | 1736 | putative protein [Arabidopsis thaliana] | 0.930 | 0.154 | 0.669 | 1e-117 | |
| 350534450 | 286 | phosphosulfolactate synthase-related pro | 0.979 | 0.989 | 0.686 | 1e-116 | |
| 356519509 | 291 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.982 | 0.690 | 1e-113 | |
| 357123468 | 299 | PREDICTED: uncharacterized protein LOC10 | 0.982 | 0.949 | 0.654 | 1e-112 |
| >gi|449454694|ref|XP_004145089.1| PREDICTED: uncharacterized protein LOC101208408 [Cucumis sativus] gi|449473349|ref|XP_004153856.1| PREDICTED: uncharacterized protein LOC101220954 [Cucumis sativus] gi|449488403|ref|XP_004158021.1| PREDICTED: uncharacterized protein LOC101228109 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/282 (79%), Positives = 254/282 (90%), Gaps = 1/282 (0%)
Query: 6 YGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHS 65
Y WKSFDE EDR EKPRR GVTEMR PHYTLS+ +V+++IFES+GQFVDGLKFSGGSHS
Sbjct: 4 YLWKSFDEDEDRPEKPRRCGVTEMRGPHYTLST-QDVIQEIFESLGQFVDGLKFSGGSHS 62
Query: 66 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125
L+P+ F++EV + AH+HDVYVSTGDWAEHL+R GPS FKEYVE+CK +GFDTIELNVGSL
Sbjct: 63 LLPRDFMKEVTEMAHRHDVYVSTGDWAEHLLRKGPSGFKEYVEECKLLGFDTIELNVGSL 122
Query: 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185
++PEETLLRYVRL+K+ GL+AKP+FAV FNKSDIP +RAFGAY+ PRS+E VEDVD
Sbjct: 123 DVPEETLLRYVRLIKNGGLRAKPQFAVKFNKSDIPISGNRAFGAYIVPKPRSSELVEDVD 182
Query: 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEW 245
LLIRRAERCLEAGADMIMID+DDV KHA+ LRADIIAK+IGRLGLEKTMFEA+NP+TSEW
Sbjct: 183 LLIRRAERCLEAGADMIMIDADDVSKHAEFLRADIIAKIIGRLGLEKTMFEASNPQTSEW 242
Query: 246 FIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYF 287
FI YGPKVNLFVDHSQVMDLECLRGRNLGK+H S+L SSYF
Sbjct: 243 FINHYGPKVNLFVDHSQVMDLECLRGRNLGKNHSSILGSSYF 284
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30685384|ref|NP_567623.2| Aldolase-type TIM barrel family protein [Arabidopsis thaliana] gi|26452567|dbj|BAC43368.1| unknown protein [Arabidopsis thaliana] gi|332659039|gb|AEE84439.1| Aldolase-type TIM barrel family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 215/285 (75%), Positives = 256/285 (89%), Gaps = 2/285 (0%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WKSF+E EDR EKPRR+GVTEMR PHY++ S N+L++IFESMGQFVDGLKFSGGS+
Sbjct: 4 YYRWKSFEENEDRPEKPRRYGVTEMRGPHYSVLS-QNLLQEIFESMGQFVDGLKFSGGSN 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+CKQ+GFDTIELN
Sbjct: 63 SLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEECKQLGFDTIELNANL 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184
LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+YV PRS+E+VED+
Sbjct: 123 LEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGSYVVPEPRSSEFVEDI 181
Query: 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSE 244
DLLIR+AERCLEAGAD IMID+DDVCK+ADSLRADIIAKVIGRLG+EKTMFEA++ + E
Sbjct: 182 DLLIRKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIGRLGIEKTMFEASDAKLVE 241
Query: 245 WFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 289
WFI+RYGP VNL+VDHSQ+MDLECLRGR+LGK H+SVLSSSYFL
Sbjct: 242 WFIKRYGPNVNLYVDHSQIMDLECLRGRHLGKDHQSVLSSSYFLF 286
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116330|ref|XP_002317271.1| predicted protein [Populus trichocarpa] gi|222860336|gb|EEE97883.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/289 (75%), Positives = 247/289 (85%), Gaps = 2/289 (0%)
Query: 2 SGYYYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSG 61
S YY WKSF+E EDR EKPRRFGVTEMR P YTL S N+L+D+FE+MGQFVDGLKFSG
Sbjct: 4 SSVYYQWKSFEEDEDRPEKPRRFGVTEMRGPQYTLLS-QNMLQDVFETMGQFVDGLKFSG 62
Query: 62 GSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121
GSHSLMPK FI+EVV AH+HDVYVSTGDWAEHL+ GP+AFKEYVE+CK +GFDTIELN
Sbjct: 63 GSHSLMPKSFIKEVVDMAHKHDVYVSTGDWAEHLLHKGPTAFKEYVEECKSMGFDTIELN 122
Query: 122 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181
VGSL +PEETLLRYVRL+KS GLKAKP+FAV FN+SDIP RAFGAYV PRS+E V
Sbjct: 123 VGSLGVPEETLLRYVRLIKSGGLKAKPQFAVKFNRSDIPIGGHRAFGAYVPPTPRSSELV 182
Query: 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 241
EDV+LLI AERCLEAGADMIMID+DD+CK DSLRADI+ KVIGRLGLEKTMFEA+N +
Sbjct: 183 EDVNLLINMAERCLEAGADMIMIDADDICKDVDSLRADIVVKVIGRLGLEKTMFEASNTK 242
Query: 242 TSEWFIRRYGPKVNLFVDHSQVMDLECLR-GRNLGKSHRSVLSSSYFLL 289
T++WFI+RYGPKVNLFVDHSQV+ LECLR G N+G+ S L SSYFL
Sbjct: 243 TADWFIKRYGPKVNLFVDHSQVIGLECLRGGHNMGRRQASALGSSYFLF 291
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524766|ref|XP_003530999.1| PREDICTED: uncharacterized protein LOC100805668 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust.
Identities = 210/284 (73%), Positives = 244/284 (85%), Gaps = 1/284 (0%)
Query: 6 YGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHS 65
+ WKSF+E EDR KPR FGVTE++SPH TL S HN+L+DIFESMG +VDGLKFSGGSHS
Sbjct: 4 FRWKSFEENEDRPAKPRHFGVTEIQSPHCTLFS-HNLLQDIFESMGDYVDGLKFSGGSHS 62
Query: 66 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125
+MPK I++++ AHQHDVYVSTGDWAEH+I PS FKEYVE+CKQ+GFDTIELNVGSL
Sbjct: 63 MMPKATIKQIIDMAHQHDVYVSTGDWAEHMISKSPSGFKEYVEECKQLGFDTIELNVGSL 122
Query: 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185
EIPEET LR+VRLVKS GLKAKP F V FN+SDIP DRA+GAY+ PRS E VEDV+
Sbjct: 123 EIPEETFLRFVRLVKSGGLKAKPHFQVKFNESDIPKGGDRAYGAYIPPVPRSFELVEDVN 182
Query: 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEW 245
LLIRRAERCLEAGADMIMID+DDV KHAD++RADIIAK+IGRLG+EKTMFEA+N R SEW
Sbjct: 183 LLIRRAERCLEAGADMIMIDADDVSKHADNMRADIIAKIIGRLGIEKTMFEASNQRISEW 242
Query: 246 FIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 289
FI++YGPKVNLF+DHS V+D+ECLRGRNLG++ S L +S FL
Sbjct: 243 FIKQYGPKVNLFIDHSNVVDVECLRGRNLGRNLASFLGASDFLF 286
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555077|ref|XP_002518576.1| furin, putative [Ricinus communis] gi|223542421|gb|EEF43963.1| furin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/270 (76%), Positives = 239/270 (88%), Gaps = 1/270 (0%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WK+FDE +DR EKPRRFGVTEMR P Y+L + N+L D+FESMGQFVDGLKFSGGSH
Sbjct: 4 YYQWKTFDEDDDRPEKPRRFGVTEMRGPQYSLLT-QNMLRDVFESMGQFVDGLKFSGGSH 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SLMP+ FI++V+ AHQHD+YVSTGDWAEHL+ GPSAFK+YVE+CK +GFDTIELNVGS
Sbjct: 63 SLMPRSFIKDVIDMAHQHDIYVSTGDWAEHLLHKGPSAFKDYVEECKNMGFDTIELNVGS 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184
L +PEETLLRYVRL+KSA LKAKP+FA FNKSDIP +RAFGAY+ P+S E +ED+
Sbjct: 123 LGVPEETLLRYVRLIKSADLKAKPQFAAKFNKSDIPIGGNRAFGAYMPPTPQSFELIEDI 182
Query: 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSE 244
DLLIRRAERCL+AGADMIMID+DD+CK A+SLRADIIAKVIGRLGLEKTMFEA+N +T+E
Sbjct: 183 DLLIRRAERCLKAGADMIMIDADDICKDAESLRADIIAKVIGRLGLEKTMFEASNSKTTE 242
Query: 245 WFIRRYGPKVNLFVDHSQVMDLECLRGRNL 274
WFI+ YGPKVNLF+DHSQV+ LECLRGRNL
Sbjct: 243 WFIKHYGPKVNLFIDHSQVIGLECLRGRNL 272
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804020|ref|XP_002869894.1| hypothetical protein ARALYDRAFT_329472 [Arabidopsis lyrata subsp. lyrata] gi|297315730|gb|EFH46153.1| hypothetical protein ARALYDRAFT_329472 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/301 (67%), Positives = 245/301 (81%), Gaps = 32/301 (10%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WKSF+E EDR EKPRR+GVTEMR PHY++ S N+L++IFESMGQFVDGLKFSGGS+
Sbjct: 4 YYRWKSFEENEDRPEKPRRYGVTEMRGPHYSVLS-QNLLQEIFESMGQFVDGLKFSGGSN 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+CKQ+GFDTIELN S
Sbjct: 63 SLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEECKQLGFDTIELNANS 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184
LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+YV PRS+E+VED+
Sbjct: 123 LEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGSYVVPEPRSSEFVEDI 181
Query: 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSE 244
DLLIR+AERCLEAGAD IMID+DDVCK+ DSLRADIIAKVIGRLG+EKTMFEA++ + +E
Sbjct: 182 DLLIRKAERCLEAGADTIMIDADDVCKYPDSLRADIIAKVIGRLGIEKTMFEASDGKLAE 241
Query: 245 WFIRRYGP------------------------------KVNLFVDHSQVMDLECLRGRNL 274
WFI+RYGP +VNL+VDHSQ+MDLECLRGR+L
Sbjct: 242 WFIKRYGPNVFADTPLYYFYLLFEWSPSQDSCLFVLVFQVNLYVDHSQIMDLECLRGRHL 301
Query: 275 G 275
Sbjct: 302 A 302
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3402751|emb|CAA20197.1| putative protein [Arabidopsis thaliana] gi|7268928|emb|CAB79131.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/303 (66%), Positives = 244/303 (80%), Gaps = 34/303 (11%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WKSF+E EDR EKPRR+GVTEMR PHY++ S N+L++IFESMGQFVDGLKFSGGS+
Sbjct: 4 YYRWKSFEENEDRPEKPRRYGVTEMRGPHYSVLS-QNLLQEIFESMGQFVDGLKFSGGSN 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+CKQ+GFDTIELN
Sbjct: 63 SLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEECKQLGFDTIELNANL 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184
LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+YV PRS+E+VED+
Sbjct: 123 LEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGSYVVPEPRSSEFVEDI 181
Query: 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSE 244
DLLIR+AERCLEAGAD IMID+DDVCK+ADSLRADIIAKVIGRLG+EKTMFEA++ + E
Sbjct: 182 DLLIRKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIGRLGIEKTMFEASDAKLVE 241
Query: 245 WFIRRYGP--------------------------------KVNLFVDHSQVMDLECLRGR 272
WFI+RYGP +VNL+VDHSQ+MDLECLRGR
Sbjct: 242 WFIKRYGPNVFADTLVLSIIFNLLFEWSPSQDSYLFVLVFQVNLYVDHSQIMDLECLRGR 301
Query: 273 NLG 275
+L
Sbjct: 302 HLA 304
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350534450|ref|NP_001234653.1| phosphosulfolactate synthase-related protein [Solanum lycopersicum] gi|54639895|gb|AAV36519.1| phosphosulfolactate synthase-related protein [Solanum lycopersicum] gi|54639897|gb|AAV36520.1| phosphosulfolactate synthase-related protein [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 195/284 (68%), Positives = 243/284 (85%), Gaps = 1/284 (0%)
Query: 6 YGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHS 65
Y WKSF++ DR EKPRR+GVTEM+ P+Y+L S +LED+ ESMG FVDGLK GSH+
Sbjct: 4 YRWKSFNDDGDRPEKPRRYGVTEMKGPNYSLFS-RGLLEDVLESMGHFVDGLKLCDGSHT 62
Query: 66 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125
+MPK +I+EV AH+H+VYVS+GD A+ ++ GPS+ KEY+E+CKQ+GFD+IEL+V SL
Sbjct: 63 VMPKNYIKEVTDMAHKHNVYVSSGDSADQMLFRGPSSLKEYIEECKQLGFDSIELDVASL 122
Query: 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185
+PEETLLRYVRL+KS+GL+AKP+F+V FNKSDI DRAFGAYV AP+++E VEDVD
Sbjct: 123 GLPEETLLRYVRLIKSSGLRAKPQFSVKFNKSDIAFAGDRAFGAYVIPAPQTSEMVEDVD 182
Query: 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEW 245
LL+RRAERCLEAGADMIMI++DD+C+ A LR+DI+AK++GRLGLEKTMFEA+NP+ SEW
Sbjct: 183 LLVRRAERCLEAGADMIMINADDLCRQAGLLRSDIVAKIVGRLGLEKTMFEASNPKISEW 242
Query: 246 FIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 289
F++RYGPKVNL VDHSQVMDLECLRGRNLG++H SVL SYFLL
Sbjct: 243 FVKRYGPKVNLIVDHSQVMDLECLRGRNLGQNHSSVLGRSYFLL 286
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Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519509|ref|XP_003528415.1| PREDICTED: uncharacterized protein LOC100781391 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/291 (69%), Positives = 236/291 (81%), Gaps = 5/291 (1%)
Query: 2 SGYYYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSG 61
S Y + WK F+E EDR KPR FGVTE+R PHYTL S HN+L+DIFES+G +VDGLKFSG
Sbjct: 3 SDYAFRWKCFEENEDRPAKPRCFGVTEIRRPHYTLFS-HNLLQDIFESVGDYVDGLKFSG 61
Query: 62 GSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121
GSHS+MPK I++ + AHQHDVYVSTGDWAEH++ PS+FKEYVE+ KQ+GFDTIELN
Sbjct: 62 GSHSMMPKATIKQAIDMAHQHDVYVSTGDWAEHMVSKSPSSFKEYVEEYKQLGFDTIELN 121
Query: 122 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP---RST 178
V SLEIPEET LR++RLVKS GLKAKP F V FN+SDI R R + P S
Sbjct: 122 VSSLEIPEETFLRFIRLVKSGGLKAKPHFQVKFNESDISPLR-RNLNKILVHHPFVSFSA 180
Query: 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238
E+VEDV+LLIRRAERC+EAGADMIMID+DDV KHAD++RADIIAK+IGRLG+EKTMFEA+
Sbjct: 181 EFVEDVNLLIRRAERCIEAGADMIMIDADDVSKHADNMRADIIAKIIGRLGIEKTMFEAS 240
Query: 239 NPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 289
N R SEWFI++YGP VNLF+DH V+D+ECLRGRNLGK+ SVL SS FL
Sbjct: 241 NQRISEWFIKQYGPNVNLFIDHWNVVDVECLRGRNLGKNLASVLGSSDFLF 291
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357123468|ref|XP_003563432.1| PREDICTED: uncharacterized protein LOC100846790 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 186/284 (65%), Positives = 241/284 (84%)
Query: 6 YGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHS 65
+G+ DE +DR EKPRR+GVTEMRSP+Y+ S+H+ L++I +S+G FVDGLKFSGGSHS
Sbjct: 16 HGYGHGDEADDRPEKPRRYGVTEMRSPYYSFRSAHHALQEILDSIGPFVDGLKFSGGSHS 75
Query: 66 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125
LM K I E+ AH+HD+YVSTGDWAEHL+R GPS+FK+YV++CK++GFDT+ELN GSL
Sbjct: 76 LMGKELIREITDLAHKHDMYVSTGDWAEHLLRQGPSSFKQYVQECKELGFDTVELNAGSL 135
Query: 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185
++PEE +LR VRL+K++GL+AKP F+V F+ SDIP+ DRAFGAY +++E VEDVD
Sbjct: 136 KLPEEAILRLVRLIKNSGLRAKPLFSVKFDSSDIPASGDRAFGAYTVPVKQTSERVEDVD 195
Query: 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEW 245
LLIRRAERCLEAGADMIMID+DDVC+ ADSLRAD+IAK++GRLGL+KTMFE +N TSEW
Sbjct: 196 LLIRRAERCLEAGADMIMIDADDVCQRADSLRADVIAKIVGRLGLDKTMFETSNANTSEW 255
Query: 246 FIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 289
F++RY P+VNLFVDHS+VM+LE LRG ++ +S S+L+S +FL+
Sbjct: 256 FVKRYSPRVNLFVDHSEVMNLERLRGFDMRRSSPSLLTSPFFLM 299
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Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 289 | ||||||
| TAIR|locus:2141196 | 286 | HSA32 "HEAT-STRESS-ASSOCIATED | 0.975 | 0.986 | 0.757 | 9.8e-119 | |
| UNIPROTKB|Q653W2 | 302 | P0547F09.36 "Phosphosulfolacta | 0.961 | 0.920 | 0.665 | 8.8e-102 | |
| ASPGD|ASPL0000047680 | 342 | AN10197 [Emericella nidulans ( | 0.858 | 0.725 | 0.397 | 2.7e-45 | |
| UNIPROTKB|Q5BDB6 | 1107 | AN1464.2 "Putative uncharacter | 0.858 | 0.224 | 0.397 | 3.7e-44 | |
| UNIPROTKB|Q83AE7 | 290 | CBU_1954 "(2R)-phospho-3-sulfo | 0.833 | 0.831 | 0.288 | 2.2e-27 | |
| TIGR_CMR|CBU_1954 | 290 | CBU_1954 "hypothetical protein | 0.833 | 0.831 | 0.288 | 2.2e-27 |
| TAIR|locus:2141196 HSA32 "HEAT-STRESS-ASSOCIATED 32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
Identities = 215/284 (75%), Positives = 256/284 (90%)
Query: 5 YYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH 64
YY WKSF+E EDR EKPRR+GVTEMR PHY++ S N+L++IFESMGQFVDGLKFSGGS+
Sbjct: 4 YYRWKSFEENEDRPEKPRRYGVTEMRGPHYSVLSQ-NLLQEIFESMGQFVDGLKFSGGSN 62
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124
SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+CKQ+GFDTIELN
Sbjct: 63 SLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEECKQLGFDTIELNANL 122
Query: 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184
LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+YV PRS+E+VED+
Sbjct: 123 LEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGSYVVPEPRSSEFVEDI 181
Query: 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSE 244
DLLIR+AERCLEAGAD IMID+DDVCK+ADSLRADIIAKVIGRLG+EKTMFEA++ + E
Sbjct: 182 DLLIRKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIGRLGIEKTMFEASDAKLVE 241
Query: 245 WFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFL 288
WFI+RYGP VNL+VDHSQ+MDLECLRGR+LGK H+SVLSSSYFL
Sbjct: 242 WFIKRYGPNVNLYVDHSQIMDLECLRGRHLGKDHQSVLSSSYFL 285
|
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| UNIPROTKB|Q653W2 P0547F09.36 "Phosphosulfolactate synthase-related protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
Identities = 187/281 (66%), Positives = 232/281 (82%)
Query: 12 DEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPF 71
D +DR EKPRR+GVTEMRSP Y +H+ L++I +S+G FVDGLKF+GGSHSLM K
Sbjct: 22 DGDDDRPEKPRRYGVTEMRSPFYAFRPAHHALQEILDSLGPFVDGLKFTGGSHSLMGKEL 81
Query: 72 IEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET 131
+ E+ AH+HD+YVSTGDWAEHL+R GPS FK+YVE+CK +GFDTIELN GSL++PEE
Sbjct: 82 VREITDLAHKHDIYVSTGDWAEHLLRQGPSFFKQYVEECKALGFDTIELNAGSLKLPEEA 141
Query: 132 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191
LLR VRL+K++GL+AKP F+V F+ SDIP DRAFGAY+ +++E VEDVDLLIRRA
Sbjct: 142 LLRLVRLIKTSGLQAKPLFSVKFDSSDIPPSGDRAFGAYIVPVKQNSERVEDVDLLIRRA 201
Query: 192 ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYG 251
ERCLEAGADMIMID+DD+C+ ADSLRADI+AK++GRLGLEKTMFEA+NP TSEWF+RRYG
Sbjct: 202 ERCLEAGADMIMIDADDICQRADSLRADIVAKIVGRLGLEKTMFEASNPNTSEWFVRRYG 261
Query: 252 PKVNLFVDHSQVMDLECLRGRNL-GKSHRSV--LSSSYFLL 289
P+VNLFVDHS VM+LE LRG N+ G + + + S +FL+
Sbjct: 262 PRVNLFVDHSDVMNLERLRGFNMRGVCNSPLFGIGSPFFLM 302
|
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| ASPGD|ASPL0000047680 AN10197 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 111/279 (39%), Positives = 156/279 (55%)
Query: 11 FDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP 70
F R +KPR GVTE+R P+YT+ L DI E+MG VDGLKF+GGS SL P+
Sbjct: 57 FARSNPRPKKPRSQGVTEIRGPYYTVMGKR-YLADILETMGTHVDGLKFAGGSFSLFPEK 115
Query: 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRN-GP-SAFKEYVEDCKQVGF------------- 115
+ E++ AH+H VYVSTG WAEHL+ + P S F +Y+ C+ +GF
Sbjct: 116 PLRELIDLAHEHSVYVSTGGWAEHLLTHPDPTSVFDKYLTKCEDLGFVMLNLVPFRVLTL 175
Query: 116 ----DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171
D IEL+ G L IPE+ LR V V S GLKAKP+ + F G
Sbjct: 176 HHRFDVIELSSGFLSIPEDDWLRLVDKVHSYGLKAKPELGIQFGA-----------GGDT 224
Query: 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231
+ A + D L+ + L+AG + +MI+S+ + ++ S R D+++K++ L E
Sbjct: 225 SAAGLESLGTSDPGKLVNLGRKFLDAGVERLMIESEGITENVKSWRTDVVSKIMKELPPE 284
Query: 232 KTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLR 270
+ MFEA +P+ W+IR +G VNLFVDHSQ++ L LR
Sbjct: 285 RVMFEAADPQVYTWYIREFGIDVNLFVDHSQIVQLSGLR 323
|
|
| UNIPROTKB|Q5BDB6 AN1464.2 "Putative uncharacterized protein" [Aspergillus nidulans FGSC A4 (taxid:227321)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 3.7e-44, P = 3.7e-44
Identities = 111/279 (39%), Positives = 156/279 (55%)
Query: 11 FDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP 70
F R +KPR GVTE+R P+YT+ L DI E+MG VDGLKF+GGS SL P+
Sbjct: 57 FARSNPRPKKPRSQGVTEIRGPYYTVMGKR-YLADILETMGTHVDGLKFAGGSFSLFPEK 115
Query: 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRN-GP-SAFKEYVEDCKQVGF------------- 115
+ E++ AH+H VYVSTG WAEHL+ + P S F +Y+ C+ +GF
Sbjct: 116 PLRELIDLAHEHSVYVSTGGWAEHLLTHPDPTSVFDKYLTKCEDLGFVMLNLVPFRVLTL 175
Query: 116 ----DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171
D IEL+ G L IPE+ LR V V S GLKAKP+ + F G
Sbjct: 176 HHRFDVIELSSGFLSIPEDDWLRLVDKVHSYGLKAKPELGIQFGA-----------GGDT 224
Query: 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231
+ A + D L+ + L+AG + +MI+S+ + ++ S R D+++K++ L E
Sbjct: 225 SAAGLESLGTSDPGKLVNLGRKFLDAGVERLMIESEGITENVKSWRTDVVSKIMKELPPE 284
Query: 232 KTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLR 270
+ MFEA +P+ W+IR +G VNLFVDHSQ++ L LR
Sbjct: 285 RVMFEAADPQVYTWYIREFGIDVNLFVDHSQIVQLSGLR 323
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| UNIPROTKB|Q83AE7 CBU_1954 "(2R)-phospho-3-sulfolactate synthase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 76/263 (28%), Positives = 136/263 (51%)
Query: 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRA 79
KPR G E+R P+Y + E + E+ G ++DGLKF+GG +L+ ++ A
Sbjct: 21 KPRHTGQVEIRGPYYEAFTVQQ-FEALLETWGYYIDGLKFAGGIQALLDAKTVKAFTDLA 79
Query: 80 HQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY---- 135
H+++VYV+TG + E ++ P+ Y+E+ K +GFD +E++ G E + L +
Sbjct: 80 HKYNVYVNTGGFIERIVIQNPNNVDRYLEETKALGFDVVEVSSGMFERAGDFSLDFQIDV 139
Query: 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195
V+ ++ GLK KP+ +M S + +Y + +S + VD I ER
Sbjct: 140 VKRIQKIGLKPKPEITIM---SGVGGGVKEI--SYQEKLKQS----KTVDQFIEEGERFF 190
Query: 196 EAGADMIMIDSDDVCKH-AD--SLRADIIAKVIGRLGLEKTMFEATNP-----RTSEWFI 247
EAGA +MI+S+ + + AD + R D+I ++ + G EK MFE + +T +W++
Sbjct: 191 EAGAHTLMIESEGITEGIADPKNWRKDVIFALVEKFGHEKLMFEVSPEDDEARQTFKWYL 250
Query: 248 RRYGPKVNLFVDHSQVMDLECLR 270
+ +NL ++ +++ R
Sbjct: 251 KEVSRDINLMMNSKNIVEFNAWR 273
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| TIGR_CMR|CBU_1954 CBU_1954 "hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 76/263 (28%), Positives = 136/263 (51%)
Query: 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRA 79
KPR G E+R P+Y + E + E+ G ++DGLKF+GG +L+ ++ A
Sbjct: 21 KPRHTGQVEIRGPYYEAFTVQQ-FEALLETWGYYIDGLKFAGGIQALLDAKTVKAFTDLA 79
Query: 80 HQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY---- 135
H+++VYV+TG + E ++ P+ Y+E+ K +GFD +E++ G E + L +
Sbjct: 80 HKYNVYVNTGGFIERIVIQNPNNVDRYLEETKALGFDVVEVSSGMFERAGDFSLDFQIDV 139
Query: 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195
V+ ++ GLK KP+ +M S + +Y + +S + VD I ER
Sbjct: 140 VKRIQKIGLKPKPEITIM---SGVGGGVKEI--SYQEKLKQS----KTVDQFIEEGERFF 190
Query: 196 EAGADMIMIDSDDVCKH-AD--SLRADIIAKVIGRLGLEKTMFEATNP-----RTSEWFI 247
EAGA +MI+S+ + + AD + R D+I ++ + G EK MFE + +T +W++
Sbjct: 191 EAGAHTLMIESEGITEGIADPKNWRKDVIFALVEKFGHEKLMFEVSPEDDEARQTFKWYL 250
Query: 248 RRYGPKVNLFVDHSQVMDLECLR 270
+ +NL ++ +++ R
Sbjct: 251 KEVSRDINLMMNSKNIVEFNAWR 273
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 289 289 0.00088 115 3 11 22 0.36 34
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 606 (64 KB)
Total size of DFA: 218 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.59u 0.12s 22.71t Elapsed: 00:00:01
Total cpu time: 22.59u 0.12s 22.71t Elapsed: 00:00:01
Start: Sat May 11 05:38:27 2013 End: Sat May 11 05:38:28 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 4.4.1.19 | LOW CONFIDENCE prediction! |
| 3rd Layer | 4.4.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00012839001 | SubName- Full=Chromosome undetermined scaffold_405, whole genome shotgun sequence; (286 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 289 | |||
| pfam02679 | 245 | pfam02679, ComA, (2R)-phospho-3-sulfolactate synth | 2e-90 | |
| COG1809 | 258 | COG1809, COG1809, (2R)-phospho-3-sulfolactate synt | 2e-43 | |
| TIGR03849 | 237 | TIGR03849, arch_ComA, phosphosulfolactate synthase | 3e-18 | |
| pfam13654 | 509 | pfam13654, AAA_32, AAA domain | 0.004 |
| >gnl|CDD|190389 pfam02679, ComA, (2R)-phospho-3-sulfolactate synthase (ComA) | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 2e-90
Identities = 93/267 (34%), Positives = 140/267 (52%), Gaps = 32/267 (11%)
Query: 15 EDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEE 74
+R EKPRR G+T + LED+ ES G ++D LKF G+ +LMP+ ++E
Sbjct: 4 PERPEKPRRTGLTMVLDKGLGPRF----LEDLLESAGDYIDFLKFGWGTSALMPEDILKE 59
Query: 75 VVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+ AH+H VYV TG + + F EY+ +CK++GFD IE++ G++E+PEE LR
Sbjct: 60 KIDLAHEHGVYVYTGGTLFEIAIS-QGKFDEYLRECKELGFDAIEISDGTIELPEEERLR 118
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194
+R K AG K + V + + D LI + ER
Sbjct: 119 LIRKAKKAGFKVLSE---------------------VGKKDPELDSSLTPDELIEQIERD 157
Query: 195 LEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRR 249
LEAGAD ++I++ + +R D++ +++ RLGLEK +FEA + WFI+R
Sbjct: 158 LEAGADKVIIEARESGGVGLYDSDGEVRTDLVEEILERLGLEKLIFEAPQKKQQVWFIKR 217
Query: 250 YGPKVNL-FVDHSQVMDLECLRGRNLG 275
+GP VNL + S+V+ LE LR G
Sbjct: 218 FGPNVNLGNIPPSEVLALETLRRGLRG 244
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In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyzes the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyzes the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalyzed reaction is analogous to those reactions catalyzed by beta-elimination enzymes that proceed through an enolate intermediate. Length = 245 |
| >gnl|CDD|224722 COG1809, COG1809, (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 2e-43
Identities = 65/274 (23%), Positives = 119/274 (43%), Gaps = 35/274 (12%)
Query: 9 KSFD-EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM 67
+F+ R EKPR FG+T + +ED+ + G +VD +KF G+ SL+
Sbjct: 2 NAFEFLPPARPEKPRTFGMTVVLDKGLGPRF----VEDVLKVAGDYVDFVKFGWGTSSLI 57
Query: 68 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI 127
K ++E + ++D+YV G I EY+ + K++GF+ IE++ G++ +
Sbjct: 58 DKDQVKEKIDMYKENDIYVFPGG-TLFEIAYSQDKVDEYLNEAKELGFEAIEISNGTIPM 116
Query: 128 PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187
E R + G + P + D A D
Sbjct: 117 STEEKCRLIERAVDEGFMVLSEVG-----KKDP-ESDSA---------------LSPDDR 155
Query: 188 IRRAERCLEAGADMIMIDSDD------VCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 241
++ ++AGA+ ++ ++ + + + +R + +I LG+ + +FEA
Sbjct: 156 VKLINDDVDAGAEYVIAEARESGKEIGITDNEGEVREGELDSIIKGLGINRVIFEAPQKS 215
Query: 242 TSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNL 274
WFI + GP+VNL + +++ LE LR R L
Sbjct: 216 QQVWFILKIGPEVNLANIPFEEIIALETLR-RGL 248
|
Length = 258 |
| >gnl|CDD|163561 TIGR03849, arch_ComA, phosphosulfolactate synthase | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 3e-18
Identities = 59/245 (24%), Positives = 106/245 (43%), Gaps = 35/245 (14%)
Query: 44 EDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSA 102
ED + G ++ +KF G+ +L+ + ++E ++ + + V G E G
Sbjct: 15 EDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--K 72
Query: 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162
F EY+ +C ++GF+ +E++ GS+EI E + K G F V+ S++
Sbjct: 73 FDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNG------FMVL---SEVGKK 123
Query: 163 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH------ADSL 216
D I+ + LEAGAD ++I+ + K+ ++
Sbjct: 124 SPEKDSEL------------TPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNV 171
Query: 217 RADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLEC----LRG 271
+ D + + + + K +FEA FI ++GP VNL + +V+ LE LRG
Sbjct: 172 KEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISLETLRRGLRG 231
Query: 272 RNLGK 276
GK
Sbjct: 232 DTFGK 236
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679 [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Energy metabolism, Methanogenesis]. Length = 237 |
| >gnl|CDD|222290 pfam13654, AAA_32, AAA domain | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.004
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 205 DSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLFVDHS 261
D V + D+++ DI+ + L ++ A+ RRY +VNL VD+S
Sbjct: 234 DLPKVLAYLDAVQEDILENLDLFLEEDEAEAAASGAEDQF---RRY--QVNLLVDNS 285
|
This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop. Length = 509 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 289 | |||
| PF02679 | 244 | ComA: (2R)-phospho-3-sulfolactate synthase (ComA); | 100.0 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 100.0 | |
| COG1809 | 258 | (2R)-phospho-3-sulfolactate synthase (PSL synthase | 100.0 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 97.39 | |
| PRK13209 | 283 | L-xylulose 5-phosphate 3-epimerase; Reviewed | 97.39 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 97.24 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 97.12 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 96.95 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 96.92 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 96.91 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 96.9 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 96.83 | |
| PRK13210 | 284 | putative L-xylulose 5-phosphate 3-epimerase; Revie | 96.83 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 96.81 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 96.76 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 96.73 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 96.72 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 96.7 | |
| TIGR00542 | 279 | hxl6Piso_put hexulose-6-phosphate isomerase, putat | 96.56 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 96.45 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 96.37 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 96.28 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 96.26 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 96.23 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 96.21 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 96.16 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 96.09 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 96.04 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 96.02 | |
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 96.0 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 95.95 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 95.89 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 95.77 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 95.76 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 95.74 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 95.74 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 95.71 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 95.68 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 95.64 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 95.62 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 95.5 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 95.5 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 95.48 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 95.47 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 95.41 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 95.39 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 95.36 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 95.29 | |
| PRK01060 | 281 | endonuclease IV; Provisional | 95.25 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 95.23 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 95.23 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 95.22 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 95.2 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 95.19 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 95.15 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 95.15 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 95.11 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 95.09 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 95.06 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 94.91 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 94.87 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 94.84 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 94.82 | |
| PRK09856 | 275 | fructoselysine 3-epimerase; Provisional | 94.82 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 94.81 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 94.81 | |
| TIGR03234 | 254 | OH-pyruv-isom hydroxypyruvate isomerase. This enzy | 94.64 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 94.64 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 94.61 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 94.6 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 94.58 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 94.48 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 94.46 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 94.45 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 94.45 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 94.45 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 94.33 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 94.3 | |
| COG1082 | 274 | IolE Sugar phosphate isomerases/epimerases [Carboh | 94.21 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 94.19 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 94.18 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 94.11 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 93.98 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 93.91 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 93.9 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 93.9 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 93.89 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 93.89 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 93.84 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 93.81 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 93.55 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 93.55 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 93.54 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 93.5 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 93.44 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 93.28 | |
| cd06547 | 339 | GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENG | 93.27 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 93.27 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 93.25 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 93.24 | |
| PRK07094 | 323 | biotin synthase; Provisional | 93.23 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 93.08 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 92.98 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 92.97 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 92.95 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 92.81 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 92.75 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 92.64 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 92.51 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 92.47 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 92.29 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 92.21 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 92.2 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 92.18 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 92.18 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 92.17 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 92.13 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 92.06 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 91.99 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.97 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 91.96 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 91.89 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 91.86 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 91.84 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 91.82 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 91.81 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 91.76 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 91.73 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 91.71 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 91.71 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 91.63 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 91.55 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 91.55 | |
| COG3623 | 287 | SgaU Putative L-xylulose-5-phosphate 3-epimerase [ | 91.54 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 91.45 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 91.45 | |
| TIGR02495 | 191 | NrdG2 anaerobic ribonucleoside-triphosphate reduct | 91.39 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 91.36 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 91.34 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 91.33 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 91.31 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 91.29 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 91.29 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 91.16 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 91.14 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 91.04 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 90.89 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 90.87 | |
| PRK10812 | 265 | putative DNAse; Provisional | 90.86 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 90.84 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 90.66 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 90.52 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 90.43 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 90.43 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 90.34 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 90.33 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 90.3 | |
| smart00518 | 273 | AP2Ec AP endonuclease family 2. These endonuclease | 90.26 | |
| cd00019 | 279 | AP2Ec AP endonuclease family 2; These endonuclease | 90.24 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 90.22 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 90.15 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 90.05 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 90.01 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 89.94 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 89.9 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 89.85 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 89.78 | |
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 89.69 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 89.66 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 89.41 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 89.35 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 89.29 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 89.11 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 89.11 | |
| PRK11449 | 258 | putative deoxyribonuclease YjjV; Provisional | 89.02 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 89.01 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 88.91 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 88.89 | |
| cd00946 | 345 | FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis | 88.71 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 88.7 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 88.67 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 88.64 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 88.58 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 88.4 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 88.39 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 88.18 | |
| PRK09997 | 258 | hydroxypyruvate isomerase; Provisional | 88.17 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 88.01 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 87.85 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 87.84 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 87.84 | |
| PRK08508 | 279 | biotin synthase; Provisional | 87.78 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 87.58 | |
| PF01261 | 213 | AP_endonuc_2: Xylose isomerase-like TIM barrel; In | 87.57 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 87.56 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 87.46 | |
| PRK15452 | 443 | putative protease; Provisional | 87.38 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 87.37 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 87.37 | |
| TIGR03581 | 236 | EF_0839 conserved hypothetical protein EF_0839/AHA | 87.33 | |
| PLN02591 | 250 | tryptophan synthase | 87.15 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 87.12 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 87.06 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 86.95 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 86.92 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 86.81 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 86.45 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 86.4 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 86.39 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 86.36 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 85.93 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 85.82 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 85.81 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 85.79 | |
| PRK09989 | 258 | hypothetical protein; Provisional | 85.64 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 85.49 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 85.43 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 85.41 | |
| PRK15108 | 345 | biotin synthase; Provisional | 85.29 | |
| cd08574 | 252 | GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste | 84.92 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 84.88 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 84.75 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 84.75 | |
| PF04055 | 166 | Radical_SAM: Radical SAM superfamily; InterPro: IP | 84.57 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 84.45 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 84.4 | |
| PF00215 | 226 | OMPdecase: Orotidine 5'-phosphate decarboxylase / | 83.98 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 83.85 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 83.8 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 83.62 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 83.57 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 83.41 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 83.4 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 83.28 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 83.26 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 83.23 | |
| cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of th | 83.22 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 83.0 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 82.87 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 82.86 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 82.58 | |
| TIGR03239 | 249 | GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co | 82.58 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 82.58 | |
| TIGR01501 | 134 | MthylAspMutase methylaspartate mutase, S subunit. | 82.51 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 82.41 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 82.34 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related | 82.31 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 82.26 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 82.26 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 82.19 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 82.01 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 82.0 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 81.9 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 81.87 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 81.52 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 81.49 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 81.45 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 81.37 | |
| TIGR01210 | 313 | conserved hypothetical protein TIGR01210. This fam | 81.21 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 81.2 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 81.03 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 80.94 | |
| smart00481 | 67 | POLIIIAc DNA polymerase alpha chain like domain. D | 80.89 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 80.88 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 80.71 | |
| TIGR00676 | 272 | fadh2 5,10-methylenetetrahydrofolate reductase, pr | 80.62 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 80.4 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 80.33 | |
| TIGR03822 | 321 | AblA_like_2 lysine-2,3-aminomutase-related protein | 80.26 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 80.21 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 80.11 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 80.1 |
| >PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-94 Score=657.17 Aligned_cols=237 Identities=40% Similarity=0.681 Sum_probs=197.0
Q ss_pred CCCCCCCCCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cH
Q 022982 13 EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DW 91 (289)
Q Consensus 13 ~~~~R~~KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tl 91 (289)
++|.|++|||++|+|||+|||+ |+++++|+|++||+|||++|||||||+|||++.|++||++||+|||+|||| |+
T Consensus 1 ~~~~R~~KPR~~GlT~v~Dkgl----g~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl 76 (244)
T PF02679_consen 1 NLPERPEKPRSRGLTMVIDKGL----GLRYLEDLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTL 76 (244)
T ss_dssp -TTGGG-SS-SSS-EEEEESS------HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHH
T ss_pred CCCCCCCCCCCCCcEEEecCCC----CHHHHHHHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHH
Confidence 4799999999999999999998 888999999999999999999999999999999999999999999999997 69
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022982 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 92 fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
||+|++|+ ++++|+++||++||++|||||||++||+++|+++|++++++||+|+||||+|++..+ .
T Consensus 77 ~E~a~~q~--~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~------~------ 142 (244)
T PF02679_consen 77 FEVAYQQG--KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDPESD------F------ 142 (244)
T ss_dssp HHHHHHTT---HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHH------T------
T ss_pred HHHHHhcC--hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCCCchhc------c------
Confidence 99999999 999999999999999999999999999999999999999999999999999875321 1
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc-----ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHH
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWF 246 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-----GI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~qQ~~~ 246 (289)
..|++++|+++++||+|||++|||||| ||||++|+||+|++++|++++|++|||||||+|+||+||
T Consensus 143 ---------~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~~~~lifEAp~k~qq~~~ 213 (244)
T PF02679_consen 143 ---------SLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIERLGLEKLIFEAPQKEQQEWF 213 (244)
T ss_dssp ---------T--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHHHHTTS-GGGEEEE--SHHHHHHH
T ss_pred ---------cCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHHhCCHhHEEEeCCCHhHHHHH
Confidence 225788899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHhCCCcccc-cCCCCchhhhhhhcccCCC
Q 022982 247 IRRYGPKVNLF-VDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 247 I~~fG~~VNLg-I~~~eVl~LE~LR~g~~G~ 276 (289)
|++|||||||| |+|+||++|||||+|+||.
T Consensus 214 I~~~G~~VNLgNI~~~eVl~LE~LR~GLrgD 244 (244)
T PF02679_consen 214 IKRFGPNVNLGNIAPSEVLALETLRRGLRGD 244 (244)
T ss_dssp HHHH-TT--EEEEEGGGHHHHHHHHCT-SGG
T ss_pred HHHhCCCcCcccCCHHHHHHHHHHhccccCC
Confidence 99999999998 9999999999999999983
|
Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A. |
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-88 Score=614.32 Aligned_cols=226 Identities=24% Similarity=0.419 Sum_probs=215.5
Q ss_pred ceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHH
Q 022982 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFK 104 (289)
Q Consensus 26 lT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~ 104 (289)
+|||+|||| |+++++|+|++||+|||++||||||++|||++.|||||++||+|||+|||| ||||+|+.|+ +++
T Consensus 1 lT~v~dkgl----~~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~--~~~ 74 (237)
T TIGR03849 1 ITMVLDKGL----PPKFVEDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--KFD 74 (237)
T ss_pred CceEecCCC----CHHHHHHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhh--hHH
Confidence 699999999 888999999999999999999999999999999999999999999999997 6999999998 999
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
+|+++||++||++|||||||++||+++|+++|++++++||+|+||||+|++.. +. ..++
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~------~~---------------~~~~ 133 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEK------DS---------------ELTP 133 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcc------cc---------------cCCH
Confidence 99999999999999999999999999999999999999999999999998521 11 1258
Q ss_pred HHHHHHHHHHHHccCcEEEEecc------ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCcccc-
Q 022982 185 DLLIRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF- 257 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiEar------GI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~qQ~~~I~~fG~~VNLg- 257 (289)
+++|+++++||+|||++|||||| |||+++|+||+|++++|++++|++|||||||+|+||+|||++|||||||+
T Consensus 134 ~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~N 213 (237)
T TIGR03849 134 DDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGN 213 (237)
T ss_pred HHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCccccc
Confidence 99999999999999999999995 89999999999999999999999999999999999999999999999997
Q ss_pred cCCCCchhhhhhhcccCCCcc
Q 022982 258 VDHSQVMDLECLRGRNLGKSH 278 (289)
Q Consensus 258 I~~~eVl~LE~LR~g~~G~~~ 278 (289)
|+|+||++|||||+|+||.++
T Consensus 214 I~~~evi~LE~LR~GLrgDT~ 234 (237)
T TIGR03849 214 IPPEEVISLETLRRGLRGDTF 234 (237)
T ss_pred CCHHHHHHHHHHhcccccccc
Confidence 999999999999999999765
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-83 Score=574.62 Aligned_cols=244 Identities=26% Similarity=0.470 Sum_probs=230.1
Q ss_pred ccccCC-CCCCCCCCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCcee
Q 022982 8 WKSFDE-YEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV 86 (289)
Q Consensus 8 ~~~f~~-~~~R~~KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v 86 (289)
|+.|.- .|.|++|||.+|+|+|+|||| ||+.++|+|++||+|||++||||||+.|.+++.+++||++||+|||+|
T Consensus 1 m~aF~f~~~~r~~kPr~~G~T~vldkg~----~p~f~~D~~~vagdyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v 76 (258)
T COG1809 1 MNAFEFLPPARPEKPRTFGMTVVLDKGL----GPRFVEDVLKVAGDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYV 76 (258)
T ss_pred CCcccccCCCCCCCCccCCeEEEEeCCC----ChHHHHHHHHhhhhheeeeeecccccccccHHHHHHHHHHHHHcCcee
Confidence 345664 467999999999999999999 888999999999999999999999999999999999999999999999
Q ss_pred cCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccc
Q 022982 87 STG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR 165 (289)
Q Consensus 87 ~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~ 165 (289)
||| |+||+++.|+ +|++|+++|+++||++|||||||++|+.++||++|+++.+.||+|+||+|+|.+. .|+
T Consensus 77 ~pGGtlfe~a~~~~--kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~vlsEvGkk~~e------~~~ 148 (258)
T COG1809 77 FPGGTLFEIAYSQD--KVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMVLSEVGKKDPE------SDS 148 (258)
T ss_pred cCCceEEEeehhcc--cHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEEehhhcccCcc------hhh
Confidence 996 7999999999 9999999999999999999999999999999999999999999999999999863 233
Q ss_pred ccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc------ccccCCCCccHHHHHHHHhccCCCceEEecCC
Q 022982 166 AFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATN 239 (289)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar------GI~d~~G~~r~d~v~~ii~~l~~eklifEAP~ 239 (289)
. .+++++++.+..|++|||++||+||| |||++.|+||++.++.|++++|++|+|||||+
T Consensus 149 ~---------------l~~~d~~k~i~~dvdaGa~~vi~eAresg~~~Gi~~~~g~~r~~~~~~ii~~l~i~rviFEAp~ 213 (258)
T COG1809 149 A---------------LSPDDRVKLINDDVDAGAEYVIAEARESGKEIGITDNEGEVREGELDSIIKGLGINRVIFEAPQ 213 (258)
T ss_pred h---------------cChHHHHHHHHHHHHcchHHhhhhhhhhccccCccccccchhhhHHHHHHhcCCchheeeecCC
Confidence 2 14889999999999999999999998 79999999999999999999999999999999
Q ss_pred chhHHHHHHHhCCCcccc-cCCCCchhhhhhhcccCCCcc
Q 022982 240 PRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSH 278 (289)
Q Consensus 240 k~qQ~~~I~~fG~~VNLg-I~~~eVl~LE~LR~g~~G~~~ 278 (289)
|.||+|||++|||+|||+ |||+||++|||||+|+||.+.
T Consensus 214 k~qq~~fI~k~GpevNLanip~~eii~LEtLR~gLrgdT~ 253 (258)
T COG1809 214 KSQQVWFILKIGPEVNLANIPFEEIIALETLRRGLRGDTF 253 (258)
T ss_pred cchhhhHHHHhCCcCcccCCCHHHHHHHHHHHhhccccch
Confidence 999999999999999999 999999999999999888554
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0042 Score=60.06 Aligned_cols=167 Identities=15% Similarity=0.149 Sum_probs=124.4
Q ss_pred CCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022982 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (289)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (289)
.=+++++.||. + ..+|+-.....-+|.+.++.. ....+.+++-++.+|++|..++.. ++.+....++.+
T Consensus 78 ~~~~~ll~pg~----~--~~~dl~~a~~~gvd~iri~~~---~~e~~~~~~~i~~ak~~G~~v~~~--l~~a~~~~~e~l 146 (337)
T PRK08195 78 AKIAALLLPGI----G--TVDDLKMAYDAGVRVVRVATH---CTEADVSEQHIGLARELGMDTVGF--LMMSHMAPPEKL 146 (337)
T ss_pred CEEEEEeccCc----c--cHHHHHHHHHcCCCEEEEEEe---cchHHHHHHHHHHHHHCCCeEEEE--EEeccCCCHHHH
Confidence 45677788876 2 356776667778999998864 445568999999999999877653 233334455678
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
.++.+.+.++|.++|-|.|-.-.+.+++-.++|+.++++ +.....+|.... .|
T Consensus 147 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H~H--------------------------nn 199 (337)
T PRK08195 147 AEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAA-LKPDTQVGFHGH--------------------------NN 199 (337)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cCCCCeEEEEeC--------------------------CC
Confidence 888889999999999999999999999999999999984 211223444321 12
Q ss_pred HHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhccCC
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
...-+-.....++|||+ +|++. |+=...||..++.+-..+++.|.
T Consensus 200 lGla~ANslaAi~aGa~--~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~ 246 (337)
T PRK08195 200 LGLGVANSLAAVEAGAT--RIDGSLAGLGAGAGNTPLEVLVAVLDRMGW 246 (337)
T ss_pred cchHHHHHHHHHHhCCC--EEEecChhhcccccCccHHHHHHHHHhcCC
Confidence 33346777788999999 67886 89889999999988777766553
|
|
| >PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0027 Score=58.14 Aligned_cols=159 Identities=17% Similarity=0.255 Sum_probs=93.6
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCC
Q 022982 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPS 161 (289)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~~evg~ 161 (289)
|.+|+++.++ -.+++.++.++++||++||++-.. ..++.++..++-+.+++.|+++-+-- +...+. ..+
T Consensus 11 ~~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~-~~~- 87 (283)
T PRK13209 11 GIYEKALPAG-ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRF-PLG- 87 (283)
T ss_pred eeecccCCCC-CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEeccccccc-CCC-
Confidence 6789999765 379999999999999999998543 24477778888888889999865311 110000 000
Q ss_pred ccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCC--Ccc---H---HHHHHHHhccCCCce
Q 022982 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHAD--SLR---A---DIIAKVIGRLGLEKT 233 (289)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G--~~r---~---d~v~~ii~~l~~ekl 233 (289)
..|+.. .....+.+-+.++..-+.|+.+|.+-+........ ... . ..+.++++..|+ +|
T Consensus 88 ~~~~~~------------r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV-~i 154 (283)
T PRK13209 88 SEDDAV------------RAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASV-TL 154 (283)
T ss_pred CCCHHH------------HHHHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCC-EE
Confidence 001100 00113445566677778999999986542211111 100 1 223334444454 57
Q ss_pred EEec---C---CchhHHHHHHHhC-CCcccccCCCCch
Q 022982 234 MFEA---T---NPRTSEWFIRRYG-PKVNLFVDHSQVM 264 (289)
Q Consensus 234 ifEA---P---~k~qQ~~~I~~fG-~~VNLgI~~~eVl 264 (289)
.+|. + ...+-..+++..| |+|.|..|+.++.
T Consensus 155 ~iE~~~~~~~~~~~~~~~ll~~v~~~~lgl~~D~~h~~ 192 (283)
T PRK13209 155 AFEIMDTPFMNSISKALGYAHYLNSPWFQLYPDIGNLS 192 (283)
T ss_pred EEeecCCcccCCHHHHHHHHHHhCCCccceEeccchHH
Confidence 7775 1 3334556788888 5666656766655
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0045 Score=59.78 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=123.9
Q ss_pred CCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022982 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (289)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (289)
.=+++++.||. + ..+|+=.....-||.+-++.. ....+.+++-|+.+|+.|..++.. ++.+....|+.+
T Consensus 77 ~~~~~ll~pg~----~--~~~dl~~a~~~gvd~iri~~~---~~e~d~~~~~i~~ak~~G~~v~~~--l~~s~~~~~e~l 145 (333)
T TIGR03217 77 AKVAVLLLPGI----G--TVHDLKAAYDAGARTVRVATH---CTEADVSEQHIGMARELGMDTVGF--LMMSHMTPPEKL 145 (333)
T ss_pred CEEEEEeccCc----c--CHHHHHHHHHCCCCEEEEEec---cchHHHHHHHHHHHHHcCCeEEEE--EEcccCCCHHHH
Confidence 45788888876 2 346665555567999998864 445568999999999999877642 233334556688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
.++.+.+.+.|.++|-|.|-.-.+.+++-.++|+.++++ +..-.++|.... .|
T Consensus 146 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H~H--------------------------nn 198 (333)
T TIGR03217 146 AEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAV-LKPETQVGFHAH--------------------------HN 198 (333)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHh-CCCCceEEEEeC--------------------------CC
Confidence 888899999999999999999999999999999999974 221123555321 12
Q ss_pred HHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhccCC
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
...-+-.....++|||++ |++. |+=...||..++.+-..++..|.
T Consensus 199 lGla~ANslaAi~aGa~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~ 245 (333)
T TIGR03217 199 LSLAVANSIAAIEAGATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGW 245 (333)
T ss_pred CchHHHHHHHHHHhCCCE--EEeecccccccccCccHHHHHHHHHhcCC
Confidence 333467777889999998 6775 99999999999988877776553
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0068 Score=56.74 Aligned_cols=165 Identities=12% Similarity=0.116 Sum_probs=117.3
Q ss_pred CCCCCCCchhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHH
Q 022982 32 PHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (289)
Q Consensus 32 kGl~~~~g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~ 109 (289)
+|+... +....++.++.+.+. +|.+-+...++-+ +.+++-++.++++|..+... .. +.+-...++.+.++.+.
T Consensus 83 ~~~~~~-p~~~~~~di~~~~~~g~~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~i~~-~~~~~~~~~~~~~~~~~ 157 (275)
T cd07937 83 VGYRHY-PDDVVELFVEKAAKNGIDIFRIFDALNDV---RNLEVAIKAVKKAGKHVEGAICY-TGSPVHTLEYYVKLAKE 157 (275)
T ss_pred cCccCC-CcHHHHHHHHHHHHcCCCEEEEeecCChH---HHHHHHHHHHHHCCCeEEEEEEe-cCCCCCCHHHHHHHHHH
Confidence 455433 344567777766665 8999998766654 57999999999999876541 11 11112344578888899
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
+.++|.+.|-+.|-.-.+.+++-.++|+.++++ +. ..+++.+ .. |...-..
T Consensus 158 ~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~-Hn-------------------------d~GlA~a 208 (275)
T cd07937 158 LEDMGADSICIKDMAGLLTPYAAYELVKALKKE-VG--LPIHLHT-HD-------------------------TSGLAVA 208 (275)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-CC--CeEEEEe-cC-------------------------CCChHHH
Confidence 999999999999999999999999999999985 11 2344432 11 1223367
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCC
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
.+...++|||++|=.=--|+=+..||..++.+-..++..+.
T Consensus 209 N~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g~ 249 (275)
T cd07937 209 TYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTGR 249 (275)
T ss_pred HHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccCC
Confidence 77778999999754444589888999999988777765543
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.014 Score=53.81 Aligned_cols=152 Identities=18% Similarity=0.232 Sum_probs=110.9
Q ss_pred HHHHHhhcccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHH
Q 022982 44 EDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
+|+=......+|.+.+...+|-.+.+ +.+++-++.++++|..|+.+- |.+-...++.+.++.+.+.+
T Consensus 73 ~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~ 150 (259)
T cd07939 73 EDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA--EDASRADPDFLIEFAEVAQE 150 (259)
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee--ccCCCCCHHHHHHHHHHHHH
Confidence 34333344568999998877766433 357789999999999887653 23333445678888889999
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHH
Q 022982 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (289)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 192 (289)
.|.+.|-+.|-+-.+.+++-.++++.+++. +. ..++..+. . |...-.-.+-
T Consensus 151 ~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~H-n-------------------------~~Gla~An~l 201 (259)
T cd07939 151 AGADRLRFADTVGILDPFTTYELIRRLRAA-TD--LPLEFHAH-N-------------------------DLGLATANTL 201 (259)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cC--CeEEEEec-C-------------------------CCChHHHHHH
Confidence 999999999999999999999999999974 22 23555331 1 1223356777
Q ss_pred HHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhcc
Q 022982 193 RCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 193 ~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l 228 (289)
..+++||++ |++. |+=+..||.-++.+-..++..
T Consensus 202 aAi~aG~~~--vd~s~~G~G~~aGN~~tE~lv~~l~~~ 237 (259)
T cd07939 202 AAVRAGATH--VSVTVNGLGERAGNAALEEVVMALKHL 237 (259)
T ss_pred HHHHhCCCE--EEEecccccccccCcCHHHHHHHHHHh
Confidence 789999986 5886 888999999998877766544
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.011 Score=56.83 Aligned_cols=124 Identities=17% Similarity=0.278 Sum_probs=92.1
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc-----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE----- 126 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~----- 126 (289)
-|+.+-||+||..+.|.+.+++.++..+++ +.++ .|+.+.-+|+.+ ++.++.+++.||+.|.|+--+.+
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~---~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~ 125 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPY---LSKD--CEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLK 125 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh---cCCC--ceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 589999999999999999999999999988 2333 244444455543 78999999999999998776662
Q ss_pred -----CChhHHHHHHHHHHHcCCccc-ceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 127 -----IPEETLLRYVRLVKSAGLKAK-PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~-~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
-+.++-.+.|+.+++.||..+ ..+-. +. |. +|.+.+.+.++..++.|++
T Consensus 126 ~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~--Gl----------------Pg-------qt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 126 FLGRIHSQKQIIKAIENAKKAGFENISIDLIY--DT----------------PL-------DNKKLLKEELKLAKELPIN 180 (350)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CC----------------CC-------CCHHHHHHHHHHHHhcCCC
Confidence 345666789999999998622 22211 11 11 1478888999999999999
Q ss_pred EEEEec
Q 022982 201 MIMIDS 206 (289)
Q Consensus 201 ~ViiEa 206 (289)
+|-+-.
T Consensus 181 ~is~y~ 186 (350)
T PRK08446 181 HLSAYS 186 (350)
T ss_pred EEEecc
Confidence 886533
|
|
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0082 Score=58.33 Aligned_cols=121 Identities=17% Similarity=0.374 Sum_probs=89.7
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (289)
..|+-+-||+||..+.|.+.|++.++..+++.. .|+.+.-+|+.+ ++.++.+++.||+.|.|.--|.+
T Consensus 57 ~~i~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~-------~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L 129 (370)
T PRK06294 57 HFIDTVFFGGGTPSLVPPALIQDILKTLEAPHA-------TEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLL 129 (370)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHhCCC-------CeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHH
Confidence 458899999999999999999999999987622 133334466665 78999999999999988776662
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 127 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
-+.++-.+.|+.+++.||. +.-.+ -.+. |. +|.+++.+.++..++.+.
T Consensus 130 ~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dl--i~Gl----------------Pg-------qt~~~~~~~l~~~~~l~~ 184 (370)
T PRK06294 130 KLLGRTHSSSKAIDAVQECSEHGFSNLSIDL--IYGL----------------PT-------QSLSDFIVDLHQAITLPI 184 (370)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeEEEEe--ecCC----------------CC-------CCHHHHHHHHHHHHccCC
Confidence 3455667788999999986 22221 1111 11 148888999999999999
Q ss_pred cEEEE
Q 022982 200 DMIMI 204 (289)
Q Consensus 200 ~~Vii 204 (289)
++|-+
T Consensus 185 ~~is~ 189 (370)
T PRK06294 185 THISL 189 (370)
T ss_pred CeEEE
Confidence 87754
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0044 Score=55.98 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=107.1
Q ss_pred ccEEEecCcccccc-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHH--hCCchHHHHHHHHHHcCCCEEEe
Q 022982 54 VDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIR--NGPSAFKEYVEDCKQVGFDTIEL 120 (289)
Q Consensus 54 ID~lKfg~GTs~l~-----------p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~--qg~~~~~~yl~~~k~lGF~~IEI 120 (289)
+|.+-+...++-.+ ..+.+.+-++.++++|+.+... +|.+.. .+++.+.++++.+.++|.+.|-+
T Consensus 88 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~--~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 88 VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGS--LEDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--EEeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 78888887766211 1236888999999999977653 122223 56668999999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
.|-+-.+.+++..++|+.+++.-=. ..++..+ . .|...-+..+-..++|||+
T Consensus 166 ~Dt~G~~~P~~v~~li~~l~~~~~~--~~~~~H~-H-------------------------n~~gla~an~laA~~aG~~ 217 (265)
T cd03174 166 KDTVGLATPEEVAELVKALREALPD--VPLGLHT-H-------------------------NTLGLAVANSLAALEAGAD 217 (265)
T ss_pred chhcCCcCHHHHHHHHHHHHHhCCC--CeEEEEe-C-------------------------CCCChHHHHHHHHHHcCCC
Confidence 9999999999999999999985211 2344422 1 1233347778888999997
Q ss_pred EEEEecc--ccccCCCCccHHHHHHHHhccC
Q 022982 201 MIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 201 ~ViiEar--GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
+ |++- |+=+..||..++.+-..++..+
T Consensus 218 ~--id~s~~G~G~~~Gn~~~e~~~~~l~~~~ 246 (265)
T cd03174 218 R--VDGSVNGLGERAGNAATEDLVAALEGLG 246 (265)
T ss_pred E--EEeccccccccccCccHHHHHHHHHhcC
Confidence 7 4886 8889999999998887777655
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.042 Score=49.61 Aligned_cols=141 Identities=19% Similarity=0.245 Sum_probs=98.2
Q ss_pred HHHHHhhcccccEEEecCcccc----ccChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 44 EDIFESMGQFVDGLKFSGGSHS----LMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GTs~----l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
-+.|..+| ||.+=+|++.+. +++ ...+.++.+++.+ +.+. ++.++ . .+.++.+++.|++.
T Consensus 25 ~~~L~~~G--V~~IEvg~~~~~~~~p~~~--~~~~~i~~l~~~~~~~~~~-------~l~~~--~-~~~i~~a~~~g~~~ 90 (265)
T cd03174 25 AEALDEAG--VDSIEVGSGASPKAVPQME--DDWEVLRAIRKLVPNVKLQ-------ALVRN--R-EKGIERALEAGVDE 90 (265)
T ss_pred HHHHHHcC--CCEEEeccCcCccccccCC--CHHHHHHHHHhccCCcEEE-------EEccC--c-hhhHHHHHhCCcCE
Confidence 34455556 999999999986 444 3556666666665 5442 11122 1 67788899999999
Q ss_pred EEecCCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHH
Q 022982 118 IELNVGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (289)
Q Consensus 118 IEISdGti~i------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (289)
|-|+....+. ..+.-.+.|+.+++.|+.+..-+-.-+ . + ..+++
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~-------~----------~-------~~~~~ 146 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAF-------G----------C-------KTDPE 146 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeec-------C----------C-------CCCHH
Confidence 9999876631 345566889999999986443331100 0 0 12588
Q ss_pred HHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhc
Q 022982 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 186 ~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~ 227 (289)
++.+.++...++||+.|. +.|..|...++.+.++++.
T Consensus 147 ~l~~~~~~~~~~g~~~i~-----l~Dt~G~~~P~~v~~li~~ 183 (265)
T cd03174 147 YVLEVAKALEEAGADEIS-----LKDTVGLATPEEVAELVKA 183 (265)
T ss_pred HHHHHHHHHHHcCCCEEE-----echhcCCcCHHHHHHHHHH
Confidence 899999999999999887 7788888888888888753
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.037 Score=50.42 Aligned_cols=159 Identities=15% Similarity=0.221 Sum_probs=90.2
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecCC-CCCCC
Q 022982 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPS 161 (289)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~-~evg~ 161 (289)
|.|+.++-++ -.+++.++.++++||+.||++-.. ...+.++..++-+.+++.|+++-+ +..-... -..+
T Consensus 6 g~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~-~~~~~~~~~~~~- 82 (284)
T PRK13210 6 GIYEKALPKH-LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS-MCLSGHRRFPFG- 82 (284)
T ss_pred chhhhhcCCC-CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE-EecccccCcCCC-
Confidence 4566666542 379999999999999999997322 245667788888899999998653 2210000 0011
Q ss_pred ccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccc-cCCC-CccH------HHHHHHHhccCCCce
Q 022982 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC-KHAD-SLRA------DIIAKVIGRLGLEKT 233 (289)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~-d~~G-~~r~------d~v~~ii~~l~~ekl 233 (289)
..|++. .....+.+.+.++..-+.||..|.+-+-..+ .... .... ..+.++++..|+ +|
T Consensus 83 ~~d~~~------------r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l 149 (284)
T PRK13210 83 SRDPAT------------RERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQV-ML 149 (284)
T ss_pred CCCHHH------------HHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCC-EE
Confidence 111100 0012344455555566889999998532211 1111 1111 223334444554 57
Q ss_pred EEec------CCchhHHHHHHHhC-CCcccccCCCCch
Q 022982 234 MFEA------TNPRTSEWFIRRYG-PKVNLFVDHSQVM 264 (289)
Q Consensus 234 ifEA------P~k~qQ~~~I~~fG-~~VNLgI~~~eVl 264 (289)
.+|. +...+-..+++.++ |+|.+..|+.++.
T Consensus 150 ~lE~~~~~~~~~~~~~~~l~~~v~~~~~~~~~D~~h~~ 187 (284)
T PRK13210 150 AVEIMDTPFMNSISKWKKWDKEIDSPWLTVYPDVGNLS 187 (284)
T ss_pred EEEecCccccCCHHHHHHHHHHcCCCceeEEecCChhh
Confidence 7776 33456778899998 4455446666543
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.031 Score=51.69 Aligned_cols=165 Identities=16% Similarity=0.166 Sum_probs=119.0
Q ss_pred CCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022982 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (289)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (289)
.-++++..++. + ..+|+-.....-+|.+-+..-.+- .+.+++-++.+|++|..+...- |.+....|+.+
T Consensus 75 ~~~~~~~~~~~----~--~~~~i~~a~~~g~~~iri~~~~s~---~~~~~~~i~~ak~~G~~v~~~~--~~~~~~~~~~~ 143 (263)
T cd07943 75 AKLGVLLLPGI----G--TVDDLKMAADLGVDVVRVATHCTE---ADVSEQHIGAARKLGMDVVGFL--MMSHMASPEEL 143 (263)
T ss_pred CEEEEEecCCc----c--CHHHHHHHHHcCCCEEEEEechhh---HHHHHHHHHHHHHCCCeEEEEE--EeccCCCHHHH
Confidence 34555666655 2 346665556667999888765553 3479999999999998776531 22333455678
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
.++.+.+.+.|.+.|-+.|-+-.+.+++-.++++.++++ +.+ -.++..+ .. |
T Consensus 144 ~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~-~~l~~H~-Hn-------------------------~ 195 (263)
T cd07943 144 AEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREA-LDP-TPVGFHG-HN-------------------------N 195 (263)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh-CCC-ceEEEEe-cC-------------------------C
Confidence 888999999999999999999999999999999999884 111 1344432 11 2
Q ss_pred HHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhccC
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
...-+-.+...++|||++ |++. |+=+..||..++.+-..++..+
T Consensus 196 ~GlA~AN~laAi~aGa~~--vd~s~~GlG~~aGN~~~E~lv~~L~~~g 241 (263)
T cd07943 196 LGLAVANSLAAVEAGATR--IDGSLAGLGAGAGNTPLEVLVAVLERMG 241 (263)
T ss_pred cchHHHHHHHHHHhCCCE--EEeecccccCCcCCccHHHHHHHHHhcC
Confidence 334467778889999996 6775 8888899999998777666544
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.011 Score=53.10 Aligned_cols=157 Identities=24% Similarity=0.233 Sum_probs=107.4
Q ss_pred hhHHHHHHH-hhcccccEEEecCccccccC-----------hhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHH
Q 022982 40 HNVLEDIFE-SMGQFVDGLKFSGGSHSLMP-----------KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYV 107 (289)
Q Consensus 40 ~~~~~DlLe-~ag~yID~lKfg~GTs~l~p-----------~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl 107 (289)
....+..++ ....=+|.+-+...+|-++. -+.+++-++.++++|..++.+. |.+-...++.+.++.
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~--~~~~~~~~~~~~~~~ 143 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC--EDASRTDPEELLELA 143 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE--TTTGGSSHHHHHHHH
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc--cccccccHHHHHHHH
Confidence 334444333 23355777777776665322 3468888999999999987653 222234455788899
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHH
Q 022982 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (289)
+.+.++|.+.|-|.|..-.+++++-.++|+.+++.--. .+++... .. |...-
T Consensus 144 ~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~--~~l~~H~-Hn-------------------------d~Gla 195 (237)
T PF00682_consen 144 EALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD--IPLGFHA-HN-------------------------DLGLA 195 (237)
T ss_dssp HHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT--SEEEEEE-BB-------------------------TTS-H
T ss_pred HHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC--CeEEEEe-cC-------------------------Cccch
Confidence 99999999999999999999999999999999996332 3455533 11 12233
Q ss_pred HHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhcc
Q 022982 188 IRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l 228 (289)
+-.+-..++|||++| ++- |+=+..||...+.+-..++..
T Consensus 196 ~An~laA~~aGa~~i--d~t~~GlG~~~Gn~~le~lv~~L~~~ 236 (237)
T PF00682_consen 196 VANALAALEAGADRI--DGTLGGLGERAGNAPLEELVAALERM 236 (237)
T ss_dssp HHHHHHHHHTT-SEE--EEBGGGGSSTTSB-BHHHHHHHHHHT
T ss_pred hHHHHHHHHcCCCEE--EccCccCCCCCCCccHHHHHHHHhhc
Confidence 677888999999994 664 899999999998877666544
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.059 Score=49.89 Aligned_cols=134 Identities=16% Similarity=0.199 Sum_probs=91.5
Q ss_pred chhHHHHHHHhhcccccEEEe------------cCccccccChhHHHHHHHHHHhCCceec----CCcHHHHHHHhCCch
Q 022982 39 SHNVLEDIFESMGQFVDGLKF------------SGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGDWAEHLIRNGPSA 102 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKf------------g~GTs~l~p~~~l~eKI~l~~~~gV~v~----~GtlfE~a~~qg~~~ 102 (289)
.+..+..+.+...+|.|++=+ |.|++.+.+++.+.+.++..++.+++|+ +| + ....
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~-~-------~~~~ 149 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGN-C-------IPLD 149 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCC-C-------Ccch
Confidence 456777777777777777665 6777889999999999999998888766 34 2 1113
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
..++.+.+.+.|.+.|-|..+.-.-+..+ .++|+++++. +..+|=+|. . | ..+
T Consensus 150 ~~~~a~~l~~aGad~i~Vd~~~~g~~~a~-~~~I~~i~~~-~~~ipIIgN---G-------g-----I~s---------- 202 (231)
T TIGR00736 150 ELIDALNLVDDGFDGIHVDAMYPGKPYAD-MDLLKILSEE-FNDKIIIGN---N-------S-----IDD---------- 202 (231)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCCCCchhh-HHHHHHHHHh-cCCCcEEEE---C-------C-----cCC----------
Confidence 45778889999999999975443222233 4889999884 212444444 1 1 111
Q ss_pred cHHHHHHHHHHHHHccCcEEEEeccccccCC
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHA 213 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~ 213 (289)
.+.+.+.|++||+.||| +|++..++
T Consensus 203 -----~eda~e~l~~GAd~Vmv-gR~~l~~~ 227 (231)
T TIGR00736 203 -----IESAKEMLKAGADFVSV-ARAILKGN 227 (231)
T ss_pred -----HHHHHHHHHhCCCeEEE-cHhhccCC
Confidence 46666777789999998 56666543
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.017 Score=55.86 Aligned_cols=124 Identities=20% Similarity=0.270 Sum_probs=90.5
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL---- 125 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti---- 125 (289)
..|+-+-||+||..++|.+.|++.++.++++ ++.. . .|..+.-+|+.+ ++.++.++++||+.|.|.--|.
T Consensus 58 ~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~--~--~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~ 133 (375)
T PRK05628 58 PPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAP--G--AEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHV 133 (375)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCC--C--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHH
Confidence 4589999999999999999999999999874 4422 1 133333344444 5799999999999999987666
Q ss_pred ------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc
Q 022982 126 ------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (289)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG 198 (289)
..+.++-.+.++.+++.||. |...+-. +. |. +|.+++.+.++..++.|
T Consensus 134 L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~--Gl----------------Pg-------qt~~~~~~tl~~~~~l~ 188 (375)
T PRK05628 134 LAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIY--GT----------------PG-------ESDDDWRASLDAALEAG 188 (375)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEec--cC----------------CC-------CCHHHHHHHHHHHHhcC
Confidence 34566777899999999987 4333222 11 11 14788899999999999
Q ss_pred CcEEEE
Q 022982 199 ADMIMI 204 (289)
Q Consensus 199 A~~Vii 204 (289)
.+.|-+
T Consensus 189 ~~~i~~ 194 (375)
T PRK05628 189 VDHVSA 194 (375)
T ss_pred CCEEEe
Confidence 998843
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=54.36 Aligned_cols=164 Identities=14% Similarity=0.168 Sum_probs=119.7
Q ss_pred CCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022982 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (289)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (289)
.=+..+.+++- ...+|+......-||.+.+++..+.+ +.+++-++.++++|..|+.+ +|.+....++.+
T Consensus 72 ~~~~~~~~~~~------~~~~~l~~a~~~gv~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~~~~ 140 (266)
T cd07944 72 TKIAVMVDYGN------DDIDLLEPASGSVVDMIRVAFHKHEF---DEALPLIKAIKEKGYEVFFN--LMAISGYSDEEL 140 (266)
T ss_pred CEEEEEECCCC------CCHHHHHHHhcCCcCEEEEecccccH---HHHHHHHHHHHHCCCeEEEE--EEeecCCCHHHH
Confidence 34455555542 14667777777889999999877644 56999999999999988754 111223456688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
.++++.+.+.|.+.|-+.|-+-.+.+++-.++++.++++ +..-..++... =.|
T Consensus 141 ~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~~i~~H~--------------------------Hn~ 193 (266)
T cd07944 141 LELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSN-LDKDIKLGFHA--------------------------HNN 193 (266)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh-cCCCceEEEEe--------------------------CCC
Confidence 899999999999999999999999999999999999873 11001233321 113
Q ss_pred HHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhc
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~ 227 (289)
...-+..+...++|||+. |++- |+=+..||..++.+-..++.
T Consensus 194 ~Gla~AN~laA~~aGa~~--vd~s~~G~G~~aGN~~~E~~v~~l~~ 237 (266)
T cd07944 194 LQLALANTLEAIELGVEI--IDATVYGMGRGAGNLPTELLLDYLNN 237 (266)
T ss_pred ccHHHHHHHHHHHcCCCE--EEEecccCCCCcCcHHHHHHHHHHHH
Confidence 444577788889999975 6665 88889999999887666643
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.046 Score=50.20 Aligned_cols=156 Identities=17% Similarity=0.279 Sum_probs=90.7
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCcc
Q 022982 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDR 163 (289)
Q Consensus 92 fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~evg~~~ 163 (289)
|+.++.++ -.+.+-++.++++||++||++-+. .+.+.+++..+-+.+++.|+++.+ +..-.. ....+ ..
T Consensus 8 ~~~~~~~~-~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~-~~ 84 (279)
T TIGR00542 8 YEKALPKG-ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPS-MCLSAHRRFPLG-SK 84 (279)
T ss_pred ehhhCCCC-CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCcee-eecCCCccCcCC-Cc
Confidence 34555532 368888999999999999997443 356788888899999999998753 111000 00001 11
Q ss_pred ccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccc-cCC-CCccHH------HHHHHHhccCCCceEE
Q 022982 164 DRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC-KHA-DSLRAD------IIAKVIGRLGLEKTMF 235 (289)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~-d~~-G~~r~d------~v~~ii~~l~~eklif 235 (289)
|++ .+ ....+.+-+.++..-+.||..|.+-+.... +.. .+.... .+.++++..|+ +|.+
T Consensus 85 ~~~--------~r----~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv-~l~l 151 (279)
T TIGR00542 85 DKA--------VR----QQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQV-TLAV 151 (279)
T ss_pred CHH--------HH----HHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCC-EEEE
Confidence 110 00 112445566666677889999998775432 111 111111 23334455555 5788
Q ss_pred ec---C---CchhHHHHHHHhC-CCcccccCCCCc
Q 022982 236 EA---T---NPRTSEWFIRRYG-PKVNLFVDHSQV 263 (289)
Q Consensus 236 EA---P---~k~qQ~~~I~~fG-~~VNLgI~~~eV 263 (289)
|. | ...+-..+++..| |+|.+..|+.++
T Consensus 152 E~~~~~~~~t~~~~~~li~~v~~~~v~~~~D~~h~ 186 (279)
T TIGR00542 152 EIMDTPFMSSISKWLKWDHYLNSPWFTLYPDIGNL 186 (279)
T ss_pred eeCCCchhcCHHHHHHHHHHcCCCceEEEeCcChh
Confidence 85 1 3345567889888 555554566554
|
This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.052 Score=50.83 Aligned_cols=151 Identities=19% Similarity=0.271 Sum_probs=98.2
Q ss_pred HHHHHHhhcccccEEEecCccc--------cccChhHHHHHHHHHHhCCceecC-Cc-HHHHHHHhCCc-hHHHHHHHHH
Q 022982 43 LEDIFESMGQFVDGLKFSGGSH--------SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPS-AFKEYVEDCK 111 (289)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GTs--------~l~p~~~l~eKI~l~~~~gV~v~~-Gt-lfE~a~~qg~~-~~~~yl~~~k 111 (289)
.-..|..+| ||.+=+|+|++ .-.|.+.+++..+...+..+.... |. +.- +..-|. -.++.++.+.
T Consensus 26 ia~~L~~~G--v~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~--~~~~p~~~~~~di~~~~ 101 (275)
T cd07937 26 IAEALDEAG--FFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVG--YRHYPDDVVELFVEKAA 101 (275)
T ss_pred HHHHHHHcC--CCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccC--ccCCCcHHHHHHHHHHH
Confidence 345677778 99999999884 334444444444333222221110 10 000 111122 3788999999
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHH
Q 022982 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (289)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~ 191 (289)
+.|.+.|-|+...-++ +.-...|+.+++.|++|.. .+....+ + .+ |++.+.+.+
T Consensus 102 ~~g~~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~~--~i~~~~~-------~---------~~------~~~~~~~~~ 155 (275)
T cd07937 102 KNGIDIFRIFDALNDV--RNLEVAIKAVKKAGKHVEG--AICYTGS-------P---------VH------TLEYYVKLA 155 (275)
T ss_pred HcCCCEEEEeecCChH--HHHHHHHHHHHHCCCeEEE--EEEecCC-------C---------CC------CHHHHHHHH
Confidence 9999999998766654 4556799999999987653 4421110 0 01 588889999
Q ss_pred HHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 192 ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 192 ~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+.-.++||+.|- |.|..|...++.+.++++.+
T Consensus 156 ~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (275)
T cd07937 156 KELEDMGADSIC-----IKDMAGLLTPYAAYELVKAL 187 (275)
T ss_pred HHHHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 999999999874 68999999999888888654
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.031 Score=53.89 Aligned_cols=126 Identities=14% Similarity=0.238 Sum_probs=90.6
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (289)
.-|+.+=||+||..+.+++.|.+.++..+++- .+..+ .|+.+.-+|+.+ ++.++.++++|++.|.|+--+.+
T Consensus 50 ~~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l 126 (360)
T TIGR00539 50 EPLESIFIGGGTPNTLSVEAFERLFESIYQHA-SLSDD--CEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKL 126 (360)
T ss_pred CcccEEEeCCCchhcCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHH
Confidence 34889999999999999999999999987641 11122 344444455554 58899999999999999877663
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 127 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
-+.++-.+.|+.+++.||. +-..+ ..+. |. +|.+++.+.++..++.|+
T Consensus 127 ~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dl--i~Gl----------------Pg-------qt~~~~~~~l~~~~~l~~ 181 (360)
T TIGR00539 127 LFLGRQHSAKNIAPAIETALKSGIENISLDL--MYGL----------------PL-------QTLNSLKEELKLAKELPI 181 (360)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEEEec--cCCC----------------CC-------CCHHHHHHHHHHHHccCC
Confidence 4667778899999999986 22211 1111 11 147788888998999999
Q ss_pred cEEEEe
Q 022982 200 DMIMID 205 (289)
Q Consensus 200 ~~ViiE 205 (289)
+.|-+=
T Consensus 182 ~~is~y 187 (360)
T TIGR00539 182 NHLSAY 187 (360)
T ss_pred CEEEee
Confidence 988553
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.033 Score=54.30 Aligned_cols=125 Identities=14% Similarity=0.237 Sum_probs=91.4
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~---- 126 (289)
.-|+-+=||+||..+.+++.|.+.++.++++= .+.++ .|+.+.-+|+. -++.++.++++||+.|.|+--+.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L 133 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARL-PFAPD--AEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKL 133 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhC-CCCCC--cEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHH
Confidence 45899999999999999999999999998751 11112 24444444444 358889999999999999877663
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 127 ------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
-+.++-.+.|+.+++.||+..+ +....+. |. ++.+.+.+.++..++.|.+
T Consensus 134 ~~l~r~~~~~~~~~ai~~~~~~G~~~v~-~dli~Gl----------------pg-------qt~~~~~~~l~~~~~l~p~ 189 (378)
T PRK05660 134 KRLGRIHGPDEAKRAAKLAQGLGLRSFN-LDLMHGL----------------PD-------QSLEEALDDLRQAIALNPP 189 (378)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHhcCCC
Confidence 3566777889999999997422 2222221 11 1488889999999999999
Q ss_pred EEE
Q 022982 201 MIM 203 (289)
Q Consensus 201 ~Vi 203 (289)
+|-
T Consensus 190 ~is 192 (378)
T PRK05660 190 HLS 192 (378)
T ss_pred eEE
Confidence 884
|
|
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.062 Score=52.15 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=93.2
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (289)
..++-+=||+||..+.|.+.|++.++.++++ + .++ .|+.+.-+|+.+ ++.++.+++.|++.|.|.--+.
T Consensus 55 ~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~-~--~~~--~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL 129 (353)
T PRK05904 55 KQFKTIYLGGGTPNCLNDQLLDILLSTIKPY-V--DNN--CEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNIL 129 (353)
T ss_pred CCeEEEEECCCccccCCHHHHHHHHHHHHHh-c--CCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 5688999999999999999999999999997 2 223 355555566654 6999999999999998876665
Q ss_pred -----cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 126 -----EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
.-+.++-.+.|+.+++.||. +-..+ -.+. |. ++.+++.+.++...+.+.
T Consensus 130 ~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dl--I~Gl----------------Pg-------qt~e~~~~tl~~~~~l~p 184 (353)
T PRK05904 130 KQLNRTHTIQDSKEAINLLHKNGIYNISCDF--LYCL----------------PI-------LKLKDLDEVFNFILKHKI 184 (353)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEE--eecC----------------CC-------CCHHHHHHHHHHHHhcCC
Confidence 34566777899999999986 22222 1111 11 147778888888889999
Q ss_pred cEEEEec
Q 022982 200 DMIMIDS 206 (289)
Q Consensus 200 ~~ViiEa 206 (289)
++|-+-.
T Consensus 185 ~~is~y~ 191 (353)
T PRK05904 185 NHISFYS 191 (353)
T ss_pred CEEEEEe
Confidence 9886655
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.27 Score=43.20 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=91.5
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC-CceecCCc-HHHHHHHhCCchHHHH-HHHHHHcCC
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD-WAEHLIRNGPSAFKEY-VEDCKQVGF 115 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~Gt-lfE~a~~qg~~~~~~y-l~~~k~lGF 115 (289)
.+.....+.+..++.||++|+|+ +...+. -++..-++.+.| +..+.-++ ++ +|+ .| ++.+.+.|.
T Consensus 10 ~~~~a~~~~~~l~~~v~~iev~~--~l~~~~-g~~~i~~l~~~~~~~~i~~d~k~~------d~~---~~~~~~~~~~Ga 77 (206)
T TIGR03128 10 DIEEALELAEKVADYVDIIEIGT--PLIKNE-GIEAVKEMKEAFPDRKVLADLKTM------DAG---EYEAEQAFAAGA 77 (206)
T ss_pred CHHHHHHHHHHcccCeeEEEeCC--HHHHHh-CHHHHHHHHHHCCCCEEEEEEeec------cch---HHHHHHHHHcCC
Confidence 45677778888899999999963 333332 232222333333 33333232 22 322 34 677889999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHH
Q 022982 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194 (289)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~d 194 (289)
|+|=+.--+ +...-.++++.++++|+++.+++ +. ....+.++..
T Consensus 78 d~i~vh~~~---~~~~~~~~i~~~~~~g~~~~~~~~~~--------------------------------~t~~~~~~~~ 122 (206)
T TIGR03128 78 DIVTVLGVA---DDATIKGAVKAAKKHGKEVQVDLINV--------------------------------KDKVKRAKEL 122 (206)
T ss_pred CEEEEeccC---CHHHHHHHHHHHHHcCCEEEEEecCC--------------------------------CChHHHHHHH
Confidence 999655322 34455789999999998866643 22 0114555666
Q ss_pred HHccCcEEEEeccccc-cCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCC
Q 022982 195 LEAGADMIMIDSDDVC-KHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPK 253 (289)
Q Consensus 195 LeAGA~~ViiEarGI~-d~~G~~r~d~v~~ii~~l~~eklifEAP~k~qQ~~~I~~fG~~ 253 (289)
.+.|+++|.+.. |.- ..-+....+.+.++.+.++.-.++..-=-..+-..-+...|.+
T Consensus 123 ~~~g~d~v~~~p-g~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~ 181 (206)
T TIGR03128 123 KELGADYIGVHT-GLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPD 181 (206)
T ss_pred HHcCCCEEEEcC-CcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCC
Confidence 788999998863 111 1122334555666665555323332322222223233355555
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.06 Score=53.64 Aligned_cols=127 Identities=17% Similarity=0.354 Sum_probs=89.8
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (289)
-|+-+-||+||..+++++.+.+.++.++++ .....+ .|+.+.-+|+. -++.++.+++.||+.|.|+--+.+
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~-~~~~~~--~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~ 178 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIREN-FPFNAD--AEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQ 178 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHh-CCCCCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHH
Confidence 477889999999999999999999999986 111112 23333233333 368999999999999999866653
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcE
Q 022982 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (289)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ 201 (289)
-+.++-.+.|+.+++.|++.. -+....+. |. +|.+.+.+.++..++.|++.
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~Gl----------------Pg-------qt~e~~~~tl~~~~~l~~~~ 234 (455)
T TIGR00538 179 AVNRIQPEEMIFELMNHAREAGFTSI-NIDLIYGL----------------PK-------QTKESFAKTLEKVAELNPDR 234 (455)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCCcE-EEeEEeeC----------------CC-------CCHHHHHHHHHHHHhcCCCE
Confidence 455666789999999998621 12222221 11 14788889999999999999
Q ss_pred EEEec
Q 022982 202 IMIDS 206 (289)
Q Consensus 202 ViiEa 206 (289)
|-+-.
T Consensus 235 is~y~ 239 (455)
T TIGR00538 235 LAVFN 239 (455)
T ss_pred EEEec
Confidence 86653
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.083 Score=51.73 Aligned_cols=149 Identities=18% Similarity=0.209 Sum_probs=110.7
Q ss_pred HHHHHHHhhcccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHH
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~ 110 (289)
.++..+++ -+|.+-+...+|-++-+ +.+++-++.++++|..|+.+ +|.+-..+++.+.++++.+
T Consensus 80 di~~a~~~---g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~--~ed~~r~~~~~l~~~~~~~ 154 (378)
T PRK11858 80 DIDASIDC---GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS--AEDASRTDLDFLIEFAKAA 154 (378)
T ss_pred HHHHHHhC---CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eccCCCCCHHHHHHHHHHH
Confidence 34444443 47888888887776433 45778899999999988765 4555556667889999999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHH
Q 022982 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (289)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 190 (289)
.+.|.+.|-+.|-.-.+.+++-.++|+.+++.= .+ .+++.+ .. |...-+-.
T Consensus 155 ~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~--~l~~H~-Hn-------------------------d~GlA~AN 205 (378)
T PRK11858 155 EEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DI--PIEVHC-HN-------------------------DFGMATAN 205 (378)
T ss_pred HhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CC--eEEEEe-cC-------------------------CcCHHHHH
Confidence 999999999999999999999999999998752 22 344432 11 22333666
Q ss_pred HHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 022982 191 AERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 191 ~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~ 226 (289)
+...++|||++| ++- |+=+..||...+.+-..+.
T Consensus 206 ~laAv~aGa~~v--d~tv~GlGeraGNa~lE~vv~~L~ 241 (378)
T PRK11858 206 ALAGIEAGAKQV--HTTVNGLGERAGNAALEEVVMALK 241 (378)
T ss_pred HHHHHHcCCCEE--EEeeccccccccCccHHHHHHHHH
Confidence 777899999975 664 8889999999887766554
|
|
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.093 Score=52.37 Aligned_cols=126 Identities=20% Similarity=0.392 Sum_probs=91.1
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (289)
-|+-+=||+||..+.|++.|++.++.++++ ++ .++ .|+.+.-+|+.+ ++.++.++++||+.|.|+--+.+
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~--~~~--~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl 178 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDF--APE--AEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQ 178 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCC--CCC--ceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 367788999999999999999999999886 22 111 233333334333 78999999999999999876663
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 127 ------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
-+.++-.+.|+.+++.||.... +....+. |. +|.+.+.+.++..++.|.+
T Consensus 179 ~~l~R~~~~~~~~~ai~~lr~~G~~~v~-~dli~Gl----------------Pg-------qt~e~~~~tl~~~~~l~p~ 234 (453)
T PRK13347 179 KAINRIQPEEMVARAVELLRAAGFESIN-FDLIYGL----------------PH-------QTVESFRETLDKVIALSPD 234 (453)
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCCcEE-EeEEEeC----------------CC-------CCHHHHHHHHHHHHhcCCC
Confidence 5677778999999999986211 1111111 11 1488889999999999999
Q ss_pred EEEEec
Q 022982 201 MIMIDS 206 (289)
Q Consensus 201 ~ViiEa 206 (289)
.|-+-+
T Consensus 235 ~i~~y~ 240 (453)
T PRK13347 235 RIAVFG 240 (453)
T ss_pred EEEEec
Confidence 997754
|
|
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.04 Score=54.18 Aligned_cols=125 Identities=17% Similarity=0.292 Sum_probs=90.9
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (289)
.-|+-+=||+||..++|.+.|++.++..+++ ..+.+. .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 65 ~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~-~~~~~~--~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L 141 (400)
T PRK07379 65 QPLQTVFFGGGTPSLLSVEQLERILTTLDQR-FGIAPD--AEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELL 141 (400)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHh-CCCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHH
Confidence 4589999999999999999999999999876 222222 244443445444 5899999999999998876665
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
..+.++-.+.++.+++.||.... +....+. |. +|.+.+.+.++..++.+.+
T Consensus 142 ~~l~R~~~~~~~~~ai~~l~~~G~~~v~-~dlI~Gl----------------Pg-------qt~e~~~~tl~~~~~l~p~ 197 (400)
T PRK07379 142 ALCGRSHRVKDIFAAVDLIHQAGIENFS-LDLISGL----------------PH-------QTLEDWQASLEAAIALNPT 197 (400)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHcCCCC
Confidence 45677778899999999987211 1222221 11 1478888999999999999
Q ss_pred EEE
Q 022982 201 MIM 203 (289)
Q Consensus 201 ~Vi 203 (289)
.|-
T Consensus 198 ~is 200 (400)
T PRK07379 198 HLS 200 (400)
T ss_pred EEE
Confidence 884
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.09 Score=51.15 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=109.1
Q ss_pred hcccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022982 50 MGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
...-+|.+-+...+|-++-+ +.+++-|+.++++|..|+.+ +|.+-...++.+.++.+.+.+.|.+.|
T Consensus 82 ~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~i 159 (365)
T TIGR02660 82 ARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG--GEDASRADPDFLVELAEVAAEAGADRF 159 (365)
T ss_pred HcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe--ecCCCCCCHHHHHHHHHHHHHcCcCEE
Confidence 33457888888887754332 23558899999999988765 555555566788899999999999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc
Q 022982 119 ELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (289)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG 198 (289)
-+.|-.--+.+++-.++|+.+++. +.+ .+++.+ .. |...-+-.+...++||
T Consensus 160 ~l~DT~G~~~P~~v~~lv~~l~~~-~~v--~l~~H~-HN-------------------------d~GlA~ANalaA~~aG 210 (365)
T TIGR02660 160 RFADTVGILDPFSTYELVRALRQA-VDL--PLEMHA-HN-------------------------DLGMATANTLAAVRAG 210 (365)
T ss_pred EEcccCCCCCHHHHHHHHHHHHHh-cCC--eEEEEe-cC-------------------------CCChHHHHHHHHHHhC
Confidence 999999999999999999999874 122 244432 11 1223367777889999
Q ss_pred CcEEEEecc--ccccCCCCccHHHHHHHH-hccCC
Q 022982 199 ADMIMIDSD--DVCKHADSLRADIIAKVI-GRLGL 230 (289)
Q Consensus 199 A~~ViiEar--GI~d~~G~~r~d~v~~ii-~~l~~ 230 (289)
|++| ++- |+=+..||.-.+.+-..+ ...|.
T Consensus 211 a~~v--d~tl~GiGeraGN~~lE~lv~~L~~~~g~ 243 (365)
T TIGR02660 211 ATHV--NTTVNGLGERAGNAALEEVAMALKRLLGR 243 (365)
T ss_pred CCEE--EEEeeccccccccCCHHHHHHHHHHhcCC
Confidence 9964 765 888999999888776666 44443
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.055 Score=53.91 Aligned_cols=127 Identities=18% Similarity=0.325 Sum_probs=90.7
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (289)
-|+-+=||+||..++|.+.|.+.++.++++- .+.++ .|+.+.-+|+. -++.++.+++.|++.|.|+--+.+
T Consensus 102 ~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~ 178 (453)
T PRK09249 102 PVSQLHWGGGTPTFLSPEQLRRLMALLREHF-NFAPD--AEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQK 178 (453)
T ss_pred ceEEEEECCcccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHH
Confidence 4889999999999999999999999998861 11222 12222233333 368999999999999999876663
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcE
Q 022982 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (289)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ 201 (289)
-+.++-.+.|+.+++.||+.. -+....+. |. ++.+++.+.++..++.|++.
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~Gl----------------Pg-------qt~e~~~~~l~~~~~l~~~~ 234 (453)
T PRK09249 179 AVNRIQPFEFTFALVEAARELGFTSI-NIDLIYGL----------------PK-------QTPESFARTLEKVLELRPDR 234 (453)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCcE-EEEEEccC----------------CC-------CCHHHHHHHHHHHHhcCCCE
Confidence 566777899999999998421 12222221 11 14778888999999999998
Q ss_pred EEEec
Q 022982 202 IMIDS 206 (289)
Q Consensus 202 ViiEa 206 (289)
|-+-.
T Consensus 235 i~~y~ 239 (453)
T PRK09249 235 LAVFN 239 (453)
T ss_pred EEEcc
Confidence 87654
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.16 Score=47.08 Aligned_cols=158 Identities=17% Similarity=0.154 Sum_probs=109.6
Q ss_pred HHHHHHHhhc-ccccEEEecCcccccc-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHH
Q 022982 42 VLEDIFESMG-QFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (289)
Q Consensus 42 ~~~DlLe~ag-~yID~lKfg~GTs~l~-----------p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~ 109 (289)
.++..++.-. ..+|.+.+...+|-+. .-+.+++-++.++++|..++.+. |.+-...++.+.++.+.
T Consensus 74 ~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~ 151 (268)
T cd07940 74 DIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA--EDATRTDLDFLIEVVEA 151 (268)
T ss_pred hHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee--ecCCCCCHHHHHHHHHH
Confidence 4444444322 2289998877665442 11457788999999999888542 22223345577888899
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
+.++|.+.|-+.|-+-.+.+++-.++++.+++.==..-..++..+ . .|...-+.
T Consensus 152 ~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~-H-------------------------n~~GlA~A 205 (268)
T cd07940 152 AIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHC-H-------------------------NDLGLAVA 205 (268)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEe-c-------------------------CCcchHHH
Confidence 999999999999999999999999999999984100001233322 1 12334467
Q ss_pred HHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhccC
Q 022982 190 RAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
.+...+++||++| ++. |+=+..||..++.+-..++..+
T Consensus 206 n~laAi~aG~~~i--D~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 206 NSLAAVEAGARQV--ECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred HHHHHHHhCCCEE--EEEeeccccccccccHHHHHHHHHhcc
Confidence 7778899999964 775 8889999999998877775543
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.17 Score=47.97 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=99.0
Q ss_pred EEecCccccccChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCC-CEEEecCCcc--------
Q 022982 57 LKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSL-------- 125 (289)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti-------- 125 (289)
+=||.||....|.+.|++.++.++++. +.++-+|=-+.+ +...-+.++.+++.|+ ..||+.-=|.
T Consensus 81 iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l----~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 81 AYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCV----PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred EEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcC----CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 668999999999999999999998753 122222211111 1133456666667799 4688853333
Q ss_pred --cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEE
Q 022982 126 --EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 203 (289)
Q Consensus 126 --~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vi 203 (289)
..+.++..+.++.++++|++|...+=+ +. |. ++.+++++.++...+.+.+.|-
T Consensus 157 ~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~--Gl----------------Pg-------et~e~~~~t~~~l~~l~~d~i~ 211 (302)
T TIGR01212 157 NRGHDFACYVDAVKRARKRGIKVCSHVIL--GL----------------PG-------EDREEMMETAKIVSLLDVDGIK 211 (302)
T ss_pred cCcChHHHHHHHHHHHHHcCCEEEEeEEE--CC----------------CC-------CCHHHHHHHHHHHHhcCCCEEE
Confidence 235678889999999999987665433 21 11 1478888999999999999776
Q ss_pred E------ecccccc--CCCCcc-------HHHHHHHHhccCCCceEEe
Q 022982 204 I------DSDDVCK--HADSLR-------ADIIAKVIGRLGLEKTMFE 236 (289)
Q Consensus 204 i------EarGI~d--~~G~~r-------~d~v~~ii~~l~~eklifE 236 (289)
+ ++-.+++ ..|.+. .+++..+++.++++.+|+-
T Consensus 212 i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i~R 259 (302)
T TIGR01212 212 IHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIHR 259 (302)
T ss_pred EEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEEEE
Confidence 5 2222322 234443 3455667788888888776
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.15 Score=48.34 Aligned_cols=150 Identities=16% Similarity=0.120 Sum_probs=104.1
Q ss_pred cccccEEEecCccccccChh-----------HHHHHHHHHHhCCceec------CCcHHHHHHHhCCchHHHHHHHHHHc
Q 022982 51 GQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQV 113 (289)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~~~~yl~~~k~l 113 (289)
..-+|.+-+...+|-.+.+. .+++-|+.++++|..+. .|..++. .-.++.+.++.+.+.++
T Consensus 90 ~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 90 AAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEG--EVPPEAVADVAERLFAL 167 (287)
T ss_pred HcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCC--CCCHHHHHHHHHHHHHc
Confidence 33577777777776553332 37789999999999874 2333333 23455788899999999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHH
Q 022982 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 193 (289)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~ 193 (289)
|.+.|-+.|-.--+.+.+-.++++.+++. +.. ..+++.+ ..+ ...-+..+-.
T Consensus 168 G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~-~~i~~H~-Hn~-------------------------~Gla~AN~la 219 (287)
T PRK05692 168 GCYEISLGDTIGVGTPGQVRAVLEAVLAE-FPA-ERLAGHF-HDT-------------------------YGQALANIYA 219 (287)
T ss_pred CCcEEEeccccCccCHHHHHHHHHHHHHh-CCC-CeEEEEe-cCC-------------------------CCcHHHHHHH
Confidence 99999999999999999999999999984 211 1345533 111 2223667778
Q ss_pred HHHccCcEEEEecccccc------CCCCccHHHHHHHHhccCC
Q 022982 194 CLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 194 dLeAGA~~ViiEarGI~d------~~G~~r~d~v~~ii~~l~~ 230 (289)
.++|||++|=.=--||=. ..||.-++.+-..++..|.
T Consensus 220 A~~aG~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g~ 262 (287)
T PRK05692 220 SLEEGITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGI 262 (287)
T ss_pred HHHhCCCEEEEEccccCCCCCCCCccccccHHHHHHHHHhcCC
Confidence 899999974332237765 6899888877666655443
|
|
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.14 Score=50.09 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=107.0
Q ss_pred hhHHHHHHHhhcccccEEEecCcccccc--------ChhHH---HHHHHHHHhCCceec------CCcHHHHHHHhCCch
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHSLM--------PKPFI---EEVVKRAHQHDVYVS------TGDWAEHLIRNGPSA 102 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~l~--------p~~~l---~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~ 102 (289)
.+.++..+++- +|.+-+...+|-.+ +++.+ ++-|++++++|..+. .|..++. .-+++.
T Consensus 124 ~~die~A~~~g---~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~--r~~~~~ 198 (347)
T PLN02746 124 LKGFEAAIAAG---AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEG--PVPPSK 198 (347)
T ss_pred HHHHHHHHHcC---cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccC--CCCHHH
Confidence 34555556553 45666665554322 33333 489999999999773 2433332 235568
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.++.+.+.+.|.+.|-|.|-.--+.+.+-.++++.+++. +. ..+++..+. .
T Consensus 199 l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~-~~-~~~i~~H~H-n------------------------- 250 (347)
T PLN02746 199 VAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV-VP-VDKLAVHFH-D------------------------- 250 (347)
T ss_pred HHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh-CC-CCeEEEEEC-C-------------------------
Confidence 8899999999999999999999999999999999999874 32 123566431 1
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecccccc------CCCCccHHHHHHHHhccC
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLG 229 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d------~~G~~r~d~v~~ii~~l~ 229 (289)
|...-+-.+-..++|||++|=.=--||=. ..||.-++.+-..++.+|
T Consensus 251 d~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G 303 (347)
T PLN02746 251 TYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLG 303 (347)
T ss_pred CCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcC
Confidence 12334677788999999975333347765 789988877766665444
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.33 Score=44.81 Aligned_cols=147 Identities=17% Similarity=0.154 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
+.+.++++++.+.|.+.|=+...+ ..|+.++|.++++.+.+.- ...+.+-.+ |+
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~---~~~~~vi~g---v~----------------- 74 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV---AGRVPVIAG---VG----------------- 74 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh---CCCCeEEEe---cC-----------------
Confidence 478899999999999999665443 4899999999999998841 111111110 11
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccCC----CCccHHHHHHHHhcc
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVIGRL 228 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~~----G~~r~d~v~~ii~~l 228 (289)
..+..+.+++++..-++||+.|++=.- -||+.- -.+..+++.++++ .
T Consensus 75 ---~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~-~ 150 (281)
T cd00408 75 ---ANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE-H 150 (281)
T ss_pred ---CccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc-C
Confidence 113678899999999999999999763 145443 2455777777764 3
Q ss_pred C-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 229 G-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 229 ~-~eklifEAP~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
+ +-=+=...++..+...+++..++++.+..-. |-.-++.|..|--|
T Consensus 151 ~~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~-d~~~~~~l~~G~~G 197 (281)
T cd00408 151 PNIVGIKDSSGDLDRLTRLIALLGPDFAVLSGD-DDLLLPALALGADG 197 (281)
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEcc-hHHHHHHHHcCCCE
Confidence 2 2222234566777777888887777775444 55666777766544
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.27 Score=45.90 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.++++++++.+.|.+.|=+. |+. .|+.++|.++++.+.+. +...+-+-. .|+
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~---~~~~~~vi~---gv~---------------- 78 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVVV-GTTGESPTLTHEEHEELIRAVVEA---VNGRVPVIA---GTG---------------- 78 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CcCCccccCCHHHHHHHHHHHHHH---hCCCCcEEe---ecC----------------
Confidence 368889999999999999884 665 89999999999999884 111111110 011
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~---~G-~~r~d~v~~ii~~ 227 (289)
..+.++.+++++..-++||+.|++=.- -||+. .| .+..+++.++. +
T Consensus 79 ----~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~-~ 153 (292)
T PRK03170 79 ----SNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLA-E 153 (292)
T ss_pred ----CchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHH-c
Confidence 114788899999999999999999552 14442 12 34566666663 3
Q ss_pred cCCCceEE--e-cCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 228 LGLEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 228 l~~eklif--E-AP~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
.| +++. + .++..+-..++++++++..++...++. -+.+++.|.-|
T Consensus 154 ~p--~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~-~~~~l~~G~~G 201 (292)
T PRK03170 154 HP--NIVGIKEATGDLERVSELIELVPDDFAVYSGDDAL-ALPFLALGGVG 201 (292)
T ss_pred CC--CEEEEEECCCCHHHHHHHHHhCCCCeEEEECChHh-HHHHHHcCCCE
Confidence 32 2221 2 334455555666666665555444443 35667766544
|
|
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.2 Score=46.76 Aligned_cols=145 Identities=14% Similarity=0.125 Sum_probs=102.2
Q ss_pred cccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCC-c-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 51 GQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTG-D-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 51 g~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~G-t-lfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
..-+|.+.+...+|-.+.+ +.+++-++++|++|..|+.+ . +++. ....++.+.++++.+.+.|.+.
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~-~~~~~~~~~~~~~~~~~~g~~~ 167 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDG-YKANPEYALATLKAAAEAGADW 167 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecccc-CCCCHHHHHHHHHHHHhCCCCE
Confidence 3356777777666544322 24688999999999988775 2 3231 1223456778888889999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHc
Q 022982 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (289)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeA 197 (289)
|-|.|-.-.+.+++-.++++.++++ +. -..++..+ .. |...-...+...++|
T Consensus 168 i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~l~~H~-Hn-------------------------d~Gla~An~laA~~a 219 (273)
T cd07941 168 LVLCDTNGGTLPHEIAEIVKEVRER-LP-GVPLGIHA-HN-------------------------DSGLAVANSLAAVEA 219 (273)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHh-CC-CCeeEEEe-cC-------------------------CCCcHHHHHHHHHHc
Confidence 9999999999999999999999984 11 01244432 11 122336777788999
Q ss_pred cCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 022982 198 GADMIMIDSD--DVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 198 GA~~ViiEar--GI~d~~G~~r~d~v~~ii~ 226 (289)
||++ +++. |+=+..||...+.+-..+.
T Consensus 220 Ga~~--id~s~~GlGeraGn~~~e~~~~~L~ 248 (273)
T cd07941 220 GATQ--VQGTINGYGERCGNANLCSIIPNLQ 248 (273)
T ss_pred CCCE--EEEeccccccccccccHHHHHHHHH
Confidence 9996 6665 8999999998877665554
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.13 Score=51.05 Aligned_cols=127 Identities=11% Similarity=0.226 Sum_probs=89.3
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc------
Q 022982 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE------ 126 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~------ 126 (289)
+.-+=||+||-.+++.+.|++.++.++++- .+.++. .|+.+.-+|+.+ ++.++.++++||+.|.|.--|.+
T Consensus 92 i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~-~~~~~~-~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~ 169 (430)
T PRK08208 92 FASFAVGGGTPTLLNAAELEKLFDSVERVL-GVDLGN-IPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHA 169 (430)
T ss_pred eeEEEEcCCccccCCHHHHHHHHHHHHHhC-CCCCCC-ceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 667789999999999999999999998652 122211 133333344444 78999999999999999877762
Q ss_pred ----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEE
Q 022982 127 ----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (289)
Q Consensus 127 ----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~V 202 (289)
-+.++-.+.|+.+++.||.+.. +....+. |. +|.+.+.+.++..++.|.+.|
T Consensus 170 l~R~~~~~~~~~ai~~l~~~g~~~i~-~dlI~Gl----------------P~-------qt~e~~~~~l~~~~~l~~~~i 225 (430)
T PRK08208 170 LHRPQKRADVHQALEWIRAAGFPILN-IDLIYGI----------------PG-------QTHASWMESLDQALVYRPEEL 225 (430)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHhCCCCEE
Confidence 3556777899999999987421 2222221 11 147788888888899999987
Q ss_pred EEec
Q 022982 203 MIDS 206 (289)
Q Consensus 203 iiEa 206 (289)
-+=.
T Consensus 226 s~y~ 229 (430)
T PRK08208 226 FLYP 229 (430)
T ss_pred EEcc
Confidence 6554
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.24 Score=45.94 Aligned_cols=144 Identities=15% Similarity=0.189 Sum_probs=92.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.+.++++++.+.|.+.|=+. ||. .|+.++|.++++.+.+. +...+-+-.+ |+
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~---~~~~~~vi~g---v~---------------- 77 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEA---VNGRVPVIAG---TG---------------- 77 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHH---hCCCCcEEec---cC----------------
Confidence 468899999999999999887 666 99999999999999884 1111111110 11
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEeccc-------------------------cccCC---C-CccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSDD-------------------------VCKHA---D-SLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarG-------------------------I~d~~---G-~~r~d~v~~ii~~ 227 (289)
..+.++.+++++..-++||+.|++=.-. ||+.- | .+..+++.+|++
T Consensus 78 ----~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~- 152 (284)
T cd00950 78 ----SNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE- 152 (284)
T ss_pred ----CccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc-
Confidence 1147788999999999999999997631 45432 2 455667777764
Q ss_pred cCCCceE-E-ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 228 LGLEKTM-F-EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 228 l~~ekli-f-EA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
.| +++ + ++ ++...-..+++++++++.+....++ .-+..++.|--|
T Consensus 153 ~p--~v~giK~s~~~~~~~~~~~~~~~~~~~v~~G~d~-~~~~~~~~G~~G 200 (284)
T cd00950 153 HP--NIVGIKEATGDLDRVSELIALCPDDFAVLSGDDA-LTLPFLALGGVG 200 (284)
T ss_pred CC--CEEEEEECCCCHHHHHHHHHhCCCCeEEEeCChH-hHHHHHHCCCCE
Confidence 32 221 1 22 3444445566777777766544443 345666655433
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.35 Score=45.41 Aligned_cols=143 Identities=18% Similarity=0.174 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
.++++++++-+.|.+.|=+.-.| ..|+.++|.++++.+.+. | +.|+ +|+ +
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi--~gv-------~--------------- 77 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVL--AGA-------G--------------- 77 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEE--Eec-------C---------------
Confidence 68888999999999999765443 589999999999998884 1 1111 111 0
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccCCC-CccHHHHHHHHhccC
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRLG 229 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~~G-~~r~d~v~~ii~~l~ 229 (289)
. +..+.++.+++.-++||+.|++=.- -||+..| .+..+++.++.++.+
T Consensus 78 -----~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~p 151 (289)
T cd00951 78 -----Y-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAERCP 151 (289)
T ss_pred -----C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCC
Confidence 1 3677799999999999999998541 2687766 577888888875344
Q ss_pred CCceEE--e-cCCchhHHHHHHHhCCCcccccCC--CCchhhhhhhcccCCC
Q 022982 230 LEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDH--SQVMDLECLRGRNLGK 276 (289)
Q Consensus 230 ~eklif--E-AP~k~qQ~~~I~~fG~~VNLgI~~--~eVl~LE~LR~g~~G~ 276 (289)
+|+. + ..+-.+...+++.++.+..+..-+ .|.+.++++..|--|-
T Consensus 152 --nivgiKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~l~~Ga~G~ 201 (289)
T cd00951 152 --NLVGFKDGVGDIELMRRIVAKLGDRLLYLGGLPTAEVFALAYLAMGVPTY 201 (289)
T ss_pred --CEEEEEeCCCCHHHHHHHHHhcCCCeEEEeCCCcchHhHHHHHHCCCCEE
Confidence 3332 3 355566677788887766554333 5888888888775553
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.56 Score=43.82 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=99.2
Q ss_pred HHHHHHHhhcccccEEEecCcccc---------ccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHH
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHS---------LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~---------l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
.+-..|+.+| ||++=+||.++. ..+++.+++...+.+ .+.++.. | ........+.++.+.+
T Consensus 24 ~ia~~L~~~G--Vd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~--~-----~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 24 AIYRALAAAG--IDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAV--M-----VDYGNDDIDLLEPASG 93 (266)
T ss_pred HHHHHHHHCC--CCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEE--E-----ECCCCCCHHHHHHHhc
Confidence 4456677887 999999986553 234666777766653 1222221 0 1110023567888899
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHH
Q 022982 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (289)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 192 (289)
.|++.|-|+...-.+ +.-.+.|+.++++|++|. ++..+.. .+ +++.+++.++
T Consensus 94 ~gv~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~--~~~~~a~------------------~~------~~~~~~~~~~ 145 (266)
T cd07944 94 SVVDMIRVAFHKHEF--DEALPLIKAIKEKGYEVF--FNLMAIS------------------GY------SDEELLELLE 145 (266)
T ss_pred CCcCEEEEecccccH--HHHHHHHHHHHHCCCeEE--EEEEeec------------------CC------CHHHHHHHHH
Confidence 999999998755543 445679999999998754 5553311 01 5888899999
Q ss_pred HHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 193 RCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 193 ~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
...++||+.|. |.|..|...+..+.+++..+
T Consensus 146 ~~~~~g~~~i~-----l~DT~G~~~P~~v~~lv~~l 176 (266)
T cd07944 146 LVNEIKPDVFY-----IVDSFGSMYPEDIKRIISLL 176 (266)
T ss_pred HHHhCCCCEEE-----EecCCCCCCHHHHHHHHHHH
Confidence 99999999874 78899999999999988743
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.16 Score=49.07 Aligned_cols=124 Identities=14% Similarity=0.246 Sum_probs=86.0
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (289)
.++.+=||+||..+.+.+.+++..+..+++++. ++ .|+.+.-+|+. -++.++.+++.|++.|.|+--+.+
T Consensus 51 ~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~--~~--~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~ 126 (374)
T PRK05799 51 KIKSIFIGGGTPTYLSLEALEILKETIKKLNKK--ED--LEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLK 126 (374)
T ss_pred ceeEEEECCCcccCCCHHHHHHHHHHHHhCCCC--CC--CEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHH
Confidence 478899999999999999999888888765542 22 13333223333 468999999999999988766552
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcE
Q 022982 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (289)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ 201 (289)
-+.++-.+.|+.+++.||.... +....+. |. +|.+++.+.++..++.|.+.
T Consensus 127 ~l~R~~~~~~~~~ai~~l~~~g~~~v~-~dli~Gl----------------Pg-------qt~e~~~~~l~~~~~l~~~~ 182 (374)
T PRK05799 127 YLGRIHTFEEFLENYKLARKLGFNNIN-VDLMFGL----------------PN-------QTLEDWKETLEKVVELNPEH 182 (374)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHhcCCCE
Confidence 3456677889999999986111 2222221 11 14788888899899999998
Q ss_pred EEE
Q 022982 202 IMI 204 (289)
Q Consensus 202 Vii 204 (289)
|-+
T Consensus 183 is~ 185 (374)
T PRK05799 183 ISC 185 (374)
T ss_pred EEE
Confidence 744
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.59 Score=44.28 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=102.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
+.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ +|+ +
T Consensus 28 ~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi--~gv-------~-------------- 84 (303)
T PRK03620 28 AAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVI--AGA-------G-------------- 84 (303)
T ss_pred HHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C--------------
Confidence 368888999999999999774433 589999999999988773 0 1111 122 0
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccCCC-CccHHHHHHHHhcc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRL 228 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~~G-~~r~d~v~~ii~~l 228 (289)
. +..+.++++++.-++||+.|++=.- -||+..| .+-.+++.++.++.
T Consensus 85 ------~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~ 157 (303)
T PRK03620 85 ------G-GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERC 157 (303)
T ss_pred ------C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhC
Confidence 1 3677899999999999999998652 2687766 67788888888555
Q ss_pred CCCceEE---ecCCchhHHHHHHHhCCCcccc--cCCCCchhhhhhhcccCCC
Q 022982 229 GLEKTMF---EATNPRTSEWFIRRYGPKVNLF--VDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 229 ~~eklif---EAP~k~qQ~~~I~~fG~~VNLg--I~~~eVl~LE~LR~g~~G~ 276 (289)
+ +|+. ..++..+...++++++++..+. -+.+|.+.+.++..|.-|-
T Consensus 158 p--ni~giK~s~~d~~~~~~~~~~~~~~f~vl~G~d~~e~~~~~~~~~G~~G~ 208 (303)
T PRK03620 158 P--NLVGFKDGVGDIELMQRIVRALGDRLLYLGGLPTAEVFAAAYLALGVPTY 208 (303)
T ss_pred C--CEEEEEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCEE
Confidence 4 4444 3567777788888888876654 4445777788887665553
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.46 Score=44.73 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
+.+.+.++++.+.|++.|=+.-. +..|+.++|.++++.+.+. +.-.+-+-. -||
T Consensus 26 ~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~---~~g~~pvi~---gv~----------------- 82 (296)
T TIGR03249 26 AAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVST---AKGKVPVYT---GVG----------------- 82 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHH---hCCCCcEEE---ecC-----------------
Confidence 36888999999999999987433 2689999999999998883 111111100 011
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccCCC-CccHHHHHHHHhccCCC
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRLGLE 231 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~~G-~~r~d~v~~ii~~l~~e 231 (289)
. +..+.+++++..-++|||.|++=.- =||+..| ++-.+++.+++++.+
T Consensus 83 ---~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~-- 156 (296)
T TIGR03249 83 ---G-NTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCP-- 156 (296)
T ss_pred ---c-cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCC--
Confidence 1 3677899999999999999998551 1677666 677888888876555
Q ss_pred ceEE---ecCCchhHHHHHHHhCCCcccc--cCCCCchhhhhhhcccCC
Q 022982 232 KTMF---EATNPRTSEWFIRRYGPKVNLF--VDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 232 klif---EAP~k~qQ~~~I~~fG~~VNLg--I~~~eVl~LE~LR~g~~G 275 (289)
+|+. ..++..+...++++++++..+. -+..|.+.++++..|--|
T Consensus 157 nvvgiKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~~~~Ga~G 205 (296)
T TIGR03249 157 NLVGFKDGIGDMEQMIEITQRLGDRLGYLGGMPTAEVTAPAYLPLGVTS 205 (296)
T ss_pred CEEEEEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCE
Confidence 3332 3567777777888888766554 333577788887765433
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.2 Score=48.84 Aligned_cols=141 Identities=16% Similarity=0.199 Sum_probs=102.7
Q ss_pred ccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022982 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (289)
+|.+-+...+|-.+.+ +.+.+-++.++++|..+..+ +|.+....++.+.++++.+.++|.+.|-+.|
T Consensus 85 ~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~--~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (363)
T TIGR02090 85 VDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS--AEDATRTDIDFLIKVFKRAEEAGADRINIAD 162 (363)
T ss_pred cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE--EeecCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 7777777776655321 35668888999999877643 2444455566788888889999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEE
Q 022982 123 GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (289)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~V 202 (289)
-.-.+.+++-.++|+.++++ +.+ .++..+ .. |...-+-.+...++|||++
T Consensus 163 T~G~~~P~~v~~li~~l~~~-~~~--~l~~H~-Hn-------------------------d~GlA~AN~laA~~aGa~~- 212 (363)
T TIGR02090 163 TVGVLTPQKMEELIKKLKEN-VKL--PISVHC-HN-------------------------DFGLATANSIAGVKAGAEQ- 212 (363)
T ss_pred CCCccCHHHHHHHHHHHhcc-cCc--eEEEEe-cC-------------------------CCChHHHHHHHHHHCCCCE-
Confidence 99999999999999999874 121 244422 11 1223366777889999986
Q ss_pred EEecc--ccccCCCCccHHHHHHHHhc
Q 022982 203 MIDSD--DVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 203 iiEar--GI~d~~G~~r~d~v~~ii~~ 227 (289)
|++- |+=+..||...+.+-..+..
T Consensus 213 -vd~s~~GlGeraGN~~lE~vv~~L~~ 238 (363)
T TIGR02090 213 -VHVTVNGIGERAGNAALEEVVMALKY 238 (363)
T ss_pred -EEEEeeccccccccccHHHHHHHHHH
Confidence 5554 89899999998877666644
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.14 Score=45.99 Aligned_cols=144 Identities=18% Similarity=0.225 Sum_probs=94.9
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
.+-..|..+| ||.+=.|+....-.+.+.+++-.+.... ..+. +|.- .+...++.-++.+++.|.+.|.+.
T Consensus 18 ~i~~~L~~~G--v~~iEvg~~~~~~~~~~~v~~~~~~~~~--~~~~--~~~~----~~~~~i~~~~~~~~~~g~~~i~i~ 87 (237)
T PF00682_consen 18 EIAKALDEAG--VDYIEVGFPFASEDDFEQVRRLREALPN--ARLQ--ALCR----ANEEDIERAVEAAKEAGIDIIRIF 87 (237)
T ss_dssp HHHHHHHHHT--TSEEEEEHCTSSHHHHHHHHHHHHHHHS--SEEE--EEEE----SCHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHhC--CCEEEEcccccCHHHHHHhhhhhhhhcc--cccc--eeee----ehHHHHHHHHHhhHhccCCEEEec
Confidence 3445677777 8888888555555555567766666666 2221 1111 121235555677889999999998
Q ss_pred CCcccC--------C----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 122 VGSLEI--------P----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 122 dGti~i--------~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
...-++ + .+.-.++|+.+++.|++| .|+..+.. -.+++.+.+
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~~~~~------------------------~~~~~~~~~ 141 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGCEDAS------------------------RTDPEELLE 141 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEETTTG------------------------GSSHHHHHH
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCccccc------------------------cccHHHHHH
Confidence 655441 1 234457899999999998 55553210 015889999
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
.+++..++|++.| .|.|..|...++.+.++++
T Consensus 142 ~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~lv~ 173 (237)
T PF00682_consen 142 LAEALAEAGADII-----YLADTVGIMTPEDVAELVR 173 (237)
T ss_dssp HHHHHHHHT-SEE-----EEEETTS-S-HHHHHHHHH
T ss_pred HHHHHHHcCCeEE-----EeeCccCCcCHHHHHHHHH
Confidence 9999999999988 4788889999988888876
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.35 Score=42.99 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=26.4
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHH
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eK 75 (289)
.......+++..++++|++|.|..-..-+..+.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~vk~g~~l~~~~G~~~v~~i 50 (215)
T PRK13813 14 DRERALKIAEELDDYVDAIKVGWPLVLASGLGIIEEL 50 (215)
T ss_pred CHHHHHHHHHhccccCCEEEEcHHHHHhhCHHHHHHH
Confidence 4567788999999999999999655444554444433
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.2 Score=47.92 Aligned_cols=112 Identities=18% Similarity=0.315 Sum_probs=75.6
Q ss_pred cChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 67 MPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 67 ~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
++.+.|++-|+.+++.-=.++ | .++ +... ..++.++.+.+.|.+.|.++-|. |. ++|+++++.|.+
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pf-gvn~~---~~~~--~~~~~~~~~~~~~v~~v~~~~g~---p~----~~i~~lk~~g~~ 111 (307)
T TIGR03151 45 APPDVVRKEIRKVKELTDKPF-GVNIM---LLSP--FVDELVDLVIEEKVPVVTTGAGN---PG----KYIPRLKENGVK 111 (307)
T ss_pred CCHHHHHHHHHHHHHhcCCCc-EEeee---cCCC--CHHHHHHHHHhCCCCEEEEcCCC---cH----HHHHHHHHcCCE
Confidence 467789999999987521111 2 221 1122 56888999999999999998663 32 489999998877
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc---ccccCCCCc-cHHHH
Q 022982 146 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---DVCKHADSL-RADII 221 (289)
Q Consensus 146 v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar---GI~d~~G~~-r~d~v 221 (289)
|.+.++- ++.+++..++|||.|+++++ |-. |.. ..+++
T Consensus 112 v~~~v~s-----------------------------------~~~a~~a~~~GaD~Ivv~g~eagGh~---g~~~~~~ll 153 (307)
T TIGR03151 112 VIPVVAS-----------------------------------VALAKRMEKAGADAVIAEGMESGGHI---GELTTMALV 153 (307)
T ss_pred EEEEcCC-----------------------------------HHHHHHHHHcCCCEEEEECcccCCCC---CCCcHHHHH
Confidence 6643311 45677788999999999887 322 222 35667
Q ss_pred HHHHhccC
Q 022982 222 AKVIGRLG 229 (289)
Q Consensus 222 ~~ii~~l~ 229 (289)
.++.+.++
T Consensus 154 ~~v~~~~~ 161 (307)
T TIGR03151 154 PQVVDAVS 161 (307)
T ss_pred HHHHHHhC
Confidence 77766554
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.35 Score=44.21 Aligned_cols=148 Identities=15% Similarity=0.252 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cc---cCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCccccccccccccC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVG---SL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRDRAFGAYVARA 174 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti---~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~-evg~~~d~~~~~~~~~~ 174 (289)
.+++.++.++++||++||+.-+ +. .++++...++-+.+++.|+++.+ +.+..+.. ... ..|++.
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~-~~~h~~~~~nl~-~~d~~~------- 83 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPED-ILVHAPYLINLG-NPNKEI------- 83 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCc-eEEecceEecCC-CCCHHH-------
Confidence 3788899999999999999754 22 45666777777788899998421 11111100 000 111100
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCC--cc---HHHHHHHHhccCCCceEEecC---------Cc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS--LR---ADIIAKVIGRLGLEKTMFEAT---------NP 240 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~--~r---~d~v~~ii~~l~~eklifEAP---------~k 240 (289)
...+.+.+.+.++..-+.||..|++-.-..+...-. .. .+.+.++++.-.-=+|.+|.- ..
T Consensus 84 -----r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~~~~~~~~~ 158 (281)
T PRK01060 84 -----LEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTAGQGSELGRRF 158 (281)
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcccCCH
Confidence 011245566666666688999999865332211110 00 113333432212235788862 23
Q ss_pred hhHHHHHHHhCCC--cccccCCCCc
Q 022982 241 RTSEWFIRRYGPK--VNLFVDHSQV 263 (289)
Q Consensus 241 ~qQ~~~I~~fG~~--VNLgI~~~eV 263 (289)
.+-..+++.++.. |.+.+|..++
T Consensus 159 ~~~~~l~~~v~~~~~vg~~lD~gH~ 183 (281)
T PRK01060 159 EELARIIDGVEDKSRVGVCLDTCHA 183 (281)
T ss_pred HHHHHHHHhcCCcccEEEEEeHHhH
Confidence 4566788888753 4444665544
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.4 Score=44.31 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt-----------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 170 (289)
.+.+.++.+.+.|+..|=|-|+. --+|.+++.+.|+.+++.-=.. +++-+-- . -|.-
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiA---R----TDa~---- 152 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIA---R----TDAL---- 152 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEE---E----cCch----
Confidence 44555677777999999996655 4679999999999888841111 4555421 1 1110
Q ss_pred cccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch-hHHHHHHH
Q 022982 171 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR-TSEWFIRR 249 (289)
Q Consensus 171 ~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~-qQ~~~I~~ 249 (289)
+. +..+.++.|+++++..+||||.|++++-- ..+.+.++.+.++.--++.-.|..+ ....=+.+
T Consensus 153 -----~~--~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~ 217 (243)
T cd00377 153 -----LA--GEEGLDEAIERAKAYAEAGADGIFVEGLK--------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAE 217 (243)
T ss_pred -----hc--cCCCHHHHHHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Confidence 00 01248899999999999999999999752 5588888988877555555555543 23333444
Q ss_pred hC
Q 022982 250 YG 251 (289)
Q Consensus 250 fG 251 (289)
.|
T Consensus 218 lG 219 (243)
T cd00377 218 LG 219 (243)
T ss_pred CC
Confidence 44
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.49 Score=46.34 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=94.7
Q ss_pred HHHHHHHhhcccccEEEecCc-----ccc-ccChhHHHHHHHHHHhCCceec-CC-cHHHHHHHhCCchHHHHHHHHHHc
Q 022982 42 VLEDIFESMGQFVDGLKFSGG-----SHS-LMPKPFIEEVVKRAHQHDVYVS-TG-DWAEHLIRNGPSAFKEYVEDCKQV 113 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~G-----Ts~-l~p~~~l~eKI~l~~~~gV~v~-~G-tlfE~a~~qg~~~~~~yl~~~k~l 113 (289)
.++++-.......|-+=+|.- ..+ -++.+.|++-|+++|+||+++| +. +++--.-. ..+.+|++.+.++
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~---~~~~~~l~~l~e~ 91 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDEL---ETLERYLDRLVEL 91 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchh---hHHHHHHHHHHHc
Confidence 555555554444788777743 122 2455669999999999999666 34 54322111 1478999999999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcC--CcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHH
Q 022982 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAG--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (289)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G--~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~ 191 (289)
|.|+|+++| .-+|+.+++.| +. +.+....+ + .- .+.+
T Consensus 92 GvDaviv~D----------pg~i~l~~e~~p~l~----ih~S~q~~-------------v--~N------------~~~~ 130 (347)
T COG0826 92 GVDAVIVAD----------PGLIMLARERGPDLP----IHVSTQAN-------------V--TN------------AETA 130 (347)
T ss_pred CCCEEEEcC----------HHHHHHHHHhCCCCc----EEEeeeEe-------------c--CC------------HHHH
Confidence 999999999 57899999977 43 33311100 0 00 3666
Q ss_pred HHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC---CCceEEecC
Q 022982 192 ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG---LEKTMFEAT 238 (289)
Q Consensus 192 ~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~---~eklifEAP 238 (289)
+-.-+.||..| |=+| +++.+.|.+|.++.+ +|-+++.|=
T Consensus 131 ~f~~~~G~~rv-Vl~r-------Els~~ei~~i~~~~~~veiEvfVhGal 172 (347)
T COG0826 131 KFWKELGAKRV-VLPR-------ELSLEEIKEIKEQTPDVEIEVFVHGAL 172 (347)
T ss_pred HHHHHcCCEEE-EeCc-------cCCHHHHHHHHHhCCCceEEEEEecch
Confidence 77778895554 4455 556777888887764 556666653
|
|
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.25 Score=50.30 Aligned_cols=128 Identities=15% Similarity=0.260 Sum_probs=91.6
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHh-CCch-HHHHHHHHHHcCCCEEEecCCccc---
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN-GPSA-FKEYVEDCKQVGFDTIELNVGSLE--- 126 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~q-g~~~-~~~yl~~~k~lGF~~IEISdGti~--- 126 (289)
.-|+.+=||+||-.+.+.+.+.+.++.++++-..+. ..-|+.+.- .|+. -++.++.+++.|++.|.|+--|.+
T Consensus 217 ~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~--~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~v 294 (488)
T PRK08207 217 LKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVK--NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDET 294 (488)
T ss_pred CceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccC--CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHH
Confidence 358899999999999999999999999987521111 111333322 2322 368899999999999999887774
Q ss_pred -------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc
Q 022982 127 -------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (289)
Q Consensus 127 -------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG 198 (289)
-+.++-.+.++.+++.||. +...+ -.+. |. ++.+++.+.++..++.+
T Consensus 295 Lk~igR~ht~e~v~~ai~~ar~~Gf~~In~DL--I~GL----------------Pg-------Et~ed~~~tl~~l~~L~ 349 (488)
T PRK08207 295 LKAIGRHHTVEDIIEKFHLAREMGFDNINMDL--IIGL----------------PG-------EGLEEVKHTLEEIEKLN 349 (488)
T ss_pred HHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEE--EeCC----------------CC-------CCHHHHHHHHHHHHhcC
Confidence 6778888999999999994 32222 1111 11 14788889999999999
Q ss_pred CcEEEEec
Q 022982 199 ADMIMIDS 206 (289)
Q Consensus 199 A~~ViiEa 206 (289)
.+.|-+=.
T Consensus 350 pd~isv~~ 357 (488)
T PRK08207 350 PESLTVHT 357 (488)
T ss_pred cCEEEEEe
Confidence 99887654
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.27 Score=46.44 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=104.3
Q ss_pred HHHHHHHhhcccccEEEecCccccccChh-----------HHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHH
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVE 108 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~ 108 (289)
.++..+++- +|.+.+...+|-.+.+. .+++-|+.++++|..+..+ +|.- .+.-.|+.+.++.+
T Consensus 79 ~~~~A~~~g---~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~-~~r~~~~~~~~~~~ 154 (280)
T cd07945 79 SVDWIKSAG---AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSN-GMRDSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHCC---CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCC-CCcCCHHHHHHHHH
Confidence 344444443 45566666665444332 2566689999999977764 3221 11345678899999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
.+.++|.+.|-+.|-.--+.+.+-.++++.+++. + ....++..+. . |...-+
T Consensus 155 ~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~-~-~~~~i~~H~H-n-------------------------d~Gla~ 206 (280)
T cd07945 155 FLSDLPIKRIMLPDTLGILSPFETYTYISDMVKR-Y-PNLHFDFHAH-N-------------------------DYDLAV 206 (280)
T ss_pred HHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhh-C-CCCeEEEEeC-C-------------------------CCCHHH
Confidence 9999999999999999999999999999999873 1 1123444321 1 233346
Q ss_pred HHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHH
Q 022982 189 RRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 225 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii 225 (289)
..+...++|||++ +++- |+=+..||..++.+-..+
T Consensus 207 AN~laA~~aGa~~--vd~s~~GlGe~aGN~~~E~~v~~L 243 (280)
T cd07945 207 ANVLAAVKAGIKG--LHTTVNGLGERAGNAPLASVIAVL 243 (280)
T ss_pred HHHHHHHHhCCCE--EEEecccccccccCccHHHHHHHH
Confidence 7778899999995 6665 888999999888776666
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.67 Score=44.86 Aligned_cols=125 Identities=15% Similarity=0.247 Sum_probs=88.4
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (289)
-|+.+=||+||..+.+++.|++.++.++++ ++. + ..|+.+.-+|+. -++.++.+++.|++.|.|+--|.
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~--~--~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l 126 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLS--G--LEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELL 126 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 367788899999999999999999999986 321 0 012222223333 36889999999999999987776
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
..+.++..+.|+.+++.|+.... +....+. |. +|.+++.+.++...+.|.+
T Consensus 127 ~~l~r~~~~~~~~~~i~~l~~~g~~~v~-~dli~Gl----------------Pg-------qt~~~~~~~l~~~~~l~~~ 182 (377)
T PRK08599 127 KKIGRTHNEEDVYEAIANAKKAGFDNIS-IDLIYAL----------------PG-------QTIEDFKESLAKALALDIP 182 (377)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCcEE-EeeecCC----------------CC-------CCHHHHHHHHHHHHccCCC
Confidence 35677888999999999986321 1222221 11 1477788888888899999
Q ss_pred EEEEe
Q 022982 201 MIMID 205 (289)
Q Consensus 201 ~ViiE 205 (289)
.|-+-
T Consensus 183 ~i~~y 187 (377)
T PRK08599 183 HYSAY 187 (377)
T ss_pred EEeee
Confidence 88553
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.31 Score=44.79 Aligned_cols=124 Identities=17% Similarity=0.144 Sum_probs=82.2
Q ss_pred hhHHHHHHHhhcccccEE------------EecCccccccChhHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHH
Q 022982 40 HNVLEDIFESMGQFVDGL------------KFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFK 104 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~l------------Kfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~~ 104 (289)
+..+....+...+|.|++ |-|.|+..+.+++.+.+.++-.++.+++|+- .+|- . ...
T Consensus 84 ~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~------~--~~~ 155 (233)
T cd02911 84 LEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD------V--DDE 155 (233)
T ss_pred HHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC------c--CHH
Confidence 555555555555555555 4467888888899999999999998887773 2331 1 456
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
+..+.+.+.|.|+|-++.+.-. +..+ .++|++++ .. +|=++. . | ..+
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~g-~~ad-~~~I~~i~-~~---ipVIgn---G-------g-----I~s------------ 202 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDPG-NHAD-LKKIRDIS-TE---LFIIGN---N-------S-----VTT------------ 202 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCCC-CCCc-HHHHHHhc-CC---CEEEEE---C-------C-----cCC------------
Confidence 7778889999999999876543 2223 36777775 11 343443 1 1 111
Q ss_pred HHHHHHHHHHHHccCcEEEEeccc
Q 022982 185 DLLIRRAERCLEAGADMIMIDSDD 208 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiEarG 208 (289)
.+.+++.++.|||.||| ||+
T Consensus 203 ---~eda~~~l~~GaD~Vmi-GR~ 222 (233)
T cd02911 203 ---IESAKEMFSYGADMVSV-ARA 222 (233)
T ss_pred ---HHHHHHHHHcCCCEEEE-cCC
Confidence 46667777889999998 554
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.34 Score=45.37 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=51.8
Q ss_pred HHHHHHhhcccccEEEecCcc--------ccccChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHHHH
Q 022982 43 LEDIFESMGQFVDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDCK 111 (289)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT--------s~l~p~~~l~eKI~l~~~~-gV~v~~--GtlfE~a~~qg~~~~~~yl~~~k 111 (289)
..+.++.++.|.|++=+-.|| +....++.+.+.++-.++. ++++.- .. +.+...++.+.+.
T Consensus 108 ~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~--------~~~~~~~~a~~l~ 179 (300)
T TIGR01037 108 VAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP--------NVTDITEIAKAAE 179 (300)
T ss_pred HHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC--------ChhhHHHHHHHHH
Confidence 344444455678888776664 4556778899999998875 665553 21 1124667888899
Q ss_pred HcCCCEEEecCCcc
Q 022982 112 QVGFDTIELNVGSL 125 (289)
Q Consensus 112 ~lGF~~IEISdGti 125 (289)
+.|.|.|.|++++-
T Consensus 180 ~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 180 EAGADGLTLINTLR 193 (300)
T ss_pred HcCCCEEEEEccCC
Confidence 99999999997653
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.22 Score=50.28 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=108.3
Q ss_pred HHHHHHHh-hcccccEEEecCccccccChhHHHHHHHHHHhCCceec--CC-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 42 VLEDIFES-MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 42 ~~~DlLe~-ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~--~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
..+..++. +..-||.+-+....+-+ +++++-|+.++++|..+. .. ++-. ...++.+.++.+.+.+.|.+.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~v~~ak~~G~~v~~~i~~t~~p---~~~~~~~~~~a~~l~~~Gad~ 170 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDV---RNLETAVKATKKAGGHAQVAISYTTSP---VHTIDYFVKLAKEMQEMGADS 170 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCeEEEEEEeecCC---CCCHHHHHHHHHHHHHcCCCE
Confidence 44555555 44459999988866655 369999999999996532 11 1111 133456777888889999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHc
Q 022982 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (289)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeA 197 (289)
|=|.|-.--+.+.+-.++|+.+++. +. ..+++.+ ... ...-+-.+-..++|
T Consensus 171 I~i~Dt~G~l~P~~v~~lv~alk~~-~~--~pi~~H~-Hnt-------------------------~GlA~AN~laAiea 221 (448)
T PRK12331 171 ICIKDMAGILTPYVAYELVKRIKEA-VT--VPLEVHT-HAT-------------------------SGIAEMTYLKAIEA 221 (448)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHh-cC--CeEEEEe-cCC-------------------------CCcHHHHHHHHHHc
Confidence 9999999999999999999999984 22 1244422 111 22236677778999
Q ss_pred cCcEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 022982 198 GADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 198 GA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
||+.|=.=-.|+-...||..++.+-..++..|.+
T Consensus 222 Gad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 222 GADIIDTAISPFAGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred CCCEEEeeccccCCCcCCHhHHHHHHHHHhcCCC
Confidence 9996533334888889999988877777666643
|
|
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.13 Score=50.06 Aligned_cols=125 Identities=14% Similarity=0.220 Sum_probs=85.8
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHH-HHHHHHHHcCCCEEEecCCcc-----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFK-EYVEDCKQVGFDTIELNVGSL----- 125 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~-~yl~~~k~lGF~~IEISdGti----- 125 (289)
.-|+-+=||+||..+.|.+.|++.++.++++= .+.+ -.|+.+.-+|+.++ ++++.+++.||+.|.|---|.
T Consensus 54 ~~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f-~~~~--~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL 130 (380)
T PRK09057 54 RTLTSIFFGGGTPSLMQPETVAALLDAIARLW-PVAD--DIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADL 130 (380)
T ss_pred CCcCeEEeCCCccccCCHHHHHHHHHHHHHhC-CCCC--CccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 35889999999999999999999999998731 1111 13555555565554 899999999999988865554
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
.-+.++-.+.++.+++.+..|--.+ ..+. |. ++.+.+.+.++..++.+.+
T Consensus 131 ~~l~R~~~~~~~~~ai~~~~~~~~~v~~dl--i~Gl----------------Pg-------qt~~~~~~~l~~~~~l~p~ 185 (380)
T PRK09057 131 RFLGRLHSVAEALAAIDLAREIFPRVSFDL--IYAR----------------PG-------QTLAAWRAELKEALSLAAD 185 (380)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCccEEEEe--ecCC----------------CC-------CCHHHHHHHHHHHHhcCCC
Confidence 2345555678888888744322222 1111 11 1467778888889999999
Q ss_pred EEEE
Q 022982 201 MIMI 204 (289)
Q Consensus 201 ~Vii 204 (289)
.|-+
T Consensus 186 ~is~ 189 (380)
T PRK09057 186 HLSL 189 (380)
T ss_pred eEEe
Confidence 7644
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.3 Score=45.72 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=105.5
Q ss_pred hhHHHHHHHhhcccccEEEecCcccccc-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHH
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE 108 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~l~-----------p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~ 108 (289)
...++-.+++ =+|.+-+...+|-.+ .-+.+++-++.++++|+.|+.+- |.+..-.++.+.++++
T Consensus 74 ~~di~~a~~~---g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~--eda~r~~~~~l~~~~~ 148 (262)
T cd07948 74 MDDARIAVET---GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS--EDSFRSDLVDLLRVYR 148 (262)
T ss_pred HHHHHHHHHc---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EeeCCCCHHHHHHHHH
Confidence 3455555554 456666655544221 12345666799999998777542 3333344567889999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
.+.++|.+.|-+.|-+--+.+++-.++++.+++. +. .+++..+. . |...-+
T Consensus 149 ~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~-~~--~~i~~H~H-n-------------------------~~Gla~ 199 (262)
T cd07948 149 AVDKLGVNRVGIADTVGIATPRQVYELVRTLRGV-VS--CDIEFHGH-N-------------------------DTGCAI 199 (262)
T ss_pred HHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh-cC--CeEEEEEC-C-------------------------CCChHH
Confidence 9999999999999999999999999999999885 22 34555331 1 122236
Q ss_pred HHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 022982 189 RRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~ 226 (289)
-.+...++|||++ +++. |+=+..||.-.+.+-..+.
T Consensus 200 an~~~a~~aG~~~--vd~s~~GlGeraGn~~~e~~~~~l~ 237 (262)
T cd07948 200 ANAYAALEAGATH--IDTTVLGIGERNGITPLGGLIARMY 237 (262)
T ss_pred HHHHHHHHhCCCE--EEEeccccccccCCccHHHHHHHHH
Confidence 6777789999995 7776 9999999998887766664
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.68 Score=44.47 Aligned_cols=200 Identities=11% Similarity=0.113 Sum_probs=118.8
Q ss_pred chhHHHHHHHhhcc-cccEEEecCccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHH--hCCchHHHHHHHHHHc
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIR--NGPSAFKEYVEDCKQV 113 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~--qg~~~~~~yl~~~k~l 113 (289)
.+.++.+.++.+-+ .+.-+-|..|.....+.+.+.+.++..+++ ++.++.-|-.|+.+. ...-..++.++..|+.
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeA 150 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEA 150 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45555555544444 477788888877777888899999999998 455554355565332 2112468999999999
Q ss_pred CCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 114 GFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 114 GF~~IE-ISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
|++.+- .+.-+. .++.++|.+.|+.+++.|+++-+ |.-.+..|
T Consensus 151 Gl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s--~~i~G~~E----------------------- 205 (343)
T TIGR03551 151 GLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTA--TIMYGHVE----------------------- 205 (343)
T ss_pred CcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccc--eEEEecCC-----------------------
Confidence 999874 222222 26888999999999999998766 33332211
Q ss_pred ccHHHHHHHHHHHHHccCcE------EEE----eccccccCC---CCccHHHHHHHH--hccCCCc--eEEecCC---ch
Q 022982 182 EDVDLLIRRAERCLEAGADM------IMI----DSDDVCKHA---DSLRADIIAKVI--GRLGLEK--TMFEATN---PR 241 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~------Vii----EarGI~d~~---G~~r~d~v~~ii--~~l~~ek--lifEAP~---k~ 241 (289)
+.+++++.+..--+.+.++ |-+ ++-.+++.. ..+..+..-+++ .++=+.+ +-.-|+. ..
T Consensus 206 -t~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~~~l~~ 284 (343)
T TIGR03551 206 -TPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASWVKLGK 284 (343)
T ss_pred -CHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccccccCH
Confidence 3555666665555555543 221 244566531 223343333333 4444333 2466663 22
Q ss_pred hHHHHHHHhCCCcccc-cCCCCch
Q 022982 242 TSEWFIRRYGPKVNLF-VDHSQVM 264 (289)
Q Consensus 242 qQ~~~I~~fG~~VNLg-I~~~eVl 264 (289)
.+..+...+|.|.==| +-+++|.
T Consensus 285 ~~~~~~l~~Gan~~~g~~~~e~v~ 308 (343)
T TIGR03551 285 KLAQVALRCGANDLGGTLMEESIS 308 (343)
T ss_pred HHHHHHHhCCCccCCccceecccc
Confidence 2335556778776445 5555554
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.31 Score=47.99 Aligned_cols=123 Identities=14% Similarity=0.328 Sum_probs=88.0
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (289)
..|+-+=||+||-.+.+.+.|++.++.++++. .+.+. .|+.+.-+|+.+ +++++.++++|++.|.|.--|.+
T Consensus 61 ~~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L 137 (390)
T PRK06582 61 KYIKSIFFGGGTPSLMNPVIVEGIINKISNLA-IIDNQ--TEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDL 137 (390)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHH
Confidence 46999999999999999999999999999863 11111 244555567666 79999999999999988766652
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeee--ecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc
Q 022982 127 ------IPEETLLRYVRLVKSAGLKAKPKFAV--MFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (289)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~v~~E~g~--k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG 198 (289)
-+.++-.+.++.+++.+. .+.+ ..+. |. +|.+.+.+.++..++.+
T Consensus 138 ~~lgR~h~~~~~~~ai~~~~~~~~----~v~~DlI~Gl----------------Pg-------qt~e~~~~~l~~~~~l~ 190 (390)
T PRK06582 138 KKLGRTHDCMQAIKTIEAANTIFP----RVSFDLIYAR----------------SG-------QTLKDWQEELKQAMQLA 190 (390)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCC----cEEEEeecCC----------------CC-------CCHHHHHHHHHHHHhcC
Confidence 345566677888877522 2333 2211 11 14778889999999999
Q ss_pred CcEEEE
Q 022982 199 ADMIMI 204 (289)
Q Consensus 199 A~~Vii 204 (289)
.++|-+
T Consensus 191 p~his~ 196 (390)
T PRK06582 191 TSHISL 196 (390)
T ss_pred CCEEEE
Confidence 987744
|
|
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.54 Score=44.20 Aligned_cols=156 Identities=18% Similarity=0.173 Sum_probs=106.3
Q ss_pred hhHHHHHHHhhcccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceec------CCcHHHHHHHhCCch
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSA 102 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~ 102 (289)
.+.++..+++- +|.+.+...+|-.+.+ +.+++.++.++++|..+. .|..++--. .++.
T Consensus 76 ~~dv~~A~~~g---~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~--~~~~ 150 (274)
T cd07938 76 LRGAERALAAG---VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV--PPER 150 (274)
T ss_pred HHHHHHHHHcC---cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC--CHHH
Confidence 34555556543 6777777766643222 456677999999999873 232222111 3347
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.++.+.+.++|.+.|-+.|-.-.+.+.+-.++|+.+++. +. ..++++.. ..
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~i~~H~-Hn------------------------- 202 (274)
T cd07938 151 VAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLER-FP-DEKLALHF-HD------------------------- 202 (274)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHH-CC-CCeEEEEE-CC-------------------------
Confidence 7888889999999999999999999999999999999985 21 12345532 11
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecc--ccc------cCCCCccHHHHHHHHhccCC
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSD--DVC------KHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEar--GI~------d~~G~~r~d~v~~ii~~l~~ 230 (289)
|...-+-.+...++|||++ +++- ||= +..||..++.+-..++..+.
T Consensus 203 d~GlA~AN~laA~~aGa~~--id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~~g~ 256 (274)
T cd07938 203 TRGQALANILAALEAGVRR--FDSSVGGLGGCPFAPGATGNVATEDLVYMLEGMGI 256 (274)
T ss_pred CCChHHHHHHHHHHhCCCE--EEEeccccCCCCCCCCccCCcCHHHHHHHHHhcCC
Confidence 2233467788899999995 5664 654 56899998877766665443
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.89 Score=44.08 Aligned_cols=141 Identities=16% Similarity=0.249 Sum_probs=94.5
Q ss_pred HHHHHHHhhcccccEEEecC-----------ccccccChhHHHHHHHHHHhCCce--ecCCcHHHHHHHhCCchHHHHHH
Q 022982 42 VLEDIFESMGQFVDGLKFSG-----------GSHSLMPKPFIEEVVKRAHQHDVY--VSTGDWAEHLIRNGPSAFKEYVE 108 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~-----------GTs~l~p~~~l~eKI~l~~~~gV~--v~~GtlfE~a~~qg~~~~~~yl~ 108 (289)
.+-..|+.+| ||.+=+|. |.....+.+.+++-.+..+..-+- .-|| .+ .. +-++
T Consensus 28 ~ia~~Ld~aG--V~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg--------~~--~~-~dl~ 94 (333)
T TIGR03217 28 AIAAALDEAG--VDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPG--------IG--TV-HDLK 94 (333)
T ss_pred HHHHHHHHcC--CCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccC--------cc--CH-HHHH
Confidence 4445566677 77777752 344445556666666554432221 1133 11 23 4578
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
.+.+.|.+.|-|....-+.+ .-.+.|+.+++.|++|.. ...... ..+++.++
T Consensus 95 ~a~~~gvd~iri~~~~~e~d--~~~~~i~~ak~~G~~v~~--~l~~s~------------------------~~~~e~l~ 146 (333)
T TIGR03217 95 AAYDAGARTVRVATHCTEAD--VSEQHIGMARELGMDTVG--FLMMSH------------------------MTPPEKLA 146 (333)
T ss_pred HHHHCCCCEEEEEeccchHH--HHHHHHHHHHHcCCeEEE--EEEccc------------------------CCCHHHHH
Confidence 89999999999987655543 346899999999987542 332100 11589999
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
++++.-.++||+.| .|.|..|...++.+.+++..+
T Consensus 147 ~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 147 EQAKLMESYGADCV-----YIVDSAGAMLPDDVRDRVRAL 181 (333)
T ss_pred HHHHHHHhcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 99999999999976 478999999999988888644
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK09856 fructoselysine 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.62 Score=42.36 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCC-CccccccccccccCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP-SDRDRAFGAYVARAP 175 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg-~~~d~~~~~~~~~~~ 175 (289)
.+.+-++.++++||+.||+..+.. +++..+..++-+.+++.|+++.+ ++.-...-... ...|+. .
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s-~~~~~~~~~~~~~~~~~~--------~ 84 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIG-YTPETNGYPYNMMLGDEH--------M 84 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEE-ecCcccCcCccccCCCHH--------H
Confidence 689999999999999999965421 34455677788888999998754 22100000000 000100 0
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc--ccccCCCCcc------HHHHHHHHhccCCCceEEec--C-------
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLR------ADIIAKVIGRLGLEKTMFEA--T------- 238 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r------~d~v~~ii~~l~~eklifEA--P------- 238 (289)
.....+.+.+.++.+-..||..|++-+- +........+ -..+.+++++.|+ +|.+|- |
T Consensus 85 ----r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~iE~~~~~~~~~~~ 159 (275)
T PRK09856 85 ----RRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGM-DLILEPLTPYESNVVC 159 (275)
T ss_pred ----HHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEecCCCCcccccC
Confidence 0112455566667777899999988652 1111111111 1233444455565 577885 2
Q ss_pred CchhHHHHHHHhC-CCcccccCC
Q 022982 239 NPRTSEWFIRRYG-PKVNLFVDH 260 (289)
Q Consensus 239 ~k~qQ~~~I~~fG-~~VNLgI~~ 260 (289)
.+..-..+++..+ |+|-+.+++
T Consensus 160 t~~~~~~l~~~~~~~~v~~~~D~ 182 (275)
T PRK09856 160 NANDVLHALALVPSPRLFSMVDI 182 (275)
T ss_pred CHHHHHHHHHHcCCCcceeEEee
Confidence 3567888999998 566443443
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.69 Score=44.09 Aligned_cols=102 Identities=23% Similarity=0.264 Sum_probs=69.6
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCc--------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccc
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGS--------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR 165 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGt--------------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~ 165 (289)
+..+.+.++++.+.|...|=|-|.+ --+|.+++++.|+.+++. +.-++|-+ .. .-|.
T Consensus 91 ~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a--~~~~~~~I---iA----RTDa 161 (285)
T TIGR02320 91 FEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA--QTTEDFMI---IA----RVES 161 (285)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh--ccCCCeEE---EE----eccc
Confidence 3366777888888999999996643 357999999999999885 11233433 11 1111
Q ss_pred ccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 166 AFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
. +.. ...++.|+++++..+||||.|++++ +....+.+.++.+.++
T Consensus 162 ----~-----~~~---~~~~eAi~Ra~ay~eAGAD~ifv~~-------~~~~~~ei~~~~~~~~ 206 (285)
T TIGR02320 162 ----L-----ILG---KGMEDALKRAEAYAEAGADGIMIHS-------RKKDPDEILEFARRFR 206 (285)
T ss_pred ----c-----ccc---CCHHHHHHHHHHHHHcCCCEEEecC-------CCCCHHHHHHHHHHhh
Confidence 0 101 1378999999999999999999994 1234566777776664
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.78 Score=44.74 Aligned_cols=144 Identities=23% Similarity=0.316 Sum_probs=96.1
Q ss_pred hHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (289)
..+-+.|..+| ||.+=.||= ..+++ -.+.++.+.+.+.....-+|. + ...+-++.+.+.|.+.|.|
T Consensus 25 ~~ia~~L~~~G--v~~IEvG~p---~~~~~-~~e~i~~i~~~~~~~~v~~~~-----r---~~~~di~~a~~~g~~~i~i 90 (363)
T TIGR02090 25 VEIARKLDELG--VDVIEAGFP---IASEG-EFEAIKKISQEGLNAEICSLA-----R---ALKKDIDKAIDCGVDSIHT 90 (363)
T ss_pred HHHHHHHHHcC--CCEEEEeCC---CCChH-HHHHHHHHHhcCCCcEEEEEc-----c---cCHHHHHHHHHcCcCEEEE
Confidence 35566777888 888888763 33433 245555555544322222333 2 1244578889999999999
Q ss_pred cCCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 121 NVGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 121 SdGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
+..+-++ +. +.-.+.|+.+++.|++| +++..+.. ..|++.++
T Consensus 91 ~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v--~~~~eda~------------------------r~~~~~l~ 144 (363)
T TIGR02090 91 FIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIV--EFSAEDAT------------------------RTDIDFLI 144 (363)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEE--EEEEeecC------------------------CCCHHHHH
Confidence 7765333 33 44457889999999875 45553210 01588899
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
+.+++..++||+.|. |+|..|...++.+.++++.+-
T Consensus 145 ~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 145 KVFKRAEEAGADRIN-----IADTVGVLTPQKMEELIKKLK 180 (363)
T ss_pred HHHHHHHhCCCCEEE-----EeCCCCccCHHHHHHHHHHHh
Confidence 999999999998764 688889999888888887653
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.69 Score=41.73 Aligned_cols=148 Identities=17% Similarity=0.156 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.+++.++.++++||+.||+..-. ..+..++-+.+++.|+++.. ++. +..... ..++. ....|..- .
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----~~~~~~l~~~l~~~gl~v~~-~~~--~~~~~~-~~~~~--~~~~~~~~----~ 80 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----DWDAEALKARLAAAGLEQVL-FNL--PAGDWA-AGERG--IACLPGRE----E 80 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCeEEE-EeC--CCCccc-cCCCc--cccCCccH----H
Confidence 79999999999999999996521 23566777788899999754 221 110000 00000 00000000 0
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCC--CCccH---HHHHHH---HhccCCCceEEec-----------CCchh
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHA--DSLRA---DIIAKV---IGRLGLEKTMFEA-----------TNPRT 242 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~--G~~r~---d~v~~i---i~~l~~eklifEA-----------P~k~q 242 (289)
+..+.+-+.++..-+.||..|.+.+-...++. .+... +.+.++ +++.|+ ++.+|. ....+
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi-~l~lE~~~~~~~~~~~l~t~~~ 159 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGL-TLLIEPINSFDMPGFFLTTTEQ 159 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-EEEEEECCcccCCCChhcCHHH
Confidence 00122223444455779999887653221110 01111 223333 344443 377784 24566
Q ss_pred HHHHHHHhC-CCcccccCCCCch
Q 022982 243 SEWFIRRYG-PKVNLFVDHSQVM 264 (289)
Q Consensus 243 Q~~~I~~fG-~~VNLgI~~~eVl 264 (289)
-..+|+..+ |||.+-.|+.+..
T Consensus 160 ~~~li~~v~~~~~~i~~D~~h~~ 182 (254)
T TIGR03234 160 ALAVIDDVGRENLKLQYDLYHMQ 182 (254)
T ss_pred HHHHHHHhCCCCEeEeeehhhhh
Confidence 678899988 6666656666544
|
This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.4 Score=44.44 Aligned_cols=80 Identities=8% Similarity=0.073 Sum_probs=51.8
Q ss_pred hhHHHHHHHhhccc-ccEEEecCcccc-------ccChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHH
Q 022982 40 HNVLEDIFESMGQF-VDGLKFSGGSHS-------LMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVE 108 (289)
Q Consensus 40 ~~~~~DlLe~ag~y-ID~lKfg~GTs~-------l~p~~~l~eKI~l~~~~-gV~v~~--GtlfE~a~~qg~~~~~~yl~ 108 (289)
+..+.+..+.+-++ +|.+=+-++|-. +...+.+.+.++-.++. ++++.- ++.. ..+.+.+..+
T Consensus 110 ~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------~~~~~~~~a~ 183 (289)
T cd02810 110 KEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF------DLEDIVELAK 183 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC------CHHHHHHHHH
Confidence 34555555566666 788877766543 33456778888888776 444332 2111 1125777888
Q ss_pred HHHHcCCCEEEecCCcc
Q 022982 109 DCKQVGFDTIELNVGSL 125 (289)
Q Consensus 109 ~~k~lGF~~IEISdGti 125 (289)
.+.+.|.|.|.+++++.
T Consensus 184 ~l~~~Gad~i~~~~~~~ 200 (289)
T cd02810 184 AAERAGADGLTAINTIS 200 (289)
T ss_pred HHHHcCCCEEEEEcccC
Confidence 89999999999998764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.46 Score=45.31 Aligned_cols=130 Identities=18% Similarity=0.298 Sum_probs=88.2
Q ss_pred chhHHHHHHHhhcc-cccEEEecCccccccChhHHHHHHHHHHhCC-c---eecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-V---YVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V---~v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
...++..+++.+.+ -+..+.|.+|.-.+.+ .+.+.++.+++++ + .+.+ |+++ .++.+.+++
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~tGGEPllr~--dl~~li~~i~~~~~l~~i~itTNG~ll-----------~~~~~~L~~ 112 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRLTGGEPLVRR--GCDQLVARLGKLPGLEELSLTTNGSRL-----------ARFAAELAD 112 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECcCCCccc--cHHHHHHHHHhCCCCceEEEEeChhHH-----------HHHHHHHHH
Confidence 45577777665433 3788999999988776 5889999888875 2 2334 5443 345677889
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~-~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.|++.|-||=.+++ -+.+.-.+.|+.+++.|+ .++-.+-+..+
T Consensus 113 aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g-------------------------- 166 (329)
T PRK13361 113 AGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRG-------------------------- 166 (329)
T ss_pred cCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECC--------------------------
Confidence 99999999987763 234567788889999888 44433322110
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
.+.+++.+.++-..+-|+++..+|--
T Consensus 167 ~N~~ei~~~~~~~~~~gi~~~~ie~m 192 (329)
T PRK13361 167 QNDDEVLDLVEFCRERGLDIAFIEEM 192 (329)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEecc
Confidence 02445555566666789999999864
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.52 Score=49.14 Aligned_cols=157 Identities=11% Similarity=0.142 Sum_probs=107.3
Q ss_pred HHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022982 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (289)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (289)
-.+..++.|.+. ||.+-+....+-+ +.+++-|+.+|++|..+... .+.- +=...++.+-++.+.+.+.|.+.|-
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~~~~~~~~Gad~I~ 167 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP---RNLQAAIQAAKKHGAHAQGTISYTT-SPVHTLETYLDLAEELLEMGVDSIC 167 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCEEEEEEEecc-CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 355556655444 9998888655443 57999999999999876643 1100 1012234666777778889999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
|.|-.--+.+.+-.++|+.+++. +. . .++..+ ..+ ...-+-..-..++|||
T Consensus 168 i~Dt~G~~~P~~v~~lv~~lk~~-~~-~-pi~~H~-Hnt-------------------------~Gla~An~laAveaGa 218 (582)
T TIGR01108 168 IKDMAGILTPKAAYELVSALKKR-FG-L-PVHLHS-HAT-------------------------TGMAEMALLKAIEAGA 218 (582)
T ss_pred ECCCCCCcCHHHHHHHHHHHHHh-CC-C-ceEEEe-cCC-------------------------CCcHHHHHHHHHHhCC
Confidence 99999999999999999999884 11 1 244432 111 2223566777899999
Q ss_pred cEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 022982 200 DMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 200 ~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
+.|=.=-.|+=...||...+.+-..++..+.+
T Consensus 219 ~~vd~ai~GlG~~tGn~~le~vv~~L~~~g~~ 250 (582)
T TIGR01108 219 DGIDTAISSMSGGTSHPPTETMVAALRGTGYD 250 (582)
T ss_pred CEEEeccccccccccChhHHHHHHHHHhcCCC
Confidence 96544335888899998888776666655543
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.97 Score=40.43 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~-~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.++++.|++.|-|.|-+......-|. ++..++++.+++ .|+.+.+++.
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~------------------------------ 127 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS------------------------------ 127 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC------------------------------
Confidence 46789999999999988654443332 566789999998 6666443221
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCC---CCccHHHHHHHHhccCCCceEEecCCc-hhHHHHHHHhCC
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHA---DSLRADIIAKVIGRLGLEKTMFEATNP-RTSEWFIRRYGP 252 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~---G~~r~d~v~~ii~~l~~eklifEAP~k-~qQ~~~I~~fG~ 252 (289)
+ .+++++..++|+++|.+..+|..... .....+.+.++.+.++ -.++-+---+ ..+..-+...|.
T Consensus 128 -t----~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iPvia~GGI~t~~~~~~~l~~Ga 196 (221)
T PRK01130 128 -T----LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CPVIAEGRINTPEQAKKALELGA 196 (221)
T ss_pred -C----HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CCEEEECCCCCHHHHHHHHHCCC
Confidence 1 23456788999999999877765432 2234566777766553 2344444432 334444445553
|
|
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.86 Score=43.50 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=80.3
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCc--eecC-CcHHHHHHHhCCchHHHHHHHHHHcCC
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF 115 (289)
.+....+.++..|. -.+-|.+|=-.+.| .+.+.++.+++.|+ .+.| |++++- .+ +..++.|.
T Consensus 60 s~ee~~~~i~e~g~--~~V~i~GGEPLL~p--dl~eiv~~~~~~g~~v~l~TNG~ll~~-------~~----~~l~~~~~ 124 (318)
T TIGR03470 60 SVEECLRAVDECGA--PVVSIPGGEPLLHP--EIDEIVRGLVARKKFVYLCTNALLLEK-------KL----DKFEPSPY 124 (318)
T ss_pred CHHHHHHHHHHcCC--CEEEEeCccccccc--cHHHHHHHHHHcCCeEEEecCceehHH-------HH----HHHHhCCC
Confidence 34455555555553 35778889888877 58999999999986 4446 776542 22 23466788
Q ss_pred CEEEec-CCcccCC---------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHH
Q 022982 116 DTIELN-VGSLEIP---------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (289)
Q Consensus 116 ~~IEIS-dGti~i~---------~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (289)
..|-|| ||.-+.- .+.-.+.|+.++++|+.|...+.+-. .. +++
T Consensus 125 ~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~-------~~-------------------n~~ 178 (318)
T TIGR03470 125 LTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFN-------DT-------------------DPE 178 (318)
T ss_pred cEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeC-------CC-------------------CHH
Confidence 889998 6643221 23345789999999987655544411 00 244
Q ss_pred HHHHHHHHHHHccCcEEEEe
Q 022982 186 LLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 186 ~~I~~~~~dLeAGA~~ViiE 205 (289)
++.+.++..-+.|++.|.+-
T Consensus 179 ei~~~~~~~~~lGv~~i~i~ 198 (318)
T TIGR03470 179 EVAEFFDYLTDLGVDGMTIS 198 (318)
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 45555555567899888773
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.69 Score=43.10 Aligned_cols=130 Identities=21% Similarity=0.312 Sum_probs=88.1
Q ss_pred chhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCc-e--ecC-CcHHHHHHHhCCchHHHHHHHHHHc
Q 022982 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-Y--VST-GDWAEHLIRNGPSAFKEYVEDCKQV 113 (289)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~--v~~-GtlfE~a~~qg~~~~~~yl~~~k~l 113 (289)
...++..+++.+.++ +..+.|.+|--.+.+ .+.+.++.++++|+ . +.+ |+++ +++++.+++.
T Consensus 41 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~--~l~~iv~~l~~~g~~~v~i~TNG~ll-----------~~~~~~l~~~ 107 (302)
T TIGR02668 41 SPEEIERIVRVASEFGVRKVKITGGEPLLRK--DLIEIIRRIKDYGIKDVSMTTNGILL-----------EKLAKKLKEA 107 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECccccccc--CHHHHHHHHHhCCCceEEEEcCchHH-----------HHHHHHHHHC
Confidence 566788888766554 788999999987766 47789999999976 3 344 5543 3456667889
Q ss_pred CCCEEEecCCccc----------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 114 GFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 114 GF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
|++.|-||=.+.+ -+.+...+.|+.+++.|+. ++-.+-+..+ .
T Consensus 108 g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g-------~------------------- 161 (302)
T TIGR02668 108 GLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKG-------I------------------- 161 (302)
T ss_pred CCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCC-------C-------------------
Confidence 9999999876652 2456678899999999986 4443333110 0
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+.+++.+.++-..+.|++.-.+|--
T Consensus 162 n~~ei~~~~~~~~~~g~~~~~ie~~ 186 (302)
T TIGR02668 162 NDNEIPDMVEFAAEGGAILQLIELM 186 (302)
T ss_pred CHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 1334444444445689987777754
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.4 Score=40.96 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
.++++++++-+.|.+.+=+... +..|+.++|.++++.+.+. +=++.-=+|+-
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~------------------------ 78 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG------------------------ 78 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc------------------------
Confidence 6888999999999999988654 4689999999999998873 11111112331
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccCC----CCccHHHHHHHHhcc
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVIGRL 228 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~~----G~~r~d~v~~ii~~l 228 (289)
..+.++.|++++..-++||+.|++=.- -||+.- -++..+.+.++.+ +
T Consensus 79 ---~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~-~ 154 (289)
T PF00701_consen 79 ---ANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK-I 154 (289)
T ss_dssp ---SSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT-S
T ss_pred ---chhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc-C
Confidence 014788899999999999999998751 267663 4777888888887 5
Q ss_pred C-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCCC
Q 022982 229 G-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 229 ~-~eklifEAP~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G~ 276 (289)
+ +-=+=....+..+...++++.++++.+... +|-.-+.+|..|.-|-
T Consensus 155 ~nv~giK~s~~~~~~~~~~~~~~~~~~~v~~G-~d~~~~~~l~~G~~G~ 202 (289)
T PF00701_consen 155 PNVVGIKDSSGDLERLIQLLRAVGPDFSVFCG-DDELLLPALAAGADGF 202 (289)
T ss_dssp TTEEEEEESSSBHHHHHHHHHHSSTTSEEEES-SGGGHHHHHHTTSSEE
T ss_pred CcEEEEEcCchhHHHHHHHhhhcccCeeeecc-ccccccccccccCCEE
Confidence 5 222223445555677788888999888666 4444579998887665
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.3 Score=35.57 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=80.8
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCC-----ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---
Q 022982 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--- 125 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-----V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--- 125 (289)
++.+-|+.|+..+.+.+.+.+.++.++++. ..+...| .+...-++.++.+++.|++.|-+|=-+.
T Consensus 52 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-------n~~~~~~~~~~~l~~~~~~~i~isl~~~~~~ 124 (216)
T smart00729 52 VGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIET-------RPGTLTEELLEALKEAGVNRVSLGVQSGSDE 124 (216)
T ss_pred eeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe-------CcccCCHHHHHHHHHcCCCeEEEecccCCHH
Confidence 588999999999999877888888888874 2222211 1111236788999999999998876653
Q ss_pred -------cCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHc
Q 022982 126 -------EIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (289)
Q Consensus 126 -------~i~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeA 197 (289)
.-+.+...+.|+.+++.| +.|..-+-+ +. .. .+.+++.+.++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~~--g~-----~~------------------~~~~~~~~~~~~~~~~ 179 (216)
T smart00729 125 VLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIV--GL-----PG------------------ETEEDFEETLKLLKEL 179 (216)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEEe--cC-----CC------------------CCHHHHHHHHHHHHHc
Confidence 345688899999999999 444333322 11 00 1255666666666788
Q ss_pred cCcEEEEe
Q 022982 198 GADMIMID 205 (289)
Q Consensus 198 GA~~ViiE 205 (289)
|++.|.+-
T Consensus 180 ~~~~i~~~ 187 (216)
T smart00729 180 GPDRVSIF 187 (216)
T ss_pred CCCeEEee
Confidence 99866543
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.55 Score=47.99 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=97.7
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
.+-..|..+| ||.+=+||..+.=.+.+.+++..+.. .+..++. |. .-.+..++.-++..++.|.+.|-+.
T Consensus 30 ~ia~~L~~~G--v~~IE~G~p~~s~~d~~~v~~i~~~~--~~~~i~a--~~----r~~~~did~a~~a~~~~~~~~v~i~ 99 (513)
T PRK00915 30 QIAKQLERLG--VDVIEAGFPASSPGDFEAVKRIARTV--KNSTVCG--LA----RAVKKDIDAAAEALKPAEAPRIHTF 99 (513)
T ss_pred HHHHHHHHcC--CCEEEEcCCCCChHHHHHHHHHHhhC--CCCEEEE--Ec----cCCHHHHHHHHHHhhcCCCCEEEEE
Confidence 5566778888 99999998654333444454443322 2344432 11 0112257777777778999999998
Q ss_pred CCcccCCh--------hH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 122 VGSLEIPE--------ET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 122 dGti~i~~--------~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
..+-++-. ++ -.+.|+.+++.|++| +|+..+.. -.|++.+++
T Consensus 100 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~f~~ed~~------------------------r~d~~~l~~ 153 (513)
T PRK00915 100 IATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDV--EFSAEDAT------------------------RTDLDFLCR 153 (513)
T ss_pred ECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEeCCCC------------------------CCCHHHHHH
Confidence 87754432 22 247899999999886 45553210 015888999
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.++...++||+.| .|+|..|-..+..+.++++.+
T Consensus 154 ~~~~~~~~Ga~~i-----~l~DTvG~~~P~~~~~~i~~l 187 (513)
T PRK00915 154 VVEAAIDAGATTI-----NIPDTVGYTTPEEFGELIKTL 187 (513)
T ss_pred HHHHHHHcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 9999999999865 478999999999888888654
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.96 Score=42.18 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=86.5
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
++.++..|-|+|=+.... ++.++..++++.+++.|+.+.-|+.-
T Consensus 126 i~~a~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~---------------------------------- 169 (260)
T PRK00278 126 IYEARAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHD---------------------------------- 169 (260)
T ss_pred HHHHHHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 778999999999998877 46788999999999999887777654
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCCccc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPKVNL 256 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e-klifEAP~-k~qQ~~~I~~fG~~VNL 256 (289)
.+++++.+++||+.|-+-.|.+-. -....+...+++..++-+ .+|-|+=- ...+...+...|.+.=|
T Consensus 170 -~~E~~~A~~~gadiIgin~rdl~~--~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vl 238 (260)
T PRK00278 170 -EEELERALKLGAPLIGINNRNLKT--FEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVL 238 (260)
T ss_pred -HHHHHHHHHcCCCEEEECCCCccc--ccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 244566779999999987775422 234477888888877644 67889875 47788888888988766
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.24 Score=46.81 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
..-.+..++.|.++|-|-|| ++..+.|+.+.++|.-|.-.+|..-. + +..++.+....+- ...
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------~~~~~~I~al~~agIpV~gHiGL~pq-~------~~~~gg~~i~grt----~~~ 159 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------EEVAETIKRLVERGIPVMGHLGLTPQ-S------VNVLGGYKVQGRD----EEA 159 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHCCCCEeeeecccce-e------ecccCCeeeecCC----HHH
Confidence 33456677899999999998 46778999999999999888888422 1 1111111111110 112
Q ss_pred HHHHHHHHHHHHHccCcEEEEec
Q 022982 184 VDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.+++|+++++..+|||+.|.+|+
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~ 182 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLEC 182 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC
Confidence 67999999999999999999998
|
|
| >COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.94 Score=40.70 Aligned_cols=146 Identities=18% Similarity=0.229 Sum_probs=83.7
Q ss_pred chHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISd-Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 179 (289)
..+++.++.|+++||+.||++. +....+.++..++.+.+++.|+++..--...+.. . ..+.. .+
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~--~--~~~~~--------~~--- 79 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNL--L--SPDEE--------ER--- 79 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCc--C--CCchh--------hH---
Confidence 4789999999999999999998 4444444447888889999999865533332210 0 01100 00
Q ss_pred ccccHHHHHHHHHHHHHccCcEEEEeccccccC------CCCc--cHHHH---HHHHhccCCCceEEec---C-----Cc
Q 022982 180 YVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH------ADSL--RADII---AKVIGRLGLEKTMFEA---T-----NP 240 (289)
Q Consensus 180 ~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~------~G~~--r~d~v---~~ii~~l~~eklifEA---P-----~k 240 (289)
....+.+.+.++-.-+.||.+|++..-..... ...+ -.+.+ ..+++.. -=++-+|. | +.
T Consensus 80 -~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~-~i~l~~e~~~~~~~~~~~~ 157 (274)
T COG1082 80 -EEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEEL-GIGLALENHHHPGNVVETG 157 (274)
T ss_pred -HHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHh-CCceEEeecCCccceeecC
Confidence 01244444555556678999888776321111 1111 12222 2333334 33455664 3 33
Q ss_pred hhHHHHHHHhCCCcccc--cCCCCch
Q 022982 241 RTSEWFIRRYGPKVNLF--VDHSQVM 264 (289)
Q Consensus 241 ~qQ~~~I~~fG~~VNLg--I~~~eVl 264 (289)
.|...++...+.. |++ +++.+..
T Consensus 158 ~~~~~~~~~~~~~-~v~~~lD~~H~~ 182 (274)
T COG1082 158 ADALDLLREVDSP-NVGLLLDTGHAF 182 (274)
T ss_pred HHHHHHHHhcCCC-ceEEEEecCchh
Confidence 5568888888876 665 6665543
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.72 Score=48.16 Aligned_cols=153 Identities=14% Similarity=0.159 Sum_probs=107.3
Q ss_pred hhHHHHHHHhhcc-cccEEEecCccccccChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCC
Q 022982 40 HNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (289)
Q Consensus 40 ~~~~~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G---tlfE~a~~qg~~~~~~yl~~~k~lGF 115 (289)
-+-.+..++.|.+ -||.+.+....+-+ +.+++-++.++++|..+... |+-- ...++.+-++.+.+.+.|.
T Consensus 95 d~vv~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~p---~~t~~~~~~~a~~l~~~Ga 168 (592)
T PRK09282 95 DDVVEKFVEKAAENGIDIFRIFDALNDV---RNMEVAIKAAKKAGAHVQGTISYTTSP---VHTIEKYVELAKELEEMGC 168 (592)
T ss_pred chhhHHHHHHHHHCCCCEEEEEEecChH---HHHHHHHHHHHHcCCEEEEEEEeccCC---CCCHHHHHHHHHHHHHcCC
Confidence 3445666666554 59999998766655 57999999999999876521 1100 1223466677777888999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHH
Q 022982 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195 (289)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dL 195 (289)
+.|=|.|-.--+.+++-.++++.+++. +. -.+++.. ... ...-+...-..+
T Consensus 169 d~I~i~Dt~G~~~P~~~~~lv~~lk~~-~~--~pi~~H~-Hnt-------------------------~Gla~An~laAv 219 (592)
T PRK09282 169 DSICIKDMAGLLTPYAAYELVKALKEE-VD--LPVQLHS-HCT-------------------------SGLAPMTYLKAV 219 (592)
T ss_pred CEEEECCcCCCcCHHHHHHHHHHHHHh-CC--CeEEEEE-cCC-------------------------CCcHHHHHHHHH
Confidence 999999999999999999999999884 22 1245532 111 122266777789
Q ss_pred HccCcEEEEecc--ccccCCCCccHHHHHHHHhccC
Q 022982 196 EAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 196 eAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
+|||+. |++- |+-...||...+.+-..++..+
T Consensus 220 ~aGad~--vD~ai~g~g~~agn~~~e~vv~~L~~~g 253 (592)
T PRK09282 220 EAGVDI--IDTAISPLAFGTSQPPTESMVAALKGTP 253 (592)
T ss_pred HhCCCE--EEeeccccCCCcCCHhHHHHHHHHHhCC
Confidence 999996 5554 8888889888877666665544
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.77 Score=43.06 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=51.3
Q ss_pred hhHHHHHHHhhccc--ccEEEecC--------ccccccChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHH
Q 022982 40 HNVLEDIFESMGQF--VDGLKFSG--------GSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYV 107 (289)
Q Consensus 40 ~~~~~DlLe~ag~y--ID~lKfg~--------GTs~l~p~~~l~eKI~l~~~~-gV~v~~-GtlfE~a~~qg~~~~~~yl 107 (289)
+..+.+..+.+-++ .|++=+-. |.......+.+.+-++-.+++ ++++.- -+. +.+.+.++.
T Consensus 103 ~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-------~~~~~~~~a 175 (301)
T PRK07259 103 EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-------NVTDIVEIA 175 (301)
T ss_pred HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-------CchhHHHHH
Confidence 34444445555555 67775511 556667778889999988887 665543 111 112466778
Q ss_pred HHHHHcCCCEEEecCCcc
Q 022982 108 EDCKQVGFDTIELNVGSL 125 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti 125 (289)
+.+.+.|.|.|.+++.+.
T Consensus 176 ~~l~~~G~d~i~~~nt~~ 193 (301)
T PRK07259 176 KAAEEAGADGLSLINTLK 193 (301)
T ss_pred HHHHHcCCCEEEEEcccc
Confidence 888999999999977554
|
|
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.5 Score=48.50 Aligned_cols=171 Identities=13% Similarity=0.075 Sum_probs=114.4
Q ss_pred CCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChh-----------HHHHHHHHHHhCCceecC
Q 022982 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVST 88 (289)
Q Consensus 20 KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~ 88 (289)
+++-.++++.+.+++... -...++.+++ .-+|.+-+...||-++-+. .+++-++.++++|..|..
T Consensus 69 ~~~i~~~~~~~~~~i~~~-~d~~~e~~~~---~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~ 144 (524)
T PRK12344 69 HAKLAAFGSTRRAGVSAE-EDPNLQALLD---AGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIF 144 (524)
T ss_pred CcEEEEEeeccccCCCcc-cHHHHHHHHh---CCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 345555555555655321 1223333333 3467788887777654333 345888999999999877
Q ss_pred Cc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 022982 89 GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (289)
Q Consensus 89 Gt-lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~ 167 (289)
+. ++.-+....++.+-++++.+.+.|.+.|-+.|-.--+.+.+-.++|+.++++ +. ..+++.+ ..
T Consensus 145 ~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~-~~--v~i~~H~-HN---------- 210 (524)
T PRK12344 145 DAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAA-PG--VPLGIHA-HN---------- 210 (524)
T ss_pred ccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHh-cC--CeEEEEE-CC----------
Confidence 53 3322334455567788888899999999999999999999999999999885 22 2344432 11
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHH
Q 022982 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 225 (289)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii 225 (289)
|...-+-.....++|||+. ||+- |+=+..||...+.+-..+
T Consensus 211 ---------------D~GlA~ANslaAi~aGa~~--Vd~Tl~GlGERaGNa~lE~lv~~L 253 (524)
T PRK12344 211 ---------------DSGCAVANSLAAVEAGARQ--VQGTINGYGERCGNANLCSIIPNL 253 (524)
T ss_pred ---------------CCChHHHHHHHHHHhCCCE--EEEecccccccccCcCHHHHHHHH
Confidence 2233366777789999996 5765 888888998877665333
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.93 Score=47.49 Aligned_cols=171 Identities=12% Similarity=0.049 Sum_probs=123.0
Q ss_pred CCCceeEe----cCCCCCCCchhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCceec-----CCcHH
Q 022982 23 RFGVTEMR----SPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----TGDWA 92 (289)
Q Consensus 23 ~~GlT~V~----DkGl~~~~g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~-----~Gtlf 92 (289)
++-+-|.+ -+||... .-+-.+-+++.|.++ ||++-..- +|-.-++++.-|+.++++|..+. ++.-
T Consensus 75 nt~lqmL~Rg~N~vGy~~~-~d~vv~~~v~~a~~~Gidv~Rifd---~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp- 149 (596)
T PRK14042 75 NTQLSMLLRGQNLLGYRNY-ADDVVRAFVKLAVNNGVDVFRVFD---ALNDARNLKVAIDAIKSHKKHAQGAICYTTSP- 149 (596)
T ss_pred CCceEEEeccccccccccC-ChHHHHHHHHHHHHcCCCEEEEcc---cCcchHHHHHHHHHHHHcCCEEEEEEEecCCC-
Confidence 45677777 7788666 556667788875555 99988875 67777889999999999998543 3321
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022982 93 EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (289)
Q Consensus 93 E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 172 (289)
...++.+.++.+.+.++|.+.|=|.|-.--+.+.+-.++|+.+++. +. -.++... ...
T Consensus 150 ----~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~-~~--ipi~~H~-Hnt-------------- 207 (596)
T PRK14042 150 ----VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQA-TG--LPVHLHS-HST-------------- 207 (596)
T ss_pred ----CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhh-cC--CEEEEEe-CCC--------------
Confidence 2333466677777888999999999999999999999999999984 22 2244432 111
Q ss_pred cCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 022982 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 173 ~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
...-+-..-..++|||+.|=.=-.|+-...||.-++.+-..++..+.+
T Consensus 208 -----------~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~ 255 (596)
T PRK14042 208 -----------SGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDTPYD 255 (596)
T ss_pred -----------CCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhcCCC
Confidence 222356666789999996544445888888999988877777766643
|
|
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=93.91 E-value=2.3 Score=40.33 Aligned_cols=130 Identities=22% Similarity=0.290 Sum_probs=88.8
Q ss_pred chhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHh-CCc-e--ecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDV-Y--VST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~-~gV-~--v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
.+.++.++++.+.++ |.-+.|.+|-..+.+ .+.+.++.+++ .|+ . +.| |.++ +++++..++
T Consensus 44 s~eei~~~i~~~~~~gv~~V~ltGGEPll~~--~l~~li~~i~~~~gi~~v~itTNG~ll-----------~~~~~~L~~ 110 (334)
T TIGR02666 44 TFEEIERLVRAFVGLGVRKVRLTGGEPLLRK--DLVELVARLAALPGIEDIALTTNGLLL-----------ARHAKDLKE 110 (334)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECccccccC--CHHHHHHHHHhcCCCCeEEEEeCchhH-----------HHHHHHHHH
Confidence 566777777765444 888999999988876 58888888777 455 3 334 5443 345677899
Q ss_pred cCCCEEEecCCccc-----------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 113 VGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 113 lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
.|++.|-||=.+.+ -+.+...+.|+.+++.|+. ++-.+-+..+.
T Consensus 111 ~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~------------------------ 166 (334)
T TIGR02666 111 AGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGV------------------------ 166 (334)
T ss_pred cCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCC------------------------
Confidence 99999999965542 2457778899999999986 55443331100
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+.+++.+.++...+.|+..-.+|--
T Consensus 167 --n~~ei~~l~~~~~~~gv~~~~ie~m 191 (334)
T TIGR02666 167 --NDDEIVDLAEFAKERGVTLRFIELM 191 (334)
T ss_pred --CHHHHHHHHHHHHhcCCeEEEEecc
Confidence 2445556666666889987777754
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=2 Score=43.90 Aligned_cols=156 Identities=11% Similarity=0.099 Sum_probs=109.4
Q ss_pred hHHHHHHHhh-cccccEEEecCccccccChhHHHHHHHHHHhCCceecC--C-cHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022982 41 NVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (289)
Q Consensus 41 ~~~~DlLe~a-g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--G-tlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (289)
.-.+-+++.| .+.||++-..- .+..-++++.-|+.++++|..+.. + |.-- ....+-+.++.+.+.++|.+
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd---~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp---~~t~~y~~~~a~~l~~~Gad 178 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFD---ALNDPRNIQQALRAVKKTGKEAQLCIAYTTSP---VHTLNYYLSLVKELVEMGAD 178 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcc---cCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCC---cCcHHHHHHHHHHHHHcCCC
Confidence 3345556665 55699988875 677888999999999999987542 1 2100 01112366677778899999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHH
Q 022982 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196 (289)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLe 196 (289)
.|=|.|-.--+.+++-.++|+.+++. . .-.++..+ .. |...-+-..-..++
T Consensus 179 ~I~IkDtaG~l~P~~v~~Lv~alk~~-~--~~pi~~H~-Hn-------------------------t~GlA~An~laAie 229 (468)
T PRK12581 179 SICIKDMAGILTPKAAKELVSGIKAM-T--NLPLIVHT-HA-------------------------TSGISQMTYLAAVE 229 (468)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHhc-c--CCeEEEEe-CC-------------------------CCccHHHHHHHHHH
Confidence 99999999999999999999999873 1 23355533 11 12233667777899
Q ss_pred ccCcEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 022982 197 AGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 197 AGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
|||+.|=.=-.|+-...||.-++.+-..++..+.+
T Consensus 230 AGad~vD~ai~g~g~gagN~~tE~lv~~L~~~g~~ 264 (468)
T PRK12581 230 AGADRIDTALSPFSEGTSQPATESMYLALKEAGYD 264 (468)
T ss_pred cCCCEEEeeccccCCCcCChhHHHHHHHHHhcCCC
Confidence 99996533334888888999988877777665543
|
|
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.9 Score=41.22 Aligned_cols=97 Identities=26% Similarity=0.369 Sum_probs=68.0
Q ss_pred chhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHHcC
Q 022982 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (289)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v--~~-GtlfE~a~~qg~~~~~~yl~~~k~lG 114 (289)
....+.++++.+.+. +..+-|++|--.+.| .+.+.++.++++|+.+ .| |+++ -++.++.+++.|
T Consensus 38 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~--~~~~ii~~~~~~g~~~~l~TNG~ll----------~~e~~~~L~~~g 105 (358)
T TIGR02109 38 TTEEWTDVLTQAAELGVLQLHFSGGEPLARP--DLVELVAHARRLGLYTNLITSGVGL----------TEARLDALADAG 105 (358)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeCccccccc--cHHHHHHHHHHcCCeEEEEeCCccC----------CHHHHHHHHhCC
Confidence 455677777665443 567889999998876 4889999999999854 34 6543 145677788899
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHcCCccc
Q 022982 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~G~~v~ 147 (289)
++.|.||=...+ . +.+.-.+.|+.+++.|+.+.
T Consensus 106 ~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~ 149 (358)
T TIGR02109 106 LDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLT 149 (358)
T ss_pred CCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceE
Confidence 999999965542 1 12333567788888887643
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.33 Score=45.58 Aligned_cols=86 Identities=21% Similarity=0.316 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
..-.+..++.|.++|-|-|| ++..+.|+.+.+.|..|..++|..-. + +..++.+....+- ...
T Consensus 94 ~~a~r~~~~aGa~aVkiEd~------~~~~~~I~al~~agipV~gHiGL~pq-~------~~~~gg~~~~grt----~~~ 156 (254)
T cd06557 94 RNAARLMKEAGADAVKLEGG------AEVAETIRALVDAGIPVMGHIGLTPQ-S------VNQLGGYKVQGKT----EEE 156 (254)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHcCCCeeccccccce-e------eeccCCceeccCC----HHH
Confidence 33456677899999999998 47889999999999999988888422 1 1111111110000 112
Q ss_pred HHHHHHHHHHHHHccCcEEEEec
Q 022982 184 VDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.+++|+++++..+|||+.|.+|+
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~ 179 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLEC 179 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC
Confidence 68999999999999999999997
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.93 Score=42.65 Aligned_cols=143 Identities=18% Similarity=0.191 Sum_probs=86.3
Q ss_pred hhcccccEEEecCccccccChhHHHHHHHHHHhCCc--eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-Ccc
Q 022982 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GSL 125 (289)
Q Consensus 49 ~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gti 125 (289)
.+.+|+|++|+|-+...=+ +.|++ +-+.|. .+..|.+.-.. .+..-++++++-|-+-|=+=. |+-
T Consensus 94 ~~~e~vdilqIgs~~~~n~--~LL~~----va~tgkPVilk~G~~~t~~------e~~~A~e~i~~~Gn~~i~L~eRg~~ 161 (250)
T PRK13397 94 EAYDYLDVIQVGARNMQNF--EFLKT----LSHIDKPILFKRGLMATIE------EYLGALSYLQDTGKSNIILCERGVR 161 (250)
T ss_pred HHHhcCCEEEECcccccCH--HHHHH----HHccCCeEEEeCCCCCCHH------HHHHHHHHHHHcCCCeEEEEccccC
Confidence 3445899999997654443 34433 223455 44567322111 122223344566775555555 766
Q ss_pred cCChhHH----HHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 EIPEETL----LRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 ~i~~~~r----~~lI~~~~~-~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
.-|...+ ++.|..+++ .++. +.+ +.| .+.+. .+.+...++..+.+||+
T Consensus 162 ~Y~~~~~n~~dl~ai~~lk~~~~lP----Viv--d~S--Hs~G~-------------------r~~v~~~a~AAvA~GAd 214 (250)
T PRK13397 162 GYDVETRNMLDIMAVPIIQQKTDLP----IIV--DVS--HSTGR-------------------RDLLLPAAKIAKAVGAN 214 (250)
T ss_pred CCCCccccccCHHHHHHHHHHhCCC----eEE--CCC--CCCcc-------------------cchHHHHHHHHHHhCCC
Confidence 6665544 466777776 2322 112 111 11122 23346778899999999
Q ss_pred EEEEecc-----ccccCCCCccHHHHHHHHhccCC
Q 022982 201 MIMIDSD-----DVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 201 ~ViiEar-----GI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
-+|||-- -++|....+..+.++++++++..
T Consensus 215 Gl~IE~H~~P~~A~sD~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 215 GIMMEVHPDPDHALSDAAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred EEEEEecCCcccccCchhhhCCHHHHHHHHHHhcc
Confidence 9999983 69999999999999999987753
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=1.6 Score=45.72 Aligned_cols=151 Identities=11% Similarity=0.097 Sum_probs=107.5
Q ss_pred HHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCcee-----cCCcHHHHHHHhCCchHHHHHHHHHHcCC
Q 022982 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-----STGDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (289)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v-----~~GtlfE~a~~qg~~~~~~yl~~~k~lGF 115 (289)
..+..++.|.+. ||.+-+.-. +-+-+.++.-|+.++++|..+ |+++- + ..++.+.++.+.+.+.|.
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~---lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p-~----~~~~~~~~~a~~l~~~Ga 169 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDA---MNDPRNLETALKAVRKVGAHAQGTLSYTTSP-V----HTLQTWVDLAKQLEDMGV 169 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeee---CCcHHHHHHHHHHHHHcCCeEEEEEEEeeCC-c----cCHHHHHHHHHHHHHcCC
Confidence 456667766554 999988854 334467999999999999853 23321 1 123467778888889999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHH
Q 022982 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195 (289)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dL 195 (289)
+.|=|.|-.--+.+.+-.++|+.+++. +. -.+++.+ .. |...-+......+
T Consensus 170 d~i~i~Dt~G~l~P~~~~~lv~~lk~~-~~--~pi~~H~-Hn-------------------------t~GlA~An~laAi 220 (593)
T PRK14040 170 DSLCIKDMAGLLKPYAAYELVSRIKKR-VD--VPLHLHC-HA-------------------------TTGLSTATLLKAI 220 (593)
T ss_pred CEEEECCCCCCcCHHHHHHHHHHHHHh-cC--CeEEEEE-CC-------------------------CCchHHHHHHHHH
Confidence 999999999999999999999999984 11 2345533 11 1233366777789
Q ss_pred HccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 196 EAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 196 eAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
+|||+.|=.=-.|+=...||...+.+-..++..+
T Consensus 221 eAGa~~vD~ai~glG~~~Gn~~le~vv~~L~~~~ 254 (593)
T PRK14040 221 EAGIDGVDTAISSMSMTYGHSATETLVATLEGTE 254 (593)
T ss_pred HcCCCEEEeccccccccccchhHHHHHHHHHhcC
Confidence 9999965443358888889998887766666554
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.98 Score=45.97 Aligned_cols=146 Identities=14% Similarity=0.101 Sum_probs=102.9
Q ss_pred hcccccEEEecCccccccChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 022982 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (289)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G---tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (289)
+..-||.+-+....+- .+.+++-|+.++++|..+... |+- - ...++.+-++.+.+.+.|.+.|=|.|-.--
T Consensus 105 ~~~Gvd~irif~~lnd---~~n~~~~i~~ak~~G~~v~~~i~~t~~-p--~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~ 178 (467)
T PRK14041 105 AEYGLDIIRIFDALND---IRNLEKSIEVAKKHGAHVQGAISYTVS-P--VHTLEYYLEFARELVDMGVDSICIKDMAGL 178 (467)
T ss_pred HHCCcCEEEEEEeCCH---HHHHHHHHHHHHHCCCEEEEEEEeccC-C--CCCHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 4446999998876665 457999999999999977621 110 0 112245667777788899999999999999
Q ss_pred CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 127 IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 127 i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
+.+.+-.++|+.+++. +.+ .++..+ ... ...-+-..-..++|||+.|=.=-
T Consensus 179 l~P~~v~~Lv~~lk~~-~~v--pI~~H~-Hnt-------------------------~GlA~AN~laAieaGad~vD~sv 229 (467)
T PRK14041 179 LTPKRAYELVKALKKK-FGV--PVEVHS-HCT-------------------------TGLASLAYLAAVEAGADMFDTAI 229 (467)
T ss_pred cCHHHHHHHHHHHHHh-cCC--ceEEEe-cCC-------------------------CCcHHHHHHHHHHhCCCEEEeec
Confidence 9999999999999984 221 234422 111 22236667778999999643333
Q ss_pred cccccCCCCccHHHHHHHHhccCC
Q 022982 207 DDVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 207 rGI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
.|+-...||..++.+-..++..+.
T Consensus 230 ~~~g~gagN~atE~lv~~L~~~g~ 253 (467)
T PRK14041 230 SPFSMGTSQPPFESMYYAFRENGK 253 (467)
T ss_pred cccCCCCCChhHHHHHHHHHhcCC
Confidence 488888899988887777766653
|
|
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.56 Score=46.94 Aligned_cols=124 Identities=11% Similarity=0.152 Sum_probs=85.6
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (289)
-|+-+=||+||..+.+.+.|++.++.++++ ++. + -.|+.+.-+|+. =++.++.+++.||+.|.|---|.
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~--~--~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vL 189 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLA--P--DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVR 189 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHH
Confidence 488999999999999999999999999885 221 1 123333233333 36889999999999998765554
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
.-+.++-.+.|+.+++.||.... +..-++. |. +|.+.+.+.++..++.|.+
T Consensus 190 k~lgR~~~~~~~~~~i~~l~~~g~~~v~-~DlI~Gl----------------Pg-------qT~e~~~~~l~~~~~l~~~ 245 (449)
T PRK09058 190 RRAGRKDDREEVLARLEELVARDRAAVV-CDLIFGL----------------PG-------QTPEIWQQDLAIVRDLGLD 245 (449)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCCcEE-EEEEeeC----------------CC-------CCHHHHHHHHHHHHhcCCC
Confidence 23455666778888888865222 2222221 11 1478888999999999999
Q ss_pred EEEE
Q 022982 201 MIMI 204 (289)
Q Consensus 201 ~Vii 204 (289)
.|-+
T Consensus 246 ~is~ 249 (449)
T PRK09058 246 GVDL 249 (449)
T ss_pred EEEE
Confidence 7754
|
|
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.72 Score=42.17 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
+-++++.+.+..+++||+.|++ ||.||.++.- ...+.+|.+
T Consensus 185 ~dq~~~~~~~~ai~~Gad~iVv-GR~I~~a~dP--~~~a~~i~~ 225 (230)
T PRK00230 185 GDQKRVMTPAQAIAAGSDYIVV-GRPITQAADP--AAAYEAILA 225 (230)
T ss_pred chHHHHhCHHHHHHcCCCEEEE-CCcccCCCCH--HHHHHHHHH
Confidence 5677888899999999998866 8999988754 334455544
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.42 Score=46.45 Aligned_cols=115 Identities=10% Similarity=0.035 Sum_probs=78.6
Q ss_pred hHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (289)
..|-.-.+.+|-. |+=....++.+.|++.|+-+++. .-.++.=+++ .......+++.++.|.+.+...|.
T Consensus 17 ~~LaaAVS~AGgL------G~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~---~~~~~~~~~~~l~vi~e~~v~~V~ 87 (320)
T cd04743 17 AEFAVAVAEGGGL------PFIALALMRGEQVKALLEETAELLGDKPWGVGIL---GFVDTELRAAQLAVVRAIKPTFAL 87 (320)
T ss_pred HHHHHHHHhCCcc------ccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEe---ccCCCcchHHHHHHHHhcCCcEEE
Confidence 3555556666632 33334567788899999999884 3333321220 001112478999999999999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
++-|. |. . ++++++.|.+|.+.++- ++++++.+++||
T Consensus 88 ~~~G~---P~----~-~~~lk~~Gi~v~~~v~s-----------------------------------~~~A~~a~~~Ga 124 (320)
T cd04743 88 IAGGR---PD----Q-ARALEAIGISTYLHVPS-----------------------------------PGLLKQFLENGA 124 (320)
T ss_pred EcCCC---hH----H-HHHHHHCCCEEEEEeCC-----------------------------------HHHHHHHHHcCC
Confidence 98663 32 1 58889999988764432 567788999999
Q ss_pred cEEEEecc
Q 022982 200 DMIMIDSD 207 (289)
Q Consensus 200 ~~ViiEar 207 (289)
|.||+|+.
T Consensus 125 D~vVaqG~ 132 (320)
T cd04743 125 RKFIFEGR 132 (320)
T ss_pred CEEEEecC
Confidence 99999997
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.73 Score=46.55 Aligned_cols=96 Identities=22% Similarity=0.339 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
-++++++.+.+.|++.|-|.+..-++. .....|+.+++.|+.| ++.+-... + |.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~--n~~~~v~~ak~~G~~v--~~~i~~t~---~------------p~------- 150 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVR--NLETAVKATKKAGGHA--QVAISYTT---S------------PV------- 150 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHH--HHHHHHHHHHHcCCeE--EEEEEeec---C------------CC-------
Confidence 578999999999999999999877775 3567899999999876 44442110 0 10
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
-+++.+++.+++..++||+.|- |.|..|-..+..+.++++.+
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~-----i~Dt~G~l~P~~v~~lv~al 192 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSIC-----IKDMAGILTPYVAYELVKRI 192 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 1588889999999999999764 67888888888887777654
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.73 Score=48.16 Aligned_cols=96 Identities=16% Similarity=0.229 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.++.+++.+.+.|.+.|-|.|..-++ +.-...|+.+++.|+.+...+.... + +.
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~lnd~--~~~~~ai~~ak~~G~~~~~~i~yt~--~---p~------------------- 151 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAMNDP--RNLETALKAVRKVGAHAQGTLSYTT--S---PV------------------- 151 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeCCcH--HHHHHHHHHHHHcCCeEEEEEEEee--C---Cc-------------------
Confidence 68999999999999999999977776 3455789999999997654443321 1 11
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.|++.+++.++.-.++||+.|- |+|..|-..+..+.++++.+
T Consensus 152 ~~~~~~~~~a~~l~~~Gad~i~-----i~Dt~G~l~P~~~~~lv~~l 193 (593)
T PRK14040 152 HTLQTWVDLAKQLEDMGVDSLC-----IKDMAGLLKPYAAYELVSRI 193 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHH
Confidence 1477888999999999999764 78999999999988888755
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.76 Score=43.89 Aligned_cols=123 Identities=19% Similarity=0.246 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHH
Q 022982 71 FIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYV 136 (289)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI 136 (289)
.+..-=++++..+|+|.- .||-+ +..+.+.++...+.|...|-|-|.+. -+|.++..+-|
T Consensus 61 ~~~~~~~I~~~~~iPviaD~d~GyG~------~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI 134 (285)
T TIGR02317 61 VAEDARRITRVTDLPLLVDADTGFGE------AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKI 134 (285)
T ss_pred HHHHHHHHHhccCCCEEEECCCCCCC------HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHH
Confidence 333334456667887774 24543 22556677788899999999998653 36888888888
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCc
Q 022982 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSL 216 (289)
Q Consensus 137 ~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~ 216 (289)
+.+++.-- -++|-+ ... -|. + .....++.|+++++..+||||.|.+|+- -
T Consensus 135 ~Aa~~a~~--~~d~~I---iAR----TDa-~------------~~~g~deAI~Ra~ay~~AGAD~vfi~g~--------~ 184 (285)
T TIGR02317 135 AAAVDAKR--DEDFVI---IAR----TDA-R------------AVEGLDAAIERAKAYVEAGADMIFPEAL--------T 184 (285)
T ss_pred HHHHHhcc--CCCEEE---EEE----cCc-c------------cccCHHHHHHHHHHHHHcCCCEEEeCCC--------C
Confidence 88887421 133433 111 111 0 0124789999999999999999999972 1
Q ss_pred cHHHHHHHHhccC
Q 022982 217 RADIIAKVIGRLG 229 (289)
Q Consensus 217 r~d~v~~ii~~l~ 229 (289)
..+.++++.+.++
T Consensus 185 ~~e~i~~~~~~i~ 197 (285)
T TIGR02317 185 SLEEFRQFAKAVK 197 (285)
T ss_pred CHHHHHHHHHhcC
Confidence 3566777777765
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.34 Score=47.20 Aligned_cols=179 Identities=20% Similarity=0.252 Sum_probs=97.0
Q ss_pred cccccEEEecCccccccChhHHHHHHHHHHhCCceecC--------C-cHHHHHHHhCCc----hHHHHHHHHHHcCCCE
Q 022982 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--------G-DWAEHLIRNGPS----AFKEYVEDCKQVGFDT 117 (289)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--------G-tlfE~a~~qg~~----~~~~yl~~~k~lGF~~ 117 (289)
=+|||.+ .-|+-+++..+. ..-|+.||+|||+|.+ + .+++.++.++++ -+++.++.|+.+|||.
T Consensus 30 W~yvD~f-vywsh~~~~iPp--~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDG 106 (339)
T cd06547 30 WQYVDTF-VYFSHSAVTIPP--ADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDG 106 (339)
T ss_pred hhhhhee-ecccCccccCCC--cHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCc
Confidence 3688887 445555544421 4678899999999873 2 256667765221 2788999999999999
Q ss_pred EEecCCcccCChhHHHHHH---HHHHHcCCcccceeeeec--CC---------CCCCCcccccc----ccccccCCCCcc
Q 022982 118 IELNVGSLEIPEETLLRYV---RLVKSAGLKAKPKFAVMF--NK---------SDIPSDRDRAF----GAYVARAPRSTE 179 (289)
Q Consensus 118 IEISdGti~i~~~~r~~lI---~~~~~~G~~v~~E~g~k~--~~---------~evg~~~d~~~----~~~~~~~~~~~~ 179 (289)
+=|+-=+..-+.+++.+++ +.+++..=+-.|.+-+.- .. .+.. .++..| ..+..-+.|...
T Consensus 107 w~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln-~~N~~ff~~~D~~FlNY~W~~~ 185 (339)
T cd06547 107 WLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELN-SKNKPFFDVCDGIFLNYWWTEE 185 (339)
T ss_pred eEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhh-HHHHHHHhhhcceeEecCCCcc
Confidence 8887766643444444444 444443111111111110 00 0000 011110 012345667544
Q ss_pred ccccHHHHHHHH---HHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 022982 180 YVEDVDLLIRRA---ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (289)
Q Consensus 180 ~~~~~~~~I~~~---~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP 238 (289)
..+...+..+.+ ..||=||.|. .+||.+ ..+++.++..-..+.+.++.-=|| ||
T Consensus 186 ~l~~s~~~a~~~g~~~~dvy~GiDv---~grg~~-~~~~~~~~~~~~~~~~~~~Svalf-ap 242 (339)
T cd06547 186 SLERSVQLAEGLGRSPYDVYVGVDV---WGRGTK-GGGGWNSDKALDEIKKAGLSVALF-AP 242 (339)
T ss_pred hHHHHHHHHHHcCCCHhHEEEEEEE---EcCCcc-cCCCCchhhhhhhhcccCeEEEEE-cC
Confidence 333332222222 3466677664 478754 356666565555666677776777 66
|
The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.4 Score=41.95 Aligned_cols=150 Identities=17% Similarity=0.230 Sum_probs=104.5
Q ss_pred chhHHHHHHHh-hcccccEEEecCcccc---------------c---cChhHHHHHHHHHHhCCceecCC--cHHHHHHH
Q 022982 39 SHNVLEDIFES-MGQFVDGLKFSGGSHS---------------L---MPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIR 97 (289)
Q Consensus 39 g~~~~~DlLe~-ag~yID~lKfg~GTs~---------------l---~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~ 97 (289)
++..+.+++.. --.-.|++=||+=.|= | +..+..-+.++..++.++.+.-+ |++--.+.
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~ 108 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFN 108 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHH
Confidence 44566666665 4455899999986551 1 12233446677777777766555 78888888
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
+| +++|++.|++.|+|.+=| .++|.|+..++...++++|+..++=+-..
T Consensus 109 ~G---ie~F~~~~~~~GvdGliv----pDLP~ee~~~~~~~~~~~gi~~I~lvaPt------------------------ 157 (265)
T COG0159 109 YG---IEKFLRRAKEAGVDGLLV----PDLPPEESDELLKAAEKHGIDPIFLVAPT------------------------ 157 (265)
T ss_pred hh---HHHHHHHHHHcCCCEEEe----CCCChHHHHHHHHHHHHcCCcEEEEeCCC------------------------
Confidence 85 999999999999999876 57999999999999999988877643331
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc-ccccCCCCccHHHHHHHHhcc
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-GI~d~~G~~r~d~v~~ii~~l 228 (289)
+++++++++ .++..-+|-.=++ |++........+ +.++++++
T Consensus 158 -----t~~~rl~~i---~~~a~GFiY~vs~~GvTG~~~~~~~~-~~~~v~~v 200 (265)
T COG0159 158 -----TPDERLKKI---AEAASGFIYYVSRMGVTGARNPVSAD-VKELVKRV 200 (265)
T ss_pred -----CCHHHHHHH---HHhCCCcEEEEecccccCCCcccchh-HHHHHHHH
Confidence 234444444 4666677777788 888877765555 55555443
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=93.25 E-value=1.5 Score=42.71 Aligned_cols=141 Identities=19% Similarity=0.229 Sum_probs=92.5
Q ss_pred hHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
..+-+.|..+| ||.+=+||-++.=.+ .+.++.+++.+ ..+. +| .+ ...+-++.+.+.|.+.|
T Consensus 26 ~~ia~~L~~~G--v~~IEvG~p~~~~~~----~e~i~~i~~~~~~~~i~--~~-----~r---~~~~di~~a~~~g~~~i 89 (365)
T TIGR02660 26 LAIARALDEAG--VDELEVGIPAMGEEE----RAVIRAIVALGLPARLM--AW-----CR---ARDADIEAAARCGVDAV 89 (365)
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCHHH----HHHHHHHHHcCCCcEEE--EE-----cC---CCHHHHHHHHcCCcCEE
Confidence 35566778888 888999976644222 33344444432 2222 11 22 22556788889999999
Q ss_pred EecCCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 119 ELNVGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 119 EISdGti~--------i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
-+...+-+ .+.++ -.+.|+.+++.|++| +|+..+. . -.|++.
T Consensus 90 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v--~~~~ed~---------~---------------r~~~~~ 143 (365)
T TIGR02660 90 HISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFV--SVGGEDA---------S---------------RADPDF 143 (365)
T ss_pred EEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEE--EEeecCC---------C---------------CCCHHH
Confidence 98876533 22222 337899999999874 3443221 0 015888
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+++.++...++||+.| .|+|..|-..+..+.++++.+
T Consensus 144 l~~~~~~~~~~Ga~~i-----~l~DT~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 144 LVELAEVAAEAGADRF-----RFADTVGILDPFSTYELVRAL 180 (365)
T ss_pred HHHHHHHHHHcCcCEE-----EEcccCCCCCHHHHHHHHHHH
Confidence 8999999999999976 478999999988888887654
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=93.24 E-value=1.3 Score=42.01 Aligned_cols=101 Identities=20% Similarity=0.316 Sum_probs=72.5
Q ss_pred chhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhC----CceecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~----gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
.+.++.++++.+.++ +.-+.|.+|--.+.+ .+.+.++.++++ .|.+.| |++ ++++++.+++
T Consensus 50 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~--~l~~li~~i~~~~~~~~i~itTNG~l-----------l~~~~~~L~~ 116 (331)
T PRK00164 50 SLEEIERLVRAFVALGVRKVRLTGGEPLLRK--DLEDIIAALAALPGIRDLALTTNGYL-----------LARRAAALKD 116 (331)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcCcc--CHHHHHHHHHhcCCCceEEEEcCchh-----------HHHHHHHHHH
Confidence 556777777766555 788999999988775 588999999887 234455 543 3345677788
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCC-cccceeee
Q 022982 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL-KAKPKFAV 152 (289)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~-~v~~E~g~ 152 (289)
.|.+.|-||=.+.+ -+.+...+.|+.+++.|+ .|+-.+-+
T Consensus 117 agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 117 AGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred cCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 99999999955432 346777889999999998 55544433
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=3.9 Score=38.56 Aligned_cols=173 Identities=18% Similarity=0.170 Sum_probs=108.0
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHh-CCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---- 125 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~-~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---- 125 (289)
-+..+-|..|+...++.+.+.+.++..++ .++.+. +|. .-++.++..++.|++.|-++--+.
T Consensus 86 g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l~~Lk~aG~~~v~~glEs~~~~~ 154 (323)
T PRK07094 86 GYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGE-----------RSYEEYKAWKEAGADRYLLRHETADKEL 154 (323)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCC-----------CCHHHHHHHHHcCCCEEEeccccCCHHH
Confidence 46778888887666777889999999998 477543 332 336788899999999987765444
Q ss_pred ------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 126 ------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
..+.+++.+.|+.+++.|+.|.+-+-+ +.. + ++.+++.+.++...+.++
T Consensus 155 ~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~ii--Glp----g-------------------et~ed~~~~l~~l~~l~~ 209 (323)
T PRK07094 155 YAKLHPGMSFENRIACLKDLKELGYEVGSGFMV--GLP----G-------------------QTLEDLADDILFLKELDL 209 (323)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCeecceEEE--ECC----C-------------------CCHHHHHHHHHHHHhCCC
Confidence 477899999999999999987654433 110 0 136677777777778888
Q ss_pred cEEEEecc------ccccCCCCccHHHHHHHHh--ccCCCc--e----EEecCCchhHHHHHHHhCCCcccc-cCCCCc
Q 022982 200 DMIMIDSD------DVCKHADSLRADIIAKVIG--RLGLEK--T----MFEATNPRTSEWFIRRYGPKVNLF-VDHSQV 263 (289)
Q Consensus 200 ~~ViiEar------GI~d~~G~~r~d~v~~ii~--~l~~ek--l----ifEAP~k~qQ~~~I~~fG~~VNLg-I~~~eV 263 (289)
+.|-+-.= -+++.. ....+..-++++ ++=+.+ | =|+.=.|.+| ......|.|+=.+ +.|.++
T Consensus 210 ~~v~~~~~~P~pgTpl~~~~-~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~-~~~l~~Gan~~~~~~~~~~~ 286 (323)
T PRK07094 210 DMIGIGPFIPHPDTPLKDEK-GGSLELTLKVLALLRLLLPDANIPATTALGTLNPDGR-EKGLKAGANVVMPNLTPGEY 286 (323)
T ss_pred CeeeeeccccCCCCCcccCC-CCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchhH-HHHHHcCCceecCCCCchhh
Confidence 87765431 244433 223333333331 111111 2 1222234433 3666777666555 776654
|
|
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=2.1 Score=41.37 Aligned_cols=129 Identities=25% Similarity=0.302 Sum_probs=85.8
Q ss_pred chhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHHcC
Q 022982 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (289)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v--~~-GtlfE~a~~qg~~~~~~yl~~~k~lG 114 (289)
....+.++++.+.++ +-.+-|.+|--.+.| .+.+.++.+++.|+.+ .| |+++ -++.++..++.|
T Consensus 47 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~--~~~~il~~~~~~g~~~~i~TNG~ll----------~~~~~~~L~~~g 114 (378)
T PRK05301 47 STEEWIRVLREARALGALQLHFSGGEPLLRK--DLEELVAHARELGLYTNLITSGVGL----------TEARLAALKDAG 114 (378)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCccCCch--hHHHHHHHHHHcCCcEEEECCCccC----------CHHHHHHHHHcC
Confidence 455677777765443 456788889988877 4889999999999844 45 5542 134556678889
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
++.|.||=...+ . +.+.-.+.|+.+++.|++|.--+.+.. . +
T Consensus 115 ~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~--------~-------------------N 167 (378)
T PRK05301 115 LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHR--------H-------------------N 167 (378)
T ss_pred CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeec--------C-------------------C
Confidence 999999965541 1 355667788899999887543333310 0 2
Q ss_pred HHHHHHHHHHHHHccCcEEEEec
Q 022982 184 VDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.+++.+.++-..+.|++.|.+..
T Consensus 168 ~~~i~~~~~~~~~lgv~~i~~~~ 190 (378)
T PRK05301 168 IDQIPRIIELAVELGADRLELAN 190 (378)
T ss_pred HHHHHHHHHHHHHcCCCEEEEec
Confidence 44555555555678999987643
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.8 Score=42.57 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=64.2
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHH
Q 022982 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (289)
+..-+.|.++|-|-|+. +..+.|+.+++.++.|.-..+.... +-.-...++.++. . ..+.++.
T Consensus 96 ~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~i~ViaRtd~~pq-~~~~~gg~~~~~~------~----~~~~~~a 158 (240)
T cd06556 96 KTFMRAGAAGVKIEGGE------WHIETLQMLTAAAVPVIAHTGLTPQ-SVNTSGGDEGQYR------G----DEAGEQL 158 (240)
T ss_pred HHHHHcCCcEEEEcCcH------HHHHHHHHHHHcCCeEEEEeCCchh-hhhccCCceeecc------C----HHHHHHH
Confidence 33445999999999984 4566788889998776665554210 0000011111110 0 2247899
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCC
Q 022982 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
|++++...+|||+.|.+|+- ..+++.+|.+.++.
T Consensus 159 i~Ra~ay~~AGAd~i~~e~~---------~~e~~~~i~~~~~~ 192 (240)
T cd06556 159 IADALAYAPAGADLIVMECV---------PVELAKQITEALAI 192 (240)
T ss_pred HHHHHHHHHcCCCEEEEcCC---------CHHHHHHHHHhCCC
Confidence 99999999999999999963 46778888877663
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.79 Score=47.06 Aligned_cols=97 Identities=21% Similarity=0.302 Sum_probs=76.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+-++.+++.+.+.|+|.+-|.|..-++ +.....|+.+++.|..+...+...- + +
T Consensus 97 dvv~~fv~~a~~~Gidi~RIfd~lndv--~nl~~ai~~vk~ag~~~~~~i~yt~--s-------p--------------- 150 (499)
T PRK12330 97 EVVDRFVEKSAENGMDVFRVFDALNDP--RNLEHAMKAVKKVGKHAQGTICYTV--S-------P--------------- 150 (499)
T ss_pred hHHHHHHHHHHHcCCCEEEEEecCChH--HHHHHHHHHHHHhCCeEEEEEEEec--C-------C---------------
Confidence 368899999999999999999999988 5556789999999987766554411 1 0
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.-|++.+++.+++-.++||+.|- |.|..|-..+..+.++++.+
T Consensus 151 ~~t~e~~~~~a~~l~~~Gad~I~-----IkDtaGll~P~~~~~LV~~L 193 (499)
T PRK12330 151 IHTVEGFVEQAKRLLDMGADSIC-----IKDMAALLKPQPAYDIVKGI 193 (499)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE-----eCCCccCCCHHHHHHHHHHH
Confidence 11588899999999999999774 67788888888777777654
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.95 E-value=1.4 Score=39.11 Aligned_cols=96 Identities=15% Similarity=0.270 Sum_probs=63.3
Q ss_pred hhHHHHHHHhhcc-cccEEEec------------CccccccChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCch
Q 022982 40 HNVLEDIFESMGQ-FVDGLKFS------------GGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSA 102 (289)
Q Consensus 40 ~~~~~DlLe~ag~-yID~lKfg------------~GTs~l~p~~~l~eKI~l~~~~-gV~v~~---GtlfE~a~~qg~~~ 102 (289)
+..+.+.-+.+-+ ..|.+++- +|++.+-..+.+.+.++-.++. ++.+.- .+|-+. ..
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~------~~ 139 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE------EE 139 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc------hH
Confidence 4555555555444 68999885 5666677778899999988764 223322 234221 26
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHH
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKS 141 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~ 141 (289)
..++++.+.+.|++.|.|+.++... ...-..++++++++
T Consensus 140 ~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~ 180 (231)
T cd02801 140 TLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKE 180 (231)
T ss_pred HHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHh
Confidence 7888899999999999999987532 11223467777776
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=92.81 E-value=1.3 Score=42.46 Aligned_cols=100 Identities=21% Similarity=0.322 Sum_probs=65.3
Q ss_pred ccChhHHHHHHHHHHhC-----Ccee--cCC---cH------------HHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 022982 66 LMPKPFIEEVVKRAHQH-----DVYV--STG---DW------------AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (289)
Q Consensus 66 l~p~~~l~eKI~l~~~~-----gV~v--~~G---tl------------fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (289)
-++.+.+++.|+-.+++ ||.+ ... .. .+.++..+. .++++++.+-+.+.+.|-.+-|
T Consensus 44 ~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~G 122 (330)
T PF03060_consen 44 GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGV-PFEEQLDVALEAKPDVVSFGFG 122 (330)
T ss_dssp TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT--SHHHHHHHHHHS--SEEEEESS
T ss_pred ccChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCc-ccccccccccccceEEEEeecc
Confidence 34556677777776665 4422 222 12 445555552 2778888888889999999988
Q ss_pred cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEE
Q 022982 124 SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 203 (289)
Q Consensus 124 ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vi 203 (289)
.- . .++|+++++.|.+|.+-++- ++.++..+++|||.|+
T Consensus 123 ~p---~---~~~i~~l~~~gi~v~~~v~s-----------------------------------~~~A~~a~~~G~D~iv 161 (330)
T PF03060_consen 123 LP---P---PEVIERLHAAGIKVIPQVTS-----------------------------------VREARKAAKAGADAIV 161 (330)
T ss_dssp SC-------HHHHHHHHHTT-EEEEEESS-----------------------------------HHHHHHHHHTT-SEEE
T ss_pred cc---h---HHHHHHHHHcCCccccccCC-----------------------------------HHHHHHhhhcCCCEEE
Confidence 53 2 35889999999887764432 6778889999999999
Q ss_pred Eecc
Q 022982 204 IDSD 207 (289)
Q Consensus 204 iEar 207 (289)
+|+-
T Consensus 162 ~qG~ 165 (330)
T PF03060_consen 162 AQGP 165 (330)
T ss_dssp EE-T
T ss_pred Eecc
Confidence 9985
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=92.75 E-value=3.1 Score=39.25 Aligned_cols=80 Identities=13% Similarity=0.174 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHcC-CCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVG-FDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lG-F~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.+.++++++-+.| .+.|=+.-. +..|+.++|.++++.+.+. +...+-+-.+ |+
T Consensus 21 ~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~---~~~~~pvi~g---v~---------------- 78 (290)
T TIGR00683 21 KGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDE---AKDQIALIAQ---VG---------------- 78 (290)
T ss_pred HHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHH---hCCCCcEEEe---cC----------------
Confidence 36888999999999 999888755 3579999999999998884 1111111111 11
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
..+.++.++.++..-++|||.|++=.
T Consensus 79 ----~~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 79 ----SVNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred ----CCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 01377889999999999999999944
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=1.8 Score=40.60 Aligned_cols=143 Identities=11% Similarity=0.025 Sum_probs=91.9
Q ss_pred chHHHHHHHHHH-cCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCccccccccccccCC
Q 022982 101 SAFKEYVEDCKQ-VGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 101 ~~~~~yl~~~k~-lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~evg~~~d~~~~~~~~~~~ 175 (289)
+.++++++++.+ .|.+.|=+.-. +..|+.++|+++++.+.+. ..-+.+ ...||
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~-------~~~~~~viagvg--------------- 81 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEE-------AKGKVKLIAQVG--------------- 81 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHH-------hCCCCCEEecCC---------------
Confidence 368899999999 99999988665 3579999999999998884 211110 00111
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCchh---HHHHHHHhCC
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRT---SEWFIRRYGP 252 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~q---Q~~~I~~fG~ 252 (289)
..+..+.|++++..-++||+.|++=.--.+...-+---+-..++++..++.=+++-.|.... -..++.++-.
T Consensus 82 -----~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 82 -----SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred -----CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 11478889999999999999999987544333211122334556667777777887774322 3445555543
Q ss_pred Cccc-c--cCCCCchhhhhhh
Q 022982 253 KVNL-F--VDHSQVMDLECLR 270 (289)
Q Consensus 253 ~VNL-g--I~~~eVl~LE~LR 270 (289)
.=|+ | -...|+..+..++
T Consensus 157 ~pnvvgiK~s~~d~~~~~~~~ 177 (293)
T PRK04147 157 LPKVIGVKQTAGDLYQLERIR 177 (293)
T ss_pred CCCEEEEEeCCCCHHHHHHHH
Confidence 2344 3 3445565555554
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=92.51 E-value=1 Score=46.07 Aligned_cols=142 Identities=16% Similarity=0.150 Sum_probs=101.1
Q ss_pred ccEEEecCccccccChh-----------HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022982 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (289)
++.+-+...+|-++-+. .+++-++.++++|..|..+ +|.+...+++.+.++++.+.+.|.+.|-+.|
T Consensus 93 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~--~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 170 (513)
T PRK00915 93 APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFS--AEDATRTDLDFLCRVVEAAIDAGATTINIPD 170 (513)
T ss_pred CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 45566666666554322 2478899999999987654 2333344556788888999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
-.--+.+++-.++|+.++++ +.- ...+++.+ . .|....+-.+...++|||+
T Consensus 171 TvG~~~P~~~~~~i~~l~~~-~~~~~~v~l~~H~-H-------------------------ND~GlAvANslaAv~aGa~ 223 (513)
T PRK00915 171 TVGYTTPEEFGELIKTLRER-VPNIDKAIISVHC-H-------------------------NDLGLAVANSLAAVEAGAR 223 (513)
T ss_pred CCCCCCHHHHHHHHHHHHHh-CCCcccceEEEEe-c-------------------------CCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999874 210 01344432 1 1233346777888999999
Q ss_pred EEEEecc--ccccCCCCccHHHHHHHHh
Q 022982 201 MIMIDSD--DVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 201 ~ViiEar--GI~d~~G~~r~d~v~~ii~ 226 (289)
+ |++- |+=+..||...+.+-..+.
T Consensus 224 ~--Vd~Tv~GlGERaGNa~lE~vv~~L~ 249 (513)
T PRK00915 224 Q--VECTINGIGERAGNAALEEVVMALK 249 (513)
T ss_pred E--EEEEeecccccccCccHHHHHHHHH
Confidence 6 4775 8888999988887665554
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=92.47 E-value=3.4 Score=38.99 Aligned_cols=78 Identities=19% Similarity=0.113 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
+.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|. .|+ +
T Consensus 21 ~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi--~gv-------~-------------- 77 (294)
T TIGR02313 21 EALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFA--PGT-------G-------------- 77 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEE--EEC-------C--------------
Confidence 367888999999999999876554 489999999999988773 1 1111 122 1
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
..+..+.|++++..-++|||.|++-.-
T Consensus 78 ------~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 78 ------ALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred ------cchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 114778899999999999999999874
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.66 Score=42.21 Aligned_cols=117 Identities=15% Similarity=0.247 Sum_probs=65.5
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 022982 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162 (289)
Q Consensus 83 gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~ 162 (289)
||.++.| |-.++-. -+.+.++.||+.|+...=.++|+. |.+...+++..+-.. -+-+|..
T Consensus 41 GVt~SGG---EPllq~~--fl~~l~~~~k~~gi~~~leTnG~~--~~~~~~~l~~~~D~~------l~DiK~~------- 100 (213)
T PRK10076 41 GVTLSGG---EVLMQAE--FATRFLQRLRLWGVSCAIETAGDA--PASKLLPLAKLCDEV------LFDLKIM------- 100 (213)
T ss_pred EEEEeCc---hHHcCHH--HHHHHHHHHHHcCCCEEEECCCCC--CHHHHHHHHHhcCEE------EEeeccC-------
Confidence 6666666 3222222 467899999999999999999986 455555554432211 2233321
Q ss_pred cccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc-----ccccCCCCccHHHHHHHHhccCCCce
Q 022982 163 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKT 233 (289)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-----GI~d~~G~~r~d~v~~ii~~l~~ekl 233 (289)
|++.-..++ |. +.+.+++.++.-.++|++ +|-| |+.|+..+++ .+.++++.++++++
T Consensus 101 -d~~~~~~~t-------G~-~~~~il~nl~~l~~~g~~---v~iR~~vIPg~nd~~e~i~--~ia~~l~~l~~~~~ 162 (213)
T PRK10076 101 -DATQARDVV-------KM-NLPRVLENLRLLVSEGVN---VIPRLPLIPGFTLSRENMQ--QALDVLIPLGIKQI 162 (213)
T ss_pred -CHHHHHHHH-------CC-CHHHHHHHHHHHHhCCCc---EEEEEEEECCCCCCHHHHH--HHHHHHHHcCCceE
Confidence 111000011 11 367778889888999986 3446 6655543322 24445555665543
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=92.21 E-value=1.3 Score=46.35 Aligned_cols=96 Identities=16% Similarity=0.241 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
-++++++.+.+.|+|.|-|.+..-++ +.-.+.|+.+++.|+.|. ..+-.-. +|. +
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---------------~p~-~----- 151 (592)
T PRK09282 97 VVEKFVEKAAENGIDIFRIFDALNDV--RNMEVAIKAAKKAGAHVQ--GTISYTT---------------SPV-H----- 151 (592)
T ss_pred hhHHHHHHHHHCCCCEEEEEEecChH--HHHHHHHHHHHHcCCEEE--EEEEecc---------------CCC-C-----
Confidence 58899999999999999999888776 455678999999998754 3331100 111 1
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
|++.+++.+++-.++||+.| .|+|..|-..+..+.++++.+
T Consensus 152 -t~~~~~~~a~~l~~~Gad~I-----~i~Dt~G~~~P~~~~~lv~~l 192 (592)
T PRK09282 152 -TIEKYVELAKELEEMGCDSI-----CIKDMAGLLTPYAAYELVKAL 192 (592)
T ss_pred -CHHHHHHHHHHHHHcCCCEE-----EECCcCCCcCHHHHHHHHHHH
Confidence 58899999999999999977 478999999999888888655
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.20 E-value=2 Score=40.24 Aligned_cols=103 Identities=15% Similarity=0.227 Sum_probs=69.8
Q ss_pred chhHHHHHHH-hhcccccEEEecCccc-cccChhHHH-----------------HHHHHHH--hCCceecCCcHHHHHHH
Q 022982 39 SHNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIE-----------------EVVKRAH--QHDVYVSTGDWAEHLIR 97 (289)
Q Consensus 39 g~~~~~DlLe-~ag~yID~lKfg~GTs-~l~p~~~l~-----------------eKI~l~~--~~gV~v~~GtlfE~a~~ 97 (289)
.++.+.+++. ..-.-+|++=+|+=.| .+.+-..++ +.+.-.+ ..++++..=|++..++.
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~ 103 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQ 103 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhh
Confidence 4455555443 4455699999997542 111111122 2222222 23454443377777777
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022982 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
.| +++|++.|++.|++.+=|. +||.++..++++.++++|+...+
T Consensus 104 ~G---~e~f~~~~~~aGvdGviip----DLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 104 YG---VERFAADAAEAGVDGLIIP----DLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred cC---HHHHHHHHHHcCCcEEEEC----CCCHHHHHHHHHHHHHcCCcEEE
Confidence 75 9999999999999999996 68999999999999999998764
|
|
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.6 Score=41.44 Aligned_cols=155 Identities=12% Similarity=0.037 Sum_probs=98.3
Q ss_pred hhHHHHHHHhhcccccEEEecCccccccChh-----------HHHHHHHHHHhCCceecCCcHHHHHHHhCCc-----hH
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-----AF 103 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~-----~~ 103 (289)
.+.++..+++ =+|.+-+-..+|-.+.+. .+++-+++++++|..|..+- |-+..-+++ -+
T Consensus 77 ~~die~A~~~---g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~--ed~~r~d~~~~v~~~~ 151 (279)
T cd07947 77 KEDLKLVKEM---GLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL--EDITRADIYGFVLPFV 151 (279)
T ss_pred HHHHHHHHHc---CcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE--EcccCCCcccchHHHH
Confidence 3445555554 345666666666554442 35678889999998665421 333333221 46
Q ss_pred HHHHHHHHHcCCC-EEEecCCcccCCh-------hHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccC
Q 022982 104 KEYVEDCKQVGFD-TIELNVGSLEIPE-------ETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 104 ~~yl~~~k~lGF~-~IEISdGti~i~~-------~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
+++++.+.+.|.+ .|=+.|-.--..+ ++-.++++.+++. ++ +-.+++..+ ..
T Consensus 152 ~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~-p~~~l~~H~-Hn----------------- 212 (279)
T cd07947 152 NKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGV-PSENLEWHG-HN----------------- 212 (279)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCC-CCceEEEEe-cC-----------------
Confidence 6667777779999 6888887765544 4556888888773 21 111344433 11
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhcc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l 228 (289)
|...-+..+...++|||++ +++. |+=+..||.-++.+-..+..+
T Consensus 213 --------~~Gla~AN~laA~~aG~~~--vd~sv~GlGe~aGN~~tE~lv~~l~~~ 258 (279)
T cd07947 213 --------DFYKAVANAVAAWLYGASW--VNCTLLGIGERTGNCPLEAMVIEYAQL 258 (279)
T ss_pred --------CCChHHHHHHHHHHhCCCE--EEEecccccccccchhHHHHHHHHHHh
Confidence 2334477788899999997 5664 888999999998887767654
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=92.18 E-value=2.6 Score=40.13 Aligned_cols=124 Identities=13% Similarity=0.040 Sum_probs=77.3
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+++.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+ +
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv-------~---------------- 85 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGA-------T---------------- 85 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEe-------c----------------
Confidence 478899999999999999875443 489999999999998873 1011111222 0
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc-CCCceEEecCCc---hhHHHHHHHhC
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEATNP---RTSEWFIRRYG 251 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l-~~eklifEAP~k---~qQ~~~I~~fG 251 (289)
..++++.+++++..-++|||.|++=.=-.+..+-+---+-..+|++.. ++.=+++-.|.. ..-..+++++-
T Consensus 86 ----~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 86 ----TLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred ----cCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 114788899999999999999999875222221111122234445555 355566666532 22344444443
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=92.17 E-value=1.5 Score=40.57 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
+.++.+.+.|.+.|-|..-.-++ +.-.+.++.+++.|+.|.. ..... ..+ ++
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~--~~~~~~i~~ak~~G~~v~~--~~~~~------------------~~~------~~ 140 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA--DVSEQHIGAARKLGMDVVG--FLMMS------------------HMA------SP 140 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH--HHHHHHHHHHHHCCCeEEE--EEEec------------------cCC------CH
Confidence 56788899999999986544333 3556799999999986433 33110 011 58
Q ss_pred HHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+.+++.+++..++||+.|- |.|..|...++.+.++++.+
T Consensus 141 ~~~~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 179 (263)
T cd07943 141 EELAEQAKLMESYGADCVY-----VTDSAGAMLPDDVRERVRAL 179 (263)
T ss_pred HHHHHHHHHHHHcCCCEEE-----EcCCCCCcCHHHHHHHHHHH
Confidence 8899999999999999764 78899999999998888654
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.1 Score=42.37 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=68.0
Q ss_pred HHHHHHcCCCEEEecCCcccC--------Chh----HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 022982 107 VEDCKQVGFDTIELNVGSLEI--------PEE----TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i--------~~~----~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
++.+.+.|.+.|-+....-+. +.+ .-.+.|+.+++.|++|...+..-+.. + .+.
T Consensus 85 ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~-~----~~~--------- 150 (287)
T PRK05692 85 LEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGC-P----YEG--------- 150 (287)
T ss_pred HHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecC-C----CCC---------
Confidence 477788999999998655332 222 34579999999999876555543321 0 110
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
..|++.+++.+++..++||+.|. |.|..|-..+..+.++++.+
T Consensus 151 ------~~~~~~~~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 193 (287)
T PRK05692 151 ------EVPPEAVADVAERLFALGCYEIS-----LGDTIGVGTPGQVRAVLEAV 193 (287)
T ss_pred ------CCCHHHHHHHHHHHHHcCCcEEE-----eccccCccCHHHHHHHHHHH
Confidence 11589999999999999999764 67788888887777777543
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.3 Score=42.90 Aligned_cols=91 Identities=14% Similarity=0.186 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
+-++.+.+.|.+.|-|....-+. +.-.+.|+.+++.|++|. +..... + ..++
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~--~~~~~~i~~ak~~G~~v~--~~l~~a-~-----------------------~~~~ 143 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA--DVSEQHIGLARELGMDTV--GFLMMS-H-----------------------MAPP 143 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH--HHHHHHHHHHHHCCCeEE--EEEEec-c-----------------------CCCH
Confidence 44788999999999998755544 345689999999998753 333211 0 1158
Q ss_pred HHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+.++++++...++||+.| .|.|..|...++.+.+++..+
T Consensus 144 e~l~~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 182 (337)
T PRK08195 144 EKLAEQAKLMESYGAQCV-----YVVDSAGALLPEDVRDRVRAL 182 (337)
T ss_pred HHHHHHHHHHHhCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999976 478999999999999888744
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.3 Score=40.82 Aligned_cols=141 Identities=21% Similarity=0.241 Sum_probs=90.4
Q ss_pred hHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
..+-+.|..+| ||.+=+|+-+. .++ =.+.++.+.+. ++.+. ++.+. -.+-++.+.+.|++.|
T Consensus 23 ~~i~~~L~~~G--v~~iE~g~p~~---~~~-~~e~~~~l~~~~~~~~~~-------~~~r~---~~~~v~~a~~~g~~~i 86 (259)
T cd07939 23 LAIARALDEAG--VDEIEVGIPAM---GEE-EREAIRAIVALGLPARLI-------VWCRA---VKEDIEAALRCGVTAV 86 (259)
T ss_pred HHHHHHHHHcC--CCEEEEecCCC---CHH-HHHHHHHHHhcCCCCEEE-------EeccC---CHHHHHHHHhCCcCEE
Confidence 45566777777 78888886442 211 12344444432 22211 11221 1344677889999999
Q ss_pred EecCCcccCC--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 119 ELNVGSLEIP--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 119 EISdGti~i~--------~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
-++...-+.. . +.-.+.|+.+++.|+.|. |+..+. . ..+++.
T Consensus 87 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~---------~---------------~~~~~~ 140 (259)
T cd07939 87 HISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGAEDA---------S---------------RADPDF 140 (259)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--EeeccC---------C---------------CCCHHH
Confidence 9976443332 1 334578999999998653 444211 0 015889
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+.+.+++..++|++.| .|.|..|...++.+.+++..+
T Consensus 141 ~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l 177 (259)
T cd07939 141 LIEFAEVAQEAGADRL-----RFADTVGILDPFTTYELIRRL 177 (259)
T ss_pred HHHHHHHHHHCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 9999999999999976 478999999999998888643
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=1.8 Score=39.40 Aligned_cols=123 Identities=11% Similarity=0.113 Sum_probs=78.8
Q ss_pred chhHHHHHHHhhcccccEEEecCccc---------------cccChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCc
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSH---------------SLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPS 101 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs---------------~l~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~ 101 (289)
.++.++-+-+...+| +-+.+|-||- .++++..-.+.++.|+++||.+.|| |.-|+.-..
T Consensus 39 tp~a~~~I~~l~~~~-~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~--- 114 (201)
T PRK06015 39 TPAALDAIRAVAAEV-EEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELLAAANDSDVPLLPGAATPSEVMALR--- 114 (201)
T ss_pred CccHHHHHHHHHHHC-CCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHH---
Confidence 444554444444444 3466776662 2344456778899999999999998 789987554
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
++|++.|-+==...-= -.++|+.++. ++|.+-.. .+| + ++
T Consensus 115 ----------~~Ga~~vK~FPa~~~G----G~~yikal~~----plp~~~l~----ptG--G-------V~--------- 154 (201)
T PRK06015 115 ----------EEGYTVLKFFPAEQAG----GAAFLKALSS----PLAGTFFC----PTG--G-------IS--------- 154 (201)
T ss_pred ----------HCCCCEEEECCchhhC----CHHHHHHHHh----hCCCCcEE----ecC--C-------CC---------
Confidence 6899999875422110 1367777766 45544332 111 0 01
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccC
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKH 212 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~ 212 (289)
.+.+..+|+||+..+.. +.-++++
T Consensus 155 ------~~n~~~~l~ag~~~~~g-gs~l~~~ 178 (201)
T PRK06015 155 ------LKNARDYLSLPNVVCVG-GSWVAPK 178 (201)
T ss_pred ------HHHHHHHHhCCCeEEEE-chhhCCc
Confidence 47889999999998887 7777754
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=1.8 Score=44.59 Aligned_cols=172 Identities=12% Similarity=0.116 Sum_probs=119.1
Q ss_pred CCceeEe----cCCCCCCCchhHHHHHHHhhc-ccccEEEecCccccccChhHHHHHHHHHHhCCcee----c-CCcHHH
Q 022982 24 FGVTEMR----SPHYTLSSSHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----S-TGDWAE 93 (289)
Q Consensus 24 ~GlT~V~----DkGl~~~~g~~~~~DlLe~ag-~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v----~-~GtlfE 93 (289)
+-+.|.. =+||.-. .-+-.+..++.+. .-||++-+.-..+-+ +.++.-++.++++|-.+ | +++-
T Consensus 77 t~lqmL~Rg~N~vGy~~y-~ddvv~~fv~~a~~~Gidi~RIfd~lndv---~nl~~ai~~vk~ag~~~~~~i~yt~sp-- 150 (499)
T PRK12330 77 SRLQMLLRGQNLLGYRHY-EDEVVDRFVEKSAENGMDVFRVFDALNDP---RNLEHAMKAVKKVGKHAQGTICYTVSP-- 150 (499)
T ss_pred CeEEEEEcccccCCccCc-chhHHHHHHHHHHHcCCCEEEEEecCChH---HHHHHHHHHHHHhCCeEEEEEEEecCC--
Confidence 4466665 3666554 4445566666654 559999998876666 57999999999999844 2 3321
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 022982 94 HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 94 ~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
...++.+.++.+.+.+.|.+.|=|.|-.--+.+++-.++|+.+++. +...-.+++.+ ..
T Consensus 151 ---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~-~~~~ipI~~H~-Hn---------------- 209 (499)
T PRK12330 151 ---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEA-CGEDTRINLHC-HS---------------- 209 (499)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHh-CCCCCeEEEEe-CC----------------
Confidence 2344567777888889999999999999999999999999999984 10011244432 11
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
|...-+-..-..++|||+.|=.=-.|+=...|+.-++.+-..++..+.+
T Consensus 210 ---------t~GlA~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~g~~ 258 (499)
T PRK12330 210 ---------TTGVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGTGYT 258 (499)
T ss_pred ---------CCCcHHHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhcCCC
Confidence 1222356677789999996433334888888998888777777766643
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=91.89 E-value=5.8 Score=37.12 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHc-CCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 102 AFKEYVEDCKQV-GFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 102 ~~~~yl~~~k~l-GF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
.+.++++++.+. |.+.|=+.-.| ..|+.++|.++++.+.+. +...+.+-.+ |+ .
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~---~~~~~~viag---v~--~-------------- 79 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEA---AKGKVTLIAH---VG--S-------------- 79 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH---hCCCCeEEec---cC--C--------------
Confidence 688889999888 99998776543 689999999999988884 1111111111 11 0
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc-CCCceEEecC
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEAT 238 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l-~~eklifEAP 238 (289)
.+.++.|+.++..-++||+.|++=.--.+..+-+---+-...|++.. ++.=++.-.|
T Consensus 80 ----~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 80 ----LNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred ----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 14788899999999999999997553222111111122233444555 4555555555
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.86 E-value=2.2 Score=41.66 Aligned_cols=135 Identities=19% Similarity=0.304 Sum_probs=101.0
Q ss_pred chhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
.+.++..+...+..+ |+=+|+.+|=-.|=+ .|.+.|+..++++ +.|++++.|.-.+..+.+.+|+.|.+.
T Consensus 44 s~eei~~~~~~~~~~Gv~kvRlTGGEPllR~--dl~eIi~~l~~~~-------~~~islTTNG~~L~~~a~~Lk~AGl~r 114 (322)
T COG2896 44 SLEEIRRLVRAFAELGVEKVRLTGGEPLLRK--DLDEIIARLARLG-------IRDLSLTTNGVLLARRAADLKEAGLDR 114 (322)
T ss_pred CHHHHHHHHHHHHHcCcceEEEeCCCchhhc--CHHHHHHHHhhcc-------cceEEEecchhhHHHHHHHHHHcCCcE
Confidence 567888888888888 889999999988865 7999999999983 344555544345778888999999999
Q ss_pred EEecCCccc------CC----hhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 118 IELNVGSLE------IP----EETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 118 IEISdGti~------i~----~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
|-||-.|++ |. .+.=.+=|+.|.+.||. ||=..-+.-+ + +.++
T Consensus 115 VNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kg---v-----------------------Nd~e 168 (322)
T COG2896 115 VNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKG---V-----------------------NDDE 168 (322)
T ss_pred EEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecC---C-----------------------CHHH
Confidence 999988763 22 23334567899999997 7766666322 1 2455
Q ss_pred HHHHHHHHHHccCcEEEEeccc
Q 022982 187 LIRRAERCLEAGADMIMIDSDD 208 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarG 208 (289)
+...++-.-+-|+..=+||=..
T Consensus 169 i~~l~e~~~~~~~~lrfIE~m~ 190 (322)
T COG2896 169 IEDLLEFAKERGAQLRFIELMP 190 (322)
T ss_pred HHHHHHHHhhcCCceEEEEEee
Confidence 5666666779999999999763
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=91.84 E-value=4 Score=39.06 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHH
Q 022982 70 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLL 133 (289)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~ 133 (289)
+.+..-=++++.-+|+|.- .||-+.. .+.+-++...+.|.-.|-|-|+.. -+|.++..
T Consensus 62 e~~~~~~~I~~~~~lPv~aD~d~GyG~~~------~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~ 135 (290)
T TIGR02321 62 THLEMMRAIASTVSIPLIADIDTGFGNAV------NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQ 135 (290)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcH------HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHH
Confidence 3444444566777787774 1343221 344556666799999999988751 25888888
Q ss_pred HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCC
Q 022982 134 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 213 (289)
Q Consensus 134 ~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~ 213 (289)
+-|+.+++. +--++|-+ ... -|. .|.. ...++.|+++++..+||||.|.+|+.
T Consensus 136 ~kI~Aa~~a--~~~~d~~I---~AR----TDa---------~~~~---~g~deAI~Ra~aY~eAGAD~ifv~~~------ 188 (290)
T TIGR02321 136 GKIAAATAA--RADRDFVV---IAR----VEA---------LIAG---LGQQEAVRRGQAYEEAGADAILIHSR------ 188 (290)
T ss_pred HHHHHHHHh--CCCCCEEE---EEE----ecc---------cccc---CCHHHHHHHHHHHHHcCCCEEEecCC------
Confidence 888888775 22234444 111 111 0111 13688999999999999999999972
Q ss_pred CCccHHHHHHHHhccCC-Cce-EEec
Q 022982 214 DSLRADIIAKVIGRLGL-EKT-MFEA 237 (289)
Q Consensus 214 G~~r~d~v~~ii~~l~~-ekl-ifEA 237 (289)
....+.+.++.+.++. -.+ +.+.
T Consensus 189 -~~~~~ei~~~~~~~~~p~pv~~~~~ 213 (290)
T TIGR02321 189 -QKTPDEILAFVKSWPGKVPLVLVPT 213 (290)
T ss_pred -CCCHHHHHHHHHhcCCCCCeEEecC
Confidence 2357889999988873 234 5554
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.9 Score=41.33 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=52.4
Q ss_pred hhHHHHHHHhhcccccEEEecCcccc------ccChhHHHHHHHHHHhC------Cc----eecCCcHHHHHHHhCCchH
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH------DV----YVSTGDWAEHLIRNGPSAF 103 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~------gV----~v~~GtlfE~a~~qg~~~~ 103 (289)
...+..+++.++++.|++=+-++|-. ...++.+.+.++..++. ++ ++.|+ +- .. .+
T Consensus 147 ~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~-~~-----~~--~~ 218 (327)
T cd04738 147 VEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD-LS-----DE--EL 218 (327)
T ss_pred HHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC-CC-----HH--HH
Confidence 34566666777888888888775543 34456677776666542 13 34343 11 11 46
Q ss_pred HHHHHHHHHcCCCEEEecCCcccC
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEI 127 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i 127 (289)
.+..+.|.+.|.|.|.+++.+..+
T Consensus 219 ~~ia~~l~~aGad~I~~~n~~~~~ 242 (327)
T cd04738 219 EDIADVALEHGVDGIIATNTTISR 242 (327)
T ss_pred HHHHHHHHHcCCcEEEEECCcccc
Confidence 677788899999999999987654
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.81 E-value=3.1 Score=38.76 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=51.1
Q ss_pred hHHHHHHHhhccc-ccEEEecCcc--------ccccChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHH
Q 022982 41 NVLEDIFESMGQF-VDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (289)
Q Consensus 41 ~~~~DlLe~ag~y-ID~lKfg~GT--------s~l~p~~~l~eKI~l~~~~-gV~v~~G-tlfE~a~~qg~~~~~~yl~~ 109 (289)
..+.+..+.+-++ .|++=+-++| +....++.+.+.++-.+++ ++++..- +. +.+.+.+..+.
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-------~~~~~~~~a~~ 174 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-------NVTDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-------CchhHHHHHHH
Confidence 3444444444455 6777664443 4446667888999999888 7766642 11 11246677888
Q ss_pred HHHcCCCEEEecCCcc
Q 022982 110 CKQVGFDTIELNVGSL 125 (289)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (289)
+.+.|.|.|-++|.+.
T Consensus 175 ~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 175 AEEAGADGLTLINTLK 190 (296)
T ss_pred HHHcCCCEEEEECCCc
Confidence 9999999999886543
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=91.76 E-value=5 Score=36.88 Aligned_cols=102 Identities=16% Similarity=0.265 Sum_probs=63.4
Q ss_pred hhHHHHHHHhhcc-cccEEEecCcc-ccccChhHHH-----------------HHHHHHHhC-CceecCCcHHHHHHHhC
Q 022982 40 HNVLEDIFESMGQ-FVDGLKFSGGS-HSLMPKPFIE-----------------EVVKRAHQH-DVYVSTGDWAEHLIRNG 99 (289)
Q Consensus 40 ~~~~~DlLe~ag~-yID~lKfg~GT-s~l~p~~~l~-----------------eKI~l~~~~-gV~v~~GtlfE~a~~qg 99 (289)
+..+.+.+...-+ -+|++=+|.=. -.+++-..++ +.++..+++ ++++..=+.+...+..
T Consensus 13 ~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~- 91 (242)
T cd04724 13 LETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY- 91 (242)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh-
Confidence 3445554443333 49999999411 1134433444 233344432 4443221344444444
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
.+++|++.|++.|++.|=+-| +|.++..++++.++++|+++.+
T Consensus 92 --G~~~fi~~~~~aG~~giiipD----l~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 92 --GLERFLRDAKEAGVDGLIIPD----LPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred --CHHHHHHHHHHCCCcEEEECC----CCHHHHHHHHHHHHHcCCcEEE
Confidence 389999999999999998864 5678888999999999887544
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=91.73 E-value=1.5 Score=45.75 Aligned_cols=96 Identities=18% Similarity=0.258 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
-++++++.+.+.|+|.|-|.+..-++ +.-.+.|+.++++|+.|. +.+-... +|.
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---------------~p~------- 145 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP--RNLQAAIQAAKKHGAHAQ--GTISYTT---------------SPV------- 145 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH--HHHHHHHHHHHHcCCEEE--EEEEecc---------------CCC-------
Confidence 48889999999999999999777665 456678999999998654 3331100 111
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
-|++.+++.+++..++||+.| .|+|..|-..+..+.++++.+
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I-----~i~Dt~G~~~P~~v~~lv~~l 187 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSI-----CIKDMAGILTPKAAYELVSAL 187 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCCCCCcCHHHHHHHHHHH
Confidence 158889999999999999976 478999999998888888655
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.5 Score=43.12 Aligned_cols=149 Identities=8% Similarity=0.035 Sum_probs=89.2
Q ss_pred HHHHHHHhhcccccEEEecCcccc-ccCh-hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHS-LMPK-PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~-l~p~-~~l~eKI~l~~~-~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
.+-+.|..+| ||.+=.|+..+. ..|. ..-++-++.+++ .++. +...+ .+ .+=++.+.+.|.+.|
T Consensus 72 ~ia~~L~~~G--V~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~-----~~~l~--~n----~~die~A~~~g~~~v 138 (347)
T PLN02746 72 ELIQRLVSSG--LPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGAR-----FPVLT--PN----LKGFEAAIAAGAKEV 138 (347)
T ss_pred HHHHHHHHcC--CCEEEECCCcCcccccccccHHHHHHHHHhccCCc-----eeEEc--CC----HHHHHHHHHcCcCEE
Confidence 4556677788 888888865432 1110 011222333332 2221 11111 12 455677888999999
Q ss_pred EecCCc--------ccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 119 ELNVGS--------LEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 119 EISdGt--------i~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
-+.-.+ +..+.++= .++|+.+++.|++|.--+..-|+. ..+. ..|++.
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~-----p~~~---------------r~~~~~ 198 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGC-----PIEG---------------PVPPSK 198 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecC-----CccC---------------CCCHHH
Confidence 887433 23444443 369999999999874333332311 1110 116899
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+++.+++..++||+.|. |.|..|-..+..+.++++.+
T Consensus 199 l~~~~~~~~~~Gad~I~-----l~DT~G~a~P~~v~~lv~~l 235 (347)
T PLN02746 199 VAYVAKELYDMGCYEIS-----LGDTIGVGTPGTVVPMLEAV 235 (347)
T ss_pred HHHHHHHHHHcCCCEEE-----ecCCcCCcCHHHHHHHHHHH
Confidence 99999999999999874 67888888877777777554
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.88 Score=43.60 Aligned_cols=116 Identities=19% Similarity=0.302 Sum_probs=77.6
Q ss_pred HHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHcC
Q 022982 78 RAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 78 l~~~~gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-----------i~i~~~~r~~lI~~~~~~G 143 (289)
++..-+|+|.- .||- ++..+.+.++...+.|.-.|-|-|.. --+|.++..+-|+.+++.-
T Consensus 73 I~~~~~iPviaD~d~GyG------~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~ 146 (292)
T PRK11320 73 ITDACDLPLLVDIDTGFG------GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDAR 146 (292)
T ss_pred HHhccCCCEEEECCCCCC------CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhc
Confidence 34555677664 1442 23356677788889999999998854 2379999888888887741
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHH
Q 022982 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAK 223 (289)
Q Consensus 144 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ 223 (289)
- -++|-+ ... -|. . + ....++.|+++++..+||||.|.+|+- -..+.+.+
T Consensus 147 ~--~~d~~I---iAR----TDa----~-----~----~~g~deAI~Ra~aY~eAGAD~ifi~~~--------~~~~~i~~ 196 (292)
T PRK11320 147 T--DPDFVI---MAR----TDA----L-----A----VEGLDAAIERAQAYVEAGADMIFPEAM--------TELEMYRR 196 (292)
T ss_pred c--CCCeEE---EEe----cCc----c-----c----ccCHHHHHHHHHHHHHcCCCEEEecCC--------CCHHHHHH
Confidence 1 133433 111 111 0 0 124789999999999999999999972 13677777
Q ss_pred HHhccC
Q 022982 224 VIGRLG 229 (289)
Q Consensus 224 ii~~l~ 229 (289)
+.+.++
T Consensus 197 ~~~~~~ 202 (292)
T PRK11320 197 FADAVK 202 (292)
T ss_pred HHHhcC
Confidence 887665
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.63 E-value=6.6 Score=38.56 Aligned_cols=142 Identities=21% Similarity=0.320 Sum_probs=91.8
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
.+-+.|..+| ||.+=+||=.+ .++ =.+.++.+.+.+.....-+| .+ ...+-++.+.+.|++.|.|+
T Consensus 30 ~ia~~L~~~G--V~~IE~G~p~~---~~~-~~e~i~~i~~~~~~~~i~~~-----~r---~~~~di~~a~~~g~~~i~i~ 95 (378)
T PRK11858 30 AIARMLDEIG--VDQIEAGFPAV---SED-EKEAIKAIAKLGLNASILAL-----NR---AVKSDIDASIDCGVDAVHIF 95 (378)
T ss_pred HHHHHHHHhC--CCEEEEeCCCc---ChH-HHHHHHHHHhcCCCeEEEEE-----cc---cCHHHHHHHHhCCcCEEEEE
Confidence 4556677777 78888886433 222 23445555555554222233 11 12445778888999999998
Q ss_pred CCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 122 VGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 122 dGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
..+-++ +. +.-.+.|+.+++.|+.| .|+..+. . -.|++.+++
T Consensus 96 ~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v--~~~~ed~---------~---------------r~~~~~l~~ 149 (378)
T PRK11858 96 IATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYV--SFSAEDA---------S---------------RTDLDFLIE 149 (378)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEeccC---------C---------------CCCHHHHHH
Confidence 765443 22 33345888999999874 3332110 0 015888999
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.++...++||+.|. |+|..|-..+..+.+++..+
T Consensus 150 ~~~~~~~~Ga~~I~-----l~DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 150 FAKAAEEAGADRVR-----FCDTVGILDPFTMYELVKEL 183 (378)
T ss_pred HHHHHHhCCCCEEE-----EeccCCCCCHHHHHHHHHHH
Confidence 99999999999864 67888988888888877654
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=91.55 E-value=2.3 Score=40.89 Aligned_cols=124 Identities=18% Similarity=0.180 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHH
Q 022982 71 FIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYV 136 (289)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI 136 (289)
.+..--++++..+++|.- + ||-+. ..+.+.++...+.|.-.|-|-|... -+|.++..+-|
T Consensus 65 ~~~~~~~I~~~~~lPv~aD~dtGyG~~------~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI 138 (294)
T TIGR02319 65 QAINAKNIVLAVDVPVIMDADAGYGNA------MSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKI 138 (294)
T ss_pred HHHHHHHHHhccCCCEEEECCCCCCCc------HHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHH
Confidence 344444566777887774 1 34221 1244556777899999999988754 26888888888
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCc
Q 022982 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSL 216 (289)
Q Consensus 137 ~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~ 216 (289)
+.+++.-= -++|-+ ...+ |. + . ....++.|+++++..+||||.|.+|+- .
T Consensus 139 ~Aa~~A~~--~~d~~I---~ART----Da-~--------~----~~g~deaI~Ra~aY~eAGAD~ifi~~~--------~ 188 (294)
T TIGR02319 139 EAAVEARE--DEDFTI---IART----DA-R--------E----SFGLDEAIRRSREYVAAGADCIFLEAM--------L 188 (294)
T ss_pred HHHHHhcc--CCCeEE---EEEe----cc-c--------c----cCCHHHHHHHHHHHHHhCCCEEEecCC--------C
Confidence 88776411 134444 1111 11 0 0 124789999999999999999999962 2
Q ss_pred cHHHHHHHHhccCC
Q 022982 217 RADIIAKVIGRLGL 230 (289)
Q Consensus 217 r~d~v~~ii~~l~~ 230 (289)
..+.+.++.+.++.
T Consensus 189 ~~~ei~~~~~~~~~ 202 (294)
T TIGR02319 189 DVEEMKRVRDEIDA 202 (294)
T ss_pred CHHHHHHHHHhcCC
Confidence 45778888887763
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=91.55 E-value=2.3 Score=36.91 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=60.5
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC--CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCC
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF 115 (289)
.+....++++...++||.+|+|+ ...++.. .+-|+..+++ ++++... ... + --..+++.+.+.|.
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~--~~~~~~g--~~~i~~i~~~~~~~~i~~~~~v~------~--~~~~~~~~~~~aGa 78 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGT--PLIKSEG--MEAVRALREAFPDKIIVADLKTA------D--AGALEAEMAFKAGA 78 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCC--HHHHHhC--HHHHHHHHHHCCCCEEEEEEEec------c--ccHHHHHHHHhcCC
Confidence 56788899999999999999964 2222211 2344444443 6655432 222 2 11234688999999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022982 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (289)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (289)
+.|=+..-+ +.+.-.++++.++++|.++
T Consensus 79 d~i~~h~~~---~~~~~~~~i~~~~~~g~~~ 106 (202)
T cd04726 79 DIVTVLGAA---PLSTIKKAVKAAKKYGKEV 106 (202)
T ss_pred CEEEEEeeC---CHHHHHHHHHHHHHcCCeE
Confidence 999987654 2345567999999988653
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.87 Score=43.12 Aligned_cols=57 Identities=26% Similarity=0.453 Sum_probs=45.9
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccc
Q 022982 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 91 lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
..|.|+-.+ -+..+=+..+|++|||.||+|-.- ++-+.++|..+++.+.+.|+..-|
T Consensus 9 IYEKAlp~~-~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipS 72 (287)
T COG3623 9 IYEKALPNG-FSWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPS 72 (287)
T ss_pred eehhhccCC-CCHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccc
Confidence 346666554 356777888899999999999754 588999999999999999988654
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.45 E-value=2.1 Score=44.01 Aligned_cols=145 Identities=11% Similarity=0.052 Sum_probs=101.7
Q ss_pred ccEEEecCccccccChhH-----------HHHHHHHHHhCCce-ecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 54 VDGLKFSGGSHSLMPKPF-----------IEEVVKRAHQHDVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~~-----------l~eKI~l~~~~gV~-v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
+|.+-+-..+|-++-+.. +.+-|+.++++|.. +..|. |.+..-+++-+.++++.+.+.|-+.|-+.
T Consensus 182 ~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~--EDa~Rtd~efl~~~~~~a~~~Gad~I~l~ 259 (503)
T PLN03228 182 RPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC--EDGGRSDKEFLCKILGEAIKAGATSVGIA 259 (503)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc--ccccccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 356777777776664332 47788899999974 55443 44555555677889999999999999999
Q ss_pred CCcccCChhHHHHHHHHHHHcCCccc--ceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 122 VGSLEIPEETLLRYVRLVKSAGLKAK--PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 122 dGti~i~~~~r~~lI~~~~~~G~~v~--~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
|-.--+.+.+-.++|+.+++. +... ..+++.+ . .|...-+-.+-..++|||
T Consensus 260 DTvG~~tP~~v~~lV~~l~~~-~~~~~~i~I~~H~-H-------------------------ND~GlAvANslaAi~aGa 312 (503)
T PLN03228 260 DTVGINMPHEFGELVTYVKAN-TPGIDDIVFSVHC-H-------------------------NDLGLATANTIAGICAGA 312 (503)
T ss_pred cCCCCCCHHHHHHHHHHHHHH-hccccCceeEecc-c-------------------------CCcChHHHHHHHHHHhCC
Confidence 999999999999999999873 1100 1123321 1 122333566777889999
Q ss_pred cEEEEeccccccCCCCccHHHHHHHHhc
Q 022982 200 DMIMIDSDDVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 200 ~~ViiEarGI~d~~G~~r~d~v~~ii~~ 227 (289)
++|=.=--||=+..||.-.+.+-..++.
T Consensus 313 ~~Vd~Tv~GiGERaGNa~lEevv~~L~~ 340 (503)
T PLN03228 313 RQVEVTINGIGERSGNASLEEVVMALKC 340 (503)
T ss_pred CEEEEeccccccccCCccHHHHHHHHHh
Confidence 9985533488889999988876666543
|
|
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=91.45 E-value=1.7 Score=41.32 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=58.7
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHH
Q 022982 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (289)
+..++-|.++|-|-+| .+....|+.+.+.|.-|.-.+|..-.... .+ +.+....+ ..++.+++
T Consensus 100 rl~~eaGa~aVkiEgg------~~~~~~i~~l~~~gIpV~gHiGltPq~a~----~~---ggy~~qgr----t~~~a~~~ 162 (263)
T TIGR00222 100 RVMQETGANAVKLEGG------EWLVETVQMLTERGVPVVGHLGLTPQSVN----IL---GGYKVQGK----DEEAAKKL 162 (263)
T ss_pred HHHHHhCCeEEEEcCc------HhHHHHHHHHHHCCCCEEEecCCCceeEe----ec---CCeeecCC----CHHHHHHH
Confidence 6677889999999998 55678899999999999977777432111 00 10111000 01236789
Q ss_pred HHHHHHHHHccCcEEEEec
Q 022982 188 IRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEa 206 (289)
|+++++..+|||+.|.+|+
T Consensus 163 i~~A~a~e~AGA~~ivlE~ 181 (263)
T TIGR00222 163 LEDALALEEAGAQLLVLEC 181 (263)
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 9999999999999999998
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=91.39 E-value=8.2 Score=33.25 Aligned_cols=96 Identities=17% Similarity=0.345 Sum_probs=68.0
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcC-C
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVG-F 115 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~lG-F 115 (289)
.+.++.++++.+..++..+.|.+|-..+.|+ +.+-++.+++.|+.++ +.|. .+++++...+.| .
T Consensus 48 ~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~--l~~li~~~~~~g~~v~i~TNg~-----------~~~~l~~l~~~g~~ 114 (191)
T TIGR02495 48 EVEFLLEFLRSRQGLIDGVVITGGEPTLQAG--LPDFLRKVRELGFEVKLDTNGS-----------NPRVLEELLEEGLV 114 (191)
T ss_pred CHHHHHHHHHHhcCCCCeEEEECCcccCcHh--HHHHHHHHHHCCCeEEEEeCCC-----------CHHHHHHHHhcCCC
Confidence 5678888888888889999999999988773 8999999999998554 3221 234555666678 4
Q ss_pred CEEEecCCcc-c----C-----Ch-hHHHHHHHHHHHcCCccc
Q 022982 116 DTIELNVGSL-E----I-----PE-ETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 116 ~~IEISdGti-~----i-----~~-~~r~~lI~~~~~~G~~v~ 147 (289)
+.|-+|-... + + .. ++-.+.|+.+++.|+.+.
T Consensus 115 ~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~ 157 (191)
T TIGR02495 115 DYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFE 157 (191)
T ss_pred cEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEE
Confidence 8887754421 1 1 11 145678888999887644
|
This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=91.36 E-value=6.5 Score=34.43 Aligned_cols=135 Identities=19% Similarity=0.265 Sum_probs=72.6
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
..+.+.+.-+++|=+- +..+...+.+-++.++++|+++.++ ..+|....+..+.+.++|.|.|-+.
T Consensus 68 ~~~~~~~~Gad~i~vh-------~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVL-------GVADDATIKGAVKAAKKHGKEVQVD-------LINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEe-------ccCCHHHHHHHHHHHHHcCCEEEEE-------ecCCCChHHHHHHHHHcCCCEEEEc
Confidence 3677676666666433 2234456788999999999987642 0012223344455577899999886
Q ss_pred CCcccCCh-hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 122 VGSLEIPE-ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 122 dGti~i~~-~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
.|+-.-.. ....+.|+.+++. +. .+.+-+ . | + + + .+.++..+++||+
T Consensus 134 pg~~~~~~~~~~~~~i~~l~~~-~~-~~~i~v---~---G--G-----------------I-~----~~n~~~~~~~Ga~ 181 (206)
T TIGR03128 134 TGLDEQAKGQNPFEDLQTILKL-VK-EARVAV---A---G--G-----------------I-N----LDTIPDVIKLGPD 181 (206)
T ss_pred CCcCcccCCCCCHHHHHHHHHh-cC-CCcEEE---E---C--C-----------------c-C----HHHHHHHHHcCCC
Confidence 65431110 0122344444441 00 011211 0 0 0 0 0 3556678899999
Q ss_pred EEEEeccccccCCCCccHHHHHHHH
Q 022982 201 MIMIDSDDVCKHADSLRADIIAKVI 225 (289)
Q Consensus 201 ~ViiEarGI~d~~G~~r~d~v~~ii 225 (289)
.|++= +.||+++. ..+.+.++.
T Consensus 182 ~v~vG-sai~~~~d--~~~~~~~l~ 203 (206)
T TIGR03128 182 IVIVG-GAITKAAD--PAEAARQIR 203 (206)
T ss_pred EEEEe-ehhcCCCC--HHHHHHHHH
Confidence 88874 45887543 344455543
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=91.34 E-value=1.7 Score=38.92 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=58.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.++.|.+.|-+.|.+.......|. ++-.++++.+++.| +.+.+ ++ .
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv--~v---~-------------------------- 131 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA--DI---S-------------------------- 131 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE--EC---C--------------------------
Confidence 4779999999999988655555555 36668999999987 43332 11 0
Q ss_pred cHHHHHHHHHHHHHccCcEEEEeccccccCC---CCccHHHHHHHHhcc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHA---DSLRADIIAKVIGRL 228 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~---G~~r~d~v~~ii~~l 228 (289)
++ +.+++..++|+++|.++..|.+... .....+.+.++.+.+
T Consensus 132 t~----~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~ 176 (219)
T cd04729 132 TL----EEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL 176 (219)
T ss_pred CH----HHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc
Confidence 13 3346677899999998877754432 122345666666544
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=1.9 Score=44.42 Aligned_cols=152 Identities=16% Similarity=0.076 Sum_probs=86.9
Q ss_pred hHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCC---ceecCCcHHHH-HHHhC-CchHHHHHHHHHHcCC
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTGDWAEH-LIRNG-PSAFKEYVEDCKQVGF 115 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g---V~v~~GtlfE~-a~~qg-~~~~~~yl~~~k~lGF 115 (289)
..+-+.|..+| ||.+-.||-.+. | + -.+.++...+.. ...+.+....+ ++.+- .+.++.-++..++-|.
T Consensus 109 i~Ia~~L~~~G--Vd~IEvG~Pa~s--~-~-e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~~ 182 (503)
T PLN03228 109 LEIARQLAKLR--VDIMEVGFPGSS--E-E-EFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEALKYAKR 182 (503)
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCC--H-H-HHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhhcccCC
Confidence 35567788888 888888883322 2 1 222233333221 11111211111 22221 0013333332334477
Q ss_pred CEEEecCCcccCChhHH------------HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 116 DTIELNVGSLEIPEETL------------LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 116 ~~IEISdGti~i~~~~r------------~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
+.|-+.-.+-++-.+.+ .+.|+.++++|+++ .+|+-.+ . . -.|
T Consensus 183 ~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~-v~f~~ED----------a----~----------Rtd 237 (503)
T PLN03228 183 PRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHD-IQFGCED----------G----G----------RSD 237 (503)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCce-EEecccc----------c----c----------ccC
Confidence 88887666554443322 57888999998861 2333321 1 0 115
Q ss_pred HHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
++.+.+.++...++||+.| .|+|..|-..+..+.++++.+
T Consensus 238 ~efl~~~~~~a~~~Gad~I-----~l~DTvG~~tP~~v~~lV~~l 277 (503)
T PLN03228 238 KEFLCKILGEAIKAGATSV-----GIADTVGINMPHEFGELVTYV 277 (503)
T ss_pred HHHHHHHHHHHHhcCCCEE-----EEecCCCCCCHHHHHHHHHHH
Confidence 7888999999999999986 478899999988888877554
|
|
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.6 Score=44.95 Aligned_cols=136 Identities=22% Similarity=0.281 Sum_probs=91.0
Q ss_pred HHHhhcccccEE--EecCccccccChhHHHHHHHHHHhCC-ceecC--C-cHHHHHHH---------------hCCch-H
Q 022982 46 IFESMGQFVDGL--KFSGGSHSLMPKPFIEEVVKRAHQHD-VYVST--G-DWAEHLIR---------------NGPSA-F 103 (289)
Q Consensus 46 lLe~ag~yID~l--Kfg~GTs~l~p~~~l~eKI~l~~~~g-V~v~~--G-tlfE~a~~---------------qg~~~-~ 103 (289)
-|+..|+.+|=+ =|.+||+.-+|.+..+.-++.++++= -+... + .-+|-+.. -.|+. -
T Consensus 126 ~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~ 205 (522)
T TIGR01211 126 QLEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCR 205 (522)
T ss_pred HHHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCC
Confidence 345577887643 38999999999999999999998761 11111 1 00222211 22333 4
Q ss_pred HHHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
++.++.++++|++.||+--=|. .-+.++-.+.++.+++.||++...+ ..++. .
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~L--M~GLP----g----------- 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHI--MPGLP----G----------- 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEe--ecCCC----C-----------
Confidence 7899999999999999866555 3455666788999999999755443 22220 1
Q ss_pred CCCCccccccHHHHHHHHHHHHH---ccCcEEEEec
Q 022982 174 APRSTEYVEDVDLLIRRAERCLE---AGADMIMIDS 206 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLe---AGA~~ViiEa 206 (289)
+|.+..++.++..++ .+.|.|-+-.
T Consensus 269 --------qt~e~~~~t~~~l~~~~~l~pD~Ikiyp 296 (522)
T TIGR01211 269 --------SSFERDLEMFREIFEDPRFKPDMLKIYP 296 (522)
T ss_pred --------CCHHHHHHHHHHHHhccCCCcCEEEEec
Confidence 136667777777664 7899887666
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=91.29 E-value=2.9 Score=39.23 Aligned_cols=136 Identities=18% Similarity=0.217 Sum_probs=81.0
Q ss_pred cccccEEEecCccccccChhHHHHHHHHHHhCCc--eecCCc---HHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-Cc
Q 022982 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGD---WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GS 124 (289)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~Gt---lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gt 124 (289)
.+++|++|+|-++..=++ |.+ .+-+.|. .+++|. +-| ++.-++.+++-|-+-|=+-. |+
T Consensus 106 ~~~~d~lkI~s~~~~n~~---LL~---~~a~~gkPVilk~G~~~t~~e---------~~~Ave~i~~~Gn~~i~l~~rG~ 170 (260)
T TIGR01361 106 AEYADILQIGARNMQNFE---LLK---EVGKQGKPVLLKRGMGNTIEE---------WLYAAEYILSSGNGNVILCERGI 170 (260)
T ss_pred HhhCCEEEECcccccCHH---HHH---HHhcCCCcEEEeCCCCCCHHH---------HHHHHHHHHHcCCCcEEEEECCC
Confidence 377999999977544333 333 3344565 455673 322 22334555666775444422 44
Q ss_pred ccC-C---hhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 125 LEI-P---EETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 125 i~i-~---~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
-+- | .+--++.|..+++. ++. +|.- +... .++ .+.....+...+.+||
T Consensus 171 s~y~~~~~~~~dl~~i~~lk~~~~~p----V~~d-s~Hs---~G~-------------------r~~~~~~~~aAva~Ga 223 (260)
T TIGR01361 171 RTFEKATRNTLDLSAVPVLKKETHLP----IIVD-PSHA---AGR-------------------RDLVIPLAKAAIAAGA 223 (260)
T ss_pred CCCCCCCcCCcCHHHHHHHHHhhCCC----EEEc-CCCC---CCc-------------------cchHHHHHHHHHHcCC
Confidence 333 2 23445677777763 322 4441 1111 111 2233566778999999
Q ss_pred cEEEEec-----cccccCCCCccHHHHHHHHhcc
Q 022982 200 DMIMIDS-----DDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 200 ~~ViiEa-----rGI~d~~G~~r~d~v~~ii~~l 228 (289)
+-+|||. +.+.|..-.+..+.+.++++++
T Consensus 224 ~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i 257 (260)
T TIGR01361 224 DGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKEL 257 (260)
T ss_pred CEEEEEeCCCccccCCcchhcCCHHHHHHHHHHH
Confidence 9999998 3678999999999999998653
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=91.29 E-value=6.9 Score=38.40 Aligned_cols=130 Identities=16% Similarity=0.213 Sum_probs=84.8
Q ss_pred chhHHHHHHHhh-cccccEEEecCccccccChhHHHHHHHHHHhC-Cce---ecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022982 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVY---VST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 39 g~~~~~DlLe~a-g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~---v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
...++.++++.+ ..-+..+.|.+|--.+.+ .+.+.++.+++. |+. +.| |++ +++.++..++
T Consensus 91 s~eei~~~i~~~~~~Gv~~I~~tGGEPllr~--dl~eli~~l~~~~gi~~i~itTNG~l-----------L~~~~~~L~~ 157 (373)
T PLN02951 91 SQDEIVRLAGLFVAAGVDKIRLTGGEPTLRK--DIEDICLQLSSLKGLKTLAMTTNGIT-----------LSRKLPRLKE 157 (373)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcchh--hHHHHHHHHHhcCCCceEEEeeCcch-----------HHHHHHHHHh
Confidence 455666666543 234788999999988776 588999999986 653 344 544 2334557788
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.|++.|-||=.+++ -+.+..++.|+.+++.|+. |+-.+.+-.+.
T Consensus 158 aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~------------------------- 212 (373)
T PLN02951 158 AGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGF------------------------- 212 (373)
T ss_pred CCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCC-------------------------
Confidence 99999999966541 1236677889999999984 55444431110
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+.+++.+.++-..+-|+..-.+|=-
T Consensus 213 -N~~Ei~~li~~a~~~gi~vr~ie~m 237 (373)
T PLN02951 213 -NDDEICDFVELTRDKPINVRFIEFM 237 (373)
T ss_pred -CHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 1334445555555688887777764
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.65 Score=43.51 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
+.+.++++++-+.|.+.|=+.-. +..|+.++|.++++.+.+. | +.|. +|+ +
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi--~gv-------~-------------- 78 (280)
T PLN02417 22 EAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVI--GNT-------G-------------- 78 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEE--EEC-------C--------------
Confidence 46888999999999999987544 3489999999999998874 1 1111 122 1
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
..++.+.+++++..-++|||.|++-.-
T Consensus 79 ------~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 79 ------SNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred ------CccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 114788899999999999999999764
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.14 E-value=4.1 Score=38.15 Aligned_cols=143 Identities=13% Similarity=0.188 Sum_probs=92.3
Q ss_pred hHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (289)
..+-+.|..+| ||.+=+|+..+. | ...+-++...+.+.....-+|. . .-.+.++.+.+.|.+.|-+
T Consensus 25 ~~i~~~L~~~G--v~~IEvG~P~~~--~--~~~~~~~~l~~~~~~~~v~~~~-----r---~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 25 IEIAKALDAFG--VDYIELTSPAAS--P--QSRADCEAIAKLGLKAKILTHI-----R---CHMDDARIAVETGVDGVDL 90 (262)
T ss_pred HHHHHHHHHcC--CCEEEEECCCCC--H--HHHHHHHHHHhCCCCCcEEEEe-----c---CCHHHHHHHHHcCcCEEEE
Confidence 45667788888 999999975443 3 2344455554444321112231 2 2234688888899999998
Q ss_pred cCCc--------ccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 121 NVGS--------LEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 121 SdGt--------i~i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
.... ...+.++ -.++|+.+++.|++| .++..+.. + + +++.+.
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v--~~~~eda~-----------r---~----------~~~~l~ 144 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEV--RFSSEDSF-----------R---S----------DLVDLL 144 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEEEeeC-----------C---C----------CHHHHH
Confidence 5432 2333333 456678999999763 44553211 0 1 367788
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+.+++..++||+.| .|.|..|-..++.+.++++.+
T Consensus 145 ~~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 145 RVYRAVDKLGVNRV-----GIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred HHHHHHHHcCCCEE-----EECCcCCCCCHHHHHHHHHHH
Confidence 88888899999966 478889999999998888754
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=91.04 E-value=3.5 Score=38.51 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
+.+.++++++-+.|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ +|+ +
T Consensus 19 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi--~gv-------~-------------- 75 (285)
T TIGR00674 19 AALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVI--AGT-------G-------------- 75 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEE--EeC-------C--------------
Confidence 36788899999999999987322 2689999999999998884 1 1111 122 0
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHH
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVI 225 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~---~G-~~r~d~v~~ii 225 (289)
..+.++.|++++..-++|||.|++=.- -||+. .| .+..+++.+++
T Consensus 76 ------~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~ 149 (285)
T TIGR00674 76 ------SNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLA 149 (285)
T ss_pred ------CccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHH
Confidence 114788899999999999999998752 14543 23 56677888776
Q ss_pred hccCCCceEE--e-cCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCCC
Q 022982 226 GRLGLEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 226 ~~l~~eklif--E-AP~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G~ 276 (289)
+ .+ +++- + .++......+++++++++.+..-.+ -+-+++++.|.-|-
T Consensus 150 ~-~~--~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G~d-~~~~~~~~~G~~G~ 199 (285)
T TIGR00674 150 E-EP--NIVAIKEATGNLERISEIKAIAPDDFVVLSGDD-ALTLPMMALGGKGV 199 (285)
T ss_pred c-CC--CEEEEEeCCCCHHHHHHHHHhcCCCeEEEECch-HHHHHHHHcCCCEE
Confidence 4 33 4443 3 3445666667788877776654433 45578888775554
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=2.8 Score=43.17 Aligned_cols=153 Identities=14% Similarity=0.208 Sum_probs=92.3
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCC-chHHHHHHHHHHcCCCEEEe
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIEL 120 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~-~~~~~yl~~~k~lGF~~IEI 120 (289)
.+-+.|..+| ||.+=.||..+.-...+.+++..++-- .+..++. |. .+...+- ..-+.-++.+.+.|.+.|-+
T Consensus 31 ~ia~~L~~~G--vd~IEvG~p~as~~d~~~~~~i~~~~l-~~~~i~~--~~-~~~~~~i~~~~d~~~e~~~~~g~~~i~i 104 (524)
T PRK12344 31 RIARKLDELG--VDYIEGGWPGSNPKDTEFFKRAKELKL-KHAKLAA--FG-STRRAGVSAEEDPNLQALLDAGTPVVTI 104 (524)
T ss_pred HHHHHHHHcC--CCEEEEcCCcCChhHHHHHHHHHHhCC-CCcEEEE--Ee-eccccCCCcccHHHHHHHHhCCCCEEEE
Confidence 4556677788 899999996544333333333333110 1233322 11 1111110 01245567788999999999
Q ss_pred cCCcccCChh------------HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 121 NVGSLEIPEE------------TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 121 SdGti~i~~~------------~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
...+-++-.+ .-.+.|+.+++.|++|. |+-.+- -| ++ ..|++.++
T Consensus 105 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~--~~~e~~-------~D----a~----------r~d~~~l~ 161 (524)
T PRK12344 105 FGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI--FDAEHF-------FD----GY----------KANPEYAL 161 (524)
T ss_pred EECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--Eccccc-------cc----cc----------cCCHHHHH
Confidence 8765443222 22367888999888752 333100 01 00 11588889
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+.++...++||+.|. |.|..|-..+..+.++++.+
T Consensus 162 ~~~~~~~~~Gad~i~-----l~DTvG~~~P~~v~~li~~l 196 (524)
T PRK12344 162 ATLKAAAEAGADWVV-----LCDTNGGTLPHEVAEIVAEV 196 (524)
T ss_pred HHHHHHHhCCCCeEE-----EccCCCCcCHHHHHHHHHHH
Confidence 999999999999887 88899999988888887654
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.87 E-value=2.2 Score=43.48 Aligned_cols=96 Identities=17% Similarity=0.280 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
-++.|++.+.+.|++.|-|.+..-++ +.-.+.|+.+++.|+.|. ..+-. .. +| ..
T Consensus 96 vv~~fv~~A~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~---t~------------~p-~~----- 150 (467)
T PRK14041 96 VVELFVKKVAEYGLDIIRIFDALNDI--RNLEKSIEVAKKHGAHVQ--GAISY---TV------------SP-VH----- 150 (467)
T ss_pred hhHHHHHHHHHCCcCEEEEEEeCCHH--HHHHHHHHHHHHCCCEEE--EEEEe---cc------------CC-CC-----
Confidence 68899999999999999999877775 345568999999998654 33311 00 11 11
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+++.+++.+++-.++||+.|- |.|..|-..+..+.++++.+
T Consensus 151 -t~e~~~~~a~~l~~~Gad~I~-----i~Dt~G~l~P~~v~~Lv~~l 191 (467)
T PRK14041 151 -TLEYYLEFARELVDMGVDSIC-----IKDMAGLLTPKRAYELVKAL 191 (467)
T ss_pred -CHHHHHHHHHHHHHcCCCEEE-----ECCccCCcCHHHHHHHHHHH
Confidence 478889999999999999764 67888888888887777654
|
|
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=7.5 Score=36.31 Aligned_cols=169 Identities=15% Similarity=0.176 Sum_probs=104.8
Q ss_pred CCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccC--hhHHHHHHHHHHhCCceecC---C-cHH---
Q 022982 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVST---G-DWA--- 92 (289)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p--~~~l~eKI~l~~~~gV~v~~---G-tlf--- 92 (289)
+..|+..++.+|. .+...+..++.+..| +.+..+.|-+...- +..+.+..+++.+..| +.- | .+.
T Consensus 30 ~~~gv~~~~~~~~----~~~~~~~~~~l~~~~-~~v~~~~GiHP~~~~~~~~~~~l~~~~~~~~v-vaIGEiGLD~~~~~ 103 (265)
T PRK10812 30 AARDVKFCLAVAT----TLPGYRHMRDLVGER-DNVVFSCGVHPLNQDEPYDVEELRRLAAEEGV-VAMGETGLDYYYTP 103 (265)
T ss_pred HHcCCCEEEEeCC----CHHHHHHHHHHHhhC-CCeEEEEEeCCCCCCChhHHHHHHHHhcCCCE-EEEEeeecCcCCCC
Confidence 4669999999999 666888889988887 35777888776432 3445555555543333 222 3 232
Q ss_pred -HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022982 93 -EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 93 -E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
....++. -|+..++.++++|...+==+-+.. .+.++.+++.+... .-++-... .| +
T Consensus 104 ~~~~~Q~~--vf~~ql~lA~e~~~Pv~iH~r~a~-------~~~l~iL~~~~~~~--~~~v~H~f--sG---~------- 160 (265)
T PRK10812 104 ETKVRQQE--SFRHHIQIGRELNKPVIVHTRDAR-------ADTLAILREEKVTD--CGGVLHCF--TE---D------- 160 (265)
T ss_pred CCHHHHHH--HHHHHHHHHHHhCCCeEEEeeCch-------HHHHHHHHhhcCCC--CCEEEEee--cC---C-------
Confidence 1233444 799999999999988875444322 25556666544321 11221111 11 1
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 241 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~ 241 (289)
.+++++.++.|.+.=+- |... .-+.+.+.++++.+|+++|+.|...|.
T Consensus 161 ----------------~~~a~~~~~~G~~is~~---g~~t---~~~~~~~~~~~~~ipldrlLlETD~P~ 208 (265)
T PRK10812 161 ----------------RETAGKLLDLGFYISFS---GIVT---FRNAEQLRDAARYVPLDRLLVETDSPY 208 (265)
T ss_pred ----------------HHHHHHHHHCCCEEEEC---eeee---cCccHHHHHHHHhCChhhEEEecCCCC
Confidence 56788888888765443 2211 124567888999999999999987653
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.84 E-value=2 Score=42.44 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh----hHHHHHHHHHHHcCCc
Q 022982 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE----ETLLRYVRLVKSAGLK 145 (289)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~----~~r~~lI~~~~~~G~~ 145 (289)
+.+.+.|+-.++++|.+..+. ++....++.+.+.+.|.|.|.|+-.|.+-.+ .++..+++..++.+..
T Consensus 118 ~l~~~iv~~~~~~~V~v~vr~--------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip 189 (368)
T PRK08649 118 ELITERIAEIRDAGVIVAVSL--------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP 189 (368)
T ss_pred HHHHHHHHHHHhCeEEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC
Confidence 444555555666666554332 3346889999999999999999766554221 1456677777775544
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 146 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 146 v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
|+- |. +. + .+.+++.+++|||.|++ ++
T Consensus 190 VIa--G~------V~-----------t---------------~e~A~~l~~aGAD~V~V-G~ 216 (368)
T PRK08649 190 VIV--GG------CV-----------T---------------YTTALHLMRTGAAGVLV-GI 216 (368)
T ss_pred EEE--eC------CC-----------C---------------HHHHHHHHHcCCCEEEE-CC
Confidence 321 11 10 1 45677778899999999 66
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=90.66 E-value=1.7 Score=40.17 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i--------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
.+.+..+.+.+.|+|+|||+-++-.. ..+.-.++++.+++. . -+| +.+|-...
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~-~~p-v~vKl~~~---------------- 172 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-V-DIP-LLVKLSPY---------------- 172 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-c-CCC-EEEEeCCC----------------
Confidence 56666777788899999998775432 234556788888874 1 112 45553210
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+ +.++.++.++...++|||.|.+-.+
T Consensus 173 --~------~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 173 --F------DLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred --C------CHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 1 3667788999999999999999765
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=90.52 E-value=3.2 Score=39.06 Aligned_cols=87 Identities=22% Similarity=0.275 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC------------------ChhHH----HHHHHHHHHcCCcccceeeeecCCCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEI------------------PEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDI 159 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i------------------~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~ev 159 (289)
.+-+..+.|++.|||.|||.-+.--| +.+.| .++|+.+++. +..-.-+++|....+.
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~-~g~d~~i~vris~~~~ 220 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREA-VGPDFPVGVRLSADDF 220 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHH-cCCCceEEEEechhcc
Confidence 44555566777999999998752111 12344 3555666653 1011135555432110
Q ss_pred CCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 160 PSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 160 g~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
.+..+ +.++.++.++..-++|+++|-+=++
T Consensus 221 ------------~~~g~------~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 221 ------------VPGGL------TLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred ------------CCCCC------CHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 00112 5788899999999999999988655
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=90.43 E-value=4.2 Score=41.53 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=101.2
Q ss_pred ccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022982 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (289)
.+.+-+-..||-++-+ +.+.+-+++++++|..|..+ .|.+..-+++-+.+.++.+.+.|-+.|-+.|
T Consensus 90 ~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~--~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 167 (494)
T TIGR00973 90 KFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFS--CEDAGRTEIPFLARIVEAAINAGATTINIPD 167 (494)
T ss_pred CCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE--cCCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 5666666666665532 33557888999999876655 3444455566788888999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
-.--+.+++-.++|+.++++ +.- ...+++.+ -.|....+-.+...++|||+
T Consensus 168 TvG~~~P~~~~~~i~~l~~~-~~~~~~v~l~~H~--------------------------HND~GlAvANalaAv~aGa~ 220 (494)
T TIGR00973 168 TVGYALPAEYGNLIKGLREN-VPNIDKAILSVHC--------------------------HNDLGLAVANSLAAVQNGAR 220 (494)
T ss_pred CCCCCCHHHHHHHHHHHHHh-hccccCceEEEEe--------------------------CCCCChHHHHHHHHHHhCCC
Confidence 99999999999999999874 110 11244422 11233346777888999999
Q ss_pred EEEEecc--ccccCCCCccHHHHHHHHh
Q 022982 201 MIMIDSD--DVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 201 ~ViiEar--GI~d~~G~~r~d~v~~ii~ 226 (289)
+ ||+- |+=+..||...+.+-..+.
T Consensus 221 ~--vd~tv~GlGERaGNa~le~vv~~L~ 246 (494)
T TIGR00973 221 Q--VECTINGIGERAGNAALEEVVMALK 246 (494)
T ss_pred E--EEEEeecccccccCccHHHHHHHHH
Confidence 5 5775 8888899988877665553
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.43 E-value=3.5 Score=42.07 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=105.4
Q ss_pred HHHHHHHhhcccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHH
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~ 110 (289)
.++..+++ | +|.+-+...+|-++-+ +.+.+-++.++++|..|..+ +|.+...+++-+.++++.+
T Consensus 78 di~~a~~~-g--~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 78 DIDAALEC-D--VDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS--GEDASRADLDFLKELYKAG 152 (488)
T ss_pred HHHHHHhC-C--cCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE--EeeCCCCCHHHHHHHHHHH
Confidence 44444443 3 5778888888776422 34566678999999866542 1334444555677788888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHH
Q 022982 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (289)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 190 (289)
.+.|.+.|-+.|-.--+.+.+-.++|+.+++. +. ..+++.+ .. |...-+-.
T Consensus 153 ~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~-~~--v~l~~H~-HN-------------------------D~GlAvAN 203 (488)
T PRK09389 153 IEAGADRICFCDTVGILTPEKTYELFKRLSEL-VK--GPVSIHC-HN-------------------------DFGLAVAN 203 (488)
T ss_pred HhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh-cC--CeEEEEe-cC-------------------------CccHHHHH
Confidence 99999999999999999999999999999874 22 2344432 11 23334677
Q ss_pred HHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhc
Q 022982 191 AERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 191 ~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~ 227 (289)
+...++|||++ ||+- |+=+..||...+.+-..+..
T Consensus 204 alaAv~aGa~~--Vd~Ti~GiGERaGNa~lE~lv~~L~~ 240 (488)
T PRK09389 204 TLAALAAGADQ--VHVTINGIGERAGNASLEEVVMALKH 240 (488)
T ss_pred HHHHHHcCCCE--EEEEcccccccccCccHHHHHHHHHh
Confidence 88899999996 6775 88899999998877666643
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=90.34 E-value=2 Score=38.84 Aligned_cols=103 Identities=21% Similarity=0.142 Sum_probs=64.1
Q ss_pred CceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec--------------CCc
Q 022982 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--------------TGD 90 (289)
Q Consensus 25 GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~--------------~Gt 90 (289)
++..+.+=|+ . ....++++++. | +|.+ ..|+..+.+++.+++..+.+++..|.++ +=+
T Consensus 71 ~~pv~~~GGI--~-s~~d~~~~l~~-G--~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~ 142 (243)
T cd04731 71 FIPLTVGGGI--R-SLEDARRLLRA-G--ADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHG 142 (243)
T ss_pred CCCEEEeCCC--C-CHHHHHHHHHc-C--CceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcC
Confidence 3455555555 2 45566666663 2 5554 5678888888888888887765445433 212
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHHc
Q 022982 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKSA 142 (289)
Q Consensus 91 lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt----i~i~~~~r~~lI~~~~~~ 142 (289)
|.+. ......++.+.+.+.|++.|.+++=+ ..-+ ..++++++++.
T Consensus 143 ~~~~----~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~~ 191 (243)
T cd04731 143 GRKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY---DLELIRAVSSA 191 (243)
T ss_pred Ccee----cCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC---CHHHHHHHHhh
Confidence 4332 12356788899999999999996522 2222 24667777663
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=2.4 Score=43.31 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+-++.|++.+.+.|+|.+-|-|..-+++. -...|+.+++.|..|..-+.... + |
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~lnd~~n--~~~ai~~ak~~G~~~~~~i~yt~---------s--------p------- 158 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDALNDPRN--IQQALRAVKKTGKEAQLCIAYTT---------S--------P------- 158 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCHHH--HHHHHHHHHHcCCEEEEEEEEEe---------C--------C-------
Confidence 46889999999999999999997775544 45699999999987653333311 1 1
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
.-|.+-+++.++.-.++||+.|- |.|..|-..+..+.++++.+-
T Consensus 159 ~~t~~y~~~~a~~l~~~Gad~I~-----IkDtaG~l~P~~v~~Lv~alk 202 (468)
T PRK12581 159 VHTLNYYLSLVKELVEMGADSIC-----IKDMAGILTPKAAKELVSGIK 202 (468)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHHH
Confidence 01477889999999999999775 678888888888888887653
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=90.30 E-value=1.4 Score=41.03 Aligned_cols=73 Identities=32% Similarity=0.424 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
.+.+..+.+++.|||+|||+=++- --+.+.-.++++.+++. ++ | +.+|...
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~---P-v~vKl~~--------------- 163 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV---P-VIVKLTP--------------- 163 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC---C-EEEEeCC---------------
Confidence 556666777888999999975542 23445556788888875 22 2 4554311
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
+.++..+.++...++|||.|.+
T Consensus 164 -----------~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 164 -----------NVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred -----------CchhHHHHHHHHHHcCCCEEEE
Confidence 1234567778888999998876
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >smart00518 AP2Ec AP endonuclease family 2 | Back alignment and domain information |
|---|
Probab=90.26 E-value=4.2 Score=36.96 Aligned_cols=142 Identities=15% Similarity=0.255 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHcCCcccceeeee-cCCCCCCCccccccccccccC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKAKPKFAVM-FNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~G~~v~~E~g~k-~~~~evg~~~d~~~~~~~~~~ 174 (289)
.+.+.++++.++||+.||+.-+.. .++.+...++.+.+++.|+++.. .+.- .+.+ ..|++
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~-h~p~~~nl~----s~d~~-------- 77 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSV-HAPYLINLA----SPDKE-------- 77 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE-ECCceecCC----CCCHH--------
Confidence 567788999999999999986555 47778888888999999987432 1110 0010 11111
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHH-------HHHHHHhccCCCceEEec-C--------
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRAD-------IIAKVIGRLGLEKTMFEA-T-------- 238 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d-------~v~~ii~~l~~eklifEA-P-------- 238 (289)
.+ ..+.+.+.+.++..-+.||..|.+.+ |-+.. .-+.+ .+.++++.-.--+|.+|. |
T Consensus 78 ~r----~~~~~~l~~~i~~A~~lGa~~vv~h~-g~~~~--~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~ 150 (273)
T smart00518 78 KV----EKSIERLIDEIKRCEELGIKALVFHP-GSYLK--QSKEEALNRIIESLNEVIDETKGVVILLETTAGKGSQIGS 150 (273)
T ss_pred HH----HHHHHHHHHHHHHHHHcCCCEEEEcc-ccccC--CCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCCCccCC
Confidence 01 11245555566666677999999865 32221 11233 333444320112467785 1
Q ss_pred CchhHHHHHHHhC--CCcccccCCCCc
Q 022982 239 NPRTSEWFIRRYG--PKVNLFVDHSQV 263 (289)
Q Consensus 239 ~k~qQ~~~I~~fG--~~VNLgI~~~eV 263 (289)
.+.+-..+++..+ |+|.+.+|+.+.
T Consensus 151 ~~~~~~~ll~~v~~~~~~g~~lD~gH~ 177 (273)
T smart00518 151 TFEDLKEIIDLIKELDRIGVCIDTCHI 177 (273)
T ss_pred CHHHHHHHHHhcCCCCCeEEEEEccch
Confidence 3345778888887 467665655554
|
These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites |
| >cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair | Back alignment and domain information |
|---|
Probab=90.24 E-value=1 Score=41.25 Aligned_cols=144 Identities=15% Similarity=0.301 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
.+++-++.++++||+.||++-+.. ..+.++..++.+.++++ |+.+.. .+.-. ..-. ..|++
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~~~~-~~~~--~~~~~-------- 78 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSV-HAPYL-INLA--SPDKE-------- 78 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEE-EcCce-eccC--CCCHH--------
Confidence 788999999999999999975433 12457777777777887 444321 11100 0000 00100
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecccccc--CCCCccH---HHHHHHHh---ccCCCceEEec---------
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK--HADSLRA---DIIAKVIG---RLGLEKTMFEA--------- 237 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d--~~G~~r~---d~v~~ii~---~l~~eklifEA--------- 237 (289)
......+.+-+.++..-+.||.+|++-.- -+. ....... +.+.++++ ..|+ +|-+|-
T Consensus 79 ----~r~~~~~~~~~~i~~A~~lG~~~v~~~~g-~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi-~l~lEn~~~~~~~~~ 152 (279)
T cd00019 79 ----KREKSIERLKDEIERCEELGIRLLVFHPG-SYLGQSKEEGLKRVIEALNELIDKAETKGV-VIALETMAGQGNEIG 152 (279)
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEECCC-CCCCCCHHHHHHHHHHHHHHHHHhccCCCC-EEEEeCCCCCCCCCC
Confidence 01123455566666666789999888432 111 1111112 33444443 2333 466664
Q ss_pred CCchhHHHHHHHhC--CCcccccCCCCc
Q 022982 238 TNPRTSEWFIRRYG--PKVNLFVDHSQV 263 (289)
Q Consensus 238 P~k~qQ~~~I~~fG--~~VNLgI~~~eV 263 (289)
+...+-..+|+..| |+|.+-.|+.+.
T Consensus 153 ~t~~~~~~li~~v~~~~~~g~~lD~~h~ 180 (279)
T cd00019 153 SSFEELKEIIDLIKEKPRVGVCIDTCHI 180 (279)
T ss_pred CCHHHHHHHHHhcCCCCCeEEEEEhhhH
Confidence 22344577999997 777665555554
|
Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar. |
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=90.22 E-value=1.8 Score=42.49 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=60.3
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHH
Q 022982 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (289)
+.+++-|.++|-|-+|+ ..+...|+.+.+.|.-|.-.+|..-. + +..++.+-. .-...+...++
T Consensus 121 rl~~eaGa~aVKlEGg~-----~~~~~~I~~l~~~GIPV~gHiGLtPQ-s------~~~lGGykv----qGr~~~~a~~l 184 (332)
T PLN02424 121 RMLKEGGMDAVKLEGGS-----PSRVTAAKAIVEAGIAVMGHVGLTPQ-A------ISVLGGFRP----QGRTAESAVKV 184 (332)
T ss_pred HHHHHhCCcEEEECCCc-----HHHHHHHHHHHHcCCCEEEeecccce-e------ehhhcCccc----cCCCHHHHHHH
Confidence 44477899999999997 56789999999999999999998432 1 111111100 00001236789
Q ss_pred HHHHHHHHHccCcEEEEec
Q 022982 188 IRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEa 206 (289)
++.++..-+|||+.|.+|+
T Consensus 185 i~dA~ale~AGAf~ivLE~ 203 (332)
T PLN02424 185 VETALALQEAGCFAVVLEC 203 (332)
T ss_pred HHHHHHHHHcCCcEEEEcC
Confidence 9999999999999999998
|
|
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=90.15 E-value=4.5 Score=38.58 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=73.9
Q ss_pred chhHHHHHHHhhc-ccccEEEecCccccccChhHHHHHHHHHHhCCceecC--CcHHHHHHHh---CCchHHHHHHHHHH
Q 022982 39 SHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRN---GPSAFKEYVEDCKQ 112 (289)
Q Consensus 39 g~~~~~DlLe~ag-~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--GtlfE~a~~q---g~~~~~~yl~~~k~ 112 (289)
.+.++.+.++.+. .-++-+=|.+|.....+.+.+.+.++..++++..+.. =+..|+.... | -..++-++.+|+
T Consensus 73 s~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g-~~~~e~l~~Lk~ 151 (340)
T TIGR03699 73 SVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEG-LSLREVLERLKE 151 (340)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCC-CCHHHHHHHHHH
Confidence 4445444443222 2266777777877777888889999999987643332 2566664332 3 124899999999
Q ss_pred cCCCEEEe-----c-CCcc------cCChhHHHHHHHHHHHcCCccccee
Q 022982 113 VGFDTIEL-----N-VGSL------EIPEETLLRYVRLVKSAGLKAKPKF 150 (289)
Q Consensus 113 lGF~~IEI-----S-dGti------~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (289)
.|++.+-- . +-+. ..+.+++.+.|+.+++.|+++.+-+
T Consensus 152 aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 152 AGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATM 201 (340)
T ss_pred cCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccee
Confidence 99987641 1 1111 3488899999999999999977643
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=90.05 E-value=1.6 Score=42.28 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=53.8
Q ss_pred hhHHHHHHHhhcccccEEEecCcccc------ccChhHHHHHHHHHHhC-C-----ceec----CCcHHHHHHHhCCchH
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH-D-----VYVS----TGDWAEHLIRNGPSAF 103 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~-g-----V~v~----~GtlfE~a~~qg~~~~ 103 (289)
...+..+++.+++|.|++=+-++|-. ...++.+.+.++-.++. + ++|. |+. .. +.+
T Consensus 156 ~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~------~~--~~~ 227 (344)
T PRK05286 156 VDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDL------SD--EEL 227 (344)
T ss_pred HHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCC------CH--HHH
Confidence 45777888888889999888775543 33445566666666652 2 4333 330 01 146
Q ss_pred HHHHHHHHHcCCCEEEecCCccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLE 126 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~ 126 (289)
.+..+.|.+.|.|.|.+++++.+
T Consensus 228 ~~ia~~l~~~Gadgi~~~nt~~~ 250 (344)
T PRK05286 228 DDIADLALEHGIDGVIATNTTLS 250 (344)
T ss_pred HHHHHHHHHhCCcEEEEeCCccc
Confidence 77888889999999999999854
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=90.01 E-value=2.6 Score=37.55 Aligned_cols=108 Identities=17% Similarity=0.258 Sum_probs=63.3
Q ss_pred HHhhcccccEEEecCccccccChhHHHHHHHHHHhCC-ceecCCcHHHHHHHhCC-chHHHHHHHHHHcCCCEEEecCCc
Q 022982 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIELNVGS 124 (289)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V~v~~GtlfE~a~~qg~-~~~~~yl~~~k~lGF~~IEISdGt 124 (289)
+..+| ++.++ ++-.+ +.+.+.+.++..+++- .++.-+.++ ..+ ...+++++.|++.|.+.|.++++
T Consensus 22 ~~~~G-~ig~i----~~~~~-~~~~~~~~~~~i~~~~~~~~~v~~i~-----~~~~~~~~~~~~~~~~~g~d~v~l~~~- 89 (236)
T cd04730 22 VSNAG-GLGFI----GAGYL-TPEALRAEIRKIRALTDKPFGVNLLV-----PSSNPDFEALLEVALEEGVPVVSFSFG- 89 (236)
T ss_pred HHhCC-Ccccc----CCCCC-CHHHHHHHHHHHHHhcCCCeEEeEec-----CCCCcCHHHHHHHHHhCCCCEEEEcCC-
Confidence 33444 56665 22333 4455666677666542 211111111 111 26889999999999999999988
Q ss_pred ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 125 i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
.+ .++++.+++.++.+. .+-. + .+++++..++||++|++
T Consensus 90 --~~----~~~~~~~~~~~i~~i----~~v~---------------------------~----~~~~~~~~~~gad~i~~ 128 (236)
T cd04730 90 --PP----AEVVERLKAAGIKVI----PTVT---------------------------S----VEEARKAEAAGADALVA 128 (236)
T ss_pred --CC----HHHHHHHHHcCCEEE----EeCC---------------------------C----HHHHHHHHHcCCCEEEE
Confidence 22 346666776655432 2100 1 24456667899999999
Q ss_pred ecc
Q 022982 205 DSD 207 (289)
Q Consensus 205 Ear 207 (289)
.+.
T Consensus 129 ~~~ 131 (236)
T cd04730 129 QGA 131 (236)
T ss_pred eCc
Confidence 886
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=89.94 E-value=2.3 Score=40.46 Aligned_cols=134 Identities=19% Similarity=0.240 Sum_probs=77.8
Q ss_pred hhHHHHHHHhhccc-ccEEEec------------CccccccChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCch
Q 022982 40 HNVLEDIFESMGQF-VDGLKFS------------GGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSA 102 (289)
Q Consensus 40 ~~~~~DlLe~ag~y-ID~lKfg------------~GTs~l~p~~~l~eKI~l~~~~-gV~v~~---GtlfE~a~~qg~~~ 102 (289)
+..+.+..+.+-++ .|.+=+- .|+..+-.++.+.+.++-.++. ++++.- +||-+ +...
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-----~~~~ 148 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-----AHIN 148 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC-----Ccch
Confidence 34444444443333 5666553 3444555677888888877653 554432 34532 2124
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
..++.+.+.+.|.+.|-|+..+.. .+..-..++++.+++. .. +|=++. ++
T Consensus 149 ~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~-ipvi~n----------Gg---------------- 200 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQA-VR-IPVIGN----------GD---------------- 200 (319)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHc-CC-CcEEEe----------CC----------------
Confidence 678889999999999999865432 2212235788888773 11 121111 11
Q ss_pred cccHHHHHHHHHHHH-HccCcEEEEecccccc
Q 022982 181 VEDVDLLIRRAERCL-EAGADMIMIDSDDVCK 211 (289)
Q Consensus 181 ~~~~~~~I~~~~~dL-eAGA~~ViiEarGI~d 211 (289)
+.|+ +.+.+.| +.|||.||+ ||+++.
T Consensus 201 I~~~----~da~~~l~~~gad~Vmi-gR~~l~ 227 (319)
T TIGR00737 201 IFSP----EDAKAMLETTGCDGVMI-GRGALG 227 (319)
T ss_pred CCCH----HHHHHHHHhhCCCEEEE-Chhhhh
Confidence 1123 4455556 579999999 888764
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=7.6 Score=36.63 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=80.8
Q ss_pred hcccccEEEecCccccccChhHHHHHHHHHHhCCc--eecCCc---HHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCC
Q 022982 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGD---WAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVG 123 (289)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~Gt---lfE~a~~qg~~~~~~yl~~~k~lGF~-~IEISdG 123 (289)
+.+++|++|+|-++..=+| .|++- -+.|. .+..|+ +-|..-+ .+.++.-|-. .+=+--|
T Consensus 107 l~~~vd~~kIga~~~~n~~--LL~~~----a~~gkPV~lk~G~~~s~~e~~~A---------~e~i~~~Gn~~i~L~~rG 171 (266)
T PRK13398 107 VADYADMLQIGSRNMQNFE--LLKEV----GKTKKPILLKRGMSATLEEWLYA---------AEYIMSEGNENVVLCERG 171 (266)
T ss_pred HHHhCCEEEECcccccCHH--HHHHH----hcCCCcEEEeCCCCCCHHHHHHH---------HHHHHhcCCCeEEEEECC
Confidence 3478999999977654433 44443 34555 444573 3332211 2334555553 2223333
Q ss_pred cccC----ChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc
Q 022982 124 SLEI----PEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (289)
Q Consensus 124 ti~i----~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG 198 (289)
+-+. +..--++.|..+++. ++ | +++- +...+| ..+.....+...+.+|
T Consensus 172 ~~t~~~Y~~~~vdl~~i~~lk~~~~~---p-V~~D-~sHs~G----------------------~~~~v~~~~~aAva~G 224 (266)
T PRK13398 172 IRTFETYTRNTLDLAAVAVIKELSHL---P-IIVD-PSHATG----------------------RRELVIPMAKAAIAAG 224 (266)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCC---C-EEEe-CCCccc----------------------chhhHHHHHHHHHHcC
Confidence 3111 334455677777764 32 2 5552 112222 1344577889999999
Q ss_pred CcEEEEecc-----ccccCCCCccHHHHHHHHhcc
Q 022982 199 ADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 199 A~~ViiEar-----GI~d~~G~~r~d~v~~ii~~l 228 (289)
|+-+|||.- -+.|..-.+..+.+.++++.+
T Consensus 225 a~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i 259 (266)
T PRK13398 225 ADGLMIEVHPEPEKALSDARQTLNFEEMKELVDEL 259 (266)
T ss_pred CCEEEEeccCCccccCCchhhcCCHHHHHHHHHHH
Confidence 999999983 678999999999999998754
|
|
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.85 E-value=1.4 Score=42.28 Aligned_cols=117 Identities=24% Similarity=0.404 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCCceec------CCc-HHHH-HHHhCCchHHHHHHHHHHcCC-CEEEecCCcccCChhHHHHHHHHHHHc
Q 022982 72 IEEVVKRAHQHDVYVS------TGD-WAEH-LIRNGPSAFKEYVEDCKQVGF-DTIELNVGSLEIPEETLLRYVRLVKSA 142 (289)
Q Consensus 72 l~eKI~l~~~~gV~v~------~Gt-lfE~-a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (289)
.++.++.+++.++.+. ||. +||. |+.-|. ... +++|. |+|=|.|.-+.+-- ...+.|+++++.
T Consensus 113 T~~~V~~~~~~~~~i~~TRKT~PglR~leKyAV~~GG-G~n------HR~gLsDavliKDNHia~~g-~i~~Av~~aR~~ 184 (280)
T COG0157 113 TARMVEALRGTNVRIADTRKTTPGLRLLEKYAVRAGG-GDN------HRFGLSDAVLIKDNHIAAAG-SITEAVRRARAA 184 (280)
T ss_pred HHHHHHHhhccCcEEEeccCCCccHHHHHHHHHHhcC-Ccc------ccCCCcceEEehhhHHHHhc-cHHHHHHHHHHh
Confidence 4567888899997553 573 6664 444441 222 45554 68889998888777 556899999886
Q ss_pred -CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHH
Q 022982 143 -GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADII 221 (289)
Q Consensus 143 -G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v 221 (289)
+|.++=|+=+.+ .+++++.++||||.||. .|+..+.+
T Consensus 185 ~~~~~kIEVEves---------------------------------le~~~eAl~agaDiImL---------DNm~~e~~ 222 (280)
T COG0157 185 APFTKKIEVEVES---------------------------------LEEAEEALEAGADIIML---------DNMSPEEL 222 (280)
T ss_pred CCCCceEEEEcCC---------------------------------HHHHHHHHHcCCCEEEe---------cCCCHHHH
Confidence 666666666611 57888899999999999 47788888
Q ss_pred HHHHhccC-CCceEEecC
Q 022982 222 AKVIGRLG-LEKTMFEAT 238 (289)
Q Consensus 222 ~~ii~~l~-~eklifEAP 238 (289)
.+.++.++ ..+++-||.
T Consensus 223 ~~av~~l~~~~~~~lEaS 240 (280)
T COG0157 223 KEAVKLLGLAGRALLEAS 240 (280)
T ss_pred HHHHHHhccCCceEEEEe
Confidence 88887766 567888887
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.64 Score=43.78 Aligned_cols=77 Identities=22% Similarity=0.301 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC----------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIP----------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~----------~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
...++++.+.+.|.|.|+||.|+..-+ ......+++.+++. +++ +..-+| .+.
T Consensus 229 e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~-------~~i--PVi~~G--------gi~ 291 (327)
T cd02803 229 EAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA-------VKI--PVIAVG--------GIR 291 (327)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH-------CCC--CEEEeC--------CCC
Confidence 456778888899999999999986432 23445677777763 211 111011 111
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHc-cCcEEEEecccccc
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEA-GADMIMIDSDDVCK 211 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeA-GA~~ViiEarGI~d 211 (289)
+ .+.+++.|++ |||.|.+ +|.++.
T Consensus 292 -----------t----~~~a~~~l~~g~aD~V~i-gR~~la 316 (327)
T cd02803 292 -----------D----PEVAEEILAEGKADLVAL-GRALLA 316 (327)
T ss_pred -----------C----HHHHHHHHHCCCCCeeee-cHHHHh
Confidence 1 4567777888 7999998 676543
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.69 E-value=13 Score=35.03 Aligned_cols=170 Identities=21% Similarity=0.244 Sum_probs=113.5
Q ss_pred CCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCcccccc--C--hhHHHHHHHHHHh-CCceecC--C-cH
Q 022982 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM--P--KPFIEEVVKRAHQ-HDVYVST--G-DW 91 (289)
Q Consensus 20 KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~--p--~~~l~eKI~l~~~-~gV~v~~--G-tl 91 (289)
+-+..|++.+...|. .+..+...++.|..|= .+-.+.|.+... . ++.+.+..+++.+ ..|..-+ | .+
T Consensus 25 ~a~~~gv~~~~~~g~----~~~~~~~~~~la~~y~-~v~~~~G~HP~~~~~~~~~~~~~l~~~~~~~~~vvaIGEiGLDy 99 (256)
T COG0084 25 RAREAGVKKMVVVGT----DLEDFKRALELAEKYP-NVYAAVGVHPLDADEHSEEDLEELEQLAEHHPKVVAIGEIGLDY 99 (256)
T ss_pred HHHHcCCcEEEEeec----CHHHHHHHHHHHHhCC-CeEEEEeeCCCccccccHHHHHHHHHHHhcCCCeEEEEecccCc
Confidence 456779999999999 5558888888888886 888899988877 4 5567777777765 4443322 4 21
Q ss_pred -H----HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 022982 92 -A----EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (289)
Q Consensus 92 -f----E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~ 166 (289)
. +.-.++- .|..+++.+++++...|==+-+ ....+++.+++.+. +--|+-...+ +
T Consensus 100 ~~~~~~~~~~Q~~--~F~~ql~lA~~~~lPviIH~R~-------A~~d~~~iL~~~~~---~~~gi~HcFs-----G--- 159 (256)
T COG0084 100 YWDKEPDKERQEE--VFEAQLELAKELNLPVIIHTRD-------AHEDTLEILKEEGA---PVGGVLHCFS-----G--- 159 (256)
T ss_pred cccccccHHHHHH--HHHHHHHHHHHcCCCEEEEccc-------cHHHHHHHHHhcCC---CCCEEEEccC-----C---
Confidence 1 3444555 7999999999999877654443 23356666666544 1223422221 1
Q ss_pred cccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCc
Q 022982 167 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (289)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k 240 (289)
. ++++++.++.| .+|=+=+- |+..+ ...+.+++..+|+++|+.|..-|
T Consensus 160 --------------s------~e~a~~~~d~G-~yisisG~-itfk~----a~~~~ev~~~iPldrLL~ETDsP 207 (256)
T COG0084 160 --------------S------AEEARKLLDLG-FYISISGI-VTFKN----AEKLREVARELPLDRLLLETDAP 207 (256)
T ss_pred --------------C------HHHHHHHHHcC-eEEEECce-eecCC----cHHHHHHHHhCCHhHeEeccCCC
Confidence 1 68999999999 44433222 44443 34578899999999999996533
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=89.66 E-value=2.5 Score=37.65 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=17.8
Q ss_pred HHHHHHHHHccCcEEEEeccccccCC
Q 022982 188 IRRAERCLEAGADMIMIDSDDVCKHA 213 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEarGI~d~~ 213 (289)
.+.+++.+++||+-|+|=+ .|++..
T Consensus 184 ~edi~~~~~~Ga~gvivGs-ai~~~~ 208 (217)
T cd00331 184 PEDVKRLAEAGADAVLIGE-SLMRAP 208 (217)
T ss_pred HHHHHHHHHcCCCEEEECH-HHcCCC
Confidence 3566777889999999844 366544
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=89.41 E-value=18 Score=33.69 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=104.4
Q ss_pred chhHHHHHHH-hhcccccEEEecCccc---------------ccc---ChhHHHHHHHHHHh--CCceecCC-cHHHHHH
Q 022982 39 SHNVLEDIFE-SMGQFVDGLKFSGGSH---------------SLM---PKPFIEEVVKRAHQ--HDVYVSTG-DWAEHLI 96 (289)
Q Consensus 39 g~~~~~DlLe-~ag~yID~lKfg~GTs---------------~l~---p~~~l~eKI~l~~~--~gV~v~~G-tlfE~a~ 96 (289)
.+..+.+++. ..-.-+|++=+|+=.| +|- .-+.+-+-++-.++ .++++. - +...-.+
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~ 100 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIF 100 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHh
Confidence 4445555444 3345699999997321 110 00122233444443 355544 3 5566666
Q ss_pred HhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 97 RNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 97 ~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
.. .+++|++.|++.|++.|=|=| +|.++..++++.++++|+.+.+=+.- .
T Consensus 101 ~~---G~e~f~~~~~~aGvdgviipD----lp~ee~~~~~~~~~~~gl~~i~lv~P---------------------~-- 150 (256)
T TIGR00262 101 RK---GVEEFYAKCKEVGVDGVLVAD----LPLEESGDLVEAAKKHGVKPIFLVAP---------------------N-- 150 (256)
T ss_pred hh---hHHHHHHHHHHcCCCEEEECC----CChHHHHHHHHHHHHCCCcEEEEECC---------------------C--
Confidence 66 489999999999999998875 57788899999999998875432222 0
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHH---HHHhccCCCceEEecCCc-hhHHHHHHHhCC
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIA---KVIGRLGLEKTMFEATNP-RTSEWFIRRYGP 252 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~---~ii~~l~~eklifEAP~k-~qQ~~~I~~fG~ 252 (289)
++.++++.+.+. ..|--++|- ..|++........++.+ ++-+..+ ..|+.+-=-+ ..|..-+..+|.
T Consensus 151 ------T~~eri~~i~~~-~~gfiy~vs-~~G~TG~~~~~~~~~~~~i~~lr~~~~-~pi~vgfGI~~~e~~~~~~~~GA 221 (256)
T TIGR00262 151 ------ADDERLKQIAEK-SQGFVYLVS-RAGVTGARNRAASALNELVKRLKAYSA-KPVLVGFGISKPEQVKQAIDAGA 221 (256)
T ss_pred ------CCHHHHHHHHHh-CCCCEEEEE-CCCCCCCcccCChhHHHHHHHHHhhcC-CCEEEeCCCCCHHHHHHHHHcCC
Confidence 133344444432 344555544 23777665555555333 2223223 2577776655 678888888888
Q ss_pred Cc
Q 022982 253 KV 254 (289)
Q Consensus 253 ~V 254 (289)
|.
T Consensus 222 Dg 223 (256)
T TIGR00262 222 DG 223 (256)
T ss_pred CE
Confidence 73
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=89.35 E-value=2.2 Score=45.08 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=99.5
Q ss_pred EEEecCccccccChh-----------HHHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 022982 56 GLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (289)
Q Consensus 56 ~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (289)
.+-+-..||-++-+. .+++-+++++++|. .|..+ .|.+..-+++.+.++++.+.+.|.+.|=|.|-
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs--~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DT 262 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFS--PEDAGRSDPEFLYRILGEVIKAGATTLNIPDT 262 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEe--cccCCCCCHHHHHHHHHHHHHcCCCEEEeccc
Confidence 355555666554322 36678889999987 34444 34444555668889999999999999999999
Q ss_pred cccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcE
Q 022982 124 SLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (289)
Q Consensus 124 ti~i~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ 201 (289)
.--+.+.+-.++|+.++++ +.. ...+++.+ -.|....+-.....++|||+.
T Consensus 263 vG~~~P~~v~~li~~l~~~-~~~~~~v~i~vH~--------------------------HND~GlAvANslaAv~AGA~~ 315 (632)
T PLN02321 263 VGYTLPSEFGQLIADIKAN-TPGIENVIISTHC--------------------------QNDLGLSTANTLAGAHAGARQ 315 (632)
T ss_pred ccCCCHHHHHHHHHHHHHh-cCCCCCceEEEEe--------------------------CCCCCHHHHHHHHHHHhCCCE
Confidence 9999999999999999874 111 11234432 123344467777789999998
Q ss_pred EEEecc--ccccCCCCccHHHHHHHHhc
Q 022982 202 IMIDSD--DVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 202 ViiEar--GI~d~~G~~r~d~v~~ii~~ 227 (289)
| |+- ||=+..||...+.+-..+..
T Consensus 316 V--d~TinGlGERaGNa~LEevv~~L~~ 341 (632)
T PLN02321 316 V--EVTINGIGERAGNASLEEVVMAIKC 341 (632)
T ss_pred E--EEecccccccccCccHHHHHHHHHh
Confidence 4 775 88899999998877766654
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=89.29 E-value=4.6 Score=38.15 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=40.3
Q ss_pred ccccccChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 022982 62 GSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (289)
Q Consensus 62 GTs~l~p~~~l~eKI~l~~~~-gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (289)
|......++.+.+.++..++. ++++.- -+. +.+.+.++.+.|.+.|.+.|=++|-+..
T Consensus 146 G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~-------~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 146 GAAVGQDPELVEEICRWVREAVKIPVIAKLTP-------NITDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred chhhccCHHHHHHHHHHHHHhcCCCeEEECCC-------CchhHHHHHHHHHHcCCCEEEEeccccc
Confidence 445557788899999888764 555443 111 1125778888899999999998886643
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=89.11 E-value=3.5 Score=38.16 Aligned_cols=140 Identities=23% Similarity=0.337 Sum_probs=87.8
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcC----C
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG----F 115 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lG----F 115 (289)
.+-+.|..+| ||.+=+|+.. .-|.+. +.++.+++. ++.+. .| .+. -.+.++.+.+.| +
T Consensus 24 ~i~~~L~~~G--v~~iEvg~~~--~~~~~~--~~~~~l~~~~~~~~~~--~l-----~r~---~~~~v~~a~~~~~~~~~ 87 (268)
T cd07940 24 EIARQLDELG--VDVIEAGFPA--ASPGDF--EAVKRIAREVLNAEIC--GL-----ARA---VKKDIDAAAEALKPAKV 87 (268)
T ss_pred HHHHHHHHcC--CCEEEEeCCC--CCHHHH--HHHHHHHHhCCCCEEE--EE-----ccC---CHhhHHHHHHhCCCCCC
Confidence 4445566677 7788887533 233332 555555543 33222 11 121 133345555556 9
Q ss_pred CEEEecCCccc--------CCh----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 116 DTIELNVGSLE--------IPE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 116 ~~IEISdGti~--------i~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
+.|-+....-+ .+. +.-.+.|+.+++.|++|. |+..+. . ..|
T Consensus 88 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~---------~---------------~~~ 141 (268)
T cd07940 88 DRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE--FSAEDA---------T---------------RTD 141 (268)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EeeecC---------C---------------CCC
Confidence 99999775422 222 344578899999998754 443221 0 015
Q ss_pred HHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
++.+.+.+++..++||+.| .|.|..|...++.+.++++.+
T Consensus 142 ~~~~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 142 LDFLIEVVEAAIEAGATTI-----NIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred HHHHHHHHHHHHHcCCCEE-----EECCCCCCCCHHHHHHHHHHH
Confidence 8888999999999999876 578999999999999888744
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=89.11 E-value=13 Score=33.00 Aligned_cols=124 Identities=16% Similarity=0.164 Sum_probs=78.4
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 022982 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162 (289)
Q Consensus 83 gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~ 162 (289)
+|++-.+++ .. -...++.|.+.|.|.|=+..- .++.++-.++++.++..|+.+..++.-
T Consensus 72 ~iPi~~~~~-----i~----~~~~v~~~~~~Gad~v~l~~~--~~~~~~~~~~~~~~~~~g~~~~v~v~~---------- 130 (217)
T cd00331 72 SLPVLRKDF-----II----DPYQIYEARAAGADAVLLIVA--ALDDEQLKELYELARELGMEVLVEVHD---------- 130 (217)
T ss_pred CCCEEECCe-----ec----CHHHHHHHHHcCCCEEEEeec--cCCHHHHHHHHHHHHHcCCeEEEEECC----------
Confidence 777776551 11 124789999999999998544 455677778999998877776444421
Q ss_pred cccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCC-CceEEecCCch
Q 022982 163 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL-EKTMFEATNPR 241 (289)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~-eklifEAP~k~ 241 (289)
.+++++.+++|+++|.+=++..... ....+.+.++.+.++. -.++-+.=-.+
T Consensus 131 -------------------------~~e~~~~~~~g~~~i~~t~~~~~~~--~~~~~~~~~l~~~~~~~~pvia~gGI~s 183 (217)
T cd00331 131 -------------------------EEELERALALGAKIIGINNRDLKTF--EVDLNTTERLAPLIPKDVILVSESGIST 183 (217)
T ss_pred -------------------------HHHHHHHHHcCCCEEEEeCCCcccc--CcCHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence 2447778889999998776532211 2334667777766642 24555554433
Q ss_pred -hHHHHHHHhCCCc
Q 022982 242 -TSEWFIRRYGPKV 254 (289)
Q Consensus 242 -qQ~~~I~~fG~~V 254 (289)
.+..-+...|.+.
T Consensus 184 ~edi~~~~~~Ga~g 197 (217)
T cd00331 184 PEDVKRLAEAGADA 197 (217)
T ss_pred HHHHHHHHHcCCCE
Confidence 5555566666543
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK11449 putative deoxyribonuclease YjjV; Provisional | Back alignment and domain information |
|---|
Probab=89.02 E-value=19 Score=33.51 Aligned_cols=167 Identities=17% Similarity=0.214 Sum_probs=102.9
Q ss_pred CCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCcccccc----ChhHHHHHHHHHHhC--Cceec--CC-cHH
Q 022982 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM----PKPFIEEVVKRAHQH--DVYVS--TG-DWA 92 (289)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~----p~~~l~eKI~l~~~~--gV~v~--~G-tlf 92 (289)
+..|++.++.+|. .++..+..++.+..|-. +..+.|-+.-. +.+.+.+..+++..+ .|.-- .| .++
T Consensus 29 ~~~gv~~~~~~~~----~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~ 103 (258)
T PRK11449 29 AQAGVGKIIVPAT----EAENFARVLALAERYQP-LYAALGLHPGMLEKHSDVSLDQLQQALERRPAKVVAVGEIGLDLF 103 (258)
T ss_pred HHCCCCEEEEeeC----CHHHHHHHHHHHHhCCC-EEEEEeeCcCccccCCHHHHHHHHHHHHhCCCCEEEEEecccCCC
Confidence 3669999999998 66688889999888864 66777776532 233455555455433 22111 13 222
Q ss_pred --H--HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022982 93 --E--HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (289)
Q Consensus 93 --E--~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 168 (289)
+ ...++. -|++.++.|++++...+==+-+ .. .++++.+++.+... -++=...+ +
T Consensus 104 ~~~~~~~~Q~~--vf~~ql~lA~~~~~Pv~iH~r~----a~---~~~~~il~~~~~~~---~~i~H~fs-----G----- 161 (258)
T PRK11449 104 GDDPQFERQQW--LLDEQLKLAKRYDLPVILHSRR----TH---DKLAMHLKRHDLPR---TGVVHGFS-----G----- 161 (258)
T ss_pred CCCCCHHHHHH--HHHHHHHHHHHhCCCEEEEecC----cc---HHHHHHHHhcCCCC---CeEEEcCC-----C-----
Confidence 1 122333 7999999999999998855554 22 24555566654321 12211111 1
Q ss_pred cccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccc-cccCCCCccHHHHHHHHhccCCCceEEecCCc
Q 022982 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD-VCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarG-I~d~~G~~r~d~v~~ii~~l~~eklifEAP~k 240 (289)
. .+++++.++.|.+. =+ -| ++.+ +.+.+.++++.+|+++|++|..-|
T Consensus 162 ------------~------~~~a~~~l~~G~~i-S~--~g~it~~----~~~~~~~~~~~ipldriL~ETD~P 209 (258)
T PRK11449 162 ------------S------LQQAERFVQLGYKI-GV--GGTITYP----RASKTRDVIAKLPLASLLLETDAP 209 (258)
T ss_pred ------------C------HHHHHHHHHCCCEE-Ee--Ccccccc----CcHHHHHHHHhCChhhEEEecCCC
Confidence 1 57888999999763 11 12 2222 335678899999999999998766
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=89.01 E-value=3.5 Score=46.31 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.+++|++.+.+.|+|.+-|.|..-++ +.....|+.+++.|..+...++.. .++ .|+ ... .
T Consensus 628 v~~~~i~~a~~~Gid~~rifd~lnd~--~~~~~~i~~vk~~g~~~~~~i~yt---g~~---~d~--------~~~----~ 687 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIFDSLNWV--ENMRVAIDAVRETGKIAEAAICYT---GDI---LDP--------ARA----K 687 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCChH--HHHHHHHHHHHHcCCeEEEEEEEE---ecC---CCC--------CCC----C
Confidence 57789999999999999999988886 446678999999988655555542 110 121 110 1
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
-|++.+++.++.-.++||+.|- |.|..|-..+..+.++++.+
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i~-----ikDt~G~l~P~~~~~lv~~l 729 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHILA-----IKDMAGLLKPAAAYELVSAL 729 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-----ECCccCCCCHHHHHHHHHHH
Confidence 1688999999999999999664 67888888888887777654
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.91 E-value=4 Score=36.13 Aligned_cols=101 Identities=22% Similarity=0.255 Sum_probs=56.4
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~ 166 (289)
|+.+.+..+.+++.|||.|||+-|+- .=..+.-.++|+.+++. .. .-+.+|...+
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-~~--~~v~vk~r~~--------- 133 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-VP--IPVTVKIRLG--------- 133 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-cC--CCEEEEEeec---------
Confidence 34555666677888999999997651 12333345667777653 10 1244543211
Q ss_pred cccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecccccc-CCCCccHHHHHHHHh
Q 022982 167 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIG 226 (289)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d-~~G~~r~d~v~~ii~ 226 (289)
|. +.++.++.++..-++|+++|.+-++.-.. ..+....+.+.++.+
T Consensus 134 ---------~~-----~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~ 180 (231)
T cd02801 134 ---------WD-----DEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKE 180 (231)
T ss_pred ---------cC-----CchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHh
Confidence 10 01355677777778999999997762111 122234455555544
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.89 E-value=2.8 Score=40.40 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----------CChhHHHHH
Q 022982 70 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----------IPEETLLRY 135 (289)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----------i~~~~r~~l 135 (289)
+.+..-=++...-+++|.- .||-| + . .+-+.++.+.+.|.-.|-|-|-... +|.++-++-
T Consensus 65 e~~~~vrrI~~a~~lPv~vD~dtGfG~-~--~---nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~r 138 (289)
T COG2513 65 EVLADARRITDAVDLPVLVDIDTGFGE-A--L---NVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDR 138 (289)
T ss_pred HHHHHHHHHHhhcCCceEEeccCCCCc-H--H---HHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHH
Confidence 3455555556666776664 25665 2 1 5678888999999999888776664 888888888
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCC
Q 022982 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS 215 (289)
Q Consensus 136 I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~ 215 (289)
|+-+++. ...+.|-+-- .-|. + ...-.++.|++++..+|||||.|-+|+. .
T Consensus 139 IkAa~~a--~~~~~fvi~A-------RTda----------~---~~~~ld~AI~Ra~AY~eAGAD~if~~al------~- 189 (289)
T COG2513 139 IKAAVEA--RRDPDFVIIA-------RTDA----------L---LVEGLDDAIERAQAYVEAGADAIFPEAL------T- 189 (289)
T ss_pred HHHHHHh--ccCCCeEEEe-------ehHH----------H---HhccHHHHHHHHHHHHHcCCcEEccccC------C-
Confidence 8888874 2224555411 1111 1 1122688999999999999999999986 1
Q ss_pred ccHHHHHHHHhccC
Q 022982 216 LRADIIAKVIGRLG 229 (289)
Q Consensus 216 ~r~d~v~~ii~~l~ 229 (289)
..+.+.++.+.++
T Consensus 190 -~~e~i~~f~~av~ 202 (289)
T COG2513 190 -DLEEIRAFAEAVP 202 (289)
T ss_pred -CHHHHHHHHHhcC
Confidence 1555666666555
|
|
| >cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases | Back alignment and domain information |
|---|
Probab=88.71 E-value=9.2 Score=37.70 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=85.6
Q ss_pred HHHHHHHHhCCceecC----C-c----HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHH
Q 022982 73 EEVVKRAHQHDVYVST----G-D----WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLV 139 (289)
Q Consensus 73 ~eKI~l~~~~gV~v~~----G-t----lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~ 139 (289)
.--..+++++.|+|+. | + |||.++.- +.+++..|.+.||+.|=+..-. +|.++=. ++++++
T Consensus 77 ~~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a----~~~~~~~a~~~GftSVMiDgS~--lp~eENI~~TkevVe~A 150 (345)
T cd00946 77 HHVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEA----DEEYFKQHGEPLFSSHMLDLSE--EPLEENIEICKKYLERM 150 (345)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCccchhhHHHHHH----HHHHHHHhccCCCceEEeeCCC--CCHHHHHHHHHHHHHHH
Confidence 3334688899998874 5 4 68888765 4689999999999999775443 5555433 566777
Q ss_pred HHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHH-ccCcEEEEe---cccccc-CCC
Q 022982 140 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMID---SDDVCK-HAD 214 (289)
Q Consensus 140 ~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLe-AGA~~ViiE---arGI~d-~~G 214 (289)
+..|.-|--|+|.--+ .+|..- ....+. ....-||++..+.+++--. -|.|.+=+= +-|+|. ..-
T Consensus 151 h~~gvsVEaElG~igg------~ed~~~-~~~~~~---~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p 220 (345)
T cd00946 151 AKINMWLEMEIGITGG------EEDGVD-NSGVDN---AELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNV 220 (345)
T ss_pred HHcCCEEEEEecccCC------cccCcc-cccccc---cccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCC
Confidence 8889999999998321 112100 000000 0001257666666553211 277755332 239998 477
Q ss_pred CccHHHHHHH
Q 022982 215 SLRADIIAKV 224 (289)
Q Consensus 215 ~~r~d~v~~i 224 (289)
+++-+.+++|
T Consensus 221 ~L~~~~L~~I 230 (345)
T cd00946 221 KLQPEILGEH 230 (345)
T ss_pred ccCHHHHHHH
Confidence 8999999999
|
The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=88.70 E-value=6.8 Score=38.47 Aligned_cols=124 Identities=13% Similarity=0.179 Sum_probs=82.0
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (289)
.-|+-+=||+||..+++.+.|++.++.++++= +..+. .|+.+.-+|+. -++.++.++++||+.|.|---|.
T Consensus 72 ~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~-~~~~~--~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L 148 (394)
T PRK08898 72 RQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL-PLDPD--AEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHL 148 (394)
T ss_pred CceeEEEECCCCcCCCCHHHHHHHHHHHHHhC-CCCCC--CeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHH
Confidence 45888999999999999999999999998751 11111 23333333333 25789999999999988855444
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
.-+.++-.+.|+.+++.+..|- +....+. |.+ +.+.+.+.++..++.+.+
T Consensus 149 ~~l~R~~~~~~~~~~i~~~~~~~~~v~--~dlI~Gl----------------Pgq-------t~~~~~~~l~~~~~l~p~ 203 (394)
T PRK08898 149 KALGRIHDGAEARAAIEIAAKHFDNFN--LDLMYAL----------------PGQ-------TLDEALADVETALAFGPP 203 (394)
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCCceE--EEEEcCC----------------CCC-------CHHHHHHHHHHHHhcCCC
Confidence 1234555567887777533221 2222221 111 477888889999999998
Q ss_pred EEE
Q 022982 201 MIM 203 (289)
Q Consensus 201 ~Vi 203 (289)
+|-
T Consensus 204 ~is 206 (394)
T PRK08898 204 HLS 206 (394)
T ss_pred EEE
Confidence 763
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.67 E-value=8.1 Score=39.47 Aligned_cols=143 Identities=22% Similarity=0.303 Sum_probs=91.9
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
.+-+.|..+| ||.+=.||=.+.-.+.+.+++..++. .+..++. |. + ...+-++.+.+.|.+.|-+.
T Consensus 28 ~ia~~L~~~G--v~~IE~G~p~~~~~d~e~v~~i~~~~--~~~~i~a--~~-----r---~~~~di~~a~~~g~~~v~i~ 93 (488)
T PRK09389 28 EIARKLDELG--VDVIEAGSAITSEGEREAIKAVTDEG--LNAEICS--FA-----R---AVKVDIDAALECDVDSVHLV 93 (488)
T ss_pred HHHHHHHHcC--CCEEEEeCCcCCHHHHHHHHHHHhcC--CCcEEEe--ec-----c---cCHHHHHHHHhCCcCEEEEE
Confidence 4556677777 89999997554433334444433321 1223322 21 2 12344778888999999998
Q ss_pred CCcccCC--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 122 VGSLEIP--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 122 dGti~i~--------~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
..+-++- . +.-.+.|+.+++.|++| +|...+. + -.|++.+++
T Consensus 94 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~~~~ed~-~-----------------------r~~~~~l~~ 147 (488)
T PRK09389 94 VPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIV--ELSGEDA-S-----------------------RADLDFLKE 147 (488)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE--EEEEeeC-C-----------------------CCCHHHHHH
Confidence 8765542 2 23345678888888764 3444221 0 015888899
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
.++...++||+.|. |+|..|-..+..+.+++..+-
T Consensus 148 ~~~~~~~~Ga~~i~-----l~DTvG~~~P~~~~~lv~~l~ 182 (488)
T PRK09389 148 LYKAGIEAGADRIC-----FCDTVGILTPEKTYELFKRLS 182 (488)
T ss_pred HHHHHHhCCCCEEE-----EecCCCCcCHHHHHHHHHHHH
Confidence 99999999999874 689999999988888887653
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=88.64 E-value=3.9 Score=42.97 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+-++.|++.+.+.|+|.+-|-|..-+++.-.. .|+.+++.|..+..-+-.. . ++
T Consensus 96 ~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~--~i~~~k~~G~~~~~~i~yt--~-------sp--------------- 149 (596)
T PRK14042 96 DVVRAFVKLAVNNGVDVFRVFDALNDARNLKV--AIDAIKSHKKHAQGAICYT--T-------SP--------------- 149 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccCcchHHHHH--HHHHHHHcCCEEEEEEEec--C-------CC---------------
Confidence 46888999999999999999998888877765 8999999998765543231 0 11
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.-|++.+++.++.-.++||+.|- |.|..|-..+..+.+++..+
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~-----IkDtaG~l~P~~v~~lv~al 192 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIA-----IKDMAGLLTPTVTVELYAGL 192 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE-----eCCcccCCCHHHHHHHHHHH
Confidence 11588999999999999998764 67888888888887777654
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=88.58 E-value=3.1 Score=39.94 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=56.1
Q ss_pred EEecCccccccChhHHHHHHHHHHhC-Cceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-C--Ch
Q 022982 57 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-I--PE 129 (289)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~--~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-i--~~ 129 (289)
.|-|.|++++-+++.+++.++-.++. ++++. . .||-+ ......++.+.+.+.|.+.|.|...+.+ + ..
T Consensus 106 ~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-----~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~ 180 (321)
T PRK10415 106 NRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-----EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE 180 (321)
T ss_pred cCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-----CcchHHHHHHHHHHhCCCEEEEecCccccccCCC
Confidence 56677888899999999999988764 44443 2 35533 1125678888899999999999987642 1 12
Q ss_pred hHHHHHHHHHHHc
Q 022982 130 ETLLRYVRLVKSA 142 (289)
Q Consensus 130 ~~r~~lI~~~~~~ 142 (289)
.+ .++|++++++
T Consensus 181 a~-~~~i~~ik~~ 192 (321)
T PRK10415 181 AE-YDSIRAVKQK 192 (321)
T ss_pred cC-hHHHHHHHHh
Confidence 33 3788888873
|
|
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=88.40 E-value=13 Score=35.25 Aligned_cols=109 Identities=14% Similarity=0.192 Sum_probs=72.6
Q ss_pred chhHHHHHHHhhcc-cccEEEecCccccccChhHHHHHHHHHHhCCc--eecCCcHHHHHHHh---CCchHHHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIRN---GPSAFKEYVEDCKQ 112 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~GtlfE~a~~q---g~~~~~~yl~~~k~ 112 (289)
.+..+.+.++.+-+ =++-+-|..|.....+.+.+.+.++..+++.. .++.=+-.|+.+.- | -..++.++..|+
T Consensus 37 s~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g-~~~~e~l~~Lke 115 (309)
T TIGR00423 37 SLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEG-LSIEEVLKRLKK 115 (309)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 44454444443222 24566666777666777889999999998853 33323566765322 2 135899999999
Q ss_pred cCCCEE-EecCCcc-----------cCChhHHHHHHHHHHHcCCcccc
Q 022982 113 VGFDTI-ELNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 113 lGF~~I-EISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
.|.+.+ .++.-+. ..+.++|.+.|+.+++.|+++.+
T Consensus 116 AGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s 163 (309)
T TIGR00423 116 AGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTA 163 (309)
T ss_pred cCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 999977 2321111 35788999999999999988775
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=88.39 E-value=3.5 Score=36.73 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC-hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~-~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
..-++.+..++.|++.+-|.|=+-... ...-..+|+++++.=. +| +-+. + ...
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~--~p-v~~~---------G-----gI~--------- 83 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVG--IP-VQVG---------G-----GIR--------- 83 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcC--CC-EEEe---------C-----CcC---------
Confidence 455666777789999999997654432 4444678888877310 01 2220 0 111
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEe
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 236 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifE 236 (289)
+ .+.+++.+++||+.|++=.. ..+ ..+.+.++++.++.+++++=
T Consensus 84 --~----~e~~~~~~~~Gad~vvigs~-~l~-----dp~~~~~i~~~~g~~~i~~s 127 (234)
T cd04732 84 --S----LEDIERLLDLGVSRVIIGTA-AVK-----NPELVKELLKEYGGERIVVG 127 (234)
T ss_pred --C----HHHHHHHHHcCCCEEEECch-HHh-----ChHHHHHHHHHcCCceEEEE
Confidence 1 56778888899999998443 332 25677778877776666554
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=88.18 E-value=2.9 Score=37.34 Aligned_cols=97 Identities=21% Similarity=0.286 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC-cccC---ChhHHHHHHHHHHHc-C
Q 022982 70 PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG-SLEI---PEETLLRYVRLVKSA-G 143 (289)
Q Consensus 70 ~~l~eKI~l~~~-~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG-ti~i---~~~~r~~lI~~~~~~-G 143 (289)
+.+++.++.+|+ .++.+.++.- ..++ ...+.+.|+|+|-++.+ .... .......+++.+++. +
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~----------t~ee-~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~ 173 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCS----------TLEE-GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG 173 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCC----------CHHH-HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC
Confidence 568899999999 8888776521 1122 24578899999977532 2111 112224567777664 4
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecccccc
Q 022982 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 211 (289)
Q Consensus 144 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d 211 (289)
..|....|++. .+.+++.+++||+-|++=+ .|++
T Consensus 174 iPvia~GGI~t---------------------------------~~~~~~~l~~GadgV~iGs-ai~~ 207 (221)
T PRK01130 174 CPVIAEGRINT---------------------------------PEQAKKALELGAHAVVVGG-AITR 207 (221)
T ss_pred CCEEEECCCCC---------------------------------HHHHHHHHHCCCCEEEEch-HhcC
Confidence 55555555521 3667778899999999853 3554
|
|
| >PRK09997 hydroxypyruvate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.17 E-value=2.1 Score=38.85 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=35.3
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022982 95 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
++.+. .+++.++.+++.||+.||+.. ...+ +..++-+.+++.|+++..
T Consensus 11 ~~~~~--~l~~~l~~~a~~Gf~~VEl~~-~~~~---~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 11 LFGEY--DFLARFEKAAQCGFRGVEFMF-PYDY---DIEELKQVLASNKLEHTL 58 (258)
T ss_pred hccCC--CHHHHHHHHHHhCCCEEEEcC-CCCC---CHHHHHHHHHHcCCcEEE
Confidence 44555 799999999999999999954 2222 445666677899999743
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=88.01 E-value=5 Score=45.18 Aligned_cols=159 Identities=9% Similarity=0.084 Sum_probs=108.0
Q ss_pred chhHHHHHHHhh-cccccEEEecCccccccChhHHHHHHHHHHhCCc--ee--c-CCcHHHHHHH--hCCchHHHHHHHH
Q 022982 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YV--S-TGDWAEHLIR--NGPSAFKEYVEDC 110 (289)
Q Consensus 39 g~~~~~DlLe~a-g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v--~-~GtlfE~a~~--qg~~~~~~yl~~~ 110 (289)
+-.-.+++++.| ..-||++-+.-...- -+.++.-|+.++++|- .+ | +|..+ -+.. ..++.+-++.+++
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd---~~~~~~~i~~vk~~g~~~~~~i~ytg~~~-d~~~~~~~~~~~~~~a~~l 700 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNW---VENMRVAIDAVRETGKIAEAAICYTGDIL-DPARAKYDLDYYVDLAKEL 700 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCCh---HHHHHHHHHHHHHcCCeEEEEEEEEecCC-CCCCCCCCHHHHHHHHHHH
Confidence 344667766654 455999998864444 4579999999999993 22 2 24322 1111 2333556667778
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHH
Q 022982 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (289)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 190 (289)
.++|.+.|=|.|-.--+.+..-.++|+.++++ +.+ .++... .. |...-+-.
T Consensus 701 ~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~-~~i--pi~~H~-Hn-------------------------t~Gla~an 751 (1146)
T PRK12999 701 EKAGAHILAIKDMAGLLKPAAAYELVSALKEE-VDL--PIHLHT-HD-------------------------TSGNGLAT 751 (1146)
T ss_pred HHcCCCEEEECCccCCCCHHHHHHHHHHHHHH-cCC--eEEEEe-CC-------------------------CCchHHHH
Confidence 88999999999999999999999999999984 111 233322 11 12233667
Q ss_pred HHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCC
Q 022982 191 AERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 191 ~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
.-..++|||+.|=+=-.|+-...||...+.+-..++..+.
T Consensus 752 ~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~~~~ 791 (1146)
T PRK12999 752 YLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGTER 791 (1146)
T ss_pred HHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHhcCC
Confidence 7789999999765555688888888888777666665543
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=87.85 E-value=2.4 Score=39.36 Aligned_cols=128 Identities=21% Similarity=0.328 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHH
Q 022982 69 KPFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLV 139 (289)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~ 139 (289)
.+.+..-=++++.-++++.- + ||-. .|..+.+-++...+.|.-.|-|-|.- --+|.++.+.=|+.+
T Consensus 55 ~e~~~~~~~I~~~~~iPv~vD~d~GyG~-----~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa 129 (238)
T PF13714_consen 55 TEMLAAVRRIARAVSIPVIVDADTGYGN-----DPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAA 129 (238)
T ss_dssp HHHHHHHHHHHHHSSSEEEEE-TTTSSS-----SHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCcEEEEcccccCc-----hhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHH
Confidence 34444445566777888875 2 4422 12356667778889999999999881 135888888888877
Q ss_pred HHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHH
Q 022982 140 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRAD 219 (289)
Q Consensus 140 ~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d 219 (289)
++.-= .+.|-+ .. .-|. +.. .....++.|++++...+||||.|.+++- ...+
T Consensus 130 ~~a~~--~~~~~I---~A----RTDa----~~~-------~~~~~deaI~R~~aY~eAGAD~ifi~~~--------~~~~ 181 (238)
T PF13714_consen 130 VDARR--DPDFVI---IA----RTDA----FLR-------AEEGLDEAIERAKAYAEAGADMIFIPGL--------QSEE 181 (238)
T ss_dssp HHHHS--STTSEE---EE----EECH----HCH-------HHHHHHHHHHHHHHHHHTT-SEEEETTS--------SSHH
T ss_pred HHhcc--CCeEEE---EE----eccc----ccc-------CCCCHHHHHHHHHHHHHcCCCEEEeCCC--------CCHH
Confidence 76300 011222 00 1111 000 0124799999999999999999999975 3466
Q ss_pred HHHHHHhccC
Q 022982 220 IIAKVIGRLG 229 (289)
Q Consensus 220 ~v~~ii~~l~ 229 (289)
.++++.+.++
T Consensus 182 ~i~~~~~~~~ 191 (238)
T PF13714_consen 182 EIERIVKAVD 191 (238)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhcC
Confidence 6888888887
|
... |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=87.84 E-value=9.2 Score=37.10 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCceec-----CCcHHHH--------------------HHHhC--CchHHHHHH---HHHHcCCCEEEe
Q 022982 71 FIEEVVKRAHQHDVYVS-----TGDWAEH--------------------LIRNG--PSAFKEYVE---DCKQVGFDTIEL 120 (289)
Q Consensus 71 ~l~eKI~l~~~~gV~v~-----~GtlfE~--------------------a~~qg--~~~~~~yl~---~~k~lGF~~IEI 120 (289)
.+++.++.+|+||-.++ +|-+.+. +++.. ..-+++|.+ .|++.|||.|||
T Consensus 82 ~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVei 161 (337)
T PRK13523 82 GLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEI 161 (337)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 67889999999997653 2322210 00000 012444544 566779999999
Q ss_pred cCCc---------ccC---------ChhHHHHHH----HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 022982 121 NVGS---------LEI---------PEETLLRYV----RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 121 SdGt---------i~i---------~~~~r~~lI----~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 178 (289)
.-|- --. +.+.|.|++ +.+++. +-.-+++|....+. ..
T Consensus 162 h~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~---~~~~v~vRis~~d~-----------------~~ 221 (337)
T PRK13523 162 HGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEV---WDGPLFVRISASDY-----------------HP 221 (337)
T ss_pred ccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHh---cCCCeEEEeccccc-----------------CC
Confidence 8772 111 345566544 444443 11125666533221 11
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
.|. ++++.++.++..-++|+|+|-|=++
T Consensus 222 ~G~-~~~e~~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 222 GGL-TVQDYVQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred CCC-CHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 122 4788888888888899999998554
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=87.84 E-value=2.2 Score=40.07 Aligned_cols=74 Identities=27% Similarity=0.341 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHcC-CCEEEecCCccc---------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022982 102 AFKEYVEDCKQVG-FDTIELNVGSLE---------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 102 ~~~~yl~~~k~lG-F~~IEISdGti~---------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
.+.+..+.+++.| ||+|||+-++-. -..+.-.++|+.+++.- -+| +.+|-..
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~p-v~vKl~~--------------- 166 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVP-VIVKLTP--------------- 166 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCC-EEEEcCC---------------
Confidence 5666677778889 999999653322 23466678888888752 122 4554310
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
+.++.++.++...++||+.|.+
T Consensus 167 -----------~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 167 -----------NVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred -----------CchhHHHHHHHHHHcCCCEEEE
Confidence 2345577778888999998876
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.78 E-value=11 Score=35.25 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhC--Ccee--cCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHH
Q 022982 70 PFIEEVVKRAHQH--DVYV--STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYV 136 (289)
Q Consensus 70 ~~l~eKI~l~~~~--gV~v--~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI 136 (289)
+.+.+-++..|++ ++.+ +.|-. -++-++..|+.|++.+-++..|- .-+.+++.+.|
T Consensus 75 e~~~ei~~~ik~~~p~l~i~~s~G~~-----------~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i 143 (279)
T PRK08508 75 EYVAEAAKAVKKEVPGLHLIACNGTA-----------SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTC 143 (279)
T ss_pred HHHHHHHHHHHhhCCCcEEEecCCCC-----------CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHH
Confidence 4566777777776 4544 32322 36777888999999887654332 24457888899
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 137 ~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
+.+++.|+++.+ |.-.+.. ++.+++++.+..--+-+.+.|-+
T Consensus 144 ~~a~~~Gi~v~s--g~I~GlG------------------------Et~ed~~~~l~~lr~L~~~svpl 185 (279)
T PRK08508 144 ENAKEAGLGLCS--GGIFGLG------------------------ESWEDRISFLKSLASLSPHSTPI 185 (279)
T ss_pred HHHHHcCCeecc--eeEEecC------------------------CCHHHHHHHHHHHHcCCCCEEee
Confidence 999999998777 3333321 14777888887777888886654
|
|
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.58 E-value=15 Score=36.13 Aligned_cols=119 Identities=15% Similarity=0.221 Sum_probs=80.7
Q ss_pred EecCccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCC--chHHHHHHHHHHcCCCEE-----EecCCcc---
Q 022982 58 KFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGP--SAFKEYVEDCKQVGFDTI-----ELNVGSL--- 125 (289)
Q Consensus 58 Kfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~--~~~~~yl~~~k~lGF~~I-----EISdGti--- 125 (289)
=+-.|-..-.+-+.+.+.++..+++ ++.++.=+-.|+++.... -..++.++..|+.|++.+ |+.+-++
T Consensus 119 ~iv~G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~ 198 (370)
T PRK05926 119 HIVAGCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRET 198 (370)
T ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHh
Confidence 3334665556667888888888876 677664455677765431 246899999999999764 3333333
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcE
Q 022982 126 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (289)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ 201 (289)
..+.++|.+.++.+++.|+++-+= .-++.. ++++++++.+..--+-+.+.
T Consensus 199 ~~p~~~t~~e~l~~i~~a~~~Gi~~~sg--mi~G~g------------------------Et~edrv~~l~~Lr~Lq~~t 252 (370)
T PRK05926 199 LAPGRLSSQGFLEIHKTAHSLGIPSNAT--MLCYHR------------------------ETPEDIVTHMSKLRALQDKT 252 (370)
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCcccCc--eEEeCC------------------------CCHHHHHHHHHHHHhcCCcc
Confidence 346799999999999999997773 322221 24778888877766666654
Q ss_pred E
Q 022982 202 I 202 (289)
Q Consensus 202 V 202 (289)
+
T Consensus 253 ~ 253 (370)
T PRK05926 253 S 253 (370)
T ss_pred C
Confidence 3
|
|
| >PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 | Back alignment and domain information |
|---|
Probab=87.57 E-value=3.7 Score=34.71 Aligned_cols=148 Identities=18% Similarity=0.234 Sum_probs=82.8
Q ss_pred HHHHHHcCCCEEEecCCcccCCh---hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPE---ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~---~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
|+.++++||+.||++-....... ++..++.+.+++.|+++..--...+.........++ ..+ ....
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~-----~~~------r~~~ 69 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSA-----NDE------REEA 69 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTS-----SSH------HHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCc-----chh------hHHH
Confidence 57899999999999987765554 577789999999999955533222211100000000 000 0011
Q ss_pred HHHHHHHHHHHHHccCcEEEEeccc--cccCCCC--cc---H---HHHHHHHhccCCCceEEecCC------c---hhHH
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSDD--VCKHADS--LR---A---DIIAKVIGRLGLEKTMFEATN------P---RTSE 244 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEarG--I~d~~G~--~r---~---d~v~~ii~~l~~eklifEAP~------k---~qQ~ 244 (289)
.+.+.+.++..=+.|+.+|++-+-. ....... .. . ..+.+++++.|+ ++.+|--. . .+..
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~i~lE~~~~~~~~~~~~~~~~~ 148 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGV-RIALENHPGPFSETPFSVEEIY 148 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTS-EEEEE-SSSSSSSEESSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcc-eEEEecccCccccchhhHHHHH
Confidence 4444555555556799999998541 1111110 00 1 222333344453 47777432 2 5678
Q ss_pred HHHHHhC-CCcccccCCCCchhh
Q 022982 245 WFIRRYG-PKVNLFVDHSQVMDL 266 (289)
Q Consensus 245 ~~I~~fG-~~VNLgI~~~eVl~L 266 (289)
++++.++ |+|++.++..+...-
T Consensus 149 ~~l~~~~~~~~~i~~D~~h~~~~ 171 (213)
T PF01261_consen 149 RLLEEVDSPNVGICFDTGHLIMA 171 (213)
T ss_dssp HHHHHHTTTTEEEEEEHHHHHHT
T ss_pred HHHhhcCCCcceEEEehHHHHHc
Confidence 9999999 567776766665543
|
1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B .... |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.56 E-value=5.2 Score=36.54 Aligned_cols=94 Identities=9% Similarity=0.056 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 022982 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (289)
..-.+-++.|++++|.+.|| |.-|+. .+.++|++.|-+-+..... -..+|+.++. ++
T Consensus 95 ~~~~~vi~~a~~~~i~~iPG~~TptEi~-------------~a~~~Ga~~vKlFPa~~~g----g~~~lk~l~~----p~ 153 (212)
T PRK05718 95 GLTPPLLKAAQEGPIPLIPGVSTPSELM-------------LGMELGLRTFKFFPAEASG----GVKMLKALAG----PF 153 (212)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCCHHHHH-------------HHHHCCCCEEEEccchhcc----CHHHHHHHhc----cC
Confidence 33457777888888888887 567733 3478999999995433221 1356666665 23
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCC
Q 022982 148 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 213 (289)
Q Consensus 148 ~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~ 213 (289)
|.+... -+| + ++ .+.+...|++|+..+.. +.-+++.+
T Consensus 154 p~~~~~----ptG--G-------V~---------------~~ni~~~l~ag~v~~vg-gs~L~~~~ 190 (212)
T PRK05718 154 PDVRFC----PTG--G-------IS---------------PANYRDYLALPNVLCIG-GSWMVPKD 190 (212)
T ss_pred CCCeEE----EeC--C-------CC---------------HHHHHHHHhCCCEEEEE-ChHhCCcc
Confidence 433221 111 0 11 47889999999666666 66677543
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.46 E-value=22 Score=33.95 Aligned_cols=174 Identities=16% Similarity=0.211 Sum_probs=96.9
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec----CCc--------HHHHHH--HhC--------
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--------WAEHLI--RNG-------- 99 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gt--------lfE~a~--~qg-------- 99 (289)
.++++|..|-+- +++-|.+-+++-+.++.-|+-+.+.+.++. +|+ +...+. ++.
T Consensus 5 ~~~~~l~~A~~~----~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lH 80 (286)
T PRK06801 5 SLANGLAHARKH----GYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLN 80 (286)
T ss_pred cHHHHHHHHHHC----CceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 455555544321 455666666666666666666666665432 121 111110 000
Q ss_pred --CchHHHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 022982 100 --PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 100 --~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
-...-+.++.|-+.||+.|=+ ||+- +|.++-. ++.+.++..|.-|--|+|. +|..++.. ...+
T Consensus 81 lDH~~~~e~i~~Ai~~GftSVm~-D~S~-l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~------vgg~e~~v---~~~~ 149 (286)
T PRK06801 81 LDHGLHFEAVVRALRLGFSSVMF-DGST-LEYEENVRQTREVVKMCHAVGVSVEAELGA------VGGDEGGA---LYGE 149 (286)
T ss_pred CCCCCCHHHHHHHHHhCCcEEEE-cCCC-CCHHHHHHHHHHHHHHHHHcCCeEEeecCc------ccCCCCCc---ccCC
Confidence 012346677888999999999 4443 4555544 4566677888887778877 22122210 0000
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEecc----ccccCCCCccHHHHHHHHhccCCCceEEe
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD----DVCKHADSLRADIIAKVIGRLGLEKTMFE 236 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar----GI~d~~G~~r~d~v~~ii~~l~~eklifE 236 (289)
.. .....+|++..+.++ +.|+|++=+ += |.|+..-.++-+.+.+|-+.++.--++-=
T Consensus 150 ~~--~~~~T~pe~a~~f~~---~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHG 210 (286)
T PRK06801 150 AD--SAKFTDPQLARDFVD---RTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHG 210 (286)
T ss_pred cc--cccCCCHHHHHHHHH---HHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEC
Confidence 00 000114554444443 579999999 63 78987667999999999887654334333
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=87.38 E-value=9.1 Score=38.76 Aligned_cols=88 Identities=10% Similarity=0.002 Sum_probs=59.9
Q ss_pred chhHHHHHHHhhcccccEEEecCcccc------ccChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDC 110 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~ 110 (289)
.+..++..++.- .|-+=+|+.... -+..+.|++-++++|++|+++|.- ++..-- ... .+.+|++.+
T Consensus 12 ~~e~l~aAi~~G---ADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~-el~--~~~~~l~~l 85 (443)
T PRK15452 12 TLKNMRYAFAYG---ADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNA-KLK--TFIRDLEPV 85 (443)
T ss_pred CHHHHHHHHHCC---CCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHH-HHH--HHHHHHHHH
Confidence 566777777654 455555543222 344567999999999999988753 332211 112 688889999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHc
Q 022982 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (289)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (289)
.++|+|+|=|+| ..+++.+++.
T Consensus 86 ~~~gvDgvIV~d----------~G~l~~~ke~ 107 (443)
T PRK15452 86 IAMKPDALIMSD----------PGLIMMVREH 107 (443)
T ss_pred HhCCCCEEEEcC----------HHHHHHHHHh
Confidence 999999999998 3566677765
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.37 E-value=9.5 Score=35.93 Aligned_cols=106 Identities=10% Similarity=0.156 Sum_probs=69.1
Q ss_pred chhHHHHHHHhh-cccccEEEecCccc-cccChhHHHHH--------------HHHH----HhCCceecCCcHHHHHHHh
Q 022982 39 SHNVLEDIFESM-GQFVDGLKFSGGSH-SLMPKPFIEEV--------------VKRA----HQHDVYVSTGDWAEHLIRN 98 (289)
Q Consensus 39 g~~~~~DlLe~a-g~yID~lKfg~GTs-~l~p~~~l~eK--------------I~l~----~~~gV~v~~GtlfE~a~~q 98 (289)
.++.+.+++... -.-+|++=+|+=.| .+.+-..+++- .+++ +++++++..=|++...+..
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 445566644433 34599999997443 12222222222 2222 2245544333677777777
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 022982 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (289)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g 151 (289)
| +++|++.|++.|+|.|=|= ++|.++..++++.++++|+.+.+=+.
T Consensus 107 G---~e~F~~~~~~aGvdgviip----DLP~ee~~~~~~~~~~~gi~~I~lv~ 152 (263)
T CHL00200 107 G---INKFIKKISQAGVKGLIIP----DLPYEESDYLISVCNLYNIELILLIA 152 (263)
T ss_pred C---HHHHHHHHHHcCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 5 9999999999999999774 57889999999999999988665443
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=87.37 E-value=5.8 Score=35.79 Aligned_cols=116 Identities=11% Similarity=0.088 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
-+.+.+.++++|.++|-+-+.--.++.++-.++++.+++.|+.++-+++-
T Consensus 74 g~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~------------------------------ 123 (223)
T PRK04302 74 GHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNN------------------------------ 123 (223)
T ss_pred hhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCC------------------------------
Confidence 34568999999999999988766688888889999999999987742221
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecccccc---CCCCccHHHHHHHHhccC----CCceEEecCC-chhHHHHHHHhCCC
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCK---HADSLRADIIAKVIGRLG----LEKTMFEATN-PRTSEWFIRRYGPK 253 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d---~~G~~r~d~v~~ii~~l~----~eklifEAP~-k~qQ~~~I~~fG~~ 253 (289)
.+++++-.+.|.+.|=+|.+++.. .......+.++++++.+. --.++-+.-- ...+...+..-|.+
T Consensus 124 -----~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gad 197 (223)
T PRK04302 124 -----PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGAD 197 (223)
T ss_pred -----HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCC
Confidence 123334456788999999875321 111123444554433332 1245555542 44555555556655
|
|
| >TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917 | Back alignment and domain information |
|---|
Probab=87.33 E-value=7.4 Score=36.41 Aligned_cols=95 Identities=13% Similarity=0.162 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
++.-+..++++|-+.|-.=.=--.=..++...+-+.+.++||..-|--|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGI------------------------------ 186 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGI------------------------------ 186 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCc------------------------------
Confidence 66777777777777766432111123445555556666666653332222
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecc-ccc-cCCCCccHHHHHHHHhc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSD-DVC-KHADSLRADIIAKVIGR 227 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEar-GI~-d~~G~~r~d~v~~ii~~ 227 (289)
|.+..-+-.+-+|+||+.+||=-== .|. ...|+-|.+.+.+|+..
T Consensus 187 dl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 187 DLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAI 233 (236)
T ss_pred cHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHH
Confidence 4666677788899999999984332 244 44699999999988864
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=87.15 E-value=1.8 Score=40.47 Aligned_cols=105 Identities=10% Similarity=0.134 Sum_probs=69.2
Q ss_pred chhHHHHHHH-hhcccccEEEecCcccc-ccChhHHH--------------HHHHHHHh----CCceecCCcHHHHHHHh
Q 022982 39 SHNVLEDIFE-SMGQFVDGLKFSGGSHS-LMPKPFIE--------------EVVKRAHQ----HDVYVSTGDWAEHLIRN 98 (289)
Q Consensus 39 g~~~~~DlLe-~ag~yID~lKfg~GTs~-l~p~~~l~--------------eKI~l~~~----~gV~v~~GtlfE~a~~q 98 (289)
.+..+.+++. ..-..+|++=+|+=.|= +.+-..++ +-.++.++ +++++..=|++-..+..
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~ 93 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKR 93 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 3445555444 33456999999974431 11111111 22333322 44543333677777766
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 022982 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (289)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (289)
.+++|++.|++.|.+.+=|- +||.++..++++.++++|+...+=+
T Consensus 94 ---G~~~F~~~~~~aGv~Gviip----DLP~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 94 ---GIDKFMATIKEAGVHGLVVP----DLPLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred ---HHHHHHHHHHHcCCCEEEeC----CCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 49999999999999999887 5889999999999999999876644
|
|
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=87.12 E-value=3.9 Score=38.28 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=71.7
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 99 GPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
+.+.+.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+.-=+|. +|+ |
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi--~gv-------g--------------- 73 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVI--FQV-------G--------------- 73 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEE--EEe-------C---------------
Confidence 34578899999999999999886543 58999999999998887421111 222 1
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEeccccccC-CCCccHHHHHHHHhccCCCceEEecCC
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH-ADSLRADIIAKVIGRLGLEKTMFEATN 239 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~-~G~~r~d~v~~ii~~l~~eklifEAP~ 239 (289)
..++++.|++++..-++|||.|++=.--.+.. +-+--.+-...|++ ++.=++...|.
T Consensus 74 -----~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~ 131 (279)
T cd00953 74 -----SLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPK 131 (279)
T ss_pred -----cCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCcc
Confidence 01378889999999999999999855432221 11111222233444 55556666663
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.06 E-value=2.5 Score=38.63 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=71.0
Q ss_pred HHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022982 74 EVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 74 eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
+-++...+++| .|.-|.=.| ..-+..+.+.+.|+++|||. +......+.|+.+++.. |++-+
T Consensus 7 ~~~~~l~~~~~iaV~r~~~~~--------~a~~i~~al~~~Gi~~iEit-----l~~~~~~~~I~~l~~~~----p~~~I 69 (212)
T PRK05718 7 SIEEILRAGPVVPVIVINKLE--------DAVPLAKALVAGGLPVLEVT-----LRTPAALEAIRLIAKEV----PEALI 69 (212)
T ss_pred HHHHHHHHCCEEEEEEcCCHH--------HHHHHHHHHHHcCCCEEEEe-----cCCccHHHHHHHHHHHC----CCCEE
Confidence 34456677887 444453333 33455678889999999998 55567889999998731 22222
Q ss_pred ecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc-----------ccccCCCCccHHHH
Q 022982 153 MFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----------DVCKHADSLRADII 221 (289)
Q Consensus 153 k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-----------GI~d~~G~~r~d~v 221 (289)
| -+ ..+ | .++++..++|||++++.=+= ++--==|-....++
T Consensus 70 -------G--AG----TVl-----------~----~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~~iPG~~TptEi 121 (212)
T PRK05718 70 -------G--AG----TVL-----------N----PEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIPLIPGVSTPSEL 121 (212)
T ss_pred -------E--Ee----ecc-----------C----HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHH
Confidence 1 01 111 1 38899999999999997652 21111255555555
Q ss_pred HHHHhccCCCceEE
Q 022982 222 AKVIGRLGLEKTMF 235 (289)
Q Consensus 222 ~~ii~~l~~eklif 235 (289)
.+.. +.|.+-+-+
T Consensus 122 ~~a~-~~Ga~~vKl 134 (212)
T PRK05718 122 MLGM-ELGLRTFKF 134 (212)
T ss_pred HHHH-HCCCCEEEE
Confidence 5543 477665555
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.95 E-value=6.6 Score=36.95 Aligned_cols=110 Identities=17% Similarity=0.252 Sum_probs=79.7
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
+.+++.+|-|+|=+--.. ++.++..++++.+.+.||.|+-|++-
T Consensus 117 I~ea~~~GADavLLI~~~--L~~~~l~~l~~~a~~lGle~LVEVh~---------------------------------- 160 (247)
T PRK13957 117 IREARAFGASAILLIVRI--LTPSQIKSFLKHASSLGMDVLVEVHT---------------------------------- 160 (247)
T ss_pred HHHHHHcCCCEEEeEHhh--CCHHHHHHHHHHHHHcCCceEEEECC----------------------------------
Confidence 567788999999665544 46778889999999999999999876
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCCccc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPKVNL 256 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ekl-ifEAP~k-~qQ~~~I~~fG~~VNL 256 (289)
-+.+++.+++||..|-|..|.+..- ++..+...+++..+|-+.+ |-|.=-+ ..+...+++. .|-=|
T Consensus 161 -~~El~~a~~~ga~iiGINnRdL~t~--~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davL 228 (247)
T PRK13957 161 -EDEAKLALDCGAEIIGINTRDLDTF--QIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAAL 228 (247)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEE
Confidence 2566778899999999999977443 4456667888888886655 4454433 2444555554 44333
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=86.92 E-value=7.3 Score=35.52 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022982 69 KPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (289)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (289)
+..-.+-++.|+++||.+.|| |.-|+.-.. ++|++.|-+==...-= =..+|+.++. +
T Consensus 87 P~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~-------------~~Ga~~vKlFPA~~~G----G~~yikal~~----p 145 (204)
T TIGR01182 87 PGLTPELAKHAQDHGIPIIPGVATPSEIMLAL-------------ELGITALKLFPAEVSG----GVKMLKALAG----P 145 (204)
T ss_pred CCCCHHHHHHHHHcCCcEECCCCCHHHHHHHH-------------HCCCCEEEECCchhcC----CHHHHHHHhc----c
Confidence 345678889999999999998 788887554 5899999875432110 0256776665 4
Q ss_pred cceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccC
Q 022982 147 KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH 212 (289)
Q Consensus 147 ~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~ 212 (289)
+|.+-.. .+| + ++ .+.+..+|+|||.-|-+=+ .|++.
T Consensus 146 lp~i~~~----ptG--G-------V~---------------~~N~~~~l~aGa~~vg~Gs-~L~~~ 182 (204)
T TIGR01182 146 FPQVRFC----PTG--G-------IN---------------LANVRDYLAAPNVACGGGS-WLVPK 182 (204)
T ss_pred CCCCcEE----ecC--C-------CC---------------HHHHHHHHhCCCEEEEECh-hhcCc
Confidence 5544332 111 1 11 4788999999999988744 36543
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=86.81 E-value=25 Score=33.67 Aligned_cols=138 Identities=12% Similarity=0.082 Sum_probs=84.6
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.+..|-+.||+.|=+....+++.+--+ +++++.++..|.-|--|+|.=-+ .+|..-.. . .....-
T Consensus 86 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg------~e~~~~~~-----~-~~~~~T 153 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGG------VEDDLSVD-----E-EDALYT 153 (282)
T ss_pred HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCC------ccCCCccc-----c-chhccC
Confidence 5678889999999999766544433222 36778888889999999998321 11210000 0 000112
Q ss_pred cHHHHHHHHHHHHHccCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-C-chhHHHHHHHhCCCcccc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-N-PRTSEWFIRRYGPKVNLF 257 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~~G~~r~d~v~~ii~~l~~eklifEAP-~-k~qQ~~~I~~fG~~VNLg 257 (289)
||++..+.++ +-|+|.+=|== -|+|...-+++-|.+++|-+.++.-=++==+. . .+|....|+.==..||++
T Consensus 154 ~peea~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 230 (282)
T TIGR01858 154 DPQEAKEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVA 230 (282)
T ss_pred CHHHHHHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 6777777766 56998775543 39999888999999999988776322222211 2 234444444333567765
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=86.45 E-value=3.3 Score=39.50 Aligned_cols=70 Identities=20% Similarity=0.354 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHcCCCEEEec------CCcc-------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELN------VGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS------dGti-------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 168 (289)
.++.|++.+|++||..|-=- ||.. -|.-+.=.++|++|++.||...|=+-
T Consensus 96 ~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf----------------- 158 (268)
T PF09370_consen 96 DMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVF----------------- 158 (268)
T ss_dssp -HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE------------------
T ss_pred cHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeec-----------------
Confidence 58899999999999887522 2221 34556667899999998887544211
Q ss_pred cccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
+ .+++++-.+||||.|.+--
T Consensus 159 --------------~----~e~A~~M~~AGaDiiv~H~ 178 (268)
T PF09370_consen 159 --------------N----EEQARAMAEAGADIIVAHM 178 (268)
T ss_dssp --------------S----HHHHHHHHHHT-SEEEEE-
T ss_pred --------------C----HHHHHHHHHcCCCEEEecC
Confidence 0 4677788899999988765
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=86.40 E-value=3.2 Score=39.37 Aligned_cols=147 Identities=13% Similarity=0.160 Sum_probs=84.5
Q ss_pred HHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC--C---c---H---HHHHHHhCCchHHHHHHHHHHcC
Q 022982 46 IFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G---D---W---AEHLIRNGPSAFKEYVEDCKQVG 114 (289)
Q Consensus 46 lLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--G---t---l---fE~a~~qg~~~~~~yl~~~k~lG 114 (289)
-++.+++|+|++.+|- .+|..- +.+.-+-+.|-+|-. | | | .|++...|..++ .+.+-|
T Consensus 85 ~~~~vae~vDilQIgA---rn~rn~---~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~v-----iLcERG 153 (258)
T TIGR01362 85 QCEPVAEVVDIIQIPA---FLCRQT---DLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNI-----LLCERG 153 (258)
T ss_pred HHHHHHhhCcEEEeCc---hhcchH---HHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcE-----EEEeCC
Confidence 3567789999999984 222211 223333344555543 4 2 2 344444442211 123445
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHcCCccccee--eeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHH
Q 022982 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF--AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (289)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~--g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 192 (289)
++. |.-.+..|- +.|-.+++.++-|+..- .+|.+.. .++.. -| ..+.+...++
T Consensus 154 ~tf-----~y~r~~~D~--~~ip~~k~~~~PVi~DpSHsvq~pg~----~g~~s------------~G--~r~~v~~la~ 208 (258)
T TIGR01362 154 TSF-----GYNNLVVDM--RSLPIMRELGCPVIFDATHSVQQPGG----LGGAS------------GG--LREFVPTLAR 208 (258)
T ss_pred CCc-----CCCCcccch--hhhHHHHhcCCCEEEeCCccccCCCC----CCCCC------------CC--cHHHHHHHHH
Confidence 422 222222222 35666677777665433 3333321 11110 01 1456678888
Q ss_pred HHHHccCcEEEEecc-----ccccCCCCccHHHHHHHHhcc
Q 022982 193 RCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 193 ~dLeAGA~~ViiEar-----GI~d~~G~~r~d~v~~ii~~l 228 (289)
..+.+|||-+|||.- -++|....+..+.++++++.+
T Consensus 209 AAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l 249 (258)
T TIGR01362 209 AAVAVGIDGLFMETHPDPKNAKSDGPNMLPLSELEGLLEKL 249 (258)
T ss_pred HHHHhCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHH
Confidence 999999999999994 699999999999999998765
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=86.39 E-value=12 Score=34.75 Aligned_cols=120 Identities=19% Similarity=0.171 Sum_probs=73.2
Q ss_pred ChhHHHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHH---HHHHcCCCEEEecCCc-------------ccCChh
Q 022982 68 PKPFIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVE---DCKQVGFDTIELNVGS-------------LEIPEE 130 (289)
Q Consensus 68 p~~~l~eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~---~~k~lGF~~IEISdGt-------------i~i~~~ 130 (289)
|++++.+-+..+++... .+.-|+ +..++|++ .+.+ +++.|||+-|+ +--.++
T Consensus 53 ~~~~i~~e~~~~~~~~~vivnv~~----------~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~ 121 (231)
T TIGR00736 53 FNSYIIEQIKKAESRALVSVNVRF----------VDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKE 121 (231)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEec----------CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHH
Confidence 45777777777765443 223332 12222222 2333 79999999887 334677
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccc
Q 022982 131 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC 210 (289)
Q Consensus 131 ~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~ 210 (289)
.-.++++.+++.+ +| +.+|-... | +....++.++...++||+.|.|+++ |
T Consensus 122 ~l~~iv~av~~~~---~P-VsvKiR~~------------------~------~~~~~~~~a~~l~~aGad~i~Vd~~--~ 171 (231)
T TIGR00736 122 LLKEFLTKMKELN---KP-IFVKIRGN------------------C------IPLDELIDALNLVDDGFDGIHVDAM--Y 171 (231)
T ss_pred HHHHHHHHHHcCC---Cc-EEEEeCCC------------------C------CcchHHHHHHHHHHcCCCEEEEeeC--C
Confidence 7788888888643 33 67765321 1 1223468888888999999999753 3
Q ss_pred cCCCCccHHHHHHHHhcc
Q 022982 211 KHADSLRADIIAKVIGRL 228 (289)
Q Consensus 211 d~~G~~r~d~v~~ii~~l 228 (289)
...+....+.|.++.+.+
T Consensus 172 ~g~~~a~~~~I~~i~~~~ 189 (231)
T TIGR00736 172 PGKPYADMDLLKILSEEF 189 (231)
T ss_pred CCCchhhHHHHHHHHHhc
Confidence 222225566677766654
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=86.36 E-value=10 Score=36.72 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHccCcEEEE
Q 022982 183 DVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~Vii 204 (289)
++++.++.+++.-++|+|+|-+
T Consensus 222 ~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 222 TWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEe
Confidence 5788888888888899999988
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=85.93 E-value=19 Score=34.63 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=45.5
Q ss_pred hhHHHHHHHhhccc-ccEEEecCccccccC-------hhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHH
Q 022982 40 HNVLEDIFESMGQF-VDGLKFSGGSHSLMP-------KPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVE 108 (289)
Q Consensus 40 ~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p-------~~~l~eKI~l~~~~-gV~v~~--GtlfE~a~~qg~~~~~~yl~ 108 (289)
+..+.|+.+.+-++ .|++=+-.++....+ ++.+.+.++-.++. ++++.. ...+ +.+.+..+
T Consensus 111 ~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~--------~~~~~~a~ 182 (325)
T cd04739 111 AGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFF--------SALAHMAK 182 (325)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCc--------cCHHHHHH
Confidence 33444554444332 666666655422221 13455666655544 444432 1111 25778888
Q ss_pred HHHHcCCCEEEecCCcccC
Q 022982 109 DCKQVGFDTIELNVGSLEI 127 (289)
Q Consensus 109 ~~k~lGF~~IEISdGti~i 127 (289)
.+.+.|.|+|-+++.+..+
T Consensus 183 ~l~~~Gadgi~~~nt~~~~ 201 (325)
T cd04739 183 QLDAAGADGLVLFNRFYQP 201 (325)
T ss_pred HHHHcCCCeEEEEcCcCCC
Confidence 8999999999999987443
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=85.82 E-value=7.8 Score=35.46 Aligned_cols=103 Identities=18% Similarity=0.135 Sum_probs=64.8
Q ss_pred CceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCce---------------ecCC
Q 022982 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---------------VSTG 89 (289)
Q Consensus 25 GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~---------------v~~G 89 (289)
.++.+.+=|+. ....++.+++ +| .|. +..||..+.+++.+++-.+.+.+-.|. |.+-
T Consensus 74 ~ipv~~~GGi~---s~~~~~~~l~-~G--a~~--Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~ 145 (253)
T PRK02083 74 FIPLTVGGGIR---SVEDARRLLR-AG--ADK--VSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTH 145 (253)
T ss_pred CCCEEeeCCCC---CHHHHHHHHH-cC--CCE--EEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEc
Confidence 45666666662 4566677777 33 444 466888888888888866655211122 2222
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe----cCCcccCChhHHHHHHHHHHHc
Q 022982 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL----NVGSLEIPEETLLRYVRLVKSA 142 (289)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI----SdGti~i~~~~r~~lI~~~~~~ 142 (289)
+|.+. ......++.+.+.++|++.|=+ .+|+..-++ ..+|+.+++.
T Consensus 146 ~~~~~----~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d---~~~i~~~~~~ 195 (253)
T PRK02083 146 GGRKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYD---LELTRAVSDA 195 (253)
T ss_pred CCcee----cCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC---HHHHHHHHhh
Confidence 34432 1226778899999999999888 457777664 4566666663
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=85.81 E-value=21 Score=34.24 Aligned_cols=190 Identities=12% Similarity=0.189 Sum_probs=113.1
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCcee----cCCcH----HHHHHH----------------
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----STGDW----AEHLIR---------------- 97 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v----~~Gtl----fE~a~~---------------- 97 (289)
.++++|..|-+- +++-|.+-+++-+.++.-|+-|.+.+-++ ++|+. ++.+..
T Consensus 5 ~~k~ll~~A~~~----~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lH 80 (283)
T PRK07998 5 NGRILLDRIQEK----HVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLH 80 (283)
T ss_pred cHHHHHHHHHHC----CCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 566666655432 46777778888888888888888877432 22211 121111
Q ss_pred --hCCchHHHHHHHHHHcCCCEEEecCCcccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022982 98 --NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 98 --qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
++ .--+.+..|-+.||+.|=+ |||- +|.++ =.++++.++..|.-|--|+|.=-+ ++|...
T Consensus 81 LDH~--~~~e~i~~Ai~~GftSVM~-DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg------~ed~~~---- 146 (283)
T PRK07998 81 LDHG--KTFEDVKQAVRAGFTSVMI-DGAA-LPFEENIAFTKEAVDFAKSYGVPVEAELGAILG------KEDDHV---- 146 (283)
T ss_pred CcCC--CCHHHHHHHHHcCCCEEEE-eCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCC------cccccc----
Confidence 22 2236777888999999999 5654 56543 346778888889999999988221 222100
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-Cc-hhHHHH
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NP-RTSEWF 246 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~~G~~r~d~v~~ii~~l~~eklifEAP-~k-~qQ~~~ 246 (289)
. .. ....||++..+.++ +-|+|.+=+== -|+|.. -+++.|.+++|-+.++.-=+|==++ .+ +|....
T Consensus 147 ~---~~-~~~T~pe~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~-p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~a 218 (283)
T PRK07998 147 S---EA-DCKTEPEKVKDFVE---RTGCDMLAVSIGNVHGLEDI-PRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSF 218 (283)
T ss_pred c---cc-cccCCHHHHHHHHH---HhCcCeeehhccccccCCCC-CCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHH
Confidence 0 00 01126777655555 46888665543 289987 7788999999988765433333222 22 333334
Q ss_pred HHHhCCCcccc
Q 022982 247 IRRYGPKVNLF 257 (289)
Q Consensus 247 I~~fG~~VNLg 257 (289)
|+.==..||.+
T Consensus 219 i~~Gi~KiNi~ 229 (283)
T PRK07998 219 VNYKVAKVNIA 229 (283)
T ss_pred HHcCCcEEEEC
Confidence 44333456665
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=85.79 E-value=13 Score=36.70 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=40.6
Q ss_pred cCccccccChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 022982 60 SGGSHSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (289)
Q Consensus 60 g~GTs~l~p~~~l~eKI~l~~~~-gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (289)
+.|......++.+.+.++..++. ++++..= + -+...+.+..+.+.+.|.+.|=+.|-+..
T Consensus 144 ~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~-------p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (420)
T PRK08318 144 GMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLT-------PNITDIREPARAAKRGGADAVSLINTINS 205 (420)
T ss_pred CCcccccCCHHHHHHHHHHHHhccCCcEEEEcC-------CCcccHHHHHHHHHHCCCCEEEEecccCc
Confidence 34556667888999999999875 4544421 1 11124667778888999999987766654
|
|
| >PRK09989 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.64 E-value=1.5 Score=39.87 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (289)
.+.+.++.++++||+.||+.. ....+ ..++-+.+++.|+++.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~-~~~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF-PYDYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC-cccCC---HHHHHHHHHHcCCcEE
Confidence 789999999999999999964 33344 3457777889999865
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=85.49 E-value=19 Score=34.45 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEI 127 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i 127 (289)
.+.++.+.|++.|.|+|.+++.+..+
T Consensus 178 ~~~~~a~~l~~~G~dgI~~~n~~~~~ 203 (334)
T PRK07565 178 NLANMAKRLDAAGADGLVLFNRFYQP 203 (334)
T ss_pred hHHHHHHHHHHcCCCeEEEECCcCCC
Confidence 45788899999999999999887544
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=85.43 E-value=6.3 Score=37.42 Aligned_cols=47 Identities=15% Similarity=0.296 Sum_probs=39.8
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEec
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEA 237 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEA 237 (289)
+++++.|++||++|||=+--+. ++.+.++++.++++++|.++|+.=-
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~--~~~~~p~~v~~~~~~~G~~~Ivvsi 141 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFR--DGQIDLERLKDLVRLVGKQRLVLDL 141 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHh--CCCCCHHHHHHHHHHhCCCCEEEEE
Confidence 8899999999999999654444 4788999999999999999988733
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=85.41 E-value=11 Score=38.58 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=90.6
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
.+-+.|..+| ||.+=.||-.+.=.+.+.+++..+..+ +..++ .|. .-.+..++.-++..++.+.+.|-+.
T Consensus 27 ~ia~~L~~~G--V~~IEvG~p~~s~~d~e~v~~i~~~~~--~~~i~--al~----r~~~~did~a~~al~~~~~~~v~i~ 96 (494)
T TIGR00973 27 QIALALERLG--VDIIEAGFPVSSPGDFEAVQRIARTVK--NPRVC--GLA----RCVEKDIDAAAEALKPAEKFRIHTF 96 (494)
T ss_pred HHHHHHHHcC--CCEEEEECCCCCHHHHHHHHHHHHhCC--CCEEE--EEc----CCCHHhHHHHHHhccccCCCEEEEE
Confidence 4556777787 899998886554333444443333222 22222 121 1112245555555566688888887
Q ss_pred CCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 122 VGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 122 dGti~--------i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
-.+-+ .+.++ -.+.|+.+++.|+. .+|+-.+. .+. |++.+++
T Consensus 97 ~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~--v~f~~Ed~------------------~r~------d~~~l~~ 150 (494)
T TIGR00973 97 IATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDD--VEFSCEDA------------------GRT------EIPFLAR 150 (494)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe--EEEEcCCC------------------CCC------CHHHHHH
Confidence 66533 23333 23678888898875 24443221 011 5889999
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.++...++||+.| .|+|..|-..++.+.++++.+
T Consensus 151 ~~~~~~~~Ga~~i-----~l~DTvG~~~P~~~~~~i~~l 184 (494)
T TIGR00973 151 IVEAAINAGATTI-----NIPDTVGYALPAEYGNLIKGL 184 (494)
T ss_pred HHHHHHHcCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 9999999999865 478999999999888888654
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.29 E-value=5.6 Score=38.64 Aligned_cols=131 Identities=17% Similarity=0.279 Sum_probs=68.0
Q ss_pred ccChhHHHHHHHHHHhCCc-eecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcC
Q 022982 66 LMPKPFIEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 66 l~p~~~l~eKI~l~~~~gV-~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (289)
+++.+.+.++...+.+.|+ .++.| +|.+- ....-+.+.+-++.+|+.|...+ +|.|. ++.+. .++++++|
T Consensus 75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p-~~~~~e~i~~~i~~ik~~~i~v~-~s~G~--ls~e~----l~~LkeAG 146 (345)
T PRK15108 75 LMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLETC-MTLGT--LSESQ----AQRLANAG 146 (345)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecCCCC-CcchHHHHHHHHHHHHhCCCEEE-EeCCc--CCHHH----HHHHHHcC
Confidence 4555667777777777888 55443 34211 01111135555666677776544 77774 34433 34446777
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHH
Q 022982 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAK 223 (289)
Q Consensus 144 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ 223 (289)
+.. +++.- |+ ++.+.+.+.+ ..+.+++++.++...++|- -+-+-+|+-- |+..+|.++-
T Consensus 147 ld~---~n~~l---eT----~p~~f~~I~~-------~~~~~~rl~~i~~a~~~G~---~v~sg~i~Gl-gEt~ed~v~~ 205 (345)
T PRK15108 147 LDY---YNHNL---DT----SPEFYGNIIT-------TRTYQERLDTLEKVRDAGI---KVCSGGIVGL-GETVKDRAGL 205 (345)
T ss_pred CCE---Eeecc---cc----ChHhcCCCCC-------CCCHHHHHHHHHHHHHcCC---ceeeEEEEeC-CCCHHHHHHH
Confidence 762 22211 00 1111111110 1246778888888888884 2222345554 7777777776
Q ss_pred HH
Q 022982 224 VI 225 (289)
Q Consensus 224 ii 225 (289)
+.
T Consensus 206 ~~ 207 (345)
T PRK15108 206 LL 207 (345)
T ss_pred HH
Confidence 65
|
|
| >cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
Probab=84.92 E-value=8.5 Score=35.37 Aligned_cols=123 Identities=12% Similarity=0.154 Sum_probs=75.0
Q ss_pred HHHHHHHhhcc-----cccEEEecCccccccChhHHHHHHHHHHhCCce---ec-C-CcHHHHHHHhCCch-----HHHH
Q 022982 42 VLEDIFESMGQ-----FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---VS-T-GDWAEHLIRNGPSA-----FKEY 106 (289)
Q Consensus 42 ~~~DlLe~ag~-----yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~---v~-~-GtlfE~a~~qg~~~-----~~~y 106 (289)
.|+|+|+.+.+ +|+ +|-.-+. .-++.+.++..+++++++|.. +. . -...+.+-...|+. ...+
T Consensus 115 tL~evl~~~~~~~~~l~iE-iK~~~~~-~~~~~~~~~~v~~~l~~~~~~~~~v~~s~~~~~~~~~~~~p~~~~~~~~~~~ 192 (252)
T cd08574 115 SLAELLRLAKKHNKSVIFD-LRRPPPN-HPYYQSYVNITLDTILASGIPQHQVFWLPDEYRALVRKVAPGFQQVSGRKLP 192 (252)
T ss_pred CHHHHHHHHHHcCCeEEEE-ecCCccc-CccHHHHHHHHHHHHHHcCCCcccEEEccHHHHHHHHHHCCCCeEeeccccc
Confidence 78888887753 233 4743321 123345778899999999862 22 2 12333443334331 1233
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
....+++|++.+-++...++ .++|+.++++|++|.+ .++. +
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~g~~v~~-WTVn--------------------------------~ 233 (252)
T cd08574 193 VESLRENGISRLNLEYSQLS------AQEIREYSKANISVNL-YVVN--------------------------------E 233 (252)
T ss_pred hHHHHhcCCeEEccCcccCC------HHHHHHHHHCCCEEEE-EccC--------------------------------C
Confidence 44556788887766655442 3689999999888655 3331 1
Q ss_pred HHHHHHHHHHccCcEEEEec
Q 022982 187 LIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEa 206 (289)
.+++++.++.|+|-||..+
T Consensus 234 -~~~~~~l~~~GVdgIiTD~ 252 (252)
T cd08574 234 -PWLYSLLWCSGVQSVTTNA 252 (252)
T ss_pred -HHHHHHHHHcCCCEEecCc
Confidence 3678888999999999754
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=84.88 E-value=11 Score=40.44 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=87.0
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
+.+++.+|-|+|=+-...+ +.++..++++.+++.||.|+-|++-
T Consensus 126 I~ea~~~GADavLLI~~~L--~~~~l~~l~~~a~~lGme~LvEvh~---------------------------------- 169 (695)
T PRK13802 126 IWEARAHGADLVLLIVAAL--DDAQLKHLLDLAHELGMTVLVETHT---------------------------------- 169 (695)
T ss_pred HHHHHHcCCCEeehhHhhc--CHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 6789999999999887766 4788999999999999999999876
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCCccc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPKVNL 256 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ekl-ifEAP~k-~qQ~~~I~~fG~~VNL 256 (289)
-+.+++.+++||..|-|..|.+..- ++..+.-.+|+..+|-+.+ |-|.=-+ ..+...+.+.|.|-=|
T Consensus 170 -~~el~~a~~~ga~iiGINnRdL~tf--~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davL 238 (695)
T PRK13802 170 -REEIERAIAAGAKVIGINARNLKDL--KVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVL 238 (695)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEE
Confidence 2566778999999999999977443 4446667778888886655 4455433 4677788888877655
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=84.75 E-value=38 Score=32.44 Aligned_cols=138 Identities=13% Similarity=0.152 Sum_probs=82.2
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.+..|-++||+.|=+..-.+++.+-- =+++++.++..|.-|--|+|.=- . ++|..- .. .- .....
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg-g-----~e~~~~---~~--~~-~~~~T 155 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLG-G-----QEDDLQ---VD--EA-DALYT 155 (284)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccc-C-----cccCcc---cc--cc-cccCC
Confidence 567778899999999976654443322 23677788888999999998832 1 112100 00 00 00012
Q ss_pred cHHHHHHHHHHHHHccCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhC-CCcccc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYG-PKVNLF 257 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~~G~~r~d~v~~ii~~l~~eklifEAP-~k~qQ~~~I~~fG-~~VNLg 257 (289)
||++..+.++ +-|+|..-|== -|+|...-+++-+.+++|-+.++.--++==+. .|..|.-=.-+.| ..||++
T Consensus 156 ~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 156 DPAQAREFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVA 232 (284)
T ss_pred CHHHHHHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 5666555555 46988776543 39999888999999999988765332332222 2333332223344 467776
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.75 E-value=31 Score=33.01 Aligned_cols=174 Identities=17% Similarity=0.259 Sum_probs=97.2
Q ss_pred EEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHH-
Q 022982 57 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY- 135 (289)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~l- 135 (289)
+-++-|+...++.+...--..+++++.|+|.. -+-++ .=.+.++.|-+.||+.|=+..-. +|.++-.++
T Consensus 42 l~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~l------HLDHg--~~~e~i~~ai~~Gf~SVM~D~S~--l~~eeNi~~t 111 (283)
T PRK08185 42 IAIHPNELDFLGDNFFAYVRERAKRSPVPFVI------HLDHG--ATIEDVMRAIRCGFTSVMIDGSL--LPYEENVALT 111 (283)
T ss_pred EEeCcchhhhccHHHHHHHHHHHHHCCCCEEE------ECCCC--CCHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHHH
Confidence 33444444444444444455566677776653 01111 11345666778999999887655 566666554
Q ss_pred ---HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc-cccccHHHHHHHHHHHHHc-cCcEEEEe---cc
Q 022982 136 ---VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST-EYVEDVDLLIRRAERCLEA-GADMIMID---SD 207 (289)
Q Consensus 136 ---I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~-~~~~~~~~~I~~~~~dLeA-GA~~ViiE---ar 207 (289)
++.++..|..|--|+|. -+.. .|.. .. ..+ ...-|| ++++++.+. |+|++-+= +-
T Consensus 112 ~~vv~~a~~~gv~vE~ElG~-vg~~-----e~~~---~~----~~~~~~~t~p----eea~~f~~~TgvD~LAvaiGt~H 174 (283)
T PRK08185 112 KEVVELAHKVGVSVEGELGT-IGNT-----GTSI---EG----GVSEIIYTDP----EQAEDFVSRTGVDTLAVAIGTAH 174 (283)
T ss_pred HHHHHHHHHcCCeEEEEEee-ccCc-----cccc---cc----ccccccCCCH----HHHHHHHHhhCCCEEEeccCccc
Confidence 45556779999889988 2221 1110 00 000 001134 555667766 99998883 35
Q ss_pred ccccC--CCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhC-CCcccc
Q 022982 208 DVCKH--ADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYG-PKVNLF 257 (289)
Q Consensus 208 GI~d~--~G~~r~d~v~~ii~~l~~eklifEAP-~k~qQ~~~I~~fG-~~VNLg 257 (289)
|+|.. .-+++-+.+.+|-+.++.--++-=.. .|..|.-=.-+.| ..||++
T Consensus 175 G~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~ 228 (283)
T PRK08185 175 GIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGKINIS 228 (283)
T ss_pred CCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeEEEeC
Confidence 89987 45788999999987765433333322 2333333233444 456665
|
|
| >PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation | Back alignment and domain information |
|---|
Probab=84.57 E-value=9.1 Score=30.55 Aligned_cols=96 Identities=23% Similarity=0.378 Sum_probs=70.3
Q ss_pred chhHHHHHHHhhc-cc-ccEEEecCccccccChhHHHHHHHHHHhC---CceecC---CcHHHHHHHhCCchHHHHHHHH
Q 022982 39 SHNVLEDIFESMG-QF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH---DVYVST---GDWAEHLIRNGPSAFKEYVEDC 110 (289)
Q Consensus 39 g~~~~~DlLe~ag-~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~---gV~v~~---GtlfE~a~~qg~~~~~~yl~~~ 110 (289)
.+..+.+.+.... +. +..+=++.|...+.| ...+++..+++. ++.+.. |++.. +++++.+
T Consensus 29 ~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~--~~~~~~~~~~~~~~~~~~i~~~t~~~~~~----------~~~l~~l 96 (166)
T PF04055_consen 29 SPEEILEEIKELKQDKGVKEIFFGGGEPTLHP--DFIELLELLRKIKKRGIRISINTNGTLLD----------EELLDEL 96 (166)
T ss_dssp HHHHHHHHHHHHHHHTTHEEEEEESSTGGGSC--HHHHHHHHHHHCTCTTEEEEEEEESTTHC----------HHHHHHH
T ss_pred CHHHHHHHHHHHhHhcCCcEEEEeecCCCcch--hHHHHHHHHHHhhccccceeeeccccchh----------HHHHHHH
Confidence 4455555555552 32 899999999999998 667777777775 775553 55443 6788889
Q ss_pred HHcCCCEEEecCCcc-----------cCChhHHHHHHHHHHHcCCcc
Q 022982 111 KQVGFDTIELNVGSL-----------EIPEETLLRYVRLVKSAGLKA 146 (289)
Q Consensus 111 k~lGF~~IEISdGti-----------~i~~~~r~~lI~~~~~~G~~v 146 (289)
+++|++.|.+|=-+. .-+.++..+.++.+++.|+..
T Consensus 97 ~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 97 KKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSET
T ss_pred HhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCc
Confidence 999999999875554 235677788999999999884
|
Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A .... |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=84.45 E-value=13 Score=33.43 Aligned_cols=91 Identities=23% Similarity=0.231 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhCCc--eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC----Ccc-c---CChhHHHHHHHHH
Q 022982 70 PFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV----GSL-E---IPEETLLRYVRLV 139 (289)
Q Consensus 70 ~~l~eKI~l~~~~gV--~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd----Gti-~---i~~~~r~~lI~~~ 139 (289)
+.+++|++.++++|+ .+|.|+.- . ++.+.++|.+.|.+-. ||- . -+++.-.++++.+
T Consensus 101 ~e~~~~v~~a~~~Gl~~I~~v~~~~---------~----~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~i 167 (223)
T PRK04302 101 ADIEAVVERAKKLGLESVVCVNNPE---------T----SAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAV 167 (223)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHH---------H----HHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHH
Confidence 347888888888888 33456621 1 1223556777777532 221 2 3345555666666
Q ss_pred HHc--CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 140 KSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 140 ~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
++. ...+..++|++. -+.+++.+++|||-|+|=+
T Consensus 168 r~~~~~~pvi~GggI~~---------------------------------~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 168 KKVNPDVKVLCGAGIST---------------------------------GEDVKAALELGADGVLLAS 203 (223)
T ss_pred HhccCCCEEEEECCCCC---------------------------------HHHHHHHHcCCCCEEEEeh
Confidence 653 466666666632 2555667789999988744
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=84.40 E-value=9.3 Score=36.71 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=55.3
Q ss_pred EecCccccccChhHHHHHHHHHHhC---Cceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----
Q 022982 58 KFSGGSHSLMPKPFIEEVVKRAHQH---DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI---- 127 (289)
Q Consensus 58 Kfg~GTs~l~p~~~l~eKI~l~~~~---gV~v~--~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i---- 127 (289)
|-|.|++.+-.++.+.+.++-.++. +++|+ . .||- ..+...++.+.+.+.|.+.|-|+.+|-.=
T Consensus 105 ~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g 178 (312)
T PRK10550 105 GSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------SGERKFEIADAVQQAGATELVVHGRTKEDGYRA 178 (312)
T ss_pred cCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------CchHHHHHHHHHHhcCCCEEEECCCCCccCCCC
Confidence 7788888899999999999888874 35444 2 2441 11245688888999999999999887522
Q ss_pred ChhHHHHHHHHHHHc
Q 022982 128 PEETLLRYVRLVKSA 142 (289)
Q Consensus 128 ~~~~r~~lI~~~~~~ 142 (289)
+.-++ ++|++++++
T Consensus 179 ~~~~~-~~i~~ik~~ 192 (312)
T PRK10550 179 EHINW-QAIGEIRQR 192 (312)
T ss_pred CcccH-HHHHHHHhh
Confidence 22233 788888884
|
|
| >PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP | Back alignment and domain information |
|---|
Probab=83.98 E-value=2.5 Score=38.11 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=70.6
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHH---HHHHcC
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVE---DCKQVG 114 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~Gt-lfE~a~~qg~~~~~~yl~---~~k~lG 114 (289)
....+.++++..++|+|++|+|+--..-+..+.+++-++.+++++.++.--. +..+ |+-+..|.+ .+.++|
T Consensus 11 ~~~~a~~i~~~~~~~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~~~~I~~D~K~~Di-----g~t~~~~~~~~~~~~~~g 85 (226)
T PF00215_consen 11 DLEEALRIADELGDYVDIIKVGTPLFLAYGLEALPEIIEELKERGKPIFLDLKLGDI-----GNTVARYAEAGFAAFELG 85 (226)
T ss_dssp SHHHHHHHHHHHGGGSSEEEEEHHHHHHHCHHHHHHHHHHHHHTTSEEEEEEEE-SS-----HHHHHHHHHSCHHHHTTT
T ss_pred CHHHHHHHHHHhcCcceEEEEChHHHhcCChhhHHHHHHHHHHhcCCEeeeeeeccc-----chHHHHHHHHhhhhhcCC
Confidence 4567889999999999999999877777776689999999999997665421 2211 112334444 567889
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHcC
Q 022982 115 FDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (289)
+|++-|+-- .+.+....+++.+++.|
T Consensus 86 aD~vTv~~~---~G~~tl~~~~~~a~~~~ 111 (226)
T PF00215_consen 86 ADAVTVHPF---AGDDTLEAAVKAAKKHG 111 (226)
T ss_dssp ESEEEEEGT---THHHHHHHHHHHHHHTT
T ss_pred CcEEEEecc---CCHHHHHHHHHHHhccC
Confidence 999988643 34777778888888876
|
In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A .... |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=83.85 E-value=8.2 Score=36.33 Aligned_cols=115 Identities=22% Similarity=0.295 Sum_probs=80.6
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
+++| +.+++..|=|+|=+-... ++.++..++++.+.+.||.++-|++-
T Consensus 119 id~~QI~eA~~~GADaVLLI~~~--L~~~~l~~l~~~a~~lGle~lVEVh~----------------------------- 167 (254)
T PF00218_consen 119 IDPYQIYEARAAGADAVLLIAAI--LSDDQLEELLELAHSLGLEALVEVHN----------------------------- 167 (254)
T ss_dssp -SHHHHHHHHHTT-SEEEEEGGG--SGHHHHHHHHHHHHHTT-EEEEEESS-----------------------------
T ss_pred CCHHHHHHHHHcCCCEeehhHHh--CCHHHHHHHHHHHHHcCCCeEEEECC-----------------------------
Confidence 3444 678999999999887665 55677789999999999999999876
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCc-eEEecCCc-hhHHHHHHHhCCCccc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEK-TMFEATNP-RTSEWFIRRYGPKVNL 256 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ek-lifEAP~k-~qQ~~~I~~fG~~VNL 256 (289)
-+.+++.+++||+.|-|-.|.+-.- ++..+...+++..+|.+. +|-|.=-+ ..+...+++.|.|-=|
T Consensus 168 ------~~El~~al~~~a~iiGINnRdL~tf--~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davL 236 (254)
T PF00218_consen 168 ------EEELERALEAGADIIGINNRDLKTF--EVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVL 236 (254)
T ss_dssp ------HHHHHHHHHTT-SEEEEESBCTTTC--CBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEE
T ss_pred ------HHHHHHHHHcCCCEEEEeCccccCc--ccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEE
Confidence 2556778899999999999976433 344556677888888554 44555433 4677777777776544
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.80 E-value=9.3 Score=35.69 Aligned_cols=148 Identities=18% Similarity=0.219 Sum_probs=86.9
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCC---ceecCCcHHHHHHHhCCc-hHHHHHHHHHHcCCCE
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTGDWAEHLIRNGPS-AFKEYVEDCKQVGFDT 117 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g---V~v~~GtlfE~a~~qg~~-~~~~yl~~~k~lGF~~ 117 (289)
.+-+.|..+| ||.+=+||+.+. |.+ .+-++.+.+.+ .... .|.-. -..+-. .-+.-++.+.+.|.+.
T Consensus 24 ~i~~~L~~~G--v~~IE~G~~~~~--~~~--~~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~a~~~g~~~ 94 (273)
T cd07941 24 RIARKLDELG--VDYIEGGWPGSN--PKD--TEFFARAKKLKLKHAKLA--AFGST-RRAGVKAEEDPNLQALLEAGTPV 94 (273)
T ss_pred HHHHHHHHcC--CCEEEecCCcCC--HHH--HHHHHHHHHcCCCCcEEE--EEecc-cccCCCccchHHHHHHHhCCCCE
Confidence 4455677777 899999986533 322 22223332322 2211 11100 001100 0124577788999999
Q ss_pred EEecCCcc--------cCC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHH
Q 022982 118 IELNVGSL--------EIP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (289)
Q Consensus 118 IEISdGti--------~i~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (289)
|-|...+- ..+ .+.-.++|+++++.|++|. ++... .. |. .. .+++
T Consensus 95 i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~--~~~~~-~~------d~--------~~------~~~~ 151 (273)
T cd07941 95 VTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVI--FDAEH-FF------DG--------YK------ANPE 151 (273)
T ss_pred EEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--EeEEe-cc------cc--------CC------CCHH
Confidence 99864432 122 2234678899999998652 22210 00 00 01 1588
Q ss_pred HHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 186 ~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
.+++.+++..++|++.|. |.|..|...+..+.++++
T Consensus 152 ~~~~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~lv~ 187 (273)
T cd07941 152 YALATLKAAAEAGADWLV-----LCDTNGGTLPHEIAEIVK 187 (273)
T ss_pred HHHHHHHHHHhCCCCEEE-----EecCCCCCCHHHHHHHHH
Confidence 889999999999999764 789999999999988885
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=83.62 E-value=13 Score=34.27 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~-i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
...+..+...+.|++.+=|-|=+-. .....-.++|+++++. .++-+..+. -..+
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~-----~~~pv~~~G------------Gi~s-------- 85 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET-----VFIPLTVGG------------GIKS-------- 85 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh-----cCCCEEEEC------------CCCC--------
Confidence 4556666677899999988776644 2455556788888773 112221110 0111
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP 238 (289)
++.+++.+++||+.|++ ++.... +.+++.++.++.|.+++++--.
T Consensus 86 -------~~d~~~~~~~Ga~~viv-gt~~~~-----~p~~~~~~~~~~~~~~iv~slD 130 (254)
T TIGR00735 86 -------IEDVDKLLRAGADKVSI-NTAAVK-----NPELIYELADRFGSQCIVVAID 130 (254)
T ss_pred -------HHHHHHHHHcCCCEEEE-ChhHhh-----ChHHHHHHHHHcCCCCEEEEEE
Confidence 57777888999999999 554544 2678899998888888887554
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=83.57 E-value=3.5 Score=39.49 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHH
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKS 141 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------i~~~~r~~lI~~~~~ 141 (289)
..-++.+.+.+.|.|+||||.|..+ ++......+.+.+++
T Consensus 242 e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~ 287 (336)
T cd02932 242 DSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ 287 (336)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHh
Confidence 3456666777889999999988542 223334566666666
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.41 E-value=29 Score=33.23 Aligned_cols=137 Identities=14% Similarity=0.138 Sum_probs=83.9
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 179 (289)
-+.+..|-+.||+.|=+..-.+ |.++= .++++.++..|.-|--|+|.=- ..+-+...+.. . .
T Consensus 87 ~e~i~~ai~~GftSVMiDgS~l--p~eeNi~~T~~vv~~Ah~~gvsVEaElG~ig-g~e~~~~~~~~------~-----~ 152 (284)
T PRK12737 87 LDDIKKKVRAGIRSVMIDGSHL--SFEENIAIVKEVVEFCHRYDASVEAELGRLG-GQEDDLVVDEK------D-----A 152 (284)
T ss_pred HHHHHHHHHcCCCeEEecCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEEEeecc-CccCCcccccc------c-----c
Confidence 3677888999999999976654 44443 3677788889999999999832 11101000000 0 0
Q ss_pred ccccHHHHHHHHHHHHHccCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhC-CCc
Q 022982 180 YVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYG-PKV 254 (289)
Q Consensus 180 ~~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~~G~~r~d~v~~ii~~l~~eklifEAP-~k~qQ~~~I~~fG-~~V 254 (289)
...||++..+.+++ -|+|.+-|== -|+|...-+++-+.+++|-+.++.--++==+. .|..|.-=.-++| ..|
T Consensus 153 ~~T~peeA~~Fv~~---TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 153 MYTNPDAAAEFVER---TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred cCCCHHHHHHHHHH---hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 01268777777764 6888776543 39999888899999999988765322322222 2333332223344 456
Q ss_pred ccc
Q 022982 255 NLF 257 (289)
Q Consensus 255 NLg 257 (289)
|++
T Consensus 230 Ni~ 232 (284)
T PRK12737 230 NVA 232 (284)
T ss_pred EeC
Confidence 665
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=83.40 E-value=14 Score=35.46 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=55.7
Q ss_pred HHHHHcCCCEEEecCCccc-------------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 022982 108 EDCKQVGFDTIELNVGSLE-------------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti~-------------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
+.+.+.||+.|||+=|+=. -.++.-.++++.+++. .. +| +++|-.. |
T Consensus 84 ~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-~d-~p-v~vKiR~---G-------------- 143 (321)
T PRK10415 84 RINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-VD-VP-VTLKIRT---G-------------- 143 (321)
T ss_pred HHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh-cC-Cc-eEEEEEc---c--------------
Confidence 3446789999999999631 1144555667766553 11 12 5665421 1
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecc---ccccCCCCccHHHHHHHHhcc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar---GI~d~~G~~r~d~v~~ii~~l 228 (289)
|. .+..+.++.++..-++|++.|.+-+| +.|. |....+.+.++.+.+
T Consensus 144 -~~----~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~--G~a~~~~i~~ik~~~ 193 (321)
T PRK10415 144 -WA----PEHRNCVEIAQLAEDCGIQALTIHGRTRACLFN--GEAEYDSIRAVKQKV 193 (321)
T ss_pred -cc----CCcchHHHHHHHHHHhCCCEEEEecCccccccC--CCcChHHHHHHHHhc
Confidence 10 01234567777778999999999998 3443 333445666665544
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=83.28 E-value=25 Score=34.87 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--cCChhHHHHHHHHHHHc-CCccc
Q 022982 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--EIPEETLLRYVRLVKSA-GLKAK 147 (289)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--~i~~~~r~~lI~~~~~~-G~~v~ 147 (289)
.+.+-++.++++|+.+.+|- + ++..-.+..+.+.++|.|+|-+.-|+- ..+. .-.+.++++++. ++.+.
T Consensus 95 ~~~~~i~~a~~~G~~~~~g~-----~--s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~-~~~~~l~~l~~~~~iPI~ 166 (430)
T PRK07028 95 TIEDAVRAARKYGVRLMADL-----I--NVPDPVKRAVELEELGVDYINVHVGIDQQMLGK-DPLELLKEVSEEVSIPIA 166 (430)
T ss_pred HHHHHHHHHHHcCCEEEEEe-----c--CCCCHHHHHHHHHhcCCCEEEEEeccchhhcCC-ChHHHHHHHHhhCCCcEE
Confidence 36677788888887665541 1 111112234566778999997776642 1111 123456666552 12121
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHH--HHHHHH
Q 022982 148 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRAD--IIAKVI 225 (289)
Q Consensus 148 ~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d--~v~~ii 225 (289)
...|+ + .+.+...+++||+.|++ ++.|+++. +++.- .+.+.+
T Consensus 167 a~GGI-------------------~---------------~~n~~~~l~aGAdgv~v-GsaI~~~~-d~~~~~~~l~~~i 210 (430)
T PRK07028 167 VAGGL-------------------D---------------AETAAKAVAAGADIVIV-GGNIIKSA-DVTEAARKIREAI 210 (430)
T ss_pred EECCC-------------------C---------------HHHHHHHHHcCCCEEEE-ChHHcCCC-CHHHHHHHHHHHH
Confidence 11122 1 36677889999998876 45688764 33322 233444
Q ss_pred hccCCCce--EEecCCchh
Q 022982 226 GRLGLEKT--MFEATNPRT 242 (289)
Q Consensus 226 ~~l~~ekl--ifEAP~k~q 242 (289)
++..+-|+ .|+.|.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~ 229 (430)
T PRK07028 211 DSGKPVKIDKFKKSLDEEI 229 (430)
T ss_pred hccCCccccccccCCCHHH
Confidence 55444443 688887754
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=83.26 E-value=18 Score=34.14 Aligned_cols=148 Identities=16% Similarity=0.260 Sum_probs=92.3
Q ss_pred chhHHHHHHHhhcc-cccEEEecCcccc-ccChhHHHH-----------------HHHHHH--hCCceecCCcHHHHHHH
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHS-LMPKPFIEE-----------------VVKRAH--QHDVYVSTGDWAEHLIR 97 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GTs~-l~p~~~l~e-----------------KI~l~~--~~gV~v~~GtlfE~a~~ 97 (289)
.+..+.+++..+-+ -+|++=+|+=.|= +.+-..+++ .++-.| ..++++..=|++...+.
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~ 101 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ 101 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc
Confidence 56677777776655 8999999975431 222122222 222222 34455555588888888
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
.| +++|++.|++.|++.+=| -+||.|+...+.+.++++|+...+=+...
T Consensus 102 ~G---~e~F~~~~~~aGvdGlIi----pDLP~ee~~~~~~~~~~~gl~~I~lv~p~------------------------ 150 (259)
T PF00290_consen 102 YG---IERFFKEAKEAGVDGLII----PDLPPEESEELREAAKKHGLDLIPLVAPT------------------------ 150 (259)
T ss_dssp H----HHHHHHHHHHHTEEEEEE----TTSBGGGHHHHHHHHHHTT-EEEEEEETT------------------------
T ss_pred cc---hHHHHHHHHHcCCCEEEE----cCCChHHHHHHHHHHHHcCCeEEEEECCC------------------------
Confidence 86 999999999999998877 46888999999999999998876644331
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc-ccccCCCCccHHHHHHHHh
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-GI~d~~G~~r~d~v~~ii~ 226 (289)
+++++|+.+. +.+..+|=.=++ |++-....+.. .+.+.++
T Consensus 151 -----t~~~Ri~~i~---~~a~gFiY~vs~~GvTG~~~~~~~-~l~~~i~ 191 (259)
T PF00290_consen 151 -----TPEERIKKIA---KQASGFIYLVSRMGVTGSRTELPD-ELKEFIK 191 (259)
T ss_dssp -----S-HHHHHHHH---HH-SSEEEEESSSSSSSTTSSCHH-HHHHHHH
T ss_pred -----CCHHHHHHHH---HhCCcEEEeeccCCCCCCcccchH-HHHHHHH
Confidence 2555566554 444556665555 77776665543 3444444
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.23 E-value=16 Score=34.81 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=100.1
Q ss_pred HHHHHHhh-cccccEEEecCccccccChh-----------HHHHHHHHHHhCCceecCCc-----H-HHHHHHhCCchHH
Q 022982 43 LEDIFESM-GQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGD-----W-AEHLIRNGPSAFK 104 (289)
Q Consensus 43 ~~DlLe~a-g~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~Gt-----l-fE~a~~qg~~~~~ 104 (289)
++..+++. |-=.+.+.+-..+|-.+.+. .+++.+++++++|.. |.++ | .|-+-.-+++.+.
T Consensus 81 ie~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~-~~~~~~~~~~~~EDasr~~~~~l~ 159 (284)
T cd07942 81 IERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAK-YPETDWRFEYSPESFSDTELDFAL 159 (284)
T ss_pred HHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccc-ccCceEEEEECCccCCCCCHHHHH
Confidence 44445442 22223566666665444332 366788899999874 2110 1 2334344456788
Q ss_pred HHHHHHHHc---C---CCEEEecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 105 EYVEDCKQV---G---FDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 105 ~yl~~~k~l---G---F~~IEISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
++++.+.+. | .+.|=++|-.--..+.+-.++|+.+++. +-....+++..+
T Consensus 160 ~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~----------------------- 216 (284)
T cd07942 160 EVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHP----------------------- 216 (284)
T ss_pred HHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEe-----------------------
Confidence 888888887 5 4488899999888888888999998873 111112345433
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhccC
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
=.|....+..+-..++|||++| ++- |+=+..||.-++.+-..+...+
T Consensus 217 ---Hnd~G~a~AN~laA~~aG~~~i--d~~~~g~GeRaGN~~~E~lv~~l~~~g 265 (284)
T cd07942 217 ---HNDRGTGVAAAELALLAGADRV--EGTLFGNGERTGNVDLVTLALNLYSQG 265 (284)
T ss_pred ---cCCCchHHHHHHHHHHhCCCEE--EeeCccCCccccchhHHHHHHHHHhcC
Confidence 1234445778888999999985 554 7755589998887776665544
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=83.22 E-value=23 Score=28.82 Aligned_cols=99 Identities=21% Similarity=0.375 Sum_probs=73.4
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC--Ccee--cC-CcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v--~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (289)
..+...+....++..+=|++|...+.+ .+.+.++.+++. ++.+ .+ |..+ + ++.++.+.+.|++
T Consensus 33 ~~~~~~~~~~~~~~~i~~~ggep~~~~--~~~~~i~~~~~~~~~~~~~i~T~~~~~------~----~~~~~~l~~~g~~ 100 (204)
T cd01335 33 ILDIVLEAKERGVEVVILTGGEPLLYP--ELAELLRRLKKELPGFEISIETNGTLL------T----EELLKELKELGLD 100 (204)
T ss_pred HHHHHHHHHhcCceEEEEeCCcCCccH--hHHHHHHHHHhhCCCceEEEEcCcccC------C----HHHHHHHHhCCCc
Confidence 334445556678888889999999888 788999999988 6544 34 2222 2 5677788888999
Q ss_pred EEEecCCccc-----------CChhHHHHHHHHHHHcCCcccceeee
Q 022982 117 TIELNVGSLE-----------IPEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 117 ~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
.|.+|--+.+ .+.++..+.|+++++.|..+.+.+-+
T Consensus 101 ~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 147 (204)
T cd01335 101 GVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLV 147 (204)
T ss_pred eEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEE
Confidence 9999877653 34478888999999988887776655
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.00 E-value=13 Score=35.12 Aligned_cols=142 Identities=12% Similarity=0.124 Sum_probs=86.5
Q ss_pred HHHHHhhcccccEEEecCccccccCh--hHHHHHHHHHHhC----CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 44 EDIFESMGQFVDGLKFSGGSHSLMPK--PFIEEVVKRAHQH----DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GTs~l~p~--~~l~eKI~l~~~~----gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
+.|++.+| ||.+=+|+ .++-|+ +.+++..+...-. ++.+. .| ..+ +.-++.+++.|.+.
T Consensus 26 ~~L~~~~G--v~~IEvg~--~~~s~~e~~av~~~~~~~~~~~~~~~~~~~--a~-----~~~----~~~~~~A~~~g~~~ 90 (280)
T cd07945 26 KILLQELK--VDRIEVAS--ARVSEGEFEAVQKIIDWAAEEGLLDRIEVL--GF-----VDG----DKSVDWIKSAGAKV 90 (280)
T ss_pred HHHHHHhC--CCEEEecC--CCCCHHHHHHHHHHHHHhhhhccccCcEEE--Ee-----cCc----HHHHHHHHHCCCCE
Confidence 33457777 88888884 334442 3344444432211 22221 12 222 34588899999999
Q ss_pred EEecCCc------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHH
Q 022982 118 IELNVGS------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (289)
Q Consensus 118 IEISdGt------------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (289)
|-++-.+ .+=..+.-.++|+.+++.|++| .++..+ .+ .|++. +++
T Consensus 91 i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v--~~~~~d-~~--------------~~~r~------~~~ 147 (280)
T cd07945 91 LNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEV--NIYLED-WS--------------NGMRD------SPD 147 (280)
T ss_pred EEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEE--EEEEEe-CC--------------CCCcC------CHH
Confidence 9887532 1222223345688999998763 455532 10 02211 588
Q ss_pred HHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 186 ~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.+++.+++..++||+.|- |.|..|-..+..+.++++.+
T Consensus 148 ~~~~~~~~~~~~G~~~i~-----l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 148 YVFQLVDFLSDLPIKRIM-----LPDTLGILSPFETYTYISDM 185 (280)
T ss_pred HHHHHHHHHHHcCCCEEE-----ecCCCCCCCHHHHHHHHHHH
Confidence 899999999999999764 67888888888887777654
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=82.87 E-value=5.1 Score=36.55 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
...+..+.+.+-|+++|||.- ..+...+.|+++++.. |++-+ |+ |..++
T Consensus 21 ~a~~~~~al~~~Gi~~iEit~-----~t~~a~~~i~~l~~~~----~~~~v-------GA------GTVl~--------- 69 (204)
T TIGR01182 21 DALPLAKALIEGGLRVLEVTL-----RTPVALDAIRLLRKEV----PDALI-------GA------GTVLN--------- 69 (204)
T ss_pred HHHHHHHHHHHcCCCEEEEeC-----CCccHHHHHHHHHHHC----CCCEE-------EE------EeCCC---------
Confidence 455667888999999999976 4466778999998741 23222 10 12223
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEec
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.+++++.++|||++++-=+
T Consensus 70 ------~~~a~~a~~aGA~FivsP~ 88 (204)
T TIGR01182 70 ------PEQLRQAVDAGAQFIVSPG 88 (204)
T ss_pred ------HHHHHHHHHcCCCEEECCC
Confidence 5788999999999997544
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=82.86 E-value=31 Score=33.38 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=77.1
Q ss_pred CccccccChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhC--CchHHHHHHHHHHcCCCE-----EEecC----Ccc--
Q 022982 61 GGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDT-----IELNV----GSL-- 125 (289)
Q Consensus 61 ~GTs~l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg--~~~~~~yl~~~k~lGF~~-----IEISd----Gti-- 125 (289)
.|...-.+-+.+.+.++..+++. +.++.=+..|+..... ....++-++.+|+.|++. +|+-+ ..+
T Consensus 103 ~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~ 182 (351)
T TIGR03700 103 GGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICP 182 (351)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCC
Confidence 55555556678899999999874 5555446788775442 124688899999999874 55533 111
Q ss_pred -cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 -EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 -~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
..+.++|.+.|+.+++.|+++.+= ...+..| +++++++.+..--+.+.+
T Consensus 183 ~~~~~~~~l~~i~~a~~~Gi~~~sg--~i~GlgE------------------------t~edrv~~l~~Lr~l~~~ 232 (351)
T TIGR03700 183 EKISAERWLEIHRTAHELGLKTNAT--MLYGHIE------------------------TPAHRVDHMLRLRELQDE 232 (351)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcceE--EEeeCCC------------------------CHHHHHHHHHHHHHhhHh
Confidence 467788899999999999997663 3333221 366777777766666664
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=82.58 E-value=4.4 Score=36.71 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=46.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+...+..+.+.+-|+.+|||.--+ ....+.|+.+++. .|++-+ |+ |..++
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~~t-----~~a~~~I~~l~~~----~p~~~v-------GA------GTV~~-------- 69 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITLRT-----PNALEAIEALRKE----FPDLLV-------GA------GTVLT-------- 69 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEETTS-----TTHHHHHHHHHHH----HTTSEE-------EE------ES--S--------
T ss_pred HHHHHHHHHHHHCCCCEEEEecCC-----ccHHHHHHHHHHH----CCCCee-------EE------EeccC--------
Confidence 456677788999999999997654 5567899988874 234333 10 12222
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEec
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.+++++.++|||++++-=+
T Consensus 70 -------~e~a~~a~~aGA~FivSP~ 88 (196)
T PF01081_consen 70 -------AEQAEAAIAAGAQFIVSPG 88 (196)
T ss_dssp -------HHHHHHHHHHT-SEEEESS
T ss_pred -------HHHHHHHHHcCCCEEECCC
Confidence 6899999999999999765
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase | Back alignment and domain information |
|---|
Probab=82.58 E-value=5.6 Score=37.07 Aligned_cols=68 Identities=16% Similarity=0.062 Sum_probs=53.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
...+.+...|||.|-|.-=--.++.++...+|+.++..|..++--+-- .|
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~----------~~-------------------- 73 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW----------NE-------------------- 73 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC----------CC--------------------
Confidence 455666789999999999999999999999999999888765433311 11
Q ss_pred HHHHHHHHHHHHccCcEEEEe
Q 022982 185 DLLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiE 205 (289)
-..+++.||+||+-||+=
T Consensus 74 ---~~~i~r~LD~Ga~gIivP 91 (249)
T TIGR03239 74 ---PVIIKRLLDIGFYNFLIP 91 (249)
T ss_pred ---HHHHHHHhcCCCCEEEec
Confidence 256788999999999973
|
In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which |
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.58 E-value=30 Score=33.73 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=73.0
Q ss_pred hhcccccEEEecCccccccChhHHHHHHHHHHhCC--ceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCC-----EEE
Q 022982 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD-----TIE 119 (289)
Q Consensus 49 ~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g--V~v~~--GtlfE~a~~qg~~~~~~yl~~~k~lGF~-----~IE 119 (289)
......+-+=+.+|-..-++.+.+.+.++..+++. +.+.. -+=..++...+.-..++-++..|+.|.+ .+|
T Consensus 85 a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE 164 (348)
T PRK08445 85 LLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAE 164 (348)
T ss_pred HHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCcee
Confidence 34445677778888888888889999999888875 54432 2223434332312458999999999998 278
Q ss_pred ecCCc----c---cCChhHHHHHHHHHHHcCCcccce
Q 022982 120 LNVGS----L---EIPEETLLRYVRLVKSAGLKAKPK 149 (289)
Q Consensus 120 ISdGt----i---~i~~~~r~~lI~~~~~~G~~v~~E 149 (289)
+++.. + ..+.++|.+.++.+++.|+++-+=
T Consensus 165 ~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg 201 (348)
T PRK08445 165 ILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTAT 201 (348)
T ss_pred eCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeE
Confidence 66642 2 678889999999999999997774
|
|
| >TIGR01501 MthylAspMutase methylaspartate mutase, S subunit | Back alignment and domain information |
|---|
Probab=82.51 E-value=5.5 Score=34.09 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=53.3
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
|.+-+.-+|+.+|-= .+=+|- -.| .++-++.++++++.+-. ..+. .+.-..+++..+.+++.|...
T Consensus 17 Gk~iv~~~l~~~Gfe--Vi~LG~----~v~---~e~~v~aa~~~~adiVglS~l~----~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 17 GNKILDHAFTNAGFN--VVNLGV----LSP---QEEFIKAAIETKADAILVSSLY----GHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred hHHHHHHHHHHCCCE--EEECCC----CCC---HHHHHHHHHHcCCCEEEEeccc----ccCHHHHHHHHHHHHHCCCCC
Confidence 445566666666632 333342 122 45566666777664422 2221 111113566777778887743
Q ss_pred EEe-cCCcccCChhHHHHHHHHHHHcCCc
Q 022982 118 IEL-NVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 118 IEI-SdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
+=| =-|.+.+|+++.....+++++.||.
T Consensus 84 ~~vivGG~~vi~~~d~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 84 ILLYVGGNLVVGKQDFPDVEKRFKEMGFD 112 (134)
T ss_pred CEEEecCCcCcChhhhHHHHHHHHHcCCC
Confidence 333 6777788888877777788887654
|
This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. |
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=82.41 E-value=13 Score=38.42 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=87.6
Q ss_pred HHHHHHHHhCCceecC-C-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 022982 73 EEVVKRAHQHDVYVST-G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (289)
Q Consensus 73 ~eKI~l~~~~gV~v~~-G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (289)
.+-+++++++|..|.. . .||+ ++.-+|+.+.++++.+.+.|-+.|=|.|-.--+.+.+-.++|+.++++ +. .+.+
T Consensus 125 ~~~v~~ak~~g~~V~~~~e~f~D-~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~-~~-~~~i 201 (526)
T TIGR00977 125 YDTVAYLKRQGDEVIYDAEHFFD-GYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRS-LK-QPQL 201 (526)
T ss_pred HHHHHHHHHcCCeEEEEeeeeee-cccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHh-CC-CCEE
Confidence 4568899999998764 2 3533 334566789999999999999999999998888999999999999874 22 2335
Q ss_pred eeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHH
Q 022982 151 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIA 222 (289)
Q Consensus 151 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~ 222 (289)
++.+. . |....+-.....++|||+. ||+- ||=+..||.....+.
T Consensus 202 ~vH~H-N-------------------------D~GlAvANslaAv~AGA~~--Vd~TinGiGERaGNa~Le~v~ 247 (526)
T TIGR00977 202 GIHAH-N-------------------------DSGTAVANSLLAVEAGATM--VQGTINGYGERCGNANLCSLI 247 (526)
T ss_pred EEEEC-C-------------------------CCChHHHHHHHHHHhCCCE--EEEecccccCccCCCcHHHHH
Confidence 55431 1 1233367777899999997 5664 888888887765543
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=82.34 E-value=47 Score=31.68 Aligned_cols=136 Identities=15% Similarity=0.227 Sum_probs=83.3
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.+..|-+.||+.|=|....+++.+-- =.++++.++..|.-|--|+|.=-+ .+|... . . .....
T Consensus 83 ~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g------~e~~~~----~--~--~~~~T 148 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGG------EEDGVV----G--D--EGLLT 148 (276)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecC------ccCCcc----c--c--cccCC
Confidence 556677899999999987665443322 246788889999999999998321 112100 0 0 01122
Q ss_pred cHHHHHHHHHHHHHccCcEEEEec---cccccC-CCCccHHHHHHHHhccCCCceEEecC-Cc-hhHHHHHHHhCCCccc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDS---DDVCKH-ADSLRADIIAKVIGRLGLEKTMFEAT-NP-RTSEWFIRRYGPKVNL 256 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~-~G~~r~d~v~~ii~~l~~eklifEAP-~k-~qQ~~~I~~fG~~VNL 256 (289)
||++..+.+++ -|+|.+-+=- -|+|.. .-+++.+++.+|-+.++.--++==+. .+ +|....|+.==.+||+
T Consensus 149 ~pe~a~~Fv~~---TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 149 DPEEAEEFVEE---TGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred CHHHHHHHHHH---HCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 57666655553 4888776643 389988 77899999999998775333333222 23 3344444432345776
Q ss_pred c
Q 022982 257 F 257 (289)
Q Consensus 257 g 257 (289)
+
T Consensus 226 ~ 226 (276)
T cd00947 226 N 226 (276)
T ss_pred C
Confidence 5
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.31 E-value=2.2 Score=42.22 Aligned_cols=157 Identities=17% Similarity=0.130 Sum_probs=100.1
Q ss_pred CCCCCCCCCceeEecCCCCCCCchhHHHHHHHh----hcccccEEEecCccccccChhHHHHHHHHHHhCCc-eecC-Cc
Q 022982 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFES----MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVST-GD 90 (289)
Q Consensus 17 R~~KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~----ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~-Gt 90 (289)
|..|....++|.|.+-.+ .+.++... ||=|.+- +-...++++++.++++++-+.+.|+ .+.. ||
T Consensus 46 r~~~~~~~~vtyv~n~~i-------n~TN~C~~~C~fCaF~~~~---~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG 115 (370)
T COG1060 46 RRRKRVGDGVTYVVNRNI-------NYTNICVNDCTFCAFYRKP---GDPKAYTLSPEEILEEVREAVKRGITEVLIVGG 115 (370)
T ss_pred HHhhccCCcEEEEEeecC-------CcchhhcCCCCccccccCC---CCccccccCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 446677789999999888 33344443 3334443 3335577888889999999999999 4543 43
Q ss_pred --------HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 022982 91 --------WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162 (289)
Q Consensus 91 --------lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~ 162 (289)
|+|-++.. --++|. .+.-.+|+..||.--+.......+ +.+++++++|+-..|+.|-.-...+|
T Consensus 116 ~~p~~~~~y~~~~~~~---ik~~~p-~~~i~a~s~~ei~~~~~~~~~s~~-E~l~~Lk~aGldsmpg~~aeil~e~v--- 187 (370)
T COG1060 116 EHPELSLEYYEELFRT---IKEEFP-DLHIHALSAGEILFLAREGGLSYE-EVLKRLKEAGLDSMPGGGAEILSEEV--- 187 (370)
T ss_pred cCCCcchHHHHHHHHH---HHHhCc-chhhcccCHHHhHHHHhccCCCHH-HHHHHHHHcCCCcCcCcceeechHHH---
Confidence 23333222 111233 344488998888766655444443 56788899999999988753211111
Q ss_pred cccccccccccCCCCccccccHHHHHHHHHHHHHccCcEE
Q 022982 163 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (289)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~V 202 (289)
...+.|.+. ++++|++.+++.-++|-..+
T Consensus 188 -----r~~~~p~K~------~~~~wle~~~~Ah~lGI~~t 216 (370)
T COG1060 188 -----RKIHCPPKK------SPEEWLEIHERAHRLGIPTT 216 (370)
T ss_pred -----HHhhCCCCC------CHHHHHHHHHHHHHcCCCcc
Confidence 112234444 69999999999999997754
|
|
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=82.26 E-value=3.4 Score=36.02 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCEEEecCCcc-----------------cC-----ChhHHHHHHHHHHHcCCcccceeeeec
Q 022982 106 YVEDCKQVGFDTIELNVGSL-----------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (289)
Q Consensus 106 yl~~~k~lGF~~IEISdGti-----------------~i-----~~~~r~~lI~~~~~~G~~v~~E~g~k~ 154 (289)
-+.+++++||++|.++-=+- .+ +.++..++|+.++++|++|.-.+-...
T Consensus 24 ~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 24 KLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 35567889999998764211 11 238899999999999999999887743
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.26 E-value=16 Score=36.50 Aligned_cols=38 Identities=24% Similarity=0.487 Sum_probs=25.1
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.+.++..+++||+.+++ +|.||.+.. ..+.++++.+.+
T Consensus 341 ~eti~~l~~aGADivVV-GsaIf~a~D--p~~aak~l~~~i 378 (391)
T PRK13307 341 VENVEEALKAGADILVV-GRAITKSKD--VRRAAEDFLNKL 378 (391)
T ss_pred HHHHHHHHHcCCCEEEE-eHHHhCCCC--HHHHHHHHHHhh
Confidence 35577788999997766 677997653 344455555443
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=82.19 E-value=2.4 Score=41.12 Aligned_cols=119 Identities=20% Similarity=0.310 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHH---HHHHHHHcCCCEEEecCCcccCC-----hhHHHHHH
Q 022982 70 PFIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKE---YVEDCKQVGFDTIELNVGSLEIP-----EETLLRYV 136 (289)
Q Consensus 70 ~~l~eKI~l~~~~-----gV~v~~GtlfE~a~~qg~~~~~~---yl~~~k~lGF~~IEISdGti~i~-----~~~r~~lI 136 (289)
..+.|.|+-.|+. +|++++-.+.+- | ...++ +.+.+.+.|+|.|+||.|+...+ +.-...+.
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~~----G-~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~ 267 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHPG----G-LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFA 267 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCC----C-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHH
Confidence 4556666666664 345554323221 2 13444 44555566999999999985321 22234566
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc-CcEEEEeccccccCCCC
Q 022982 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHADS 215 (289)
Q Consensus 137 ~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG-A~~ViiEarGI~d~~G~ 215 (289)
+.+++. .+ +|=+++ | .+. | .+.+++.|+.| ||.|++ +|++.-
T Consensus 268 ~~ik~~-~~-ipVi~~-------G--------~i~-----------~----~~~a~~~l~~g~~D~V~~-gR~~ia---- 310 (337)
T PRK13523 268 EHIREH-AN-IATGAV-------G--------LIT-----------S----GAQAEEILQNNRADLIFI-GRELLR---- 310 (337)
T ss_pred HHHHhh-cC-CcEEEe-------C--------CCC-----------C----HHHHHHHHHcCCCChHHh-hHHHHh----
Confidence 666663 11 121111 1 111 1 36677889887 899877 554332
Q ss_pred ccHHHHHHHHhccCCC
Q 022982 216 LRADIIAKVIGRLGLE 231 (289)
Q Consensus 216 ~r~d~v~~ii~~l~~e 231 (289)
+++++.++.+.+..+
T Consensus 311 -dP~~~~k~~~~~~~~ 325 (337)
T PRK13523 311 -NPYFPRIAAKELGFE 325 (337)
T ss_pred -CccHHHHHHHHcCCC
Confidence 246677777666643
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=82.01 E-value=17 Score=34.71 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHccCcEEEEe
Q 022982 183 DVDLLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiE 205 (289)
++++.++.++..-++|.++|-+=
T Consensus 239 ~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 239 DLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC
Confidence 57888888888778999988663
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.00 E-value=35 Score=33.38 Aligned_cols=89 Identities=15% Similarity=0.241 Sum_probs=65.5
Q ss_pred ecCccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHH---hCCchHHHHHHHHHHcCCC-----EEEecCCcc---
Q 022982 59 FSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIR---NGPSAFKEYVEDCKQVGFD-----TIELNVGSL--- 125 (289)
Q Consensus 59 fg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~---qg~~~~~~yl~~~k~lGF~-----~IEISdGti--- 125 (289)
|..|-..=.+-+.+.+-++..|+. ++.+..=+-.|+++. -| -..++.++..|+.|.+ ..|+++..+
T Consensus 98 i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G-~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~ 176 (350)
T PRK05927 98 LQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSG-ISTEQALERLWDAGQRTIPGGGAEILSERVRKI 176 (350)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcC-CCHHHHHHHHHHcCcccCCCCCchhCCHHHhhc
Confidence 556666556667788888888864 454443245555522 23 4689999999999998 899998544
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccc
Q 022982 126 ----EIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
..+.++|++.|+.|++.|+++-+
T Consensus 177 ~~p~k~~~~~rl~~i~~A~~lGi~~~s 203 (350)
T PRK05927 177 ISPKKMGPDGWIQFHKLAHRLGFRSTA 203 (350)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCcCc
Confidence 56779999999999999998777
|
|
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=81.90 E-value=38 Score=34.39 Aligned_cols=120 Identities=12% Similarity=0.158 Sum_probs=74.5
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCC-ceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----
Q 022982 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL----- 125 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti----- 125 (289)
+..+-|.-.+..+ +++.+++..+...+.| +.+.-+ +=.... ..+ ++.++.+++.|+..|.+.--|.
T Consensus 240 v~~~~~~Dd~f~~-~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i-~~d----~ell~~l~~aG~~~v~iGiES~~~~~L 313 (497)
T TIGR02026 240 VGFFILADEEPTI-NRKKFQEFCEEIIARNPISVTWGINTRVTDI-VRD----ADILHLYRRAGLVHISLGTEAAAQATL 313 (497)
T ss_pred CCEEEEEeccccc-CHHHHHHHHHHHHhcCCCCeEEEEecccccc-cCC----HHHHHHHHHhCCcEEEEccccCCHHHH
Confidence 4556666555544 4445666666666655 332211 111111 111 5788999999999999854443
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
..+.++-.+.|+.++++|+.+...|=+ +. |. ++.+++.+.++..++.+.+
T Consensus 314 ~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~--G~----------------P~-------et~e~~~~t~~~~~~l~~~ 368 (497)
T TIGR02026 314 DHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT--GF----------------EN-------ETDETFEETYRQLLDWDPD 368 (497)
T ss_pred HHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE--EC----------------CC-------CCHHHHHHHHHHHHHcCCC
Confidence 345677789999999999986544333 21 00 1477778888888888988
Q ss_pred EEEE
Q 022982 201 MIMI 204 (289)
Q Consensus 201 ~Vii 204 (289)
.+.+
T Consensus 369 ~~~~ 372 (497)
T TIGR02026 369 QANW 372 (497)
T ss_pred ceEE
Confidence 7665
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=81.87 E-value=11 Score=34.02 Aligned_cols=96 Identities=20% Similarity=0.306 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHcCCC---EEEec-CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 102 AFKEYVEDCKQVGFD---TIELN-VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~---~IEIS-dGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
...++.+.+.+.|++ .+.+| +|+- . ..-..+|+++++. ++++--. .+ .
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~--~-~~~~~~i~~i~~~-------~~~pv~~-----~G-----G-------- 79 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEG--R-ETMLDVVERVAEE-------VFIPLTV-----GG-----G-------- 79 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccccc--C-cccHHHHHHHHHh-------CCCCEEE-----eC-----C--------
Confidence 567788888899999 55666 3322 2 2234788888773 2211000 00 0
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP 238 (289)
+.+ .+.+++.+++||+.|++ +++++. +.+.+.++++.++-+++++--.
T Consensus 80 ---I~s----~~d~~~~l~~G~~~v~i-g~~~~~-----~p~~~~~i~~~~~~~~i~~~ld 127 (243)
T cd04731 80 ---IRS----LEDARRLLRAGADKVSI-NSAAVE-----NPELIREIAKRFGSQCVVVSID 127 (243)
T ss_pred ---CCC----HHHHHHHHHcCCceEEE-Cchhhh-----ChHHHHHHHHHcCCCCEEEEEE
Confidence 111 46667777899999988 566664 3677888888887778885543
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=81.52 E-value=20 Score=34.48 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=46.8
Q ss_pred HHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccc
Q 022982 108 EDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
+.+.+.|||.|||+-|.- .=.++.-.++++.+++. .. -+| +++|... |
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~-~~~~~p-VsvKiR~---g------------- 143 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA-VPAHLP-VTVKVRL---G------------- 143 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh-cCCCcc-eEEEEEC---C-------------
Confidence 455778999999997772 12333444556666553 10 022 6666432 1
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
| .+.++.++.++..-++|++.|.|=+|
T Consensus 144 --~-----~~~~~~~~~a~~l~~~Gvd~i~Vh~R 170 (312)
T PRK10550 144 --W-----DSGERKFEIADAVQQAGATELVVHGR 170 (312)
T ss_pred --C-----CCchHHHHHHHHHHhcCCCEEEECCC
Confidence 1 12334577888888999999999998
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=81.49 E-value=17 Score=33.62 Aligned_cols=143 Identities=15% Similarity=0.254 Sum_probs=75.2
Q ss_pred ecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccCh---hHHHHHHHHHHhCCce----ecCCcHHHHHHHhCCch
Q 022982 30 RSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK---PFIEEVVKRAHQHDVY----VSTGDWAEHLIRNGPSA 102 (289)
Q Consensus 30 ~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~---~~l~eKI~l~~~~gV~----v~~GtlfE~a~~qg~~~ 102 (289)
+|-+|=+..+.++++.+.+.-+++| .+..| +.+.+-|+.+|++|+. +.|+|-+|.
T Consensus 62 ~DvHLMv~~P~~~i~~~~~aGad~i----------t~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~-------- 123 (229)
T PRK09722 62 LDVHLMVTDPQDYIDQLADAGADFI----------TLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVES-------- 123 (229)
T ss_pred eEEEEEecCHHHHHHHHHHcCCCEE----------EECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHH--------
Confidence 4445433323446666666655554 23444 2477888999998874 557886654
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc--cCChhH--HH-HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSL--EIPEET--LL-RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti--~i~~~~--r~-~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
++.|+..+..+=+=.| .-|+- ..-++. |. ++-+...++|+.+ .+.+ |. . +.
T Consensus 124 l~~~l~~vD~VLvMsV--~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~--~IeV-----------DG---G-I~----- 179 (229)
T PRK09722 124 IKYYIHLLDKITVMTV--DPGFAGQPFIPEMLDKIAELKALRERNGLEY--LIEV-----------DG---S-CN----- 179 (229)
T ss_pred HHHHHHhcCEEEEEEE--cCCCcchhccHHHHHHHHHHHHHHHhcCCCe--EEEE-----------EC---C-CC-----
Confidence 3456655543222222 22322 222222 22 2222223444432 2233 10 0 01
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHH
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVI 225 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii 225 (289)
-+.+....+||||.+++=+.+||.++.+ ..+.++.+-
T Consensus 180 ----------~~~i~~~~~aGad~~V~Gss~iF~~~~d-~~~~i~~l~ 216 (229)
T PRK09722 180 ----------QKTYEKLMEAGADVFIVGTSGLFNLDED-IDEAWDIMT 216 (229)
T ss_pred ----------HHHHHHHHHcCCCEEEEChHHHcCCCCC-HHHHHHHHH
Confidence 4677888899999999966679974333 455555553
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=81.45 E-value=11 Score=34.64 Aligned_cols=92 Identities=11% Similarity=0.180 Sum_probs=58.5
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHH
Q 022982 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (289)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (289)
+.+...+.|++.+=|=|=.-......-..+|+++.+.-+. | +-+ +. -+.+
T Consensus 35 ~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~--~-v~v--GG------------GIrs------------- 84 (232)
T PRK13586 35 IASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFD--W-IQV--GG------------GIRD------------- 84 (232)
T ss_pred HHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCC--C-EEE--eC------------CcCC-------------
Confidence 3344456889888776544333555556888888773221 1 222 10 1111
Q ss_pred HHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEE
Q 022982 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 235 (289)
Q Consensus 186 ~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklif 235 (289)
++.+++.|++||++|+|=+.-+. ..++++++++++|.+++++
T Consensus 85 --~e~~~~~l~~Ga~kvvigt~a~~------~p~~~~~~~~~~g~~~ivv 126 (232)
T PRK13586 85 --IEKAKRLLSLDVNALVFSTIVFT------NFNLFHDIVREIGSNRVLV 126 (232)
T ss_pred --HHHHHHHHHCCCCEEEECchhhC------CHHHHHHHHHHhCCCCEEE
Confidence 57888899999999998655333 3578888888888777774
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=81.37 E-value=16 Score=33.92 Aligned_cols=79 Identities=5% Similarity=0.007 Sum_probs=44.3
Q ss_pred CCcccccccccCCCCCCCCCCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccCh--hHHHHHHHH
Q 022982 1 MSGYYYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK--PFIEEVVKR 78 (289)
Q Consensus 1 ~~~~~~~~~~f~~~~~R~~KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~--~~l~eKI~l 78 (289)
|-|-|--+-+|.|---+.-++ ++.+|-+|=+..+.++++.+.+.-+++|-+ ..| ..+.+-++.
T Consensus 47 MDG~FVPNitfGp~~i~~i~~-----~~~~DvHLMv~~P~~~i~~~~~aGad~It~----------H~Ea~~~~~~~l~~ 111 (228)
T PRK08091 47 ADGQFSPFFTVGAIAIKQFPT-----HCFKDVHLMVRDQFEVAKACVAAGADIVTL----------QVEQTHDLALTIEW 111 (228)
T ss_pred cCCCcCCccccCHHHHHHhCC-----CCCEEEEeccCCHHHHHHHHHHhCCCEEEE----------cccCcccHHHHHHH
Confidence 345555555665422222211 345677775553455677776666666532 222 247788888
Q ss_pred HHhCCc------eecCCcHHHH
Q 022982 79 AHQHDV------YVSTGDWAEH 94 (289)
Q Consensus 79 ~~~~gV------~v~~GtlfE~ 94 (289)
.|++|+ -+.|+|-+|.
T Consensus 112 Ik~~g~~~kaGlalnP~Tp~~~ 133 (228)
T PRK08091 112 LAKQKTTVLIGLCLCPETPISL 133 (228)
T ss_pred HHHCCCCceEEEEECCCCCHHH
Confidence 888876 5567776553
|
|
| >TIGR01210 conserved hypothetical protein TIGR01210 | Back alignment and domain information |
|---|
Probab=81.21 E-value=20 Score=34.36 Aligned_cols=133 Identities=20% Similarity=0.312 Sum_probs=78.7
Q ss_pred HHHHHHHhhccc-cc-EEE-ecCccc---cccChhHHHHHHHHHHhCC-c-eecCCcHHHHHHHhCCch-HHHHHHHHHH
Q 022982 42 VLEDIFESMGQF-VD-GLK-FSGGSH---SLMPKPFIEEVVKRAHQHD-V-YVSTGDWAEHLIRNGPSA-FKEYVEDCKQ 112 (289)
Q Consensus 42 ~~~DlLe~ag~y-ID-~lK-fg~GTs---~l~p~~~l~eKI~l~~~~g-V-~v~~GtlfE~a~~qg~~~-~~~yl~~~k~ 112 (289)
+++.+++..+.. -+ .+| |--|++ ...|.+.+++..+.+++.+ + .+...+ .|+. -++.++.+++
T Consensus 54 ~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i~~~l~~~~~~~~i~~es--------rpd~i~~e~L~~l~~ 125 (313)
T TIGR01210 54 QFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYIFEKIAQRDNLKEVVVES--------RPEFIDEEKLEELRK 125 (313)
T ss_pred HHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHHHHHHHhcCCcceEEEEe--------CCCcCCHHHHHHHHH
Confidence 445555554432 11 235 533332 3567788888888888876 3 211111 1222 2678888999
Q ss_pred cCCC-EEEecCCcccC-------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 022982 113 VGFD-TIELNVGSLEI-------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 113 lGF~-~IEISdGti~i-------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 178 (289)
.|++ .|+| |.=+. +.++-.+.++.++++|+.|+.-|=...|. ..
T Consensus 126 aG~~~~v~i--G~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i~G~P~------~s-------------- 183 (313)
T TIGR01210 126 IGVNVEVAV--GLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLLFKPPF------LS-------------- 183 (313)
T ss_pred cCCCEEEEE--ecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCC------CC--------------
Confidence 9997 5666 33333 34455589999999999987766443221 00
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
++ ++.+++++.++...+.+ +.|-+-.
T Consensus 184 e~-ea~ed~~~ti~~~~~l~-~~vs~~~ 209 (313)
T TIGR01210 184 EK-EAIADMISSIRKCIPVT-DTVSINP 209 (313)
T ss_pred hh-hhHHHHHHHHHHHHhcC-CcEEEEC
Confidence 00 13677778888887777 7766544
|
This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes. |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=81.20 E-value=38 Score=30.94 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=77.8
Q ss_pred ecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCce----ecCCcHHHHH---HHhCCch
Q 022982 30 RSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY----VSTGDWAEHL---IRNGPSA 102 (289)
Q Consensus 30 ~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~----v~~GtlfE~a---~~qg~~~ 102 (289)
+|-.+=+..+..+++.+.+.-++||-+. +-.+.+.+++-++.++++|.. +.|.|-+|.+ +.+. .
T Consensus 68 lDvHLm~~~p~~~i~~~~~~Gad~itvH-------~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~--~ 138 (228)
T PTZ00170 68 LDCHLMVSNPEKWVDDFAKAGASQFTFH-------IEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTD--L 138 (228)
T ss_pred EEEEECCCCHHHHHHHHHHcCCCEEEEe-------ccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccc--h
Confidence 3544433324446666666555666542 222333478888888888763 3455533333 2223 5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+|.-+-.+.+-||+..-.+... ..-|+++++. ....++.+ |. . +.
T Consensus 139 vD~Vl~m~v~pG~~gq~~~~~~--------~~ki~~~~~~--~~~~~I~V-----------dG---G-I~---------- 183 (228)
T PTZ00170 139 VDMVLVMTVEPGFGGQSFMHDM--------MPKVRELRKR--YPHLNIQV-----------DG---G-IN---------- 183 (228)
T ss_pred hhhHHhhhcccCCCCcEecHHH--------HHHHHHHHHh--cccCeEEE-----------CC---C-CC----------
Confidence 6666677777888743333211 2234444442 00112333 00 0 11
Q ss_pred cHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
.+.+....+||||.+++ ++.||.++. + .+.+.+|.+
T Consensus 184 -----~~ti~~~~~aGad~iVv-GsaI~~a~d-~-~~~~~~i~~ 219 (228)
T PTZ00170 184 -----LETIDIAADAGANVIVA-GSSIFKAKD-R-KQAIELLRE 219 (228)
T ss_pred -----HHHHHHHHHcCCCEEEE-chHHhCCCC-H-HHHHHHHHH
Confidence 36778888999999988 678997653 2 334555543
|
|
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.03 E-value=50 Score=31.10 Aligned_cols=149 Identities=21% Similarity=0.281 Sum_probs=90.3
Q ss_pred HHHHHHHhhcccccEEEecCc-cccccC-hhHHHHHHHHHHh--CCceecCCcHHHHHHHhCCchHH--HHHHHHHHcCC
Q 022982 42 VLEDIFESMGQFVDGLKFSGG-SHSLMP-KPFIEEVVKRAHQ--HDVYVSTGDWAEHLIRNGPSAFK--EYVEDCKQVGF 115 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~G-Ts~l~p-~~~l~eKI~l~~~--~gV~v~~GtlfE~a~~qg~~~~~--~yl~~~k~lGF 115 (289)
.....+..+..=+||+|+|.- +...-. -+.++.-++.+++ .+..+..-.|.... .-| .++ +..+.+++.||
T Consensus 69 ~~~aa~~~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~-r~~--~~~p~~l~~~a~~aG~ 145 (235)
T PF04476_consen 69 ASLAALGAAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQ-RVG--SISPLDLPEIAAEAGF 145 (235)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchh-hhc--CCCHHHHHHHHHHcCC
Confidence 345566666667999999952 111100 1123333333443 34555555566533 223 333 45788999999
Q ss_pred CEEEecCC-----c--ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 116 DTIELNVG-----S--LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 116 ~~IEISdG-----t--i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
+.+=|... + --++.++..++++.++++|+. .+. . | + +. .
T Consensus 146 ~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~----~aL----A--G--------S-L~---------------~ 191 (235)
T PF04476_consen 146 DGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLM----CAL----A--G--------S-LR---------------F 191 (235)
T ss_pred CEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccch----hhc----c--c--------c-CC---------------h
Confidence 99988642 2 268999999999999998776 333 1 0 0 11 2
Q ss_pred HHHHHHHHccCcEEEEeccccccC----CCCccHHHHHHHHhcc
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKH----ADSLRADIIAKVIGRL 228 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~----~G~~r~d~v~~ii~~l 228 (289)
+.+..-..-|.|++=+=+- +|.. .|.++.+.|.++-+.+
T Consensus 192 ~di~~L~~l~pD~lGfRGA-vC~ggdR~~G~id~~~V~~lr~~~ 234 (235)
T PF04476_consen 192 EDIPRLKRLGPDILGFRGA-VCGGGDRRAGRIDPELVAALRALM 234 (235)
T ss_pred hHHHHHHhcCCCEEEechh-hCCCCCcCccccCHHHHHHHHHhc
Confidence 3344445688888755332 5554 4789999999887644
|
|
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=80.94 E-value=43 Score=32.76 Aligned_cols=200 Identities=12% Similarity=0.111 Sum_probs=112.1
Q ss_pred chhHHHHHHHhhcc-cccEEEecCccccccC-hhHHHHHHHHHHhC--CceecCCcHHHHHHHh---CCchHHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMP-KPFIEEVVKRAHQH--DVYVSTGDWAEHLIRN---GPSAFKEYVEDCK 111 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GTs~l~p-~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~q---g~~~~~~yl~~~k 111 (289)
.+.++.+..+.+-+ -+.-+=+-.|...-.+ -+.+.+.++..|+. +|.++.=+..|+.+.. | -..++.++.+|
T Consensus 92 s~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G-~~~~e~l~~Lk 170 (371)
T PRK07360 92 TIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDG-LSYEEVLKALK 170 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcC-CCHHHHHHHHH
Confidence 34444444433333 3666667777555444 45677888888874 4545433566664422 3 34688999999
Q ss_pred HcCCCEE-EecCCc----------c-cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 022982 112 QVGFDTI-ELNVGS----------L-EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (289)
Q Consensus 112 ~lGF~~I-EISdGt----------i-~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 179 (289)
+.|.+.+ |-|+-+ - ..+.++|.+.++.+++.|+++-+ |.-.+..|
T Consensus 171 eAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~s--g~i~G~gE--------------------- 227 (371)
T PRK07360 171 DAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTS--TMMYGHVE--------------------- 227 (371)
T ss_pred HcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee--eEEeeCCC---------------------
Confidence 9999998 333221 1 35778999999999999999866 33332211
Q ss_pred ccccHHHHHHHHHHHHHccCcE------EEEe----ccccccCC----CCccHHHHHHHH-hccCCCc--eEEecCC---
Q 022982 180 YVEDVDLLIRRAERCLEAGADM------IMID----SDDVCKHA----DSLRADIIAKVI-GRLGLEK--TMFEATN--- 239 (289)
Q Consensus 180 ~~~~~~~~I~~~~~dLeAGA~~------ViiE----arGI~d~~----G~~r~d~v~~ii-~~l~~ek--lifEAP~--- 239 (289)
+.+++++.+..--+.+.++ |-+- +-=+.+.. +.--.+.+.-|+ .++=+.+ +-.-|+.
T Consensus 228 ---t~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~~~l 304 (371)
T PRK07360 228 ---TPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASWVKL 304 (371)
T ss_pred ---CHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccceee
Confidence 3667777776666666554 3211 11111110 011223343333 3333222 3344442
Q ss_pred chhHHHHHHHhCCCcccc-cCCCCchh
Q 022982 240 PRTSEWFIRRYGPKVNLF-VDHSQVMD 265 (289)
Q Consensus 240 k~qQ~~~I~~fG~~VNLg-I~~~eVl~ 265 (289)
...+..+...+|.|+=-+ |.++.|..
T Consensus 305 g~~~~~~~l~~Gan~~~~~~~~~~v~~ 331 (371)
T PRK07360 305 GLKLAQVALNCGANDLGGTLMEEHITK 331 (371)
T ss_pred CHHHHHHHHhcCCccCcCcCcccceec
Confidence 233445667888887655 66666555
|
|
| >smart00481 POLIIIAc DNA polymerase alpha chain like domain | Back alignment and domain information |
|---|
Probab=80.89 E-value=3.7 Score=29.79 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
....++|++.|++.|+++|=|+|=.---.. .++-+.+++.|++|+|
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~---~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGA---VEFYKAAKKAGIKPII 59 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCH---HHHHHHHHHcCCeEEE
Confidence 347899999999999999999997622222 2445556678988876
|
DNA polymerase alpha chain like domain, incl. family of hypothetical proteins |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=80.88 E-value=15 Score=33.50 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~-i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
...+..+.+.+.|++.+=|-|=+-+ .....-.++|+++++. + .+-+..+ + ...+
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~---~--~ipv~~~-------G-----Gi~s-------- 85 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ---V--FIPLTVG-------G-----GIRS-------- 85 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh---C--CCCEEee-------C-----CCCC--------
Confidence 4555666677899999988887753 3345556788888874 1 1111111 0 0111
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP 238 (289)
.+.+++.+++||+.|++= ++.+. +.+.+.++.+.+|-+++++=.+
T Consensus 86 -------~~~~~~~l~~Ga~~Viig-t~~l~-----~p~~~~ei~~~~g~~~iv~slD 130 (253)
T PRK02083 86 -------VEDARRLLRAGADKVSIN-SAAVA-----NPELISEAADRFGSQCIVVAID 130 (253)
T ss_pred -------HHHHHHHHHcCCCEEEEC-hhHhh-----CcHHHHHHHHHcCCCCEEEEEE
Confidence 566777788999999994 43433 3578999999888888887665
|
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=80.71 E-value=8.1 Score=37.31 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=79.5
Q ss_pred eeEecCCCCCCCchhHHHHHHHhhccccc-EEEecCccccccChhHHHHHHHHHHhCCc-eecCC--cHHHHHHH-hC--
Q 022982 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVD-GLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIR-NG-- 99 (289)
Q Consensus 27 T~V~DkGl~~~~g~~~~~DlLe~ag~yID-~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~-qg-- 99 (289)
|.-++-|-+..-.+..++++++..-.++. ...+ |.-..|...-.++++.++++|| .++-| ++=+..+. -|
T Consensus 54 ~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~ 130 (350)
T PRK08446 54 SVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEI---TTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRI 130 (350)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCceE---EEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 56666665533378899999999887721 1222 2334465566899999999999 88888 67554442 23
Q ss_pred --CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 100 --PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 100 --~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
.+.+.+-++.+++.||+.| -+-=|.-.-+.+++.+-++.+.+.|..
T Consensus 131 ~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 131 HSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPIN 180 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 2345556778888999854 555555566778888889999887654
|
|
| >TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form | Back alignment and domain information |
|---|
Probab=80.62 E-value=38 Score=31.63 Aligned_cols=140 Identities=12% Similarity=0.146 Sum_probs=86.2
Q ss_pred hHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022982 41 NVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 41 ~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
..+-+-++...++ +|++=+.||...-+..+.+.--..+.+++|+.+.+= |-- -.++..++..+..++++|++.|
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r----~~n~~~l~~~L~~~~~~Gi~nv 90 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI----GATREEIREILREYRELGIRHI 90 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec----CCCHHHHHHHHHHHHHCCCCEE
Confidence 3444445666677 999999999887666666655555555789977653 321 1233368889999999999988
Q ss_pred EecCCccc--------CChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 119 ELNVGSLE--------IPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 119 EISdGti~--------i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
=+=.|--. -+.++=.+||+.+++. | ..-+|+=. . +.+.+ . ..+.++.++
T Consensus 91 L~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~---~f~ig~a~--~---Peghp--------~------~~~~~~~~~ 148 (272)
T TIGR00676 91 LALRGDPPKGEGTPTPGGFNYASELVEFIRNEFG---DFDIGVAA--Y---PEKHP--------E------APNLEEDIE 148 (272)
T ss_pred EEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC---CeeEEEEe--C---CCCCC--------C------CCCHHHHHH
Confidence 74333221 1223345677777663 2 01233310 0 11111 1 124667789
Q ss_pred HHHHHHHccCcEEEEec
Q 022982 190 RAERCLEAGADMIMIDS 206 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEa 206 (289)
.+++-++|||+++|.--
T Consensus 149 ~L~~K~~aGA~f~iTQ~ 165 (272)
T TIGR00676 149 NLKRKVDAGADYAITQL 165 (272)
T ss_pred HHHHHHHcCCCeEeecc
Confidence 99999999999998754
|
This protein is an FAD-containing flavoprotein. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=80.40 E-value=22 Score=33.74 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+.++.|-+.||+.|=+..-.. |.++-. ++++.++..|..|--|+|. . |.++|...+ .. ..
T Consensus 88 e~i~~ai~~Gf~sVmid~s~l--~~~eni~~t~~v~~~a~~~gv~Ve~ElG~-~-----gg~ed~~~g-----~~---~~ 151 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSHL--PFEENLALTKKVVEIAHAKGVSVEAELGT-L-----GGIEDGVDE-----KE---AE 151 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEeeCC-C-----cCccccccc-----cc---cc
Confidence 466677788999999877665 444433 5666667788888778876 2 112221111 00 00
Q ss_pred cccHHHHHHHHHHHHH-ccCcEEEEe-c--cccccCCCCccHHHHHHHHhccCCCceEEec-CCchhHHHHHHHhCC-Cc
Q 022982 181 VEDVDLLIRRAERCLE-AGADMIMID-S--DDVCKHADSLRADIIAKVIGRLGLEKTMFEA-TNPRTSEWFIRRYGP-KV 254 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLe-AGA~~ViiE-a--rGI~d~~G~~r~d~v~~ii~~l~~eklifEA-P~k~qQ~~~I~~fG~-~V 254 (289)
..|+++ ++++.+ .|+|++-+= + -|+|.....+..+.+.+|-+.+++--++-=+ -.+..+.--+.+.|. .|
T Consensus 152 ~t~~ee----a~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 152 LADPDE----AEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKI 227 (282)
T ss_pred cCCHHH----HHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 114444 455554 699998864 2 4899888899999999998877633233221 233344443444453 46
Q ss_pred ccc
Q 022982 255 NLF 257 (289)
Q Consensus 255 NLg 257 (289)
|++
T Consensus 228 Nv~ 230 (282)
T TIGR01859 228 NID 230 (282)
T ss_pred EEC
Confidence 665
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=80.33 E-value=28 Score=33.33 Aligned_cols=195 Identities=14% Similarity=0.199 Sum_probs=115.8
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec----CCc--H----------HHHHHHhC----C-
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W----------AEHLIRNG----P- 100 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gt--l----------fE~a~~qg----~- 100 (289)
.+.++|..|-+. +++-|.+-+++-+.++.-|+-|.+.+.++. +|+ + +..+..+- |
T Consensus 5 ~~~~lL~~A~~~----~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV 80 (285)
T PRK07709 5 SMKEMLNKALEG----KYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPV 80 (285)
T ss_pred cHHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcE
Confidence 566666665443 567777788888888888888887776442 231 1 11111111 0
Q ss_pred ------chHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022982 101 ------SAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (289)
Q Consensus 101 ------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 172 (289)
..=-+.+..|-++||+.|=+..-..++.+-- =.++++.++..|.-|--|+|.= |..+|.....
T Consensus 81 ~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~i------gg~ed~~~~~--- 151 (285)
T PRK07709 81 AIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTV------GGQEDDVIAE--- 151 (285)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecc------CCccCCcccc---
Confidence 0112566788899999999976654443322 2367778888899999999982 2122211000
Q ss_pred cCCCCccccccHHHHHHHHHHHHHccCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHH
Q 022982 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIR 248 (289)
Q Consensus 173 ~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~~G~~r~d~v~~ii~~l~~eklifEAP-~k~qQ~~~I~ 248 (289)
.+..+ ||++..+.++ +-|+|.+-+== -|+|...-+++.+.+++|-+.++.--++==+. .|..|.--.-
T Consensus 152 ----~~~yT-~peeA~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai 223 (285)
T PRK07709 152 ----GVIYA-DPAECKHLVE---ATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAI 223 (285)
T ss_pred ----cccCC-CHHHHHHHHH---HhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHH
Confidence 00012 5766666665 35999876632 28999888999999999988776332332222 3444443333
Q ss_pred HhC-CCcccc
Q 022982 249 RYG-PKVNLF 257 (289)
Q Consensus 249 ~fG-~~VNLg 257 (289)
++| ..||.+
T Consensus 224 ~~Gi~KiNi~ 233 (285)
T PRK07709 224 SLGTSKINVN 233 (285)
T ss_pred HcCCeEEEeC
Confidence 444 457765
|
|
| >TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=80.26 E-value=49 Score=31.73 Aligned_cols=169 Identities=11% Similarity=0.145 Sum_probs=100.8
Q ss_pred hHHHHHHHhhc--ccccEEEecCccccccChhHHHHHHHHHHhCC-ce-ecCCc-HHHHHHHhCCc-hHHHHHHHHHHcC
Q 022982 41 NVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VY-VSTGD-WAEHLIRNGPS-AFKEYVEDCKQVG 114 (289)
Q Consensus 41 ~~~~DlLe~ag--~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V~-v~~Gt-lfE~a~~qg~~-~~~~yl~~~k~lG 114 (289)
..++.+++... .-|.-+-|++|--.+.+.+.|.+.++.+++.+ |. +..|| .. ..+|. .-++.++.+++.|
T Consensus 122 ~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~----v~~p~rit~ell~~L~~~g 197 (321)
T TIGR03822 122 AELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVP----VADPARVTPALIAALKTSG 197 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCc----ccChhhcCHHHHHHHHHcC
Confidence 45555555333 23677889999999998888999999999876 21 22243 11 11111 2357777888889
Q ss_pred CCEEEecCCcc---cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHH
Q 022982 115 FDTIELNVGSL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (289)
Q Consensus 115 F~~IEISdGti---~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~ 191 (289)
.. +-||--+. ++. ++-.+.|+++++.|+.+.-..-+-. .+. .+.+.+.+.+
T Consensus 198 ~~-v~i~l~~~h~~el~-~~~~~ai~~L~~~Gi~v~~q~vLl~---gvN---------------------d~~~~l~~l~ 251 (321)
T TIGR03822 198 KT-VYVALHANHARELT-AEARAACARLIDAGIPMVSQSVLLR---GVN---------------------DDPETLAALM 251 (321)
T ss_pred Cc-EEEEecCCChhhcC-HHHHHHHHHHHHcCCEEEEEeeEeC---CCC---------------------CCHHHHHHHH
Confidence 65 45654442 233 5556899999999987666554411 111 1366778888
Q ss_pred HHHHHccCcEEEEec----cc--cccCCCCccHHHHHHHHhccC---CCceEEecCC
Q 022982 192 ERCLEAGADMIMIDS----DD--VCKHADSLRADIIAKVIGRLG---LEKTMFEATN 239 (289)
Q Consensus 192 ~~dLeAGA~~ViiEa----rG--I~d~~G~~r~d~v~~ii~~l~---~eklifEAP~ 239 (289)
+..++.|+...-+.- .| .|+-.-+--.++++++.++++ .-+++-|.|.
T Consensus 252 ~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g~~~p~~v~~~~~ 308 (321)
T TIGR03822 252 RAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISGLAQPTYVLDIPG 308 (321)
T ss_pred HHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCCCcceeEEEeCCC
Confidence 888899987444333 23 232111111344455544444 5577777774
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=80.21 E-value=8.9 Score=36.99 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~ 169 (289)
-+-.+.|++.|||.|||+-|+= .-..+.-.++++.+++. + +| +.+|.- +|..++
T Consensus 80 ~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~---~p-VsvKiR---~g~~~~----- 147 (333)
T PRK11815 80 AEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVS---IP-VTVKHR---IGIDDQ----- 147 (333)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcC---Cc-eEEEEE---eeeCCC-----
Confidence 3334456778999999997752 11223334666666653 2 22 444431 110010
Q ss_pred ccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
.+.+.+++.++...++||+.+++-+|
T Consensus 148 ------------~t~~~~~~~~~~l~~aG~d~i~vh~R 173 (333)
T PRK11815 148 ------------DSYEFLCDFVDTVAEAGCDTFIVHAR 173 (333)
T ss_pred ------------cCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 12556788888888999999999987
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=80.11 E-value=5.1 Score=36.57 Aligned_cols=68 Identities=24% Similarity=0.192 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHcCCCEEEec--CCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELN--VGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
+....|...|+.+|++.|=+- +|+...-. .++|+++++. ...+.-=+|++ +
T Consensus 134 e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~---~e~i~~Vk~~~~~Pv~vGGGIr------------------s----- 187 (205)
T TIGR01769 134 EIAAAYCLAAKYFGMKWVYLEAGSGASYPVN---PETISLVKKASGIPLIVGGGIR------------------S----- 187 (205)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCCCCCC---HHHHHHHHHhhCCCEEEeCCCC------------------C-----
Confidence 457889999999999976554 45532222 4566666663 22222222221 1
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
.++++.-+++|||.|++
T Consensus 188 ----------~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 188 ----------PEIAYEIVLAGADAIVT 204 (205)
T ss_pred ----------HHHHHHHHHcCCCEEEe
Confidence 46777778999999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=80.10 E-value=15 Score=34.60 Aligned_cols=148 Identities=17% Similarity=0.194 Sum_probs=90.2
Q ss_pred hHHHHHHHhhcccccEEEecCccccc-cC----hhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCC
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSL-MP----KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l-~p----~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF 115 (289)
..+-+.|..+| ||.+=+|+..+.- .| .+.+.+.+.. ..++.+ .+|. . .. +=++.+.+.|.
T Consensus 23 ~~i~~~L~~~G--v~~IEvGs~~~~~~~p~~~d~~~~~~~l~~--~~~~~~--~~~~-----~---~~-~dv~~A~~~g~ 87 (274)
T cd07938 23 IELIDALSAAG--LRRIEVTSFVSPKWVPQMADAEEVLAGLPR--RPGVRY--SALV-----P---NL-RGAERALAAGV 87 (274)
T ss_pred HHHHHHHHHcC--CCEEEeCCCCCcccccccCCHHHHHhhccc--CCCCEE--EEEC-----C---CH-HHHHHHHHcCc
Confidence 34556677777 9999999654433 22 2222222221 112222 2232 1 22 23788888999
Q ss_pred CEEEecCCccc--------CC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 116 DTIELNVGSLE--------IP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 116 ~~IEISdGti~--------i~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
+.|-+...+-+ .+ .+.-.+.|+.+++.|++|.--+..-+.. + .+. ..+
T Consensus 88 ~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~-~----~~~---------------~~~ 147 (274)
T cd07938 88 DEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGC-P----YEG---------------EVP 147 (274)
T ss_pred CEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecC-C----CCC---------------CCC
Confidence 99888755433 12 2445567999999999865444332211 1 100 115
Q ss_pred HHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
++.+++.++...++||+.|- |.|..|...+..+.++++.+
T Consensus 148 ~~~~~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (274)
T cd07938 148 PERVAEVAERLLDLGCDEIS-----LGDTIGVATPAQVRRLLEAV 187 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEE-----ECCCCCccCHHHHHHHHHHH
Confidence 88899999999999998764 67888888888888777644
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 289 | ||||
| 1qwg_A | 251 | Crystal Structure Of Methanococcus Jannaschii Phosp | 2e-08 | ||
| 1u83_A | 276 | Psl Synthase From Bacillus Subtilis Length = 276 | 2e-04 |
| >pdb|1QWG|A Chain A, Crystal Structure Of Methanococcus Jannaschii Phosphosulfolactate Synthase Length = 251 | Back alignment and structure |
|
| >pdb|1U83|A Chain A, Psl Synthase From Bacillus Subtilis Length = 276 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 Length = 251 | Back alignment and structure |
|---|
Score = 233 bits (595), Expect = 1e-76
Identities = 53/273 (19%), Positives = 107/273 (39%), Gaps = 39/273 (14%)
Query: 16 DRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75
+ + + G+T + +ED + G ++D +KF G+ +++ + ++E
Sbjct: 5 EFLYEDFQRGLTVVLDKGLPPKF----VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEK 60
Query: 76 VKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+ + V G E+ G F E++ +C+++GF+ +E++ GS +I E
Sbjct: 61 INYYKDWGIKVYPGGTLFEYAYSKG--KFDEFLNECEKLGFEAVEISDGSSDISLEERNN 118
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194
++ K G + D D I+
Sbjct: 119 AIKRAKDNGFMVLTEVGKKMPDKDKQLTIDD---------------------RIKLINFD 157
Query: 195 LEAGADMIMIDSDD------VCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIR 248
L+AGAD ++I+ + + ++ + + + + + K +FEA FI
Sbjct: 158 LDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFIL 217
Query: 249 RYGPKVNLF-VDHSQVMDLECLR----GRNLGK 276
++G VNL + +V+ LE LR G GK
Sbjct: 218 KFGSSVNLANIAFDEVISLETLRRGLRGDTFGK 250
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 Length = 276 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 3e-66
Identities = 53/263 (20%), Positives = 97/263 (36%), Gaps = 38/263 (14%)
Query: 16 DRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75
R KPR G + + Y L +D ++D +KF G+ L +EE
Sbjct: 32 VRTNKPRETGQSILIDNGYPL----QFFKDAIAGASDYIDFVKFGWGTSLLTKD--LEEK 85
Query: 76 VKRAHQHDVYVSTGDW-AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+ +HD+ G E + E+ C G + IE++ G+L + +
Sbjct: 86 ISTLKEHDITFFFGGTLFEKYVSQK--KVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAA 143
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194
Y+ L G+ A + +
Sbjct: 144 YIADFSDEFLVLS------------------EVGSKDAELASRQ----SSEEWLEYIVED 181
Query: 195 LEAGADMIMIDSDD-----VCKHADSLRADIIAKVIGR-LGLEKTMFEATNPRTSEWFIR 248
+EAGA+ ++ ++ + +C + +R I+ +I + + + +FEA N + FI+
Sbjct: 182 MEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTLQQGFIQ 241
Query: 249 RYGPKVNLF-VDHSQVMDLECLR 270
+ GP VNL + + LE LR
Sbjct: 242 KIGPNVNLANIPFHDAIALETLR 264
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A Length = 290 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 181 VEDVDLLIRRAERCLEAGADMIMIDS 206
+RR + EAGAD I+I S
Sbjct: 162 GLGQQEAVRRGQAYEEAGADAILIHS 187
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A Length = 295 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 181 VEDVDLLIRRAERCLEAGADMIMIDS 206
+D ++RAE AGAD I++ S
Sbjct: 166 GWGLDEALKRAEAYRNAGADAILMHS 191
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 289 | |||
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 100.0 | |
| 1u83_A | 276 | Phosphosulfolactate synthase; structural genomics, | 100.0 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 96.2 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 96.19 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 96.07 | |
| 3qc0_A | 275 | Sugar isomerase; TIM barrel, structural genomics, | 95.89 | |
| 3cqj_A | 295 | L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre | 95.69 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 95.63 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 95.58 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 95.56 | |
| 2q02_A | 272 | Putative cytoplasmic protein; structural genomics, | 95.51 | |
| 1yx1_A | 264 | Hypothetical protein PA2260; structural genomics, | 95.31 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 95.3 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 95.3 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 95.1 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 95.07 | |
| 3kws_A | 287 | Putative sugar isomerase; structural genomics, joi | 94.93 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 94.8 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 94.56 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 94.54 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 94.46 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 94.37 | |
| 2x7v_A | 287 | Probable endonuclease 4; DNA repair protein, metal | 94.37 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 94.08 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 94.07 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 93.93 | |
| 3aal_A | 303 | Probable endonuclease 4; endoiv, DNA repair, base | 93.88 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 93.81 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 93.68 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 93.67 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 93.66 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 93.47 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 93.28 | |
| 2g0w_A | 296 | LMO2234 protein; putative sugar isomerase, structu | 93.25 | |
| 2hk0_A | 309 | D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00 | 93.24 | |
| 2zvr_A | 290 | Uncharacterized protein TM_0416; hyperthermophIle, | 93.24 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 93.16 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 93.09 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 93.01 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 93.01 | |
| 1qtw_A | 285 | Endonuclease IV; DNA repair enzyme, TIM barrel, tr | 92.98 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 92.88 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 92.84 | |
| 3aam_A | 270 | Endonuclease IV, endoiv; DNA repair, base excision | 92.83 | |
| 3obe_A | 305 | Sugar phosphate isomerase/epimerase; structural ge | 92.68 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 92.57 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 92.53 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 92.4 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 92.37 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 92.33 | |
| 3vni_A | 294 | Xylose isomerase domain protein TIM barrel; D-psic | 92.32 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 92.15 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 92.11 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 92.1 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 92.09 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 91.9 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 91.78 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 91.72 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 91.7 | |
| 1i60_A | 278 | IOLI protein; beta barrel, structural genomics, PS | 91.64 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 91.61 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 91.39 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 91.37 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 91.28 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 91.2 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 91.17 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 91.14 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 91.0 | |
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 90.91 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 90.84 | |
| 2qul_A | 290 | D-tagatose 3-epimerase; beta/alpha barrel, isomera | 90.74 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 90.53 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 90.51 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 90.46 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 90.35 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 90.34 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 90.32 | |
| 3cny_A | 301 | Inositol catabolism protein IOLE; xylose isomerase | 90.28 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 90.16 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 90.06 | |
| 2qw5_A | 335 | Xylose isomerase-like TIM barrel; putative sugar p | 89.97 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 89.85 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 89.72 | |
| 3dx5_A | 286 | Uncharacterized protein ASBF; beta-alpha barrel, p | 89.61 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 89.61 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 89.47 | |
| 3ngf_A | 269 | AP endonuclease, family 2; structural genomics, se | 89.42 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 89.4 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 89.37 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 89.25 | |
| 3tva_A | 290 | Xylose isomerase domain protein TIM barrel; struct | 89.24 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 89.19 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 89.16 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 89.05 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 89.02 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 88.95 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 88.94 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 88.87 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 88.87 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 88.84 | |
| 3u0h_A | 281 | Xylose isomerase domain protein; structural genomi | 88.63 | |
| 3ktc_A | 333 | Xylose isomerase; putative sugar isomerase, struct | 88.57 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 88.47 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 88.44 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 88.41 | |
| 3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet | 88.37 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 88.34 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 88.25 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 88.19 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 88.19 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 88.17 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 88.12 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 88.08 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 88.07 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 88.02 | |
| 3l23_A | 303 | Sugar phosphate isomerase/epimerase; structural ge | 88.02 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 87.96 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 87.83 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 87.81 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 87.74 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 87.68 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 87.61 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 87.54 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 87.5 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 87.46 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 87.37 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 87.04 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 87.04 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 86.92 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 86.82 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 86.69 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 86.45 | |
| 3kws_A | 287 | Putative sugar isomerase; structural genomics, joi | 86.4 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 86.39 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 86.31 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 86.26 | |
| 2zds_A | 340 | Putative DNA-binding protein; TIM-barrel fold, str | 86.0 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 85.84 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 85.67 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 85.6 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 85.6 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 85.33 | |
| 3ipw_A | 325 | Hydrolase TATD family protein; niaid, ssgcid, seat | 85.33 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 85.27 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 85.04 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 84.99 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 84.98 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 84.96 | |
| 2a5h_A | 416 | L-lysine 2,3-aminomutase; radical SAM, four-iron-f | 84.92 | |
| 1hjs_A | 332 | Beta-1,4-galactanase; 4-galactanases, family 53 gl | 84.78 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 84.77 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 84.74 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 84.49 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 84.42 | |
| 1k77_A | 260 | EC1530, hypothetical protein YGBM; TIM barrel, str | 84.31 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 84.01 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 83.49 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 83.47 | |
| 3rcm_A | 287 | TATD family hydrolase; HET: CIT; 2.05A {Pseudomona | 83.4 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 83.26 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 83.23 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 83.05 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 82.94 | |
| 3tva_A | 290 | Xylose isomerase domain protein TIM barrel; struct | 82.79 | |
| 1fob_A | 334 | Beta-1,4-galactanase; B/A barrel, glycosyl hydrola | 82.78 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 82.45 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 82.33 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 82.21 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 82.21 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 82.12 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 82.11 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 81.54 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 81.42 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 81.21 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 81.16 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 81.03 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 80.87 | |
| 3m6y_A | 275 | 4-hydroxy-2-oxoglutarate aldolase; structural geno | 80.87 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 80.86 | |
| 2vtf_A | 626 | Endo-beta-N-acetylglucosaminidase; hydrolase, fami | 80.83 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 80.82 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 80.68 | |
| 1zzm_A | 259 | Putative deoxyribonuclease YJJV; hydrolaze, zinc, | 80.65 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 80.29 | |
| 1xwy_A | 264 | DNAse TATD, deoxyribonuclease TATD; TIM barrael, z | 80.16 |
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-93 Score=652.68 Aligned_cols=234 Identities=22% Similarity=0.396 Sum_probs=223.9
Q ss_pred CCCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHH
Q 022982 19 EKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIR 97 (289)
Q Consensus 19 ~KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~ 97 (289)
+|||++|+|||+|||+ |+++++|+|++||+|||++|||||||+|||++.|++||++||+|||+|||| ||||+|++
T Consensus 8 ~KPR~~GlT~v~dkgl----g~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGTl~E~~~~ 83 (251)
T 1qwg_A 8 YEDFQRGLTVVLDKGL----PPKFVEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYS 83 (251)
T ss_dssp CCCCCCCCEEEEESSC----CHHHHHHHHHHHGGGCSEEEECTTGGGGSCHHHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred CCCcccCeeEEecCCC----CHHHHHHHHHHhhhhcceEEecCceeeecCHHHHHHHHHHHHHcCCeEECCcHHHHHHHH
Confidence 9999999999999998 888999999999999999999999999999999999999999999999997 59999999
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
|| ++++|+++||++||++|||||||++||+++|+++|++++++||+|+||+|+|++. .+.
T Consensus 84 qg--~~~~yl~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~------~~~------------ 143 (251)
T 1qwg_A 84 KG--KFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPD------KDK------------ 143 (251)
T ss_dssp TT--CHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHH------HHT------------
T ss_pred cC--cHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHCCCEEeeeccccCCc------ccC------------
Confidence 99 9999999999999999999999999999999999999999999999999999852 111
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc------ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhC
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYG 251 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar------GI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~qQ~~~I~~fG 251 (289)
..|++++|+++++||+|||++|||||| ||||++|+||+|++++|++++|++|||||||+|+||+|||++||
T Consensus 144 ---~~~~~~~I~~~~~~LeAGA~~ViiEarEsG~~iGi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k~qq~~fI~~fG 220 (251)
T 1qwg_A 144 ---QLTIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFILKFG 220 (251)
T ss_dssp ---TCCHHHHHHHHHHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEEECCSHHHHHHHHHHHC
T ss_pred ---CCCHHHHHHHHHHHHHCCCcEEEEeeecccCCcccCCCCCCCcHHHHHHHHHhCChhhEEEECCChHHHHHHHHHhC
Confidence 226999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred CCcccc-cCCCCchhhhhhhcccCCCccc
Q 022982 252 PKVNLF-VDHSQVMDLECLRGRNLGKSHR 279 (289)
Q Consensus 252 ~~VNLg-I~~~eVl~LE~LR~g~~G~~~~ 279 (289)
|||||| |+|+||++|||||+|+||.++.
T Consensus 221 ~~VNLgNI~~~eVi~LE~LR~GLrgDT~~ 249 (251)
T 1qwg_A 221 SSVNLANIAFDEVISLETLRRGLRGDTFG 249 (251)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHTCSGGGTT
T ss_pred CCccccCCCHHHHHHHHHHHccccccccc
Confidence 999998 9999999999999999987653
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-92 Score=651.49 Aligned_cols=241 Identities=21% Similarity=0.370 Sum_probs=211.8
Q ss_pred ccccC-CCCCCCCCCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCcee
Q 022982 8 WKSFD-EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV 86 (289)
Q Consensus 8 ~~~f~-~~~~R~~KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v 86 (289)
++.|. ++|.|++|||.+|+|||+|||+ |+++++|+|++||+|||++||||||++|||+ |++||++||+|||+|
T Consensus 23 m~~~~f~~~~R~~KPR~~GlT~v~Dkgl----g~~~~~DlLe~ag~yID~lKfg~GTs~l~~~--l~ekI~l~~~~gV~v 96 (276)
T 1u83_A 23 MNDFSLELPVRTNKPRETGQSILIDNGY----PLQFFKDAIAGASDYIDFVKFGWGTSLLTKD--LEEKISTLKEHDITF 96 (276)
T ss_dssp --CCCCCCCCCCCSSCSSSCEEEEESSC----CHHHHHHHHHHHGGGCCEEEECTTGGGGCTT--HHHHHHHHHHTTCEE
T ss_pred cccccCCCCCcCCCCcccCceEEecCCC----CHHHHHHHHHHhhhhcceEEecCcchhhhHH--HHHHHHHHHHcCCeE
Confidence 34555 4699999999999999999999 8889999999999999999999999999997 999999999999999
Q ss_pred cCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccc
Q 022982 87 STG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR 165 (289)
Q Consensus 87 ~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~ 165 (289)
||| ||||+|+.|| ++++|+++||++||++|||||||++||+++|+++|+++++. |+|+||+|+|++. .+.
T Consensus 97 ~~GGTlfE~~l~qg--~~~~yl~~~k~lGF~~IEISdGti~l~~~~~~~lI~~a~~~-f~Vl~EvG~K~~~------~~~ 167 (276)
T 1u83_A 97 FFGGTLFEKYVSQK--KVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSDE-FLVLSEVGSKDAE------LAS 167 (276)
T ss_dssp EECHHHHHHHHHTT--CHHHHHHHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTTT-SEEEEECSCCC-----------
T ss_pred eCCcHHHHHHHHcC--cHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHhh-cEEeeeccccCcc------ccC
Confidence 997 5999999999 99999999999999999999999999999999999999999 9999999999862 111
Q ss_pred ccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc-----ccccCCCCccHHHH-HHHHhccCCCceEEecCC
Q 022982 166 AFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADII-AKVIGRLGLEKTMFEATN 239 (289)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-----GI~d~~G~~r~d~v-~~ii~~l~~eklifEAP~ 239 (289)
..+++++|+++++||+|||++|||||| ||||++|+||+|++ ++|++++|++|||||||+
T Consensus 168 ---------------~~~~~~~I~~~~~dLeAGA~~ViiEaRESG~~Gi~~~~g~~r~d~v~~~i~~~l~~eklifEAp~ 232 (276)
T 1u83_A 168 ---------------RQSSEEWLEYIVEDMEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPN 232 (276)
T ss_dssp ----------------CCSTHHHHHHHHHHHHTEEEEEEC------------------CCHHHHHTTTSCGGGEEEECCS
T ss_pred ---------------CCCHHHHHHHHHHHHHCCCcEEEEeeeccCCCCccCCCCCCcHHHHHHHHHhhCChhhEEEECCC
Confidence 125888899999999999999999996 89999999999999 999999999999999999
Q ss_pred chhHHHHHHHhCCCcccc-cCCCCchhhhhhhcccCCCcc
Q 022982 240 PRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSH 278 (289)
Q Consensus 240 k~qQ~~~I~~fG~~VNLg-I~~~eVl~LE~LR~g~~G~~~ 278 (289)
|+||+|||++|||||||| |+|+||++|||||+|+||.++
T Consensus 233 k~qq~~fI~~fGp~VNLgNI~~~eVi~LE~LR~GLrgDT~ 272 (276)
T 1u83_A 233 KTLQQGFIQKIGPNVNLANIPFHDAIALETLRLGLRSDTF 272 (276)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEGGGHHHHHHHHTTCSGGGC
T ss_pred HHHHHHHHHHhCCCccccCCCHHHHHHHHHHHcccccccc
Confidence 999999999999999998 999999999999999998764
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.059 Score=49.01 Aligned_cols=161 Identities=11% Similarity=0.055 Sum_probs=103.6
Q ss_pred chhHHHHHHHhhcccccEEEecCccc--------cccChh---HHHHHHHHHHhCCceec--CCc-H-HHHHHHhCCchH
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSH--------SLMPKP---FIEEVVKRAHQHDVYVS--TGD-W-AEHLIRNGPSAF 103 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs--------~l~p~~---~l~eKI~l~~~~gV~v~--~Gt-l-fE~a~~qg~~~~ 103 (289)
....++..++. -+|.+-+...+| -...++ .+++-++.+|++|+.|. -++ + .|.....+|+.+
T Consensus 81 n~~~i~~a~~~---G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~ 157 (295)
T 1ydn_A 81 NMKGYEAAAAA---HADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAV 157 (295)
T ss_dssp SHHHHHHHHHT---TCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHH
T ss_pred CHHHHHHHHHC---CCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHH
Confidence 34445555554 456666665555 222233 34666999999999875 121 1 133334455567
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
.++++.+.+.|.+.|=|.|-.--+.+++-.++|+.+++. +.- ..+++... . |
T Consensus 158 ~~~~~~~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~-~~~-~~l~~H~H-n------~------------------- 209 (295)
T 1ydn_A 158 ASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAI-APA-HSLAGHYH-D------T------------------- 209 (295)
T ss_dssp HHHHHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTT-SCG-GGEEEEEB-C------T-------------------
T ss_pred HHHHHHHHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHh-CCC-CeEEEEEC-C------C-------------------
Confidence 777777779999999999866678888889999999885 210 12444321 1 1
Q ss_pred HHHHHHHHHHHHHccCcEEEEecccccc------CCCCccHHHHHHHHhccCC
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEarGI~d------~~G~~r~d~v~~ii~~l~~ 230 (289)
...-+..+...++|||++|=+=--|+-. ..||+.++.+-..+...|.
T Consensus 210 ~Gla~an~l~Ai~aG~~~vd~sv~GlG~cp~a~g~~GN~~~e~lv~~l~~~g~ 262 (295)
T 1ydn_A 210 GGRALDNIRVSLEKGLRVFDASVGGLGGCPFAPGAKGNVDTVAVVEMLHEMGF 262 (295)
T ss_dssp TSCHHHHHHHHHHHTCCEEEEBTTCCSCBTTBTTSCCBCBHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHhCCCEEEeccccCCCCCCCCCCcCChhHHHHHHHHHhcCC
Confidence 1112566788899999977654457776 7899998877766665553
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.052 Score=47.14 Aligned_cols=127 Identities=6% Similarity=0.116 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc--cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL--EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti--~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 179 (289)
.+++.++.++++||+.||+....+ .++.++..++.+.+++.|+++.. ++.-..
T Consensus 31 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~------------------------ 85 (257)
T 3lmz_A 31 DLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYA-VGPIYM------------------------ 85 (257)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEE-EEEEEE------------------------
T ss_pred CHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEE-Eecccc------------------------
Confidence 689999999999999999998743 56778888999999999998653 332110
Q ss_pred ccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC--------CchhHHHHHHHhC
Q 022982 180 YVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT--------NPRTSEWFIRRYG 251 (289)
Q Consensus 180 ~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP--------~k~qQ~~~I~~fG 251 (289)
.+.+.+.+.++..-+.||.+|.+... .. .-..+.++++..|+ ++.+|.- +..+-..+++..+
T Consensus 86 --~~~~~~~~~i~~A~~lGa~~v~~~p~-----~~--~l~~l~~~a~~~gv-~l~lEn~~~~~~~~~~~~~~~~ll~~~~ 155 (257)
T 3lmz_A 86 --KSEEEIDRAFDYAKRVGVKLIVGVPN-----YE--LLPYVDKKVKEYDF-HYAIHLHGPDIKTYPDATDVWVHTKDLD 155 (257)
T ss_dssp --CSHHHHHHHHHHHHHHTCSEEEEEEC-----GG--GHHHHHHHHHHHTC-EEEEECCCTTCSSSCSHHHHHHHHTTSC
T ss_pred --CCHHHHHHHHHHHHHhCCCEEEecCC-----HH--HHHHHHHHHHHcCC-EEEEecCCCcccccCCHHHHHHHHHhCC
Confidence 12556666677777899999998642 11 22345566666665 3666654 2334455666555
Q ss_pred CCcccccCCCCc
Q 022982 252 PKVNLFVDHSQV 263 (289)
Q Consensus 252 ~~VNLgI~~~eV 263 (289)
|+|-+..|..+.
T Consensus 156 p~vg~~~D~~h~ 167 (257)
T 3lmz_A 156 PRIGMCLDVGHD 167 (257)
T ss_dssp TTEEEEEEHHHH
T ss_pred CCccEEEchhhH
Confidence 654443554433
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.056 Score=46.01 Aligned_cols=144 Identities=15% Similarity=0.043 Sum_probs=86.5
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (289)
.+...-++++..++++|++|.|+=.+.-... +-|+..+++ +++++-..-+ .. -.+.+++.|.+.|.|
T Consensus 11 ~~~~~~~~~~~~~~~~diie~G~p~~~~~g~----~~i~~ir~~~~~~~i~~~~~~-----~~--~~~~~~~~~~~~Gad 79 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDIIEVGTPFLIREGV----NAIKAIKEKYPHKEVLADAKI-----MD--GGHFESQLLFDAGAD 79 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEEEECHHHHHHHTT----HHHHHHHHHCTTSEEEEEEEE-----CS--CHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHhhcCccEEEeCcHHHHhccH----HHHHHHHHhCCCCEEEEEEEe-----cc--chHHHHHHHHhcCCC
Confidence 4556677777777899999999711111122 234444443 6666433211 12 234458999999999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHH
Q 022982 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195 (289)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dL 195 (289)
.|=+.+-. +.+...++++.+++.|+++..++ +. | ++ .++++..+
T Consensus 80 ~v~v~~~~---~~~~~~~~~~~~~~~g~~~~v~~~~~-----------------------~------t~---~~~~~~~~ 124 (211)
T 3f4w_A 80 YVTVLGVT---DVLTIQSCIRAAKEAGKQVVVDMICV-----------------------D------DL---PARVRLLE 124 (211)
T ss_dssp EEEEETTS---CHHHHHHHHHHHHHHTCEEEEECTTC-----------------------S------SH---HHHHHHHH
T ss_pred EEEEeCCC---ChhHHHHHHHHHHHcCCeEEEEecCC-----------------------C------CH---HHHHHHHH
Confidence 99996543 34566789999999888765431 11 1 12 56677788
Q ss_pred HccCcEEEEeccccccC-CCCccHHHHHHHHhccC
Q 022982 196 EAGADMIMIDSDDVCKH-ADSLRADIIAKVIGRLG 229 (289)
Q Consensus 196 eAGA~~ViiEarGI~d~-~G~~r~d~v~~ii~~l~ 229 (289)
++|+++|.+. .|.... .+....+.+.++.+.++
T Consensus 125 ~~g~d~i~v~-~g~~g~~~~~~~~~~i~~l~~~~~ 158 (211)
T 3f4w_A 125 EAGADMLAVH-TGTDQQAAGRKPIDDLITMLKVRR 158 (211)
T ss_dssp HHTCCEEEEE-CCHHHHHTTCCSHHHHHHHHHHCS
T ss_pred HcCCCEEEEc-CCCcccccCCCCHHHHHHHHHHcC
Confidence 9999999886 322111 11113466666665443
|
| >3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.043 Score=47.34 Aligned_cols=140 Identities=21% Similarity=0.204 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.+++.++.++++||+.||+... .+...+..++.+.+++.|+++..--.-.+.. ..|++. + .
T Consensus 19 ~~~~~l~~~~~~G~~~vEl~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~-----~~d~~~--------r----~ 79 (275)
T 3qc0_A 19 GFAEAVDICLKHGITAIAPWRD--QVAAIGLGEAGRIVRANGLKLTGLCRGGFFP-----APDASG--------R----E 79 (275)
T ss_dssp CHHHHHHHHHHTTCCEEECBHH--HHHHHCHHHHHHHHHHHTCEESCEEEEECCC-----CSSHHH--------H----H
T ss_pred CHHHHHHHHHHcCCCEEEeccc--cccccCHHHHHHHHHHcCCceEEeecCCCcC-----CCCHHH--------H----H
Confidence 6889999999999999999764 2345667788889999999876532111111 111100 0 0
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCC----c--cHHHHHHH---HhccCCCceEEecC------------Cc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS----L--RADIIAKV---IGRLGLEKTMFEAT------------NP 240 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~----~--r~d~v~~i---i~~l~~eklifEAP------------~k 240 (289)
...+.+.+.++..-+.||..|++-+-........ + -.+.+.++ ++..|+ +|.+|.- +.
T Consensus 80 ~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lE~~~~~~~~~~~~~~~~ 158 (275)
T 3qc0_A 80 KAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGV-PLAIEPLHPMYAADRACVNTL 158 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTC-CEEECCCCGGGTTTTBSCCCH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEeECCCcccCCccccCCH
Confidence 1134445555555578999999876322211101 0 01223333 344555 5888851 34
Q ss_pred hhHHHHHHHhCCCcccc--cCCCCc
Q 022982 241 RTSEWFIRRYGPKVNLF--VDHSQV 263 (289)
Q Consensus 241 ~qQ~~~I~~fG~~VNLg--I~~~eV 263 (289)
.+-..+++..++ |+| .|..+.
T Consensus 159 ~~~~~l~~~~~~--~vg~~~D~~h~ 181 (275)
T 3qc0_A 159 GQALDICETLGP--GVGVAIDVYHV 181 (275)
T ss_dssp HHHHHHHHHHCT--TEEEEEEHHHH
T ss_pred HHHHHHHHHhCc--ccEEEEEhhhh
Confidence 567789999998 665 554443
|
| >3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.1 Score=45.95 Aligned_cols=144 Identities=15% Similarity=0.274 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-------cCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCcccccccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~evg~~~d~~~~~~~~~ 173 (289)
.+++.++.++++||+.||++.... .++.++..++.+.+++.|+++.. +..-.. .-..+ ..|++.
T Consensus 31 ~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~-~~d~~~------ 102 (295)
T 3cqj_A 31 CWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPS-MCLSAHRRFPLG-SEDDAV------ 102 (295)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEE-EEEGGGGTSCTT-CSSHHH------
T ss_pred CHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEE-EecCcccCCCCC-CCCHHH------
Confidence 799999999999999999986542 45677788899999999999753 221000 00011 011100
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHH-------HH---HHHhccCCCceEEecC-----
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADI-------IA---KVIGRLGLEKTMFEAT----- 238 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~-------v~---~ii~~l~~eklifEAP----- 238 (289)
. ....+.+.+.++..-+.||..|++-+-..+.. .-+.+. +. ++++..|+ +|.+|.-
T Consensus 103 --r----~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lEn~~~~~~ 173 (295)
T 3cqj_A 103 --R----AQGLEIMRKAIQFAQDVGIRVIQLAGYDVYYQ--EANNETRRRFRDGLKESVEMASRAQV-TLAMEIMDYPLM 173 (295)
T ss_dssp --H----HHHHHHHHHHHHHHHHHTCCEEEECCCSCSSS--CCCHHHHHHHHHHHHHHHHHHHHHTC-EEEEECCSSGGG
T ss_pred --H----HHHHHHHHHHHHHHHHcCCCEEEECCCCCCcC--cCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEeeCCCccc
Confidence 0 01245555666666678999999865322111 112221 22 22333444 5788853
Q ss_pred -CchhHHHHHHHhCC-CcccccCCCC
Q 022982 239 -NPRTSEWFIRRYGP-KVNLFVDHSQ 262 (289)
Q Consensus 239 -~k~qQ~~~I~~fG~-~VNLgI~~~e 262 (289)
...+-..+++..|+ +|-+.+|...
T Consensus 174 ~~~~~~~~l~~~v~~~~vg~~~D~~h 199 (295)
T 3cqj_A 174 NSISKALGYAHYLNNPWFQLYPDIGN 199 (295)
T ss_dssp CSHHHHHHHHHHHCCTTEEEECBHHH
T ss_pred CCHHHHHHHHHhcCCCCeEEEeccch
Confidence 44667789999985 4444355443
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.17 Score=43.78 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 169 (289)
.+++.++.++++||++||+.... ..++.++..++-+.+++.|+++.. ++.-.. .
T Consensus 23 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~-------~------ 88 (262)
T 3p6l_A 23 PLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVG-TGVYVA-------E------ 88 (262)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEE-EEEECC-------S------
T ss_pred CHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEE-EeccCC-------c------
Confidence 68999999999999999998652 356788888999999999998643 222110 0
Q ss_pred ccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEec
Q 022982 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEA 237 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEA 237 (289)
+.+.+-+.++..-+.||..|.+... .-.-..+.++++..|+ ++.+|.
T Consensus 89 -------------~~~~~~~~i~~A~~lGa~~v~~~~~-------~~~~~~l~~~a~~~gv-~l~~En 135 (262)
T 3p6l_A 89 -------------KSSDWEKMFKFAKAMDLEFITCEPA-------LSDWDLVEKLSKQYNI-KISVHN 135 (262)
T ss_dssp -------------STTHHHHHHHHHHHTTCSEEEECCC-------GGGHHHHHHHHHHHTC-EEEEEC
T ss_pred -------------cHHHHHHHHHHHHHcCCCEEEecCC-------HHHHHHHHHHHHHhCC-EEEEEe
Confidence 1233344555555789999999752 1112345555555554 355554
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.18 Score=48.61 Aligned_cols=123 Identities=17% Similarity=0.297 Sum_probs=87.5
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc------
Q 022982 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL------ 125 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti------ 125 (289)
++.+-||+||..+.+.+.|++.++.++++ ++. .+ .|+.+.-+|+.+ ++.++.+++.|++.|+++--+.
T Consensus 105 i~~i~fgGGtpt~l~~~~l~~ll~~i~~~~~~~--~~--~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~ 180 (457)
T 1olt_A 105 VSQLHWGGGTPTYLNKAQISRLMKLLRENFQFN--AD--AEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQR 180 (457)
T ss_dssp EEEEEEEESCGGGSCHHHHHHHHHHHHHHSCEE--EE--EEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHH
T ss_pred eEEEEEeCCCcccCCHHHHHHHHHHHHHhCCCC--CC--cEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHH
Confidence 78899999999999999999999999873 110 00 011111233333 5788999999999999974443
Q ss_pred ----cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 ----EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
.-+.++-.+.|+.+++.||. +...+=. +. |. +|.+++.+.++..++.|.+
T Consensus 181 ~i~R~~~~~~~~~ai~~~r~~G~~~v~~dlI~--Gl----------------Pg-------et~e~~~~tl~~~~~l~~~ 235 (457)
T 1olt_A 181 LVNREQDEEFIFALLNHAREIGFTSTNIDLIY--GL----------------PK-------QTPESFAFTLKRVAELNPD 235 (457)
T ss_dssp HHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEE--SC----------------TT-------CCHHHHHHHHHHHHHHCCS
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEc--CC----------------CC-------CCHHHHHHHHHHHHhcCcC
Confidence 24577888999999999997 5554422 11 11 1478889999999999999
Q ss_pred EEEEe
Q 022982 201 MIMID 205 (289)
Q Consensus 201 ~ViiE 205 (289)
.|-+=
T Consensus 236 ~i~~y 240 (457)
T 1olt_A 236 RLSVF 240 (457)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 88764
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.16 Score=46.46 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=103.5
Q ss_pred hhHHHHHHHhhcccccEEEecCccccccChh-----------HHHHHHHHHHhCCceec------CCcHHHHHHHhCCch
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSA 102 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~ 102 (289)
...++..++. =+|.+-+..++|-++.+. .+++-++.+|++|+.|. .|.-++- .-+|+.
T Consensus 86 ~~~i~~a~~a---G~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~--~~~~~~ 160 (302)
T 2ftp_A 86 LKGFEAALES---GVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDG--DVDPRQ 160 (302)
T ss_dssp HHHHHHHHHT---TCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTB--CCCHHH
T ss_pred HHHHHHHHhC---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCC--CCCHHH
Confidence 3345555553 467777767776653322 34888999999999883 2321121 233445
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.++++.+.+.|.|.|=|.|-.--+.+.+-.++|+.+++. +. .-.++... ..+
T Consensus 161 ~~~~~~~~~~~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~-~~-~~~l~~H~-Hn~------------------------ 213 (302)
T 2ftp_A 161 VAWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASE-VP-RERLAGHF-HDT------------------------ 213 (302)
T ss_dssp HHHHHHHHHHTTCSEEEEEESSSCCCHHHHHHHHHHHTTT-SC-GGGEEEEE-BCT------------------------
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCcCHHHHHHHHHHHHHh-CC-CCeEEEEe-CCC------------------------
Confidence 6666666669999999999877678888888999999874 21 11344432 111
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecccccc------CCCCccHHHHHHHHhccCC
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d------~~G~~r~d~v~~ii~~l~~ 230 (289)
...-+..+...++|||++|=+=-.|+=+ ..||..++.+-..+...|.
T Consensus 214 -~Gla~An~laAv~aGa~~vd~tv~GlG~cp~a~gr~GN~~~E~lv~~l~~~g~ 266 (302)
T 2ftp_A 214 -YGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNGLEI 266 (302)
T ss_dssp -TSCHHHHHHHHHHTTCCEEEEBGGGCCBCGGGTTCBCBCBHHHHHHHHHHTTC
T ss_pred -ccHHHHHHHHHHHhCCCEEEecccccCCCCCCCCCCCChhHHHHHHHHHhcCC
Confidence 1122678888999999976443348877 7899998888777765543
|
| >2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.31 Score=41.86 Aligned_cols=139 Identities=12% Similarity=0.143 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc--c-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL--E-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti--~-i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 178 (289)
.+++.++.++++||+.||+..... . .+..+..++-+.+++.|+++.+ ++.-.+... . |.+
T Consensus 20 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~-~~~~~~~~~---~-~~~------------ 82 (272)
T 2q02_A 20 SIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVT-INAVYPFNQ---L-TEE------------ 82 (272)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEE-EEEETTTTS---C-CHH------------
T ss_pred CHHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEe-chhhhccCC---c-HHH------------
Confidence 688999999999999999985432 2 2446677788888999998654 222111110 0 110
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCcc---HHHHHH---HHhccCCCceEEecC--------CchhHH
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLR---ADIIAK---VIGRLGLEKTMFEAT--------NPRTSE 244 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r---~d~v~~---ii~~l~~eklifEAP--------~k~qQ~ 244 (289)
..+.+.+.++..-+.||..|.+-+- .... ..++ .+.+.+ +++..|+ +|.+|.- ...+-.
T Consensus 83 ----~~~~~~~~i~~a~~lG~~~v~~~~g-~~~~-~~~~~~~~~~l~~l~~~a~~~gv-~l~~E~~~~~~~~~~~~~~~~ 155 (272)
T 2q02_A 83 ----VVKKTEGLLRDAQGVGARALVLCPL-NDGT-IVPPEVTVEAIKRLSDLFARYDI-QGLVEPLGFRVSSLRSAVWAQ 155 (272)
T ss_dssp ----HHHHHHHHHHHHHHHTCSEEEECCC-CSSB-CCCHHHHHHHHHHHHHHHHTTTC-EEEECCCCSTTCSCCCHHHHH
T ss_pred ----HHHHHHHHHHHHHHhCCCEEEEccC-CCch-hHHHHHHHHHHHHHHHHHHHcCC-EEEEEecCCCcccccCHHHHH
Confidence 1344455555566789999988432 1111 1121 223333 3444554 5777763 345566
Q ss_pred HHHHHhCCCcccccCCCCch
Q 022982 245 WFIRRYGPKVNLFVDHSQVM 264 (289)
Q Consensus 245 ~~I~~fG~~VNLgI~~~eVl 264 (289)
.+++..+|+|.+.+|..+..
T Consensus 156 ~l~~~v~~~~g~~~D~~h~~ 175 (272)
T 2q02_A 156 QLIREAGSPFKVLLDTFHHH 175 (272)
T ss_dssp HHHHHHTCCCEEEEEHHHHH
T ss_pred HHHHHhCcCeEEEEEchHhh
Confidence 89999996555546555443
|
| >1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.13 Score=44.69 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.+++.++.++++||+.||+......-+. +..++-+.+++.|+++..-..... .+. +..
T Consensus 24 ~~~~~l~~a~~~G~~~vEl~~~~~~~~~-~~~~~~~~l~~~gl~i~~~~~~~~-~~~-----~~~--------------- 81 (264)
T 1yx1_A 24 GQASFLPLLAMAGAQRVELREELFAGPP-DTEALTAAIQLQGLECVFSSPLEL-WRE-----DGQ--------------- 81 (264)
T ss_dssp CGGGGHHHHHHHTCSEEEEEGGGCSSCC-CHHHHHHHHHHTTCEEEEEEEEEE-ECT-----TSS---------------
T ss_pred CHHHHHHHHHHcCCCEEEEEHHhcCCCH-HHHHHHHHHHHcCCEEEEecchhh-cCC-----chh---------------
Confidence 5788999999999999999754332123 666788889999998753211110 000 000
Q ss_pred ccH-HHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCC------chhHHHHHHHh---C
Q 022982 182 EDV-DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN------PRTSEWFIRRY---G 251 (289)
Q Consensus 182 ~~~-~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~------k~qQ~~~I~~f---G 251 (289)
. +.+.+.++..-+.||..|.+-.-. +.... .-..+.++++..|+ +|.+|.-. ..+-..+++.. |
T Consensus 82 --~~~~~~~~i~~A~~lGa~~v~~~~g~-~~~~~--~l~~l~~~a~~~Gv-~l~lEn~~~~~~~~~~~~~~ll~~v~~~~ 155 (264)
T 1yx1_A 82 --LNPELEPTLRRAEACGAGWLKVSLGL-LPEQP--DLAALGRRLARHGL-QLLVENDQTPQGGRIEVLERFFRLAERQQ 155 (264)
T ss_dssp --BCTTHHHHHHHHHHTTCSEEEEEEEC-CCSSC--CHHHHHHHHTTSSC-EEEEECCSSHHHHCHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHcCCCEEEEecCC-CCcHH--HHHHHHHHHHhcCC-EEEEecCCCCCCCCHHHHHHHHHHHHhcC
Confidence 1 223344444557899999987632 22222 44556667777776 68888653 24566788888 8
Q ss_pred CCcccccCC
Q 022982 252 PKVNLFVDH 260 (289)
Q Consensus 252 ~~VNLgI~~ 260 (289)
++|-+-.|.
T Consensus 156 ~~vg~~~D~ 164 (264)
T 1yx1_A 156 LDLAMTFDI 164 (264)
T ss_dssp CSEEEEEET
T ss_pred CCeEEEEeh
Confidence 765554555
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.026 Score=53.32 Aligned_cols=139 Identities=18% Similarity=0.174 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhC-------CceecCCcHHHHH-HHhCCchHHHHHHHHHHcCCCEEEecCCccc----C--ChhHHHHHH
Q 022982 71 FIEEVVKRAHQH-------DVYVSTGDWAEHL-IRNGPSAFKEYVEDCKQVGFDTIELNVGSLE----I--PEETLLRYV 136 (289)
Q Consensus 71 ~l~eKI~l~~~~-------gV~v~~GtlfE~a-~~qg~~~~~~yl~~~k~lGF~~IEISdGti~----i--~~~~r~~lI 136 (289)
.+.|.|+-.++. +|++++..|.+-- +... ...++.+.+.+.|+|+|+||+|+.. + ++.....++
T Consensus 210 ~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~--~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~ 287 (363)
T 3l5l_A 210 FLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLE--ESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIA 287 (363)
T ss_dssp HHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHH--HHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHH
T ss_pred HHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHH--HHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHH
Confidence 566777777754 2355554333211 2222 5566778888999999999998642 1 233345666
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc-CcEEEEeccccccCCCC
Q 022982 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHADS 215 (289)
Q Consensus 137 ~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG-A~~ViiEarGI~d~~G~ 215 (289)
+.+++. +. +|=++. | .+. | .+.+++.|++| ||.|++ +|.+..
T Consensus 288 ~~ir~~-~~-iPVi~~-------G--------gI~-----------s----~e~a~~~l~~G~aD~V~i-GR~~la---- 330 (363)
T 3l5l_A 288 ERVRRE-AK-LPVTSA-------W--------GFG-----------T----PQLAEAALQANQLDLVSV-GRAHLA---- 330 (363)
T ss_dssp HHHHHH-HT-CCEEEC-------S--------STT-----------S----HHHHHHHHHTTSCSEEEC-CHHHHH----
T ss_pred HHHHHH-cC-CcEEEe-------C--------CCC-----------C----HHHHHHHHHCCCccEEEe-cHHHHh----
Confidence 766663 00 121111 1 111 1 46777889999 999988 565543
Q ss_pred ccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhC
Q 022982 216 LRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYG 251 (289)
Q Consensus 216 ~r~d~v~~ii~~l~~eklifEAP~k~qQ~~~I~~fG 251 (289)
..+++.++.+.++.+.. +...+.|..|++.+|+
T Consensus 331 -nPdl~~k~~~~lg~~~~--~~~~~~~~~~~~~~~~ 363 (363)
T 3l5l_A 331 -DPHWAYFAAKELGVEKA--SWTLPAPYAHWLERYR 363 (363)
T ss_dssp -CTTHHHHHHHHTTCTTG--GGGSCHHHHHHHC---
T ss_pred -CchHHHHHHHHcCCCcc--cCCCCchhHhHhhccC
Confidence 26789999998885321 2355678888877663
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.12 Score=47.14 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=107.0
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceec------CCcHHHHHHHhCCc
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPS 101 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~ 101 (289)
....++..++. -+|.+-+...+|-.+.+ +.+++-|+.+|++|+.|. .|- |.+-..+++
T Consensus 82 ~~~~i~~a~~a---g~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~--~~~~~~~~~ 156 (298)
T 2cw6_A 82 NLKGFEAAVAA---GAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGC--PYEGKISPA 156 (298)
T ss_dssp SHHHHHHHHHT---TCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCB--TTTBSCCHH
T ss_pred CHHhHHHHHHC---CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeC--CcCCCCCHH
Confidence 34455666654 46777776666655322 356778999999999884 221 211123445
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.+.++.+.+.++|.+.|=+.|-.--+.+++-.++|+.+++. +. .-.+++.+ .. |
T Consensus 157 ~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~-~~-~~~i~~H~-Hn------~----------------- 210 (298)
T 2cw6_A 157 KVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQE-VP-LAALAVHC-HD------T----------------- 210 (298)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHH-SC-GGGEEEEE-BC------T-----------------
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHh-CC-CCeEEEEE-CC------C-----------------
Confidence 67788888899999999999988899999999999999985 21 11344432 11 1
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEecccccc------CCCCccHHHHHHHHhccCC
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d------~~G~~r~d~v~~ii~~l~~ 230 (289)
...-+..+...++|||+.|=.=--|+=+ ..||..++.+-..+...|.
T Consensus 211 --~Gla~An~laA~~aGa~~vd~tv~GlG~cp~a~g~aGN~~~E~lv~~l~~~g~ 263 (298)
T 2cw6_A 211 --YGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGI 263 (298)
T ss_dssp --TSCHHHHHHHHHHTTCCEEEEBTTSCCCCTTSCSSCCBCBHHHHHHHHHHHTC
T ss_pred --CchHHHHHHHHHHhCCCEEEeecccccCCCCCCCCcCChhHHHHHHHHHhcCC
Confidence 1112556777899999976543347766 7999999988877765443
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.14 Score=47.94 Aligned_cols=156 Identities=16% Similarity=0.149 Sum_probs=107.4
Q ss_pred hHHHHHHHhhcccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHH
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYV 107 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl 107 (289)
+.++..++.- +|.+-+-..+|-.+.+ +.+++-++.++++|+.|... .|+. .-...++.+-+..
T Consensus 100 ~~i~~a~~~g---~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~-~~~~~~~~~~~~~ 175 (337)
T 3ble_A 100 KTVDWIKDSG---AKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSN-GFRNSPDYVKSLV 175 (337)
T ss_dssp HHHHHHHHHT---CCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH-HHHHCHHHHHHHH
T ss_pred hhHHHHHHCC---CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC-CCcCCHHHHHHHH
Confidence 3555556544 4556665555543311 46788899999999987754 3322 3344556778888
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHH
Q 022982 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (289)
+.+.++|.+.|=+.|-.--+.+.+-.++|+.+++. +. .-.+++.+. . | ...-
T Consensus 176 ~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~p-~~~i~~H~H-n------d-------------------~GlA 227 (337)
T 3ble_A 176 EHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQK-YP-DIHFEFHGH-N------D-------------------YDLS 227 (337)
T ss_dssp HHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHH-CT-TSCEEEECB-C------T-------------------TSCH
T ss_pred HHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHHh-cC-CCeEEEEec-C------C-------------------cchH
Confidence 88999999999999988889999999999999985 21 123455331 1 1 2223
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+-.+-..++|||+.|=.=--|+=...||..++.+-..+...
T Consensus 228 ~AN~laAv~aGa~~vd~tv~GlG~~aGN~~~E~lv~~L~~~ 268 (337)
T 3ble_A 228 VANSLQAIRAGVKGLHASINGLGERAGNTPLEALVTTIHDK 268 (337)
T ss_dssp HHHHHHHHHTTCSEEEEBGGGCSSTTCBCBHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEecccccccccchhHHHHHHHHHHh
Confidence 67778899999996643345888899999988777666543
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.33 Score=48.69 Aligned_cols=93 Identities=20% Similarity=0.273 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
.+.+++.+.+.|.+.|-|.+.+-++ +.-...|+.+++.|..|-.-+.-.+ +. .-
T Consensus 119 ~~~~ve~a~~aGvd~vrIf~s~sd~--~ni~~~i~~ak~~G~~v~~~i~~~~---------~~---------------~~ 172 (539)
T 1rqb_A 119 VDRFVDKSAENGMDVFRVFDAMNDP--RNMAHAMAAVKKAGKHAQGTICYTI---------SP---------------VH 172 (539)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTCCT--HHHHHHHHHHHHTTCEEEEEEECCC---------ST---------------TC
T ss_pred cHHHHHHHHhCCCCEEEEEEehhHH--HHHHHHHHHHHHCCCeEEEEEEeee---------CC---------------CC
Confidence 7889999999999999999888777 5556899999999987533332211 11 01
Q ss_pred cHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
|++.+++.+++-.++||+.| .|+|..|-.....+.++++
T Consensus 173 ~~e~~~~~a~~l~~~Gad~I-----~L~DT~G~~~P~~v~~lv~ 211 (539)
T 1rqb_A 173 TVEGYVKLAGQLLDMGADSI-----ALKDMAALLKPQPAYDIIK 211 (539)
T ss_dssp CHHHHHHHHHHHHHTTCSEE-----EEEETTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEE-----EeCCCCCCcCHHHHHHHHH
Confidence 58899999999999999855 4788889888888888876
|
| >3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.2 Score=43.91 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.+++.++.++++||+.||+..... .++..++.+.+++.|+++.+ +..-... ... ..|++. + .
T Consensus 39 ~~~~~l~~~~~~G~~~vEl~~~~~---~~~~~~~~~~l~~~gl~v~~-~~~~~~~-~l~-~~d~~~--------r----~ 100 (287)
T 3kws_A 39 SLNEKLDFMEKLGVVGFEPGGGGL---AGRVNEIKQALNGRNIKVSA-ICAGFKG-FIL-STDPAI--------R----K 100 (287)
T ss_dssp SHHHHHHHHHHTTCCEEECBSTTC---GGGHHHHHHHHTTSSCEECE-EECCCCS-CTT-BSSHHH--------H----H
T ss_pred CHHHHHHHHHHcCCCEEEecCCch---HHHHHHHHHHHHHcCCeEEE-EecCCCC-cCC-CCCHHH--------H----H
Confidence 688999999999999999998743 45667788888889998754 2221100 000 111100 0 0
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEecc-ccccCCCCccH-------HHHH---HHHhccCCCceEEe--cC-------Cch
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRA-------DIIA---KVIGRLGLEKTMFE--AT-------NPR 241 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEar-GI~d~~G~~r~-------d~v~---~ii~~l~~eklifE--AP-------~k~ 241 (289)
...+.+.+.++..-+.||..|++-+- +-++..-..+. +.+. ++++..|+ +|.+| .+ ...
T Consensus 101 ~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~~~~~~~~~~~~~ 179 (287)
T 3kws_A 101 ECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGT-SVIFEPLNRKECFYLRQVA 179 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTC-CEEECCCCTTTCSSCCCHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEEecCcccCcccCCHH
Confidence 12344555555566789999988542 22221000111 1222 23344555 68888 32 355
Q ss_pred hHHHHHHHhC-CCcccccCCCCch
Q 022982 242 TSEWFIRRYG-PKVNLFVDHSQVM 264 (289)
Q Consensus 242 qQ~~~I~~fG-~~VNLgI~~~eVl 264 (289)
+-..+++..| |+|.+.+|..+..
T Consensus 180 ~~~~ll~~v~~~~vg~~~D~~h~~ 203 (287)
T 3kws_A 180 DAASLCRDINNPGVRCMGDFWHMT 203 (287)
T ss_dssp HHHHHHHHHCCTTEEEEEEHHHHH
T ss_pred HHHHHHHHcCCCCeeEEeehHHHH
Confidence 6778999999 6666655554443
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.43 Score=43.40 Aligned_cols=101 Identities=18% Similarity=0.299 Sum_probs=74.1
Q ss_pred chhHHHHHHHhhcc-cccEEEecCccccccChhHHHHHHHHHHhCCc----eecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV----YVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV----~v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
....+..+++.+.+ -+..+.|.+|--.+.+ .+.+.++.+++.+. .+.| |+++ +++++.+++
T Consensus 51 s~e~i~~~i~~~~~~g~~~i~~tGGEPll~~--~l~~li~~~~~~~~~~~i~i~TNG~ll-----------~~~~~~L~~ 117 (340)
T 1tv8_A 51 TFDEMARIAKVYAELGVKKIRITGGEPLMRR--DLDVLIAKLNQIDGIEDIGLTTNGLLL-----------KKHGQKLYD 117 (340)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEESSCGGGST--THHHHHHHHTTCTTCCEEEEEECSTTH-----------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccchh--hHHHHHHHHHhCCCCCeEEEEeCccch-----------HHHHHHHHH
Confidence 55677777765543 3788999999988887 47899999998853 3444 6543 345677788
Q ss_pred cCCCEEEecCCccc-----------CChhHHHHHHHHHHHcCCcccceeee
Q 022982 113 VGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 113 lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
.|++.|.||=-+.+ .+.+.-.+.|+.+++.|+.|...+-+
T Consensus 118 ~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~~v~i~~vv 168 (340)
T 1tv8_A 118 AGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVI 168 (340)
T ss_dssp HTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
Confidence 99999999977652 15677888999999999865554444
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.28 Score=48.18 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
-++.+++.+.+.|.+.|-|.+.+-++ +.-...|+.+++.|.+|..-+.--+ +. .
T Consensus 101 v~~~~v~~a~~~Gvd~i~if~~~sd~--~ni~~~i~~ak~~G~~v~~~i~~~~---------~~---------------~ 154 (464)
T 2nx9_A 101 VVDTFVERAVKNGMDVFRVFDAMNDV--RNMQQALQAVKKMGAHAQGTLCYTT---------SP---------------V 154 (464)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTCCT--HHHHHHHHHHHHTTCEEEEEEECCC---------CT---------------T
T ss_pred hhHHHHHHHHhCCcCEEEEEEecCHH--HHHHHHHHHHHHCCCEEEEEEEeee---------CC---------------C
Confidence 36889999999999999999887776 4556899999999988643332211 01 0
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~ 227 (289)
-|++.+++.+++-.++||+.| .|+|..|-..+..+.++++.
T Consensus 155 ~~~e~~~~~a~~l~~~Gad~I-----~l~DT~G~~~P~~v~~lv~~ 195 (464)
T 2nx9_A 155 HNLQTWVDVAQQLAELGVDSI-----ALKDMAGILTPYAAEELVST 195 (464)
T ss_dssp CCHHHHHHHHHHHHHTTCSEE-----EEEETTSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEE-----EEcCCCCCcCHHHHHHHHHH
Confidence 158889999999999999866 47888888888888877753
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.34 Score=43.48 Aligned_cols=74 Identities=9% Similarity=0.061 Sum_probs=52.9
Q ss_pred hhHHHHHHHhhc--ccccEEEecCccc--------cccChhHHHHHHHHHHhC-Cceec----CCcHHHHHHHhCCchHH
Q 022982 40 HNVLEDIFESMG--QFVDGLKFSGGSH--------SLMPKPFIEEVVKRAHQH-DVYVS----TGDWAEHLIRNGPSAFK 104 (289)
Q Consensus 40 ~~~~~DlLe~ag--~yID~lKfg~GTs--------~l~p~~~l~eKI~l~~~~-gV~v~----~GtlfE~a~~qg~~~~~ 104 (289)
+..+.+..+.+- ...|++-+.+++- ...+.+.+.+.++.+++. ++++. ++ + ..+.
T Consensus 110 ~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~~-~---------~~~~ 179 (311)
T 1ep3_A 110 EADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPN-V---------TDIV 179 (311)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSC-S---------SCSH
T ss_pred HHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC-h---------HHHH
Confidence 455666666555 5789998877643 334667788999988887 77544 33 2 2567
Q ss_pred HHHHHHHHcCCCEEEecCC
Q 022982 105 EYVEDCKQVGFDTIELNVG 123 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdG 123 (289)
++.+.+.+.|.|+|-++++
T Consensus 180 ~~a~~l~~~G~d~i~v~~~ 198 (311)
T 1ep3_A 180 PIAKAVEAAGADGLTMINT 198 (311)
T ss_dssp HHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHcCCCEEEEeCC
Confidence 7888999999999999874
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.44 Score=43.76 Aligned_cols=80 Identities=9% Similarity=0.103 Sum_probs=50.2
Q ss_pred hhHHHHHHHhhcccccEEEecCcccc------ccChhHHHHHHHHHHhC----------Cceec---CCcHHHHHHHhCC
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH----------DVYVS---TGDWAEHLIRNGP 100 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~----------gV~v~---~GtlfE~a~~qg~ 100 (289)
...+.+..+.+.++.|++=+-++|-. +...+.+.+.++-.++. ++++. ..+|- .
T Consensus 152 ~~~~~~aa~~~~~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~-----~-- 224 (336)
T 1f76_A 152 KDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLS-----E-- 224 (336)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCC-----H--
T ss_pred HHHHHHHHHHHhccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCC-----H--
Confidence 34555555555678898877776543 33445556666665543 45442 12221 1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLE 126 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~ 126 (289)
+.+.++.+.+.+.|.|+|.+|+++..
T Consensus 225 ~~~~~~a~~l~~~Gvd~i~vsn~~~~ 250 (336)
T 1f76_A 225 EELIQVADSLVRHNIDGVIATNTTLD 250 (336)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCBCC
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCccc
Confidence 14677788999999999999998753
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.49 Score=44.24 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.++++++.+.+.|.+.|.+.-|.- . .++++.+++.|+++. ++-.
T Consensus 110 ~~~~~~~~~~~~g~~~V~~~~g~~---~---~~~i~~~~~~g~~v~----~~v~-------------------------- 153 (369)
T 3bw2_A 110 GYDAKLAVLLDDPVPVVSFHFGVP---D---REVIARLRRAGTLTL----VTAT-------------------------- 153 (369)
T ss_dssp THHHHHHHHHHSCCSEEEEESSCC---C---HHHHHHHHHTTCEEE----EEES--------------------------
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCC---c---HHHHHHHHHCCCeEE----EECC--------------------------
Confidence 589999999999999999987753 1 357777787776543 3110
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+ ++.++...++|||+|++++.
T Consensus 154 -t----~~~a~~a~~~GaD~i~v~g~ 174 (369)
T 3bw2_A 154 -T----PEEARAVEAAGADAVIAQGV 174 (369)
T ss_dssp -S----HHHHHHHHHTTCSEEEEECT
T ss_pred -C----HHHHHHHHHcCCCEEEEeCC
Confidence 1 34566778999999999885
|
| >2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.28 Score=42.58 Aligned_cols=143 Identities=13% Similarity=0.130 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCccccccccccccC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRDRAFGAYVARA 174 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~-evg~~~d~~~~~~~~~~ 174 (289)
.+++.++.++++||+.||+..+. ..++.++..++.+.+++.|+++.+ +....+.. ... ..|++
T Consensus 13 ~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~h~~~~~~~~-~~~~~-------- 82 (287)
T 2x7v_A 13 GFDRVPQDTVNIGGNSFQIFPHNARSWSAKLPSDEAATKFKREMKKHGIDWEN-AFCHSGYLINLA-SPKDD-------- 82 (287)
T ss_dssp CGGGHHHHHHHTTCSEEEECSCCCSSSCCCCCCHHHHHHHHHHHHHHTCCGGG-EEEECCTTCCTT-CSSHH--------
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCcccccccCCCHHHHHHHHHHHHHcCCCcce-eEEecccccccC-CCCHH--------
Confidence 57788999999999999997532 145667888899999999999622 22211110 001 01110
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccH-------HHHHHHHhccCCCceEEecC---------
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA-------DIIAKVIGRLGLEKTMFEAT--------- 238 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~-------d~v~~ii~~l~~eklifEAP--------- 238 (289)
.+ ....+.+.+.++..-+.||..|.+-.-...+ .-+. +.+.++++...-=+|.+|.-
T Consensus 83 ~r----~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~ 155 (287)
T 2x7v_A 83 IW----QKSVELLKKEVEICRKLGIRYLNIHPGSHLG---TGEEEGIDRIVRGLNEVLNNTEGVVILLENVSQKGGNIGY 155 (287)
T ss_dssp HH----HHHHHHHHHHHHHHHHHTCCEEEECCEECTT---SCHHHHHHHHHHHHHHHHTTCCSCEEEEECCCCCTTEECS
T ss_pred HH----HHHHHHHHHHHHHHHHcCCCEEEEecCCCCC---CCHHHHHHHHHHHHHHHHcccCCCEEEEeCCCCCCCccCC
Confidence 00 0124455556666667899999885422211 1112 23344443311226778863
Q ss_pred CchhHHHHHHHhC--CCcccccCCC
Q 022982 239 NPRTSEWFIRRYG--PKVNLFVDHS 261 (289)
Q Consensus 239 ~k~qQ~~~I~~fG--~~VNLgI~~~ 261 (289)
+..+-..+++..+ |+|-+.+|..
T Consensus 156 ~~~~~~~l~~~~~~~~~vg~~~D~~ 180 (287)
T 2x7v_A 156 KLEQLKKIRDLVDQRDRVAITYDTC 180 (287)
T ss_dssp SHHHHHHHHHHCSCGGGEEEEEEHH
T ss_pred CHHHHHHHHHhcCCCCCeEEEEEhh
Confidence 3455678999998 4555434443
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.39 Score=43.80 Aligned_cols=116 Identities=20% Similarity=0.284 Sum_probs=81.3
Q ss_pred hHHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 102 AFKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 102 ~~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
-+++| +++|+..|-|+|=+-+. .++.++..++++.+++.|+.+..|+.-
T Consensus 122 iid~~qv~~A~~~GAD~VlLi~a--~l~~~~l~~l~~~a~~lGl~~lvev~t---------------------------- 171 (272)
T 3qja_A 122 VVQPYQIHEARAHGADMLLLIVA--ALEQSVLVSMLDRTESLGMTALVEVHT---------------------------- 171 (272)
T ss_dssp CCSHHHHHHHHHTTCSEEEEEGG--GSCHHHHHHHHHHHHHTTCEEEEEESS----------------------------
T ss_pred ccCHHHHHHHHHcCCCEEEEecc--cCCHHHHHHHHHHHHHCCCcEEEEcCC----------------------------
Confidence 57788 99999999999988544 456778888999999999987655421
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCC-ceEEecCCc-hhHHHHHHHhCCCccc
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATNP-RTSEWFIRRYGPKVNL 256 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e-klifEAP~k-~qQ~~~I~~fG~~VNL 256 (289)
+ +++++.+++||++|-+-.|.+-.- .+.-+.+.++...++.+ -++-|.=-. ..+..-+...|.+-=+
T Consensus 172 ---~----ee~~~A~~~Gad~IGv~~r~l~~~--~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~Gadgvl 240 (272)
T 3qja_A 172 ---E----QEADRALKAGAKVIGVNARDLMTL--DVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVL 240 (272)
T ss_dssp ---H----HHHHHHHHHTCSEEEEESBCTTTC--CBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred ---H----HHHHHHHHCCCCEEEECCCccccc--ccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 2 344556688999999987743111 23345677787777633 456666544 6677778888876444
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.27 Score=45.14 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=105.1
Q ss_pred HHHHHHHhh-cccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHH
Q 022982 42 VLEDIFESM-GQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (289)
Q Consensus 42 ~~~DlLe~a-g~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~ 109 (289)
.++..++.. +.=+|.+-+-..+|-+..+ +.+++-++.++++|..|..+- |.+-..+++.+-++.+.
T Consensus 81 di~~a~~~~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~--~d~~~~~~~~~~~~~~~ 158 (293)
T 3ewb_X 81 DIDRAEEALKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSP--EDATRSDRAFLIEAVQT 158 (293)
T ss_dssp HHHHHHHHHTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEE--ETGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEe--ccCCCCCHHHHHHHHHH
Confidence 344455531 1126666666666654422 236788899999999877532 22334455677888899
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCCccccccHHHH
Q 022982 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (289)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (289)
+.++|.+.|-+.|-.--+.+.+-.++|+.+++. +.- .-.+++.+. . |...-
T Consensus 159 ~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~~~~l~~H~H-n-------------------------d~Gla 211 (293)
T 3ewb_X 159 AIDAGATVINIPDTVGYTNPTEFGQLFQDLRRE-IKQFDDIIFASHCH-D-------------------------DLGMA 211 (293)
T ss_dssp HHHTTCCEEEEECSSSCCCHHHHHHHHHHHHHH-CTTGGGSEEEEECB-C-------------------------TTSCH
T ss_pred HHHcCCCEEEecCCCCCCCHHHHHHHHHHHHHh-cCCccCceEEEEeC-C-------------------------CcChH
Confidence 999999999999999999999999999999884 110 012455331 1 12223
Q ss_pred HHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 022982 188 IRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~ 226 (289)
+-.+...++|||+. +++- |+=...||.-++.+-..+.
T Consensus 212 ~AN~laA~~aGa~~--vd~sv~GlGeraGN~~~E~vv~~L~ 250 (293)
T 3ewb_X 212 TANALAAIENGARR--VEGTINGIGERAGNTALEEVAVALH 250 (293)
T ss_dssp HHHHHHHHHTTCCE--EEEBGGGCCTTTCBCBHHHHHHHHH
T ss_pred HHHHHHHHHhCCCE--EEeeccccccccccHhHHHHHHHHH
Confidence 67788899999994 5775 8888999999887766554
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.95 Score=41.00 Aligned_cols=131 Identities=19% Similarity=0.156 Sum_probs=89.8
Q ss_pred chhHHHHHHHhhcc-cccEEEecCccccccChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (289)
.+..+.+.++.+-+ -+..+-|.+|...+++.+.+.+.++.+++.++.+.. .+. .-++.++.+++.|++
T Consensus 85 s~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~~~~~~li~~i~~~~~~i~~s~g~----------l~~e~l~~L~~ag~~ 154 (348)
T 3iix_A 85 TPEEIVERARLAVQFGAKTIVLQSGEDPYXMPDVISDIVKEIKKMGVAVTLSLGE----------WPREYYEKWKEAGAD 154 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEESCCGGGTTHHHHHHHHHHHTTSCEEEEECCC----------CCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHhcCceEEEecCC----------CCHHHHHHHHHhCCC
Confidence 34455555544333 377888999996677767899999999999887763 221 236778888999999
Q ss_pred EEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 117 TIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 117 ~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
.+-+|--+. .-+.+++.+.|+.+++.|+.+.+ +.-.+.. . ++.++
T Consensus 155 ~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~--~~i~G~p----~-------------------et~e~ 209 (348)
T 3iix_A 155 RYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGA--GSMVGLP----G-------------------QTIDD 209 (348)
T ss_dssp EEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEE--CBEESCT----T-------------------CCHHH
T ss_pred EEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeecc--ceEEeCC----C-------------------CCHHH
Confidence 998875554 23788999999999999986433 3222210 0 13666
Q ss_pred HHHHHHHHHHccCcEEEE
Q 022982 187 LIRRAERCLEAGADMIMI 204 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~Vii 204 (289)
+.+.+....+.|++.|-+
T Consensus 210 ~~~~~~~l~~l~~~~i~i 227 (348)
T 3iix_A 210 LVDDLLFLKEHDFDMVGI 227 (348)
T ss_dssp HHHHHHHHHHHTCSEECC
T ss_pred HHHHHHHHHhcCCCEEee
Confidence 677777666778887654
|
| >3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A | Back alignment and structure |
|---|
Probab=93.88 E-value=0.2 Score=44.54 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCccc-ccccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRD-RAFGAYVAR 173 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~-evg~~~d-~~~~~~~~~ 173 (289)
.+++.++.++++||++||+.... ..++.++..++-+.+++.|+++.+ +-.+.. ... ..| ++
T Consensus 19 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~h~~~~~nl~-s~d~~~------- 87 (303)
T 3aal_A 19 MLLAASEEAASYGANTFMIYTGAPQNTKRKSIEELNIEAGRQHMQAHGIEEIV---VHAPYIINIG-NTTNLD------- 87 (303)
T ss_dssp THHHHHHHHHHTTCSEEEEESSCTTCCCCCCSGGGCHHHHHHHHHHTTCCEEE---EECCTTCCTT-CSSCHH-------
T ss_pred cHHHHHHHHHHcCCCEEEEcCCCCCccCCCCCCHHHHHHHHHHHHHcCCceEE---EeccccccCC-CCCcHH-------
Confidence 58899999999999999994322 134467777888889999995322 211100 000 011 10
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHh---ccC----CCceEEecC--------
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG---RLG----LEKTMFEAT-------- 238 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~---~l~----~eklifEAP-------- 238 (289)
.+ ....+.+.+.++.+-+.||..|++-.-... +.-+.+..+.+++ .+. -=+|.+|.-
T Consensus 88 -~r----~~~~~~~~~~i~~A~~lGa~~vv~h~g~~~---~~~~~~~~~~~~~~l~~l~~~a~gv~l~lEn~~~~~~~~~ 159 (303)
T 3aal_A 88 -TF----SLGVDFLRAEIERTEAIGAKQLVLHPGAHV---GAGVEAGLRQIIRGLNEVLTREQNVQIALETMAGKGSECG 159 (303)
T ss_dssp -HH----HHHHHHHHHHHHHHHHHTCSEEEECCEECT---TSCHHHHHHHHHHHHHHHCCSSCSCEEEEECCCCCTTEEC
T ss_pred -HH----HHHHHHHHHHHHHHHHcCCCEEEECCCcCC---CCCHHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCccC
Confidence 00 112555666667777889999988653221 1122222322222 221 137888875
Q ss_pred -CchhHHHHHHHhC--CCcccccCCCCc
Q 022982 239 -NPRTSEWFIRRYG--PKVNLFVDHSQV 263 (289)
Q Consensus 239 -~k~qQ~~~I~~fG--~~VNLgI~~~eV 263 (289)
.+.+-..+|+..+ |+|-+.+|..++
T Consensus 160 ~t~~~~~~li~~v~~~~~vg~~lD~~H~ 187 (303)
T 3aal_A 160 RTFEELAYIIDGVAYNDKLSVCFDTCHT 187 (303)
T ss_dssp SSHHHHHHHHHHCTTGGGEEEEEEHHHH
T ss_pred CCHHHHHHHHHhcCCCCCEEEEEEccCH
Confidence 4556677999998 455554555443
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.98 Score=42.28 Aligned_cols=202 Identities=15% Similarity=0.146 Sum_probs=120.7
Q ss_pred hhHHHHHHHhhcccc--cEEEecCccccccChhHHHHHHHHHHhCCceecC----CcHHHHHHHhCCchHHHHHHHHHHc
Q 022982 40 HNVLEDIFESMGQFV--DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDWAEHLIRNGPSAFKEYVEDCKQV 113 (289)
Q Consensus 40 ~~~~~DlLe~ag~yI--D~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~----GtlfE~a~~qg~~~~~~yl~~~k~l 113 (289)
...++.+++.|-+.= =++-++-|+...++.+.+...+..+.+++|+|.. |..+ +.+..|-+.
T Consensus 27 ~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~~~VPValHlDHg~~~------------e~~~~ai~~ 94 (305)
T 1rvg_A 27 MEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKEARVPVAVHLDHGSSY------------ESVLRALRA 94 (305)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEEECSH------------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHhCCCcEEEECCCCCCH------------HHHHHHHHc
Confidence 344444554432211 1344444443333444445554444446666664 3334 344566789
Q ss_pred CCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 114 GFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 114 GF~~IEISdGti~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
||+.|=|.--. +|.++= .++++.+...|.-|--|+|.=-+ .+|.. ... .-.+ ...||++..+
T Consensus 95 GFtSVMiDgS~--~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg------~Ed~~---~~~--~~~~-~yT~Peea~~ 160 (305)
T 1rvg_A 95 GFTSVMIDKSH--EDFETNVRETRRVVEAAHAVGVTVEAELGRLAG------IEEHV---AVD--EKDA-LLTNPEEARI 160 (305)
T ss_dssp TCSEEEECCTT--SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCC------SCC-----------CCT-TCCCHHHHHH
T ss_pred CCCeeeeCCCC--CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccC------ccCCc---ccc--cccc-ccCCHHHHHH
Confidence 99999886554 455443 36778888899999999998321 12110 000 0000 1126888888
Q ss_pred HHHHHHHccCcEEEEec---ccccc--CCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhCCCccc--ccCCC
Q 022982 190 RAERCLEAGADMIMIDS---DDVCK--HADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYGPKVNL--FVDHS 261 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEa---rGI~d--~~G~~r~d~v~~ii~~l~~eklifEAP-~k~qQ~~~I~~fG~~VNL--gI~~~ 261 (289)
.+++ -|.|.+=+== -|.|. .+-.++.|.+++|-+.++.-=++==+. -|+..+..|+.||-++.= ||+.+
T Consensus 161 Fv~~---TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~~vpLVlHGgSsv~~~~~~~~~~~gg~~~~~~G~p~e 237 (305)
T 1rvg_A 161 FMER---TGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPE 237 (305)
T ss_dssp HHHH---HCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHH
T ss_pred HHHH---HCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhcCCCEEEeCCCCCcHHHHHHHHhhccccccCCCCCHH
Confidence 7774 5888665432 28998 566899999999999887443443333 477888999999999876 47766
Q ss_pred Cchhhhhhhcc
Q 022982 262 QVMDLECLRGR 272 (289)
Q Consensus 262 eVl~LE~LR~g 272 (289)
|+- +|.+.|
T Consensus 238 ~i~--~ai~~G 246 (305)
T 1rvg_A 238 DIK--KAISLG 246 (305)
T ss_dssp HHH--HHHHTT
T ss_pred HHH--HHHHCC
Confidence 653 244444
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.78 Score=42.48 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=86.4
Q ss_pred chhHHHHHHHhhcc-cccEEEecCcc--ccccChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHc
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGS--HSLMPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQV 113 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT--s~l~p~~~l~eKI~l~~~~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~l 113 (289)
.+.++.+.++.+.+ -++-+-|++|+ -...+.+.+.+.++.+++.|+.++ +|. .-++.++.+++.
T Consensus 100 s~eei~~~~~~~~~~g~~~i~~~gg~~~p~~~~~~~l~~ll~~ik~~g~~i~~t~G~-----------l~~e~l~~L~~a 168 (369)
T 1r30_A 100 EVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGT-----------LSESQAQRLANA 168 (369)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEECCSSCCTTTHHHHHHHHHHHHHTTSEEEEECSS-----------CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCC-----------CCHHHHHHHHHC
Confidence 45555555544322 36777787765 344566789999999999988654 242 235678888999
Q ss_pred CCCEEEecCCcc---------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 114 GFDTIELNVGSL---------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 114 GF~~IEISdGti---------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
|++.|-||=.+- .-+.+++.+.|+.+++.|+.+. .+.-.+.. ++.
T Consensus 169 Gvd~v~i~les~~e~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~--~~~I~Gl~------------------------et~ 222 (369)
T 1r30_A 169 GLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC--SGGIVGLG------------------------ETV 222 (369)
T ss_dssp CCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEE--CCEEECSS------------------------CCH
T ss_pred CCCEEeecCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeee--eeeEeeCC------------------------CCH
Confidence 999999886551 1456889999999999998654 33332211 136
Q ss_pred HHHHHHHHHHHHcc--CcEEEE
Q 022982 185 DLLIRRAERCLEAG--ADMIMI 204 (289)
Q Consensus 185 ~~~I~~~~~dLeAG--A~~Vii 204 (289)
+++++.++.-.+.| .+.|-+
T Consensus 223 ed~~~~l~~l~~l~~~~~~i~~ 244 (369)
T 1r30_A 223 KDRAGLLLQLANLPTPPESVPI 244 (369)
T ss_dssp HHHHHHHHHHHSSSSCCSEEEE
T ss_pred HHHHHHHHHHHhhcCCCCEEEe
Confidence 66677777666676 666554
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.35 Score=44.27 Aligned_cols=100 Identities=9% Similarity=0.067 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCCEEEecCCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~--------i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
.+.++.+.+.|++.|-|.+++-+ ++.++ -.+.|+.+++.|..|-.+++.-++. ..+
T Consensus 86 ~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~-----e~~------- 153 (302)
T 2ftp_A 86 LKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGC-----PYD------- 153 (302)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCB-----TTT-------
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeC-----CcC-------
Confidence 46788888899999999887744 34333 3577899999999987777764321 111
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+..|++.+++.+++..++||+.|-+ .|..|-..+..+.++++.+
T Consensus 154 --------~~~~~~~~~~~~~~~~~~G~d~i~l-----~DT~G~~~P~~~~~lv~~l 197 (302)
T 2ftp_A 154 --------GDVDPRQVAWVARELQQMGCYEVSL-----GDTIGVGTAGATRRLIEAV 197 (302)
T ss_dssp --------BCCCHHHHHHHHHHHHHTTCSEEEE-----EESSSCCCHHHHHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHcCCCEEEE-----eCCCCCcCHHHHHHHHHHH
Confidence 0126999999999999999998764 4666766777777766544
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.26 Score=42.56 Aligned_cols=101 Identities=11% Similarity=0.121 Sum_probs=74.2
Q ss_pred HHHHHHHhhccc-ccEEEecCcc-----------ccccChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHH
Q 022982 42 VLEDIFESMGQF-VDGLKFSGGS-----------HSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVE 108 (289)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GT-----------s~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~a~~qg~~~~~~yl~ 108 (289)
.+++.++.+.+. .|.+=+.... ...++++.+++.-++++++|+.++. +.+.. ...+.+++.++
T Consensus 23 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~----~~~~~~~~~i~ 98 (262)
T 3p6l_A 23 PLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA----EKSSDWEKMFK 98 (262)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC----SSTTHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC----ccHHHHHHHHH
Confidence 355566555554 7888776543 1234566789999999999998775 33322 23457999999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 022982 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (289)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g 151 (289)
.|+.+|.+.|-+.-| .+.+.++.+.+++.|+++.-|-.
T Consensus 99 ~A~~lGa~~v~~~~~-----~~~~~~l~~~a~~~gv~l~~En~ 136 (262)
T 3p6l_A 99 FAKAMDLEFITCEPA-----LSDWDLVEKLSKQYNIKISVHNH 136 (262)
T ss_dssp HHHHTTCSEEEECCC-----GGGHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHcCCCEEEecCC-----HHHHHHHHHHHHHhCCEEEEEeC
Confidence 999999999999865 46778999999999998666655
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=93.47 E-value=1.6 Score=41.37 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=52.9
Q ss_pred HHHHHH---HhhcccccEEEecCccc------cccChhHHHHHHHHHHh--------CCce----ecCC-cHHHHHHHhC
Q 022982 42 VLEDIF---ESMGQFVDGLKFSGGSH------SLMPKPFIEEVVKRAHQ--------HDVY----VSTG-DWAEHLIRNG 99 (289)
Q Consensus 42 ~~~DlL---e~ag~yID~lKfg~GTs------~l~p~~~l~eKI~l~~~--------~gV~----v~~G-tlfE~a~~qg 99 (289)
..+|+. +..++|.|++=+=.||- .+..++.+.+.++..++ .+++ +.|+ +.
T Consensus 162 ~~~dy~~~~~~~~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~-------- 233 (367)
T 3zwt_A 162 AAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTS-------- 233 (367)
T ss_dssp HHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCH--------
T ss_pred CHHHHHHHHHHHhhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCH--------
Confidence 445554 45667788887766542 45667778888877654 3444 4454 22
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccC
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGSLEI 127 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i 127 (289)
+.+.++.+.|.+.|.|.|-+++.+...
T Consensus 234 -~~~~~ia~~~~~aGadgi~v~ntt~~r 260 (367)
T 3zwt_A 234 -QDKEDIASVVKELGIDGLIVTNTTVSR 260 (367)
T ss_dssp -HHHHHHHHHHHHHTCCEEEECCCBSCC
T ss_pred -HHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence 257788899999999999999998654
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.43 Score=44.09 Aligned_cols=157 Identities=10% Similarity=0.076 Sum_probs=104.7
Q ss_pred hhHHHHHHHhhcccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceec------CCcHHHHHHHhCCch
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSA 102 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~ 102 (289)
...++..++.- +|.+-+...+|-.+.+ +.+++-|+.++++|..|. .|--++- .-+++.
T Consensus 84 ~~~i~~a~~~g---~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~--~~~~~~ 158 (307)
T 1ydo_A 84 QRGLENALEGG---INEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEK--DVPIEQ 158 (307)
T ss_dssp HHHHHHHHHHT---CSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTB--CCCHHH
T ss_pred HHhHHHHHhCC---cCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCC--CCCHHH
Confidence 34555566643 6666666666544221 345788999999999884 2322221 223446
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.++.+.+.++|.+.|=|.|-.--+.+++-.++|+.+++. +. .-.+++.+. .|
T Consensus 159 ~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~l~~H~H-------nd------------------ 211 (307)
T 1ydo_A 159 VIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLAR-FP-ANQIALHFH-------DT------------------ 211 (307)
T ss_dssp HHHHHHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTT-SC-GGGEEEECB-------GG------------------
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh-CC-CCeEEEEEC-------CC------------------
Confidence 7777788899999999999988889999999999999884 21 113455321 11
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecccccc------CCCCccHHHHHHHHhccC
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLG 229 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d------~~G~~r~d~v~~ii~~l~ 229 (289)
...-+..+...++|||+.|=.=--|+=. ..||..++.+-..+...|
T Consensus 212 -~Gla~AN~laAv~aGa~~vd~tv~GlGecp~a~graGN~~~E~lv~~L~~~g 263 (307)
T 1ydo_A 212 -RGTALANMVTALQMGITVFDGSAGGLGGCPYAPGSSGNAATEDIVYMLEQMD 263 (307)
T ss_dssp -GSCHHHHHHHHHHHTCCEEEEBGGGCCEETTEEEEECBCBHHHHHHHHHHTT
T ss_pred -CchHHHHHHHHHHhCCCEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhcC
Confidence 2223677788999999865333347766 789999887776765544
|
| >2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=93.25 E-value=0.77 Score=40.65 Aligned_cols=136 Identities=14% Similarity=0.101 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cC--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL-EI--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-~i--~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 178 (289)
.+++.++.++++||+.||+..... .+ +..+..++-+.+++.|+++.. ++. . .... ..|+ ...
T Consensus 37 ~~~~~l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~-~--~~~~-~~~~--------~~~-- 101 (296)
T 2g0w_A 37 SFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTE-VEY-I--TQWG-TAED--------RTA-- 101 (296)
T ss_dssp CHHHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEE-EEC-B--CCCS-STTT--------CCH--
T ss_pred CHHHHHHHHHHcCCCEEEeCHHHHHHHHhcCCcHHHHHHHHHHcCCceEe-ehh-h--hccc-cCCh--------HHH--
Confidence 789999999999999999975321 11 234556788888999998765 222 1 1110 0011 000
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCc--cHHHHHHHHhc-cCCCceEEec------CCchhHHHHHHH
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSL--RADIIAKVIGR-LGLEKTMFEA------TNPRTSEWFIRR 249 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~--r~d~v~~ii~~-l~~eklifEA------P~k~qQ~~~I~~ 249 (289)
+..+.+.+.++..-+.||..|.+ +- ... -.+ -.+.+.++.+. .|+ +|.+|. ....+-..+++.
T Consensus 102 ---~~~~~~~~~i~~A~~lGa~~v~~-g~--~~~-~~~~~~~~~l~~l~~~a~Gv-~l~lE~~~~~~~~~~~~~~~l~~~ 173 (296)
T 2g0w_A 102 ---EQQKKEQTTFHMARLFGVKHINC-GL--LEK-IPEEQIIVALGELCDRAEEL-IIGLEFMPYSGVADLQAAWRVAEA 173 (296)
T ss_dssp ---HHHHHHHHHHHHHHHHTCCEEEE-CC--CSC-CCHHHHHHHHHHHHHHHTTS-EEEEECCTTSSSCSHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHcCCCEEEE-cC--CCC-CCHHHHHHHHHHHHHHhcCC-EEEEEecCCCCCCCHHHHHHHHHH
Confidence 01344455555555789999988 32 211 111 12223333322 344 677885 345566789999
Q ss_pred hCC-CcccccCC
Q 022982 250 YGP-KVNLFVDH 260 (289)
Q Consensus 250 fG~-~VNLgI~~ 260 (289)
.|+ +|-+.+|.
T Consensus 174 v~~~~vgl~~D~ 185 (296)
T 2g0w_A 174 CGRDNAQLICDT 185 (296)
T ss_dssp HTCTTEEEEEEH
T ss_pred hCCCCeEEEEeh
Confidence 985 44443443
|
| >2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.91 Score=40.24 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS-LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt-i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
.+++ ++.++++||+.||+.... ...+.++..++.+.+++.|+++..-.+.- ...... ..|++. +
T Consensus 38 ~l~~-l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~-~~~~l~-~~d~~~--------r---- 102 (309)
T 2hk0_A 38 FGPY-IEKVAKLGFDIIEVAAHHINEYSDAELATIRKSAKDNGIILTAGIGPS-KTKNLS-SEDAAV--------R---- 102 (309)
T ss_dssp SHHH-HHHHHHTTCSEEEEEHHHHTTSCHHHHHHHHHHHHHTTCEEEEECCCC-SSSCSS-CSCHHH--------H----
T ss_pred cHHH-HHHHHHhCCCEEEeccCCccccchhhHHHHHHHHHHcCCeEEEecCCC-CCCCCC-CCCHHH--------H----
Confidence 7889 999999999999998542 23344677788899999999977621110 000000 111100 0
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEec---cccccCCCCccH-------HHHH---HHHhccCCCceEEecC---------
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRA-------DIIA---KVIGRLGLEKTMFEAT--------- 238 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~~G~~r~-------d~v~---~ii~~l~~eklifEAP--------- 238 (289)
....+.+.+.++..-+.||..|++-. .|.+.....-+. +.+. +.++..|+ +|.+|.-
T Consensus 103 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lEn~~~~~~~~~~ 181 (309)
T 2hk0_A 103 AAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGI-NLCIEVLNRFENHVLN 181 (309)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTC-EEEEECCCTTTCSSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHHHHHHcCC-EEEEeecccccccccC
Confidence 01244555566666678999998542 133211110111 1222 23334454 5888864
Q ss_pred CchhHHHHHHHhCC-CcccccCCCCc
Q 022982 239 NPRTSEWFIRRYGP-KVNLFVDHSQV 263 (289)
Q Consensus 239 ~k~qQ~~~I~~fG~-~VNLgI~~~eV 263 (289)
...+-..++++.|+ +|-+.+|....
T Consensus 182 ~~~~~~~l~~~v~~~~vg~~~D~~H~ 207 (309)
T 2hk0_A 182 TAAEGVAFVKDVGKNNVKVMLDTFHM 207 (309)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEEHHHH
T ss_pred CHHHHHHHHHHcCCCCeEEEEehhhH
Confidence 34567789999984 55544554433
|
| >2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.44 Score=41.82 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee--ecCCCCCCC-ccccccccccccCCCCc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV--MFNKSDIPS-DRDRAFGAYVARAPRST 178 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~--k~~~~evg~-~~d~~~~~~~~~~~~~~ 178 (289)
.+++.++.++++||+.||+..... ...+..++-+.+++.|+++.+ ++. .++...... ..|++. +
T Consensus 42 ~~~~~l~~~~~~G~~~vEl~~~~~--~~~~~~~~~~~l~~~gl~~~~-~~~~~p~~~~~~~l~~~d~~~--------r-- 108 (290)
T 2zvr_A 42 DLRKGMELAKRVGYQAVEIAVRDP--SIVDWNEVKILSEELNLPICA-IGTGQAYLADGLSLTHPNDEI--------R-- 108 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSCG--GGSCHHHHHHHHHHHTCCEEE-EECTHHHHTTCCCTTCSSHHH--------H--
T ss_pred CHHHHHHHHHHhCCCEEEEcCCCc--chhhHHHHHHHHHHcCCeEEE-EeccCccccCCCCCCCCCHHH--------H--
Confidence 688999999999999999986532 235566788888999999743 222 000000000 011100 0
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHH-------HHHHHHhccCCCceEEecC---------Cchh
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRAD-------IIAKVIGRLGLEKTMFEAT---------NPRT 242 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d-------~v~~ii~~l~~eklifEAP---------~k~q 242 (289)
....+.+.+.++..-+.||..|+.-..|.+. +.-+.+ .+.++.+...-=+|.+|.- ...+
T Consensus 109 --~~~~~~~~~~i~~A~~lG~~~v~~~~~g~~~--~~~~~~~~~~~~~~l~~l~~~a~~v~l~lEn~~~~~~~~~~~~~~ 184 (290)
T 2zvr_A 109 --KKAIERVVKHTEVAGMFGALVIIGLVRGRRE--GRSYEETEELFIESMKRLLELTEHAKFVIEPLNRYETDFINTIDD 184 (290)
T ss_dssp --HHHHHHHHHHHHHHHHHTCEEEESGGGCCCT--TSCHHHHHHHHHHHHHHHHHHCSSCCEEECCCCTTTCSSCCSHHH
T ss_pred --HHHHHHHHHHHHHHHHcCCCEEEecCCCCCC--CcCHHHHHHHHHHHHHHHHHHhccCEEEEEeCCCcCccccCCHHH
Confidence 0124455556666667899998832124321 112222 2233332211146888863 4567
Q ss_pred HHHHHHHhCC-CcccccCCCC
Q 022982 243 SEWFIRRYGP-KVNLFVDHSQ 262 (289)
Q Consensus 243 Q~~~I~~fG~-~VNLgI~~~e 262 (289)
-..+++..|+ +|-+..|...
T Consensus 185 ~~~l~~~~~~~~vgl~~D~~h 205 (290)
T 2zvr_A 185 ALRILRKINSNRVGILADTFH 205 (290)
T ss_dssp HHHHHHHHCCTTEEEEEEHHH
T ss_pred HHHHHHHcCCCCEEEEEehhH
Confidence 7789999984 5544355443
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.16 E-value=1.9 Score=39.84 Aligned_cols=145 Identities=12% Similarity=0.132 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+ |
T Consensus 45 ~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGv-------g---------------- 101 (315)
T 3na8_A 45 PALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSV-------S---------------- 101 (315)
T ss_dssp HHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEEC-------C----------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEec-------C----------------
Confidence 368888999999999999876543 479999999999999883 0011111122 1
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~----~G~~r~d~v~~ii~~ 227 (289)
..+..+.|++++..-++|||.|++=.- -||+. .-++..+.+.+++.+
T Consensus 102 ----~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~ 177 (315)
T 3na8_A 102 ----DLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRIVRE 177 (315)
T ss_dssp ----CSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHHHhc
Confidence 114788899999999999999999652 15663 236778888888555
Q ss_pred cCCCce--EEec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 228 LGLEKT--MFEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 228 l~~ekl--ifEA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
.| +| |=|+ .+-.+...+++..++++.+.--.++ +.+++|..|--|
T Consensus 178 ~p--nIvgiKdssgd~~~~~~~~~~~~~~f~v~~G~D~-~~l~~l~~G~~G 225 (315)
T 3na8_A 178 VD--NVTMVKESTGDIQRMHKLRLLGEGRVPFYNGCNP-LALEAFVAGAKG 225 (315)
T ss_dssp ST--TEEEEEECSSCHHHHHHHHHHTTTCSCEEECCGG-GHHHHHHHTCSE
T ss_pred CC--CEEEEECCCCCHHHHHHHHHHcCCCEEEEeCchH-HHHHHHHCCCCE
Confidence 55 33 2244 4566777888888888777654444 458998877444
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.29 Score=43.38 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=59.3
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
++++.+.|.|.|-+.. +.-.+++...++++.+++.|+.+..++.-
T Consensus 94 i~~~~~aGad~I~l~~-~~~~~p~~l~~~i~~~~~~g~~v~~~v~t---------------------------------- 138 (229)
T 3q58_A 94 VDALAQAGADIIAFDA-SFRSRPVDIDSLLTRIRLHGLLAMADCST---------------------------------- 138 (229)
T ss_dssp HHHHHHHTCSEEEEEC-CSSCCSSCHHHHHHHHHHTTCEEEEECSS----------------------------------
T ss_pred HHHHHHcCCCEEEECc-cccCChHHHHHHHHHHHHCCCEEEEecCC----------------------------------
Confidence 5678999999997644 44445577779999999988876654321
Q ss_pred HHHHHHHHHHccCcEEEEeccccccC--CCCccHHHHHHHHh
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKH--ADSLRADIIAKVIG 226 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~--~G~~r~d~v~~ii~ 226 (289)
.+.+++..++||++|.+-.+|.+.. ......+++.++.+
T Consensus 139 -~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~ 179 (229)
T 3q58_A 139 -VNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSH 179 (229)
T ss_dssp -HHHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHT
T ss_pred -HHHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHH
Confidence 4667788899999998877776443 22334566776665
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=93.01 E-value=0.47 Score=43.04 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=81.6
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
+.+++..|-|+|=+.-. .++.++..++++.+++.|+.++-|+.-
T Consensus 116 i~ea~~~GAD~ilLi~a--~l~~~~l~~l~~~a~~lGl~~lvEv~~---------------------------------- 159 (251)
T 1i4n_A 116 VKLASSVGADAILIIAR--ILTAEQIKEIYEAAEELGMDSLVEVHS---------------------------------- 159 (251)
T ss_dssp HHHHHHTTCSEEEEEGG--GSCHHHHHHHHHHHHTTTCEEEEEECS----------------------------------
T ss_pred HHHHHHcCCCEEEEecc--cCCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 44589999999998877 467789999999999999999888764
Q ss_pred HHHHHHHHHHc-cCcEEEEeccccccCCCCccHHHHHHHHhccCCCc-eEEecCCc-hhHHHHHHHhCCCc
Q 022982 187 LIRRAERCLEA-GADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEK-TMFEATNP-RTSEWFIRRYGPKV 254 (289)
Q Consensus 187 ~I~~~~~dLeA-GA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ek-lifEAP~k-~qQ~~~I~~fG~~V 254 (289)
.+++++.+++ |++.|-|+-|++-.- .+.-+...+++..++.+. +|-|+=-. ..+...+... .+.
T Consensus 160 -~eE~~~A~~l~g~~iIGinnr~l~t~--~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~a 226 (251)
T 1i4n_A 160 -REDLEKVFSVIRPKIIGINTRDLDTF--EIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK-VNA 226 (251)
T ss_dssp -HHHHHHHHTTCCCSEEEEECBCTTTC--CBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-CSE
T ss_pred -HHHHHHHHhcCCCCEEEEeCcccccC--CCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-CCE
Confidence 3567888999 999999999987443 344566677888887654 55577643 5555555555 443
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.01 E-value=2.4 Score=38.45 Aligned_cols=144 Identities=16% Similarity=0.096 Sum_probs=101.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=.|+ |
T Consensus 21 ~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pviaGv-------g--------------- 77 (292)
T 2vc6_A 21 VALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANG-RVPVIAGA-------G--------------- 77 (292)
T ss_dssp HHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSCBEEEC-------C---------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEec-------C---------------
Confidence 36888899999999999987653 4489999999999999874 2 11111233 1
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHHh
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVIG 226 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~---~G-~~r~d~v~~ii~ 226 (289)
..+..+.|++++..-++|||.|++=.- -+|+. .| ++..+.+.++++
T Consensus 78 -----~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (292)
T 2vc6_A 78 -----SNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFE 152 (292)
T ss_dssp -----CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred -----CccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHh
Confidence 113678899999999999999998652 15653 23 678888888875
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 227 RLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 227 ~l~~eklif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
+. .+|+- |+ .+-.+...+++..++++.+. .-+|-+.+++|..|--|
T Consensus 153 ~~--pnIvgiK~s~gd~~~~~~~~~~~~~~f~v~-~G~d~~~~~~l~~G~~G 201 (292)
T 2vc6_A 153 DC--PNVKGVXDATGNLLRPSLERMACGEDFNLL-TGEDGTALGYMAHGGHG 201 (292)
T ss_dssp HC--TTEEEEEECSCCTHHHHHHHHHSCTTSEEE-ESCGGGHHHHHHTTCCE
T ss_pred hC--CCEEEEecCCCCHHHHHHHHHHcCCCEEEE-ECchHHHHHHHHcCCCE
Confidence 34 34432 44 46677778888888877764 33455678999877554
|
| >1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.4 Score=41.47 Aligned_cols=145 Identities=10% Similarity=0.130 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCccccccccccccC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRDRAFGAYVARA 174 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~-evg~~~d~~~~~~~~~~ 174 (289)
.+++.++.++++||+.||+..... .++.++..++-+.+++.|+++.+ +..-.+.. ... ..|++
T Consensus 13 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~~~~l~-~~~~~-------- 82 (285)
T 1qtw_A 13 GLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQ-ILPHDSYLINLG-HPVTE-------- 82 (285)
T ss_dssp CHHHHHHHHHHTTCSEEECCSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCGGG-BCCBCCTTCCTT-CSSHH--------
T ss_pred CHHHHHHHHHHcCCCEEEeeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCCcee-EEecCCcccccC-CCCHH--------
Confidence 588999999999999999953322 35667888899999999998521 11110000 000 01110
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCC--Ccc---HHHHHHHHhc-cCCCceEEecC---------C
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHAD--SLR---ADIIAKVIGR-LGLEKTMFEAT---------N 239 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G--~~r---~d~v~~ii~~-l~~eklifEAP---------~ 239 (289)
.+ ....+.+.+.++..-+.||..|.+-.-....... ... .+.+.+++++ .|+ +|.+|.- .
T Consensus 83 ~r----~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv-~l~lEn~~~~~~~~~~~ 157 (285)
T 1qtw_A 83 AL----EKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGV-TAVIENTAGQGSNLGFK 157 (285)
T ss_dssp HH----HHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSC-EEEEECCCCCTTBCCSS
T ss_pred HH----HHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHhccCCC-EEEEecCCCCCCcccCC
Confidence 00 1124455556666667899999886532211100 001 1223444433 343 6888864 3
Q ss_pred chhHHHHHHHhC--CCcccccCCC
Q 022982 240 PRTSEWFIRRYG--PKVNLFVDHS 261 (289)
Q Consensus 240 k~qQ~~~I~~fG--~~VNLgI~~~ 261 (289)
..+-..+++..+ |+|-+.+|..
T Consensus 158 ~~~~~~l~~~v~~~~~~g~~~D~~ 181 (285)
T 1qtw_A 158 FEHLAAIIDGVEDKSRVGVCIDTC 181 (285)
T ss_dssp HHHHHHHHHHCSCGGGEEEEEEHH
T ss_pred HHHHHHHHHhhcCccceEEEEEhH
Confidence 455678899984 3444435543
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.77 Score=41.76 Aligned_cols=138 Identities=9% Similarity=0.129 Sum_probs=93.4
Q ss_pred chhHHHHHHHhhccc-ccEEEecCccc-cccChhHH--------------HHHHHHHHhCC--ceecCCcHHHHHHHhCC
Q 022982 39 SHNVLEDIFESMGQF-VDGLKFSGGSH-SLMPKPFI--------------EEVVKRAHQHD--VYVSTGDWAEHLIRNGP 100 (289)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GTs-~l~p~~~l--------------~eKI~l~~~~g--V~v~~GtlfE~a~~qg~ 100 (289)
.+..+.+++...-+- .|++=+|.=-| .+.+-..+ +.-.++.++.- +++..=|++...+..|
T Consensus 26 ~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~Pivlm~Y~N~i~~~G- 104 (252)
T 3tha_A 26 NLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSYG- 104 (252)
T ss_dssp CHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCSSEEEEECCHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCCEEEEeccCHHHHhh-
Confidence 567788888876554 89999997433 12222233 33444444432 3333337888888886
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+++|++.|++.|.|.+=|-| +|.++..++.+.++++|+...+=+.. .
T Consensus 105 --~e~F~~~~~~aGvdG~IipD----LP~eE~~~~~~~~~~~Gl~~I~lvaP---~------------------------ 151 (252)
T 3tha_A 105 --LEKFVKKAKSLGICALIVPE----LSFEESDDLIKECERYNIALITLVSV---T------------------------ 151 (252)
T ss_dssp --HHHHHHHHHHTTEEEEECTT----CCGGGCHHHHHHHHHTTCEECEEEET---T------------------------
T ss_pred --HHHHHHHHHHcCCCEEEeCC----CCHHHHHHHHHHHHHcCCeEEEEeCC---C------------------------
Confidence 89999999999999999887 88889999999999999986654422 0
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEecc-ccccCCCC
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADS 215 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEar-GI~d~~G~ 215 (289)
+++++++. -.+.+..+|-+-++ |++-....
T Consensus 152 --t~~eRi~~---ia~~a~gFiY~Vs~~GvTG~~~~ 182 (252)
T 3tha_A 152 --TPKERVKK---LVKHAKGFIYLLASIGITGTKSV 182 (252)
T ss_dssp --SCHHHHHH---HHTTCCSCEEEECCSCSSSCSHH
T ss_pred --CcHHHHHH---HHHhCCCeEEEEecCCCCCcccC
Confidence 13344444 44566677777776 77765533
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.48 Score=42.92 Aligned_cols=98 Identities=10% Similarity=0.070 Sum_probs=67.7
Q ss_pred HHHHHHHHcCCCEEEecCCcc--------cCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSL--------EIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti--------~i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 172 (289)
+-++.+.+.|++.|-|+...- ..+.++ -.+.|+.+++.|++|-.+++.-++. .|.
T Consensus 83 ~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~------e~~------- 149 (295)
T 1ydn_A 83 KGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVEC------PYD------- 149 (295)
T ss_dssp HHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEE------TTT-------
T ss_pred HHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecC------CcC-------
Confidence 456788889999999986332 344443 2456899999999987777653311 110
Q ss_pred cCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhc
Q 022982 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 173 ~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~ 227 (289)
+..|++++.+.++...++||+.|-+= |..|-..+..+.++++.
T Consensus 150 -------~~~~~~~~~~~~~~~~~~G~d~i~l~-----Dt~G~~~P~~~~~lv~~ 192 (295)
T 1ydn_A 150 -------GPVTPQAVASVTEQLFSLGCHEVSLG-----DTIGRGTPDTVAAMLDA 192 (295)
T ss_dssp -------EECCHHHHHHHHHHHHHHTCSEEEEE-----ETTSCCCHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHhcCCCEEEec-----CCCCCcCHHHHHHHHHH
Confidence 01269999999999999999987654 66676666666666643
|
| >3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.84 Score=39.45 Aligned_cols=128 Identities=11% Similarity=0.138 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCccccccccccccC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRDRAFGAYVARA 174 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~-evg~~~d~~~~~~~~~~ 174 (289)
.+++.++.++++||++||+.... ..++.++..++-+.+++.|+.. +.+-.+.. ...+ |++
T Consensus 15 ~~~~~~~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~---~~~h~~~~~~l~s--~~~-------- 81 (270)
T 3aam_A 15 GVAGAVEEATALGLTAFQIFAKSPRSWRPRALSPAEVEAFRALREASGGLP---AVIHASYLVNLGA--EGE-------- 81 (270)
T ss_dssp HHHHHHHHHHHHTCSCEEEESSCTTCCSCCCCCHHHHHHHHHHHHHTTCCC---EEEECCTTCCTTC--SST--------
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCce---EEEecCcccCCCC--CHH--------
Confidence 58889999999999999995532 2455778888889999999932 22211110 0111 111
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhc----cCCCceEEecC---------Cch
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR----LGLEKTMFEAT---------NPR 241 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~----l~~eklifEAP---------~k~ 241 (289)
.+ ..+.+.+.+.++..-+.||..|.+-.-.. +. +.-.+-+.++++. .|+ +|.+|.- ...
T Consensus 82 ~r----~~~~~~~~~~i~~a~~lGa~~vv~h~g~~-~~--~~~~~~l~~l~~~a~~~~gv-~l~lEn~~~~~~~~~~~~~ 153 (270)
T 3aam_A 82 LW----EKSVASLADDLEKAALLGVEYVVVHPGSG-RP--ERVKEGALKALRLAGVRSRP-VLLVENTAGGGEKVGARFE 153 (270)
T ss_dssp HH----HHHHHHHHHHHHHHHHHTCCEEEECCCBS-CH--HHHHHHHHHHHHHHTCCSSS-EEEEECCCCCTTBSCCSHH
T ss_pred HH----HHHHHHHHHHHHHHHHcCCCEEEECCCCC-CH--HHHHHHHHHHHHhhcccCCC-EEEEecCCCCCCccCCCHH
Confidence 01 12356666777777788999998865322 11 1122333444433 343 7888875 344
Q ss_pred hHHHHHHHh
Q 022982 242 TSEWFIRRY 250 (289)
Q Consensus 242 qQ~~~I~~f 250 (289)
+-..+++..
T Consensus 154 ~~~~l~~~v 162 (270)
T 3aam_A 154 ELAWLVADT 162 (270)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHhC
Confidence 556777776
|
| >3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.42 Score=42.98 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCC------cccC-----ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVG------SLEI-----PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG------ti~i-----~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 170 (289)
.+++.++.++++||++||+... ...+ +.++..++-+.+++.|+++.+ ++........ ++
T Consensus 37 ~l~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~-~~~~~~~~~~----~~----- 106 (305)
T 3obe_A 37 DMPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDDAGLRISS-SHLTPSLREY----TK----- 106 (305)
T ss_dssp THHHHHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHHTTCEEEE-EBCCCSCCCC----CG-----
T ss_pred CHHHHHHHHHHcCCCEEEecccccccccccCcCcccccccCHHHHHHHHHHCCCeEEE-eecccccccc----ch-----
Confidence 6999999999999999999853 1233 223677888889999999743 2221111100 00
Q ss_pred cccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 171 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 171 ~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
..+ ....+.+-+.++..-+.||.+|++-+
T Consensus 107 ---~~~----~~~~~~~~~~i~~A~~lG~~~v~~~~ 135 (305)
T 3obe_A 107 ---ENM----PKFDEFWKKATDIHAELGVSCMVQPS 135 (305)
T ss_dssp ---GGH----HHHHHHHHHHHHHHHHHTCSEEEECC
T ss_pred ---hhH----HHHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 000 01134444555555578999999853
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=92.57 E-value=1.1 Score=43.96 Aligned_cols=149 Identities=11% Similarity=0.149 Sum_probs=105.6
Q ss_pred HHHHHhh-cccccEEEecCccccccChhHHHHHHHHHHhCCceec-----CCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 44 EDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 44 ~DlLe~a-g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~-----~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
+..++.+ ..=+|.+-+-..++-+ +.+++-|+.++++|..+. ..+. ..+++.+-+..+.+.+.|.+.
T Consensus 103 ~~~v~~a~~~Gvd~i~if~~~sd~---~ni~~~i~~ak~~G~~v~~~i~~~~~~-----~~~~e~~~~~a~~l~~~Gad~ 174 (464)
T 2nx9_A 103 DTFVERAVKNGMDVFRVFDAMNDV---RNMQQALQAVKKMGAHAQGTLCYTTSP-----VHNLQTWVDVAQQLAELGVDS 174 (464)
T ss_dssp HHHHHHHHHTTCCEEEECCTTCCT---HHHHHHHHHHHHTTCEEEEEEECCCCT-----TCCHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHhCCcCEEEEEEecCHH---HHHHHHHHHHHHCCCEEEEEEEeeeCC-----CCCHHHHHHHHHHHHHCCCCE
Confidence 3344333 3448888877665555 579999999999999762 2221 124456677777888999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHc
Q 022982 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (289)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeA 197 (289)
|=|.|-.--+.+.+-.++|+.+++. +. -.+++.+ ..+ ...-+-.+...++|
T Consensus 175 I~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~i~~H~-Hnd-------------------------~GlAvAN~laAv~A 225 (464)
T 2nx9_A 175 IALKDMAGILTPYAAEELVSTLKKQ-VD--VELHLHC-HST-------------------------AGLADMTLLKAIEA 225 (464)
T ss_dssp EEEEETTSCCCHHHHHHHHHHHHHH-CC--SCEEEEE-CCT-------------------------TSCHHHHHHHHHHT
T ss_pred EEEcCCCCCcCHHHHHHHHHHHHHh-cC--CeEEEEE-CCC-------------------------CChHHHHHHHHHHh
Confidence 9999988888899989999999885 22 2355533 111 12236777788999
Q ss_pred cCcEEEEecc--ccccCCCCccHHHHHHHHhccCCC
Q 022982 198 GADMIMIDSD--DVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 198 GA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
||+.| ++- |+=...||...+.+-..+...+.+
T Consensus 226 Ga~~V--D~ti~g~gertGN~~lE~lv~~L~~~g~~ 259 (464)
T 2nx9_A 226 GVDRV--DTAISSMSGTYGHPATESLVATLQGTGYD 259 (464)
T ss_dssp TCSEE--EEBCGGGCSTTSCCBHHHHHHHHTTSTTC
T ss_pred CCCEE--EEeccccCCCCcCHHHHHHHHHHHhcCCC
Confidence 99955 654 888889999988887777766543
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.2 Score=46.92 Aligned_cols=121 Identities=19% Similarity=0.330 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----CChhHHHHHHHHHH
Q 022982 71 FIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----IPEETLLRYVRLVK 140 (289)
Q Consensus 71 ~l~eKI~l~~~~-----gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----i~~~~r~~lI~~~~ 140 (289)
.+.|.|+-.++. +|++++..|.+--+. .+...++.+.+.+.|+|+|+||+|... .++.-..++++.++
T Consensus 196 ~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~--~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik 273 (340)
T 3gr7_A 196 FLGEVIDAVREVWDGPLFVRISASDYHPDGLT--AKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIR 273 (340)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEESCCCSTTSCC--GGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEeccccccCCCCC--HHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHH
Confidence 455666666543 446677554432111 235667788888899999999988642 12333456777777
Q ss_pred HcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc-CcEEEEeccccccCCCCccHH
Q 022982 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHADSLRAD 219 (289)
Q Consensus 141 ~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG-A~~ViiEarGI~d~~G~~r~d 219 (289)
+. +. +|=++. | .+. | .+.+++.|++| ||.|++ +|.+.. +++
T Consensus 274 ~~-~~-iPVi~~-------G--------gI~-----------s----~e~a~~~L~~G~aD~V~i-GR~~la-----nPd 315 (340)
T 3gr7_A 274 RE-AD-IPTGAV-------G--------LIT-----------S----GWQAEEILQNGRADLVFL-GRELLR-----NPY 315 (340)
T ss_dssp HH-TT-CCEEEE-------S--------SCC-----------C----HHHHHHHHHTTSCSEEEE-CHHHHH-----CTT
T ss_pred HH-cC-CcEEee-------C--------CCC-----------C----HHHHHHHHHCCCeeEEEe-cHHHHh-----Cch
Confidence 73 11 221221 1 111 1 46778889999 999998 465443 257
Q ss_pred HHHHHHhccCCC
Q 022982 220 IIAKVIGRLGLE 231 (289)
Q Consensus 220 ~v~~ii~~l~~e 231 (289)
++.++.+.++.+
T Consensus 316 l~~ki~~~l~~~ 327 (340)
T 3gr7_A 316 WPYAAARELGAK 327 (340)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHCCCC
Confidence 889999888854
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=92.40 E-value=0.45 Score=42.18 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=59.6
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
++++.+.|.|.|-+... .-..++...++++.+++.|+.+..++.-
T Consensus 94 i~~~~~~Gad~V~l~~~-~~~~p~~l~~~i~~~~~~g~~v~~~v~t---------------------------------- 138 (232)
T 3igs_A 94 VDALAQAGAAIIAVDGT-ARQRPVAVEALLARIHHHHLLTMADCSS---------------------------------- 138 (232)
T ss_dssp HHHHHHHTCSEEEEECC-SSCCSSCHHHHHHHHHHTTCEEEEECCS----------------------------------
T ss_pred HHHHHHcCCCEEEECcc-ccCCHHHHHHHHHHHHHCCCEEEEeCCC----------------------------------
Confidence 56789999999977544 4344467778999999988776654321
Q ss_pred HHHHHHHHHHccCcEEEEeccccccC--CCCccHHHHHHHHhc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKH--ADSLRADIIAKVIGR 227 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~--~G~~r~d~v~~ii~~ 227 (289)
.+.+++..++||++|.+-.+|.... ......+++.++.+.
T Consensus 139 -~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~ 180 (232)
T 3igs_A 139 -VDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA 180 (232)
T ss_dssp -HHHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT
T ss_pred -HHHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc
Confidence 4667788899999998877776442 223456777777653
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=92.37 E-value=0.79 Score=42.67 Aligned_cols=113 Identities=13% Similarity=0.179 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCC--------------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVG--------------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG--------------ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~ 167 (289)
..+.|++.+|+.||..| ++=- --.|..++-.++|+++++.||...+=+-
T Consensus 109 ~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~~v~---------------- 171 (286)
T 2p10_A 109 VMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPYVF---------------- 171 (286)
T ss_dssp CHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCEEC----------------
T ss_pred CHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEEecC----------------
Confidence 58999999999999999 8776 3457778888999999999887444110
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc----ccccCCCCccH----HHHHHHH---hccCCC-ceEE
Q 022982 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD----DVCKHADSLRA----DIIAKVI---GRLGLE-KTMF 235 (289)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar----GI~d~~G~~r~----d~v~~ii---~~l~~e-klif 235 (289)
+ .++++.-.+||||.|.+|-- |+....-.+.. +.++++. .++.++ .+|.
T Consensus 172 ---------------~----~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc 232 (286)
T 2p10_A 172 ---------------S----PEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILS 232 (286)
T ss_dssp ---------------S----HHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEE
T ss_pred ---------------C----HHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEe
Confidence 1 56777788999999999986 55444333332 2344444 445444 4556
Q ss_pred ec-CC-chhHHHHHHHh
Q 022982 236 EA-TN-PRTSEWFIRRY 250 (289)
Q Consensus 236 EA-P~-k~qQ~~~I~~f 250 (289)
-| |- ..+-+.++.+.
T Consensus 233 ~gGpIstpeDv~~~l~~ 249 (286)
T 2p10_A 233 HGGPIANPEDARFILDS 249 (286)
T ss_dssp ESTTCCSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHhc
Confidence 66 53 23345555555
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=92.33 E-value=0.7 Score=45.34 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=84.5
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
+.+++..|-|+|=+.... ++.++..++++.+++.|+.++-|+.-
T Consensus 123 i~ea~~~GAD~ILLi~a~--l~~~~l~~l~~~a~~lgm~~LvEvh~---------------------------------- 166 (452)
T 1pii_A 123 IYLARYYQADACLLMLSV--LDDDQYRQLAAVAHSLEMGVLTEVSN---------------------------------- 166 (452)
T ss_dssp HHHHHHTTCSEEEEETTT--CCHHHHHHHHHHHHHTTCEEEEEECS----------------------------------
T ss_pred HHHHHHcCCCEEEEEccc--CCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 445899999999998885 66788999999999999999988765
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCCccc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPKVNL 256 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e-klifEAP~-k~qQ~~~I~~fG~~VNL 256 (289)
.+++++.+++||+.|-|+-|++-. -++.-+...+++..+|.+ -+|-|+=- -.++...+... .+-=|
T Consensus 167 -~eE~~~A~~lga~iIGinnr~L~t--~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avL 234 (452)
T 1pii_A 167 -EEEQERAIALGAKVVGINNRDLRD--LSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFL 234 (452)
T ss_dssp -HHHHHHHHHTTCSEEEEESEETTT--TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEEE
T ss_pred -HHHHHHHHHCCCCEEEEeCCCCCC--CCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEEE
Confidence 467788999999999999998744 355577778888888755 46777763 34556666655 44333
|
| >3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=0.57 Score=40.91 Aligned_cols=146 Identities=14% Similarity=0.201 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
.+++.++.++++||+.||+....+ .++.++..++-+.+++.|+++..-.+.... .... ..|++. +
T Consensus 18 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~-~~l~-~~d~~~--------r---- 83 (294)
T 3vni_A 18 DYKYYIEKVAKLGFDILEIAASPLPFYSDIQINELKACAHGNGITLTVGHGPSAE-QNLS-SPDPDI--------R---- 83 (294)
T ss_dssp CHHHHHHHHHHHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEEEEEECCCGG-GCTT-CSCHHH--------H----
T ss_pred CHHHHHHHHHHcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeEEEeecCCCC-cCCC-CCCHHH--------H----
Confidence 689999999999999999997643 567888889999999999997652221000 0000 011100 0
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEec-ccc---ccCCCCccHH-------HHH---HHHhccCCCceEEecC--------
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDS-DDV---CKHADSLRAD-------IIA---KVIGRLGLEKTMFEAT-------- 238 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEa-rGI---~d~~G~~r~d-------~v~---~ii~~l~~eklifEAP-------- 238 (289)
....+.+.+.++..-+.||..|.+-- -|. +.. +.-+.+ .+. +.++..|+ +|.+|.-
T Consensus 84 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lEn~~~~~~~~~ 161 (294)
T 3vni_A 84 KNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTK-TIDKKGDWERSVESVREVAKVAEACGV-DFCLEVLNRFENYLI 161 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTTS-CCCHHHHHHHHHHHHHHHHHHHHHTTC-EEEEECCCTTTCSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCCC-CCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEEecCcccCccc
Confidence 01234455555556678999997521 111 111 111111 122 22334454 5888853
Q ss_pred -CchhHHHHHHHhCC-CcccccCCCCc
Q 022982 239 -NPRTSEWFIRRYGP-KVNLFVDHSQV 263 (289)
Q Consensus 239 -~k~qQ~~~I~~fG~-~VNLgI~~~eV 263 (289)
+..+-..+++..++ +|-+.+|..+.
T Consensus 162 ~~~~~~~~l~~~v~~~~vg~~~D~~h~ 188 (294)
T 3vni_A 162 NTAQEGVDFVKQVDHNNVKVMLDTFHM 188 (294)
T ss_dssp CSHHHHHHHHHHHCCTTEEEEEEHHHH
T ss_pred CCHHHHHHHHHHcCCCCEEEEEEhhhh
Confidence 34567789999984 44443555443
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=92.15 E-value=0.74 Score=42.93 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=110.1
Q ss_pred ceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHH
Q 022982 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKE 105 (289)
Q Consensus 26 lT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~ 105 (289)
+.++..|+.. -.+.++...++ -+|.+-+.. .+..-+..++-++.++++|+.+... +|.+....++.+.+
T Consensus 85 i~~l~~p~~~---~~~~i~~a~~a---Gvd~v~I~~---~~s~~~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~e~~~~ 153 (345)
T 1nvm_A 85 IATLLLPGIG---SVHDLKNAYQA---GARVVRVAT---HCTEADVSKQHIEYARNLGMDTVGF--LMMSHMIPAEKLAE 153 (345)
T ss_dssp EEEEECBTTB---CHHHHHHHHHH---TCCEEEEEE---ETTCGGGGHHHHHHHHHHTCEEEEE--EESTTSSCHHHHHH
T ss_pred EEEEecCCcc---cHHHHHHHHhC---CcCEEEEEE---eccHHHHHHHHHHHHHHCCCEEEEE--EEeCCCCCHHHHHH
Confidence 4444456551 13344444443 477776652 2333367899999999999976543 12233344557888
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHH
Q 022982 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (289)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (289)
..+.+.+.|.+.|=+.|-+-.+.+++-.++|+.++++ +...-.+++.+. . | ..
T Consensus 154 ia~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~pi~~H~H-n------~-------------------~G 206 (345)
T 1nvm_A 154 QGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAV-LKPETQVGMHAH-H------N-------------------LS 206 (345)
T ss_dssp HHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHH-SCTTSEEEEECB-C------T-------------------TS
T ss_pred HHHHHHHCCCCEEEECCCcCccCHHHHHHHHHHHHHh-cCCCceEEEEEC-C------C-------------------cc
Confidence 8888999999999999988888899999999999985 110123555331 1 1 22
Q ss_pred HHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhccC
Q 022982 186 LLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 186 ~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
.-+..+...++|||+. |++- |+=...||...+.+-..+...|
T Consensus 207 ~avAn~laA~~aGa~~--vd~tv~GlG~~aGN~~le~lv~~L~~~g 250 (345)
T 1nvm_A 207 LGVANSIVAVEEGCDR--VDASLAGMGAGAGNAPLEVFIAVAERLG 250 (345)
T ss_dssp CHHHHHHHHHHTTCCE--EEEBGGGCSSTTCBCBHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCE--EEecchhccCCccCcCHHHHHHHHHhcC
Confidence 2377888899999986 5764 8888899999887776666544
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=92.11 E-value=4.7 Score=37.21 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=102.0
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. +=++.-=+|+ |
T Consensus 43 ~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGv-------g---------------- 99 (315)
T 3si9_A 43 KAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGA-------G---------------- 99 (315)
T ss_dssp HHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEEC-------C----------------
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeC-------C----------------
Confidence 36888899999999999965443 3489999999999999884 1011111122 1
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~----~G~~r~d~v~~ii~~ 227 (289)
..+..+.|++++..-++|||-|++=.- -||+. .-++..+.+.+++++
T Consensus 100 ----~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~ 175 (315)
T 3si9_A 100 ----SNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCRD 175 (315)
T ss_dssp ----CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHHhh
Confidence 114788899999999999999998662 15653 346778889988865
Q ss_pred cCCCce--EEec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 228 LGLEKT--MFEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 228 l~~ekl--ifEA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
.| +| |=|+ .+-.+...+++..++++.+.- -+|-+.+++|..|--|
T Consensus 176 ~p--nIvgiKdssgd~~~~~~l~~~~~~~f~v~~-G~d~~~l~~l~~G~~G 223 (315)
T 3si9_A 176 FK--NIIGVKDATGKIERASEQREKCGKDFVQLS-GDDCTALGFNAHGGVG 223 (315)
T ss_dssp CT--TEEEEEECSCCTHHHHHHHHHHCSSSEEEE-SCGGGHHHHHHTTCCE
T ss_pred CC--CEEEEEeCCCCHHHHHHHHHHcCCCeEEEe-cCHHHHHHHHHcCCCE
Confidence 65 33 2244 567777888999998877743 3455678889877544
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.48 Score=43.70 Aligned_cols=131 Identities=15% Similarity=0.229 Sum_probs=78.5
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (289)
.+...+..+|- ++++=.+ .++.+.+++.++.+++. +.++ | .++ +... .++++++.|.+.|+|.|+
T Consensus 27 ~la~av~~aG~-lG~i~~~-----~~~~~~~~~~i~~i~~~~~~p~--gvnl~---~~~~--~~~~~~~~a~~~g~d~V~ 93 (332)
T 2z6i_A 27 DLAGAVSKAGG-LGIIGGG-----NAPKEVVKANIDKIKSLTDKPF--GVNIM---LLSP--FVEDIVDLVIEEGVKVVT 93 (332)
T ss_dssp HHHHHHHHHTS-BEEEECT-----TCCHHHHHHHHHHHHHHCCSCE--EEEEC---TTST--THHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHhCCC-cEEeCCC-----CCCHHHHHHHHHHHHHhcCCCE--EEEec---CCCC--CHHHHHHHHHHCCCCEEE
Confidence 45555666664 6666222 23556678777777753 1111 2 111 0122 588999999999999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
++.|. | .++++.+++.|+++..-+ . + ++.++...++||
T Consensus 94 ~~~g~---p----~~~i~~l~~~g~~v~~~v-----~--------------------------~----~~~a~~~~~~Ga 131 (332)
T 2z6i_A 94 TGAGN---P----SKYMERFHEAGIIVIPVV-----P--------------------------S----VALAKRMEKIGA 131 (332)
T ss_dssp ECSSC---G----GGTHHHHHHTTCEEEEEE-----S--------------------------S----HHHHHHHHHTTC
T ss_pred ECCCC---h----HHHHHHHHHcCCeEEEEe-----C--------------------------C----HHHHHHHHHcCC
Confidence 99883 3 246677777777655221 0 1 345666778999
Q ss_pred cEEEEecc--ccccCCCCccHHHHHHHHhcc
Q 022982 200 DMIMIDSD--DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 200 ~~ViiEar--GI~d~~G~~r~d~v~~ii~~l 228 (289)
|.|++++. |=... .....+++.++.+.+
T Consensus 132 D~i~v~g~~~GG~~g-~~~~~~ll~~i~~~~ 161 (332)
T 2z6i_A 132 DAVIAEGMEAGGHIG-KLTTMTLVRQVATAI 161 (332)
T ss_dssp SCEEEECTTSSEECC-SSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCCCC-CccHHHHHHHHHHhc
Confidence 99999875 21111 123346666666544
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=1.4 Score=39.83 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=35.7
Q ss_pred ChhHHHHHHHHHHhC-Cceec----CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 022982 68 PKPFIEEVVKRAHQH-DVYVS----TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124 (289)
Q Consensus 68 p~~~l~eKI~l~~~~-gV~v~----~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt 124 (289)
+.+.+.+.++-.++. ++++. ++ | ....+.++.+.|.+.|.|.|-+++.+
T Consensus 142 ~~e~~~~iv~~vr~~~~~Pv~vKi~~~-~-------~~~~~~~~a~~~~~~G~d~i~v~~~~ 195 (311)
T 1jub_A 142 DFEATEKLLKEVFTFFTKPLGVKLPPY-F-------DLVHFDIMAEILNQFPLTYVNSVNSI 195 (311)
T ss_dssp CHHHHHHHHHHHTTTCCSCEEEEECCC-C-------SHHHHHHHHHHHTTSCCCEEEECCCE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCC-C-------CHHHHHHHHHHHHHcCCcEEEecCCC
Confidence 666788888888876 55443 33 2 11256778889999999999999986
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=91.90 E-value=1.7 Score=39.57 Aligned_cols=102 Identities=16% Similarity=0.288 Sum_probs=66.9
Q ss_pred hhHHHHHHHhhc-ccccEEEecCcc-ccccChhH-----------------HHHHHHHHHhC--CceecCCcHHHHHHHh
Q 022982 40 HNVLEDIFESMG-QFVDGLKFSGGS-HSLMPKPF-----------------IEEVVKRAHQH--DVYVSTGDWAEHLIRN 98 (289)
Q Consensus 40 ~~~~~DlLe~ag-~yID~lKfg~GT-s~l~p~~~-----------------l~eKI~l~~~~--gV~v~~GtlfE~a~~q 98 (289)
+..+.+++...- .=+|++=+|.=- -.+++-.. +-+.++-.|+. ++++..=|++.-.+..
T Consensus 31 ~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~ 110 (267)
T 3vnd_A 31 PELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFAN 110 (267)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHh
Confidence 455555555443 348999998211 11222222 22344444543 3443322677777777
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022982 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
| +++|++.|++.|+|.+=|. ++|.++..++++.++++|+++.+
T Consensus 111 g---~e~f~~~~~~aGvdgvii~----Dlp~ee~~~~~~~~~~~gl~~i~ 153 (267)
T 3vnd_A 111 G---IDEFYTKAQAAGVDSVLIA----DVPVEESAPFSKAAKAHGIAPIF 153 (267)
T ss_dssp C---HHHHHHHHHHHTCCEEEET----TSCGGGCHHHHHHHHHTTCEEEC
T ss_pred h---HHHHHHHHHHcCCCEEEeC----CCCHhhHHHHHHHHHHcCCeEEE
Confidence 5 8999999999999999996 56778888999999999988655
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=91.78 E-value=2.4 Score=38.81 Aligned_cols=111 Identities=11% Similarity=0.107 Sum_probs=86.1
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
+.+++..|-|+|=+..- .++.++..++++.+++.|+.++.|+.-
T Consensus 135 i~ea~~~GAD~VlLi~a--~L~~~~l~~l~~~a~~lGl~~lvevh~---------------------------------- 178 (272)
T 3tsm_A 135 VYEARSWGADCILIIMA--SVDDDLAKELEDTAFALGMDALIEVHD---------------------------------- 178 (272)
T ss_dssp HHHHHHTTCSEEEEETT--TSCHHHHHHHHHHHHHTTCEEEEEECS----------------------------------
T ss_pred HHHHHHcCCCEEEEccc--ccCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 66789999999998766 457888899999999999998887742
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCCccc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPKVNL 256 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e-klifEAP~-k~qQ~~~I~~fG~~VNL 256 (289)
.+++++.+++||++|=+-.|.+..- .+.-+...+++..++.+ -+|-|.=- ...+...+...|.+-=|
T Consensus 179 -~eEl~~A~~~ga~iIGinnr~l~t~--~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvL 247 (272)
T 3tsm_A 179 -EAEMERALKLSSRLLGVNNRNLRSF--EVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFL 247 (272)
T ss_dssp -HHHHHHHTTSCCSEEEEECBCTTTC--CBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEE
T ss_pred -HHHHHHHHhcCCCEEEECCCCCccC--CCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 3566788899999999988865332 34566777888888754 46777764 56788888888887655
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=91.72 E-value=3.9 Score=37.65 Aligned_cols=133 Identities=18% Similarity=0.206 Sum_probs=81.9
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCC-ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (289)
.+......+| ++.++= + ..++.+.+++.|+.+++.- .++--+.+. ... .++++++.+.+.|.+.|.+
T Consensus 41 ~la~av~~aG-glG~i~----~-~~~~~~~l~~~i~~i~~~~~~p~gVnl~~----~~~--~~~~~~~~~~~~g~d~V~l 108 (326)
T 3bo9_A 41 TLAAAVSEAG-GLGIIG----S-GAMKPDDLRKAISELRQKTDKPFGVNIIL----VSP--WADDLVKVCIEEKVPVVTF 108 (326)
T ss_dssp HHHHHHHHTT-SBEEEE----C-TTCCHHHHHHHHHHHHTTCSSCEEEEEET----TST--THHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHhCC-CcEEeC----C-CCCCHHHHHHHHHHHHHhcCCCEEEEEec----cCC--CHHHHHHHHHHCCCCEEEE
Confidence 4555556666 666662 1 2246677888888888752 222112111 122 6789999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
+-|. | .++++.+++.|.++.+.+. + .+.+++..++|||
T Consensus 109 ~~g~---p----~~~~~~l~~~g~~v~~~v~-------------------------------s----~~~a~~a~~~GaD 146 (326)
T 3bo9_A 109 GAGN---P----TKYIRELKENGTKVIPVVA-------------------------------S----DSLARMVERAGAD 146 (326)
T ss_dssp ESSC---C----HHHHHHHHHTTCEEEEEES-------------------------------S----HHHHHHHHHTTCS
T ss_pred CCCC---c----HHHHHHHHHcCCcEEEEcC-------------------------------C----HHHHHHHHHcCCC
Confidence 8773 4 2567788888777654210 1 3556667899999
Q ss_pred EEEEeccccccCCC-CccHHHHHHHHhcc
Q 022982 201 MIMIDSDDVCKHAD-SLRADIIAKVIGRL 228 (289)
Q Consensus 201 ~ViiEarGI~d~~G-~~r~d~v~~ii~~l 228 (289)
.|++++.+---..| ....+++.++.+.+
T Consensus 147 ~i~v~g~~~GG~~G~~~~~~ll~~i~~~~ 175 (326)
T 3bo9_A 147 AVIAEGMESGGHIGEVTTFVLVNKVSRSV 175 (326)
T ss_dssp CEEEECTTSSEECCSSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCccCCCccHHHHHHHHHHHc
Confidence 99999852100112 23445666666544
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.37 Score=44.99 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc--cc
Q 022982 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--KP 148 (289)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v--~~ 148 (289)
.+++-|+.++++|..|..|- |.+-.-+|+.+-+..+.+.+.|.+.|-+.|-.--+.+.+-.++|+.+++. +.- .-
T Consensus 123 ~~~~~v~~a~~~g~~v~f~~--~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~~~ 199 (325)
T 3eeg_A 123 MAVAAVKQAKKVVHEVEFFC--EDAGRADQAFLARMVEAVIEAGADVVNIPDTTGYMLPWQYGERIKYLMDN-VSNIDKA 199 (325)
T ss_dssp TTHHHHHHHHTTSSEEEEEE--ETGGGSCHHHHHHHHHHHHHHTCSEEECCBSSSCCCHHHHHHHHHHHHHH-CSCGGGS
T ss_pred HHHHHHHHHHHCCCEEEEEc--cccccchHHHHHHHHHHHHhcCCCEEEecCccCCcCHHHHHHHHHHHHHh-CCCCCce
Confidence 45688999999999887652 22233455567788888889999999999999999999999999999884 110 01
Q ss_pred eeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 022982 149 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 149 E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~ 226 (289)
.+++.+. . |...-+-.+...++|||+.| ++- |+=...||.-++.+-..+.
T Consensus 200 ~i~~H~H-n-------------------------d~GlA~AN~laA~~aGa~~v--d~tv~GlGer~GN~~lE~vv~~L~ 251 (325)
T 3eeg_A 200 ILSAHCH-N-------------------------DLGLATANSLAALQNGARQV--ECTINGIGERAGNTALEEVVMAME 251 (325)
T ss_dssp EEEECBC-C-------------------------TTSCHHHHHHHHHHHTCCEE--EEBGGGCCSTTCCCBHHHHHHHHH
T ss_pred EEEEEeC-C-------------------------CCCHHHHHHHHHHHhCCCEE--EEecccccccccchhHHHHHHHHH
Confidence 3444321 1 12223677888999999974 664 8888999999887766654
|
| >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A | Back alignment and structure |
|---|
Probab=91.64 E-value=0.38 Score=41.26 Aligned_cols=140 Identities=17% Similarity=0.277 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHcCCCEEEec-CCccc--CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 022982 102 AFKEYVEDCKQVGFDTIELN-VGSLE--IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS-dGti~--i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 178 (289)
.+++.++.++++||+.||+. ..... ++..+..++.+.+++.|+++.+ ++.-.+.. + .|++ .+
T Consensus 15 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~~---~-~~~~--------~~-- 79 (278)
T 1i60_A 15 NLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLA-LNALVFFN---N-RDEK--------GH-- 79 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEEE-EEEEECCS---S-CCHH--------HH--
T ss_pred CHHHHHHHHHHhCCCEEEEccHHHHHHHhccCCHHHHHHHHHHcCCCeee-eccccccc---c-CCHH--------HH--
Confidence 68899999999999999998 54331 2335566788888999998754 43321111 0 1110 00
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccH-------HH---HHHHHhccCCCceEEecC--------Cc
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA-------DI---IAKVIGRLGLEKTMFEAT--------NP 240 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~-------d~---v~~ii~~l~~eklifEAP--------~k 240 (289)
....+.+.+.++..-+.||..|.+=+ |.... +.-+. +. +.++++..|+ +|.+|.- +.
T Consensus 80 --~~~~~~~~~~i~~a~~lG~~~v~~~~-g~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lEn~~~~~~~~~~~ 154 (278)
T 1i60_A 80 --NEIITEFKGMMETCKTLGVKYVVAVP-LVTEQ-KIVKEEIKKSSVDVLTELSDIAEPYGV-KIALEFVGHPQCTVNTF 154 (278)
T ss_dssp --HHHHHHHHHHHHHHHHHTCCEEEEEC-CBCSS-CCCHHHHHHHHHHHHHHHHHHHGGGTC-EEEEECCCCTTBSSCSH
T ss_pred --HHHHHHHHHHHHHHHHcCCCEEEEec-CCCCC-CCCHHHHHHHHHHHHHHHHHHHHhcCC-EEEEEecCCccchhcCH
Confidence 01244555566666678999998843 21111 11011 11 2223333454 5777754 34
Q ss_pred hhHHHHHHHhCC-CcccccCCC
Q 022982 241 RTSEWFIRRYGP-KVNLFVDHS 261 (289)
Q Consensus 241 ~qQ~~~I~~fG~-~VNLgI~~~ 261 (289)
.+-..+++..|+ +|-+.+|..
T Consensus 155 ~~~~~l~~~~~~~~~g~~~D~~ 176 (278)
T 1i60_A 155 EQAYEIVNTVNRDNVGLVLDSF 176 (278)
T ss_dssp HHHHHHHHHHCCTTEEEEEEHH
T ss_pred HHHHHHHHHhCCCCeeEEEEeE
Confidence 567788999985 554434443
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=91.61 E-value=2.1 Score=38.34 Aligned_cols=112 Identities=16% Similarity=0.212 Sum_probs=72.5
Q ss_pred ceeEecCCCCCCCchhHHHHHHHhhccc-ccEEEecCccc-cccChhHHH-----------------HHHHHHHhC--Cc
Q 022982 26 VTEMRSPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSH-SLMPKPFIE-----------------EVVKRAHQH--DV 84 (289)
Q Consensus 26 lT~V~DkGl~~~~g~~~~~DlLe~ag~y-ID~lKfg~GTs-~l~p~~~l~-----------------eKI~l~~~~--gV 84 (289)
+++|. +|++ .+....++++..-+. +|.+.+|.=-+ .+++-..++ +-++-.+++ ++
T Consensus 20 i~~i~-~g~p---~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~ 95 (262)
T 2ekc_A 20 VSYLM-VGYP---DYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDI 95 (262)
T ss_dssp EEEEE-TTSS---CHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTS
T ss_pred EEEec-CCCC---ChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC
Confidence 44443 6663 445566666655555 99999986322 122222333 334444544 45
Q ss_pred eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022982 85 YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 85 ~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
++..=|..-.++..| +++|++.|++.|+|.+=+. ++|.++-.++++.++++|+.+.+
T Consensus 96 Pi~~m~y~n~v~~~g---~~~f~~~~~~aG~dgvii~----dl~~ee~~~~~~~~~~~gl~~i~ 152 (262)
T 2ekc_A 96 PFLLMTYYNPIFRIG---LEKFCRLSREKGIDGFIVP----DLPPEEAEELKAVMKKYVLSFVP 152 (262)
T ss_dssp CEEEECCHHHHHHHC---HHHHHHHHHHTTCCEEECT----TCCHHHHHHHHHHHHHTTCEECC
T ss_pred CEEEEecCcHHHHhh---HHHHHHHHHHcCCCEEEEC----CCCHHHHHHHHHHHHHcCCcEEE
Confidence 443214445555554 7999999999999988886 56778889999999999988654
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=91.39 E-value=1.1 Score=41.38 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=106.7
Q ss_pred CCceecCCcHH--HHHHHhCCchHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeec
Q 022982 82 HDVYVSTGDWA--EHLIRNGPSAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMF 154 (289)
Q Consensus 82 ~gV~v~~Gtlf--E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~ 154 (289)
.||.+..=|.| +- -.=+.+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+
T Consensus 13 ~Gv~~a~vTPF~~~d-g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~g-rvpViaGv-- 88 (314)
T 3d0c_A 13 STISGINIVPFLEGT-REIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNG-RATVVAGI-- 88 (314)
T ss_dssp SSEEECCCCCBCTTT-CCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEEE--
T ss_pred CceEEeeeccccCCC-CCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCC-CCeEEecC--
Confidence 46655555544 21 0112236888999999999999987543 4489999999999999873 1 11111122
Q ss_pred CCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------cc
Q 022982 155 NKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DV 209 (289)
Q Consensus 155 ~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI 209 (289)
| . +..+.|++++..-++|||.|++=.- -|
T Consensus 89 -----g--------------------~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiil 142 (314)
T 3d0c_A 89 -----G--------------------Y-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSII 142 (314)
T ss_dssp -----C--------------------S-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEE
T ss_pred -----C--------------------c-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 1 1 3677899999999999999998652 26
Q ss_pred ccCCCCccHHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCC--CcccccCCCCchhhhhhhcccCC
Q 022982 210 CKHADSLRADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGP--KVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 210 ~d~~G~~r~d~v~~ii~~l~~eklif--EA-P~k~qQ~~~I~~fG~--~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
|+..|.+..+.+.++++ ..+|+- |+ .+-.+...+++..++ ++.+.--.+++..+++|..|--|
T Consensus 143 Yn~tg~l~~~~~~~La~---~pnIvgiKdssgd~~~~~~~~~~~~~~~~f~v~~G~d~~~~~~~l~~G~~G 210 (314)
T 3d0c_A 143 YFKDAHLSDDVIKELAP---LDKLVGIKYAINDIQRVTQVMRAVPKSSNVAFICGTAEKWAPFFYHAGAVG 210 (314)
T ss_dssp EECCTTSCTHHHHHHTT---CTTEEEEEECCCCHHHHHHHHHHSCGGGCCEEEETTHHHHHHHHHHHTCCE
T ss_pred EeCCCCcCHHHHHHHHc---CCCEEEEEeCCCCHHHHHHHHHhcCCCCCEEEEEeCcHHHHHHHHHcCCCE
Confidence 77556566788888863 345542 55 466677778888876 66664334443788899877444
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.37 E-value=1.7 Score=40.07 Aligned_cols=120 Identities=19% Similarity=0.208 Sum_probs=80.0
Q ss_pred HHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 022982 105 EYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
+-.+..-+.|..+|-|=|+.. -+|.++.++-|+.+++.+- -+.|-++- ..|. .
T Consensus 101 ~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~--~~~~~i~a-------Rtda-a------- 163 (287)
T 3b8i_A 101 RTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARV--DPALTIIA-------RTNA-E------- 163 (287)
T ss_dssp HHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCC--STTSEEEE-------EEET-T-------
T ss_pred HHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCC--CCCcEEEE-------echh-h-------
Confidence 334444458999999999864 3788899999999999865 23344421 1111 0
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhCCC
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYGPK 253 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP-~k~qQ~~~I~~fG~~ 253 (289)
....++.|++++...+||||.|.+|+- ...+++.+|.+.++.--+|.|-- .+..-..=+...|
T Consensus 164 ------~~gl~~ai~Ra~ay~eAGAd~i~~e~~--------~~~~~~~~i~~~~~~P~ii~~~g~~~~~~~~eL~~lG-- 227 (287)
T 3b8i_A 164 ------LIDVDAVIQRTLAYQEAGADGICLVGV--------RDFAHLEAIAEHLHIPLMLVTYGNPQLRDDARLARLG-- 227 (287)
T ss_dssp ------TSCHHHHHHHHHHHHHTTCSEEEEECC--------CSHHHHHHHHTTCCSCEEEECTTCGGGCCHHHHHHTT--
T ss_pred ------hcCHHHHHHHHHHHHHcCCCEEEecCC--------CCHHHHHHHHHhCCCCEEEeCCCCCCCCCHHHHHHcC--
Confidence 124789999999999999999999963 23688999999888444477741 1222223355566
Q ss_pred cccc
Q 022982 254 VNLF 257 (289)
Q Consensus 254 VNLg 257 (289)
||+-
T Consensus 228 v~~v 231 (287)
T 3b8i_A 228 VRVV 231 (287)
T ss_dssp EEEE
T ss_pred CcEE
Confidence 5554
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=91.28 E-value=0.83 Score=44.47 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=98.1
Q ss_pred hHHHHHHHhhcccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHH
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~ 109 (289)
..++..+++- +|.+-+-..||-.+.+ +.+.+-++.++++|+.|..+ +|.++..+++.+-+.++.
T Consensus 114 ~di~~A~~aG---~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~--~eda~r~d~~~~~~v~~~ 188 (423)
T 3ivs_A 114 DDARVAVETG---VDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFS--SEDSFRSDLVDLLSLYKA 188 (423)
T ss_dssp HHHHHHHHTT---CSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEE--EESGGGSCHHHHHHHHHH
T ss_pred hhHHHHHHcC---CCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEE--EccCcCCCHHHHHHHHHH
Confidence 3455555543 5566666666544322 34556789999999988754 233444555566777788
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
+.+.|.+.|-+.|-.--+.+.+-.++|+.+++. + ...+++.+. . | ...-+-
T Consensus 189 ~~~~Ga~~i~l~DTvG~~~P~~v~~lv~~l~~~-~--~~~i~~H~H-n------d-------------------~GlAvA 239 (423)
T 3ivs_A 189 VDKIGVNRVGIADTVGCATPRQVYDLIRTLRGV-V--SCDIECHFH-N------D-------------------TGMAIA 239 (423)
T ss_dssp HHHHCCSEEEEEETTSCCCHHHHHHHHHHHHHH-C--SSEEEEEEB-C------T-------------------TSCHHH
T ss_pred HHHhCCCccccCCccCcCCHHHHHHHHHHHHhh-c--CCeEEEEEC-C------C-------------------CchHHH
Confidence 889999999999999888899989999999874 2 224555331 1 1 222367
Q ss_pred HHHHHHHccCcEEEEecc--ccccCCCCccHHHHH
Q 022982 190 RAERCLEAGADMIMIDSD--DVCKHADSLRADIIA 222 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~ 222 (289)
.+...++|||+ .|++- |+=+..||...+.+-
T Consensus 240 N~laAv~aGa~--~vd~ti~GlGERaGNa~Le~vv 272 (423)
T 3ivs_A 240 NAYCALEAGAT--HIDTSILGIGERNGITPLGALL 272 (423)
T ss_dssp HHHHHHHTTCC--EEEEBGGGCSSTTCBCBHHHHH
T ss_pred HHHHHHHhCCC--EEEEecccccCcccchhHHHHH
Confidence 77889999999 55664 999999998876553
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=91.20 E-value=3.1 Score=38.13 Aligned_cols=130 Identities=20% Similarity=0.209 Sum_probs=96.2
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
+++| +.+++.+|=|+|=+-.. -++.++..++++.+++.||.|+-|+.-
T Consensus 114 id~yQI~eAr~~GADaILLI~a--~L~~~~l~~l~~~A~~lGl~~LvEVh~----------------------------- 162 (258)
T 4a29_A 114 VKESQIDDAYNLGADTVLLIVK--ILTERELESLLEYARSYGMEPLILIND----------------------------- 162 (258)
T ss_dssp CSHHHHHHHHHHTCSEEEEEGG--GSCHHHHHHHHHHHHHTTCCCEEEESS-----------------------------
T ss_pred ccHHHHHHHHHcCCCeeehHHh--hcCHHHHHHHHHHHHHHhHHHHHhcch-----------------------------
Confidence 5555 67899999999976543 367888899999999999999998754
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecC-CchhHHHHHHHhCCCccc-c-
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT-NPRTSEWFIRRYGPKVNL-F- 257 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ekl-ifEAP-~k~qQ~~~I~~fG~~VNL-g- 257 (289)
-+++++.+++||+.|-|..|.+- +-++.-+.-.+++..+|.+.+ |-|.= ....+...++..|.+-=| |
T Consensus 163 ------~~El~rAl~~~a~iIGINNRnL~--tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGe 234 (258)
T 4a29_A 163 ------ENDLDIALRIGARFIGIMSRDFE--TGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISS 234 (258)
T ss_dssp ------HHHHHHHHHTTCSEEEECSBCTT--TCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECH
T ss_pred ------HHHHHHHhcCCCcEEEEeCCCcc--ccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECH
Confidence 35677889999999999888762 345567778889999987766 55665 345678889999988666 4
Q ss_pred --cCCCCchhhhhhhccc
Q 022982 258 --VDHSQVMDLECLRGRN 273 (289)
Q Consensus 258 --I~~~eVl~LE~LR~g~ 273 (289)
+...| ++..|..|.
T Consensus 235 almr~~d--~~~~Li~G~ 250 (258)
T 4a29_A 235 SLMRNPE--KIKELIEGS 250 (258)
T ss_dssp HHHHCTT--HHHHHHC--
T ss_pred HHhCCCc--HHHHHHcCc
Confidence 33333 445555444
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=91.17 E-value=6.1 Score=36.37 Aligned_cols=145 Identities=12% Similarity=0.119 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+ |
T Consensus 44 ~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGv-------g---------------- 100 (314)
T 3qze_A 44 DSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGT-------G---------------- 100 (314)
T ss_dssp HHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEEC-------C----------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC-------C----------------
Confidence 368888999999999999775333 479999999999999884 1011111122 1
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~----~G~~r~d~v~~ii~~ 227 (289)
..+..+.|++++..-++|||.|++=.- -||+. .-++..+.+.++++
T Consensus 101 ----~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~- 175 (314)
T 3qze_A 101 ----ANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSK- 175 (314)
T ss_dssp ----CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHT-
T ss_pred ----CcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc-
Confidence 114788899999999999999999762 15664 34677888888873
Q ss_pred cCCCceE--Eec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCCC
Q 022982 228 LGLEKTM--FEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 228 l~~ekli--fEA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G~ 276 (289)
.| +|+ =|+ ++-.+...+++..+++..+.-- +|-+.+++|..|--|-
T Consensus 176 ~p--nIvgiKdssgd~~~~~~~~~~~~~~f~v~~G-~d~~~l~~l~~Ga~G~ 224 (314)
T 3qze_A 176 VP--NIIGIKEATGDLQRAKEVIERVGKDFLVYSG-DDATAVELMLLGGKGN 224 (314)
T ss_dssp ST--TEEEEEECSCCHHHHHHHHHHSCTTSEEEES-CGGGHHHHHHTTCCEE
T ss_pred CC--CEEEEEcCCCCHHHHHHHHHHcCCCeEEEec-ChHHHHHHHHCCCCEE
Confidence 43 442 244 5667778888889988777533 3445789999775543
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=91.14 E-value=2.6 Score=38.49 Aligned_cols=143 Identities=19% Similarity=0.182 Sum_probs=97.3
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
+.+.++++++-+-|.+.|=+. ||. .|+.++|.++++.+.+. +=++.-=+|+-
T Consensus 25 ~~l~~lv~~li~~Gv~gl~v~-GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg---------------------- 81 (300)
T 3eb2_A 25 DVMGRLCDDLIQAGVHGLTPL-GSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVA---------------------- 81 (300)
T ss_dssp HHHHHHHHHHHHTTCSCBBTT-SGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEE----------------------
T ss_pred HHHHHHHHHHHHcCCCEEEEC-ccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCC----------------------
Confidence 367888888889999999554 443 69999999999999884 11111112330
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccCC----CCccHHHHHHHHh
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVIG 226 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~~----G~~r~d~v~~ii~ 226 (289)
..+..+.|++++..-++|||.|++=.- -||+.= -++..+.+.++.
T Consensus 82 -----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La- 155 (300)
T 3eb2_A 82 -----STSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLA- 155 (300)
T ss_dssp -----ESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHH-
T ss_pred -----CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHH-
Confidence 114788899999999999999999652 157642 257778888885
Q ss_pred ccCCCceE--Eec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 227 RLGLEKTM--FEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 227 ~l~~ekli--fEA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
+.| +|+ =|+ .+-.+...+++..++++.+..-.++ +.+++|..|--|
T Consensus 156 ~~p--nIvgiKdssgd~~~~~~~~~~~~~~f~v~~G~d~-~~~~~l~~G~~G 204 (300)
T 3eb2_A 156 EHP--RIRYIKDASTNTGRLLSIINRCGDALQVFSASAH-IPAAVMLIGGVG 204 (300)
T ss_dssp TST--TEEEEEECSSBHHHHHHHHHHHGGGSEEEECTTS-CHHHHHHTTCCE
T ss_pred cCC--CEEEEEcCCCCHHHHHHHHHHcCCCeEEEeCcHH-HHHHHHhCCCCE
Confidence 343 442 244 4566777788888887777654444 448888877444
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=91.00 E-value=0.18 Score=46.94 Aligned_cols=119 Identities=18% Similarity=0.285 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----CChhHHHHHHHHHH
Q 022982 71 FIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----IPEETLLRYVRLVK 140 (289)
Q Consensus 71 ~l~eKI~l~~~~-----gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----i~~~~r~~lI~~~~ 140 (289)
.+.|.++-.++. +|++++..|.+--+ ..+...++.+.+.+.|.++|+||+|+.. .++.....+++.++
T Consensus 196 ~~~eiv~avr~~v~~pv~vris~~~~~~~g~--~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir 273 (338)
T 1z41_A 196 FLREIIDEVKQVWDGPLFVRVSASDYTDKGL--DIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIR 273 (338)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEECCCCSTTSC--CHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEecCcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHH
Confidence 355666665543 33555644433100 0113556777888899999999999753 22323356777777
Q ss_pred HcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc-CcEEEEeccccccCCCCccHH
Q 022982 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHADSLRAD 219 (289)
Q Consensus 141 ~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG-A~~ViiEarGI~d~~G~~r~d 219 (289)
+. +++. .--+| .+.+ .+.+++.|++| ||.|++ +|.+..+ .+
T Consensus 274 ~~-------~~iP--Vi~~G--------gi~s---------------~~~a~~~l~~G~aD~V~i-GR~~i~n-----Pd 315 (338)
T 1z41_A 274 EQ-------ADMA--TGAVG--------MITD---------------GSMAEEILQNGRADLIFI-GRELLRD-----PF 315 (338)
T ss_dssp HH-------HCCE--EEECS--------SCCS---------------HHHHHHHHHTTSCSEEEE-CHHHHHC-----TT
T ss_pred HH-------CCCC--EEEEC--------CCCC---------------HHHHHHHHHcCCceEEee-cHHHHhC-----ch
Confidence 63 2211 11011 1111 46777888999 999988 5655432 56
Q ss_pred HHHHHHhccC
Q 022982 220 IIAKVIGRLG 229 (289)
Q Consensus 220 ~v~~ii~~l~ 229 (289)
++.++.+.++
T Consensus 316 l~~ki~~~~~ 325 (338)
T 1z41_A 316 FARTAAKQLN 325 (338)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHcCCC
Confidence 7888887776
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=90.91 E-value=3.2 Score=37.88 Aligned_cols=130 Identities=11% Similarity=0.137 Sum_probs=87.8
Q ss_pred chhHHHHHHHhh-cccccEEEecCcccccc--ChhHHHHHHHHHHh-CCceec--CCcHHHHHHHhCCchHHHHHHHHHH
Q 022982 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLM--PKPFIEEVVKRAHQ-HDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 39 g~~~~~DlLe~a-g~yID~lKfg~GTs~l~--p~~~l~eKI~l~~~-~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
.+.++.+.++.+ ..-+.-+-|.+|....+ +.+.+.+.++..++ +++.++ +|. .-++.++.+++
T Consensus 92 s~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~~~~~~~l~~~ik~~~~i~i~~s~g~-----------~~~e~l~~L~~ 160 (350)
T 3t7v_A 92 TMEEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVELVQIVKEELGLPIMISPGL-----------MDNATLLKARE 160 (350)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHSTHHHHHHHHHHHHHHCSCEEEECSS-----------CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeeCCCCccccCHHHHHHHHHHHHhhcCceEEEeCCC-----------CCHHHHHHHHH
Confidence 344444444433 33367777777764433 45678888888875 466544 231 34677888899
Q ss_pred cCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 113 VGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 113 lGF~~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
.|++.+-++--+. ..+.+++.+.++.+++.|+++.+ +.-.+.. +
T Consensus 161 aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~--~~i~Glg------------------------e 214 (350)
T 3t7v_A 161 KGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVED--GILTGVG------------------------N 214 (350)
T ss_dssp TTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEE--EEEESSS------------------------C
T ss_pred cCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEcc--ceEeecC------------------------C
Confidence 9999988766554 36788999999999999997544 4433321 1
Q ss_pred cHHHHHHHHHHHHHccCcEEEEe
Q 022982 183 DVDLLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiE 205 (289)
+.+++++.++.-.+.+.+.|-+=
T Consensus 215 t~e~~~~~l~~l~~l~~~~v~~~ 237 (350)
T 3t7v_A 215 DIESTILSLRGMSTNDPDMVRVM 237 (350)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEec
Confidence 47778888888888999977653
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=90.84 E-value=0.66 Score=42.86 Aligned_cols=94 Identities=21% Similarity=0.315 Sum_probs=62.7
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
.+. |.++|-|-||. ...+.|+.+.++|.+|.-.+|.+.. + ...++.+....+ .....+++|+
T Consensus 116 ~ka-Ga~aVklEdg~------~~~~~i~~l~~~GIpv~gHlgltPq-~------~~~~gg~~vqgr----t~~~a~~~i~ 177 (275)
T 3vav_A 116 MRA-GAQMVKFEGGE------WLAETVRFLVERAVPVCAHVGLTPQ-S------VHAFGGFKVQGK----TEAGAAQLLR 177 (275)
T ss_dssp HHT-TCSEEEEECCG------GGHHHHHHHHHTTCCEEEEEESCGG-G------HHHHC---CCCC----SHHHHHHHHH
T ss_pred HHc-CCCEEEECCch------hHHHHHHHHHHCCCCEEEecCCCce-E------EeccCCeEEEcC----CHHHHHHHHH
Confidence 344 99999999994 4477899999999999988887421 1 111111111001 0113689999
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCC
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
.++..-+|||+.|.+|+= .++++.+|.+++++
T Consensus 178 rA~a~~eAGA~~ivlE~v---------p~~~a~~It~~l~i 209 (275)
T 3vav_A 178 DARAVEEAGAQLIVLEAV---------PTLVAAEVTRELSI 209 (275)
T ss_dssp HHHHHHHHTCSEEEEESC---------CHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCCEEEecCC---------CHHHHHHHHHhCCC
Confidence 999999999999999972 33455666665553
|
| >2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* | Back alignment and structure |
|---|
Probab=90.74 E-value=1.2 Score=38.62 Aligned_cols=146 Identities=13% Similarity=0.191 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
.+++.++.++++||+.||+..... ..+..+..++.+.+++.|+++..-.+.-... ... ..|++. +
T Consensus 18 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~-~l~-~~d~~~--------r---- 83 (290)
T 2qul_A 18 DFPATAKRIAGLGFDLMEISLGEFHNLSDAKKRELKAVADDLGLTVMCCIGLKSEY-DFA-SPDKSV--------R---- 83 (290)
T ss_dssp CHHHHHHHHHHTTCSEEEEESTTGGGSCHHHHHHHHHHHHHHTCEEEEEEEECGGG-CTT-CSCHHH--------H----
T ss_pred cHHHHHHHHHHhCCCEEEEecCCccccchhhHHHHHHHHHHcCCceEEecCCCCCC-CCC-CCCHHH--------H----
Confidence 689999999999999999986542 3344677788999999999987632210000 010 011100 0
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEec---ccc--ccCCCCccHHHHHHH----------HhccCCCceEEecC-------
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDS---DDV--CKHADSLRADIIAKV----------IGRLGLEKTMFEAT------- 238 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI--~d~~G~~r~d~v~~i----------i~~l~~eklifEAP------- 238 (289)
....+.+.+.++..-+.||..|.+-. .|. +.. +.-+.+..+.+ ++..|+ +|.+|.-
T Consensus 84 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lEn~~~~~~~~ 161 (290)
T 2qul_A 84 DAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLD-MKDKRPYVDRAIESVRRVIKVAEDYGI-IYALEVVNRFEQWL 161 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTT-CCCCHHHHHHHHHHHHTTHHHHHHHTC-EEEEECCCTTTCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCC-cccHHHHHHHHHHHHHHHHHHHHHcCC-EEEEEeCccccccc
Confidence 01234555555666678999998532 122 111 11222222222 223344 6888842
Q ss_pred --CchhHHHHHHHhCC-CcccccCCCCc
Q 022982 239 --NPRTSEWFIRRYGP-KVNLFVDHSQV 263 (289)
Q Consensus 239 --~k~qQ~~~I~~fG~-~VNLgI~~~eV 263 (289)
+..+-..+++..|+ +|-+..|..+.
T Consensus 162 ~~~~~~~~~l~~~~~~~~~g~~~D~~h~ 189 (290)
T 2qul_A 162 CNDAKEAIAFADAVDSPACKVQLDTFHM 189 (290)
T ss_dssp CCSHHHHHHHHHHHCCTTEEEEEEHHHH
T ss_pred cCCHHHHHHHHHHcCCCCEEEEEEchhh
Confidence 34566788999984 55443554433
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=90.53 E-value=1.7 Score=39.66 Aligned_cols=138 Identities=16% Similarity=0.156 Sum_probs=80.5
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (289)
.+......+| ++.++= .++ +.+.+.+++.++.++++ +.++--+.+....+ .+..++++++.|.+.|.+.|.+
T Consensus 30 ~la~av~~aG-glG~i~--~~~--~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~--~~~~~~~~~~~~~~~g~d~V~~ 102 (328)
T 2gjl_A 30 EMAAAVANAG-GLATLS--ALT--QPSPEALAAEIARCRELTDRPFGVNLTLLPTQ--KPVPYAEYRAAIIEAGIRVVET 102 (328)
T ss_dssp HHHHHHHHTT-SBCEEE--TTT--SSSHHHHHHHHHHHHHHCSSCCEEEEEECCCS--SCCCHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCC-CeEEeC--CCC--CCCHHHHHHHHHHHHHhcCCCeEEEEeccccc--cCccHHHHHHHHHhcCCCEEEE
Confidence 4555555666 566662 221 33356677777777653 21111111110000 1236899999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
+-|. | .++++.+++.|.++.+. + . + .+.+++..++|||
T Consensus 103 ~~g~---p----~~~~~~l~~~gi~vi~~--v---~--------------------------t----~~~a~~~~~~GaD 140 (328)
T 2gjl_A 103 AGND---P----GEHIAEFRRHGVKVIHK--C---T--------------------------A----VRHALKAERLGVD 140 (328)
T ss_dssp EESC---C----HHHHHHHHHTTCEEEEE--E---S--------------------------S----HHHHHHHHHTTCS
T ss_pred cCCC---c----HHHHHHHHHcCCCEEee--C---C--------------------------C----HHHHHHHHHcCCC
Confidence 8763 4 35778888878776521 2 0 1 3456678899999
Q ss_pred EEEEeccc---cccCCCCccHHHHHHHHhcc
Q 022982 201 MIMIDSDD---VCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 201 ~ViiEarG---I~d~~G~~r~d~v~~ii~~l 228 (289)
.|++++.+ -.........+++.++.+.+
T Consensus 141 ~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~ 171 (328)
T 2gjl_A 141 AVSIDGFECAGHPGEDDIPGLVLLPAAANRL 171 (328)
T ss_dssp EEEEECTTCSBCCCSSCCCHHHHHHHHHTTC
T ss_pred EEEEECCCCCcCCCCccccHHHHHHHHHHhc
Confidence 99998752 11111123456677776544
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=90.51 E-value=0.78 Score=38.77 Aligned_cols=125 Identities=10% Similarity=0.119 Sum_probs=72.5
Q ss_pred chhH-HHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 39 SHNV-LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 39 g~~~-~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
++++ .+.+.+.-+ |++=+.. ...++.+++-++.++++|+.+...- -+|....+.++.+.+.|.|.
T Consensus 65 ~~~~~~~~~~~~Ga---d~v~v~~----~~~~~~~~~~~~~~~~~g~~~~v~~-------~~~~t~~~~~~~~~~~g~d~ 130 (211)
T 3f4w_A 65 GGHFESQLLFDAGA---DYVTVLG----VTDVLTIQSCIRAAKEAGKQVVVDM-------ICVDDLPARVRLLEEAGADM 130 (211)
T ss_dssp CHHHHHHHHHHTTC---SEEEEET----TSCHHHHHHHHHHHHHHTCEEEEEC-------TTCSSHHHHHHHHHHHTCCE
T ss_pred chHHHHHHHHhcCC---CEEEEeC----CCChhHHHHHHHHHHHcCCeEEEEe-------cCCCCHHHHHHHHHHcCCCE
Confidence 4445 555555444 5555432 2234668899999999998654210 01223455667778889999
Q ss_pred EEecCCccc--CChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHH
Q 022982 118 IELNVGSLE--IPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 193 (289)
Q Consensus 118 IEISdGti~--i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~ 193 (289)
|=++.|+-. .+.. -.+.++++++. ...+....|+. .+.++.
T Consensus 131 i~v~~g~~g~~~~~~-~~~~i~~l~~~~~~~~i~~~gGI~----------------------------------~~~~~~ 175 (211)
T 3f4w_A 131 LAVHTGTDQQAAGRK-PIDDLITMLKVRRKARIAVAGGIS----------------------------------SQTVKD 175 (211)
T ss_dssp EEEECCHHHHHTTCC-SHHHHHHHHHHCSSCEEEEESSCC----------------------------------TTTHHH
T ss_pred EEEcCCCcccccCCC-CHHHHHHHHHHcCCCcEEEECCCC----------------------------------HHHHHH
Confidence 988776431 1111 13456666653 34444444441 134555
Q ss_pred HHHccCcEEEEeccccccCC
Q 022982 194 CLEAGADMIMIDSDDVCKHA 213 (289)
Q Consensus 194 dLeAGA~~ViiEarGI~d~~ 213 (289)
.+++||+.|++= +.|+++.
T Consensus 176 ~~~~Gad~vvvG-sai~~~~ 194 (211)
T 3f4w_A 176 YALLGPDVVIVG-SAITHAA 194 (211)
T ss_dssp HHTTCCSEEEEC-HHHHTCS
T ss_pred HHHcCCCEEEEC-HHHcCCC
Confidence 678999999884 5687764
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=90.46 E-value=0.9 Score=41.36 Aligned_cols=144 Identities=10% Similarity=0.078 Sum_probs=88.8
Q ss_pred HHHHHhhcccccEEEecCccccc-cC--hhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022982 44 EDIFESMGQFVDGLKFSGGSHSL-MP--KPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (289)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GTs~l-~p--~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (289)
-+.|..+| ||.+=+||+.+.- .| .+ ..+.++.+++. |+.+. .|. .+ .+-++.+.+.|.+.|-
T Consensus 33 ~~~L~~~G--v~~IE~g~~~~~~~~p~~~d-~~~~~~~~~~~~~~~~~--~l~-----~~----~~~i~~a~~ag~~~v~ 98 (298)
T 2cw6_A 33 IDMLSEAG--LSVIETTSFVSPKWVPQMGD-HTEVLKGIQKFPGINYP--VLT-----PN----LKGFEAAVAAGAKEVV 98 (298)
T ss_dssp HHHHHHTT--CSEECCEECCCTTTCGGGTT-HHHHHHHSCCCTTCBCC--EEC-----CS----HHHHHHHHHTTCSEEE
T ss_pred HHHHHHcC--cCEEEECCCcCcccccccCC-HHHHHHHHhhCCCCEEE--EEc-----CC----HHhHHHHHHCCCCEEE
Confidence 33444455 8888899875531 11 12 24444444443 43322 121 23 3347788889999999
Q ss_pred ecCCcccCC------------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHH
Q 022982 120 LNVGSLEIP------------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (289)
Q Consensus 120 ISdGti~i~------------~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (289)
|+..+-+.- .+.-.+.|+.+++.|++|.-.+..-+ +...+ +..+++.+
T Consensus 99 i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~-----~~~~~---------------~~~~~~~~ 158 (298)
T 2cw6_A 99 IFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCAL-----GCPYE---------------GKISPAKV 158 (298)
T ss_dssp EEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTT-----CBTTT---------------BSCCHHHH
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEe-----eCCcC---------------CCCCHHHH
Confidence 977654331 13445679999999998643322211 11111 11268999
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
++.++...++||+.|- |.|..|-..+..+.++++
T Consensus 159 ~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~~~~lv~ 192 (298)
T 2cw6_A 159 AEVTKKFYSMGCYEIS-----LGDTIGVGTPGIMKDMLS 192 (298)
T ss_dssp HHHHHHHHHTTCSEEE-----EEETTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEE-----ecCCCCCcCHHHHHHHHH
Confidence 9999999999999774 568888888888877775
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=90.35 E-value=1.9 Score=39.34 Aligned_cols=141 Identities=13% Similarity=0.220 Sum_probs=83.9
Q ss_pred chhHHHHHHHhhc-ccccEEEecCccc-cccChhHHH-----------------HHHHHHHhC--CceecCCcHHHHHHH
Q 022982 39 SHNVLEDIFESMG-QFVDGLKFSGGSH-SLMPKPFIE-----------------EVVKRAHQH--DVYVSTGDWAEHLIR 97 (289)
Q Consensus 39 g~~~~~DlLe~ag-~yID~lKfg~GTs-~l~p~~~l~-----------------eKI~l~~~~--gV~v~~GtlfE~a~~ 97 (289)
.+..+.+++...- .-.|++=+|.=-| .+.+-..++ +.++-.|+. ++++..=|++...+.
T Consensus 32 ~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~ 111 (271)
T 3nav_A 32 NPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYA 111 (271)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHH
Confidence 4556666655543 2499999994321 122222233 345555554 343332267888777
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
.| +++|++.|++.|+|.+=|. ++|.++..++++.++++|+.+.+=+.. .
T Consensus 112 ~g---~~~f~~~~~~aGvdGvIip----Dlp~ee~~~~~~~~~~~gl~~I~lvap---~--------------------- 160 (271)
T 3nav_A 112 RG---IDDFYQRCQKAGVDSVLIA----DVPTNESQPFVAAAEKFGIQPIFIAPP---T--------------------- 160 (271)
T ss_dssp TC---HHHHHHHHHHHTCCEEEET----TSCGGGCHHHHHHHHHTTCEEEEEECT---T---------------------
T ss_pred Hh---HHHHHHHHHHCCCCEEEEC----CCCHHHHHHHHHHHHHcCCeEEEEECC---C---------------------
Confidence 75 8999999999999999886 577788889999999999885443311 0
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc-ccccCCCCccH
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRA 218 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-GI~d~~G~~r~ 218 (289)
+++ +++++-.+.+..+|=.-++ |++........
T Consensus 161 -----t~~---eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~ 194 (271)
T 3nav_A 161 -----ASD---ETLRAVAQLGKGYTYLLSRAGVTGAETKANM 194 (271)
T ss_dssp -----CCH---HHHHHHHHHCCSCEEECCCC--------CCH
T ss_pred -----CCH---HHHHHHHHHCCCeEEEEeccCCCCcccCCch
Confidence 123 3444444667777877776 66665544443
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=90.34 E-value=0.62 Score=43.18 Aligned_cols=99 Identities=17% Similarity=0.255 Sum_probs=67.3
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHH
Q 022982 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (289)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (289)
-.+..++-|.++|-|-|| ++....|+.+.++|..|.-.+|..-.. ...++.+....+- . ..+
T Consensus 118 a~rl~~eaGa~aVklEdg------~e~~~~I~al~~agIpV~gHiGLtPqs-------v~~~ggf~v~grt----~-~a~ 179 (281)
T 1oy0_A 118 ATRFLKDGGAHAVKLEGG------ERVAEQIACLTAAGIPVMAHIGFTPQS-------VNTLGGFRVQGRG----D-AAE 179 (281)
T ss_dssp HHHHHHTTCCSEEEEEBS------GGGHHHHHHHHHHTCCEEEEEECCC---------------------C----H-HHH
T ss_pred HHHHHHHhCCeEEEECCc------HHHHHHHHHHHHCCCCEEeeecCCcce-------ecccCCeEEEeCc----H-HHH
Confidence 355668899999999999 467889999999999888888874211 1111111110010 1 268
Q ss_pred HHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 022982 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 186 ~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
++|+.+++..+|||+.|.+|+- ..++.++|.+.+++-
T Consensus 180 ~~i~rA~a~~eAGA~~ivlE~v---------p~~~a~~it~~l~iP 216 (281)
T 1oy0_A 180 QTIADAIAVAEAGAFAVVMEMV---------PAELATQITGKLTIP 216 (281)
T ss_dssp HHHHHHHHHHHHTCSEEEEESC---------CHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHcCCcEEEEecC---------CHHHHHHHHHhCCCC
Confidence 9999999999999999999982 245677777776643
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=90.32 E-value=1.1 Score=41.67 Aligned_cols=141 Identities=13% Similarity=0.102 Sum_probs=86.3
Q ss_pred HHHhhcccccEEEecCccccccChhHHHHHHHHHHh----CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 46 IFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ----HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 46 lLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~----~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
.|..+| ||.+=.||+.+.-.+.+.+++..+.... -++.+. ++..+ . + .++.+.+.|.+.|-|.
T Consensus 50 ~L~~~G--v~~IE~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~-------~l~~~--~-~-~i~~a~~~g~~~v~i~ 116 (337)
T 3ble_A 50 LLQKLN--VDRVEIASARVSKGELETVQKIMEWAATEQLTERIEIL-------GFVDG--N-K-TVDWIKDSGAKVLNLL 116 (337)
T ss_dssp HHHTTC--CSEEEEEETTSCTTHHHHHHHHHHHHHHTTCGGGEEEE-------EESST--T-H-HHHHHHHHTCCEEEEE
T ss_pred HHHHcC--CCEEEEeCCCCChhHHHHHHHHHhhhhhhccCCCCeEE-------EEccc--h-h-hHHHHHHCCCCEEEEE
Confidence 444455 7888888876533333556655554321 122221 22222 1 1 5788888999999986
Q ss_pred CCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 122 VGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 122 dGti~i------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
..+-++ ..+.-.+.|+.+++.|++|. +...+ +...+..+++.+++
T Consensus 117 ~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~--~~~~~---------------------~~~~~~~~~~~~~~ 173 (337)
T 3ble_A 117 TKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKIN--VYLED---------------------WSNGFRNSPDYVKS 173 (337)
T ss_dssp EECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEE--EEEET---------------------HHHHHHHCHHHHHH
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE--EEEEE---------------------CCCCCcCCHHHHHH
Confidence 543222 12455678899999998753 44421 00001125889999
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhc
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~ 227 (289)
.+++..++||+.|. |+|..|-..+..+.++++.
T Consensus 174 ~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~ 206 (337)
T 3ble_A 174 LVEHLSKEHIERIF-----LPDTLGVLSPEETFQGVDS 206 (337)
T ss_dssp HHHHHHTSCCSEEE-----EECTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEE-----EecCCCCcCHHHHHHHHHH
Confidence 99999999999774 5777787777777666643
|
| >3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=90.28 E-value=0.4 Score=41.81 Aligned_cols=136 Identities=13% Similarity=0.173 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.+++.++.++++||+.||+. +.. + +..++-+.+++.|+++..- ...... + |..+ .
T Consensus 32 ~~~~~l~~~~~~G~~~vEl~-~~~--~--~~~~~~~~l~~~gl~~~~~-~~~~~~-------~--------~~~~----~ 86 (301)
T 3cny_A 32 NLQQLLSDIVVAGFQGTEVG-GFF--P--GPEKLNYELKLRNLEIAGQ-WFSSYI-------I--------RDGI----E 86 (301)
T ss_dssp CHHHHHHHHHHHTCCEECCC-TTC--C--CHHHHHHHHHHTTCEECEE-EEEECH-------H--------HHHH----H
T ss_pred CHHHHHHHHHHhCCCEEEec-CCC--C--CHHHHHHHHHHCCCeEEEE-eccCCC-------C--------hhhH----H
Confidence 68899999999999999999 333 3 5667888899999997764 221100 0 0000 1
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEecc-----ccccC--C--CCc-cHH-------H---HHHHHhccCCCceEEecC---
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSD-----DVCKH--A--DSL-RAD-------I---IAKVIGRLGLEKTMFEAT--- 238 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEar-----GI~d~--~--G~~-r~d-------~---v~~ii~~l~~eklifEAP--- 238 (289)
...+.+.+.++..-+.||..|++=+- |-+.. . ... +.+ . +.++++..|+ +|.+|.-
T Consensus 87 ~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lE~~~~~ 165 (301)
T 3cny_A 87 KASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGL-KVAYHHHMGT 165 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTC-EEEEECCTTS
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCC-EEEEecCCCc
Confidence 12455566666666899999988641 33211 0 111 222 1 2233344555 5888853
Q ss_pred ---CchhHHHHHHHhCC-CcccccCCCCc
Q 022982 239 ---NPRTSEWFIRRYGP-KVNLFVDHSQV 263 (289)
Q Consensus 239 ---~k~qQ~~~I~~fG~-~VNLgI~~~eV 263 (289)
.+.+-..++++.++ +|-+..|..+.
T Consensus 166 ~~~~~~~~~~l~~~~~~~~vg~~~D~~h~ 194 (301)
T 3cny_A 166 GIQTKEETDRLMANTDPKLVGLLYDTGHI 194 (301)
T ss_dssp SSCSHHHHHHHHHTSCTTTCEEEEEHHHH
T ss_pred ccCCHHHHHHHHHhCCccceeEEechHHH
Confidence 45677889999985 45544554433
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=1.7 Score=46.12 Aligned_cols=78 Identities=10% Similarity=0.074 Sum_probs=49.8
Q ss_pred hhHHHHHHHhh-cccccEEEec-----------CccccccChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHH
Q 022982 40 HNVLEDIFESM-GQFVDGLKFS-----------GGSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKE 105 (289)
Q Consensus 40 ~~~~~DlLe~a-g~yID~lKfg-----------~GTs~l~p~~~l~eKI~l~~~~-gV~v~~-GtlfE~a~~qg~~~~~~ 105 (289)
+..+.++.+.+ ....|++=+- +|.+.....+.+.+.++-.+++ ++++.- .. .+...+.+
T Consensus 647 ~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~-------~~~~~~~~ 719 (1025)
T 1gte_A 647 KNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLT-------PNVTDIVS 719 (1025)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEEC-------SCSSCHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeC-------CChHHHHH
Confidence 44555555544 2345666554 4555556778899999999887 655442 11 01124677
Q ss_pred HHHHHHHcCCCEEEecCCc
Q 022982 106 YVEDCKQVGFDTIELNVGS 124 (289)
Q Consensus 106 yl~~~k~lGF~~IEISdGt 124 (289)
+.+.+.+.|.|+|-+||.+
T Consensus 720 ~a~~~~~~G~d~i~v~Nt~ 738 (1025)
T 1gte_A 720 IARAAKEGGADGVTATNTV 738 (1025)
T ss_dssp HHHHHHHHTCSEEEECCCE
T ss_pred HHHHHHHcCCCEEEEeccc
Confidence 7888899999999998754
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.06 E-value=2.2 Score=38.83 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~-~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-= ++.-=+|+ |
T Consensus 25 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv-------g----------------- 80 (294)
T 3b4u_A 25 AMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGV-------L----------------- 80 (294)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEE-------C-----------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC-------C-----------------
Confidence 67888999999999999886553 57999999999999998411 11111233 1
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
..+..+.|++++..-++|||.|++=.
T Consensus 81 ---~~~t~~ai~la~~A~~~Gadavlv~~ 106 (294)
T 3b4u_A 81 ---VDSIEDAADQSAEALNAGARNILLAP 106 (294)
T ss_dssp ---CSSHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ---CccHHHHHHHHHHHHhcCCCEEEEcC
Confidence 11477889999999999999999854
|
| >2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=89.97 E-value=1.5 Score=39.31 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCEEEecCCcc-cCC----hhHHHHHHHHHHHcCCc---ccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSL-EIP----EETLLRYVRLVKSAGLK---AKP 148 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti-~i~----~~~r~~lI~~~~~~G~~---v~~ 148 (289)
+.++.++++||+.||++.... ..+ ..+..++-+.+++.|++ +.+
T Consensus 35 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~l~~~gL~~~~i~~ 86 (335)
T 2qw5_A 35 AHIKKLQRFGYSGFEFPIAPGLPENYAQDLENYTNLRHYLDSEGLENVKIST 86 (335)
T ss_dssp HHHHHHHHTTCCEEEEECCCCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEEE
T ss_pred HHHHHHHHhCCCEEEEecCCCcccccccchHHHHHHHHHHHHCCCCcceeEE
Confidence 899999999999999986543 222 36677888889999999 655
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=89.85 E-value=2.4 Score=35.63 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=61.4
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
.+....++++..++++|++|+|++.+.-...+.+++.- +.+ ++++..+--+ .+ --+.|.+.+.+.|.|.
T Consensus 11 ~~~~~~~~~~~~~~~v~~iev~~~~~~~~g~~~i~~l~---~~~~~~~i~~~l~~-----~d--i~~~~~~~a~~~Gad~ 80 (207)
T 3ajx_A 11 STEAALELAGKVAEYVDIIELGTPLIKAEGLSVITAVK---KAHPDKIVFADMKT-----MD--AGELEADIAFKAGADL 80 (207)
T ss_dssp CHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHH---HHSTTSEEEEEEEE-----CS--CHHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHHhhccCCEEEECcHHHHhhCHHHHHHHH---HhCCCCeEEEEEEe-----cC--ccHHHHHHHHhCCCCE
Confidence 56688889999999999999999865334444444422 223 5554432100 12 1355788999999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 118 IELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
|=|..+.- .+.-.++++.+++.|..
T Consensus 81 v~vh~~~~---~~~~~~~~~~~~~~g~~ 105 (207)
T 3ajx_A 81 VTVLGSAD---DSTIAGAVKAAQAHNKG 105 (207)
T ss_dssp EEEETTSC---HHHHHHHHHHHHHHTCE
T ss_pred EEEeccCC---hHHHHHHHHHHHHcCCc
Confidence 98887654 23445677777777766
|
| >3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=89.61 E-value=0.55 Score=40.83 Aligned_cols=47 Identities=26% Similarity=0.221 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHHcCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt----i~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
.+++.++.++++||++||+.... ..++.++..++.+.+++.|+++..
T Consensus 16 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 66 (286)
T 3dx5_A 16 SFTDIVQFAYENGFEGIELWGTHAQNLYMQEYETTERELNCLKDKTLEITM 66 (286)
T ss_dssp CHHHHHHHHHHTTCCEEEEEHHHHHHHHHHCHHHHHHHHHHTGGGTCCEEE
T ss_pred CHHHHHHHHHHhCCCEEEEcccccccccccCHHHHHHHHHHHHHcCCeEEE
Confidence 46677777777777777774211 113345556666666777776543
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=89.61 E-value=1.5 Score=40.23 Aligned_cols=143 Identities=12% Similarity=0.123 Sum_probs=87.4
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhC-CchHHHHHHHHHHcCCCEEEe
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG-PSAFKEYVEDCKQVGFDTIEL 120 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg-~~~~~~yl~~~k~lGF~~IEI 120 (289)
.+-+.|..+| +|.+=.||..+.=-+.+.+++..+.. -++.+.. +.++ +..++..++..+..|.+.|-|
T Consensus 31 ~i~~~L~~~G--v~~IE~g~p~~~~~d~e~v~~i~~~~--~~~~i~~-------l~~~~~~di~~a~~~~~~ag~~~v~i 99 (293)
T 3ewb_X 31 QIALQLEKLG--IDVIEAGFPISSPGDFECVKAIAKAI--KHCSVTG-------LARCVEGDIDRAEEALKDAVSPQIHI 99 (293)
T ss_dssp HHHHHHHHHT--CSEEEEECGGGCHHHHHHHHHHHHHC--CSSEEEE-------EEESSHHHHHHHHHHHTTCSSEEEEE
T ss_pred HHHHHHHHcC--CCEEEEeCCCCCccHHHHHHHHHHhc--CCCEEEE-------EecCCHHHHHHHHHHHhhcCCCEEEE
Confidence 3445566666 77788888654322233444433322 2343321 1111 114666666677789998887
Q ss_pred cCCccc--------CChh----HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 121 NVGSLE--------IPEE----TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 121 SdGti~--------i~~~----~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
...+-+ .+.+ .-.+.|+.+++.|+.|. |+..+. +..|++.++
T Consensus 100 ~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~--~~~~d~------------------------~~~~~~~~~ 153 (293)
T 3ewb_X 100 FLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQ--FSPEDA------------------------TRSDRAFLI 153 (293)
T ss_dssp EEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEE--EEEETG------------------------GGSCHHHHH
T ss_pred EecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEE--EEeccC------------------------CCCCHHHHH
Confidence 654432 2222 34577888899888753 444221 012588899
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
+.+++..++||+.| .|.|..|-..+..+.++++
T Consensus 154 ~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~ 186 (293)
T 3ewb_X 154 EAVQTAIDAGATVI-----NIPDTVGYTNPTEFGQLFQ 186 (293)
T ss_dssp HHHHHHHHTTCCEE-----EEECSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCEE-----EecCCCCCCCHHHHHHHHH
Confidence 99999999999976 4788888888887777764
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=89.47 E-value=1.3 Score=44.52 Aligned_cols=147 Identities=11% Similarity=0.126 Sum_probs=100.1
Q ss_pred hhcccccEEEecCccccccChhHHHHHHHHHHhCCcee--cCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 022982 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (289)
Q Consensus 49 ~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v--~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (289)
....=+|.+-+-..++-+ +.+++-|+.++++|..+ +... |.....+++.+-+..+.+.+.|.+.|=|-|-.--
T Consensus 126 a~~aGvd~vrIf~s~sd~---~ni~~~i~~ak~~G~~v~~~i~~--~~~~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~ 200 (539)
T 1rqb_A 126 SAENGMDVFRVFDAMNDP---RNMAHAMAAVKKAGKHAQGTICY--TISPVHTVEGYVKLAGQLLDMGADSIALKDMAAL 200 (539)
T ss_dssp HHHTTCCEEEECCTTCCT---HHHHHHHHHHHHTTCEEEEEEEC--CCSTTCCHHHHHHHHHHHHHTTCSEEEEEETTCC
T ss_pred HHhCCCCEEEEEEehhHH---HHHHHHHHHHHHCCCeEEEEEEe--eeCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 333448888887766665 57999999999999966 2110 0001223445666677778899999999998888
Q ss_pred CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 127 IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 127 i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
+.+.+-.++|+.++++ +...-.+++.+ .. |...-+-.+...++|||+.| ++
T Consensus 201 ~~P~~v~~lv~~l~~~-~p~~i~I~~H~-Hn-------------------------d~GlAvAN~laAveAGa~~V--D~ 251 (539)
T 1rqb_A 201 LKPQPAYDIIKAIKDT-YGQKTQINLHC-HS-------------------------TTGVTEVSLMKAIEAGVDVV--DT 251 (539)
T ss_dssp CCHHHHHHHHHHHHHH-HCTTCCEEEEE-BC-------------------------TTSCHHHHHHHHHHTTCSEE--EE
T ss_pred cCHHHHHHHHHHHHHh-cCCCceEEEEe-CC-------------------------CCChHHHHHHHHHHhCCCEE--EE
Confidence 8899889999999884 10012344432 11 12223677788999999965 65
Q ss_pred c--ccccCCCCccHHHHHHHHhccC
Q 022982 207 D--DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 207 r--GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
- |+=...||...+.+-..+...|
T Consensus 252 ti~g~GertGN~~lE~lv~~L~~~g 276 (539)
T 1rqb_A 252 AISSMSLGPGHNPTESVAEMLEGTG 276 (539)
T ss_dssp BCGGGCSTTSBCBHHHHHHHTTTSS
T ss_pred eccccCCCccChhHHHHHHHHHhcC
Confidence 4 8878889988887766665544
|
| >3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0 | Back alignment and structure |
|---|
Probab=89.42 E-value=3.5 Score=35.61 Aligned_cols=144 Identities=15% Similarity=0.114 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.+++.++.++++||+.||+..-. ..+..++-+.+++.|+++.. ++. +..... ..+.-+ ...|... .
T Consensus 24 ~~~~~l~~~~~~G~~~vEl~~~~----~~~~~~~~~~l~~~gl~~~~-~~~--~~~~~~-~~~~~~--~~~~~~r----~ 89 (269)
T 3ngf_A 24 PFLERFRLAAEAGFGGVEFLFPY----DFDADVIARELKQHNLTQVL-FNM--PPGDWA-AGERGM--AAISGRE----Q 89 (269)
T ss_dssp CHHHHHHHHHHTTCSEEECSCCT----TSCHHHHHHHHHHTTCEEEE-EEC--CCSCTT-TTCCBC--TTCTTCH----H
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCcEEE-Eec--CCCccc-cCCCCc--CCCccHH----H
Confidence 79999999999999999998521 23456788888999999754 221 110000 000000 0001110 1
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccH-------HHHHH---HHhccCCCceEEec------C-----Cc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA-------DIIAK---VIGRLGLEKTMFEA------T-----NP 240 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~-------d~v~~---ii~~l~~eklifEA------P-----~k 240 (289)
...+.+.+.++..-+.||..|.+-+ | . ..+.-+. +.+.+ +++..|+ +|.+|. | ..
T Consensus 90 ~~~~~~~~~i~~A~~lGa~~v~~~~-g-~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~n~~~~~~~~~~~~ 165 (269)
T 3ngf_A 90 EFRDNVDIALHYALALDCRTLHAMS-G-I-TEGLDRKACEETFIENFRYAADKLAPHGI-TVLVEPLNTRNMPGYFIVHQ 165 (269)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEECCB-C-B-CTTSCHHHHHHHHHHHHHHHHHHHGGGTC-EEEECCCCTTTSTTBSCCCH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcc-C-C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEeeCCcccCccchhcCH
Confidence 1234445555555578999998854 3 2 2221111 22222 3344555 588894 2 45
Q ss_pred hhHHHHHHHhCC-CcccccCCCCc
Q 022982 241 RTSEWFIRRYGP-KVNLFVDHSQV 263 (289)
Q Consensus 241 ~qQ~~~I~~fG~-~VNLgI~~~eV 263 (289)
.+-..++++.|+ +|-+.+|...+
T Consensus 166 ~~~~~l~~~v~~~~vg~~~D~~h~ 189 (269)
T 3ngf_A 166 LEAVGLVKRVNRPNVAVQLDLYHA 189 (269)
T ss_dssp HHHHHHHHHHCCTTEEEEEEHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEhhhH
Confidence 567889999984 44443554443
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.40 E-value=2.1 Score=38.87 Aligned_cols=144 Identities=15% Similarity=0.145 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+ |
T Consensus 21 ~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGv-------g--------------- 77 (294)
T 2ehh_A 21 EALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAG-RIKVIAGT-------G--------------- 77 (294)
T ss_dssp HHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEEC-------C---------------
T ss_pred HHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEec-------C---------------
Confidence 36788899999999999988654 4489999999999999873 2 11111233 1
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHHh
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVIG 226 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~---~G-~~r~d~v~~ii~ 226 (289)
..+..+.|++++..-++|||.|++=.- -||+. .| ++..+.+.++++
T Consensus 78 -----~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (294)
T 2ehh_A 78 -----GNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLAS 152 (294)
T ss_dssp -----CSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHHh
Confidence 114778899999999999999998652 15663 23 678899999984
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 227 RLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 227 ~l~~eklif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
+. .+|+- |+ ++-.+...+++..++++.+. .-+|-+.+++|..|--|
T Consensus 153 ~~--pnivgiKds~gd~~~~~~~~~~~~~~f~v~-~G~d~~~~~~l~~G~~G 201 (294)
T 2ehh_A 153 EC--ENIVASKESTPNMDRISEIVKRLGESFSVL-SGDDSLTLPMMALGAKG 201 (294)
T ss_dssp HC--TTEEEEEECCSCHHHHHHHHHHHCTTSEEE-ESSGGGHHHHHHTTCCE
T ss_pred hC--CCEEEEEeCCCCHHHHHHHHHhcCCCeEEE-ECcHHHHHHHHHCCCCE
Confidence 44 45542 55 46667778888888776654 33455678899877544
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=89.37 E-value=1.3 Score=41.27 Aligned_cols=116 Identities=19% Similarity=0.257 Sum_probs=74.0
Q ss_pred HHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHHHHHHHcC
Q 022982 78 RAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 78 l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI~~~~~~G 143 (289)
+++..++++.- + || .+|..+-+-.+...+.|..+|-|=|+.. -+|.++-++-|+.+++.-
T Consensus 78 I~r~~~~PviaD~d~Gy------g~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~ 151 (298)
T 3eoo_A 78 ITNATNLPLLVDIDTGW------GGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDAR 151 (298)
T ss_dssp HHHHCCSCEEEECTTCS------SSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHC
T ss_pred HHhhcCCeEEEECCCCC------CCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhc
Confidence 45566776553 1 23 1222334445566678999999999874 367887777777776641
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHH
Q 022982 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAK 223 (289)
Q Consensus 144 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ 223 (289)
- -+.|-+.- .-|. + .....++.|++++...+||||.|.+|+- -..+++.+
T Consensus 152 ~--~~~~~I~A-------RTDa-~------------~~~gldeai~Ra~ay~~AGAD~if~~~~--------~~~ee~~~ 201 (298)
T 3eoo_A 152 T--DETFVIMA-------RTDA-A------------AAEGIDAAIERAIAYVEAGADMIFPEAM--------KTLDDYRR 201 (298)
T ss_dssp S--STTSEEEE-------EECT-H------------HHHHHHHHHHHHHHHHHTTCSEEEECCC--------CSHHHHHH
T ss_pred c--CCCeEEEE-------eehh-h------------hhcCHHHHHHHHHhhHhcCCCEEEeCCC--------CCHHHHHH
Confidence 0 12333310 1121 0 1224789999999999999999999984 14777888
Q ss_pred HHhccC
Q 022982 224 VIGRLG 229 (289)
Q Consensus 224 ii~~l~ 229 (289)
+.+.++
T Consensus 202 ~~~~~~ 207 (298)
T 3eoo_A 202 FKEAVK 207 (298)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 887776
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=89.25 E-value=1.2 Score=38.26 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=70.4
Q ss_pred HHHHHHhhccc-ccEEEecCccc-cccChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022982 43 LEDIFESMGQF-VDGLKFSGGSH-SLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (289)
Q Consensus 43 ~~DlLe~ag~y-ID~lKfg~GTs-~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (289)
+++.++.+.+. .|.+=+..... .-++.+.+++..++++++|+.++. +.+.. +..+.+++.++.|+++|.+.|=
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~----~~~~~~~~~i~~A~~lGa~~v~ 107 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM----KSEEEIDRAFDYAKRVGVKLIV 107 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE----CSHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc----CCHHHHHHHHHHHHHhCCCEEE
Confidence 45555544443 67777665421 123456689999999999998775 32211 2334789999999999999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 022982 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (289)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g 151 (289)
+.-| .+.+.++.+.+++.|.++.-|-.
T Consensus 108 ~~p~-----~~~l~~l~~~a~~~gv~l~lEn~ 134 (257)
T 3lmz_A 108 GVPN-----YELLPYVDKKVKEYDFHYAIHLH 134 (257)
T ss_dssp EEEC-----GGGHHHHHHHHHHHTCEEEEECC
T ss_pred ecCC-----HHHHHHHHHHHHHcCCEEEEecC
Confidence 8654 57778899999999998666654
|
| >3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=89.24 E-value=0.23 Score=43.48 Aligned_cols=151 Identities=13% Similarity=0.138 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccc-----ccccccccCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS-LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR-----AFGAYVARAP 175 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt-i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~-----~~~~~~~~~~ 175 (289)
.+++.++.++++||+.||+.... ..++.++..++.+.+++.|+++..- ..-...... .|. .++ ...|..
T Consensus 22 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~g~~~---~~~~~~~~~~~-~~~~~~ 96 (290)
T 3tva_A 22 GLGVHLEVAQDLKVPTVQVHAPHPHTRTREHAQAFRAKCDAAGIQVTVI-FGGFDGESY---ADIPTTARTVG-LVPLET 96 (290)
T ss_dssp SSSBCHHHHHHTTCSEEEEECCCGGGCSHHHHHHHHHHHHHTTCEEEEE-ECCCTTCCC---SSHHHHHHHSS-SCSTTT
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCCcCCHHHHHHHHHHHHHcCCEEEEE-eeccCCccc---ccccccccccC-CCCHHH
Confidence 67888999999999999999743 3577888889999999999987552 210000000 000 000 000111
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEeccccccCC--CCcc--HHHHHH---HHhccCCCceEEecC--CchhHHHH
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA--DSLR--ADIIAK---VIGRLGLEKTMFEAT--NPRTSEWF 246 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~--G~~r--~d~v~~---ii~~l~~eklifEAP--~k~qQ~~~ 246 (289)
+ ....+.+.+.++..-+.||..|++-+ |....+ ..++ .+.+.+ +++..|+ ++.+|.- .+.+-..+
T Consensus 97 r----~~~~~~~~~~i~~a~~lG~~~v~~~~-G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~~~~~~~~~~l 170 (290)
T 3tva_A 97 R----ASRVAEMKEISDFASWVGCPAIGLHI-GFVPESSSPDYSELVRVTQDLLTHAANHGQ-AVHLETGQESADHLLEF 170 (290)
T ss_dssp H----HHHHHHHHHHHHHHHHHTCSEEEECC-CCCCCTTSHHHHHHHHHHHHHHHHHHTTTC-EEEEECCSSCHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHcCCCEEEEcC-CCCcccchHHHHHHHHHHHHHHHHHHHcCC-EEEEecCCCCHHHHHHH
Confidence 1 11244555555555678999999864 211111 0010 112222 3334454 5667763 45677889
Q ss_pred HHHhC-CCcccccCCCCc
Q 022982 247 IRRYG-PKVNLFVDHSQV 263 (289)
Q Consensus 247 I~~fG-~~VNLgI~~~eV 263 (289)
++.+| |+|-+-.|..+.
T Consensus 171 ~~~~~~~~~g~~~D~~h~ 188 (290)
T 3tva_A 171 IEDVNRPNLGINFDPANM 188 (290)
T ss_dssp HHHHCCTTEEEEECHHHH
T ss_pred HHhcCCCCEEEEeccHHH
Confidence 99998 555553554443
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=89.19 E-value=0.9 Score=41.63 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=55.8
Q ss_pred chhHHHHHHHhhcccccEEEe------------cCccccccChhHHHHHHHHHHhC-Cceec----CCcHHHHHHHhCCc
Q 022982 39 SHNVLEDIFESMGQFVDGLKF------------SGGSHSLMPKPFIEEVVKRAHQH-DVYVS----TGDWAEHLIRNGPS 101 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKf------------g~GTs~l~p~~~l~eKI~l~~~~-gV~v~----~GtlfE~a~~qg~~ 101 (289)
.+..+.+....+-++.|.+-+ ++|++.+-..+.+.+.++-.++. +++|. +| |-+ .+
T Consensus 69 ~~~~~~~aa~~a~~~~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G-~~~------~~ 141 (318)
T 1vhn_A 69 EPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLG-WEK------NE 141 (318)
T ss_dssp CHHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESC-SSS------CC
T ss_pred CHHHHHHHHHHHHHhCCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCC-CCh------HH
Confidence 355666666666666888776 45667777788899999888774 55443 33 311 12
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL 125 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti 125 (289)
.+ ++.+.+.+.|.++|.|+.++-
T Consensus 142 ~~-~~a~~l~~~G~d~i~v~g~~~ 164 (318)
T 1vhn_A 142 VE-EIYRILVEEGVDEVFIHTRTV 164 (318)
T ss_dssp HH-HHHHHHHHTTCCEEEEESSCT
T ss_pred HH-HHHHHHHHhCCCEEEEcCCCc
Confidence 33 888999999999999998764
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=89.16 E-value=1.5 Score=38.84 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=74.4
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
+.+.+++.- +|++=+ +++.+.+++.+++-++.+|++|+.+...- ... +..+.+.++|+|+|=++
T Consensus 93 ~i~~~~~~G---ad~V~l--~~~~~~~p~~l~~~i~~~~~~g~~v~~~v----------~t~-eea~~a~~~Gad~Ig~~ 156 (232)
T 3igs_A 93 DVDALAQAG---AAIIAV--DGTARQRPVAVEALLARIHHHHLLTMADC----------SSV-DDGLACQRLGADIIGTT 156 (232)
T ss_dssp HHHHHHHHT---CSEEEE--ECCSSCCSSCHHHHHHHHHHTTCEEEEEC----------CSH-HHHHHHHHTTCSEEECT
T ss_pred HHHHHHHcC---CCEEEE--CccccCCHHHHHHHHHHHHHCCCEEEEeC----------CCH-HHHHHHHhCCCCEEEEc
Confidence 455555443 455533 34455444679999999999999877641 011 23355678999999543
Q ss_pred C-Cccc---CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHc
Q 022982 122 V-GSLE---IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (289)
Q Consensus 122 d-Gti~---i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeA 197 (289)
. |..+ ....+ .++++++++.+..|..+-|+.. .+.+++.+++
T Consensus 157 ~~g~t~~~~~~~~~-~~~i~~l~~~~ipvIA~GGI~t---------------------------------~~d~~~~~~~ 202 (232)
T 3igs_A 157 MSGYTTPDTPEEPD-LPLVKALHDAGCRVIAEGRYNS---------------------------------PALAAEAIRY 202 (232)
T ss_dssp TTTSSSSSCCSSCC-HHHHHHHHHTTCCEEEESCCCS---------------------------------HHHHHHHHHT
T ss_pred CccCCCCCCCCCCC-HHHHHHHHhcCCcEEEECCCCC---------------------------------HHHHHHHHHc
Confidence 2 2211 11112 3677777776677777777621 3556677899
Q ss_pred cCcEEEEecccccc
Q 022982 198 GADMIMIDSDDVCK 211 (289)
Q Consensus 198 GA~~ViiEarGI~d 211 (289)
||+-|+| +..|++
T Consensus 203 GadgV~V-Gsal~~ 215 (232)
T 3igs_A 203 GAWAVTV-GSAITR 215 (232)
T ss_dssp TCSEEEE-CHHHHC
T ss_pred CCCEEEE-ehHhcC
Confidence 9999999 566764
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=89.05 E-value=1.1 Score=41.84 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=60.5
Q ss_pred hhHHHHHHHhhccc-ccEEEec------------CccccccChhHHHHHHHHHHh-CCceecC----CcHHHHHHHhCCc
Q 022982 40 HNVLEDIFESMGQF-VDGLKFS------------GGSHSLMPKPFIEEVVKRAHQ-HDVYVST----GDWAEHLIRNGPS 101 (289)
Q Consensus 40 ~~~~~DlLe~ag~y-ID~lKfg------------~GTs~l~p~~~l~eKI~l~~~-~gV~v~~----GtlfE~a~~qg~~ 101 (289)
+..+.+....+-++ .|.+=+. +|++.+-..+.+.+.|+-.++ .+++|.. | |-+. ....
T Consensus 69 p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g-~~~~---~~~~ 144 (350)
T 3b0p_A 69 PKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLG-LEGK---ETYR 144 (350)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESC-BTTC---CCHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecC-cCcc---ccHH
Confidence 44555444444333 5555554 567777888889999988887 3665443 4 2221 0001
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC----------ChhHHHHHHHHHHHc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEI----------PEETLLRYVRLVKSA 142 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i----------~~~~r~~lI~~~~~~ 142 (289)
...++.+.+.+.|.++|-|+.++-.. +.-+ ..+|+.+++.
T Consensus 145 ~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~-~~~i~~ik~~ 194 (350)
T 3b0p_A 145 GLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLR-HDWVHRLKGD 194 (350)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCBC----------CCCCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCccc-HHHHHHHHHh
Confidence 35677888999999999999976421 1112 4678887773
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=89.02 E-value=2.3 Score=36.29 Aligned_cols=48 Identities=4% Similarity=-0.081 Sum_probs=33.7
Q ss_pred HHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 022982 76 VKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (289)
Q Consensus 76 I~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (289)
++.++++ ||.+.|.|-.|....+-.+.++.....+.+.||+.+-++..
T Consensus 93 i~~~~~~~gv~vl~~t~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~~ 141 (208)
T 2czd_A 93 VMAVKELGEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGT 141 (208)
T ss_dssp HHHHHTTSEEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCS
T ss_pred HHHHHHhCCcEEEEecCCcchhhHHHHHHHHHHHHHHHhCCcEEEECCC
Confidence 5666666 99888876333221100238999999999999999988865
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=4.8 Score=37.43 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCEEEecCCc--c------c----------CChhHHH----HHHHHHHHcCCcccce--eeeecCCCC
Q 022982 103 FKEYVEDCKQVGFDTIELNVGS--L------E----------IPEETLL----RYVRLVKSAGLKAKPK--FAVMFNKSD 158 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt--i------~----------i~~~~r~----~lI~~~~~~G~~v~~E--~g~k~~~~e 158 (289)
|-+--+.|++.|||.|||.-+. + + -+.+.|. ++|+.+++. +-++ +++|..
T Consensus 154 f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~a---vG~d~pV~vRls--- 227 (349)
T 3hgj_A 154 FVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREV---VPRELPLFVRVS--- 227 (349)
T ss_dssp HHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHH---SCTTSCEEEEEE---
T ss_pred HHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHH---hcCCceEEEEec---
Confidence 3333455678899999997654 1 1 1345554 455555553 1111 455442
Q ss_pred CCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 159 IPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 159 vg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
|..|...+. ++++.++.++..-++|+++|-+=.
T Consensus 228 --------------~~~~~~~g~-~~~~~~~la~~L~~~Gvd~i~vs~ 260 (349)
T 3hgj_A 228 --------------ATDWGEGGW-SLEDTLAFARRLKELGVDLLDCSS 260 (349)
T ss_dssp --------------SCCCSTTSC-CHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred --------------cccccCCCC-CHHHHHHHHHHHHHcCCCEEEEec
Confidence 222221122 578889999998999999998754
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=88.94 E-value=5.9 Score=38.59 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC-----------------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIP-----------------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRD 164 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~-----------------~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d 164 (289)
.+.+..+.|.+.|.|+|-+++++..-. ...-.++|+.+++.=-.-+|=++.
T Consensus 312 d~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~------------ 379 (443)
T 1tv5_A 312 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIAS------------ 379 (443)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEE------------
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEE------------
Confidence 567788889999999999999987311 111357788887740001233333
Q ss_pred cccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccc-cc
Q 022982 165 RAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD-VC 210 (289)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarG-I~ 210 (289)
|. +.|+ +.+.+.|++||+.|++ +|+ +|
T Consensus 380 ---GG-----------I~s~----~DA~e~l~aGAd~Vqi-grall~ 407 (443)
T 1tv5_A 380 ---GG-----------IFSG----LDALEKIEAGASVCQL-YSCLVF 407 (443)
T ss_dssp ---SS-----------CCSH----HHHHHHHHTTEEEEEE-SHHHHH
T ss_pred ---CC-----------CCCH----HHHHHHHHcCCCEEEE-cHHHHh
Confidence 11 1123 4555677899999998 454 44
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=88.87 E-value=5.9 Score=37.03 Aligned_cols=197 Identities=15% Similarity=0.145 Sum_probs=116.5
Q ss_pred chhHHHHHHHhhccc--ccEEEecCccccccChhHHHHHHHHHHh--CCceecC----CcHHHHHHHhCCchHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQF--VDGLKFSGGSHSLMPKPFIEEVVKRAHQ--HDVYVST----GDWAEHLIRNGPSAFKEYVEDC 110 (289)
Q Consensus 39 g~~~~~DlLe~ag~y--ID~lKfg~GTs~l~p~~~l~eKI~l~~~--~gV~v~~----GtlfE~a~~qg~~~~~~yl~~~ 110 (289)
....++.+++.|-+- ==++-++-|+...++.+.+...+..+.+ ++|+|.. |.-+| .+..|
T Consensus 26 n~e~~~avi~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValHLDHg~~~e------------~~~~a 93 (307)
T 3n9r_A 26 NFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFE------------SCEKA 93 (307)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHSTTSCEEEEEEEECSHH------------HHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcChhhhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHH------------HHHHH
Confidence 344555555544321 1135555555555555666666655544 6777774 43333 34456
Q ss_pred HHcCCCEEEecCCcccCCh--hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 111 KQVGFDTIELNVGSLEIPE--ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 111 k~lGF~~IEISdGti~i~~--~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
-+.||+.|=|.--..++.+ +.=.++++.+...|.-|--|+|.= |-.+|.. ....- +....||++..
T Consensus 94 i~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaELG~i------gG~Ed~~-----~~~~~-~~~yT~Peea~ 161 (307)
T 3n9r_A 94 VKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRL------MGIEDNI-----SVDEK-DAVLVNPKEAE 161 (307)
T ss_dssp HHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCC------CCC----------------CCSCCHHHHH
T ss_pred HHhCCCcEEEECCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeee------ccccCCc-----ccccc-cccCCCHHHHH
Confidence 7899999999655554332 122367788888999999999982 1122210 00000 00112688888
Q ss_pred HHHHHHHHccCcEEEEe---ccccccC--CCCccHHHHHHHHhccCCCceEEecC--CchhHHHHHHHhCCCccc--ccC
Q 022982 189 RRAERCLEAGADMIMID---SDDVCKH--ADSLRADIIAKVIGRLGLEKTMFEAT--NPRTSEWFIRRYGPKVNL--FVD 259 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiE---arGI~d~--~G~~r~d~v~~ii~~l~~eklifEAP--~k~qQ~~~I~~fG~~VNL--gI~ 259 (289)
+.+++ -|.|.+=+= +-|.|.. +-.++.|.+++|-+..+.- |.+=-- -|+.-+..|++||-++.= ||+
T Consensus 162 ~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~~~~P-LVlHGgS~vp~~~~~~~~~~gg~~~~~~G~p 237 (307)
T 3n9r_A 162 QFVKE---SQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIP-LVLHGASAIPDNVRKSYLDAGGDLKGSKGVP 237 (307)
T ss_dssp HHHHH---HCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHHCSC-EEESSCCCCCHHHHHHHHHTTCCCTTCBCCC
T ss_pred HHHHH---HCCCEEEEecCCcccccCCCCCCccCHHHHHHHHhcCCCC-eEEeCCCCcchHHHHHHHHhcCccCCCCCCC
Confidence 87774 698876553 2389973 4578999999994322322 555433 367778889999998876 466
Q ss_pred CCCc
Q 022982 260 HSQV 263 (289)
Q Consensus 260 ~~eV 263 (289)
.+|+
T Consensus 238 ~e~i 241 (307)
T 3n9r_A 238 FEFL 241 (307)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=88.87 E-value=2.6 Score=38.31 Aligned_cols=142 Identities=11% Similarity=0.092 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+ |
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pvi~Gv-------g---------------- 78 (291)
T 3a5f_A 23 KLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNK-RIPVIAGT-------G---------------- 78 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEEC-------C----------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEeC-------C----------------
Confidence 6788889888999999988654 3489999999999999873 2 11111233 1
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc--------c-----------------cccC----CCCccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD--------D-----------------VCKH----ADSLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--------G-----------------I~d~----~G~~r~d~v~~ii~~ 227 (289)
..+..+.|++++..-++|||.|++=.- | ||+. .-++..+.+.++++
T Consensus 79 ----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~- 153 (291)
T 3a5f_A 79 ----SNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCE- 153 (291)
T ss_dssp ----CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECHHHHSCCCCHHHHHHHTT-
T ss_pred ----cccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc-
Confidence 114778899999999999999998652 1 4553 23577888888864
Q ss_pred cCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 228 LGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 228 l~~eklif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
..+|+- |+ .+-.+...+++..++++.+. .-+|-+.+++|..|--|
T Consensus 154 --~pnivgiK~s~gd~~~~~~~~~~~~~~f~v~-~G~d~~~~~~l~~G~~G 201 (291)
T 3a5f_A 154 --DKNIVAVXEASGNISQIAQIKALCGDKLDIY-SGNDDQIIPILALGGIG 201 (291)
T ss_dssp --STTEEEEEECSCCHHHHHHHHHHHGGGSEEE-ESCGGGHHHHHHTTCCE
T ss_pred --CCCEEEEeCCCCCHHHHHHHHHhcCCCeEEE-eCcHHHHHHHHHCCCCE
Confidence 345542 55 56677778888888766553 33455688899977544
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=88.84 E-value=1.3 Score=40.97 Aligned_cols=92 Identities=17% Similarity=0.260 Sum_probs=63.4
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHH
Q 022982 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (289)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 192 (289)
-|.++|-|-|| ++....|+.+.++|..|.-.+|..-.. ...++.+.. .... ...+++|+.++
T Consensus 107 aGa~aVklEdg------~e~~~~I~al~~agIpV~gHiGLtPQs-------~~~~ggf~v----~grt-~~a~~~i~rA~ 168 (275)
T 1o66_A 107 AGAHMVKLEGG------VWMAETTEFLQMRGIPVCAHIGLTPQS-------VFAFGGYKV----QGRG-GKAQALLNDAK 168 (275)
T ss_dssp TTCSEEEEECS------GGGHHHHHHHHHTTCCEEEEEESCGGG-------TTC----------------CHHHHHHHHH
T ss_pred cCCcEEEECCc------HHHHHHHHHHHHcCCCeEeeeccCcee-------ecccCCeEE----EeCh-HHHHHHHHHHH
Confidence 89999999999 467889999999999988888873211 111111111 0001 23689999999
Q ss_pred HHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 022982 193 RCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 193 ~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
+..+|||+.|.+|+- ..++.++|.+.+++-
T Consensus 169 a~~eAGA~~ivlE~v---------p~~~a~~it~~l~iP 198 (275)
T 1o66_A 169 AHDDAGAAVVLMECV---------LAELAKKVTETVSCP 198 (275)
T ss_dssp HHHHTTCSEEEEESC---------CHHHHHHHHHHCSSC
T ss_pred HHHHcCCcEEEEecC---------CHHHHHHHHHhCCCC
Confidence 999999999999982 245677777766643
|
| >3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=88.63 E-value=0.55 Score=40.39 Aligned_cols=139 Identities=19% Similarity=0.260 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 179 (289)
.+++.++.++++||+.||+...... ++..+..++.+.+++.|+++.. ++.-.+.. ..|+.+
T Consensus 17 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~~----~~~~~~------------ 79 (281)
T 3u0h_A 17 SLVLYLDLARETGYRYVDVPFHWLEAEAERHGDAAVEAMFQRRGLVLAN-LGLPLNLY----DSEPVF------------ 79 (281)
T ss_dssp CHHHHHHHHHHTTCSEECCCHHHHHHHHHHHCHHHHHHHHHTTTCEECC-EECCSCTT----SCHHHH------------
T ss_pred CHHHHHHHHHHcCCCEEEecHHHHHHHhcccCHHHHHHHHHHcCCceEE-eccccccc----CCCHHH------------
Confidence 6889999999999999999865431 2345567788888999998754 33211110 011110
Q ss_pred ccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccH-------HHHHHH---HhccCCCceEEecC-----------
Q 022982 180 YVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA-------DIIAKV---IGRLGLEKTMFEAT----------- 238 (289)
Q Consensus 180 ~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~-------d~v~~i---i~~l~~eklifEAP----------- 238 (289)
...++.+.+.++..-+.||..|.+-.- ......+. +.+.++ ++..|+ +|.+|.-
T Consensus 80 -~~~~~~~~~~i~~A~~lG~~~v~~~~~---p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~~~~~~~~~~~~ 154 (281)
T 3u0h_A 80 -LRELSLLPDRARLCARLGARSVTAFLW---PSMDEEPVRYISQLARRIRQVAVELLPLGM-RVGLEYVGPHHLRHRRYP 154 (281)
T ss_dssp -HHHHHTHHHHHHHHHHTTCCEEEEECC---SEESSCHHHHHHHHHHHHHHHHHHHGGGTC-EEEEECCCCGGGCCSSEE
T ss_pred -HHHHHHHHHHHHHHHHcCCCEEEEeec---CCCCCcchhhHHHHHHHHHHHHHHHHHcCC-EEEEEecccccccccccc
Confidence 011334445555556789999985321 11111111 222222 344555 4777842
Q ss_pred ---CchhHHHHHHHhCC-CcccccCCCC
Q 022982 239 ---NPRTSEWFIRRYGP-KVNLFVDHSQ 262 (289)
Q Consensus 239 ---~k~qQ~~~I~~fG~-~VNLgI~~~e 262 (289)
...+-..+++..|+ +|-+.+|+.+
T Consensus 155 ~~~~~~~~~~l~~~v~~~~vg~~~D~~h 182 (281)
T 3u0h_A 155 FVQSLADLKTFWEAIGAPNVGALVDSYH 182 (281)
T ss_dssp CCCSHHHHHHHHHHHCCTTEEEEEEHHH
T ss_pred ccCCHHHHHHHHHHcCCCCeeEEeehhH
Confidence 45567789999985 5554344443
|
| >3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=88.57 E-value=5 Score=36.08 Aligned_cols=70 Identities=19% Similarity=0.118 Sum_probs=47.9
Q ss_pred EEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHc-CCCEEEecCCcccCChhHHH
Q 022982 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQV-GFDTIELNVGSLEIPEETLL 133 (289)
Q Consensus 56 ~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~l-GF~~IEISdGti~i~~~~r~ 133 (289)
.-|||.|++.+-++= ..++. |+ +.+..+++.++.++++ ||+.||+.-.. .. .++..
T Consensus 7 ~~~~~~~~w~~~~~~--------------~~f~~~g~------~~~~~~~e~l~~aa~~~G~~~VEl~~~~-~~-~~~~~ 64 (333)
T 3ktc_A 7 YPEFGAGLWHFANYI--------------DRYAVDGY------GPALSTIDQINAAKEVGELSYVDLPYPF-TP-GVTLS 64 (333)
T ss_dssp CCCEEEEGGGGSCCC--------------CSSSTTCS------SCCCCHHHHHHHHHHHSSEEEEEEEESC-ST-TCCHH
T ss_pred CCcceeeeeeeeccc--------------ccccCCCC------CCCCCHHHHHHHHHHhCCCCEEEecCCC-cc-hhHHH
Confidence 358888888876521 22221 22 1134799999999999 99999996111 11 35667
Q ss_pred HHHHHHHHcCCccc
Q 022982 134 RYVRLVKSAGLKAK 147 (289)
Q Consensus 134 ~lI~~~~~~G~~v~ 147 (289)
++-+.+++.|+++.
T Consensus 65 ~l~~~l~~~Gl~i~ 78 (333)
T 3ktc_A 65 EVKDALKDAGLKAI 78 (333)
T ss_dssp HHHHHHHHHTCEEE
T ss_pred HHHHHHHHcCCeEE
Confidence 78888999999874
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=88.47 E-value=2.4 Score=38.57 Aligned_cols=141 Identities=11% Similarity=0.061 Sum_probs=95.6
Q ss_pred hHHHHHHHHHH-cCCCEEEecCCc---ccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 102 AFKEYVEDCKQ-VGFDTIELNVGS---LEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 102 ~~~~yl~~~k~-lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
.+.++++++-+ -|.+.|=+.-.| ..|+.++|.++++.+.+. | ++.-=.|+ |
T Consensus 25 ~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGv-------g--------------- 81 (293)
T 1f6k_A 25 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD-QIALIAQV-------G--------------- 81 (293)
T ss_dssp HHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEEC-------C---------------
T ss_pred HHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCC-CCeEEEec-------C---------------
Confidence 57888999888 999999886543 579999999999999873 1 11111222 1
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHHh
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVIG 226 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~---~G-~~r~d~v~~ii~ 226 (289)
..+..+.|++++..-++|||.|++=.- -||+. .| ++..+.+.++++
T Consensus 82 -----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 156 (293)
T 1f6k_A 82 -----SVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYK 156 (293)
T ss_dssp -----CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHT
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHHhc
Confidence 114778899999999999999998652 15663 34 677888888874
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 227 RLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 227 ~l~~eklif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
..+|+- |+ .+-.+...+++. +++..+.--.+ -+.+++|..|--|
T Consensus 157 ---~pnIvgiK~s~gd~~~~~~~~~~-~~~f~v~~G~d-~~~~~~l~~G~~G 203 (293)
T 1f6k_A 157 ---NPKVLGVKFTAGDFYLLERLKKA-YPNHLIWAGFD-EMMLPAASLGVDG 203 (293)
T ss_dssp ---STTEEEEEECSCCHHHHHHHHHH-CTTSEEEECCG-GGHHHHHHTTCSE
T ss_pred ---CCCEEEEEECCCCHHHHHHHHHh-CCCeEEEECcH-HHHHHHHHCCCcE
Confidence 345542 44 455666666666 56655543333 3578888877544
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=88.44 E-value=4.6 Score=38.07 Aligned_cols=146 Identities=14% Similarity=0.223 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+.+..|-+.||+.|=|.--. +|.++= .++++.+...|.-|--|+|.= |..+|.. . -.+ .
T Consensus 89 e~i~~ai~~GFtSVMiDgS~--~p~eENi~~Tk~vv~~ah~~gvsVEaELG~v------gg~Ed~v-----~---~~~-~ 151 (323)
T 2isw_A 89 ESVKMAIDLGFSSVMIDASH--HPFDENVRITKEVVAYAHARSVSVEAELGTL------GGIEEDV-----Q---NTV-Q 151 (323)
T ss_dssp HHHHHHHHTTCSEEEECCTT--SCHHHHHHHHHHHHHHHHTTTCEEEEEESCC------------------------C-C
T ss_pred HHHHHHHHcCCCeEEecCCC--CCHHHHHHHHHHHHHHHHHcCCeEEEEeCCc------cCCccCc-----c---ccc-c
Confidence 45777889999999886554 454443 367788888999999999982 1112210 0 000 1
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEec---ccccc--CCCC--ccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhCC
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDS---DDVCK--HADS--LRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYGP 252 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d--~~G~--~r~d~v~~ii~~l~~eklifEAP-~k~qQ~~~I~~fG~ 252 (289)
..||++..+.+++ -|.|.+=+== -|.|. .+-. ++.|.+++|-+.++.-=++==+. -|+..+..|+.||-
T Consensus 152 yTdPeea~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~~~~vpLVlHGgSsvp~~~~~~~~~~gg 228 (323)
T 2isw_A 152 LTEPQDAKKFVEL---TGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTGIPLVMHGSSSVPKDVKDMINKYGG 228 (323)
T ss_dssp CCCHHHHHHHHHH---HCCSEEEECSSCCSSSBCCCC----CCCCHHHHHHHHHHCSCEEECSCCCCCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHH---HCCCEEEEecCccccccCCCCCcccccCHHHHHHHHHHhCCCeEEECCCCCCHHHHHHHHHhcc
Confidence 1268888888774 6888665432 28998 4434 78999999988886443443333 57778889999999
Q ss_pred Cccc--ccCCCCchhhhhhhcc
Q 022982 253 KVNL--FVDHSQVMDLECLRGR 272 (289)
Q Consensus 253 ~VNL--gI~~~eVl~LE~LR~g 272 (289)
++.= ||+.+|+- +|.+.|
T Consensus 229 ~~~~~~Gvp~e~i~--~ai~~G 248 (323)
T 2isw_A 229 KMPDAVGVPIESIV--HAIGEG 248 (323)
T ss_dssp CCTTCBCCCHHHHH--HHHHTT
T ss_pred ccccCCCCCHHHHH--HHHHCC
Confidence 9876 47766653 344444
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=88.41 E-value=1.1 Score=41.22 Aligned_cols=93 Identities=17% Similarity=0.291 Sum_probs=64.3
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHH
Q 022982 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (289)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 192 (289)
-|.++|-|-|| ++....|+.+.++|..|.-.+|..-. ....++.+....+ .....+++|+.++
T Consensus 106 aGa~aVklEgg------~e~~~~I~al~~agipV~gHiGLtPq-------~v~~~ggf~v~gr----t~~~a~~~i~rA~ 168 (264)
T 1m3u_A 106 AGANMVKIEGG------EWLVETVQMLTERAVPVCGHLGLTPQ-------SVNIFGGYKVQGR----GDEAGDQLLSDAL 168 (264)
T ss_dssp TTCSEEECCCS------GGGHHHHHHHHHTTCCEEEEEESCGG-------GHHHHTSSCCCCC----SHHHHHHHHHHHH
T ss_pred cCCCEEEECCc------HHHHHHHHHHHHCCCCeEeeecCCce-------eecccCCeEEEeC----CHHHHHHHHHHHH
Confidence 89999999999 46788999999999888888887321 1111111111000 0112589999999
Q ss_pred HHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 022982 193 RCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 193 ~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
+..+|||+.|.+|+- ..++.++|.+.+++-
T Consensus 169 a~~eAGA~~ivlE~v---------p~~~a~~it~~l~iP 198 (264)
T 1m3u_A 169 ALEAAGAQLLVLECV---------PVELAKRITEALAIP 198 (264)
T ss_dssp HHHHHTCCEEEEESC---------CHHHHHHHHHHCSSC
T ss_pred HHHHCCCcEEEEecC---------CHHHHHHHHHhCCCC
Confidence 999999999999982 245677777766643
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
|---|
Probab=88.37 E-value=6.3 Score=32.87 Aligned_cols=102 Identities=16% Similarity=0.281 Sum_probs=66.3
Q ss_pred hhHHHHHHHhhccc----ccEEEecCccccccChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022982 40 HNVLEDIFESMGQF----VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 40 ~~~~~DlLe~ag~y----ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v--~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
+..+.+.++...++ ++.+-|++|.-.+.| +.|.+.++.++++|+.+ .+ |++++ .++.+ +.+.+
T Consensus 52 ~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~~-~~l~~l~~~~~~~~~~i~i~Tng~~~~-----~~~~~----~~l~~ 121 (245)
T 3c8f_A 52 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQA-EFVRDWFRACKKEGIHTCLDTNGFVRR-----YDPVI----DELLE 121 (245)
T ss_dssp HHHHHHHHGGGHHHHTSTTCEEEEEESCGGGGH-HHHHHHHHHHHTTTCCEEEEECCCCCC-----CCHHH----HHHHH
T ss_pred HHHHHHHHHHhhhhhcCCCCeEEEECCCcCCCH-HHHHHHHHHHHHcCCcEEEEeCCCcCc-----CHHHH----HHHHH
Confidence 44555566555544 578899999988865 56899999999998854 34 64422 11233 33444
Q ss_pred cCCCEEEecCCccc---------CChhHHHHHHHHHHHcCCcccceeee
Q 022982 113 VGFDTIELNVGSLE---------IPEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 113 lGF~~IEISdGti~---------i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
. ++.|-||=-+.+ .+.+...+.|+.+++.|+.+.-.+.+
T Consensus 122 ~-~~~v~isld~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~i~~~~ 169 (245)
T 3c8f_A 122 V-TDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVV 169 (245)
T ss_dssp T-CSEEEEECCCSSHHHHHHHHSSCSHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred h-CCEEEEeCCCCCHHHhhhccCCCHHHHHHHHHHHHhcCCEEEEEEee
Confidence 4 678888754431 34467778999999999865444333
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=88.34 E-value=1.3 Score=42.03 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=98.8
Q ss_pred ccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022982 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (289)
+|.+-+-..+|-++.+ +.+++-++.++++|..|..+ .|.+...+|+.+-+..+.+.+.|.+.|-+.|
T Consensus 101 ~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~--~ed~~r~~~~~~~~~~~~~~~~Ga~~i~l~D 178 (370)
T 3rmj_A 101 KKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFS--CEDALRSEIDFLAEICGAVIEAGATTINIPD 178 (370)
T ss_dssp SEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEE--EETGGGSCHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEe--cCCCCccCHHHHHHHHHHHHHcCCCEEEecC
Confidence 5666666666655432 23455788999999877654 2333445556777888889999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
-.--+.+.+-.++|+.++++ +.. .-.+++.+. . |...-+-.+-..++|||+
T Consensus 179 T~G~~~P~~~~~lv~~l~~~-~~~~~~~~l~~H~H-n-------------------------d~GlAvAN~laAv~aGa~ 231 (370)
T 3rmj_A 179 TVGYSIPYKTEEFFRELIAK-TPNGGKVVWSAHCH-N-------------------------DLGLAVANSLAALKGGAR 231 (370)
T ss_dssp SSSCCCHHHHHHHHHHHHHH-STTGGGSEEEEECB-C-------------------------TTSCHHHHHHHHHHTTCC
T ss_pred ccCCcCHHHHHHHHHHHHHh-CCCcCceEEEEEeC-C-------------------------CCChHHHHHHHHHHhCCC
Confidence 99999999999999999885 111 123555331 1 122236777889999999
Q ss_pred EEEEecc--ccccCCCCccHHHHHHHH
Q 022982 201 MIMIDSD--DVCKHADSLRADIIAKVI 225 (289)
Q Consensus 201 ~ViiEar--GI~d~~G~~r~d~v~~ii 225 (289)
.| ++- |+=+..||.-.+.+-..+
T Consensus 232 ~v--d~tv~GlGeraGN~~lE~vv~~L 256 (370)
T 3rmj_A 232 QV--ECTVNGLGERAGNASVEEIVMAL 256 (370)
T ss_dssp EE--EEBGGGCSSTTCBCBHHHHHHHH
T ss_pred EE--EEeccccCcccccccHHHHHHHH
Confidence 65 664 888899999988765544
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=88.25 E-value=2.5 Score=38.54 Aligned_cols=143 Identities=16% Similarity=0.130 Sum_probs=98.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+ |
T Consensus 21 ~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpviaGv-------g--------------- 77 (297)
T 2rfg_A 21 KALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQG-RVPVIAGA-------G--------------- 77 (297)
T ss_dssp HHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSCBEEEC-------C---------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCC-CCeEEEcc-------C---------------
Confidence 36788899999999999987543 3489999999999999873 2 11111233 1
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHh
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIG 226 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~----~G~~r~d~v~~ii~ 226 (289)
..+..+.|++++..-++|||.|++=.- -||+. .-++..+.+.++++
T Consensus 78 -----~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (297)
T 2rfg_A 78 -----SNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAA 152 (297)
T ss_dssp -----CSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence 114778899999999999999998652 15663 23577888888874
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 227 RLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 227 ~l~~eklif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
. .+|+- |+ ++-.+...+++..++++.+. .-+|-+.+++|..|--|
T Consensus 153 -~--pnIvgiKds~gd~~~~~~~~~~~~~~f~v~-~G~d~~~l~~l~~G~~G 200 (297)
T 2rfg_A 153 -L--PRIVGVKDATTDLARISRERMLINKPFSFL-SGDDMTAIAYNASGGQG 200 (297)
T ss_dssp -S--TTEEEEEECSCCTTHHHHHHTTCCSCCEEE-ESCGGGHHHHHHTTCCE
T ss_pred -C--CCEEEEEeCCCCHHHHHHHHHhcCCCEEEE-eCcHHHHHHHHHCCCCE
Confidence 3 45542 55 46667777787777766553 33455678888877444
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=88.19 E-value=2.6 Score=39.04 Aligned_cols=92 Identities=21% Similarity=0.315 Sum_probs=63.7
Q ss_pred HHHHHcCCCEEEecCCcc-----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 108 EDCKQVGFDTIELNVGSL-----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+..-+.|..+|-|-||.. -+|.++.++-|+.+++.+- .+.|-++- ..|.. +
T Consensus 101 ~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~--~~~~~i~a-------Rtda~---------~ 162 (295)
T 1xg4_A 101 KSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKT--DPDFVIMA-------RTDAL---------A 162 (295)
T ss_dssp HHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCS--STTSEEEE-------EECCH---------H
T ss_pred HHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhcc--CCCcEEEE-------ecHHh---------h
Confidence 333457999999999862 4788888888888888643 23333321 11110 0
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
....++.|++++...+||||.|.+|+. . ..+++.+|.+.++
T Consensus 163 ----~~gl~~ai~ra~ay~eAGAd~i~~e~~--~------~~~~~~~i~~~~~ 203 (295)
T 1xg4_A 163 ----VEGLDAAIERAQAYVEAGAEMLFPEAI--T------ELAMYRQFADAVQ 203 (295)
T ss_dssp ----HHCHHHHHHHHHHHHHTTCSEEEETTC--C------SHHHHHHHHHHHC
T ss_pred ----hcCHHHHHHHHHHHHHcCCCEEEEeCC--C------CHHHHHHHHHHcC
Confidence 123689999999999999999999985 1 3567777777666
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=88.19 E-value=2.5 Score=38.93 Aligned_cols=163 Identities=13% Similarity=0.005 Sum_probs=101.7
Q ss_pred CCceecCCcHHHH-HHHhCCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCC
Q 022982 82 HDVYVSTGDWAEH-LIRNGPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNK 156 (289)
Q Consensus 82 ~gV~v~~GtlfE~-a~~qg~~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~ 156 (289)
.||.+..=|.|-- --.=+.+.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+
T Consensus 13 ~Gv~~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGv---- 88 (316)
T 3e96_A 13 ETISGIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGI---- 88 (316)
T ss_dssp SSEEECCCCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEE----
T ss_pred CceEEeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEe----
Confidence 4665555454411 001112368889999999999999776543 589999999999999884 1011111222
Q ss_pred CCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------cccc
Q 022982 157 SDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCK 211 (289)
Q Consensus 157 ~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d 211 (289)
| . +..+.|++++..-++|||.|++=.- -+|+
T Consensus 89 ---g--------------------~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (316)
T 3e96_A 89 ---G--------------------Y-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYF 144 (316)
T ss_dssp ---C--------------------S-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred ---C--------------------c-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 1 1 3677899999999999999998531 1576
Q ss_pred CCCCccHHHHHHHHhccCCCceE--Eec-CCchhHHHHHHHhCC-Ccc-cccCCCCchhhhhhhcccCC
Q 022982 212 HADSLRADIIAKVIGRLGLEKTM--FEA-TNPRTSEWFIRRYGP-KVN-LFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 212 ~~G~~r~d~v~~ii~~l~~ekli--fEA-P~k~qQ~~~I~~fG~-~VN-LgI~~~eVl~LE~LR~g~~G 275 (289)
..-++..+.+.+++ +.| +|+ =|+ ++-.+...+++..++ +.. +.--.++.+.++.|..|--|
T Consensus 145 ~g~~l~~~~~~~La-~~p--nIvgiKdssgd~~~~~~~~~~~~~~~f~~v~~G~d~~~~~~~l~~G~~G 210 (316)
T 3e96_A 145 KDPEISDRVLVDLA-PLQ--NLVGVKYAINDLPRFAKVVRSIPEEHQIAWICGTAEKWAPFFWHAGAKG 210 (316)
T ss_dssp CCTTSCTHHHHHHT-TCT--TEEEEEECCCCHHHHHHHHTTSCGGGCCEEEETTCTTTHHHHHHHTCCE
T ss_pred CCCCCCHHHHHHHH-cCC--CEEEEEeCCCCHHHHHHHHHhcCCCCceEEEeCChHHHHHHHHHCCCCE
Confidence 53466777777776 343 332 233 456666777777776 555 44344455556666655433
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=88.17 E-value=1.5 Score=40.36 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=87.3
Q ss_pred HHHHHHhhcccccEEEecCccccc-cCh-hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022982 43 LEDIFESMGQFVDGLKFSGGSHSL-MPK-PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (289)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GTs~l-~p~-~~l~eKI~l~~~-~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (289)
+-+.|..+| ||.+=.||+.+.- .|. ..-.+.++.+++ -++.+. .| .++ .+=++.+.+.|.+.|-
T Consensus 33 i~~~L~~~G--v~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~--~l-----~~~----~~~i~~a~~~g~~~v~ 99 (307)
T 1ydo_A 33 WINQLSRTG--LSYIEITSFVHPKWIPALRDAIDVAKGIDREKGVTYA--AL-----VPN----QRGLENALEGGINEAC 99 (307)
T ss_dssp HHHHHHTTT--CSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTCEEE--EE-----CCS----HHHHHHHHHHTCSEEE
T ss_pred HHHHHHHcC--CCEEEECCCcCcccccccCCHHHHHHHhhhcCCCeEE--EE-----eCC----HHhHHHHHhCCcCEEE
Confidence 344556666 7888888765431 110 012233333222 133222 12 233 2236777778999999
Q ss_pred ecCCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHH
Q 022982 120 LNVGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (289)
Q Consensus 120 ISdGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (289)
|...+-++ +. +.-.+.|+.+++.|++|-..+..-+ +...+ +..|++.+
T Consensus 100 i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~-----~~~~~---------------~~~~~~~~ 159 (307)
T 1ydo_A 100 VFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVF-----GCPYE---------------KDVPIEQV 159 (307)
T ss_dssp EEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTT-----CBTTT---------------BCCCHHHH
T ss_pred EEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEe-----cCCcC---------------CCCCHHHH
Confidence 97644332 22 3346789999999998743322211 11111 11268999
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
++.+++..++||+.|. |.|..|-..+..+.++++.+
T Consensus 160 ~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 195 (307)
T 1ydo_A 160 IRLSEALFEFGISELS-----LGDTIGAANPAQVETVLEAL 195 (307)
T ss_dssp HHHHHHHHHHTCSCEE-----EECSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEE-----EcCCCCCcCHHHHHHHHHHH
Confidence 9999999999999664 56888888888877777543
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=88.12 E-value=1.6 Score=40.86 Aligned_cols=105 Identities=21% Similarity=0.349 Sum_probs=64.3
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCc-------------ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccc
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGS-------------LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDR 165 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGt-------------i~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~ 165 (289)
|+.+.+..+.+++.|||.|||+-|+ +.-..+.-.++|+.+++. ++ | +++|... | -+|.
T Consensus 69 p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~---P-V~vKiR~---g-~~~~ 140 (350)
T 3b0p_A 69 PKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRV---P-VTVKMRL---G-LEGK 140 (350)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSS---C-EEEEEES---C-BTTC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCC---c-eEEEEec---C-cCcc
Confidence 3467777778888999999999652 233445556677777763 32 2 5555321 1 0110
Q ss_pred ccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc----ccccC----CCCccHHHHHHHHhcc
Q 022982 166 AFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD----DVCKH----ADSLRADIIAKVIGRL 228 (289)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar----GI~d~----~G~~r~d~v~~ii~~l 228 (289)
.+.++.++.++...++|++.|+|-+| |+.-. ......+.+.++.+.+
T Consensus 141 ----------------~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~ 195 (350)
T 3b0p_A 141 ----------------ETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDF 195 (350)
T ss_dssp ----------------CCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHC
T ss_pred ----------------ccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhC
Confidence 13566788888888999999999987 22111 1123566777776655
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=88.08 E-value=2.9 Score=37.90 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=96.4
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+ |
T Consensus 21 ~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pviaGv-------g--------------- 77 (289)
T 2yxg_A 21 DGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNG-RVQVIAGA-------G--------------- 77 (289)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEEC-------C---------------
T ss_pred HHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEeC-------C---------------
Confidence 36788889989999999988654 3479999999999999873 2 11111233 1
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHh
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIG 226 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~----~G~~r~d~v~~ii~ 226 (289)
..+..+.|++++..-++|||.|++=.- -||+. .-++..+.+.++++
T Consensus 78 -----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (289)
T 2yxg_A 78 -----SNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLLAE 152 (289)
T ss_dssp -----CSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHH
Confidence 114778899999999999999998652 15663 23577888888873
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 227 RLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 227 ~l~~eklif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
+. .+|+- |+ ++-.+...+++.. +..+ ..-+|-+.+++|..|--|
T Consensus 153 ~~--pnivgiK~s~gd~~~~~~~~~~~--~f~v-~~G~d~~~~~~l~~G~~G 199 (289)
T 2yxg_A 153 EY--SNISAVKEANPNLSQVSELIHDA--KITV-LSGNDELTLPIIALGGKG 199 (289)
T ss_dssp HC--TTEEEEEECCSCTHHHHHHHHHT--CSEE-EESCGGGHHHHHHTTCCE
T ss_pred hC--CCEEEEEeCCCCHHHHHHHHHhC--CeEE-EECcHHHHHHHHHCCCCE
Confidence 44 44532 55 4566666777765 3333 444566788888877444
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=88.07 E-value=2.8 Score=38.35 Aligned_cols=142 Identities=17% Similarity=0.120 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+ |
T Consensus 32 ~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-rvpViaGv-------g--------------- 88 (303)
T 2wkj_A 32 ASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKG-KIKLIAHV-------G--------------- 88 (303)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-TSEEEEEC-------C---------------
T ss_pred HHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEec-------C---------------
Confidence 36888999999999999988654 3489999999999999873 1 11111122 1
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc---------------------c-----cccC---CC-CccHHHHHHHH
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---------------------D-----VCKH---AD-SLRADIIAKVI 225 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar---------------------G-----I~d~---~G-~~r~d~v~~ii 225 (289)
..+..+.|++++..-++|||.|++=.- + ||+. .| ++..+.+.+++
T Consensus 89 -----~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l~~~~~~~La 163 (303)
T 2wkj_A 89 -----CVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV 163 (303)
T ss_dssp -----CSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCCCHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 114778899999999999999998652 1 3442 23 46677777776
Q ss_pred hccCCCceEE--ecC-CchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 226 GRLGLEKTMF--EAT-NPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 226 ~~l~~eklif--EAP-~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
+ ..+|+- |+. +-.+...+++. ++++.+.--. |-+.+++|..|--|
T Consensus 164 ~---~pnIvgiK~s~gd~~~~~~~~~~-~~~f~v~~G~-d~~~~~~l~~G~~G 211 (303)
T 2wkj_A 164 T---LPGVGALXQTSGDLYQMEQIRRE-HPDLVLYNGY-DNIFASGLLAGADG 211 (303)
T ss_dssp T---STTEEEEEECCCCHHHHHHHHHH-CTTCEEEECC-GGGHHHHHHHTCCE
T ss_pred c---CCCEEEEeCCCCCHHHHHHHHHh-CCCeEEEeCc-HHHHHHHHHCCCCE
Confidence 3 244432 443 44455555555 5554443323 33467777765433
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=88.02 E-value=2.1 Score=39.81 Aligned_cols=92 Identities=11% Similarity=0.147 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
..++++.|.+.|.+.|-|.+-.-++ +.-.+.|+.+++.|+.| ++...+.. ..
T Consensus 95 ~~~~i~~a~~aGvd~v~I~~~~s~~--~~~~~~i~~ak~~G~~v--~~~~~~a~------------------------~~ 146 (345)
T 1nvm_A 95 SVHDLKNAYQAGARVVRVATHCTEA--DVSKQHIEYARNLGMDT--VGFLMMSH------------------------MI 146 (345)
T ss_dssp CHHHHHHHHHHTCCEEEEEEETTCG--GGGHHHHHHHHHHTCEE--EEEEESTT------------------------SS
T ss_pred cHHHHHHHHhCCcCEEEEEEeccHH--HHHHHHHHHHHHCCCEE--EEEEEeCC------------------------CC
Confidence 4678999999999999997422221 45568999999999875 44442210 11
Q ss_pred cHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~ 227 (289)
+++.+.+.++...++||+.|- |.|-.|-..+..+.++++.
T Consensus 147 ~~e~~~~ia~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~ 186 (345)
T 1nvm_A 147 PAEKLAEQGKLMESYGATCIY-----MADSGGAMSMNDIRDRMRA 186 (345)
T ss_dssp CHHHHHHHHHHHHHHTCSEEE-----EECTTCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEE-----ECCCcCccCHHHHHHHHHH
Confidence 588899999999999999764 5677777777777766643
|
| >3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=88.02 E-value=1.7 Score=38.78 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cCChhHHHHHHHHHHHcCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
.+++.++.++++||+.||+....- .....+..++-+.+++.|+++.+
T Consensus 30 ~~~~~l~~~a~~G~~~VEl~~~~~~~~~~~~~~~~~~~l~~~GL~v~~ 77 (303)
T 3l23_A 30 DVAANLRKVKDMGYSKLELAGYGKGAIGGVPMMDFKKMAEDAGLKIIS 77 (303)
T ss_dssp CHHHHHHHHHHTTCCEEEECCEETTEETTEEHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHcCCCEEEeccccCcccCCCCHHHHHHHHHHcCCeEEE
Confidence 699999999999999999985211 02233456777888999999754
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=87.96 E-value=2.5 Score=38.22 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 178 (289)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-=.|+ +|+ | .
T Consensus 20 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~gvi--~Gv-------g--~--------------- 73 (286)
T 2r91_A 20 LFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARRVI--VQV-------A--S--------------- 73 (286)
T ss_dssp HHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSSEE--EEC-------C--C---------------
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCEE--Eee-------C--C---------------
Confidence 67888999999999999886543 47999999999999988411111 222 1 0
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.+..+.|++++..-++|||.|++=.
T Consensus 74 ---~~t~~ai~la~~A~~~Gadavlv~~ 98 (286)
T 2r91_A 74 ---LNADEAIALAKYAESRGAEAVASLP 98 (286)
T ss_dssp ---SSHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1377889999999999999999854
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=87.83 E-value=2.4 Score=38.26 Aligned_cols=77 Identities=3% Similarity=-0.043 Sum_probs=47.1
Q ss_pred hHHHHHHHhhccc-cc---EEEecCcccc-------ccChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCchHHH
Q 022982 41 NVLEDIFESMGQF-VD---GLKFSGGSHS-------LMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSAFKE 105 (289)
Q Consensus 41 ~~~~DlLe~ag~y-ID---~lKfg~GTs~-------l~p~~~l~eKI~l~~~~-gV~v~~---GtlfE~a~~qg~~~~~~ 105 (289)
..+.+..+.+-++ +| ++=+.++|-. -.+.+.+.+.++-.++. ++++.- .+| ..+.+.+
T Consensus 106 ~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~~-------~~~~~~~ 178 (314)
T 2e6f_A 106 EENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYF-------DIAHFDT 178 (314)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCCC-------CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCCC-------CHHHHHH
Confidence 3444443333333 46 6666665332 22556677888877765 654432 122 1125777
Q ss_pred HHHHHHHcC-CCEEEecCCc
Q 022982 106 YVEDCKQVG-FDTIELNVGS 124 (289)
Q Consensus 106 yl~~~k~lG-F~~IEISdGt 124 (289)
+.+.+.+.| .|.|-+++.+
T Consensus 179 ~a~~~~~aG~~d~i~v~~~~ 198 (314)
T 2e6f_A 179 AAAVLNEFPLVKFVTCVNSV 198 (314)
T ss_dssp HHHHHHTCTTEEEEEECCCE
T ss_pred HHHHHHhcCCceEEEEeCCC
Confidence 888999999 9999999977
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=87.81 E-value=0.61 Score=43.55 Aligned_cols=121 Identities=19% Similarity=0.291 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhC-------CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc----C--ChhHHHHHHH
Q 022982 71 FIEEVVKRAHQH-------DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE----I--PEETLLRYVR 137 (289)
Q Consensus 71 ~l~eKI~l~~~~-------gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~----i--~~~~r~~lI~ 137 (289)
.+.|.|+-.++. +|++++..|.+--+ ..+...++.+.+.+.|.|+|+||+|... + ++.....+++
T Consensus 204 ~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~--~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ 281 (349)
T 3hgj_A 204 FPLQVAQAVREVVPRELPLFVRVSATDWGEGGW--SLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFAD 281 (349)
T ss_dssp HHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSC--CHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccccccCCCC--CHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHH
Confidence 456666666653 34566643332100 0113445667777889999999987542 1 2323456677
Q ss_pred HHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc-CcEEEEeccccccCCCCc
Q 022982 138 LVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHADSL 216 (289)
Q Consensus 138 ~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG-A~~ViiEarGI~d~~G~~ 216 (289)
.+++. +++. .--+| .+. | .+.+++.|++| ||.|++ +|.+..
T Consensus 282 ~ir~~-------~~iP--Vi~~G--------gi~-----------t----~e~a~~~l~~G~aD~V~i-GR~~la----- 323 (349)
T 3hgj_A 282 AVRKR-------VGLR--TGAVG--------LIT-----------T----PEQAETLLQAGSADLVLL-GRVLLR----- 323 (349)
T ss_dssp HHHHH-------HCCE--EEECS--------SCC-----------C----HHHHHHHHHTTSCSEEEE-STHHHH-----
T ss_pred HHHHH-------cCce--EEEEC--------CCC-----------C----HHHHHHHHHCCCceEEEe-cHHHHh-----
Confidence 77763 2211 10011 111 1 46677889999 999998 676653
Q ss_pred cHHHHHHHHhccCCC
Q 022982 217 RADIIAKVIGRLGLE 231 (289)
Q Consensus 217 r~d~v~~ii~~l~~e 231 (289)
+.|++.++.+.++.+
T Consensus 324 nPdl~~k~~~~l~~~ 338 (349)
T 3hgj_A 324 DPYFPLRAAKALGVA 338 (349)
T ss_dssp CTTHHHHHHHHTTCC
T ss_pred CchHHHHHHHHCCCC
Confidence 257889999888843
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=3.6 Score=37.58 Aligned_cols=143 Identities=14% Similarity=0.148 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+ |
T Consensus 33 ~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-rvpViaGv-------g--------------- 89 (301)
T 1xky_A 33 AKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDK-RVPVIAGT-------G--------------- 89 (301)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEEC-------C---------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CceEEeCC-------C---------------
Confidence 36888899999999999988654 3489999999999999873 1 11111222 1
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHh
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIG 226 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~----~G~~r~d~v~~ii~ 226 (289)
..+..+.|++++..-++|||.|++=.- -||+. .-++..+.+.++++
T Consensus 90 -----~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 164 (301)
T 1xky_A 90 -----SNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE 164 (301)
T ss_dssp -----CSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence 114778899999999999999998652 15663 23577888888874
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 227 RLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 227 ~l~~eklif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
..+|+- |+ .+-.+...+++..+++..+. .-+|-+.+++|..|--|
T Consensus 165 ---~pnIvgiKdssgd~~~~~~~~~~~~~~f~v~-~G~d~~~l~~l~~G~~G 212 (301)
T 1xky_A 165 ---IENIVAIKDAGGDVLTMTEIIEKTADDFAVY-SGDDGLTLPAMAVGAKG 212 (301)
T ss_dssp ---STTEEEEEECSSCHHHHHHHHHHSCTTCEEE-ESSGGGHHHHHHTTCCE
T ss_pred ---CCCEEEEEcCCCCHHHHHHHHHhcCCCeEEE-ECcHHHHHHHHHcCCCE
Confidence 345543 44 46667777888888776654 33455688888877544
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=87.68 E-value=2.3 Score=37.41 Aligned_cols=144 Identities=13% Similarity=0.090 Sum_probs=85.1
Q ss_pred hhHHHHHHHhhcccccEEEecCccccccCh---hHHHHHHHHHHhCCceecCC----cHHHHHHHh--CCchHHHHHHHH
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPK---PFIEEVVKRAHQHDVYVSTG----DWAEHLIRN--GPSAFKEYVEDC 110 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~l~p~---~~l~eKI~l~~~~gV~v~~G----tlfE~a~~q--g~~~~~~yl~~~ 110 (289)
....+..++.-.+.||+. +-.|+. ..+ +.+++-++++|++|+++... |. + . .. .++.+.+..+.+
T Consensus 102 ~~~v~~a~~~Ga~~v~~~-l~~~~~--~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~-~-l-~~~~~~~~~~~~a~~a 175 (273)
T 2qjg_A 102 VTTVEEAIRMGADAVSIH-VNVGSD--EDWEAYRDLGMIAETCEYWGMPLIAMMYPRGK-H-I-QNERDPELVAHAARLG 175 (273)
T ss_dssp CSCHHHHHHTTCSEEEEE-EEETST--THHHHHHHHHHHHHHHHHHTCCEEEEEEECST-T-C-SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEE-EecCCC--CHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCc-c-c-CCCCCHhHHHHHHHHH
Confidence 447788888777777552 222322 111 25788899999999866542 11 0 0 00 112455555888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
.+.|.|+|=+|.. .+ .++++.+++. ...++..=|+. ..+.+++.+
T Consensus 176 ~~~Gad~i~~~~~---~~----~~~l~~i~~~~~ipvva~GGi~---------------------------~~~~~~~~~ 221 (273)
T 2qjg_A 176 AELGADIVKTSYT---GD----IDSFRDVVKGCPAPVVVAGGPK---------------------------TNTDEEFLQ 221 (273)
T ss_dssp HHTTCSEEEECCC---SS----HHHHHHHHHHCSSCEEEECCSC---------------------------CSSHHHHHH
T ss_pred HHcCCCEEEECCC---CC----HHHHHHHHHhCCCCEEEEeCCC---------------------------CCCHHHHHH
Confidence 9999999999952 22 2445555442 22222222220 013677888
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
.++..+++||+.|++ ++.|+.+.. + ...+.++.+
T Consensus 222 ~~~~~~~~Ga~gv~v-g~~i~~~~~-~-~~~~~~l~~ 255 (273)
T 2qjg_A 222 MIKDAMEAGAAGVAV-GRNIFQHDD-V-VGITRAVCK 255 (273)
T ss_dssp HHHHHHHHTCSEEEC-CHHHHTSSS-H-HHHHHHHHH
T ss_pred HHHHHHHcCCcEEEe-eHHhhCCCC-H-HHHHHHHHH
Confidence 899999999999999 888887652 2 334444443
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=87.61 E-value=4.8 Score=36.46 Aligned_cols=145 Identities=11% Similarity=0.082 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.++++++++-+-|.+.|=+.-.|- .|+.++|.++++.+.+. +=++.-=+|+ |
T Consensus 22 ~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv-------g---------------- 78 (291)
T 3tak_A 22 KSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGT-------G---------------- 78 (291)
T ss_dssp HHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-------C----------------
T ss_pred HHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeC-------C----------------
Confidence 3678889999999999996654433 78999999999999884 1011111122 1
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~----~G~~r~d~v~~ii~~ 227 (289)
..+..+.|++++..-++|||.|++=.- -+|+. .-++..+.+.+++ +
T Consensus 79 ----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La-~ 153 (291)
T 3tak_A 79 ----ANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLA-E 153 (291)
T ss_dssp ----CSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHT-T
T ss_pred ----CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHHHH-c
Confidence 114788899999999999999998762 15653 2367778888887 3
Q ss_pred cCCCceE--Eec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCCC
Q 022982 228 LGLEKTM--FEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 228 l~~ekli--fEA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G~ 276 (289)
.| +|+ =|+ .+..+...++++.+++..+.- -+|-+.+++|..|--|-
T Consensus 154 ~p--nivgiK~ssgd~~~~~~~~~~~~~~f~v~~-G~d~~~~~~l~~G~~G~ 202 (291)
T 3tak_A 154 IP--NIVGIKDATGDVPRGKALIDALNGKMAVYS-GDDETAWELMLLGADGN 202 (291)
T ss_dssp ST--TEEEEEECSCCHHHHHHHHHHHTTSSEEEE-CCHHHHHHHHHTTCCEE
T ss_pred CC--CEEEEEeCCCCHHHHHHHHHHcCCCeEEEE-CcHHHHHHHHHCCCCEE
Confidence 43 332 244 566777788888888877743 33556788888775443
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=87.54 E-value=2.5 Score=38.36 Aligned_cols=142 Identities=11% Similarity=0.080 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=.|+ |
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pviaGv-------g---------------- 78 (292)
T 2ojp_A 23 SLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADG-RIPVIAGT-------G---------------- 78 (292)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEEC-------C----------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCC-CCcEEEec-------C----------------
Confidence 6788888888899999988654 3489999999999999873 2 11111233 1
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~---~G-~~r~d~v~~ii~~ 227 (289)
..+..+.|++++..-++|||.|++=.- -||+. .| ++..+.+.++++
T Consensus 79 ----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~- 153 (292)
T 2ojp_A 79 ----ANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAK- 153 (292)
T ss_dssp ----CSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHHHT-
T ss_pred ----CccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHHHHHHc-
Confidence 114778899999999999999998652 15663 23 577888888874
Q ss_pred cCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 228 LGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 228 l~~eklif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
..+|+- |+ ++-.+...+++..++++.+. .-+|-+.+++|..|--|
T Consensus 154 --~pnivgiK~s~gd~~~~~~~~~~~~~~f~v~-~G~d~~~~~~l~~G~~G 201 (292)
T 2ojp_A 154 --VKNIIGIXEATGNLTRVNQIKELVSDDFVLL-SGDDASALDFMQYGGHG 201 (292)
T ss_dssp --STTEEEC-CCSCCTHHHHHHHTTSCTTSBCE-ESCGGGHHHHHHTTCCE
T ss_pred --CCCEEEEeCCCCCHHHHHHHHHhcCCCEEEE-ECcHHHHHHHHHCCCcE
Confidence 345543 44 45667777777777766654 23345568888877444
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=87.50 E-value=3.1 Score=38.14 Aligned_cols=144 Identities=11% Similarity=0.115 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=.|+ |
T Consensus 33 ~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~g-rvpViaGv-------g--------------- 89 (306)
T 1o5k_A 33 ESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDG-KIPVIVGA-------G--------------- 89 (306)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTT-SSCEEEEC-------C---------------
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCC-CCeEEEcC-------C---------------
Confidence 36888999999999999988654 3489999999999999873 1 11111222 1
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHHh
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVIG 226 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~---~G-~~r~d~v~~ii~ 226 (289)
..+..+.|++++..-++|||.|++=.- -||+. .| ++..+.+.++++
T Consensus 90 -----~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 164 (306)
T 1o5k_A 90 -----TNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAA 164 (306)
T ss_dssp -----CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred -----CccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHH
Confidence 114778899999999999999998652 15663 23 678888888874
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCC---CcccccCCCCchhhhhhhcccCC
Q 022982 227 RLGLEKTMF--EA-TNPRTSEWFIRRYGP---KVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 227 ~l~~eklif--EA-P~k~qQ~~~I~~fG~---~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
+. .+|+- |+ ++-.+...+++..++ ++.+. .-+|-+.+++|..|--|
T Consensus 165 ~~--pnIvgiKdssgd~~~~~~~~~~~~~~~~~f~v~-~G~d~~~l~~l~~G~~G 216 (306)
T 1o5k_A 165 DL--KNVVGIXEANPDIDQIDRTVSLTKQARSDFMVW-SGNDDRTFYLLCAGGDG 216 (306)
T ss_dssp HC--TTEEEEEECCCCHHHHHHHHHHHHHHCTTCEEE-ESSGGGHHHHHHHTCCE
T ss_pred hC--CCEEEEeCCCCCHHHHHHHHHhcCCCCCcEEEE-ECcHHHHHHHHHCCCCE
Confidence 34 45543 44 466677778887765 65553 33455688888876444
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=87.46 E-value=2.5 Score=39.67 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc--c----------------cCChhHHHH----HHHHHHHcCCcccce--eeeecCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS--L----------------EIPEETLLR----YVRLVKSAGLKAKPK--FAVMFNKS 157 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt--i----------------~i~~~~r~~----lI~~~~~~G~~v~~E--~g~k~~~~ 157 (289)
.|-+--+.|++.|||.|||.-+. + -=+.+.|.| +|+.+++. +-++ +++|..
T Consensus 159 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~a---vg~d~pV~vRis-- 233 (363)
T 3l5l_A 159 DFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREV---WPENLPLTARFG-- 233 (363)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTT---SCTTSCEEEEEE--
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHH---cCCCceEEEEec--
Confidence 34444456778899999998542 1 013455654 55555553 1111 455432
Q ss_pred CCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccc
Q 022982 158 DIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 208 (289)
Q Consensus 158 evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarG 208 (289)
|..|...+..+.++.++.++..-++|+++|-+=+.+
T Consensus 234 ---------------~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~ 269 (363)
T 3l5l_A 234 ---------------VLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGF 269 (363)
T ss_dssp ---------------EECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ---------------chhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 222222221257888999999999999999886543
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=87.37 E-value=4 Score=37.23 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=98.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
+.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. |-++.-=+|+ |
T Consensus 28 ~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGv-------g--------------- 85 (301)
T 3m5v_A 28 QSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGA-------G--------------- 85 (301)
T ss_dssp HHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEEC-------C---------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeC-------C---------------
Confidence 468889999999999999775433 479999999999999884 2011111122 1
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHh
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIG 226 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~----~G~~r~d~v~~ii~ 226 (289)
..+..+.|++++..-++|||.|++=.- -||+. .-++..+.+.++++
T Consensus 86 -----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 160 (301)
T 3m5v_A 86 -----SNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFR 160 (301)
T ss_dssp -----CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHh
Confidence 114778899999999999999999762 15653 34677888888875
Q ss_pred ccC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 227 RLG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 227 ~l~-~eklifEAP~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
..| +-=+=...++-.+...+++.. +++.+. .-+|-+.+++|..|--|
T Consensus 161 ~~pnivgiKdssgd~~~~~~~~~~~-~~f~v~-~G~d~~~~~~l~~G~~G 208 (301)
T 3m5v_A 161 DCENIYGVKEASGNIDKCVDLLAHE-PRMMLI-SGEDAINYPILSNGGKG 208 (301)
T ss_dssp HCTTEEEEEECSSCHHHHHHHHHHC-TTSEEE-ECCGGGHHHHHHTTCCE
T ss_pred cCCCEEEEEeCCCCHHHHHHHHHhC-CCeEEE-EccHHHHHHHHHcCCCE
Confidence 323 111112345667777788887 776664 33445578888877444
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=87.04 E-value=6 Score=40.90 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=101.5
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceec-----CCcHHHHHHHh--CCchHHHHHHHHHHcCCCEEEecCCcc
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----TGDWAEHLIRN--GPSAFKEYVEDCKQVGFDTIELNVGSL 125 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~-----~GtlfE~a~~q--g~~~~~~yl~~~k~lGF~~IEISdGti 125 (289)
=+|.+-+-..++ .-+.++.-++.++++|..+. +|.| |-.... +++.+-+..+.+.+.|.+.|=|-|-.-
T Consensus 210 Gvd~irIf~s~n---~l~~l~~~i~~ak~~G~~v~~~i~~~~d~-~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT~G 285 (718)
T 3bg3_A 210 GMDVFRVFDSLN---YLPNMLLGMEAAGSAGGVVEAAISYTGDV-ADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAG 285 (718)
T ss_dssp TCCEEEEECSSC---CHHHHHHHHHHHHTTTSEEEEEEECCSCT-TCTTCCTTCHHHHHHHHHHHHHHTCSEEEEECTTS
T ss_pred CcCEEEEEecHH---HHHHHHHHHHHHHHcCCeEEEEEEeeccc-cCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCC
Confidence 478887776444 45689999999999997642 3333 322211 223455666677789999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEe
Q 022982 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 126 ~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiE 205 (289)
-+.+.+-.++|+.++++ +. ...+++.+. . | ...-+-..-..++|||+.|=.=
T Consensus 286 ~~~P~~v~~lV~~lk~~-~p-~~~I~~H~H-n------d-------------------~GlAvANslaAveAGa~~VD~t 337 (718)
T 3bg3_A 286 LLKPTACTMLVSSLRDR-FP-DLPLHIHTH-D------T-------------------SGAGVAAMLACAQAGADVVDVA 337 (718)
T ss_dssp CCCHHHHHHHHHHHHHH-ST-TCCEEEECC-C------T-------------------TSCHHHHHHHHHHTTCSEEEEB
T ss_pred CcCHHHHHHHHHHHHHh-CC-CCeEEEEEC-C------C-------------------ccHHHHHHHHHHHhCCCEEEec
Confidence 99999999999999985 21 223555331 1 1 2223677778899999965333
Q ss_pred ccccccCCCCccHHHHHHHHhccCCC
Q 022982 206 SDDVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 206 arGI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
-.|+=...||...+.+-..+...+.+
T Consensus 338 i~GlGertGN~~lE~vv~~L~~~g~~ 363 (718)
T 3bg3_A 338 ADSMSGMTSQPSMGALVACTRGTPLD 363 (718)
T ss_dssp CGGGCSTTSCCBHHHHHHHHTTSTTC
T ss_pred CcccccccCchhHHHHHHHHHhcCCC
Confidence 35888899999988887777666543
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=87.04 E-value=2.4 Score=37.46 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=73.8
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
+.+.+++.- .|++=+ +++.+.+++.+++-++.+|++|+.+.... ... +..+.+.+.|+|+|=++
T Consensus 93 ~i~~~~~aG---ad~I~l--~~~~~~~p~~l~~~i~~~~~~g~~v~~~v----------~t~-eea~~a~~~Gad~Ig~~ 156 (229)
T 3q58_A 93 DVDALAQAG---ADIIAF--DASFRSRPVDIDSLLTRIRLHGLLAMADC----------STV-NEGISCHQKGIEFIGTT 156 (229)
T ss_dssp HHHHHHHHT---CSEEEE--ECCSSCCSSCHHHHHHHHHHTTCEEEEEC----------SSH-HHHHHHHHTTCSEEECT
T ss_pred HHHHHHHcC---CCEEEE--CccccCChHHHHHHHHHHHHCCCEEEEec----------CCH-HHHHHHHhCCCCEEEec
Confidence 445554443 455533 34444444679999999999999877641 012 22345678999999543
Q ss_pred C-Cccc---CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHc
Q 022982 122 V-GSLE---IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (289)
Q Consensus 122 d-Gti~---i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeA 197 (289)
. |... ....+ .++++++++.+..|..|-|+.. .+.+++.+++
T Consensus 157 ~~g~t~~~~~~~~~-~~li~~l~~~~ipvIA~GGI~t---------------------------------~~d~~~~~~~ 202 (229)
T 3q58_A 157 LSGYTGPITPVEPD-LAMVTQLSHAGCRVIAEGRYNT---------------------------------PALAANAIEH 202 (229)
T ss_dssp TTTSSSSCCCSSCC-HHHHHHHHTTTCCEEEESSCCS---------------------------------HHHHHHHHHT
T ss_pred CccCCCCCcCCCCC-HHHHHHHHHcCCCEEEECCCCC---------------------------------HHHHHHHHHc
Confidence 2 2211 11122 3677777776777777777721 3556677899
Q ss_pred cCcEEEEecccccc
Q 022982 198 GADMIMIDSDDVCK 211 (289)
Q Consensus 198 GA~~ViiEarGI~d 211 (289)
||+-|+| +..|++
T Consensus 203 GadgV~V-Gsai~~ 215 (229)
T 3q58_A 203 GAWAVTV-GSAITR 215 (229)
T ss_dssp TCSEEEE-CHHHHC
T ss_pred CCCEEEE-chHhcC
Confidence 9999999 555664
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=86.92 E-value=5.5 Score=37.24 Aligned_cols=143 Identities=11% Similarity=0.090 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ++.-=+|+ |
T Consensus 53 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g-rvpViaGv-------g---------------- 108 (343)
T 2v9d_A 53 GTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDR-RVPVLIGT-------G---------------- 108 (343)
T ss_dssp HHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEEC-------C----------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEec-------C----------------
Confidence 67888888889999999886543 579999999999999874 1 11111232 1
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~---~G-~~r~d~v~~ii~~ 227 (289)
..+..+.|++++..-++|||.|++=.- -||+. .| ++..+.+.+++++
T Consensus 109 ----~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~ 184 (343)
T 2v9d_A 109 ----GTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADS 184 (343)
T ss_dssp ----SSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHHHh
Confidence 114788899999999999999998652 15664 23 6788899988744
Q ss_pred cCCCceEE--ec-CCchhHHHHHHHhC---CCcccccCCCCchhhhhhhcccCC
Q 022982 228 LGLEKTMF--EA-TNPRTSEWFIRRYG---PKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 228 l~~eklif--EA-P~k~qQ~~~I~~fG---~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
. .+|+- |+ .+-.+...+++..+ +++.+. .-+|-+.+++|..|--|
T Consensus 185 ~--pnIvgiKdssgd~~~~~~l~~~~~~~~~~f~v~-~G~D~~~l~~l~~Ga~G 235 (343)
T 2v9d_A 185 R--SNIIGIKDTIDSVAHLRSMIHTVKGAHPHFTVL-CGYDDHLFNTLLLGGDG 235 (343)
T ss_dssp C--TTEEEEEECCSCHHHHHHHHHHHHHHCTTCEEE-ESSGGGHHHHHHTTCCE
T ss_pred C--CCEEEEEeCCCCHHHHHHHHHhcCCCCCCEEEE-ECcHHHHHHHHHCCCCE
Confidence 4 34432 55 45667777888887 666654 33455678999877433
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=86.82 E-value=2.6 Score=37.94 Aligned_cols=79 Identities=15% Similarity=0.051 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHcCCC-EEEecCCcc------c--CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022982 102 AFKEYVEDCKQVGFD-TIELNVGSL------E--IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~-~IEISdGti------~--i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 172 (289)
.+.+..+.+.+.||| +|||+-++= . -+.+...++|+.+++.= -+| +.+|-.
T Consensus 107 ~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~--~~P-v~vKi~----------------- 166 (311)
T 1jub_A 107 ENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF--TKP-LGVKLP----------------- 166 (311)
T ss_dssp HHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC--CSC-EEEEEC-----------------
T ss_pred HHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc--CCC-EEEEEC-----------------
Confidence 455666677788999 999975421 1 25666778898888751 122 444431
Q ss_pred cCCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 173 ~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
|. | |.+++.+.++...++||+.|++-.+
T Consensus 167 ~~-~------~~~~~~~~a~~~~~~G~d~i~v~~~ 194 (311)
T 1jub_A 167 PY-F------DLVHFDIMAEILNQFPLTYVNSVNS 194 (311)
T ss_dssp CC-C------SHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred CC-C------CHHHHHHHHHHHHHcCCcEEEecCC
Confidence 00 1 3667778889999999999998765
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=86.69 E-value=3.1 Score=36.27 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=74.5
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
.+.|++.|.|+|-|-+---.+|.++-.++++.+++.|+.+..+++-.
T Consensus 75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~~~--------------------------------- 121 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNNI--------------------------------- 121 (219)
T ss_dssp HHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEESSS---------------------------------
T ss_pred HHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeCCc---------------------------------
Confidence 79999999999999555446888888999999999999999888651
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCC----CccH---HHHHHHHhccC-CCceEEecCCc-hhHHHHHHHhCCCccc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHAD----SLRA---DIIAKVIGRLG-LEKTMFEATNP-RTSEWFIRRYGPKVNL 256 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G----~~r~---d~v~~ii~~l~-~eklifEAP~k-~qQ~~~I~~fG~~VNL 256 (289)
...++-.+.|+.+|=+|.+-... .| .... +.+.++++.+. --.++-|---+ ..+...+...|.|.=|
T Consensus 122 --~e~~~~~~~~~~~i~~~~~~~iG-tG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvl 197 (219)
T 2h6r_A 122 --NTSKAVAALSPDCIAVEPPELIG-TGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVL 197 (219)
T ss_dssp --HHHHHHTTTCCSEEEECCCC---------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEE
T ss_pred --hHHHHHHhCCCCEEEEEeccccc-cCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEE
Confidence 01122345588888899872211 12 1111 23334455554 23567777654 5777778888877655
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=86.45 E-value=2.6 Score=38.30 Aligned_cols=77 Identities=21% Similarity=0.128 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 178 (289)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-=.|+ .|+ | .
T Consensus 21 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~gvi--aGv-------g--~--------------- 74 (293)
T 1w3i_A 21 KLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNKII--FQV-------G--G--------------- 74 (293)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSCEE--EEC-------C--C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCCEE--Eec-------C--C---------------
Confidence 67888899899999999886543 57999999999999998411011 222 1 0
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
.+..+.|++++..-++|||.|++=.-
T Consensus 75 ---~~t~~ai~la~~A~~~Gadavlv~~P 100 (293)
T 1w3i_A 75 ---LNLDDAIRLAKLSKDFDIVGIASYAP 100 (293)
T ss_dssp ---SCHHHHHHHHHHGGGSCCSEEEEECC
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 13778899999999999999998653
|
| >3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
Probab=86.40 E-value=7.3 Score=33.72 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=67.2
Q ss_pred HHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCceecC---C--cHH----HHHHHhCCchHHHHHHHHH
Q 022982 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---G--DWA----EHLIRNGPSAFKEYVEDCK 111 (289)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~---G--tlf----E~a~~qg~~~~~~yl~~~k 111 (289)
.+++.++.+.+. .|.+=+.... ..+.+++.-++++++|+.++. + +++ +....+.-+.+++.++.|+
T Consensus 39 ~~~~~l~~~~~~G~~~vEl~~~~----~~~~~~~~~~~l~~~gl~v~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~ 114 (287)
T 3kws_A 39 SLNEKLDFMEKLGVVGFEPGGGG----LAGRVNEIKQALNGRNIKVSAICAGFKGFILSTDPAIRKECMDTMKEIIAAAG 114 (287)
T ss_dssp SHHHHHHHHHHTTCCEEECBSTT----CGGGHHHHHHHHTTSSCEECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----hHHHHHHHHHHHHHcCCeEEEEecCCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 466667666655 6777777653 245689999999999997752 2 121 1111111126889999999
Q ss_pred HcCCCEEEecCCcccC------Ch-------hHHHHHHHHHHHcCCccccee
Q 022982 112 QVGFDTIELNVGSLEI------PE-------ETLLRYVRLVKSAGLKAKPKF 150 (289)
Q Consensus 112 ~lGF~~IEISdGti~i------~~-------~~r~~lI~~~~~~G~~v~~E~ 150 (289)
++|.+.|=+..|+... .. +...++.+.+++.|+++.-|-
T Consensus 115 ~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 166 (287)
T 3kws_A 115 ELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTSVIFEP 166 (287)
T ss_dssp HTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred HcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 9999999987664432 22 233445566777787755553
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=86.39 E-value=11 Score=35.54 Aligned_cols=140 Identities=9% Similarity=0.097 Sum_probs=91.3
Q ss_pred HHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022982 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (289)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (289)
+-+.|..+| ||.+=.||+.+ .| ...+-++.+++.+.....-+| .+. ..++ ++.+.+.|.+.|-|..
T Consensus 30 ia~~L~~~G--v~~IE~g~p~~--~~--~~~~~~~~i~~~~~~~~v~~~-----~r~--~~~d-i~~a~~~g~~~v~i~~ 95 (382)
T 2ztj_A 30 IAKALDEFG--IEYIEVTTPVA--SP--QSRKDAEVLASLGLKAKVVTH-----IQC--RLDA-AKVAVETGVQGIDLLF 95 (382)
T ss_dssp HHHHHHHHT--CSEEEECCTTS--CH--HHHHHHHHHHTSCCSSEEEEE-----EES--CHHH-HHHHHHTTCSEEEEEE
T ss_pred HHHHHHHcC--cCEEEEcCCcC--CH--HHHHHHHHHHhcCCCcEEEEE-----ccc--Chhh-HHHHHHcCCCEEEEEe
Confidence 445566666 88888888654 23 355677777777654221223 122 2333 6778888999999876
Q ss_pred Cccc-------CCh----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHH
Q 022982 123 GSLE-------IPE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (289)
Q Consensus 123 Gti~-------i~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~ 191 (289)
.+-+ .+. +.-.+.|+.+++.|-....++...+.. ..|++.+++.+
T Consensus 96 ~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~------------------------~~~~~~~~~~~ 151 (382)
T 2ztj_A 96 GTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTF------------------------RSEEQDLLAVY 151 (382)
T ss_dssp CC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTT------------------------TSCHHHHHHHH
T ss_pred ccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCC------------------------CCCHHHHHHHH
Confidence 5543 232 445688999999983322344442110 11588999999
Q ss_pred HHHHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 192 ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 192 ~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
+...++ |+.| .|+|..|-..+..+.++++
T Consensus 152 ~~~~~~-a~~i-----~l~DT~G~~~P~~~~~lv~ 180 (382)
T 2ztj_A 152 EAVAPY-VDRV-----GLADTVGVATPRQVYALVR 180 (382)
T ss_dssp HHHGGG-CSEE-----EEEETTSCCCHHHHHHHHH
T ss_pred HHHHHh-cCEE-----EecCCCCCCCHHHHHHHHH
Confidence 999999 9866 4788889888988888886
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=86.31 E-value=2.6 Score=38.25 Aligned_cols=108 Identities=11% Similarity=0.057 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 178 (289)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-=.|+ .|+ | .
T Consensus 21 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~gVi--aGv-------g--~--------------- 74 (288)
T 2nuw_A 21 ALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHKLI--FQV-------G--S--------------- 74 (288)
T ss_dssp HHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSCEE--EEC-------C--C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCeE--Eee-------C--C---------------
Confidence 67888999999999999886543 47999999999999987410011 222 1 1
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEecccccc-CCCCccHHHHHHHHhccCCCceEEecC
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIGRLGLEKTMFEAT 238 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d-~~G~~r~d~v~~ii~~l~~eklifEAP 238 (289)
.+..+.|++++..-++|||.|++=.--.+. .+-+---+-..+|++..++-=++.--|
T Consensus 75 ---~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 132 (288)
T 2nuw_A 75 ---LNLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYP 132 (288)
T ss_dssp ---SCHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 147788999999999999999986643222 111101112234555555555566655
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=86.26 E-value=2 Score=39.04 Aligned_cols=111 Identities=14% Similarity=0.223 Sum_probs=59.7
Q ss_pred ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCC
Q 022982 68 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGL 144 (289)
Q Consensus 68 p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~ 144 (289)
+.+.+++.++.+|++|+.+-. |+ . ..++ ++.+.++|.+.|=|++-. ...+.+.-.++.+.+. .+.
T Consensus 147 ~~~~l~~l~~~a~~lGl~~lv----ev---~---t~ee-~~~A~~~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~-~~~ 214 (272)
T 3qja_A 147 EQSVLVSMLDRTESLGMTALV----EV---H---TEQE-ADRALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLP-SSV 214 (272)
T ss_dssp CHHHHHHHHHHHHHTTCEEEE----EE---S---SHHH-HHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHGGGSC-TTS
T ss_pred CHHHHHHHHHHHHHCCCcEEE----Ec---C---CHHH-HHHHHHCCCCEEEECCCcccccccCHHHHHHHHHhCc-ccC
Confidence 344577777777777775422 11 1 2333 344556778887777522 2333333333322211 145
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHH
Q 022982 145 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKV 224 (289)
Q Consensus 145 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~i 224 (289)
.+..|.|++ + .+.+++.+++||+-|+| ++.|+.... -...+.++
T Consensus 215 pvVaegGI~-----------------------------t----~edv~~l~~~GadgvlV-Gsal~~a~d--p~~~~~~l 258 (272)
T 3qja_A 215 IRIAESGVR-----------------------------G----TADLLAYAGAGADAVLV-GEGLVTSGD--PRAAVADL 258 (272)
T ss_dssp EEEEESCCC-----------------------------S----HHHHHHHHHTTCSEEEE-CHHHHTCSC--HHHHHHHH
T ss_pred EEEEECCCC-----------------------------C----HHHHHHHHHcCCCEEEE-cHHHhCCCC--HHHHHHHH
Confidence 556666662 1 24556677999999998 444666553 13344555
Q ss_pred Hh
Q 022982 225 IG 226 (289)
Q Consensus 225 i~ 226 (289)
++
T Consensus 259 ~~ 260 (272)
T 3qja_A 259 VT 260 (272)
T ss_dssp HT
T ss_pred Hh
Confidence 54
|
| >2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=86.00 E-value=0.89 Score=40.43 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCC--cccC-----ChhHHHHHHHHHHHcCCcccceeeeec-------CCCCCC-----C-
Q 022982 102 AFKEYVEDCKQVGFDTIELNVG--SLEI-----PEETLLRYVRLVKSAGLKAKPKFAVMF-------NKSDIP-----S- 161 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG--ti~i-----~~~~r~~lI~~~~~~G~~v~~E~g~k~-------~~~evg-----~- 161 (289)
.+++.++.++++||+.||+... .++. +.+...++.+.+++.|+++.. ++.-. +..+.. +
T Consensus 16 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~g~~~~~p~~~~~~~~~~~~ 94 (340)
T 2zds_A 16 PLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWA-ISNHLVGQAVCDAIIDERHEAILPA 94 (340)
T ss_dssp CHHHHHHHHHHHTCSEEEEESSTTTCCHHHHHHCTTHHHHHHHHHHHTTCEEEE-EEEHHHHHHHHCSCCSHHHHHHSCH
T ss_pred CHHHHHHHHHHcCCCEEEeccccccCCccccccCHHHHHHHHHHHHHcCCeEEE-eeccccccccccccccccccccccc
Confidence 7899999999999999999863 3332 345567888999999999753 22100 100000 0
Q ss_pred ---c-cccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecccc-ccCC-----C--CccHH-------HH-
Q 022982 162 ---D-RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDV-CKHA-----D--SLRAD-------II- 221 (289)
Q Consensus 162 ---~-~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI-~d~~-----G--~~r~d-------~v- 221 (289)
. .|++ . ......+.+.+.++..-+.||..|++-.-.. .+.. . ..+.+ .+
T Consensus 95 ~l~~~~~~~-------~----~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 163 (340)
T 2zds_A 95 RIWGDGDAE-------G----VRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWN 163 (340)
T ss_dssp HHHTTCCHH-------H----HHHHHHHHHHHHHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHH
T ss_pred cccccCCHH-------H----HHHHHHHHHHHHHHHHHHcCCCEEEEecCCcCcccccccCCCcccchHHHHHHHHHHHH
Confidence 0 0000 0 0011245556666666688999999864211 1000 0 00111 12
Q ss_pred --HHHHhccCCCceEEec------CCchhHHHHHHHhC--CCcccccCCCCc
Q 022982 222 --AKVIGRLGLEKTMFEA------TNPRTSEWFIRRYG--PKVNLFVDHSQV 263 (289)
Q Consensus 222 --~~ii~~l~~eklifEA------P~k~qQ~~~I~~fG--~~VNLgI~~~eV 263 (289)
.++++..|+ +|.+|. .+..+-..+++..| |+|-+..|....
T Consensus 164 ~l~~~a~~~Gv-~l~lEn~~~~~~~~~~~~~~ll~~v~~~~~vg~~~D~~H~ 214 (340)
T 2zds_A 164 PILDVFDAEGV-RFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHF 214 (340)
T ss_dssp HHHHHHHHHTC-EEEEECCTTSSCCSHHHHHHHHHHTTTCTTEEEEECCHHH
T ss_pred HHHHHHHHcCC-EEEEEcCCCcccCCHHHHHHHHHhcCCCCCeeEEEchhhH
Confidence 223344455 678885 34556678999998 666665665544
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=85.84 E-value=4.1 Score=36.98 Aligned_cols=144 Identities=14% Similarity=0.075 Sum_probs=94.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.- =++.-=+|+ |
T Consensus 23 ~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGv-------g---------------- 79 (292)
T 3daq_A 23 EALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGT-------G---------------- 79 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-------C----------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeC-------C----------------
Confidence 478889999999999999665333 4789999999999998841 011111122 1
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~----~G~~r~d~v~~ii~~ 227 (289)
..+..+.|++++..-++|||.|++=.- -||+. .-++..+.+.++++
T Consensus 80 ----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~- 154 (292)
T 3daq_A 80 ----TNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQ- 154 (292)
T ss_dssp ----CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHT-
T ss_pred ----cccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhc-
Confidence 114788899999999999999998762 15653 24667778887775
Q ss_pred cCCCceE--EecC-CchhHHHHHHHhCC-CcccccCCCCchhhhhhhcccCC
Q 022982 228 LGLEKTM--FEAT-NPRTSEWFIRRYGP-KVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 228 l~~ekli--fEAP-~k~qQ~~~I~~fG~-~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
. .+|+ =|+. +-.+...+++..++ +..+.- -+|-+-+++|..|--|
T Consensus 155 ~--pnivgiK~ssgd~~~~~~~~~~~~~~~f~v~~-G~d~~~~~~l~~G~~G 203 (292)
T 3daq_A 155 H--PYIVALKDATNDFEYLEEVKKRIDTNSFALYS-GNDDNVVEYYQRGGQG 203 (292)
T ss_dssp S--TTEEEEEECCCCHHHHHHHHTTSCTTTSEEEE-SCGGGHHHHHHTTCCE
T ss_pred C--CCEEEEEeCCCCHHHHHHHHHHCCCCCEEEEE-CCHHHHHHHHhcCCCE
Confidence 3 3443 2443 45566667777766 555543 3344567888876544
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=85.67 E-value=4.1 Score=37.89 Aligned_cols=142 Identities=8% Similarity=0.091 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=+|+ |
T Consensus 56 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g-rvpViaGv-------g---------------- 111 (332)
T 2r8w_A 56 AFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRG-RRTLMAGI-------G---------------- 111 (332)
T ss_dssp HHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEEE-------C----------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcEEEec-------C----------------
Confidence 6788888888899999988654 3489999999999999874 1 11111233 1
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~---~G-~~r~d~v~~ii~~ 227 (289)
..+..+.|++++..-++|||-|++=.- -||+. .| ++..+.+.++++
T Consensus 112 ----~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~- 186 (332)
T 2r8w_A 112 ----ALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAY- 186 (332)
T ss_dssp ----CSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHHT-
T ss_pred ----CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHc-
Confidence 114778899999999999999998652 15663 23 677888888874
Q ss_pred cCCCceEE--ec-CC----chhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 228 LGLEKTMF--EA-TN----PRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 228 l~~eklif--EA-P~----k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
..+|+- |+ ++ -.+...+++..++++.+.-- +|-+.+++|..|--|
T Consensus 187 --~pnIvgiKdssgd~~~~~~~~~~l~~~~~~~f~v~~G-~D~~~l~~l~~G~~G 238 (332)
T 2r8w_A 187 --IPNIRAIKMPLPADADYAGELARLRPKLSDDFAIGYS-GDWGCTDATLAGGDT 238 (332)
T ss_dssp --STTEEEEEECCCTTCCHHHHHHHHTTTSCTTCEEEEC-CHHHHHHHHHTTCSE
T ss_pred --CCCEEEEEeCCCCchhHHHHHHHHHHhcCCCEEEEeC-chHHHHHHHHCCCCE
Confidence 345542 55 34 45566677777777666533 344668888877444
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=85.60 E-value=9.8 Score=36.86 Aligned_cols=75 Identities=9% Similarity=0.168 Sum_probs=48.1
Q ss_pred HHHHH---HhhcccccEEEecCcc------ccccChhHHHHHHHHHHhC---------------------Cce-----ec
Q 022982 43 LEDIF---ESMGQFVDGLKFSGGS------HSLMPKPFIEEVVKRAHQH---------------------DVY-----VS 87 (289)
Q Consensus 43 ~~DlL---e~ag~yID~lKfg~GT------s~l~p~~~l~eKI~l~~~~---------------------gV~-----v~ 87 (289)
.+|++ +...+|.|++=+=.+| ..+..++.|.+.++-.++. .++ +.
T Consensus 198 ~~Dy~~~a~~l~~~ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~ 277 (415)
T 3i65_A 198 VDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLA 277 (415)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHhhCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEec
Confidence 45554 4556778887766554 4567777788777766653 333 34
Q ss_pred CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc
Q 022982 88 TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125 (289)
Q Consensus 88 ~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti 125 (289)
|+ |- . +.+.+..+.|.+.|.|.|-++|.+.
T Consensus 278 pd-~~-----~--~~i~~iA~~a~~aGaDgIiv~Ntt~ 307 (415)
T 3i65_A 278 PD-LN-----Q--EQKKEIADVLLETNIDGMIISNTTT 307 (415)
T ss_dssp SC-CC-----H--HHHHHHHHHHHHHTCSEEEECCCBS
T ss_pred CC-CC-----H--HHHHHHHHHHHHcCCcEEEEeCCCc
Confidence 54 20 1 1578888999999999999999876
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=85.60 E-value=8.2 Score=35.54 Aligned_cols=85 Identities=27% Similarity=0.316 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCc--c------cC----------ChhHH----HHHHHHHHHcCCcccceeeeecCCCCCC
Q 022982 103 FKEYVEDCKQVGFDTIELNVGS--L------EI----------PEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIP 160 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt--i------~i----------~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg 160 (289)
+-+--+.+++.|||.|||.-+. + +. +.+.| +++|+.+++.= -.-+++|....+
T Consensus 146 ~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v---~~pv~vris~~~-- 220 (338)
T 1z41_A 146 FKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW---DGPLFVRVSASD-- 220 (338)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC---CSCEEEEEECCC--
T ss_pred HHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc---CCcEEEEecCcc--
Confidence 4444556678999999997653 1 11 22344 45666666641 123666643211
Q ss_pred CccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccc
Q 022982 161 SDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 208 (289)
Q Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarG 208 (289)
+...+. +.++.++.++..-++|+++|-+=++.
T Consensus 221 ---------------~~~~g~-~~~~~~~~a~~l~~~Gvd~i~v~~~~ 252 (338)
T 1z41_A 221 ---------------YTDKGL-DIADHIGFAKWMKEQGVDLIDCSSGA 252 (338)
T ss_dssp ---------------CSTTSC-CHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ---------------cCCCCC-CHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 111111 57788889998889999999986553
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=85.33 E-value=4.6 Score=41.76 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
.+++++.+.+.|.+.|-|.+..-++ +.....|+.+++.|..|. +.+... .++ .|+ ++ ..-
T Consensus 199 ~~~~i~~a~~~Gvd~irIf~s~n~l--~~l~~~i~~ak~~G~~v~--~~i~~~-~d~---~dp--------~r----~~~ 258 (718)
T 3bg3_A 199 VFKFCEVAKENGMDVFRVFDSLNYL--PNMLLGMEAAGSAGGVVE--AAISYT-GDV---ADP--------SR----TKY 258 (718)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSCCH--HHHHHHHHHHHTTTSEEE--EEEECC-SCT---TCT--------TC----CTT
T ss_pred hHHHHHHHHhcCcCEEEEEecHHHH--HHHHHHHHHHHHcCCeEE--EEEEee-ccc---cCC--------CC----CCC
Confidence 6899999999999999999866543 466678999999996543 334321 111 121 11 011
Q ss_pred cHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~ 227 (289)
|++.+++.+++..++||+.| .|+|..|-.....+.++++.
T Consensus 259 ~~e~~~~~a~~l~~~Ga~~I-----~l~DT~G~~~P~~v~~lV~~ 298 (718)
T 3bg3_A 259 SLQYYMGLAEELVRAGTHIL-----CIKDMAGLLKPTACTMLVSS 298 (718)
T ss_dssp CHHHHHHHHHHHHHHTCSEE-----EEECTTSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEE-----EEcCcCCCcCHHHHHHHHHH
Confidence 58999999999999999866 47899999998888887753
|
| >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} | Back alignment and structure |
|---|
Probab=85.33 E-value=20 Score=33.37 Aligned_cols=169 Identities=14% Similarity=0.176 Sum_probs=105.3
Q ss_pred CCCCceeEecCCCCCCCchhHHHHHHHhhccccc----EEEecCccccccCh----h-HHHHHHHHHHhC--CceecC--
Q 022982 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVD----GLKFSGGSHSLMPK----P-FIEEVVKRAHQH--DVYVST-- 88 (289)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID----~lKfg~GTs~l~p~----~-~l~eKI~l~~~~--gV~v~~-- 88 (289)
|..|++-++-+|. .+...+..++.+..|=| .+..+.|-+...-. + .+.+..+++.++ .|.--+
T Consensus 62 ~~aGV~~ii~~g~----~~~~~~~~~~La~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~l~~L~~l~~~~~~~vvAIGEi 137 (325)
T 3ipw_A 62 ERNGLSHIIITSG----CLNDFKKAIEIINKYQNLTNIKLVTTIGVHPTRTNELKQEGYLDELLLLCEKNIDKVVAIGEI 137 (325)
T ss_dssp HHTTEEEEEECCC----SHHHHHHHHHHHHHHGGGCSSEEEEEECCCGGGGGGGGSTTHHHHHHHHHHHTGGGEEEEEEE
T ss_pred HHcCCcEEEEccC----CHHHHHHHHHHHHHCCCcccceEEEEEEECcchhhcCCchHHHHHHHHHHhcCCCCEEEEEee
Confidence 4679999999999 66689999999988865 77778776654322 1 567777777664 221111
Q ss_pred C-cHH-----HHHHHhCCchHHHHHHHHHH-cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCC
Q 022982 89 G-DWA-----EHLIRNGPSAFKEYVEDCKQ-VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS 161 (289)
Q Consensus 89 G-tlf-----E~a~~qg~~~~~~yl~~~k~-lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~ 161 (289)
| .+. -...++. .|.+.++.|++ ++...|==+-.. .+ ++++.+++.+.... -|+-...+ |
T Consensus 138 GLD~~~~~~~~~~~Q~~--~F~~ql~lA~e~~~lPviiH~r~A----~~---d~l~iL~~~~~~~~--~gViH~Fs--G- 203 (325)
T 3ipw_A 138 GLDYERLQFSDKETQLS--GYRTLSILHQKYPYLPFFFHCRKS----WS---DLCQLNKELGYNGC--KGVVHCFD--G- 203 (325)
T ss_dssp EEETTCCSSSCHHHHHH--HHHHTHHHHHHCTTCCEEEEEESC----HH---HHHHHHHHTTCTTS--CEEECSCC--C-
T ss_pred ecCCCcCCCCCHHHHHH--HHHHHHHHHHHhhCCeEEEEeCch----HH---HHHHHHHhcCCCCC--cEEEEECC--C-
Confidence 2 121 1223444 79999999999 999877444332 23 45666666543311 23422111 1
Q ss_pred ccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch
Q 022982 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 241 (289)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~ 241 (289)
+ .+++++.|+.|. ++=+=+- ++. +.+.+ ++++.+|++||+.|..-|-
T Consensus 204 --s-----------------------~e~a~~~l~lG~-yis~~G~-~~k-----~~~~~-~~v~~iPldrlLlETDaP~ 250 (325)
T 3ipw_A 204 --T-----------------------EEEMNQILNEGW-DIGVTGN-SLQ-----SIELL-NVMKQIPIERLHIETDCPY 250 (325)
T ss_dssp --C-----------------------HHHHHHHHHTTC-EEEECSG-GGS-----SHHHH-HHHTTSCGGGEEECCCTTS
T ss_pred --C-----------------------HHHHHHHHhcCc-EEeeCcc-ccC-----cHHHH-HHHHhCCcccEEEeCCCcc
Confidence 1 578888999994 4433332 332 23334 5889999999999977653
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=85.27 E-value=7.7 Score=35.47 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+ |
T Consensus 36 ~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGv-------g---------------- 92 (304)
T 3l21_A 36 ATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGA-------G---------------- 92 (304)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC-------C----------------
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeC-------C----------------
Confidence 368889999999999999776443 479999999999999884 1011111122 1
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~----~G~~r~d~v~~ii~~ 227 (289)
..+..+.|++++..-++|||.|++=.- -||+. .-++..+.+.+++ +
T Consensus 93 ----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La-~ 167 (304)
T 3l21_A 93 ----TYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALA-S 167 (304)
T ss_dssp ----CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHH-T
T ss_pred ----CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh-c
Confidence 114788899999999999999999762 14543 2356677777776 3
Q ss_pred cCCCceE--Eec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 228 LGLEKTM--FEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 228 l~~ekli--fEA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
.| +|+ =|+ .+-.+...++. ++++.+. .-+|-+-+++|..|--|
T Consensus 168 ~p--nIvgiKdssgd~~~~~~~~~--~~~f~v~-~G~d~~~l~~l~~Ga~G 213 (304)
T 3l21_A 168 HP--NIVGVXDAKADLHSGAQIMA--DTGLAYY-SGDDALNLPWLRMGATG 213 (304)
T ss_dssp ST--TEEEEEECSCCHHHHHHHHH--HHCCEEE-ESSGGGHHHHHHHTCCE
T ss_pred CC--CEEEEECCCCCHHHHHHHhc--CCCeEEE-eCchHHHHHHHHcCCCE
Confidence 33 332 233 34444444552 3444443 33444557777766433
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=85.04 E-value=4.4 Score=37.11 Aligned_cols=143 Identities=10% Similarity=0.092 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=.|+ |
T Consensus 36 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv-------g----------------- 91 (307)
T 3s5o_A 36 KLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGS-------G----------------- 91 (307)
T ss_dssp HHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEEC-------C-----------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEec-------C-----------------
Confidence 67888889999999999776544 369999999999999884 0011001122 1
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc----------c-----------------cccC---CC-CccHHHHHHHHh
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD----------D-----------------VCKH---AD-SLRADIIAKVIG 226 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar----------G-----------------I~d~---~G-~~r~d~v~~ii~ 226 (289)
..+..+.|++++..-++|||.|++=.- | ||+. .| ++..+.+.++++
T Consensus 92 ---~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 168 (307)
T 3s5o_A 92 ---CESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQ 168 (307)
T ss_dssp ---CSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeCCcccCCCCCHHHHHHHhc
Confidence 114778899999999999999998431 1 4553 22 566777777763
Q ss_pred ccCCCceE--Eec-CCchhHHHHHHHh-CCCcccccCCCCchhhhhhhcccCC
Q 022982 227 RLGLEKTM--FEA-TNPRTSEWFIRRY-GPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 227 ~l~~ekli--fEA-P~k~qQ~~~I~~f-G~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
.+ +|+ =|+ .+-.+...++++. +++..+.--. |-+-+++|..|--|
T Consensus 169 -~p--nIvgiKdssgd~~~~~~~~~~~~~~~f~v~~G~-d~~~l~~l~~G~~G 217 (307)
T 3s5o_A 169 -HP--NIVGMXDSGGDVTRIGLIVHKTRKQDFQVLAGS-AGFLMASYALGAVG 217 (307)
T ss_dssp -ST--TEEEEEECSCCHHHHHHHHHHTTTSSCEEEESS-GGGHHHHHHHTCCE
T ss_pred -CC--CEEEEEcCCCCHHHHHHHHHhccCCCeEEEeCc-HHHHHHHHHcCCCE
Confidence 33 332 244 3555556666666 5666664333 33567777766443
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=84.99 E-value=4.4 Score=37.22 Aligned_cols=148 Identities=9% Similarity=0.052 Sum_probs=87.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
+.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.- . .+-+-- -+|
T Consensus 29 ~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-g---rvpVia---Gvg----------------- 84 (313)
T 3dz1_A 29 VSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-K---SMQVIV---GVS----------------- 84 (313)
T ss_dssp HHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-T---TSEEEE---ECC-----------------
T ss_pred HHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-C---CCcEEE---ecC-----------------
Confidence 367888888889999999654333 3699999999999998853 1 111100 111
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc--------------------c------cccC----CCCccHHHHHHHHhc
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD--------------------D------VCKH----ADSLRADIIAKVIGR 227 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--------------------G------I~d~----~G~~r~d~v~~ii~~ 227 (289)
..+..+.|++++..-++|||.|++=.= + ||+. .-++..+.+.++++.
T Consensus 85 ---~~~t~~ai~la~~A~~~Gadavlv~~P~~~~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La~~ 161 (313)
T 3dz1_A 85 ---APGFAAMRRLARLSMDAGAAGVMIAPPPSLRTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVMD 161 (313)
T ss_dssp ---CSSHHHHHHHHHHHHHHTCSEEEECCCTTCCSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHHHh
Confidence 114778899999999999999998431 2 3442 225566677776654
Q ss_pred cC-CCceEEec-CCchhHHHHHHHhC----CCcccccCCCCchhhhhhhcccCC
Q 022982 228 LG-LEKTMFEA-TNPRTSEWFIRRYG----PKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 228 l~-~eklifEA-P~k~qQ~~~I~~fG----~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
.| +-=|=.++ ++-.+...+++..+ ++..+.--.++..-..+|..|--|
T Consensus 162 ~pnIvgiKd~~~~~~~~~~~~~~~~~~~~~~~f~v~~G~d~~~l~~~l~~G~~G 215 (313)
T 3dz1_A 162 SASCVMLKHEDWPGLEKITTLRGFQKDGSLRPLSILCGNGGLFLDFEMERGADG 215 (313)
T ss_dssp CSSEEEEEECCSSCHHHHHHHHHHHHHTSSCCCEEEECGGGTTHHHHHHHTCCE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhcCccCCCCeEEEeCCcHHHHHHHHHCCCcE
Confidence 43 11111243 34455556666665 555554333332222246655444
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=84.98 E-value=3.4 Score=40.10 Aligned_cols=140 Identities=14% Similarity=0.226 Sum_probs=87.1
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCc--eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (289)
.+-+.|..+| ||.+=.||..+. | . -.+-++...+.+. .++. | .+. ..++ ++.+.+.|.+.|-
T Consensus 65 ~Ia~~L~~~G--v~~IEvG~P~as--p-~-d~~~~~~i~~~~~~~~v~~--~-----~r~--~~~d-i~~A~~aG~~~V~ 128 (423)
T 3ivs_A 65 QIAKALDNFG--VDYIELTSPVAS--E-Q-SRQDCEAICKLGLKCKILT--H-----IRC--HMDD-ARVAVETGVDGVD 128 (423)
T ss_dssp HHHHHHHHHT--CSEEEECCTTSC--H-H-HHHHHHHHHTSCCSSEEEE--E-----EES--CHHH-HHHHHHTTCSEEE
T ss_pred HHHHHHHHcC--CCEEEEeecccC--H-H-HHHHHHHHHhcCCCCEEEE--e-----ecc--Chhh-HHHHHHcCCCEEE
Confidence 3455666777 788888885443 2 2 2233333444443 2221 1 121 2333 5777888999998
Q ss_pred ecCCcc--------cCC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHH
Q 022982 120 LNVGSL--------EIP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (289)
Q Consensus 120 ISdGti--------~i~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (289)
|...+- ..+ .+.-.+.|+.+++.|+.| +|...+. + ..|++.+
T Consensus 129 i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V--~~~~eda-----------~-------------r~d~~~~ 182 (423)
T 3ivs_A 129 VVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEV--RFSSEDS-----------F-------------RSDLVDL 182 (423)
T ss_dssp EEEEC-------------CHHHHHHHHHHHHHHTTTCEE--EEEEESG-----------G-------------GSCHHHH
T ss_pred EEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEE--EEEEccC-----------c-------------CCCHHHH
Confidence 864432 222 344456899999999876 4444221 0 1258889
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
++.+++..++||+.| .|+|..|-..+..+.++++.+
T Consensus 183 ~~v~~~~~~~Ga~~i-----~l~DTvG~~~P~~v~~lv~~l 218 (423)
T 3ivs_A 183 LSLYKAVDKIGVNRV-----GIADTVGCATPRQVYDLIRTL 218 (423)
T ss_dssp HHHHHHHHHHCCSEE-----EEEETTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcc-----ccCCccCcCCHHHHHHHHHHH
Confidence 999999999999875 478888888888888877543
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=84.96 E-value=5.8 Score=36.25 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=101.2
Q ss_pred CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecC
Q 022982 82 HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFN 155 (289)
Q Consensus 82 ~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~ 155 (289)
.||.+..=|.|-.=-.=+.+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ +|+
T Consensus 18 ~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGv--- 92 (304)
T 3cpr_A 18 GTVGVAMVTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLI--AGV--- 92 (304)
T ss_dssp CSEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEE--EEC---
T ss_pred CceEEeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--ecC---
Confidence 466555444331000111236888899999999999877543 3489999999999999873 2 1111 233
Q ss_pred CCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccc
Q 022982 156 KSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVC 210 (289)
Q Consensus 156 ~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~ 210 (289)
| ..+..+.|++++..-++|||.|++=.- -||
T Consensus 93 ----g--------------------~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilY 148 (304)
T 3cpr_A 93 ----G--------------------TNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLY 148 (304)
T ss_dssp ----C--------------------CSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred ----C--------------------CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1 114778899999999999999998652 156
Q ss_pred cC----CCCccHHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 211 KH----ADSLRADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 211 d~----~G~~r~d~v~~ii~~l~~eklif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
+. .-++..+.+.++++ ..+|+- |+ ++-.+...+++.. +..+ ..-+|-+.+++|..|--|
T Consensus 149 n~P~~tg~~l~~~~~~~La~---~pnIvgiKdssgd~~~~~~~~~~~--~f~v-~~G~d~~~l~~l~~G~~G 214 (304)
T 3cpr_A 149 DIPGRSGIPIESDTMRRLSE---LPTILAVXDAKGDLVAATSLIKET--GLAW-YSGDDPLNLVWLALGGSG 214 (304)
T ss_dssp ECHHHHSSCCCHHHHHHHTT---STTEEEEEECSCCHHHHHHHHHHH--CCEE-EECSGGGHHHHHHTTCCE
T ss_pred eCccccCcCCCHHHHHHHHc---CCCEEEEecCCCCHHHHHHHHHhc--CEEE-EECcHHHHHHHHHCCCCE
Confidence 63 23567788887763 345543 44 4556666677665 3333 444555678888876444
|
| >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} | Back alignment and structure |
|---|
Probab=84.92 E-value=12 Score=35.56 Aligned_cols=139 Identities=17% Similarity=0.221 Sum_probs=86.6
Q ss_pred chhHHHHHHHhhcc--cccEEEecCccccccChhHHHHHHHHHHhC-Cc-eecCCcHHHHHHHhCCchHHHHHHHHHHcC
Q 022982 39 SHNVLEDIFESMGQ--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (289)
Q Consensus 39 g~~~~~DlLe~ag~--yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lG 114 (289)
....+..+++.+.+ -+.-+-|.+|--.+.+.+.|.+.++.+++. ++ .+.-+|-.=+.+-+- --+++++.+++.
T Consensus 146 s~eei~~~i~~i~~~~gi~~V~ltGGEPll~~d~~L~~il~~l~~~~~v~~i~i~Tng~~~~p~~--it~e~l~~L~~~- 222 (416)
T 2a5h_A 146 PMERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQR--ITPELVNMLKKY- 222 (416)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCHHHHHHHHHHHHTSTTCCEEEEECSHHHHCGGG--CCHHHHHHHGGG-
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCHHHHHHHHHHHHhcCCccEEEEEeccccccccc--CCHHHHHHHHhc-
Confidence 45677777776554 367789999999999977799999999987 44 233233110011010 125677777777
Q ss_pred CCEEEecC---CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHH
Q 022982 115 FDTIELNV---GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (289)
Q Consensus 115 F~~IEISd---Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~ 191 (289)
+.|-||- +.-.|. ++..+.|+++++.|+.+....-+-.+ ++ | +.+.+.+.+
T Consensus 223 -~~v~Isl~~~~~~ei~-~~v~~ai~~L~~aGi~v~i~~vll~G---vN---d------------------~~e~l~~l~ 276 (416)
T 2a5h_A 223 -HPVWLNTHFNHPNEIT-EESTRACQLLADAGVPLGNQSVLLRG---VN---D------------------CVHVMKELV 276 (416)
T ss_dssp -CSEEEEECCCSGGGCC-HHHHHHHHHHHHTTCCEEEEEECCTT---TT---C------------------SHHHHHHHH
T ss_pred -CcEEEEEecCCHHHHh-HHHHHHHHHHHHcCCEEEEEEEEECC---CC---C------------------CHHHHHHHH
Confidence 5555542 333555 67789999999999875544433111 11 1 245566666
Q ss_pred HHHHHccCcEEEEec
Q 022982 192 ERCLEAGADMIMIDS 206 (289)
Q Consensus 192 ~~dLeAGA~~ViiEa 206 (289)
+...+.|+....+.-
T Consensus 277 ~~l~~lgv~~~~i~~ 291 (416)
T 2a5h_A 277 NKLVKIRVRPYYIYQ 291 (416)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCceEEEee
Confidence 666788988765553
|
| >1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* | Back alignment and structure |
|---|
Probab=84.78 E-value=3.2 Score=38.40 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=46.6
Q ss_pred HHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec------CCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022982 79 AHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN------VGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 79 ~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS------dGti~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
+.+||+..+.. .| .-++.++.+|++|+++|-|. .|.-+ .+.-++++++|+++||+|.-.|+.
T Consensus 15 ~e~~g~~~~~~--------~G--~~~d~~~ilk~~G~N~VRi~~w~~P~~g~~~--~~~~~~~~~~A~~~GlkV~ld~Hy 82 (332)
T 1hjs_A 15 EERAGVSYKNT--------NG--NAQPLENILAANGVNTVRQRVWVNPADGNYN--LDYNIAIAKRAKAAGLGVYIDFHY 82 (332)
T ss_dssp HHHTTCCCBCT--------TS--CBCCHHHHHHHTTCCEEEEEECSSCTTCTTS--HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHcCCEEECC--------CC--CcccHHHHHHHCCCCEEEEeeeeCCCCCcCC--HHHHHHHHHHHHHCCCEEEEEecc
Confidence 56677766651 12 23456788899999999994 44333 466778999999999999999877
Q ss_pred ec
Q 022982 153 MF 154 (289)
Q Consensus 153 k~ 154 (289)
.+
T Consensus 83 sd 84 (332)
T 1hjs_A 83 SD 84 (332)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=84.77 E-value=4.1 Score=38.21 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 178 (289)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+......|+ +|+ .+
T Consensus 48 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~grvpVi--aGv---g~--------------------- 101 (344)
T 2hmc_A 48 ALVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKAGIPVI--VGT---GA--------------------- 101 (344)
T ss_dssp HHHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHTTCCEE--EEC---CC---------------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHHHhCCCCcEE--Eec---CC---------------------
Confidence 5677777777888888776544 346889999999888322222222 333 10
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
.+..+.|++++..-++|||.|++=.-
T Consensus 102 ---~st~eai~la~~A~~~Gadavlv~~P 127 (344)
T 2hmc_A 102 ---VNTASAVAHAVHAQKVGAKGLMVIPR 127 (344)
T ss_dssp ---SSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 13677788888888889998888654
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=84.74 E-value=11 Score=34.29 Aligned_cols=145 Identities=14% Similarity=0.068 Sum_probs=100.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.- =++.-=+|+ |
T Consensus 28 ~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv-------g---------------- 84 (297)
T 3flu_A 28 EQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGT-------G---------------- 84 (297)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-------C----------------
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeC-------C----------------
Confidence 367888889899999999875444 3789999999999998830 011111122 1
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~----~G~~r~d~v~~ii~~ 227 (289)
..+..+.|++++..-++|||.|++=.- -+|+. .-++..+.+.++. +
T Consensus 85 ----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La-~ 159 (297)
T 3flu_A 85 ----ANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLA-E 159 (297)
T ss_dssp ----CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHT-T
T ss_pred ----CcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHH-c
Confidence 114788899999999999999998762 15663 3467778888886 3
Q ss_pred cCCCceE--Eec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCCC
Q 022982 228 LGLEKTM--FEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 228 l~~ekli--fEA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G~ 276 (289)
.| +|+ =|+ .+-.+...++++.+++..+.-- +|-+.+++|..|--|-
T Consensus 160 ~p--nivgiKdssgd~~~~~~~~~~~~~~f~v~~G-~d~~~l~~l~~G~~G~ 208 (297)
T 3flu_A 160 IP--NIVGVKEASGNIGSNIELINRAPEGFVVLSG-DDHTALPFMLCGGHGV 208 (297)
T ss_dssp ST--TEEEEEECSCCHHHHHHHHHHSCTTCEEEEC-CGGGHHHHHHTTCCEE
T ss_pred CC--CEEEEEeCCCCHHHHHHHHHhcCCCeEEEEC-cHHHHHHHHhCCCCEE
Confidence 43 442 244 5667777888888888777533 3455788898775443
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=84.49 E-value=3.4 Score=35.02 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.++++.+.+.|.+.|.+......=|.+...++++.+++. |+.+. +.-
T Consensus 78 ~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~----~~~--------------------------- 126 (223)
T 1y0e_A 78 SKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIM----ADI--------------------------- 126 (223)
T ss_dssp HHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEE----EEC---------------------------
T ss_pred HHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEE----ecC---------------------------
Confidence 456778889999999987654332224456788888887 65542 210
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCC-----CccHHHHHHHHhcc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHAD-----SLRADIIAKVIGRL 228 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G-----~~r~d~v~~ii~~l 228 (289)
.+++ .+++..++||++|++-..|.++... ...-+.+.++.+.+
T Consensus 127 ~t~~----e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~ 174 (223)
T 1y0e_A 127 ATVE----EAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV 174 (223)
T ss_dssp SSHH----HHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC
T ss_pred CCHH----HHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC
Confidence 0133 3455779999999986665543321 12334566666554
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=84.42 E-value=5.2 Score=34.33 Aligned_cols=92 Identities=7% Similarity=-0.025 Sum_probs=56.3
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC--CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCC
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF 115 (289)
.+....++++..+.++|++|+|+=-..-...+.+++ .+++ +.++.. .-+.+ .-..|.+.|.+.|.
T Consensus 17 ~~~~~~~~~~~~~~~vd~ie~g~~~~~~~G~~~i~~----lr~~~~~~~i~ld~~l~d--------~p~~~~~~~~~aGa 84 (218)
T 3jr2_A 17 NLTDAVAVASNVASYVDVIEVGTILAFAEGMKAVST----LRHNHPNHILVCDMKTTD--------GGAILSRMAFEAGA 84 (218)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECHHHHHHHTTHHHHH----HHHHCTTSEEEEEEEECS--------CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhcCCceEEEeCcHHHHhcCHHHHHH----HHHhCCCCcEEEEEeecc--------cHHHHHHHHHhcCC
Confidence 566777888878889999999952111122233333 3333 444432 11211 12347788999999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
|.|=+-+-.. .+...++++.+++.|.+
T Consensus 85 d~i~vh~~~~---~~~~~~~~~~~~~~g~~ 111 (218)
T 3jr2_A 85 DWITVSAAAH---IATIAACKKVADELNGE 111 (218)
T ss_dssp SEEEEETTSC---HHHHHHHHHHHHHHTCE
T ss_pred CEEEEecCCC---HHHHHHHHHHHHHhCCc
Confidence 9998876542 34456788888887664
|
| >1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5 | Back alignment and structure |
|---|
Probab=84.31 E-value=2.3 Score=36.19 Aligned_cols=141 Identities=14% Similarity=0.122 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecC-CC--CCCCccccccccccccCCCCc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KS--DIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~--evg~~~d~~~~~~~~~~~~~~ 178 (289)
.+++.++.++++||+.||+..- .. .+..++-+.+++.|+++.+ ++.-.. .. +-+...|+ ..+
T Consensus 16 ~~~~~l~~~~~~G~~~vEl~~~-~~---~~~~~~~~~l~~~gl~~~~-~~~~~~~~~~g~~~~~~~~--------~~~-- 80 (260)
T 1k77_A 16 PFIERFAAARKAGFDAVEFLFP-YN---YSTLQIQKQLEQNHLTLAL-FNTAPGDINAGEWGLSALP--------GRE-- 80 (260)
T ss_dssp CGGGHHHHHHHHTCSEEECSCC-TT---SCHHHHHHHHHHTTCEEEE-EECCCCCGGGTCSCSTTCT--------TCH--
T ss_pred CHHHHHHHHHHhCCCEEEecCC-CC---CCHHHHHHHHHHcCCceEE-EecCCcccccccCCCCCCh--------hHH--
Confidence 6888899999999999999852 12 2345677888999999765 322100 00 00000011 100
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccH-------HHHH---HHHhccCCCceEEecC----------
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA-------DIIA---KVIGRLGLEKTMFEAT---------- 238 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~-------d~v~---~ii~~l~~eklifEAP---------- 238 (289)
....+.+.+.++..-+.||..|.+-+ |.+.. +.-+. +.+. +.++..|+ ++.+|.=
T Consensus 81 --~~~~~~~~~~i~~a~~lG~~~v~~~~-g~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~~E~~~~~~~~~~~~ 155 (260)
T 1k77_A 81 --HEAHADIDLALEYALALNCEQVHVMA-GVVPA-GEDAERYRAVFIDNIRYAADRFAPHGK-RILVEALSPGVKPHYLF 155 (260)
T ss_dssp --HHHHHHHHHHHHHHHHTTCSEEECCC-CBCCT-TSCHHHHHHHHHHHHHHHHHHHGGGTC-EEEECCCCTTTSTTBSC
T ss_pred --HHHHHHHHHHHHHHHHcCCCEEEECc-CCCCC-CCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEEeCCccCCCcCcc
Confidence 11245555666666678999998854 22211 11111 1222 23334454 5777753
Q ss_pred -CchhHHHHHHHhCC-CcccccCCCC
Q 022982 239 -NPRTSEWFIRRYGP-KVNLFVDHSQ 262 (289)
Q Consensus 239 -~k~qQ~~~I~~fG~-~VNLgI~~~e 262 (289)
...+-..++++.|+ +|-+..|..+
T Consensus 156 ~~~~~~~~l~~~~~~~~~g~~~D~~h 181 (260)
T 1k77_A 156 SSQYQALAIVEEVARDNVFIQLDTFH 181 (260)
T ss_dssp CSHHHHHHHHHHHCCTTEEEEEEHHH
T ss_pred CCHHHHHHHHHHhCCCCEEEEeeHHH
Confidence 33467788999985 4544344433
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=84.01 E-value=15 Score=33.91 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=95.0
Q ss_pred hhHHHHHHHhhccc--ccEEEecCccccc-cChhHHHHHH-HHHH--hCCceecC----CcHHHHHHHhCCchHHHHHHH
Q 022982 40 HNVLEDIFESMGQF--VDGLKFSGGSHSL-MPKPFIEEVV-KRAH--QHDVYVST----GDWAEHLIRNGPSAFKEYVED 109 (289)
Q Consensus 40 ~~~~~DlLe~ag~y--ID~lKfg~GTs~l-~p~~~l~eKI-~l~~--~~gV~v~~----GtlfE~a~~qg~~~~~~yl~~ 109 (289)
...++.+++.|-+- ==++-++-|+... .+.+.+...+ .+++ .++|+|.. |..+|. +..
T Consensus 31 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPValHlDHg~~~e~------------i~~ 98 (288)
T 3q94_A 31 LEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEK------------CKE 98 (288)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEEEEEEECSHHH------------HHH
T ss_pred HHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEEECCCCCCHHH------------HHH
Confidence 44445555444321 0134444444443 2444444443 3555 56676664 344553 445
Q ss_pred HHHcCCCEEEecCCcccCChh--HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHH
Q 022982 110 CKQVGFDTIELNVGSLEIPEE--TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (289)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~--~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (289)
|-+.||+.|=+.--..++.+- .=.++++.+...|.-|--|+|.= |-++|..- . ......||++.
T Consensus 99 ai~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaElG~v------gG~Ed~~~----~----~~~~yT~Peea 164 (288)
T 3q94_A 99 AIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTV------GGQEDDVI----A----EGVIYADPAEC 164 (288)
T ss_dssp HHHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEESBC------BCSCSSCG----G----GGCBCCCHHHH
T ss_pred HHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeee------ccccCCcC----C----ccccCCCHHHH
Confidence 677899999996555443321 12367788889999999999982 11222100 0 00011268777
Q ss_pred HHHHHHHHHccCcEEEEe---ccccccCCCCccHHHHHHHHhccCC
Q 022982 188 IRRAERCLEAGADMIMID---SDDVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiE---arGI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
.+.++ +-|.|.+=+= +-|.|..+-.++.|.+++|-+.++.
T Consensus 165 ~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~v~v 207 (288)
T 3q94_A 165 KHLVE---ATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGV 207 (288)
T ss_dssp HHHHH---HHCCSEEEECSSCBSSCCSSSCCCCHHHHHHHHHHHCS
T ss_pred HHHHH---HHCCCEEEEEcCcccCCcCCCCccCHHHHHHHHHhcCC
Confidence 77666 5788876553 2389988888999999999887753
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=83.49 E-value=5.4 Score=36.80 Aligned_cols=79 Identities=10% Similarity=0.102 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.+.++++++-+-|.+.|=+.-.|- .|+.++|.++++.+.+.- =++.-=+|+ |
T Consensus 32 ~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv-------g---------------- 88 (318)
T 3qfe_A 32 ASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGV-------G---------------- 88 (318)
T ss_dssp HHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEEC-------C----------------
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC-------C----------------
Confidence 3688889999999999997765443 699999999999998841 011111122 1
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
..+..+.|++++..-++|||.|++=.
T Consensus 89 ----~~~t~~ai~la~~a~~~Gadavlv~~ 114 (318)
T 3qfe_A 89 ----AHSTRQVLEHINDASVAGANYVLVLP 114 (318)
T ss_dssp ----CSSHHHHHHHHHHHHHHTCSEEEECC
T ss_pred ----CCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 11477889999999999999999854
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=83.47 E-value=6.7 Score=36.11 Aligned_cols=98 Identities=19% Similarity=0.188 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 170 (289)
-+-.+..-+.|..+|-|-|+.. -+|.++.++-|+.+++.+-. +.|-++- ..|..
T Consensus 93 ~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~--~~~~i~a-------Rtda~---- 159 (290)
T 2hjp_A 93 HYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARAD--RDFVVIA-------RVEAL---- 159 (290)
T ss_dssp HHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSS--TTSEEEE-------EECTT----
T ss_pred HHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhccc--CCcEEEE-------eehHh----
Confidence 3334444458999999999863 36777777788877776432 3344421 11210
Q ss_pred cccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 171 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 171 ~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
+. ....++.|++++...+||||.|.+|++ -...+++.+|.+.++
T Consensus 160 -----~a---~~g~~~ai~Ra~ay~eAGAd~i~~e~~-------~~~~~~~~~i~~~~~ 203 (290)
T 2hjp_A 160 -----IA---GLGQQEAVRRGQAYEEAGADAILIHSR-------QKTPDEILAFVKSWP 203 (290)
T ss_dssp -----TT---TCCHHHHHHHHHHHHHTTCSEEEECCC-------CSSSHHHHHHHHHCC
T ss_pred -----hc---cccHHHHHHHHHHHHHcCCcEEEeCCC-------CCCHHHHHHHHHHcC
Confidence 00 113789999999999999999999983 122467888888777
|
| >3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=83.40 E-value=11 Score=34.12 Aligned_cols=170 Identities=17% Similarity=0.162 Sum_probs=101.4
Q ss_pred CCCCceeEecCCCCCCCchhHHHHHHHhhccccc---EEEecCccccccC----hhHHHHHHHHHHhCCceecC--C-cH
Q 022982 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVD---GLKFSGGSHSLMP----KPFIEEVVKRAHQHDVYVST--G-DW 91 (289)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID---~lKfg~GTs~l~p----~~~l~eKI~l~~~~gV~v~~--G-tl 91 (289)
+..|++-++-+|. .+...+..++.+..|=+ .+..+.|-+.-.. ++.+.+..+++++..|.--+ | .+
T Consensus 27 ~~~gV~~~v~~g~----~~~~~~~~~~la~~~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~l~~~~~vvaIGEiGLD~ 102 (287)
T 3rcm_A 27 LEAGVTQMLLTGT----SLAVSEQALELCQQLDASGAHLFATAGVHPHDAKAWDTDSERQLRLLLSEPRVRAVGECGLDF 102 (287)
T ss_dssp HHTTEEEEEECCC----SHHHHHHHHHHHHHHCTTSSSEEEEECCCGGGGGGCCTTHHHHHHHHHTSTTEEEEEEEEEET
T ss_pred HHcCCeEEEEecC----CHHHHHHHHHHHHhCCCCCceEEEEEEECcCccccCCHHHHHHHHHHhcCCCeEEEEEeeeCC
Confidence 4679999999998 66688888888888865 4777777665432 34466655666554432211 2 12
Q ss_pred H----HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 022982 92 A----EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (289)
Q Consensus 92 f----E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~ 167 (289)
. ....++. .|.+-++.|+++|...+==+-. ..+ ++++.+++.+.. +.-++-...+ | +
T Consensus 103 ~~~~~~~~~Q~~--~F~~ql~lA~e~~lPv~iH~r~----a~~---~~l~il~~~~~~--~~~~V~H~fs--G---~--- 163 (287)
T 3rcm_A 103 NRDFSPRPLQEK--ALEAQLTLAAQLRLPVFLHERD----ASE---RLLAILKDYRDH--LTGAVVHCFT--G---E--- 163 (287)
T ss_dssp TTCSSCHHHHHH--HHHHHHHHHHHHTCCEEEEEES----CHH---HHHHHHHTTGGG--CSCEEECSCC--C---C---
T ss_pred CcccCcHHHHHH--HHHHHHHHHHHhCCCEEEEcCC----cHH---HHHHHHHHcCCC--CCeEEEEeCC--C---C---
Confidence 1 1123343 7999999999999887632332 223 455555554322 1113321111 1 0
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccc-cccCCCCccHHHHHHHHhccCCCceEEecCCc
Q 022982 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD-VCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (289)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarG-I~d~~G~~r~d~v~~ii~~l~~eklifEAP~k 240 (289)
.+++++.++.|.+.=+- | ++.. -|...+.++++.+|++||++|...|
T Consensus 164 --------------------~e~a~~~l~~G~yis~~---g~i~~~---k~~~~l~~~v~~ip~drlLlETD~P 211 (287)
T 3rcm_A 164 --------------------REALFAYLDLDLHIGIT---GWICDE---RRGTHLHPLVGNIPEGRLMLESDAP 211 (287)
T ss_dssp --------------------HHHHHHHHHTTCEEEEC---GGGGCT---TTCGGGHHHHTTSCTTSEEECCCTT
T ss_pred --------------------HHHHHHHHHCCcEEEEC---chhccc---cCHHHHHHHHHhcCCccEEEeccCC
Confidence 46777888899654332 4 2221 1223467888999999999998755
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=83.26 E-value=2.1 Score=39.65 Aligned_cols=147 Identities=14% Similarity=0.222 Sum_probs=79.6
Q ss_pred hcccccEEEecCccccccChhHHHHHHHHHHhCCc--eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe-cCCccc
Q 022982 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL-NVGSLE 126 (289)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI-SdGti~ 126 (289)
..+|+|++|+|-+... +.+.|++ +. +.|. .+..|... .++.+..-++++++-|-+-|=+ --|+ +
T Consensus 107 l~~~vd~lqIgA~~~~--n~~LLr~-va---~~gkPVilK~G~~~------t~~ei~~ave~i~~~Gn~~i~L~erg~-~ 173 (285)
T 3sz8_A 107 VAEIADVLQVPAFLAR--QTDLVVA-IA---KAGKPVNVKKPQFM------SPTQLKHVVSKCGEVGNDRVMLCERGS-S 173 (285)
T ss_dssp HHTTCSEEEECGGGTT--CHHHHHH-HH---HTSSCEEEECCTTS------CGGGTHHHHHHHHHTTCCCEEEEECCE-E
T ss_pred HHHhCCEEEECccccC--CHHHHHH-HH---ccCCcEEEeCCCCC------CHHHHHHHHHHHHHcCCCcEEEEeCCC-C
Confidence 4578999999865443 3335554 33 3455 44567530 1113344455556666653333 2233 2
Q ss_pred CChhH---HHHHHHHHHHc--CCcccceeeeecCCCCC---CCccccccccccccCCCCccccccHHHHHHHHHHHHHcc
Q 022982 127 IPEET---LLRYVRLVKSA--GLKAKPKFAVMFNKSDI---PSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (289)
Q Consensus 127 i~~~~---r~~lI~~~~~~--G~~v~~E~g~k~~~~ev---g~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG 198 (289)
-+..+ -++.|..+++. |+. ++. ++...+ |..+.. +-| ..+.++..+...+.+|
T Consensus 174 y~~~~~~vdl~~i~~lk~~~~~~p----V~~-D~sHs~q~p~~~~~~------------s~G--~r~~v~~~a~AAvA~G 234 (285)
T 3sz8_A 174 FGYDNLVVDMLGFRQMAETTGGCP----VIF-DVTHSLQCRDPLGDA------------SGG--RRRQVLDLARAGIAVG 234 (285)
T ss_dssp CSSSCEECCTTHHHHHHHHTTSCC----EEE-ETTTTCC-----------------------------HHHHHHHHHHHC
T ss_pred CCCCcCccCHHHHHHHHHhCCCCC----EEE-eCCCccccCCCcCCC------------CCC--chhhHHHHHHHHHHhC
Confidence 22222 24567777775 444 333 111111 000000 000 1344577889999999
Q ss_pred CcEEEEecc-----ccccCCCCccHHHHHHHHhcc
Q 022982 199 ADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 199 A~~ViiEar-----GI~d~~G~~r~d~v~~ii~~l 228 (289)
|+-+|||-- -+.|..-.+..+.++++++.+
T Consensus 235 A~gl~IE~H~~pd~al~D~~~sl~p~el~~lv~~i 269 (285)
T 3sz8_A 235 IAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQM 269 (285)
T ss_dssp CSEEEEEEESCGGGCSCSSCCCEEGGGHHHHHHHH
T ss_pred CCEEEEEeccChhccCCchhhccCHHHHHHHHHHH
Confidence 999999983 678888889988888888654
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=83.23 E-value=7.1 Score=35.21 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=63.2
Q ss_pred HcCCCEEEecCCc-----ccCChhHHHHHHHHHHHc----CCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 112 QVGFDTIELNVGS-----LEIPEETLLRYVRLVKSA----GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 112 ~lGF~~IEISdGt-----i~i~~~~r~~lI~~~~~~----G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.|..+|-|=||. --+|.++.++-|+.+++. |.. |-+.- . .|. + +. ... ....
T Consensus 104 ~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~----~~v~a-R------td~-~---~~--g~~-~~~~ 165 (255)
T 2qiw_A 104 EAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVD----VVING-R------TDA-V---KL--GAD-VFED 165 (255)
T ss_dssp HTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCC----CEEEE-E------ECH-H---HH--CTT-TSSS
T ss_pred HcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCC----eEEEE-E------ech-h---hc--cCC-cchH
Confidence 4899999999986 235677788888888776 543 22210 0 010 0 00 000 0001
Q ss_pred cHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC-CCceE
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG-LEKTM 234 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~-~ekli 234 (289)
..++.|++++...+|||+.|.+|+- ...+++.+|.+.++ +-+++
T Consensus 166 ~~~~ai~ra~a~~eAGAd~i~~e~~--------~~~~~~~~i~~~~~~P~n~~ 210 (255)
T 2qiw_A 166 PMVEAIKRIKLMEQAGARSVYPVGL--------STAEQVERLVDAVSVPVNIT 210 (255)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCC--------CSHHHHHHHHTTCSSCBEEE
T ss_pred HHHHHHHHHHHHHHcCCcEEEEcCC--------CCHHHHHHHHHhCCCCEEEE
Confidence 2789999999999999999999973 23588999998887 44444
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=83.05 E-value=3.5 Score=36.90 Aligned_cols=163 Identities=15% Similarity=0.212 Sum_probs=89.6
Q ss_pred ccccccChhHHHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH
Q 022982 62 GSHSLMPKPFIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK 140 (289)
Q Consensus 62 GTs~l~p~~~l~eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~ 140 (289)
||--+|=++...+..+..++++| .|.-+. +++...+..+.|-+-|+++|||.-- ...-.+.|+.++
T Consensus 14 ~~~~~~~~~~m~~~~~~l~~~~vv~Vir~~--------~~~~a~~~a~al~~gGi~~iEvt~~-----t~~a~e~I~~l~ 80 (232)
T 4e38_A 14 GTENLYFQSMMSTINNQLKALKVIPVIAID--------NAEDIIPLGKVLAENGLPAAEITFR-----SDAAVEAIRLLR 80 (232)
T ss_dssp ------CCCCHHHHHHHHHHHCEEEEECCS--------SGGGHHHHHHHHHHTTCCEEEEETT-----STTHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhCCEEEEEEcC--------CHHHHHHHHHHHHHCCCCEEEEeCC-----CCCHHHHHHHHH
Confidence 55556655667777888888898 555452 2234556667788889999999433 334568888887
Q ss_pred HcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc-----------cc
Q 022982 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----------DV 209 (289)
Q Consensus 141 ~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-----------GI 209 (289)
+. .|+.-+ | - |..++ .++++..++|||+.|+.=+- |+
T Consensus 81 ~~----~~~~~i-------G--a----GTVlt---------------~~~a~~Ai~AGA~fIvsP~~~~~vi~~~~~~gi 128 (232)
T 4e38_A 81 QA----QPEMLI-------G--A----GTILN---------------GEQALAAKEAGATFVVSPGFNPNTVRACQEIGI 128 (232)
T ss_dssp HH----CTTCEE-------E--E----ECCCS---------------HHHHHHHHHHTCSEEECSSCCHHHHHHHHHHTC
T ss_pred Hh----CCCCEE-------e--E----CCcCC---------------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCC
Confidence 73 122222 1 0 11111 68899999999999985431 21
Q ss_pred ccCCCCccHHHHHHHHhccCCCceEEecCCchh-HHHHHHHh-C--CCccc---c-cCCCCchhhhhhhccc
Q 022982 210 CKHADSLRADIIAKVIGRLGLEKTMFEATNPRT-SEWFIRRY-G--PKVNL---F-VDHSQVMDLECLRGRN 273 (289)
Q Consensus 210 ~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~q-Q~~~I~~f-G--~~VNL---g-I~~~eVl~LE~LR~g~ 273 (289)
-==-|-...+++.+-+ +.|.+-|-+ =|-..+ =..||+.+ | |++.+ | |.++++- |.|..|.
T Consensus 129 ~~ipGv~TptEi~~A~-~~Gad~vK~-FPa~~~gG~~~lkal~~p~p~ip~~ptGGI~~~n~~--~~l~aGa 196 (232)
T 4e38_A 129 DIVPGVNNPSTVEAAL-EMGLTTLKF-FPAEASGGISMVKSLVGPYGDIRLMPTGGITPSNID--NYLAIPQ 196 (232)
T ss_dssp EEECEECSHHHHHHHH-HTTCCEEEE-CSTTTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHH--HHHTSTT
T ss_pred CEEcCCCCHHHHHHHH-HcCCCEEEE-CcCccccCHHHHHHHHHHhcCCCeeeEcCCCHHHHH--HHHHCCC
Confidence 1001222344444333 466666655 332222 13566654 3 36666 4 8877653 4455443
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=82.94 E-value=7.5 Score=36.77 Aligned_cols=146 Identities=17% Similarity=0.125 Sum_probs=96.3
Q ss_pred HHHHHHhhcccccEEEecCccccccCh----------hHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHH
Q 022982 43 LEDIFESMGQFVDGLKFSGGSHSLMPK----------PFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (289)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GTs~l~p~----------~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg~~~~~~yl~~~ 110 (289)
++..+++ =+|.+-+-..+|-+..+ +.+++-++.++++| +.|... +|.+...+++.+-+..+.+
T Consensus 80 i~~a~~~---g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~--~ed~~~~~~~~~~~~~~~~ 154 (382)
T 2ztj_A 80 AKVAVET---GVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFS--AEDTFRSEEQDLLAVYEAV 154 (382)
T ss_dssp HHHHHHT---TCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEE--ETTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHc---CCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEE--EEeCCCCCHHHHHHHHHHH
Confidence 4444543 35666666566643332 45788899999999 766542 1223344555677778888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
.+. .+.|=|.|-.--+.+.+-.++|+.+++. |. .-.+++.+. .+ ...-+-
T Consensus 155 ~~~-a~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~--~~~i~~H~H-nd-------------------------~GlAvA 205 (382)
T 2ztj_A 155 APY-VDRVGLADTVGVATPRQVYALVREVRRVVGP--RVDIEFHGH-ND-------------------------TGCAIA 205 (382)
T ss_dssp GGG-CSEEEEEETTSCCCHHHHHHHHHHHHHHHTT--TSEEEEEEB-CT-------------------------TSCHHH
T ss_pred HHh-cCEEEecCCCCCCCHHHHHHHHHHHHHhcCC--CCeEEEEeC-CC-------------------------ccHHHH
Confidence 899 9999998888888898888999999884 11 223555331 11 122367
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHH
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIA 222 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~ 222 (289)
.+...++|||+.|=.=-.|+=+..||...+.+-
T Consensus 206 N~laAv~aGa~~vd~tv~GlGeraGN~~lE~vv 238 (382)
T 2ztj_A 206 NAYEAIEAGATHVDTTILGIGERNGITPLGGFL 238 (382)
T ss_dssp HHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHH
T ss_pred HHHHHHHhCCCEEEEccccccccccchhHHHHH
Confidence 777889999996544445888899999987664
|
| >3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=82.79 E-value=3.9 Score=35.51 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=68.2
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCC-c------HHHH-------------HHHhCCc
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-D------WAEH-------------LIRNGPS 101 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-t------lfE~-------------a~~qg~~ 101 (289)
..=+.+..+| .|.+=+.+.....++++.+++..++++++|+.+..- . +... ...+.-+
T Consensus 25 ~~l~~~~~~G--~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~ 102 (290)
T 3tva_A 25 VHLEVAQDLK--VPTVQVHAPHPHTRTREHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVA 102 (290)
T ss_dssp BCHHHHHHTT--CSEEEEECCCGGGCSHHHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHH
T ss_pred HHHHHHHHcC--CCEEEecCCCCCcCCHHHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHH
Confidence 4444555555 677777764443455677999999999999976542 1 1110 0000012
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC-hhH-------HHHHHHHHHHcCCcccceee
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIP-EET-------LLRYVRLVKSAGLKAKPKFA 151 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~-~~~-------r~~lI~~~~~~G~~v~~E~g 151 (289)
.+++.++.|+++|.+.|=+..|...-. .+. ..++.+.+++.|+++.-|-.
T Consensus 103 ~~~~~i~~a~~lG~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~ 160 (290)
T 3tva_A 103 EMKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQAVHLETG 160 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 689999999999999999987765322 222 33455667777887655554
|
| >1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A | Back alignment and structure |
|---|
Probab=82.78 E-value=4.4 Score=37.43 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCEEEe------cCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 022982 104 KEYVEDCKQVGFDTIEL------NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEI------SdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (289)
++.++.+|++|+++|-+ +.|..+ .+.-++++++++++||+|.-.|...
T Consensus 30 ~~~~~ilk~~G~n~vRlri~v~P~~g~~d--~~~~~~~~~~ak~~Gl~v~ld~hys 83 (334)
T 1fob_A 30 QALETILADAGINSIRQRVWVNPSDGSYD--LDYNLELAKRVKAAGMSLYLDLHLS 83 (334)
T ss_dssp CCHHHHHHHHTCCEEEEEECSCCTTCTTC--HHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred chHHHHHHHcCCCEEEEEEEECCCCCccC--HHHHHHHHHHHHHCCCEEEEEeccC
Confidence 45688899999999999 355444 5667789999999999999988764
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=82.45 E-value=30 Score=31.80 Aligned_cols=146 Identities=10% Similarity=0.094 Sum_probs=88.3
Q ss_pred EEEecCccccccChh-HHHHHHHHHHhCCceecC----CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh
Q 022982 56 GLKFSGGSHSLMPKP-FIEEVVKRAHQHDVYVST----GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE 130 (289)
Q Consensus 56 ~lKfg~GTs~l~p~~-~l~eKI~l~~~~gV~v~~----GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~ 130 (289)
++-++-|+...++.+ ...--..++++++|+|.. |. + .+.+..|-+.||+.|=+.--.. |.+
T Consensus 46 Ilq~s~~~~~y~g~~~~~~~v~~~a~~~~VPValHlDHg~-----------~-~e~i~~ai~~GFtSVMiDgS~l--p~e 111 (286)
T 1gvf_A 46 ILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHE-----------S-LDDIRRKVHAGVRSAMIDGSHF--PFA 111 (286)
T ss_dssp EEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEEEEEEC-----------C-HHHHHHHHHTTCCEEEECCTTS--CHH
T ss_pred EEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEEEcCCCC-----------C-HHHHHHHHHcCCCeEEECCCCC--CHH
Confidence 355555554444422 223333455667776664 31 1 2556677789999998866554 444
Q ss_pred HH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 131 TL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 131 ~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
+= .++++.+...|.-|--|+|.= |-.+|..-. .. ..+ ...||++..+.++ +-|.|.+=+==
T Consensus 112 eNi~~Tk~vv~~ah~~gvsVEaElG~v------gg~ed~~~~---~~--~~~-~~T~Peea~~Fv~---~TgvD~LAvai 176 (286)
T 1gvf_A 112 ENVKLVKSVVDFCHSQDCSVEAELGRL------GGVEDDMSV---DA--ESA-FLTDPQEAKRFVE---LTGVDSLAVAI 176 (286)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESCC------C----------------CC-SSCCHHHHHHHHH---HHCCSEEEECS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEeec------cCcccCccc---cc--ccc-cCCCHHHHHHHHH---HHCCCEEEeec
Confidence 32 467788888999999999983 211221000 00 000 1126888877777 47888554432
Q ss_pred ---cccccCCCCccHHHHHHHHhccCC
Q 022982 207 ---DDVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 207 ---rGI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
-|+|..+-.++.|.+++|-+.+++
T Consensus 177 Gt~HG~Y~~~p~Ld~~~L~~I~~~~~v 203 (286)
T 1gvf_A 177 GTAHGLYSKTPKIDFQRLAEIREVVDV 203 (286)
T ss_dssp SCCSSCCSSCCCCCHHHHHHHHHHCCS
T ss_pred CccccCcCCCCccCHHHHHHHHHhcCC
Confidence 289998888999999999988763
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=82.33 E-value=12 Score=34.81 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=49.2
Q ss_pred HHHHH---HHHHHcCCCEEEecCCc-------c-----------cCChhHHH----HHHHHHHHcCCcccceeeeecCCC
Q 022982 103 FKEYV---EDCKQVGFDTIELNVGS-------L-----------EIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKS 157 (289)
Q Consensus 103 ~~~yl---~~~k~lGF~~IEISdGt-------i-----------~i~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~~ 157 (289)
+++|. +.|++.|||.|||.-+. + -=+.+.|. ++|+.+++.= ..-+++|....
T Consensus 143 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v---~~pv~vRls~~ 219 (340)
T 3gr7_A 143 VQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW---DGPLFVRISAS 219 (340)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC---CSCEEEEEESC
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc---CCceEEEeccc
Confidence 44554 45678899999998652 0 12345554 4555665531 12266665322
Q ss_pred CCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 158 DIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 158 evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
+ +...+. +.++.++.++..-++|+++|-+=.
T Consensus 220 ~-----------------~~~~g~-~~~~~~~la~~L~~~Gvd~i~vs~ 250 (340)
T 3gr7_A 220 D-----------------YHPDGL-TAKDYVPYAKRMKEQGVDLVDVSS 250 (340)
T ss_dssp C-----------------CSTTSC-CGGGHHHHHHHHHHTTCCEEEEEC
T ss_pred c-----------------ccCCCC-CHHHHHHHHHHHHHcCCCEEEEec
Confidence 1 111111 466678888888899999998843
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=82.21 E-value=2.5 Score=36.20 Aligned_cols=37 Identities=5% Similarity=-0.090 Sum_probs=28.3
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHH
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eK 75 (289)
.+....++++.+++|+|++|.|.|-+.-+..+.+++.
T Consensus 14 ~~~~~~~~~~~~~~~v~~~kv~~~~f~~~G~~~i~~l 50 (216)
T 1q6o_A 14 TMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDL 50 (216)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHH
T ss_pred CHHHHHHHHHHhcccCCEEEECHHHHHHhCHHHHHHH
Confidence 4567788889899999999999997765665655543
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=82.21 E-value=26 Score=31.00 Aligned_cols=102 Identities=16% Similarity=0.238 Sum_probs=63.2
Q ss_pred hhHHHHHHHhhccc-ccEEEecCccc-cccChhHHH-----------------HHHHHHHhC--CceecCCcHHHHHHHh
Q 022982 40 HNVLEDIFESMGQF-VDGLKFSGGSH-SLMPKPFIE-----------------EVVKRAHQH--DVYVSTGDWAEHLIRN 98 (289)
Q Consensus 40 ~~~~~DlLe~ag~y-ID~lKfg~GTs-~l~p~~~l~-----------------eKI~l~~~~--gV~v~~GtlfE~a~~q 98 (289)
+..+.++++..-+. +|.+-+|.=-+ .+++-..+. +-++-.+++ ++++-.=+...-++..
T Consensus 30 ~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~ 109 (268)
T 1qop_A 30 IEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNN 109 (268)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHh
Confidence 34555555554444 99999986221 122223333 445555665 3333210233344444
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022982 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
.+++|++.|.+.|.|.|=+.| ++.++..++++.++++|+++.+
T Consensus 110 ---g~~~~~~~~~~aGadgii~~d----~~~e~~~~~~~~~~~~g~~~i~ 152 (268)
T 1qop_A 110 ---GIDAFYARCEQVGVDSVLVAD----VPVEESAPFRQAALRHNIAPIF 152 (268)
T ss_dssp ---CHHHHHHHHHHHTCCEEEETT----CCGGGCHHHHHHHHHTTCEEEC
T ss_pred ---hHHHHHHHHHHcCCCEEEEcC----CCHHHHHHHHHHHHHcCCcEEE
Confidence 479999999999999888864 4456777899999999887543
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=82.12 E-value=0.86 Score=40.24 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=60.6
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHh-CCceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCC
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFD 116 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~-~gV~v~~Gt-lfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (289)
.+.....+++..++|+|++|+|.+-..-+..+.+++ .++ +|..+..-- +.. -|+.++.|.+.+.++|.|
T Consensus 23 ~~~~a~~~v~~~~~~v~~~Kvg~~lf~~~G~~~v~~----l~~~~g~~v~lD~Kl~D-----ipnTv~~~~~~~~~~gad 93 (228)
T 3m47_A 23 NRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAE----FRKRFGCRIIADFKVAD-----IPETNEKICRATFKAGAD 93 (228)
T ss_dssp SHHHHHHHHHTTTTTCSEEEEEHHHHHHHCTHHHHH----HHHHHCCEEEEEEEECS-----CHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHcCCcccEEEEcHHHHHhcCHHHHHH----HHhcCCCeEEEEEeecc-----cHhHHHHHHHHHHhCCCC
Confidence 567888999999999999999887765556565554 333 444443321 211 133567777777888888
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCC
Q 022982 117 TIELNVGSLEIPEETLLRYVRLVKSAGL 144 (289)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~ 144 (289)
.|-|.- ....+....+++.+++.|-
T Consensus 94 ~vtvh~---~~G~~~l~~~~~~~~~~g~ 118 (228)
T 3m47_A 94 AIIVHG---FPGADSVRACLNVAEEMGR 118 (228)
T ss_dssp EEEEES---TTCHHHHHHHHHHHHHHTC
T ss_pred EEEEec---cCCHHHHHHHHHHHHhcCC
Confidence 887753 2234555566777666553
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=82.11 E-value=1.1 Score=40.23 Aligned_cols=97 Identities=12% Similarity=0.199 Sum_probs=58.4
Q ss_pred HHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHc--CCcc
Q 022982 73 EEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSA--GLKA 146 (289)
Q Consensus 73 ~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~--G~~v 146 (289)
.+-++.++++|+++.|| |.-|+. .+.++|+|+|-+ .|.+. =..+|+.++.- ...+
T Consensus 117 ~~vi~~~~~~gi~~ipGv~TptEi~-------------~A~~~Gad~vK~------FPa~~~gG~~~lkal~~p~p~ip~ 177 (232)
T 4e38_A 117 PNTVRACQEIGIDIVPGVNNPSTVE-------------AALEMGLTTLKF------FPAEASGGISMVKSLVGPYGDIRL 177 (232)
T ss_dssp HHHHHHHHHHTCEEECEECSHHHHH-------------HHHHTTCCEEEE------CSTTTTTHHHHHHHHHTTCTTCEE
T ss_pred HHHHHHHHHcCCCEEcCCCCHHHHH-------------HHHHcCCCEEEE------CcCccccCHHHHHHHHHHhcCCCe
Confidence 45566677777777776 455543 235789999977 22222 13677777762 2333
Q ss_pred cceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccC----CCCccHHHHH
Q 022982 147 KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH----ADSLRADIIA 222 (289)
Q Consensus 147 ~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~----~G~~r~d~v~ 222 (289)
.|.=|+ + .+.+...|++||..+.+ +.-+++. +|+| +.|.
T Consensus 178 ~ptGGI-------------------~---------------~~n~~~~l~aGa~~~vg-Gs~l~~~~~i~~~~~--~~i~ 220 (232)
T 4e38_A 178 MPTGGI-------------------T---------------PSNIDNYLAIPQVLACG-GTWMVDKKLVTNGEW--DEIA 220 (232)
T ss_dssp EEBSSC-------------------C---------------TTTHHHHHTSTTBCCEE-ECGGGCHHHHHTTCH--HHHH
T ss_pred eeEcCC-------------------C---------------HHHHHHHHHCCCeEEEE-CchhcChHHhhcCCH--HHHH
Confidence 333233 0 25678899999999888 6667654 4553 4444
Q ss_pred HHH
Q 022982 223 KVI 225 (289)
Q Consensus 223 ~ii 225 (289)
+.+
T Consensus 221 ~~a 223 (232)
T 4e38_A 221 RLT 223 (232)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=81.54 E-value=2.5 Score=39.34 Aligned_cols=161 Identities=14% Similarity=0.124 Sum_probs=99.3
Q ss_pred CCCceeEecCCCCCCCchhHHHHHHHh-hcccccEEEecCccccccC-hhHHHHHHHHHHh-CCceec---C---Cc---
Q 022982 23 RFGVTEMRSPHYTLSSSHNVLEDIFES-MGQFVDGLKFSGGSHSLMP-KPFIEEVVKRAHQ-HDVYVS---T---GD--- 90 (289)
Q Consensus 23 ~~GlT~V~DkGl~~~~g~~~~~DlLe~-ag~yID~lKfg~GTs~l~p-~~~l~eKI~l~~~-~gV~v~---~---Gt--- 90 (289)
..|+-.++||-=. .+..+..+++. +-...|.+=+| |.-++. ++.+.+-++.+++ +++++. | |.
T Consensus 38 ~~~~~~liDPdK~---~~~~~~~~~~~~~~sGtDai~VG--S~~vt~~~~~~~~~v~~ik~~~~lPvil~fPP~~g~~~~ 112 (286)
T 3vk5_A 38 QPGPVHIIDPFKV---PVTEAVEKAAELTRLGFAAVLLA--STDYESFESHMEPYVAAVKAATPLPVVLHFPPRPGAGFP 112 (286)
T ss_dssp CCEEEEEECTTTS---CHHHHHHHHHHHHHTTCSCEEEE--CSCCSSHHHHHHHHHHHHHHHCSSCEEEECCCBTTTBSC
T ss_pred cCCceEEECCCCC---CcHHHHHHHHHHHhcCCCEEEEc--cCCCCcchHHHHHHHHHHHHhCCCCEEEECCCCCCCccc
Confidence 5688899999652 23333334443 44458999998 544540 5679999999999 787443 3 21
Q ss_pred --------------------H----HHHHHH---------------------h----------------CCchH--HHHH
Q 022982 91 --------------------W----AEHLIR---------------------N----------------GPSAF--KEYV 107 (289)
Q Consensus 91 --------------------l----fE~a~~---------------------q----------------g~~~~--~~yl 107 (289)
| +|+... - .++.. ..|-
T Consensus 113 i~~~aDa~l~psvlNs~n~~~i~g~~~~~~aa~~v~~~~~~~ge~ip~gYL~v~~g~k~V~fv~~~~~~~~e~A~~~aYa 192 (286)
T 3vk5_A 113 VVRGADALLLPALLGSGDDYFVWKSFLETLAAFPGRIPREEWPELLLTVALTFGEDPRTGDLLGTVPVSTASTEEIDRYL 192 (286)
T ss_dssp CCTTCSEEEEEEETTBSSHHHHTHHHHHHHHHCSTTSCGGGCCEEEEEEEEECSCCHHHHHHHCBCCCCCSSSHHHHHHH
T ss_pred cccCCCEEEEEEEecCCCcccccCcHHHHHHhHHHHHHHHHhCCcceEEEEEECCCCceeeeeCCCCCCCHHHHHHHHHH
Confidence 2 233321 0 12233 6899
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc---CCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA---GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~---G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
....++|+..|=+.-+.-. .-.++|+++++. ...+.--+|+. +
T Consensus 193 ~~gad~G~~lV~LD~~~~~----v~~e~V~~I~~~~~~~iPV~vGGGIr------------------s------------ 238 (286)
T 3vk5_A 193 HVARAFGFHMVYLYSRNEH----VPPEVVRHFRKGLGPDQVLFVSGNVR------------------S------------ 238 (286)
T ss_dssp HHHHHTTCSEEEEECSSSC----CCHHHHHHHHHHSCTTCEEEEESSCC------------------S------------
T ss_pred HHHHHcCCCEEEEcCCCCc----CCHHHHHHHHHhcCCCCCEEEEeCCC------------------C------------
Confidence 9999999999988865522 223677777764 12333333331 1
Q ss_pred HHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
.+++++.+++|||.|+|=+- ++++. -.+++.+++.+.+
T Consensus 239 ---~Eda~~ll~aGAD~VVVGSA-av~d~---~Pelv~e~a~~~~ 276 (286)
T 3vk5_A 239 ---GRQVTEYLDSGADYVGFAGA-LEQPD---WRSALAEIAGRRP 276 (286)
T ss_dssp ---HHHHHHHHHTTCSEEEESGG-GSSTT---HHHHHHHHHC---
T ss_pred ---HHHHHHHHHcCCCEEEECch-hhcCC---CHHHHHHHHHhCC
Confidence 57888899999999999664 33332 2477888886653
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=81.42 E-value=20 Score=30.21 Aligned_cols=122 Identities=13% Similarity=0.207 Sum_probs=70.8
Q ss_pred hhHHHHHHHhhcccccEEEecCccccccCh-hHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPK-PFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~l~p~-~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (289)
..+++.+++.-. |++=++ +.++.++ +.+.+-++.+|++ |..+..+. ...++ ...+.+.|.|
T Consensus 78 ~~~i~~~~~~Ga---d~v~l~--~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~----------~t~~e-~~~~~~~G~d 141 (223)
T 1y0e_A 78 SKEVDELIESQC---EVIALD--ATLQQRPKETLDELVSYIRTHAPNVEIMADI----------ATVEE-AKNAARLGFD 141 (223)
T ss_dssp HHHHHHHHHHTC---SEEEEE--CSCSCCSSSCHHHHHHHHHHHCTTSEEEEEC----------SSHHH-HHHHHHTTCS
T ss_pred HHHHHHHHhCCC---CEEEEe--eecccCcccCHHHHHHHHHHhCCCceEEecC----------CCHHH-HHHHHHcCCC
Confidence 345666555443 555554 4444433 4578888888888 87665431 12333 3347889999
Q ss_pred EEEecCC-cc----cCC-hhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 117 TIELNVG-SL----EIP-EETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 117 ~IEISdG-ti----~i~-~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
+|=++.. +. ... .....++++++++. +..+...=|+ .+ .+
T Consensus 142 ~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI-----------------------------~~----~~ 188 (223)
T 1y0e_A 142 YIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNV-----------------------------IT----PD 188 (223)
T ss_dssp EEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSC-----------------------------CS----HH
T ss_pred EEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCC-----------------------------CC----HH
Confidence 9987653 21 111 23345677777763 2222222122 01 46
Q ss_pred HHHHHHHccCcEEEEecccccc
Q 022982 190 RAERCLEAGADMIMIDSDDVCK 211 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d 211 (289)
.+++.+++||+.|++ ++.|++
T Consensus 189 ~~~~~~~~Gad~v~v-G~al~~ 209 (223)
T 1y0e_A 189 MYKRVMDLGVHCSVV-GGAITR 209 (223)
T ss_dssp HHHHHHHTTCSEEEE-CHHHHC
T ss_pred HHHHHHHcCCCEEEE-ChHHcC
Confidence 667778899999999 566876
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=81.21 E-value=9.8 Score=35.06 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=62.8
Q ss_pred HHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 022982 107 VEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
.+...+.|..+|-|=|+.. -+|.++.++-|+.+++.+- .+.|-++- ..|..
T Consensus 100 v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~--~~~~~i~a-------Rtda~------- 163 (295)
T 1s2w_A 100 VRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQT--DPDFCIVA-------RVEAF------- 163 (295)
T ss_dssp HHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCS--STTCEEEE-------EECTT-------
T ss_pred HHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcc--cCCcEEEE-------eehHH-------
Confidence 4444468999999999862 2678888888888887652 23344421 11210
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
+. ....++.|++++...+||||.|.+|+. -...+++.+|.+.++
T Consensus 164 --~a---~~g~~~ai~Ra~ay~eAGAd~i~~e~~-------~~~~~~~~~i~~~~~ 207 (295)
T 1s2w_A 164 --IA---GWGLDEALKRAEAYRNAGADAILMHSK-------KADPSDIEAFMKAWN 207 (295)
T ss_dssp --TT---TCCHHHHHHHHHHHHHTTCSEEEECCC-------SSSSHHHHHHHHHHT
T ss_pred --hc---cccHHHHHHHHHHHHHcCCCEEEEcCC-------CCCHHHHHHHHHHcC
Confidence 00 013689999999999999999999961 112456666776654
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=81.16 E-value=7.7 Score=35.55 Aligned_cols=147 Identities=16% Similarity=0.117 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.- =++.-=+|+ |
T Consensus 30 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv-------g----------------- 85 (309)
T 3fkr_A 30 SQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTT-------S----------------- 85 (309)
T ss_dssp HHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-------C-----------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEec-------C-----------------
Confidence 67788888888999998775333 4799999999999998841 011111122 1
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEec-------c---------------------ccccC---CCCccHHHHHHHHh
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDS-------D---------------------DVCKH---ADSLRADIIAKVIG 226 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEa-------r---------------------GI~d~---~G~~r~d~v~~ii~ 226 (289)
..+..+.|++++..-++|||.|++=. + -||+. .-++..+.+.++.+
T Consensus 86 ---~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~tg~~l~~~~~~~La~ 162 (309)
T 3fkr_A 86 ---HYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMAR 162 (309)
T ss_dssp ---CSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHHHH
T ss_pred ---CchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCHHHHHHHHh
Confidence 11477789999999999999998842 1 14553 23566777777775
Q ss_pred ccC-CCceEEecCC-chhHHHHHHHhCCCcccccCCCCch-hhhhhhcccCC
Q 022982 227 RLG-LEKTMFEATN-PRTSEWFIRRYGPKVNLFVDHSQVM-DLECLRGRNLG 275 (289)
Q Consensus 227 ~l~-~eklifEAP~-k~qQ~~~I~~fG~~VNLgI~~~eVl-~LE~LR~g~~G 275 (289)
..| +-=+=.|++. -.+-..+++..+.++....+-+|-+ -+++|..|--|
T Consensus 163 ~~pnIvgiK~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~~~l~~~l~~G~~G 214 (309)
T 3fkr_A 163 EIEQVAYFXIETPGAANKLRELIRLGGDAIEGPWDGEEAITLLADLHAGATG 214 (309)
T ss_dssp HSTTEEEEEECSSSHHHHHHHHHHHHGGGCCEEEECGGGTTHHHHHHTTCCE
T ss_pred hCCCEEEEECCCcchHHHHHHHHHhcCCceeeecCCchHHHHHHHHHCCCcE
Confidence 443 2112236654 3444556666554432112333443 35777766555
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=81.03 E-value=3.8 Score=36.25 Aligned_cols=131 Identities=17% Similarity=0.233 Sum_probs=71.4
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCce----ecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY----VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~----v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
+++.+.+.-+++|-+. .-+ +.+ .+.+-++.+|++|+. +.|+|-.|.. ++|++ +.|.
T Consensus 72 ~i~~~~~aGAd~itvh---~Ea--~~~--~~~~~i~~i~~~G~k~gv~lnp~tp~~~~--------~~~l~-----~~D~ 131 (231)
T 3ctl_A 72 YIAQLARAGADFITLH---PET--ING--QAFRLIDEIRRHDMKVGLILNPETPVEAM--------KYYIH-----KADK 131 (231)
T ss_dssp THHHHHHHTCSEEEEC---GGG--CTT--THHHHHHHHHHTTCEEEEEECTTCCGGGG--------TTTGG-----GCSE
T ss_pred HHHHHHHcCCCEEEEC---ccc--CCc--cHHHHHHHHHHcCCeEEEEEECCCcHHHH--------HHHHh-----cCCE
Confidence 6677776666666443 111 012 488999999999987 5678765533 33332 4667
Q ss_pred EE---ecCCccc---CC-hhHHHHHHHHHH-HcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 118 IE---LNVGSLE---IP-EETLLRYVRLVK-SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 118 IE---ISdGti~---i~-~~~r~~lI~~~~-~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
|- +.-|+-. +| .-+|.+-++... +.|+.+ .+.+-.+. . .+
T Consensus 132 VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~--~I~VdGGI---------------~---------------~~ 179 (231)
T 3ctl_A 132 ITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEY--EIEVDGSC---------------N---------------QA 179 (231)
T ss_dssp EEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCC--EEEEESCC---------------S---------------TT
T ss_pred EEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCc--eEEEECCc---------------C---------------HH
Confidence 75 4444331 22 223333344433 344432 24442211 0 24
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHH
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVI 225 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii 225 (289)
.+...++||||.+++=.+.||.+... ..+.++++-
T Consensus 180 ~~~~~~~aGAd~~V~G~saif~~~d~-~~~~~~~l~ 214 (231)
T 3ctl_A 180 TYEKLMAAGADVFIVGTSGLFNHAEN-IDEAWRIMT 214 (231)
T ss_dssp THHHHHHHTCCEEEECTTTTGGGCSS-HHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEccHHHhCCCCc-HHHHHHHHH
Confidence 55667899999988853789986432 234455553
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=80.87 E-value=9.3 Score=31.90 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=64.7
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
.+.+.+..++.-. |++ ++.+. + .+-++.+|++|+++.+|.. . .+-...+.++|.+.|
T Consensus 72 ~~~~~~~a~~~Ga---d~i-v~~~~----~----~~~~~~~~~~g~~vi~g~~----------t-~~e~~~a~~~Gad~v 128 (205)
T 1wa3_A 72 SVEQCRKAVESGA---EFI-VSPHL----D----EEISQFCKEKGVFYMPGVM----------T-PTELVKAMKLGHTIL 128 (205)
T ss_dssp SHHHHHHHHHHTC---SEE-ECSSC----C----HHHHHHHHHHTCEEECEEC----------S-HHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHcCC---CEE-EcCCC----C----HHHHHHHHHcCCcEECCcC----------C-HHHHHHHHHcCCCEE
Confidence 4556666666444 555 66542 3 3567789999999999731 1 112446688999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHH
Q 022982 119 ELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196 (289)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLe 196 (289)
-+.... ....+.++.+++. ...+.+.=|+ + .+.+...++
T Consensus 129 k~~~~~-----~~g~~~~~~l~~~~~~~pvia~GGI------------------------------~----~~~~~~~~~ 169 (205)
T 1wa3_A 129 KLFPGE-----VVGPQFVKAMKGPFPNVKFVPTGGV------------------------------N----LDNVCEWFK 169 (205)
T ss_dssp EETTHH-----HHHHHHHHHHHTTCTTCEEEEBSSC------------------------------C----TTTHHHHHH
T ss_pred EEcCcc-----ccCHHHHHHHHHhCCCCcEEEcCCC------------------------------C----HHHHHHHHH
Confidence 875421 1234566666652 1111111111 0 135566789
Q ss_pred ccCcEEEEecccccc
Q 022982 197 AGADMIMIDSDDVCK 211 (289)
Q Consensus 197 AGA~~ViiEarGI~d 211 (289)
+||+.|.+ ++.++.
T Consensus 170 ~Ga~~v~v-Gs~i~~ 183 (205)
T 1wa3_A 170 AGVLAVGV-GSALVK 183 (205)
T ss_dssp HTCSCEEE-CHHHHC
T ss_pred CCCCEEEE-CccccC
Confidence 99999988 455776
|
| >3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A | Back alignment and structure |
|---|
Probab=80.87 E-value=6.5 Score=36.18 Aligned_cols=99 Identities=18% Similarity=0.305 Sum_probs=57.7
Q ss_pred chhHHHHHHHhhcccc----------cEEEecCcccc-------ccChhHHHHHHHHHHhCCc---eecC-CcHHHHHHH
Q 022982 39 SHNVLEDIFESMGQFV----------DGLKFSGGSHS-------LMPKPFIEEVVKRAHQHDV---YVST-GDWAEHLIR 97 (289)
Q Consensus 39 g~~~~~DlLe~ag~yI----------D~lKfg~GTs~-------l~p~~~l~eKI~l~~~~gV---~v~~-GtlfE~a~~ 97 (289)
|..+.+.+|...-.+| -++|++.|-.+ ..| ++.-|+++++-|+ ++|| ||+--
T Consensus 123 gag~trg~L~~~~T~VNaLVSPTG~~G~VkISTGp~Sas~~~~~~V~---vetAiaml~dmG~~SvKffPM~Gl~~---- 195 (275)
T 3m6y_A 123 SVGATRANLGEKDSWINSLVSPTGKVGYVNISTGPISAAGEEKAIVP---IKTAIALVRDMGGNSLKYFPMKGLAH---- 195 (275)
T ss_dssp GHHHHHHHHTTCCCEEEEEEBCCSSTTEEECCCSTTGGGSSSCCEEE---HHHHHHHHHHHTCCEEEECCCTTTTT----
T ss_pred chHHHHhhcCCCccEEEEEEcCCCCcceEEeccCCCccccCCCceee---HHHHHHHHHHcCCCeeeEeecCCccc----
Confidence 5556666665444444 35678777322 333 6777777777776 6777 54310
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc-cccee
Q 022982 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK-AKPKF 150 (289)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~-v~~E~ 150 (289)
-+.+...-+.|.+-|| ++|=.-| |+.+...++++.+.++|-+ |.|.+
T Consensus 196 --leEl~avAkAca~~g~-~lEPTGG---Idl~Nf~~I~~i~l~aGv~~viPHI 243 (275)
T 3m6y_A 196 --EEEYRAVAKACAEEGF-ALEPTGG---IDKENFETIVRIALEANVEQVIPHV 243 (275)
T ss_dssp --HHHHHHHHHHHHHHTC-EEEEBSS---CCTTTHHHHHHHHHHTTCSCBCCEE
T ss_pred --HHHHHHHHHHHHHcCc-eECCCCC---ccHhHHHHHHHHHHHcCCCeecccc
Confidence 0023333456777777 7776544 4445555677777777765 66655
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=80.86 E-value=16 Score=33.34 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=63.2
Q ss_pred HHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHHHHc----CCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 022982 108 EDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLVKSA----GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti-----~i~~~~r~~lI~~~~~~----G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 178 (289)
+..-+.|..+|-|=|+.. -+|.++.++-|+.+++. |.. |-++- ..|. + .. .+..
T Consensus 99 ~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~----~~i~a-------Rtda-~---~~--~~g~ 161 (275)
T 2ze3_A 99 EHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVP----VFLNA-------RTDT-F---LK--GHGA 161 (275)
T ss_dssp HHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSC----CEEEE-------ECCT-T---TT--TCSS
T ss_pred HHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCC----eEEEE-------echh-h---hc--cccc
Confidence 334458999999999873 46777888888888775 433 33321 1111 0 00 0000
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
......++.|++++...+||||.|.+|+- ...+++.+|.+.++
T Consensus 162 ~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~--------~~~~~~~~i~~~~~ 204 (275)
T 2ze3_A 162 TDEERLAETVRRGQAYADAGADGIFVPLA--------LQSQDIRALADALR 204 (275)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCSEEECTTC--------CCHHHHHHHHHHCS
T ss_pred cchhhHHHHHHHHHHHHHCCCCEEEECCC--------CCHHHHHHHHHhcC
Confidence 00012689999999999999999999973 23578888888776
|
| >2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85, glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A {Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A* | Back alignment and structure |
|---|
Probab=80.83 E-value=3.9 Score=41.67 Aligned_cols=90 Identities=17% Similarity=0.327 Sum_probs=57.5
Q ss_pred hcccccEEEecCccc----cccChhHHHHHHHHHHhCCceecCCc-------------HHHHHHHhCCc----hHHHHHH
Q 022982 50 MGQFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVSTGD-------------WAEHLIRNGPS----AFKEYVE 108 (289)
Q Consensus 50 ag~yID~lKfg~GTs----~l~p~~~l~eKI~l~~~~gV~v~~Gt-------------lfE~a~~qg~~----~~~~yl~ 108 (289)
.=+|||..=. |+-+ .+.|+. -.-|+.||+|||+|. || |++-++.++.+ -+++.++
T Consensus 88 ~W~yvD~fvy-fshs~~~~~~~~P~--~~widaAHrnGV~Vl-Gt~~fe~~~~gg~~~~~~~lL~~~~~~~~~~a~kLv~ 163 (626)
T 2vtf_A 88 YWHYTDLMVY-WAGSAGEGIIVPPS--ADVIDASHRNGVPIL-GNVFFPPTVYGGQLEWLEQMLEQEEDGSFPLADKLLE 163 (626)
T ss_dssp CGGGCSEEEE-CCCBTTTBSEECCC--HHHHHHHHHTTCCEE-EEEEECCGGGTCCHHHHHHHTCCCTTCCCHHHHHHHH
T ss_pred cccceeeeee-ecCCCccceeeCCC--cHHHHHHHHcCCEEE-EEEecCcccCCcHHHHHHHHhccCccchHHHHHHHHH
Confidence 3368997643 4322 233322 457899999999886 32 45566645432 2799999
Q ss_pred HHHHcCCCEEEecCCcccCChhHH---HHHHHHHHHcC
Q 022982 109 DCKQVGFDTIELNVGSLEIPEETL---LRYVRLVKSAG 143 (289)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r---~~lI~~~~~~G 143 (289)
.|+.+|||.+=|+-=+-.++.+.. ..+++.+++.+
T Consensus 164 ~a~~yGFDGw~IN~E~~~~~~~~~~~l~~F~~~L~~~~ 201 (626)
T 2vtf_A 164 VADYYGFDGWFINQQTEGADEGTAEAMQAFLVYLQEQK 201 (626)
T ss_dssp HHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCceEEeeccccCCHHHHHHHHHHHHHHHHhC
Confidence 999999999888765534555544 44555555543
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=80.82 E-value=5.5 Score=37.10 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=67.8
Q ss_pred ccChhHHHHHHHHHHhCC-------cee--cCC--cHHHHHHHhCC--chHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 022982 66 LMPKPFIEEVVKRAHQHD-------VYV--STG--DWAEHLIRNGP--SAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 132 (289)
Q Consensus 66 l~p~~~l~eKI~l~~~~g-------V~v--~~G--tlfE~a~~qg~--~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r 132 (289)
...++.++.-++.+++++ |.+ +++ .|-|. .+++ +.+.++-+.+++.|++.|-.|. .+
T Consensus 112 ~~G~~~m~aa~e~a~~~~~~~~llaVtvLTS~s~~~l~~l--~~~~~~e~V~~lA~~a~~~G~dGvV~s~------~E-- 181 (303)
T 3ru6_A 112 SAGKIAIQEVMTRLSKFSKRPLVLAVSALTSFDEENFFSI--YRQKIEEAVINFSKISYENGLDGMVCSV------FE-- 181 (303)
T ss_dssp GGCHHHHHHHHHHHTTSSSCCEEEEECSCTTCCHHHHHHH--HSSCHHHHHHHHHHHHHHTTCSEEECCT------TT--
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHH--HcCCHHHHHHHHHHHHHHcCCCEEEECH------HH--
Confidence 445667777777777765 212 333 35443 2330 1233455677888988765532 22
Q ss_pred HHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecccccc
Q 022982 133 LRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 211 (289)
Q Consensus 133 ~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d 211 (289)
.+.||.....+|. |-|=++.+ .+. . +-+.++..+...++|||+++++ +|+||.
T Consensus 182 ~~~IR~~~~~~fl~VTPGIr~q--G~~---~--------------------~DQ~Rv~t~~~a~~aGAd~iVv-Gr~I~~ 235 (303)
T 3ru6_A 182 SKKIKEHTSSNFLTLTPGIRPF--GET---N--------------------DDQKRVANLAMARENLSDYIVV-GRPIYK 235 (303)
T ss_dssp HHHHHHHSCTTSEEEECCCCTT--C-------------------------------CCSHHHHHHTTCSEEEE-CHHHHT
T ss_pred HHHHHHhCCCccEEECCCcCcc--cCC---c--------------------ccccccCCHHHHHHcCCCEEEE-ChHHhC
Confidence 3466655544553 34433321 111 1 1233445666678999997655 799999
Q ss_pred CCCCccHHHHHHHHhccCCCceEEecC
Q 022982 212 HADSLRADIIAKVIGRLGLEKTMFEAT 238 (289)
Q Consensus 212 ~~G~~r~d~v~~ii~~l~~eklifEAP 238 (289)
+... ...+++|.+.+.- |=||++.
T Consensus 236 a~dp--~~a~~~i~~~i~~-~~~~~~~ 259 (303)
T 3ru6_A 236 NENP--RAVCEKILNKIHR-KNISEND 259 (303)
T ss_dssp SSCH--HHHHHHHHHHHC---------
T ss_pred CCCH--HHHHHHHHHHHHh-ccccccc
Confidence 8753 3455666655553 2334443
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=80.68 E-value=2.4 Score=39.50 Aligned_cols=132 Identities=14% Similarity=0.192 Sum_probs=77.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
+.+-.+...+.|..+|-|=|... -+|.++.++-|+.+++.-=..-++|-+- . .-|. +
T Consensus 97 v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~---A----RTDa-~---- 164 (302)
T 3fa4_A 97 VARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVI---A----RTDS-L---- 164 (302)
T ss_dssp HHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEE---E----EECC-H----
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEE---E----Eecc-c----
Confidence 44445666678999999988764 3677776666666655200001233331 1 1121 1
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceE---EecCC-chhHHHHH
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM---FEATN-PRTSEWFI 247 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ekli---fEAP~-k~qQ~~~I 247 (289)
+ ....++.|++++...+||||.|.+|+- -..+.+.+|.+.++.--++ .|-+. |..-..=+
T Consensus 165 ----~----~~gldeAi~Ra~ay~eAGAD~ifi~g~--------~~~~ei~~~~~~~~~~Pl~~n~~~~g~~p~~~~~eL 228 (302)
T 3fa4_A 165 ----Q----THGYEESVARLRAARDAGADVGFLEGI--------TSREMARQVIQDLAGWPLLLNMVEHGATPSISAAEA 228 (302)
T ss_dssp ----H----HHCHHHHHHHHHHHHTTTCSEEEETTC--------CCHHHHHHHHHHTTTSCEEEECCTTSSSCCCCHHHH
T ss_pred ----c----cCCHHHHHHHHHHHHHcCCCEEeecCC--------CCHHHHHHHHHHhcCCceeEEEecCCCCCCCCHHHH
Confidence 0 124789999999999999999999983 1356788888877422222 34321 22223335
Q ss_pred HHhCCCcccccCCCCch
Q 022982 248 RRYGPKVNLFVDHSQVM 264 (289)
Q Consensus 248 ~~fG~~VNLgI~~~eVl 264 (289)
...| ||+-|=|...+
T Consensus 229 ~~lG--v~~v~~~~~~~ 243 (302)
T 3fa4_A 229 KEMG--FRIIIFPFAAL 243 (302)
T ss_dssp HHHT--CSEEEETTTTH
T ss_pred HHcC--CCEEEEchHHH
Confidence 6667 45653333333
|
| >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=80.65 E-value=24 Score=29.99 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=92.9
Q ss_pred CCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccC----hhHHHHHHHHHHhC--Cceec--CC-cH-
Q 022982 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP----KPFIEEVVKRAHQH--DVYVS--TG-DW- 91 (289)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p----~~~l~eKI~l~~~~--gV~v~--~G-tl- 91 (289)
+..|+|.+++.|.. +...+.+++.+-.|=+ +..+.|.+.... ++.+++.-+++.++ .+.-. .| .+
T Consensus 29 ~~~Gv~~~v~~~~~----~~~~~~~~~l~~~~~~-~~~~~G~hP~~~~~~~~~~~~~l~~~~~~~~~~~~~iGEiGld~~ 103 (259)
T 1zzm_A 29 AQAGVGKIIVPATE----AENFARVLALAENYQP-LYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLF 103 (259)
T ss_dssp HHTTEEEEEEECCS----GGGHHHHHHHHHHCTT-EEEEECCCGGGGGGCCHHHHHHHHHHHHHCCSSEEEEEEEEEECC
T ss_pred HHcCCCEEEEecCC----HHHHHHHHHHHHhCCC-eEEEEEecccccccCCHHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence 45799999988873 4566777777777766 667777654332 23455555566552 22111 01 11
Q ss_pred --HH-HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022982 92 --AE-HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (289)
Q Consensus 92 --fE-~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 168 (289)
.+ ...+.. .|...++.|+++|...+ |-.+. ..+ ++++.+++.+..+ - ++-...+ |
T Consensus 104 ~~~~~~~~q~~--~f~~~~~~a~~~~~Pv~-iH~~~---a~~---~~~~il~~~~~~~--~-~i~H~~~--g-------- 161 (259)
T 1zzm_A 104 GDDPQFERQQW--LLDEQLKLAKRYDLPVI-LHSRR---THD---KLAMHLKRHDLPR--T-GVVHGFS--G-------- 161 (259)
T ss_dssp SSCCCHHHHHH--HHHHHHHHHHHTTCCEE-EEEES---CHH---HHHHHHHHHCCTT--C-EEETTCC--S--------
T ss_pred CCCCCHHHHHH--HHHHHHHHHHHhCCcEE-EEecc---cHH---HHHHHHHhcCCCC--C-EEEEcCC--C--------
Confidence 00 122333 78899999999998865 33322 233 4555556654321 0 1111110 0
Q ss_pred cccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCc
Q 022982 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k 240 (289)
+ .+.+++.++.|.+.-+ -+.-.|.+ ...+.++++.+|++||+||..-|
T Consensus 162 --------------~----~~~~~~~~~~g~~i~~-~g~~~~~~-----~~~~~~~~~~~~~dril~eTD~P 209 (259)
T 1zzm_A 162 --------------S----LQQAERFVQLGYKIGV-GGTITYPR-----ASKTRDVIAKLPLASLLLETDAP 209 (259)
T ss_dssp --------------C----HHHHHHHHHTTCEEEE-CGGGGCTT-----TCSHHHHHHHSCGGGEEECCCBT
T ss_pred --------------C----HHHHHHHHHCCCEEEE-Cceeeccc-----cHHHHHHHHhCCHHHEEEecCCC
Confidence 1 2456666778865543 12111222 23366778889999999998765
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=80.29 E-value=10 Score=35.88 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=60.0
Q ss_pred cChhHHHHHHHHHHhCC---ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe--cCCcccCChhHHHHHHHHHHH
Q 022982 67 MPKPFIEEVVKRAHQHD---VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL--NVGSLEIPEETLLRYVRLVKS 141 (289)
Q Consensus 67 ~p~~~l~eKI~l~~~~g---V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI--SdGti~i~~~~r~~lI~~~~~ 141 (289)
++.+.+.+-|+..++++ |-...|+ . ....+.++.+.+.|.+.|+| +.| +.+...+.|+.+++
T Consensus 79 ~s~e~~~~~i~~vk~~~~l~vga~vg~-------~--~~~~~~~~~lieaGvd~I~idta~G----~~~~~~~~I~~ik~ 145 (366)
T 4fo4_A 79 MSIEQQAAQVHQVKISGGLRVGAAVGA-------A--PGNEERVKALVEAGVDVLLIDSSHG----HSEGVLQRIRETRA 145 (366)
T ss_dssp SCHHHHHHHHHHHHTTTSCCCEEECCS-------C--TTCHHHHHHHHHTTCSEEEEECSCT----TSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCceeEEEEecc-------C--hhHHHHHHHHHhCCCCEEEEeCCCC----CCHHHHHHHHHHHH
Confidence 45666888888888764 3222232 1 24677889999999999998 334 23456678888888
Q ss_pred c--CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 142 A--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 142 ~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
. +..|.. | + ..+ .+.+++..+||||.|.+
T Consensus 146 ~~p~v~Vi~--G--~---------------v~t---------------~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 146 AYPHLEIIG--G--N---------------VAT---------------AEGARALIEAGVSAVKV 176 (366)
T ss_dssp HCTTCEEEE--E--E---------------ECS---------------HHHHHHHHHHTCSEEEE
T ss_pred hcCCCceEe--e--e---------------eCC---------------HHHHHHHHHcCCCEEEE
Confidence 5 222211 1 0 001 46778888999999999
|
| >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=80.16 E-value=25 Score=29.99 Aligned_cols=169 Identities=15% Similarity=0.124 Sum_probs=92.4
Q ss_pred CCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccC----hhHHHHHHHHHHhCCceecC--C-cHH--
Q 022982 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP----KPFIEEVVKRAHQHDVYVST--G-DWA-- 92 (289)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p----~~~l~eKI~l~~~~gV~v~~--G-tlf-- 92 (289)
+..|++.++..+. .+...+.+++.+..|=++ ..+.|-+.... ++.+++.-+++.+..+.-.. | .+.
T Consensus 29 ~~~Gv~~~v~~~~----~~~~~~~~~~l~~~~~~i-~~~~G~hP~~~~~~~~~~~~~l~~~~~~~~~~~iGE~Gld~~~~ 103 (264)
T 1xwy_A 29 FDAGVNGLLITGT----NLRESQQAQKLARQYSSC-WSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRN 103 (264)
T ss_dssp HHTTCCEEEECCC----SHHHHHHHHHHHHHSTTE-EEEECCCGGGGGGCCHHHHHHHHHHHTSTTEEEEEEEEEETTTC
T ss_pred HHCCCCEEEEeCC----CHHHHHHHHHHHHhCCCE-EEEEEECCcccccCCHHHHHHHHHHhcCCCeEEEEEeccCCCCC
Confidence 4579999999887 566788888888887664 34555433222 23355555555433332110 2 110
Q ss_pred -H-HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceee-eecCCCCCCCcccccccc
Q 022982 93 -E-HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA-VMFNKSDIPSDRDRAFGA 169 (289)
Q Consensus 93 -E-~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g-~k~~~~evg~~~d~~~~~ 169 (289)
+ ...++. .|...++.|+++|...+==+.. ..+ ++++.+++.+.. ..+ +-...+ |
T Consensus 104 ~~~~~~q~~--~f~~~l~~a~~~~lpv~iH~~~----a~~---~~~~il~~~~~~---~~~~v~H~~~--g--------- 160 (264)
T 1xwy_A 104 FSTPEEQER--AFVAQLRIAADLNMPVFMHCRD----AHE---RFMTLLEPWLDK---LPGAVLHCFT--G--------- 160 (264)
T ss_dssp SSCHHHHHH--HHHHHHHHHHHHTCCEEEEEES----CHH---HHHHHHGGGGGG---SSCEEECSCC--C---------
T ss_pred CCcHHHHHH--HHHHHHHHHHHhCCcEEEEcCC----chH---HHHHHHHhcCCC---CCcEEEEccC--C---------
Confidence 1 112222 5889999999999987633322 122 445555554321 111 111000 0
Q ss_pred ccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCc
Q 022982 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k 240 (289)
+ .+.+++.++.|.+.=+ .|.... .-+.+.+.++++.+|++|||||..-|
T Consensus 161 -------------~----~~~~~~~~~~g~yi~~---~g~~~~--~~~~~~l~~~~~~~~~drll~eTD~P 209 (264)
T 1xwy_A 161 -------------T----REEMQACVAHGIYIGI---TGWVCD--ERRGLELRELLPLIPAEKLLIETDAP 209 (264)
T ss_dssp -------------C----HHHHHHHHHTTCEEEE---CGGGGC--TTTSHHHHHHGGGSCGGGEEECCCTT
T ss_pred -------------C----HHHHHHHHHCCeEEEE---CccccC--CcCcHHHHHHHHhCCHHHEEEecCCC
Confidence 1 2455666777754332 343220 01245677899999999999998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 289 | ||||
| d1qwga_ | 251 | c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase | 1e-73 | |
| d1u83a_ | 249 | c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase | 2e-65 |
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 224 bits (572), Expect = 1e-73
Identities = 50/259 (19%), Positives = 104/259 (40%), Gaps = 35/259 (13%)
Query: 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRA 79
+ + G+T + +ED + G ++D +KF G+ +++ + ++E +
Sbjct: 9 EDFQRGLTVVLDKGLPPKF----VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYY 64
Query: 80 HQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRL 138
+ V G E+ G F E++ +C+++GF+ +E++ GS +I E ++
Sbjct: 65 KDWGIKVYPGGTLFEYAYSKGK--FDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKR 122
Query: 139 VKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198
K G + D +D I+ L+AG
Sbjct: 123 AKDNGFMVLTEVGKKMPDKDKQL---------------------TIDDRIKLINFDLDAG 161
Query: 199 ADMIMIDSDD------VCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGP 252
AD ++I+ + + ++ + + + + + K +FEA FI ++G
Sbjct: 162 ADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFILKFGS 221
Query: 253 KVNLF-VDHSQVMDLECLR 270
VNL + +V+ LE LR
Sbjct: 222 SVNLANIAFDEVISLETLR 240
|
| >d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Bacillus subtilis [TaxId: 1423]
Score = 203 bits (518), Expect = 2e-65
Identities = 54/264 (20%), Positives = 104/264 (39%), Gaps = 40/264 (15%)
Query: 16 DRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75
R KPR G + + Y L +D ++D +KF G+ L +EE
Sbjct: 8 VRTNKPRETGQSILIDNGYPLQF----FKDAIAGASDYIDFVKFGWGTSLLTKD--LEEK 61
Query: 76 VKRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL 133
+ +HD+ G + +++ + E+ C G + IE++ G+L + +
Sbjct: 62 ISTLKEHDITFFFGGTLFEKYVSQKK---VNEFHRYCTYFGCEYIEISNGTLPMTNKEKA 118
Query: 134 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 193
Y+ + + A +A S E++E
Sbjct: 119 AYIADFS---------------DEFLVLSEVGSKDAELASRQSSEEWLE-------YIVE 156
Query: 194 CLEAGADMIMIDSDD-----VCKHADSLRADIIAKVIGR-LGLEKTMFEATNPRTSEWFI 247
+EAGA+ ++ ++ + +C + +R I+ +I + + + +FEA N + FI
Sbjct: 157 DMEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTLQQGFI 216
Query: 248 RRYGPKVNLF-VDHSQVMDLECLR 270
++ GP VNL + + LE LR
Sbjct: 217 QKIGPNVNLANIPFHDAIALETLR 240
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 289 | |||
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 100.0 | |
| d1u83a_ | 249 | (2r)-phospho-3-sulfolactate synthase ComA {Bacillu | 100.0 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 96.87 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 95.67 | |
| d1yx1a1 | 250 | Hypothetical protein PA2260 {Pseudomonas aeruginos | 95.43 | |
| d2q02a1 | 271 | Putative cytoplasmic protein STM4435 {Salmonella t | 95.19 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 94.31 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 94.12 | |
| d1dqwa_ | 267 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 93.72 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 93.44 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 93.16 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 93.0 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 92.99 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 92.42 | |
| d1qtwa_ | 285 | Endonuclease IV {Escherichia coli [TaxId: 562]} | 92.28 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 92.1 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 91.17 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 90.97 | |
| d1i60a_ | 278 | Hypothetical protein IolI {Bacillus subtilis [TaxI | 90.05 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 89.54 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 89.48 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 88.2 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 87.91 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 87.8 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 87.48 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 86.98 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 86.95 | |
| d1j6oa_ | 260 | Hypothetical protein TM0667 {Thermotoga maritima [ | 86.85 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 86.84 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 86.8 | |
| d1i60a_ | 278 | Hypothetical protein IolI {Bacillus subtilis [TaxI | 86.75 | |
| d2g0wa1 | 275 | Hypothetical protein Lmo2234 {Listeria monocytogen | 86.46 | |
| d2bufa1 | 300 | N-acetyl-l-glutamate kinase {Pseudomonas aeruginos | 86.23 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 85.82 | |
| d1ht6a2 | 347 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 85.72 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 85.49 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 84.66 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 84.66 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 84.53 | |
| d1k77a_ | 260 | Hypothetical protein YgbM (EC1530) {Escherichia co | 84.27 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 84.23 | |
| d1kwga2 | 393 | A4 beta-galactosidase {Thermus thermophilus [TaxId | 84.15 | |
| d1zzma1 | 259 | Putative deoxyribonuclease YjjV {Escherichia coli | 84.06 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 83.98 | |
| d1yixa1 | 265 | Putative deoxyribonuclease YcfH {Escherichia coli | 83.98 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 83.93 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 83.23 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 82.76 | |
| d1hjsa_ | 332 | Beta-1,4-galactanase {Thielavia heterothallica, ak | 82.61 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 82.48 | |
| d1xwya1 | 260 | Deoxyribonuclease TatD (MttC) {Escherichia coli [T | 82.41 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 81.76 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 81.4 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 80.85 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 80.84 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 80.81 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 80.78 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 80.25 |
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.7e-87 Score=614.65 Aligned_cols=233 Identities=22% Similarity=0.400 Sum_probs=221.6
Q ss_pred CCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHh
Q 022982 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRN 98 (289)
Q Consensus 20 KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~q 98 (289)
|||++|+|||+|||+ |+++++|+|++||+|||++||||||++|||++.|++||++||+|||+||+| ||||+|+.|
T Consensus 9 ~~~~~GlTmv~DkGl----gl~~leD~Le~ag~yID~~K~g~Gt~~l~p~~~l~eKI~l~~~~~V~v~~GGtlfE~a~~q 84 (251)
T d1qwga_ 9 EDFQRGLTVVLDKGL----PPKFVEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSK 84 (251)
T ss_dssp CCCCCCCEEEEESSC----CHHHHHHHHHHHGGGCSEEEECTTGGGGSCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHT
T ss_pred CCccCCcEEEeeCCC----CHHHHHHHHHhhhhheeEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHHc
Confidence 999999999999999 888999999999999999999999999999999999999999999999997 799999999
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 022982 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 178 (289)
| ++++|+++|++|||++|||||||++||+++|+++|++++++||+|+||+|+|++.+ |..
T Consensus 85 g--~~~~y~~~~~~lGf~~iEiSdg~~~i~~~~~~~~I~~~~~~G~~V~~EvG~K~~~~------~~~------------ 144 (251)
T d1qwga_ 85 G--KFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDK------DKQ------------ 144 (251)
T ss_dssp T--CHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHH------HTT------------
T ss_pred C--CHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCEEeecccCCCCCC------ccc------------
Confidence 9 99999999999999999999999999999999999999999999999999997532 111
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEecc------ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCC
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGP 252 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEar------GI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~qQ~~~I~~fG~ 252 (289)
.+++++|+++++||+||||+|||||| |||+++|++|++++++|++++|++|+|||||+|+||+|||++|||
T Consensus 145 ---~~~~~~i~~~~~~LeaGA~~ViiEarEsg~~~Gi~~~~g~~r~~~i~~i~~~l~~~kiifEAP~k~~q~w~I~~fGp 221 (251)
T d1qwga_ 145 ---LTIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFILKFGS 221 (251)
T ss_dssp ---CCHHHHHHHHHHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEEECCSHHHHHHHHHHHCT
T ss_pred ---cCHHHHHHHHHHHHHCCCceeEeehhhcCCccceecCCCChhHHHHHHHHHhCCcccEEEECCChhHHHHHHHHhCC
Confidence 14899999999999999999999987 799999999999999999999999999999999999999999999
Q ss_pred Ccccc-cCCCCchhhhhhhcccCCCccc
Q 022982 253 KVNLF-VDHSQVMDLECLRGRNLGKSHR 279 (289)
Q Consensus 253 ~VNLg-I~~~eVl~LE~LR~g~~G~~~~ 279 (289)
||||| |+|+||++|||||+|++|.+..
T Consensus 222 ~VNL~NI~~~~vi~LE~LR~GLrgdT~g 249 (251)
T d1qwga_ 222 SVNLANIAFDEVISLETLRRGLRGDTFG 249 (251)
T ss_dssp TCCEEEEEGGGHHHHHHHHHTCSGGGTT
T ss_pred CcccccCCHHHHhHHHHHhcCCCccccc
Confidence 99999 9999999999999888886653
|
| >d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=5.5e-87 Score=610.63 Aligned_cols=238 Identities=21% Similarity=0.372 Sum_probs=209.5
Q ss_pred c-CCCCCCCCCCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCC
Q 022982 11 F-DEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG 89 (289)
Q Consensus 11 f-~~~~~R~~KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G 89 (289)
| +++|+|++|||++|+|||+|||| |+++++|+|++||+|||++||||||++++| .|++||++||+|||+||+|
T Consensus 2 f~l~lp~R~~KPR~~GlT~v~D~Gl----~l~~leD~Le~~g~yID~vK~g~Gts~l~~--~L~eKI~l~~~~~V~v~~G 75 (249)
T d1u83a_ 2 FSLELPVRTNKPRETGQSILIDNGY----PLQFFKDAIAGASDYIDFVKFGWGTSLLTK--DLEEKISTLKEHDITFFFG 75 (249)
T ss_dssp CCCCCCCCCCSSCSSSCEEEEESSC----CHHHHHHHHHHHGGGCCEEEECTTGGGGCT--THHHHHHHHHHTTCEEEEC
T ss_pred CCCCCCCCCCCCcccCceEEecCCC----CHHHHHHHHHhhhhheeEEEecCceeccCH--HHHHHHHHHHHcCCeEeCC
Confidence 5 68999999999999999999999 788999999999999999999999999999 5999999999999999997
Q ss_pred -cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022982 90 -DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (289)
Q Consensus 90 -tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 168 (289)
||||+|+.|| ++++|+++|++|||++|||||||++||+++|+++|+++++ +|.|++|+|+|++.. +.
T Consensus 76 GtlfE~a~~~~--~~~~y~~~~~~lGf~~iEiSdg~i~i~~~~~~~~I~~~~~-~~~V~sEvG~K~~~~------~~--- 143 (249)
T d1u83a_ 76 GTLFEKYVSQK--KVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSD-EFLVLSEVGSKDAEL------AS--- 143 (249)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTT-TSEEEEECSCCC--------------
T ss_pred CHHHHHHHHcC--CHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHh-cCeeccccCCcCccc------cC---
Confidence 6999999999 9999999999999999999999999999999999999998 678999999987531 11
Q ss_pred cccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc-----ccccCCCCccHHHHHHHHhc-cCCCceEEecCCchh
Q 022982 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGR-LGLEKTMFEATNPRT 242 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-----GI~d~~G~~r~d~v~~ii~~-l~~eklifEAP~k~q 242 (289)
..+++++|++++++|+||||+||+||| |||+++|++|++++++|+++ +|++|||||||+|+|
T Consensus 144 ------------~~~~~~~i~~~~~~LeaGA~~ViiEarEsg~~Gi~~~~g~~r~~~i~~ii~~~~~~~~iifEAp~k~~ 211 (249)
T d1u83a_ 144 ------------RQSSEEWLEYIVEDMEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTL 211 (249)
T ss_dssp -------------CCSTHHHHHHHHHHHHTEEEEEEC------------------CCHHHHHTTTSCGGGEEEECCSHHH
T ss_pred ------------CCCHHHHHHHHHHHHHCCCceEEeehhccCCCCCcCCCcchhHHHHHHHHHhcCChhhEEEeCCCHHH
Confidence 013677899999999999999999998 79999999999999999985 999999999999999
Q ss_pred HHHHHHHhCCCcccc-cCCCCchhhhhhhcccCCCcc
Q 022982 243 SEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSH 278 (289)
Q Consensus 243 Q~~~I~~fG~~VNLg-I~~~eVl~LE~LR~g~~G~~~ 278 (289)
|+|||++|||||||| |+|+||++|||||+|++|.++
T Consensus 212 q~~~I~~~G~~VNL~NI~~~~vi~LE~lR~GLRgDt~ 248 (249)
T d1u83a_ 212 QQGFIQKIGPNVNLANIPFHDAIALETLRLGLRSDTF 248 (249)
T ss_dssp HHHHHHHHCTTCCEEEEEGGGHHHHHHHHTTCSGGGC
T ss_pred HHHHHHHhCCCcccccCCHHHHHHHHHHhcccccccc
Confidence 999999999999999 999999999999999999764
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=96.87 E-value=0.0024 Score=54.99 Aligned_cols=168 Identities=11% Similarity=0.083 Sum_probs=117.0
Q ss_pred CCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch
Q 022982 23 RFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA 102 (289)
Q Consensus 23 ~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~ 102 (289)
...+..+.+.+.. ..+++....-..+|.+......+ .-+.+++-++.++++|+.+..+ ++.+-...++.
T Consensus 81 ~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~~~~~a~~~g~~~~~~--~~~~~~~~~~~ 149 (289)
T d1nvma2 81 HAQIATLLLPGIG------SVHDLKNAYQAGARVVRVATHCT---EADVSKQHIEYARNLGMDTVGF--LMMSHMIPAEK 149 (289)
T ss_dssp SSEEEEEECBTTB------CHHHHHHHHHHTCCEEEEEEETT---CGGGGHHHHHHHHHHTCEEEEE--EESTTSSCHHH
T ss_pred hhHHHHHHhhhhh------hHHHHHHHHHhcccceEEEeehh---hhhhHhHHHHHHHHhCCceeeE--eeeccccCchh
Confidence 3467777777662 34455555555778777765444 3446888999999999866532 11111223346
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.+..+.+.++|++.|-++|-.-.+.+++-.++++.+++.. .....+|..+. ..
T Consensus 150 ~~~~~~~~~~~g~~~I~l~DT~G~~~P~~v~~~v~~l~~~~-~~~~~i~~H~H-n~------------------------ 203 (289)
T d1nvma2 150 LAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVL-KPETQVGMHAH-HN------------------------ 203 (289)
T ss_dssp HHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHS-CTTSEEEEECB-CT------------------------
T ss_pred hhHHHHhhccccceeeeecchhhcccchhHHHHHHHHHHHh-cccccceeeec-hH------------------------
Confidence 77888999999999999999999999999999999998852 11223555331 11
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhccCC
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
....+..+...++|||++ |++- |+=+..||.-++.+-..+.+.|.
T Consensus 204 -~g~a~an~l~A~~~G~~~--id~si~GlG~~~GN~~tE~lv~~l~~~g~ 250 (289)
T d1nvma2 204 -LSLGVANSIVAVEEGCDR--VDASLAGMGAGAGNAPLEVFIAVAERLGW 250 (289)
T ss_dssp -TSCHHHHHHHHHHTTCCE--EEEBGGGCSSTTCBCBHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHHHHHhCCcE--eeccccccCCCCCCccHHHHHHHHHhcCC
Confidence 122367777899999996 5887 88889999999877767666553
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=95.67 E-value=0.15 Score=43.54 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=104.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.++++++++.+.|++.+=+.-.+ ..|+.++|.++++.+.+. +=++.-=+|+ +
T Consensus 24 ~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv-------~---------------- 80 (292)
T d1xkya1 24 AKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGT-------G---------------- 80 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-------C----------------
T ss_pred HHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEec-------C----------------
Confidence 368899999999999999884433 489999999999999873 1111111122 0
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~----~G~~r~d~v~~ii~~ 227 (289)
..+..+.|++++..-++||+.|++=.- -||+. .-.+..+.+.++.+
T Consensus 81 ----~~s~~~~i~~a~~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~- 155 (292)
T d1xkya1 81 ----SNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE- 155 (292)
T ss_dssp ----CSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT-
T ss_pred ----cccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccCHHHHhhhcc-
Confidence 114788899999999999999999531 15653 23577888888765
Q ss_pred cC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCCC
Q 022982 228 LG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 228 l~-~eklifEAP~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G~ 276 (289)
.+ +--+-+++++..+...+++..++++.+.... +-.-+++++.|.-|-
T Consensus 156 ~p~v~giK~~~~~~~~~~~~~~~~~~~~~v~~G~-~~~~~~~~~~G~~G~ 204 (292)
T d1xkya1 156 IENIVAIKDAGGDVLTMTEIIEKTADDFAVYSGD-DGLTLPAMAVGAKGI 204 (292)
T ss_dssp STTEEEEEECSSCHHHHHHHHHHSCTTCEEEESS-GGGHHHHHHTTCCEE
T ss_pred CCCEEEEeccccchhhhheeeeecCCCCEEEECC-ccccchHHHcCCCcc
Confidence 44 4455567888888888889999988876433 344577777665553
|
| >d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: KguE-like domain: Hypothetical protein PA2260 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.43 E-value=0.051 Score=45.37 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
...++++.++++||+.|||.... .-++++..++-+.+++.|+++..-....+.. .+.+ ..
T Consensus 20 ~~~~~l~~~a~~G~dgIEi~~~~-~~~~~~~~~l~~~~~~~GL~i~~~~~~~~~~------~~~~-------------~~ 79 (250)
T d1yx1a1 20 GQASFLPLLAMAGAQRVELREEL-FAGPPDTEALTAAIQLQGLECVFSSPLELWR------EDGQ-------------LN 79 (250)
T ss_dssp CGGGGHHHHHHHTCSEEEEEGGG-CSSCCCHHHHHHHHHHTTCEEEEEEEEEEEC------TTSS-------------BC
T ss_pred CHHHHHHHHHHhCCCEEEEeccc-CCCcchHHHHHHHHHHcCCEEEEeccccccc------Cchh-------------hH
Confidence 46678999999999999997433 3345566788889999999875432221110 0000 01
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC------CchhHHHH---HHHhCC
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT------NPRTSEWF---IRRYGP 252 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP------~k~qQ~~~---I~~fG~ 252 (289)
.+....++.++ +.||..|.+-+-.. .... +-..+.+.++..|+ +|.+|.= ...+-..+ +..-.|
T Consensus 80 ~~~~~~i~~A~---~LG~~~v~~~~g~~-~~~~--~l~~l~~~a~~~Gv-~l~iE~h~~~~~~~~~~~~~~~~~~~~~~p 152 (250)
T d1yx1a1 80 PELEPTLRRAE---ACGAGWLKVSLGLL-PEQP--DLAALGRRLARHGL-QLLVENDQTPQGGRIEVLERFFRLAERQQL 152 (250)
T ss_dssp TTHHHHHHHHH---HTTCSEEEEEEECC-CSSC--CHHHHHHHHTTSSC-EEEEECCSSHHHHCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH---HhCCCEEEEeeccc-chhH--HHHHHHHHHHHcCC-EEEEEeCCCcccCCHHHHHHHHHHhhccCC
Confidence 23556666665 67999999977432 2222 34557778888887 7899962 22222233 333346
Q ss_pred CcccccCCCCch
Q 022982 253 KVNLFVDHSQVM 264 (289)
Q Consensus 253 ~VNLgI~~~eVl 264 (289)
+|.+..|+.+..
T Consensus 153 ~vg~~~D~~h~~ 164 (250)
T d1yx1a1 153 DLAMTFDIGNWR 164 (250)
T ss_dssp SEEEEEETTGGG
T ss_pred ccccccchHHHH
Confidence 665556665543
|
| >d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Putative cytoplasmic protein STM4435 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.19 E-value=0.095 Score=43.76 Aligned_cols=137 Identities=13% Similarity=0.191 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc--CC-hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLE--IP-EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~--i~-~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 178 (289)
.+++.++.|+++||+.||+...... ++ .....++-+.+++.|+++.. ++.-.+... -++
T Consensus 19 ~lee~l~~a~~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~~gl~i~~-l~~~~~~~~----~~~------------- 80 (271)
T d2q02a1 19 SIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVT-INAVYPFNQ----LTE------------- 80 (271)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEE-EEEETTTTS----CCH-------------
T ss_pred CHHHHHHHHHHhCCCEEEEecCcccccccccCCHHHHHHHHHHcCCcEEE-eecccccCC----CCH-------------
Confidence 6899999999999999999754332 22 22234555667888998754 332111111 000
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCc--cHHHH---HHHHhccCCCceEEec--------CCchhHHH
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSL--RADII---AKVIGRLGLEKTMFEA--------TNPRTSEW 245 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~--r~d~v---~~ii~~l~~eklifEA--------P~k~qQ~~ 245 (289)
+ ..+++.+.++.+-+.|+..|++-..+ ....-.+ -.+.+ .++++..|+ ++..|. ....+...
T Consensus 81 ~---~~~~~~~~i~~a~~lG~~~v~~~~~~-~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lE~~~~~~~~~~~~~~~~~ 155 (271)
T d2q02a1 81 E---VVKKTEGLLRDAQGVGARALVLCPLN-DGTIVPPEVTVEAIKRLSDLFARYDI-QGLVEPLGFRVSSLRSAVWAQQ 155 (271)
T ss_dssp H---HHHHHHHHHHHHHHHTCSEEEECCCC-SSBCCCHHHHHHHHHHHHHHHHTTTC-EEEECCCCSTTCSCCCHHHHHH
T ss_pred H---HHHHHHHHHHHHHHcCCcEEEEecCC-CCccchHHHHHHHHHHHHHHhccCCe-EEEEeecCCcCcccCCHHHHHH
Confidence 0 13333444444456799999885431 1111011 12222 334444553 456664 24556778
Q ss_pred HHHHhCCCcccccCCC
Q 022982 246 FIRRYGPKVNLFVDHS 261 (289)
Q Consensus 246 ~I~~fG~~VNLgI~~~ 261 (289)
+|+..++++.+..|+.
T Consensus 156 li~~~~~~~g~~~D~~ 171 (271)
T d2q02a1 156 LIREAGSPFKVLLDTF 171 (271)
T ss_dssp HHHHHTCCCEEEEEHH
T ss_pred HHHHhCCccceeccch
Confidence 9999998875544433
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=94.31 E-value=0.018 Score=49.03 Aligned_cols=46 Identities=11% Similarity=-0.073 Sum_probs=32.1
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST 88 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~ 88 (289)
.+..+.++++..++|||++|+|+--..=+..+ .|+-.++++..++-
T Consensus 14 ~~~~al~i~~~~~~~i~~iKvG~~l~~~~G~~----~i~~l~~~~~~Ifl 59 (237)
T d1dbta_ 14 SAEETLAFLAPFQQEPLFVKVGMELFYQEGPS----IVKQLKERNCELFL 59 (237)
T ss_dssp SHHHHHHHTGGGTTSCCEEEECHHHHHHHTHH----HHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHcCCcccEEEECHHHHhhcCHH----HHHHHHhcchheeh
Confidence 46678888899999999999996443333333 45555677866553
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=94.12 E-value=0.091 Score=44.89 Aligned_cols=153 Identities=12% Similarity=0.129 Sum_probs=109.6
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (289)
....+.......+|.++.... ....+.+..-++.++.+|..+. ....++..+ .++.+.+..+.+.+.|.+.|-
T Consensus 105 ~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~~~i~ 179 (303)
T d1rqba2 105 VDRFVDKSAENGMDVFRVFDA---MNDPRNMAHAMAAVKKAGKHAQGTICYTISPVH--TVEGYVKLAGQLLDMGADSIA 179 (303)
T ss_dssp HHHHHHHHHHTTCCEEEECCT---TCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTC--CHHHHHHHHHHHHHTTCSEEE
T ss_pred hHHHHHHHHHhhhhHHhhhhh---HHHHHHHHHHHHHHHHcCCeEEEEEEecCCCCC--CHHHHHHHHHHHHhcCCcEEe
Confidence 344555666778999987654 3444578889999999997543 222222111 334677888899999999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc
Q 022982 120 LNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (289)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG 198 (289)
+.|-+-.+.+++-.++|+.++++ +-. -+++..+ .. | ...-+..+-..++||
T Consensus 180 l~DT~G~~~P~~v~~li~~l~~~~~~~--i~i~~H~-Hn------d-------------------~Gla~AN~laA~~aG 231 (303)
T d1rqba2 180 LKDMAALLKPQPAYDIIKAIKDTYGQK--TQINLHC-HS------T-------------------TGVTEVSLMKAIEAG 231 (303)
T ss_dssp EEETTCCCCHHHHHHHHHHHHHHHCTT--CCEEEEE-BC------T-------------------TSCHHHHHHHHHHTT
T ss_pred ecCccchhhhHHHHHHHHHHHhhcCCc--ccceecc-Cc------h-------------------HHHHHHHHHHHHHcC
Confidence 99999999999999999999885 222 2344432 11 1 222366777899999
Q ss_pred CcEEEEecc--ccccCCCCccHHHHHHHHhccC
Q 022982 199 ADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 199 A~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
|++ |++- |+=...||..++.+-..+.++|
T Consensus 232 ~~~--id~ti~GlG~~~GN~~te~lv~~L~~~g 262 (303)
T d1rqba2 232 VDV--VDTAISSMSLGPGHNPTESVAEMLEGTG 262 (303)
T ss_dssp CSE--EEEBCGGGCSTTSBCBHHHHHHHTTTSS
T ss_pred CCE--EEECCccCCCCCCCccHHHHHHHHHhcC
Confidence 996 6886 8888889999998877777666
|
| >d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.72 E-value=0.44 Score=40.65 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=50.0
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccC-hhHHHHHHHHHHhCCceecC----Cc---HHHHHHH-------------
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMP-KPFIEEVVKRAHQHDVYVST----GD---WAEHLIR------------- 97 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p-~~~l~eKI~l~~~~gV~v~~----Gt---lfE~a~~------------- 97 (289)
......++++.-++||+++|+|.=-..-+. +..++....+++.+|..+.. +. =.+.++.
T Consensus 40 ~~~eal~li~~l~~~v~~~Kig~~lf~~~G~~~~~~~~~~~~~~~~~~IflDlK~~DIpnTv~~a~~a~~~~~~~~~d~v 119 (267)
T d1dqwa_ 40 TTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADIT 119 (267)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECGGGCSSCCTTTTHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHSTTTCHHHHCSEE
T ss_pred CHHHHHHHHHHhCCcceEEEECHHHHhhcChHHHHHHHHHHHhccCceEecCccccCCcHHHHHHHHHHHHHhhcCCcEE
Confidence 678899999999999999999952222222 23444455666777776642 21 1111111
Q ss_pred -----hCCchHHHHHHHHHHcCCCE
Q 022982 98 -----NGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 98 -----qg~~~~~~yl~~~k~lGF~~ 117 (289)
-|++.++.+.+.+++.+...
T Consensus 120 Tvh~~~G~~~l~~~~~~~~~~~~~~ 144 (267)
T d1dqwa_ 120 NAHGVVGPGIVSGLKQAAEEVTKEP 144 (267)
T ss_dssp EEESTTCTHHHHHHHHHHHHHCSSC
T ss_pred EecCcCCHHHHHHHHHHhhccCCcc
Confidence 15567888999888876554
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.44 E-value=0.63 Score=40.14 Aligned_cols=111 Identities=23% Similarity=0.255 Sum_probs=86.0
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
+.+++..|-|+|=+-...+ +.++..++++.+++.||.|+-|++-
T Consensus 118 I~ea~~~GADaiLLI~~~L--~~~~l~~l~~~a~~lgl~~LvEvh~---------------------------------- 161 (247)
T d1a53a_ 118 IDDAYNLGADTVLLIVKIL--TERELESLLEYARSYGMEPLIEIND---------------------------------- 161 (247)
T ss_dssp HHHHHHHTCSEEEEEGGGS--CHHHHHHHHHHHHTTTCCCEEEECS----------------------------------
T ss_pred HHHHHHhhcchhhhhhhhc--cHHHHHHHHHHHHHHhhhHHhhcCC----------------------------------
Confidence 6788999999999887766 7888999999999999999998875
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecC-CchhHHHHHHHhCCCccc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT-NPRTSEWFIRRYGPKVNL 256 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ekl-ifEAP-~k~qQ~~~I~~fG~~VNL 256 (289)
-+.+++.+++||+.|.|-.|.+. +-++..+...+++..+|.+.+ |-|.= .-..+...+++.|.|-=|
T Consensus 162 -~~El~~a~~~~a~iIGINnRnL~--t~~vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davL 230 (247)
T d1a53a_ 162 -ENDLDIALRIGARFIGINSRDLE--TLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFL 230 (247)
T ss_dssp -HHHHHHHHHTTCSEEEEESBCTT--TCCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEE
T ss_pred -HHHHHHHHhCCCCeEeeeccChh--hhhhhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 25567788999999999999884 345566778888888986544 45554 333456667777766444
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.16 E-value=0.29 Score=41.90 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
+.++++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. +...+-+-.+ ++
T Consensus 28 ~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~---~~~~~~vi~g---~~----------------- 84 (296)
T d1xxxa1 28 ATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEA---VGDRARVIAG---AG----------------- 84 (296)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHH---HTTTSEEEEE---CC-----------------
T ss_pred HHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHH---hccccceEec---cc-----------------
Confidence 36888999999999999976322 3469999999999998773 1111111000 00
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
..+.++.++.++..-++||+.||+=.-
T Consensus 85 ---~~s~~~~i~~a~~a~~~Gad~v~i~~P 111 (296)
T d1xxxa1 85 ---TYDTAHSIRLAKACAAEGAHGLLVVTP 111 (296)
T ss_dssp ---CSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred ---cchhHHHHHHHHHHHHhcCCeEEEEec
Confidence 114788999999999999999999663
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=93.00 E-value=0.17 Score=46.57 Aligned_cols=127 Identities=17% Similarity=0.284 Sum_probs=89.6
Q ss_pred cccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc----
Q 022982 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL---- 125 (289)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti---- 125 (289)
+.-|+-+=||+||-.+++++.|++.++.++++-- +.+. .|..+.-+|.. =+++++.++++||+.|.+.-=+.
T Consensus 99 ~~~v~~i~~GGGTPt~L~~~~l~~ll~~l~~~~~-~~~~--~e~t~E~~P~~~~~~~l~~l~~~G~nRiSlGvQs~~~~v 175 (441)
T d1olta_ 99 GRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQ-FNAD--AEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEV 175 (441)
T ss_dssp TCCEEEEEEEESCGGGSCHHHHHHHHHHHHHHSC-EEEE--EEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHH
T ss_pred CCccceeEecCCCcCCCCHHHHHHHHHHHhhhcc-ccch--hcccccccccccchHHHHHHHHhCCceEEecchhcchhh
Confidence 4558899999999999999999999999987632 1111 13333333322 35788999999999976643222
Q ss_pred ------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc
Q 022982 126 ------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (289)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG 198 (289)
.-+.++-.++|+.+++.||. |-..+-. +. |. +|.+.+.+.++.-++.+
T Consensus 176 l~~i~R~~~~~~~~~~~~~~r~~g~~~vn~DLI~--Gl----------------Pg-------qT~~~~~~tl~~~~~l~ 230 (441)
T d1olta_ 176 QRLVNREQDEEFIFALLNHAREIGFTSTNIDLIY--GL----------------PK-------QTPESFAFTLKRVAELN 230 (441)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEE--SC----------------TT-------CCHHHHHHHHHHHHHHC
T ss_pred hhhhhcCCCHHHHHHHHHHHHhcccceeeccccc--cc----------------CC-------cchHHHHHHHHHHHhhC
Confidence 23566778899999999997 4433322 21 11 25888899999999999
Q ss_pred CcEEEEe
Q 022982 199 ADMIMID 205 (289)
Q Consensus 199 A~~ViiE 205 (289)
.+.|-+=
T Consensus 231 pd~is~y 237 (441)
T d1olta_ 231 PDRLSVF 237 (441)
T ss_dssp CSEEEEE
T ss_pred CCccccc
Confidence 9999663
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=92.99 E-value=0.62 Score=39.60 Aligned_cols=80 Identities=10% Similarity=0.111 Sum_probs=56.8
Q ss_pred chHHHHHHHH-HHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 101 SAFKEYVEDC-KQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 101 ~~~~~yl~~~-k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
+.++++++++ .+.|++.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+ +
T Consensus 24 ~~l~~~i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv-------~--------------- 81 (293)
T d1f74a_ 24 KGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQV-------G--------------- 81 (293)
T ss_dssp HHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC-------C---------------
T ss_pred HHHHHHHHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCcccccccc-------c---------------
Confidence 3688888886 56699998775322 489999999999988773 1111111122 0
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
..++.+.++.++..-++||+.|++=.-
T Consensus 82 -----~~s~~~~iela~~a~~~Gad~i~~~pP 108 (293)
T d1f74a_ 82 -----SVNLKEAVELGKYATELGYDCLSAVTP 108 (293)
T ss_dssp -----CSCHHHHHHHHHHHHHHTCSEEECCCC
T ss_pred -----cccHHHHHHHHHHHHHcCCCEeeccCc
Confidence 014788899999999999999999664
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=92.42 E-value=1.2 Score=37.66 Aligned_cols=145 Identities=17% Similarity=0.069 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
.+.++++++.+.|.+.|=+.-. +..|+.++|.++++.+.+. +-++.-=+|+ +
T Consensus 24 ~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv-------~----------------- 79 (295)
T d1hl2a_ 24 SLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHV-------G----------------- 79 (295)
T ss_dssp HHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC-------C-----------------
T ss_pred HHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeecc-------c-----------------
Confidence 6788888888999999888643 3479999999999988774 1111111222 0
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc--------------------------ccccC----CCCccHHHHHHHHhc
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD--------------------------DVCKH----ADSLRADIIAKVIGR 227 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--------------------------GI~d~----~G~~r~d~v~~ii~~ 227 (289)
..+.++.++.++..-++||+.|++=.. -+|+. .-.+..+++.++.+
T Consensus 80 ---~~s~~~~i~~a~~a~~~Gad~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~~- 155 (295)
T d1hl2a_ 80 ---CVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLVT- 155 (295)
T ss_dssp ---CSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHHT-
T ss_pred ---cchhhHHHHHHHHHHhcCCceeeeeeccccCCChHHHHHHHHHHhcccCcCccccccccccccccccccccccccc-
Confidence 114788899999999999999999763 13442 23578889999875
Q ss_pred cC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCCC
Q 022982 228 LG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 228 l~-~eklifEAP~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G~ 276 (289)
.+ +--+=.++++..+... +++.++++.+.-.. +-.-+++++.|--|-
T Consensus 156 ~pnvvgiK~~~~~~~~~~~-~~~~~~~~~v~~g~-~~~~~~~~~~G~~G~ 203 (295)
T d1hl2a_ 156 LPGVGALKQTSGDLYQMEQ-IRREHPDLVLYNGY-DEIFASGLLAGADGG 203 (295)
T ss_dssp STTEEEEEECCCCHHHHHH-HHHHCTTCEEEECC-GGGHHHHHHHTCCEE
T ss_pred CcchhhhccccccHHHHHH-HhhcCCCceEeccc-HHHHhhhhccCCCce
Confidence 44 5555577777665544 45667777765333 334578888775553
|
| >d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Endonuclease IV domain: Endonuclease IV species: Escherichia coli [TaxId: 562]
Probab=92.28 E-value=0.4 Score=39.56 Aligned_cols=146 Identities=10% Similarity=0.089 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCC-CCCCCccccccccccccC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~-~evg~~~d~~~~~~~~~~ 174 (289)
.+.+-++.++++||++|||-.+. -++++++..++-+.+++.|+++.+= -.-.+. .... ..|+.
T Consensus 13 ~l~~a~~~a~e~G~~~ieif~~~P~~w~~~~~~~~~~~~~k~~~~~~gl~~~~~-~~~~p~~~n~~-~~~~~-------- 82 (285)
T d1qtwa_ 13 GLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQI-LPHDSYLINLG-HPVTE-------- 82 (285)
T ss_dssp CHHHHHHHHHHTTCSEEECCSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCGGGB-CCBCCTTCCTT-CSSHH--------
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCccee-EecCCcccccc-cchHH--------
Confidence 56667777899999999995432 3577888888888999999875552 111110 0111 11110
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHH-------HHhccCCCceEEecCC--------
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAK-------VIGRLGLEKTMFEATN-------- 239 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~-------ii~~l~~eklifEAP~-------- 239 (289)
....+.+.+.+.+..+-+.||..|++-.-...... -+.+..+. +...-.--.+..|...
T Consensus 83 ----~r~~s~~~~~~~i~~a~~lG~~~vv~h~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~i~le~~~~~~~~~~~ 156 (285)
T d1qtwa_ 83 ----ALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQI--SEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGF 156 (285)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTS--CHHHHHHHHHHHHHHHHHHCSSCEEEEECCCCCTTBCCS
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCceeeeceeccCcc--cHHHHHHHHHHHHHHHHHhccCCeEEEeeccccCCcCcC
Confidence 00112344444455555679999999874222211 12222222 2221112235555432
Q ss_pred -chhHHHHHHHhCCCcccc--cCCCCc
Q 022982 240 -PRTSEWFIRRYGPKVNLF--VDHSQV 263 (289)
Q Consensus 240 -k~qQ~~~I~~fG~~VNLg--I~~~eV 263 (289)
..+-..+++..+..-|++ +|+.++
T Consensus 157 ~~~~~~~i~~~~~~~~~vgl~lD~~H~ 183 (285)
T d1qtwa_ 157 KFEHLAAIIDGVEDKSRVGVCIDTCHA 183 (285)
T ss_dssp SHHHHHHHHHHCSCGGGEEEEEEHHHH
T ss_pred CHHHHHHHHHHhcccccceEecccchH
Confidence 234567777777554554 565554
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=92.10 E-value=0.62 Score=39.39 Aligned_cols=148 Identities=8% Similarity=0.026 Sum_probs=90.4
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.+.++++++-+-|.+.|=+--.| ..|+.++|.++++.+.+.. =++.-=+|+ +
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv-------~---------------- 78 (295)
T d1o5ka_ 22 ESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGA-------G---------------- 78 (295)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEEC-------C----------------
T ss_pred HHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeec-------c----------------
Confidence 468888999889999998774333 4799999999999988841 111111222 0
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccCC----CCccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~~----G~~r~d~v~~ii~~ 227 (289)
..+.++.++.++..-++||+.|++=.- -+|+.- -.+..+.+.++++.
T Consensus 79 ----~~st~~ai~~a~~A~~~Gad~v~v~pP~y~~~s~~~i~~~~~~ia~a~~~pi~iYn~P~~~g~~~~~~~~~~l~~~ 154 (295)
T d1o5ka_ 79 ----TNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAAD 154 (295)
T ss_dssp ----CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhccCCCeeEEeccchhcccchhHHHHHHHhh
Confidence 114788899999999999999999653 145432 34556666666665
Q ss_pred cC-CCceEEecCCchhHHHHHHHh---CCCcccccCCCCchhhhhhhcccCCC
Q 022982 228 LG-LEKTMFEATNPRTSEWFIRRY---GPKVNLFVDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 228 l~-~eklifEAP~k~qQ~~~I~~f---G~~VNLgI~~~eVl~LE~LR~g~~G~ 276 (289)
.+ +-=+-...++..+....+... ++++.+ ....+..-++.++.|--|-
T Consensus 155 ~~ni~~iK~~~~~~~~~~~~~~~~~~~~~~~~v-~~g~~~~~~~~~~~Ga~G~ 206 (295)
T d1o5ka_ 155 LKNVVGIKEANPDIDQIDRTVSLTKQARSDFMV-WSGNDDRTFYLLCAGGDGV 206 (295)
T ss_dssp CTTEEEEEECCCCHHHHHHHHHHHHHHCTTCEE-EESSGGGHHHHHHHTCCEE
T ss_pred cccccceecCCcchhhhhhHHHHhhhcCCccee-ccccccchhhhhhcCCCcc
Confidence 55 322333444444444444322 333332 2334445556666555443
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.17 E-value=0.73 Score=37.71 Aligned_cols=155 Identities=10% Similarity=0.052 Sum_probs=90.8
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~Gt-lfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
......++++..++|||++|+|..-..=+..+.++ ++.++++.++..-. +..+ |+-...|.+.+.++|+|.
T Consensus 13 ~~~~a~~l~~~~~~~v~~iKig~~l~~~~G~~~v~---~l~~~~~~~i~~D~K~~DI-----g~t~~~~~~~~~~~gad~ 84 (212)
T d1km4a_ 13 NRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIA---EFRKRFGCRIIADFAVADI-----PETNEKICRATFKAGADA 84 (212)
T ss_dssp SHHHHHHHHHHHTTTCSEEEEEHHHHHHHCTHHHH---HHHHHHCCEEEEEEEECSC-----HHHHHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHHhCCCCcEEEECHHHHHhcCHHHHH---HHHHhcccceehhhhhhcc-----ccHHHHhHhhhccccccE
Confidence 46678889999999999999985433333334444 35566776655321 2221 123456667777899999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHc
Q 022982 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (289)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeA 197 (289)
+-|+- ..+.+....+++.+++.|..+.- +.. .+. .+.. . . ......+..+-..++
T Consensus 85 ~TVh~---~~g~~~i~~~~~~a~~~~~~~~~-l~~---~s~----~~~~---------~----~-~~~~~~~~~~~~~~~ 139 (212)
T d1km4a_ 85 IIVHG---FPGADSVRACLNVAEEMGREVFL-LTE---MSH----PGAE---------M----F-IQGAADEIARMGVDL 139 (212)
T ss_dssp EEEES---TTCHHHHHHHHHHHHHHTCEEEE-ECS---CSS----GGGG---------T----T-HHHHHHHHHHHHHHH
T ss_pred EEEec---cCChHHHHHHHHHHHhcCCcccc-chh---hcc----hhhh---------h----h-hhhHHHHHHHHHHHh
Confidence 99984 45566777778877877655332 111 111 0000 0 0 012233444555677
Q ss_pred cCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEE
Q 022982 198 GADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 235 (289)
Q Consensus 198 GA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklif 235 (289)
|.+-++. +.+..+.+..+-+..+.+.+++
T Consensus 140 g~~g~v~---------~~~~~~~i~~ir~~~~~~~~~v 168 (212)
T d1km4a_ 140 GVKNYVG---------PSTRPERLSRLREIIGQDSFLI 168 (212)
T ss_dssp TCCEEEC---------CTTCHHHHHHHHHHHCSSSEEE
T ss_pred CCccccc---------cccCHHHHhhhhhccCCceeEE
Confidence 8775542 4566777777666666666655
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=90.97 E-value=1.3 Score=39.11 Aligned_cols=147 Identities=14% Similarity=0.171 Sum_probs=92.0
Q ss_pred EEecCccccccChhHHHHHHHHHHhCCceecC----CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 022982 57 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 132 (289)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~----GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r 132 (289)
+-++-|+.-.++.....-...++++++|+|+. |.-+ +.+..|-+.||+.|=+..-..++.+-.+
T Consensus 46 iq~s~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~------------e~i~~ai~~GftSVMiDgS~l~~eeNi~ 113 (305)
T d1rvga_ 46 LALSEGAMKYGGRALTLMAVELAKEARVPVAVHLDHGSSY------------ESVLRALRAGFTSVMIDKSHEDFETNVR 113 (305)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEEECSH------------HHHHHHHHTTCSEEEECCTTSCHHHHHH
T ss_pred EECCccHHhHccHHHHHHHHHHHhccCCcEEEeehhccCh------------hhhHHHHhcCCceEEEcCccccHHHHHH
Confidence 33443443344445555666677777777664 3223 3455667899999999776665544322
Q ss_pred --HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec---c
Q 022982 133 --LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---D 207 (289)
Q Consensus 133 --~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa---r 207 (289)
.++++.+...|.-|--|+|.=- . .+|.. ......+..+ ||++..+.++ +-|.|.+=+== -
T Consensus 114 ~Tk~vv~~Ah~~gv~VEaElG~ig-g-----~Ed~~-----~~~~~~~~~T-~peea~~Fv~---~TgvD~LAvaiGn~H 178 (305)
T d1rvga_ 114 ETRRVVEAAHAVGVTVEAELGRLA-G-----IEEHV-----AVDEKDALLT-NPEEARIFME---RTGADYLAVAIGTSH 178 (305)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCC-C-----SCC-----------CCTTCC-CHHHHHHHHH---HHCCSEEEECSSCCS
T ss_pred HHHHHHHHhchhceeEEeeeeeee-c-----ccccc-----cccccccccC-CHHHHHHHHH---HhCccHhhhhhhhhh
Confidence 4688889999999999999832 1 11110 0000111112 6888777776 46999765533 2
Q ss_pred ccccCCCC--ccHHHHHHHHhccCC
Q 022982 208 DVCKHADS--LRADIIAKVIGRLGL 230 (289)
Q Consensus 208 GI~d~~G~--~r~d~v~~ii~~l~~ 230 (289)
|.|...++ ++-+.+++|-+.++.
T Consensus 179 G~Yk~~~~~~l~~~~l~~I~~~~~~ 203 (305)
T d1rvga_ 179 GAYKGKGRPFIDHARLERIARLVPA 203 (305)
T ss_dssp SSBCSSSSCCCCHHHHHHHHHHCCS
T ss_pred cccCCCCcccchHHHHHHHHhccCC
Confidence 89988766 999999999877765
|
| >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein IolI species: Bacillus subtilis [TaxId: 1423]
Probab=90.05 E-value=0.69 Score=38.18 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=31.0
Q ss_pred EecCccccccChhHHHHHHHHHHhCCc---eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 58 KFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 58 Kfg~GTs~l~p~~~l~eKI~l~~~~gV---~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
|+|.-+..+++...|++.+++++++|. .+.+....-..... ..+++..+.+++.|+..+-++
T Consensus 2 k~~~~~~~~~~~~~l~~~l~~a~~~Gf~~IEl~~~~~~~~~~~~--~~~~~l~~~l~~~gl~i~~~~ 66 (278)
T d1i60a_ 2 KLCFNEATTLENSNLKLDLELCEKHGYDYIEIRTMDKLPEYLKD--HSLDDLAEYFQTHHIKPLALN 66 (278)
T ss_dssp EEEEEGGGGTTTCCHHHHHHHHHHTTCSEEEEETTTHHHHHTTS--SCHHHHHHHHHTSSCEEEEEE
T ss_pred EEEEeHHHhCCCCCHHHHHHHHHHHCcCEEEeCCccccccccCc--ccHHHHHHHHHHcCCcEEEEe
Confidence 566555555555556666666666653 33333322222222 245566666666666555443
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=89.54 E-value=0.48 Score=37.31 Aligned_cols=95 Identities=9% Similarity=-0.101 Sum_probs=57.7
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
....+-++++..++|||++|+|+=-..=+..+.+++..+.+. +..+. ...-..+ .-..+.+.+.+.|.|.|
T Consensus 12 ~~~~~~~~~~~~~~~vdiikig~~~~~~~G~~~i~~l~~~~~--~~~i~-----~d~k~~d--~~~~~~~~~~~~gad~v 82 (213)
T d1q6oa_ 12 TMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYP--HKIVL-----ADAKIAD--AGKILSRMCFEANADWV 82 (213)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHHHHCT--TSEEE-----EEEEECS--CHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHhcCCCccEEEeCeeccccCCHHHHHHHHHhcc--cccce-----eEEeecc--chHHHHHHHHHcCCCEE
Confidence 567888889999999999999864333333444444433322 22221 1111112 22334456678899999
Q ss_pred EecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 119 ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
-+. .....+.-..+++.+++.|.+
T Consensus 83 tvh---~~~g~~~~~~~~~~~~~~~~~ 106 (213)
T d1q6oa_ 83 TVI---CCADINTAKGALDVAKEFNGD 106 (213)
T ss_dssp EEE---TTSCHHHHHHHHHHHHHTTCE
T ss_pred EEe---ccCCchHHHHHHHHHHHcCCc
Confidence 886 234566667788888887665
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=89.48 E-value=0.51 Score=41.26 Aligned_cols=105 Identities=15% Similarity=0.126 Sum_probs=74.2
Q ss_pred chhHHHHHHHhhcccccEEEecCccc---------------cccChhHHHHHHHHH---H-hCCceecCCcHHHHHHHhC
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSH---------------SLMPKPFIEEVVKRA---H-QHDVYVSTGDWAEHLIRNG 99 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs---------------~l~p~~~l~eKI~l~---~-~~gV~v~~GtlfE~a~~qg 99 (289)
....+.++++...+.+|++=+|+=.| +|-.--.+++-++++ | .+++++..=|++...+..|
T Consensus 28 ~~~~~~~~l~~l~~gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G 107 (271)
T d1ujpa_ 28 SREGFLQAVEEVLPYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWG 107 (271)
T ss_dssp CHHHHHHHHHHHGGGCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHC
T ss_pred CHHHHHHHHHHHHcCCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCCcEEEEeechhhhhCC
Confidence 45667778877767899999998655 222111222222222 2 3455444447888888886
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (289)
+++|++.|++.|++.+=|=| +|.++..++...++++|+...+=+
T Consensus 108 ---~~~F~~~~~~aGvdGliipD----LP~ee~~~~~~~~~~~gl~~I~lv 151 (271)
T d1ujpa_ 108 ---PERFFGLFKQAGATGVILPD----LPPDEDPGLVRLAQEIGLETVFLL 151 (271)
T ss_dssp ---HHHHHHHHHHHTCCEEECTT----CCGGGCHHHHHHHHHHTCEEECEE
T ss_pred ---chhHhHHHhhcCceeEeccc----hhhhhHHHHHHHhhccccceeecc
Confidence 89999999999999998755 888888889999999998866543
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=88.20 E-value=0.33 Score=42.35 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc------------------------CC-----hhHHHHHHHHHHHcCCcccceeee
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLE------------------------IP-----EETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~------------------------i~-----~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
+.+=+.++|+|||++|+||-=+-. ++ .++..+||+.+.++|++|+-.+-.
T Consensus 23 i~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt~~df~~Lv~~~H~~Gi~VilD~V~ 101 (393)
T d1e43a2 23 LQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVL 101 (393)
T ss_dssp HHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEeCcCccCCCCCCCCCCcccCcccccccccCccCCCCCCHHHHHHHHHHHHHcCCEEEEEEee
Confidence 333389999999999999643311 22 688999999999999999887743
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=87.91 E-value=3.5 Score=34.45 Aligned_cols=122 Identities=18% Similarity=0.247 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.....+....+.+++.+-+.+..-.+ +.....++.+++.|..+..-+.. .. ++ .
T Consensus 104 ~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~--~~-------~~---------------~ 157 (303)
T d1rqba2 104 VVDRFVDKSAENGMDVFRVFDAMNDP--RNMAHAMAAVKKAGKHAQGTICY--TI-------SP---------------V 157 (303)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTCCT--HHHHHHHHHHHHTTCEEEEEEEC--CC-------ST---------------T
T ss_pred hhHHHHHHHHHhhhhHHhhhhhHHHH--HHHHHHHHHHHHcCCeEEEEEEe--cC-------CC---------------C
Confidence 35556667788899998877655443 44456888889988775432222 10 00 1
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCcccccCCC
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLFVDHS 261 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~qQ~~~I~~fG~~VNLgI~~~ 261 (289)
.+++.+++.+++.+++||+.| .|+|..|...+..+.++++ ++.++|+|++-|++-.+
T Consensus 158 ~~~~~~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~li~------------------~l~~~~~~~i~i~~H~H 214 (303)
T d1rqba2 158 HTVEGYVKLAGQLLDMGADSI-----ALKDMAALLKPQPAYDIIK------------------AIKDTYGQKTQINLHCH 214 (303)
T ss_dssp CCHHHHHHHHHHHHHTTCSEE-----EEEETTCCCCHHHHHHHHH------------------HHHHHHCTTCCEEEEEB
T ss_pred CCHHHHHHHHHHHHhcCCcEE-----eecCccchhhhHHHHHHHH------------------HHHhhcCCcccceeccC
Confidence 148889999999999999876 4789999999999998886 56788999998885433
Q ss_pred Cch------hhhhhhcc
Q 022982 262 QVM------DLECLRGR 272 (289)
Q Consensus 262 eVl------~LE~LR~g 272 (289)
+=. +|.+++.|
T Consensus 215 nd~Gla~AN~laA~~aG 231 (303)
T d1rqba2 215 STTGVTEVSLMKAIEAG 231 (303)
T ss_dssp CTTSCHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHcC
Confidence 321 35666644
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.80 E-value=3.9 Score=34.79 Aligned_cols=141 Identities=11% Similarity=0.167 Sum_probs=87.8
Q ss_pred chhHHHHHHHhhcccccEEEecCccc---------------ccc---ChhHHHHHHHHHHhC-CceecCCcHHHHHHHhC
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSH---------------SLM---PKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNG 99 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs---------------~l~---p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg 99 (289)
..+.+.+++......+|++=+|.=.| +|- .-+.+-+.++-.+++ ++++..=|++...+..|
T Consensus 17 ~~~~s~~~l~~l~~g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G 96 (248)
T d1geqa_ 17 DKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAG 96 (248)
T ss_dssp CHHHHHHHHHHHGGGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHC
T ss_pred CHHHHHHHHHHHHcCCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEeccccccccC
Confidence 45677778887777899999987433 111 111222233333443 34544557888888885
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 179 (289)
+++|++.|++.|++.+=|=| +|.|+-..+.+.++++|+...+=+.. .
T Consensus 97 ---~~~f~~~~~~~Gv~GliipD----LP~eE~~~~~~~~~~~gl~~I~lvaP---------------------t----- 143 (248)
T d1geqa_ 97 ---VRNFLAEAKASGVDGILVVD----LPVFHAKEFTEIAREEGIKTVFLAAP---------------------N----- 143 (248)
T ss_dssp ---HHHHHHHHHHHTCCEEEETT----CCGGGHHHHHHHHHHHTCEEEEEECT---------------------T-----
T ss_pred ---HHHHhhhhcccCeeEEeccC----CcHHHHHHHHhhccccCcceEEEecc---------------------c-----
Confidence 99999999999999998754 78888889999999998886553322 1
Q ss_pred ccccHHHHHHHHHHHHHccCcEEEEecc-ccccCCCCccH
Q 022982 180 YVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRA 218 (289)
Q Consensus 180 ~~~~~~~~I~~~~~dLeAGA~~ViiEar-GI~d~~G~~r~ 218 (289)
+++++++.+. +...-+|-.=++ |++.....+-.
T Consensus 144 ---t~~~ri~~i~---~~s~gFiY~vs~~GvTG~~~~~~~ 177 (248)
T d1geqa_ 144 ---TPDERLKVID---DMTTGFVYLVSLYGTTGAREEIPK 177 (248)
T ss_dssp ---CCHHHHHHHH---HHCSSEEEEECCC-------CCCH
T ss_pred ---chhHHHHHHH---hcCCCeEEEEecccccccchhhhh
Confidence 2444555444 455556655565 77776655443
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=87.48 E-value=0.54 Score=39.66 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCc----------c------------cC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 022982 103 FKEYVEDCKQVGFDTIELNVGS----------L------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 153 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt----------i------------~i-----~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (289)
+.+=+.++|+|||++|.|+==+ - .+ +.++..+||+.+.++|++|+-.+-.-
T Consensus 39 i~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~~dy~vd~~~Gt~~df~~LV~~aH~~GI~VIlD~V~N 116 (357)
T d1gcya2 39 LRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPN 116 (357)
T ss_dssp HHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHHcCCCEEEeCcCeeCCccCCCCCCCCCCCCcChhhcccCccCCCHHHHHHHHHHHHhcCCeEEEEEecc
Confidence 3334788999999999998210 0 11 24888999999999999999888653
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=86.98 E-value=1.8 Score=36.24 Aligned_cols=90 Identities=14% Similarity=0.331 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 022982 72 IEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (289)
Q Consensus 72 l~eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (289)
.++.++..++++| ++..+. +++...+..+.+-+-|+.+|||.-- .+...+.|+.++++ .|++
T Consensus 4 ~~~~~~~l~~~~iipvlr~~--------~~~~~~~~~~al~~~Gi~~iEitl~-----~~~a~~~I~~l~~~----~p~~ 66 (212)
T d1vhca_ 4 TQQIIEKLRELKIVPVIALD--------NADDILPLADTLAKNGLSVAEITFR-----SEAAADAIRLLRAN----RPDF 66 (212)
T ss_dssp HHHHHHHHHHHCEEEEECCS--------SGGGHHHHHHHHHHTTCCEEEEETT-----STTHHHHHHHHHHH----CTTC
T ss_pred HHHHHHHHHHCCEEEEEeCC--------CHHHHHHHHHHHHHCCCCEEEEeCC-----ChhHHHHHHHHHhc----CCCc
Confidence 3566777788888 444453 2335667778888999999999754 46667899988764 2333
Q ss_pred eeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 151 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 151 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
-+ +. |..++ .+++++.++|||++++-=+
T Consensus 67 ~v--Ga-----------GTV~~---------------~~~~~~a~~aGa~FivSP~ 94 (212)
T d1vhca_ 67 LI--AA-----------GTVLT---------------AEQVVLAKSSGADFVVTPG 94 (212)
T ss_dssp EE--EE-----------ESCCS---------------HHHHHHHHHHTCSEEECSS
T ss_pred eE--ee-----------eeccc---------------HHHHHHHHhhCCcEEECCC
Confidence 22 11 12222 5788999999999998655
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=86.95 E-value=0.37 Score=41.30 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc------------cCC---------hhHHHHHHHHHHHcCCcccceeee
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSL------------EIP---------EETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti------------~i~---------~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
.++-.++++++||++|+||==+- ..+ .++..++|+.+.++|++|+-.+-.
T Consensus 17 ~~~~~dyl~~lG~tai~l~P~~~~~~~~~~y~gY~~~dy~vd~~~Gt~~dfk~LV~~aH~~GI~VilDvV~ 87 (354)
T d1g94a2 17 AQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLI 87 (354)
T ss_dssp HHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEeCcCccCCCCCCCcccCCCCcceeCCCCCCHHHHHHHHHHHhccCceeEEEeec
Confidence 34555678999999999974322 222 789999999999999999988755
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Probab=86.85 E-value=3.7 Score=34.42 Aligned_cols=171 Identities=17% Similarity=0.176 Sum_probs=107.3
Q ss_pred CCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccC----hhHHHHHHHHHHhCCceecC--C-cHH-
Q 022982 21 PRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP----KPFIEEVVKRAHQHDVYVST--G-DWA- 92 (289)
Q Consensus 21 PR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p----~~~l~eKI~l~~~~gV~v~~--G-tlf- 92 (289)
-|..|++-++-+|. .+...+..++.+..| +.+..+.|.+.-+- .+.+...-.++.+..|.--+ | .+.
T Consensus 28 a~~~gV~~ii~~~~----~~~~~~~~~~la~~~-~~i~~a~GiHP~~~~~~~~~~~~~l~~~~~~~~vvaIGEiGLD~~~ 102 (260)
T d1j6oa_ 28 FEENNIEFVVNVGV----NLEDSKKSLDLSKTS-DRIFCSVGVHPHDAKEVPEDFIEHLEKFAKDEKVVAIGETGLDFFR 102 (260)
T ss_dssp TTTTTEEEEEEECS----SHHHHHHHHHHHTTC-TTEEEEECCCGGGGGGCCTTHHHHHHHHTTSTTEEEEEEEEEETTT
T ss_pred HHHCCCCEEEEecC----CHHHHHHHHHHHHhc-cccccccccChhhcccccchhhhhhHHHHhhCCeeeEeeccccccc
Confidence 37789999999998 666899999998887 66778888776542 23454444444444442211 3 221
Q ss_pred --H-HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 022982 93 --E-HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (289)
Q Consensus 93 --E-~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 169 (289)
+ ...++. .|.+.++.|++++-..|==+-+ ...++++.+++.+..... ++-...+ |
T Consensus 103 ~~~~~~~Q~~--vF~~ql~lA~~~~lPviiH~r~-------a~~~~~~il~~~~~~~~~--~i~H~fs--G--------- 160 (260)
T d1j6oa_ 103 NISPAEVQKR--VFVEQIELAGKLNLPLVVHIRD-------AYSEAYEILRTESLPEKR--GVIHAFS--S--------- 160 (260)
T ss_dssp CSSCHHHHHH--HHHHHHHHHHHHTCCEEEEEES-------CHHHHHHHHHHSCCCSSC--EEETTCC--S---------
T ss_pred cccHHHHHHH--HHHHHHHHHHhcCcceEEeecc-------chHHHHHHHHhhcCCCCC--eeeeccc--c---------
Confidence 1 223443 7999999999999987744433 234677777776554211 2211111 1
Q ss_pred ccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch
Q 022982 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 241 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~ 241 (289)
. .+.+++.|+.|.+.=+- +. ++ ..+...+.+++..+|+++|+.|...|-
T Consensus 161 -----------~------~~~~~~~l~~g~~is~~-g~-~~----~~~~~~~~~~v~~iPldrlllETD~P~ 209 (260)
T d1j6oa_ 161 -----------D------YEWAKKFIDLGFLLGIG-GP-VT----YPKNEALREVVKRVGLEYIVLETDCPF 209 (260)
T ss_dssp -----------C------HHHHHHHHHHTEEEEEC-GG-GG----CTTCHHHHHHHHHHCGGGEEECCCBTS
T ss_pred -----------C------HHHHHHHHhCCCceeec-cc-cc----cchHHHHHHHHHhcccceEEEecCCCC
Confidence 1 47788888888766442 11 22 223345777889999999999987553
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=86.84 E-value=2.4 Score=36.43 Aligned_cols=105 Identities=15% Similarity=0.232 Sum_probs=72.9
Q ss_pred chhHHHHHHHhh-cccccEEEecCccc-cccChhHHHHH-----------------HHHHHhC--CceecCCcHHHHHHH
Q 022982 39 SHNVLEDIFESM-GQFVDGLKFSGGSH-SLMPKPFIEEV-----------------VKRAHQH--DVYVSTGDWAEHLIR 97 (289)
Q Consensus 39 g~~~~~DlLe~a-g~yID~lKfg~GTs-~l~p~~~l~eK-----------------I~l~~~~--gV~v~~GtlfE~a~~ 97 (289)
.+..+.++++.+ -.-+|++=+|+=.| .+.+-..+++- ++-.++. .+++..=|+.-..+.
T Consensus 29 ~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~ 108 (267)
T d1qopa_ 29 GIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFN 108 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEeeccchhh
Confidence 566778888775 44599999997544 23333333332 2222332 355555566777766
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 022982 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (289)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (289)
.| +++|++.|++.|++.+-|=| +|.++-..+.+.++++|+...+=+
T Consensus 109 ~G---~~~f~~~~~~~Gv~GliipD----lP~ee~~~~~~~~~~~~l~~I~lv 154 (267)
T d1qopa_ 109 NG---IDAFYARCEQVGVDSVLVAD----VPVEESAPFRQAALRHNIAPIFIC 154 (267)
T ss_dssp TC---HHHHHHHHHHHTCCEEEETT----CCGGGCHHHHHHHHHTTCEEECEE
T ss_pred cC---chHHHHHHHhcCCCceeccc----hhhhhhHHHHHhhhccCceEEEEe
Confidence 64 89999999999999999977 888888889999999888765533
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=86.80 E-value=2.1 Score=36.93 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=79.6
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
+++| +.+++.+|=|+|=+-...+ ++++..++++.+++.||.|+-|++-
T Consensus 118 id~~QI~ear~~GADavLLI~~~L--~~~~l~~l~~~a~~lgl~~LVEvh~----------------------------- 166 (254)
T d1piia2 118 IDPYQIYLARYYQADACLLMLSVL--DDDQYRQLAAVAHSLEMGVLTEVSN----------------------------- 166 (254)
T ss_dssp CSHHHHHHHHHTTCSEEEEETTTC--CHHHHHHHHHHHHHTTCEEEEEECS-----------------------------
T ss_pred CcHHHHHHHHhhccchhhhhHhhh--cccHHHHHHHHHHHHhhhHHHhhcc-----------------------------
Confidence 3444 6789999999999988776 6788899999999999999999876
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHH
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRR 249 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ekl-ifEAP~k-~qQ~~~I~~ 249 (289)
-+.+++.+++||..|-|-.|.+-. =++.-+.-.+++..+|-+.+ +-|.=-+ ..+..+++.
T Consensus 167 ------~~El~~a~~~~a~iIGINnRnL~t--f~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~ 228 (254)
T d1piia2 167 ------EEEQERAIALGAKVVGINNRDLRD--LSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSH 228 (254)
T ss_dssp ------HHHHHHHHHTTCSEEEEESEETTT--TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTT
T ss_pred ------HHHHHHHHhhcccccCccccchhh--hhhhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHHHHc
Confidence 356778889999999999997632 22334555667777876654 4465432 345555544
|
| >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein IolI species: Bacillus subtilis [TaxId: 1423]
Probab=86.75 E-value=0.63 Score=38.41 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHcCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~G~~v~ 147 (289)
.+++-++.|++.||+.||+..... ..+..+...+-+.++++|+++.
T Consensus 15 ~l~~~l~~a~~~Gf~~IEl~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 63 (278)
T d1i60a_ 15 NLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPL 63 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEE
T ss_pred CHHHHHHHHHHHCcCEEEeCCccccccccCcccHHHHHHHHHHcCCcEE
Confidence 355555555555555555544321 1122223344455555555544
|
| >d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein Lmo2234 species: Listeria monocytogenes [TaxId: 1639]
Probab=86.46 E-value=0.6 Score=38.40 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHcCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~G~~v~ 147 (289)
.+++-++.++++||+.||+...-. .-+..+..++-+.+++.|+++.
T Consensus 16 ~lee~l~~aa~~Gfd~iEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 64 (275)
T d2g0wa1 16 SFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVT 64 (275)
T ss_dssp CHHHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHhCCCEEEEccccccccccCcCCHHHHHHHHHHcCCceE
Confidence 688888888888888888752111 0122334567777888888753
|
| >d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.23 E-value=8.9 Score=32.56 Aligned_cols=162 Identities=12% Similarity=0.173 Sum_probs=99.5
Q ss_pred hHHHHHHHhhccccc-------EEEecCccccccChh---HHHHHHHHHHhCCceec---CCc-HHHHHHHh-CC-----
Q 022982 41 NVLEDIFESMGQFVD-------GLKFSGGSHSLMPKP---FIEEVVKRAHQHDVYVS---TGD-WAEHLIRN-GP----- 100 (289)
Q Consensus 41 ~~~~DlLe~ag~yID-------~lKfg~GTs~l~p~~---~l~eKI~l~~~~gV~v~---~Gt-lfE~a~~q-g~----- 100 (289)
..+..+|..|.+||- .+|+|+- ++.+++ .+-+-|.++|+.|+.+. .|+ -+...+.+ +.
T Consensus 8 ~~~~~~l~~a~PYi~~~r~ktiVIKlGG~--~l~~~~~~~~~~~dIa~L~~~G~~vViVhGgg~~i~~~l~~~gi~~~~~ 85 (300)
T d2bufa1 8 AQVAKVLSEALPYIRRFVGKTLVIKYGGN--AMESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFI 85 (300)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEECCT--TTTSSHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCCBS
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEChH--HhCChhHHHHHHHHHHHHHHcCCcEEEecChHHHHHHHHHhcccCceec
Confidence 467889999999998 5888863 444443 45667889999998444 334 33322211 10
Q ss_pred -------------------ch-HHHHHHHHHHcCCCEEEecCCccc----------------------------CChhHH
Q 022982 101 -------------------SA-FKEYVEDCKQVGFDTIELNVGSLE----------------------------IPEETL 132 (289)
Q Consensus 101 -------------------~~-~~~yl~~~k~lGF~~IEISdGti~----------------------------i~~~~r 132 (289)
.. =.+..+.+.+.|..++-+|..... -...-.
T Consensus 86 ~g~RvT~~~~l~~~~~~~~g~vn~~lv~~l~~~g~~a~~l~~~d~~~i~~~~~~~~~~~~~~~~~~~id~g~~G~v~~v~ 165 (300)
T d2bufa1 86 DGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVN 165 (300)
T ss_dssp SSSBCBCHHHHHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEEC
T ss_pred CCcccccchhHHHHHHHHHhHHHHHHHHHHHhcCCcccccCCCccceEEeecccccccCcccccccccccCcccceeecc
Confidence 01 235567778889999887643211 011123
Q ss_pred HHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEE--ecccc
Q 022982 133 LRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI--DSDDV 209 (289)
Q Consensus 133 ~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii--EarGI 209 (289)
.++|+.+-+.|+. |.+.++.-. .++. + ..|.+++...+...| +|+++|+ +-.|+
T Consensus 166 ~~~i~~ll~~g~Ipvis~~~~~~-------~G~~-~-------------nin~D~~Aa~lA~~L--~AdkLI~Ltdv~Gv 222 (300)
T d2bufa1 166 VGLLNMLVKGDFIPVIAPIGVGS-------NGES-Y-------------NINADLVAGKVAEAL--KAEKLMLLTNIAGL 222 (300)
T ss_dssp HHHHHHHHHTTCEEEEEEEEECT-------TSCE-E-------------ECCHHHHHHHHHHHH--TCSEEEEEESSSCC
T ss_pred hhHHHHHhcCCCeEEecccccCc-------ccch-h-------------cccHHHHHHHHHHHc--CCCeEEEEcCCCcc
Confidence 4678888888887 778888721 1111 1 125677776666655 5565555 44599
Q ss_pred ccCCCC----ccHHHHHHHHhc
Q 022982 210 CKHADS----LRADIIAKVIGR 227 (289)
Q Consensus 210 ~d~~G~----~r~d~v~~ii~~ 227 (289)
|+++|. +..+.++++++.
T Consensus 223 ~~~~g~~~~~l~~~~~~~li~~ 244 (300)
T d2bufa1 223 MDKQGQVLTGLSTEQVNELIAD 244 (300)
T ss_dssp BCTTSCBCCEECHHHHHHHHHT
T ss_pred ccCCCcchhhccHHHHHHHHHc
Confidence 998876 567788888753
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=85.82 E-value=0.49 Score=40.90 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------------------------C-----ChhHHHHHHHHHHHcCCcccceeee
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLE------------------------I-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------------------------i-----~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
.+.+=|.++++|||++|.||==+-. + +.++..+||+.|.++|++|+-.+-.
T Consensus 22 ~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt~~df~~Lv~~aH~~GIkVilDvV~ 101 (394)
T d2d3na2 22 RLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVM 101 (394)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEECcCccCCCCCCCCCCcccCcccccccccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 5777788999999999998643211 2 2578999999999999999877643
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=85.72 E-value=0.39 Score=39.96 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCc-------------ccCC------hhHHHHHHHHHHHcCCcccceeee
Q 022982 103 FKEYVEDCKQVGFDTIELNVGS-------------LEIP------EETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt-------------i~i~------~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
+.+-|.++++|||++|++|==+ ..++ .++..++|+.+.++|++|+-.+-.
T Consensus 23 i~~kLdyl~~lGv~~i~L~Pi~~~~~~~gY~~~d~~~id~~~~G~~~~f~~lv~~~H~~gi~VilD~V~ 91 (347)
T d1ht6a2 23 MMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVI 91 (347)
T ss_dssp HHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHhHHHHHHcCCCEEEECCCCcCCCCCCCCccCcCcCCcccCCCHHHHHHHHHHHhhcceEEeeeccc
Confidence 3344677799999999997422 2222 277899999999999999988844
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=85.49 E-value=8.2 Score=33.32 Aligned_cols=164 Identities=11% Similarity=0.114 Sum_probs=102.1
Q ss_pred chhHHHHHHHhhc---ccccEEEecCccccccChhHHHH-HHHHHHhCCceecC----CcHHHHHHHhCCchHHHHHHHH
Q 022982 39 SHNVLEDIFESMG---QFVDGLKFSGGSHSLMPKPFIEE-VVKRAHQHDVYVST----GDWAEHLIRNGPSAFKEYVEDC 110 (289)
Q Consensus 39 g~~~~~DlLe~ag---~yID~lKfg~GTs~l~p~~~l~e-KI~l~~~~gV~v~~----GtlfE~a~~qg~~~~~~yl~~~ 110 (289)
+...++.+++.|- .=| ++-++-|+.--++-+.+.. -..++++++|+|+. |.-+| .+..|
T Consensus 26 ~~e~~~avi~AAe~~~sPv-Ilq~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e------------~i~~a 92 (284)
T d1gvfa_ 26 NAETIQAILEVCSEMRSPV-ILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLD------------DIRRK 92 (284)
T ss_dssp SHHHHHHHHHHHHHHTCCC-EEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEEEEEECCHH------------HHHHH
T ss_pred CHHHHHHHHHHHHHHCCCE-EEEcCHhHHhhCCHHHHHHHHHHHHHhcCCeEEeeeccccchH------------HHHHH
Confidence 3445555555432 122 5667766666566544443 44566888888875 33333 45667
Q ss_pred HHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 111 KQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
-+.||+.|=+..-.+++.+-. =.++++.++..|.-|--|+|.=-+. +-+...+. . . ....||++..
T Consensus 93 i~~GftSVMiD~S~lp~eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~-ed~~~~~~------~----~-~~~T~peea~ 160 (284)
T d1gvfa_ 93 VHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGV-EDDMSVDA------E----S-AFLTDPQEAK 160 (284)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC----------------------C-CSSCCHHHHH
T ss_pred HhcCCCeEEEECCCCCHHHHHHHHHHHHHHHHhhccceeeeeeeeccc-cccccccc------c----c-cccCCHHHHH
Confidence 899999999865555433322 2356777788899999999983211 11100010 0 0 0122788888
Q ss_pred HHHHHHHHccCcEEEEecc---ccccCCCCccHHHHHHHHhccCC
Q 022982 189 RRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar---GI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
+.++ +-|+|.+=+=-- |+|...-+++-+.+.+|-+.++.
T Consensus 161 ~Fv~---~TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~~v 202 (284)
T d1gvfa_ 161 RFVE---LTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDV 202 (284)
T ss_dssp HHHH---HHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCS
T ss_pred HHHH---HhCCCEEeeecCceeeccCCCCccccchhhhhhccccC
Confidence 8887 469887655432 89999889999999999988874
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=84.66 E-value=2.8 Score=35.21 Aligned_cols=147 Identities=10% Similarity=0.031 Sum_probs=98.5
Q ss_pred chHHHHHHHHHHcCCCEEEecC--C-cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNV--G-SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISd--G-ti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.+.++++++.+-|.+.|=+.- | +..|+.++|.++++.+.+. +=++..=+|+ +
T Consensus 22 ~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~-------~---------------- 78 (292)
T d2a6na1 22 ASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGT-------G---------------- 78 (292)
T ss_dssp HHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-------C----------------
T ss_pred HHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeec-------c----------------
Confidence 3678889999999999988853 2 3469999999999988884 1111111111 0
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccCC----CCccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~~----G~~r~d~v~~ii~~ 227 (289)
..+..+.++.++..-++||+.+++=.- -||+.- -.+..+.+.++.+
T Consensus 79 ----~~s~~~~i~~~~~a~~~Gad~~~~~pP~~~~~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~e~~~~L~~- 153 (292)
T d2a6na1 79 ----ANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPETVGRLAK- 153 (292)
T ss_dssp ----CSSHHHHHHHHHTTTTSSCCEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCHHHHHHHHT-
T ss_pred ----cchHHHHHHHhccHHhcCCcceeccCCCCCCCCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCHHHHHHHhc-
Confidence 114788899999999999999988542 156542 2467788877754
Q ss_pred cC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCCC
Q 022982 228 LG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 228 l~-~eklifEAP~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G~ 276 (289)
++ +-=+-...++..+...+++..++++.++...+ -.-++.++.|-.|-
T Consensus 154 ~pnv~giK~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~G~~G~ 202 (292)
T d2a6na1 154 VKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDD-ASALDFMQLGGHGV 202 (292)
T ss_dssp STTEEEEEECSCCTTHHHHHHTTSCTTSEEEECCG-GGHHHHHHTTCCEE
T ss_pred CCCEEEEEeccCcchhhhhhhhhcCCccEEeecch-hhhhhHhhCCceEE
Confidence 54 33344566778888888888888777664433 34466776665443
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=84.66 E-value=1.2 Score=38.65 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=77.5
Q ss_pred HHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHHHHH
Q 022982 74 EVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYVRLV 139 (289)
Q Consensus 74 eKI~l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI~~~ 139 (289)
.-=++++..++++.- + ||-.. +..+.+-++...+.|.-.|-|=|... -+|.++.++-|+.+
T Consensus 68 ~~~~i~~a~~~Pvi~D~d~GyG~~-----~~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa 142 (289)
T d1muma_ 68 DIRRITDVCSLPLLVDADIGFGSS-----AFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAA 142 (289)
T ss_dssp HHHHHHHHCCSCEEEECTTCSSSS-----HHHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHH
T ss_pred HHHHHhcccCCCeeeccccccccc-----chHHHHHHHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHHHH
Confidence 333556667887764 2 33221 11455667777899999999988532 47889999999888
Q ss_pred HHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHH
Q 022982 140 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRAD 219 (289)
Q Consensus 140 ~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d 219 (289)
.+. +--|+|-+ .. .-|. ......++.|++++...+||||.|.+|+- -..+
T Consensus 143 ~~a--~~~~d~~I---iA----RTDa-------------~~~~g~~eAi~R~~aY~eAGAD~vf~~~~--------~~~~ 192 (289)
T d1muma_ 143 VDA--KTDPDFVI---MA----RTDA-------------LAVEGLDAAIERAQAYVEAGAEMLFPEAI--------TELA 192 (289)
T ss_dssp HHT--CSSTTSEE---EE----EECC-------------HHHHCHHHHHHHHHHHHHTTCSEEEETTC--------CCHH
T ss_pred HHh--cCCcchhh---ee----cccc-------------ccccCHHHHHHHHHHhhhcCCcEEEecCC--------CCHH
Confidence 773 11122222 00 1111 11224789999999999999999999874 1246
Q ss_pred HHHHHHhccC
Q 022982 220 IIAKVIGRLG 229 (289)
Q Consensus 220 ~v~~ii~~l~ 229 (289)
.+.++.+.++
T Consensus 193 ~~~~~~~~~~ 202 (289)
T d1muma_ 193 MYRQFADAVQ 202 (289)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 6777777665
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=84.53 E-value=3.3 Score=35.49 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=74.5
Q ss_pred ccChhHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------------cCCh
Q 022982 66 LMPKPFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPE 129 (289)
Q Consensus 66 l~p~~~l~eKI~l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~ 129 (289)
+.-.+.+..-=++++.-+++|.- + ||-+. ..+.+-++...+.|.-.|=|-|... .++.
T Consensus 59 lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~------~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~ 132 (275)
T d1s2wa_ 59 ASWTQVVEVLEFMSDASDVPILLDADTGYGNF------NNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADI 132 (275)
T ss_dssp --CHHHHHHHHHHHHTCSSCEEEECCSSCSSH------HHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCH
T ss_pred cchhhHHHHHHhhhcccCCceeEecccccccc------hHHHHHHHHHHHhccceeEeeccccccccccccccccccccH
Confidence 44455556666678888888874 1 34322 2455667778889999999999642 5778
Q ss_pred hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 130 ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 130 ~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
++...-|+.+++.-. -|+|-+- . .-|. . +. ....++.|+++++..+||||.|.+|+.
T Consensus 133 ~~~~~ki~aa~~~~~--~~~~~i~---A----RtDa----~-----~~---~~gl~eai~R~~aY~eAGAD~vf~~~~ 189 (275)
T d1s2wa_ 133 EEFALKIKACKDSQT--DPDFCIV---A----RVEA----F-----IA---GWGLDEALKRAEAYRNAGADAILMHSK 189 (275)
T ss_dssp HHHHHHHHHHHHHCS--STTCEEE---E----EECT----T-----TT---TCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHhhhhhcc--CcceeEE---e----cchh----h-----hh---cCCHHHHHHHHHHHHhcCCCeeeeccc
Confidence 888888887776411 1233221 0 1111 0 11 114789999999999999999999985
|
| >d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Hypothetical protein YgbM (EC1530) domain: Hypothetical protein YgbM (EC1530) species: Escherichia coli [TaxId: 562]
Probab=84.27 E-value=0.3 Score=39.09 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
.+++.++.++++||++||+.+- -+.+. .++-+.+++.|+++..
T Consensus 16 pl~e~i~~a~~~Gf~gIEl~~~-~~~~~---~~~~~~l~~~gl~~~~ 58 (260)
T d1k77a_ 16 PFIERFAAARKAGFDAVEFLFP-YNYST---LQIQKQLEQNHLTLAL 58 (260)
T ss_dssp CGGGHHHHHHHHTCSEEECSCC-TTSCH---HHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHhCCCEEEECCC-CCCCH---HHHHHHHHHCCCcEEE
Confidence 5888899999999999999743 23333 3566778899998643
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.23 E-value=2.1 Score=36.14 Aligned_cols=76 Identities=20% Similarity=0.052 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHcCCCEEEecC---CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNV---GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISd---Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
+.+.++++++-+-|.+.|=+-. -+..|+.++|.++++.+.+.--.+.+ |+ +
T Consensus 20 ~~~~~~i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~~~~~i~--gv-------~----------------- 73 (293)
T d1w3ia_ 20 EKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNKIIF--QV-------G----------------- 73 (293)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSCEEE--EC-------C-----------------
T ss_pred HHHHHHHHHHHHcCCCEEEECeechhhhhCCHHHHHHHHHHHHhhcccccc--cc-------c-----------------
Confidence 3678889999899999988744 34589999999999988875222211 22 1
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEe
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiE 205 (289)
..+.++.++.++..-++||+.+++=
T Consensus 74 ---~~st~~~i~~a~~a~~~Ga~~~~~~ 98 (293)
T d1w3ia_ 74 ---GLNLDDAIRLAKLSKDFDIVGIASY 98 (293)
T ss_dssp ---CSCHHHHHHHHHHGGGSCCSEEEEE
T ss_pred ---cchhhhhhhhhhhhhhhcccccccc
Confidence 0136778999999999999999863
|
| >d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: A4 beta-galactosidase species: Thermus thermophilus [TaxId: 274]
Probab=84.15 E-value=0.34 Score=39.60 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCC----------cccCChhHHHHHHHHHHHcCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVG----------SLEIPEETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG----------ti~i~~~~r~~lI~~~~~~G~~v~ 147 (289)
..++-++.+|++||++|-+|.. ..++ +..-++|+.++++|++|.
T Consensus 15 ~~~~D~~~~~~~G~n~vR~~i~~W~~iep~~G~~~~--~~~d~~i~~~~~~Gi~~i 68 (393)
T d1kwga2 15 RWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEW--GWLDEAIATLAAEGLKVV 68 (393)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTCHHHHCSBTTBCCC--HHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHcCCCEEEecccchhhcCCCCCccCH--HHHHHHHHHHHHCCCEEE
Confidence 5677788899999999988752 2222 344578999999999876
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Probab=84.06 E-value=4.9 Score=33.33 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=99.2
Q ss_pred CCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCcccccc----ChhHHHHHHHHHHhCCceecC-C--cH--H
Q 022982 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM----PKPFIEEVVKRAHQHDVYVST-G--DW--A 92 (289)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~----p~~~l~eKI~l~~~~gV~v~~-G--tl--f 92 (289)
+..|++-++-++. .+...+..++.+..| +.+..++|.+.-. +...+.....+...+.-.+.. | |+ +
T Consensus 29 ~~~gV~~~v~~~t----~~~~~~~~~~l~~~~-~~i~~~~GiHP~~~~~~~~~~~~~~~~~~~~~~~~~v~iGEiGld~~ 103 (259)
T d1zzma1 29 AQAGVGKIIVPAT----EAENFARVLALAENY-QPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLF 103 (259)
T ss_dssp HHTTEEEEEEECC----SGGGHHHHHHHHHHC-TTEEEEECCCGGGGGGCCHHHHHHHHHHHHHCCSSEEEEEEEEEECC
T ss_pred HHcCCCEEEEecC----CHHHHHHHHHHHhcC-ccccccccCCchHhhccchhhHHHHHHHHhccCcccceecccccccc
Confidence 4568988888888 555888888888777 5577888877642 334445555555555432221 2 21 1
Q ss_pred ----HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022982 93 ----EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (289)
Q Consensus 93 ----E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 168 (289)
+..-++- .|++.++.|++++...+==+-+.- + ++++..++.+... -++-...+ |
T Consensus 104 ~~~~~~~~q~~--~f~~ql~lA~~~~~Pv~IH~r~a~----~---~~~~~l~~~~~~~---~~i~H~f~--g-------- 161 (259)
T d1zzma1 104 GDDPQFERQQW--LLDEQLKLAKRYDLPVILHSRRTH----D---KLAMHLKRHDLPR---TGVVHGFS--G-------- 161 (259)
T ss_dssp SSCCCHHHHHH--HHHHHHHHHHHTTCCEEEEEESCH----H---HHHHHHHHHCCTT---CEEETTCC--S--------
T ss_pred ccchhhhHHHH--HHHHHHHHHHHhccchhhhhHHHH----H---HHHHhhhcccccc---ceeeeccc--C--------
Confidence 1222333 789999999999988654332221 2 3444455543322 12322111 1
Q ss_pred cccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCc
Q 022982 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k 240 (289)
. .+.+++.++.|.+.=+ =+.-.+.+..+ +.++++.+|++||++|...|
T Consensus 162 ------------~------~~~~~~~l~~g~~~si-~~~~~~~~~~~-----~~~~v~~iPldriL~ETD~P 209 (259)
T d1zzma1 162 ------------S------LQQAERFVQLGYKIGV-GGTITYPRASK-----TRDVIAKLPLASLLLETDAP 209 (259)
T ss_dssp ------------C------HHHHHHHHHTTCEEEE-CGGGGCTTTCS-----HHHHHHHSCGGGEEECCCBT
T ss_pred ------------C------HHHHHHHHHcCCCccc-cccccccchHH-----HHHHHHhhccceEEEecCCC
Confidence 1 4677788888874433 23223333443 55788999999999997654
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.98 E-value=1.2 Score=37.92 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=69.6
Q ss_pred CCceeEecCCCCCCCc----hhHHHHHHHhhcccccEE-EecCccccccChhHHHHHHHHHHhCCc--eecCCcHHHHHH
Q 022982 24 FGVTEMRSPHYTLSSS----HNVLEDIFESMGQFVDGL-KFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLI 96 (289)
Q Consensus 24 ~GlT~V~DkGl~~~~g----~~~~~DlLe~ag~yID~l-Kfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~GtlfE~a~ 96 (289)
..+.-|++.-++-. . ..+.+..++.-++=||++ -+|.+-...+ +.+++-++.+|.+|. +|-.= .++
T Consensus 72 v~v~tVigFP~G~~-~~~~k~~E~~~Ai~~GAdEID~Vin~~~~~~~~~--~ev~~~~~~~~~~g~~lKVIlE----t~~ 144 (234)
T d1n7ka_ 72 VKLCSVIGFPLGQA-PLEVKLVEAQTVLEAGATELDVVPHLSLGPEAVY--REVSGIVKLAKSYGAVVKVILE----APL 144 (234)
T ss_dssp CCEEEEESTTTCCS-CHHHHHHHHHHHHHHTCCEEEECCCGGGCHHHHH--HHHHHHHHHHHHTTCEEEEECC----GGG
T ss_pred CceEEEEecCCCCC-cHHHHHHHHHHHHHcCCCeEEEEechhhhhhhhH--HHHHHHHHHHhccCceEEEEEe----ccc
Confidence 34555665444222 1 456788888889999986 2333334444 368888999999985 44432 222
Q ss_pred HhCCchHHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHHc
Q 022982 97 RNGPSAFKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKSA 142 (289)
Q Consensus 97 ~qg~~~~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~~ 142 (289)
. .++.+..-.+.|.+.|-|.|--|.|+..- .+++-..+.+..+..
T Consensus 145 L-~~~~i~~a~~~a~~aGadFVKTSTG~~~~gat~~~~~~l~~~~~~~ 191 (234)
T d1n7ka_ 145 W-DDKTLSLLVDSSRRAGADIVKTSTGVYTKGGDPVTVFRLASLAKPL 191 (234)
T ss_dssp S-CHHHHHHHHHHHHHTTCSEEESCCSSSCCCCSHHHHHHHHHHHGGG
T ss_pred c-chHHHHHHHHHHHHhhhhheeecccccCCCCCHHHHHHHHHHhcCC
Confidence 2 12366777788999999999999998643 334444455555443
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Probab=83.98 E-value=4.2 Score=33.90 Aligned_cols=169 Identities=14% Similarity=0.167 Sum_probs=106.9
Q ss_pred CCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCcccccc--ChhHHHHHHHHHHhCCceecC--C-cH---HH
Q 022982 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM--PKPFIEEVVKRAHQHDVYVST--G-DW---AE 93 (289)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~--p~~~l~eKI~l~~~~gV~v~~--G-tl---fE 93 (289)
+..|++-++..|. .+...+..++.+..| +.+.++.|-+... ....+++.-+++.+..|..-+ | .+ .+
T Consensus 30 ~~~gv~~ii~~~~----~~~~~~~~~~l~~~~-~~i~~~~GiHP~~~~~~~~~e~l~~~~~~~~vvaIGEiGLD~~~~~~ 104 (265)
T d1yixa1 30 AARDVKFCLAVAT----TLPSYLHMRDLVGER-DNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYTPE 104 (265)
T ss_dssp HHTTEEEEEECCS----SHHHHHHHHHHHCSC-TTEEEEECCCTTCCSSCCCHHHHHHHHTSTTEEEEEEEEEECTTCSS
T ss_pred HHcCCCEEEEeeC----CHHHHHHHHHHHHhc-ccccccccccccccccccchHHHHHHhccCCceeeeccccccccccc
Confidence 3569998888888 677899999998888 5577888877533 233466666777777664332 3 22 12
Q ss_pred -HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCCcccccccccc
Q 022982 94 -HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 94 -~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~~evg~~~d~~~~~~~ 171 (289)
...+|. .|.+.++.+++++-..+==+-+. .+ ++++.+++.... .. ++-...+ |
T Consensus 105 ~~~~q~~--~f~~ql~lA~~~~lPv~iH~r~a----~~---~~~~il~~~~~~---~~~~v~H~Fs--G----------- 159 (265)
T d1yixa1 105 TKVRQQE--SFIHHIQIGRELNKPVIVHTRDA----RA---DTLAILREEKVT---DCGGVLHCFT--E----------- 159 (265)
T ss_dssp CHHHHHH--HHHHHHHHHHHHTCCEEEEEESC----HH---HHHHHHHHTTGG---GTCEEETTCC--S-----------
T ss_pred chHHHHH--HHHHHHHHHHHhCCCcccchhhH----HH---HHHHHHHhhccc---CcceEEEeec--C-----------
Confidence 334554 79999999999999887555443 23 344445543222 11 2322111 1
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 241 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~ 241 (289)
. .+++++.++.|.+.=+- +.=.+.+ ...+.++++.+|++||+.|...|-
T Consensus 160 ---------~------~~~a~~~l~~g~~~s~~-g~~~~~~-----~~~l~~~v~~iPldrlLlETD~P~ 208 (265)
T d1yixa1 160 ---------D------RETAGKLLDLGFYISFS-GIVTFRN-----AEQLRDAARYVPLDRLLVETDSPY 208 (265)
T ss_dssp ---------C------HHHHHHHHTTTCEEEEC-GGGGSTT-----CHHHHHHHHHSCGGGEEECCCBTS
T ss_pred ---------C------hHHHHHHHHcCCeecCc-cccccch-----hHHHHHHHHhcchhceEeecCCcc
Confidence 1 47888899998755443 2112222 245778889999999999987553
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=83.93 E-value=0.66 Score=39.99 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-------------------------cCC-----hhHHHHHHHHHHHcCCcccceee
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL-------------------------EIP-----EETLLRYVRLVKSAGLKAKPKFA 151 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-------------------------~i~-----~~~r~~lI~~~~~~G~~v~~E~g 151 (289)
.+.+=|+++|+||+++|.+|==+- .+. .++..+||+.|.++|++|+--+-
T Consensus 29 gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd~~~Gt~~d~~~LV~~aH~~GikVIlD~V 108 (361)
T d1mxga2 29 HIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVV 108 (361)
T ss_dssp HHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEeCcCeeCCCCCCCCCCCcccccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCEEEEEee
Confidence 467777899999999999884321 111 57899999999999999986664
Q ss_pred e
Q 022982 152 V 152 (289)
Q Consensus 152 ~ 152 (289)
.
T Consensus 109 ~ 109 (361)
T d1mxga2 109 I 109 (361)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.23 E-value=0.79 Score=39.60 Aligned_cols=51 Identities=10% Similarity=0.205 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------------------------cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL------------------------EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------------------------~i-----~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
.+.+=|.++|+|||++|.||==+- .+ +.++..++|+.|.++|++|+-.+-.
T Consensus 25 ~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt~~df~~LV~~aH~~GIkVIlDvV~ 104 (393)
T d1hvxa2 25 KVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVF 104 (393)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCccCccccccccccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 355557888999999999874321 12 2478999999999999999887754
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.76 E-value=0.36 Score=42.05 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCEEEecC----------------Ccc----cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 022982 104 KEYVEDCKQVGFDTIELNV----------------GSL----EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISd----------------Gti----~i-----~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
++-.+++++|||++|+||= |.- .+ +.++..+||+.|.++|++|+--+-.
T Consensus 26 ~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY~v~~~~Gt~~dfk~Lv~~aH~~GI~VIlDvV~ 99 (403)
T d1hx0a2 26 LECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVI 99 (403)
T ss_dssp HHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHhCCCEEEeCcCccCccCCCCCCCCceeecCCCCccCCCCCCHHHHHHHHHHHHhcCCEEEEEEec
Confidence 3444568999999999993 221 12 2468999999999999999877733
|
| >d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]
Probab=82.61 E-value=1.4 Score=36.78 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEe------cCCcccCChhHHHHHHHHHHHcCCcccceeeeec
Q 022982 104 KEYVEDCKQVGFDTIEL------NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEI------SdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~ 154 (289)
++.++..|+.||++|-| .+|.-.+. .-.+++++|+++||+|+-.++--.
T Consensus 30 ~~~~~~lk~~G~n~VRi~vW~~p~~g~~~~~--~~~~~v~~a~~~gl~vil~~h~~~ 84 (332)
T d1hjsa_ 30 QPLENILAANGVNTVRQRVWVNPADGNYNLD--YNIAIAKRAKAAGLGVYIDFHYSD 84 (332)
T ss_dssp CCHHHHHHHTTCCEEEEEECSSCTTCTTSHH--HHHHHHHHHHHTTCEEEEEECCSS
T ss_pred ccHHHHHHHcCCCEEEeeeeecCCCCccCHH--HHHHHHHHHHHCCCEEEEEecCCc
Confidence 45778889999999999 67776544 445799999999999998887633
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=82.48 E-value=2.9 Score=36.71 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCCEEEecC--------C----cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022982 104 KEYVEDCKQVGFDTIELNV--------G----SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISd--------G----ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
++.++.+|+.||++|-|=- + .-.-..+...+++++|+++||+|+--++..+...+-+ + -.
T Consensus 41 ~d~~~~lk~~G~n~VRl~vw~~~~~~~~~~~~~g~~~l~~~~~~~~~a~~~Gl~v~ldlH~sd~wadp~--~------q~ 112 (387)
T d1ur4a_ 41 QDIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADFHYSDFWADPA--K------QK 112 (387)
T ss_dssp CCHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCEEEEEECSSSSCCSSS--C------CC
T ss_pred ccHHHHHHHcCCCEEEeecccCCcccccCcCCCccccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCC--C------CC
Confidence 4578889999999999721 0 0122356677899999999999999998755543322 1 11
Q ss_pred ccCCCCccccccHHH-HH----HHHHHHHHccCcEEEEec
Q 022982 172 ARAPRSTEYVEDVDL-LI----RRAERCLEAGADMIMIDS 206 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~-~I----~~~~~dLeAGA~~ViiEa 206 (289)
.|..|......+..+ +. ..+++...+|+...|+|-
T Consensus 113 ~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei 152 (387)
T d1ur4a_ 113 APKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQV 152 (387)
T ss_dssp CCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CchhhhccchhHHHHHHHHHHHHHHHHHhhcCCCccEEEE
Confidence 355564432211111 11 234556678898889984
|
| >d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Deoxyribonuclease TatD (MttC) species: Escherichia coli [TaxId: 562]
Probab=82.41 E-value=5.4 Score=33.29 Aligned_cols=172 Identities=16% Similarity=0.157 Sum_probs=104.2
Q ss_pred CCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccCh----hHHHHHHHHHHhCCceecC--C-cHH-
Q 022982 21 PRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK----PFIEEVVKRAHQHDVYVST--G-DWA- 92 (289)
Q Consensus 21 PR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~----~~l~eKI~l~~~~gV~v~~--G-tlf- 92 (289)
-|..|++-++-+|. .+...+..++.+..| +.+..+.|-+.-+-. ..+....+++++..+..-+ | .++
T Consensus 24 a~~~gV~~ii~~~~----~~~~~~~~~~la~~~-~~v~~a~GiHP~~~~~~~~~~~~~~~~~~~~~~~vaIGEiGLD~~~ 98 (260)
T d1xwya1 24 AFDAGVNGLLITGT----NLRESQQAQKLARQY-SSCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNR 98 (260)
T ss_dssp HHHTTCCEEEECCC----SHHHHHHHHHHHHHS-TTEEEEECCCGGGGGGCCHHHHHHHHHHHTSTTEEEEEEEEEETTT
T ss_pred HHHCCCCEEEEecC----CHHHHHHHHHHHHhC-CcccchhhcCcchhhhhhhhHHHHHHHHHhcchhhhhhhhcccccc
Confidence 35679999999998 677999999998888 568888888774332 3344444555555442222 2 111
Q ss_pred ---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 022982 93 ---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (289)
Q Consensus 93 ---E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 169 (289)
....+|. .|.+-++.+++++-..|==+-+. .+ ++++.+++...+.. -++-...+ |
T Consensus 99 ~~~~~~~q~~--~f~~ql~lA~~~~lPviiH~r~a----~~---~~~~il~~~~~~~~--~~v~H~f~--g--------- 156 (260)
T d1xwya1 99 NFSTPEEQER--AFVAQLRIAADLNMPVFMHCRDA----HE---RFMTLLEPWLDKLP--GAVLHCFT--G--------- 156 (260)
T ss_dssp CSSCHHHHHH--HHHHHHHHHHHHTCCEEEEEESC----HH---HHHHHHGGGGGGSS--CEEECSCC--C---------
T ss_pred cccchHHHHH--HHHHHHHHHHhcCCceEeeeccc----hh---HHHHHHHHhhccCc--ccchhhhh--c---------
Confidence 1122333 68888999999998887555443 23 34444444211111 11211111 1
Q ss_pred ccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch
Q 022982 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 241 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~ 241 (289)
. .+++++.++.|.+.-+-= .++... +...+.+++..+|++||+.|...|-
T Consensus 157 -----------~------~~~~~~~~~~g~~~s~~g--~~~~~~---~~~~~~~~~~~iPldrlllETD~P~ 206 (260)
T d1xwya1 157 -----------T------REEMQACVAHGIYIGITG--WVCDER---RGLELRELLPLIPAEKLLIETDAPY 206 (260)
T ss_dssp -----------C------HHHHHHHHHTTCEEEECG--GGGCTT---TSHHHHHHGGGSCGGGEEECCCTTS
T ss_pred -----------c------HHHHHHhhhhccccccCc--cccchh---hHHHHHHHHHhhhhhheeeecCCCC
Confidence 1 578888999998764421 123222 2345777889999999999987653
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=81.76 E-value=0.78 Score=39.12 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCEEEecC----------CcccC--------ChhHHHHHHHHHHHcCCcccceeee
Q 022982 105 EYVEDCKQVGFDTIELNV----------GSLEI--------PEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISd----------Gti~i--------~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
+-|.++|+|||++|+++= ...+. +.++..++|+.+.++|++|.-.+-.
T Consensus 57 ~kLdyl~~lGi~~I~l~Pv~~~~~~~gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~ 122 (382)
T d1wzla3 57 DRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVF 122 (382)
T ss_dssp HTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred HhhHHHHHCCCCEEEECCcCCCCcccCCccccccccccCCCCHHHHHHHHHHHHhcccceEeeeee
Confidence 336688999999999973 11111 5689999999999999999988755
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=81.40 E-value=0.89 Score=39.97 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=36.9
Q ss_pred HHHHHHcCCCEEEecC---------------------------CcccCC------------hhHHHHHHHHHHHcCCccc
Q 022982 107 VEDCKQVGFDTIELNV---------------------------GSLEIP------------EETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 107 l~~~k~lGF~~IEISd---------------------------Gti~i~------------~~~r~~lI~~~~~~G~~v~ 147 (289)
|.++++||+++|+++= .+..++ .++..++|+.|.++|++|+
T Consensus 49 Ldyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~~~~~y~GY~~~d~~~vdp~y~~~~~~~Gt~~d~~~LV~~aH~~GIrVi 128 (475)
T d1bf2a3 49 ASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVY 128 (475)
T ss_dssp HHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHcCCCEEEeCCCCcCCCcccccccccccCcCCCCCCcccCCCcCcccccCCCCCCCHHHHHHHHHHHHhcCcEEE
Confidence 5678999999999982 122343 4679999999999999999
Q ss_pred ceeeee
Q 022982 148 PKFAVM 153 (289)
Q Consensus 148 ~E~g~k 153 (289)
-.+-..
T Consensus 129 lD~V~N 134 (475)
T d1bf2a3 129 MDVVYN 134 (475)
T ss_dssp EEECCS
T ss_pred EEeccc
Confidence 888653
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.85 E-value=0.9 Score=38.80 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=35.3
Q ss_pred HHHHHHcCCCEEEecCC--------ccc----------CChhHHHHHHHHHHHcCCcccceeee
Q 022982 107 VEDCKQVGFDTIELNVG--------SLE----------IPEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 107 l~~~k~lGF~~IEISdG--------ti~----------i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
|+++++|||++|+++== .-. =+.++..++|+.+.++|++|+-.+-.
T Consensus 59 ldyl~~LGv~~i~L~Pi~~~~~~~gy~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~ 122 (382)
T d1j0ha3 59 LDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVF 122 (382)
T ss_dssp HHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHcCCCEEEeCCCCcCCcccCCCcccccccCCCCCCHHHHHHHHHHhhhccceEEEEeee
Confidence 45778999999999641 000 13578899999999999999988855
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=80.84 E-value=1.2 Score=36.84 Aligned_cols=52 Identities=8% Similarity=-0.102 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccC--------------ChhHHHHHHHHHHHcCCcccceeee
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLEI--------------PEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i--------------~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
..+++.++.+|++||++|-+.-..... ..+...++++.|+++|++|+.++..
T Consensus 39 ~~~~~~l~~~k~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vi~~l~~ 104 (370)
T d1rh9a1 39 IKVTNTFQQASKYKMNVARTWAFSHGGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVN 104 (370)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSCSSSSSCSEEETTEECHHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred HHHHHHHHHHHHCCCeEEEECCccCccCcccCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEeccc
Confidence 368999999999999999985322211 1233457899999999999988864
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=80.81 E-value=3.6 Score=35.21 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=83.5
Q ss_pred EecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC------Cc-HHHHHHHhCCc
Q 022982 29 MRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST------GD-WAEHLIRNGPS 101 (289)
Q Consensus 29 V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~------Gt-lfE~a~~qg~~ 101 (289)
++.|.. ....++.+.+.|-+| ++.+-.++|. .+.--.++++..+|.+++ |. -.|.-+..
T Consensus 43 lL~p~~----t~e~i~~lc~~A~~~------~~aaVcV~P~-~v~~a~~~L~gs~v~v~tVigFP~G~~~~~~K~~E--- 108 (251)
T d1o0ya_ 43 NLKPFA----TPDDIKKLCLEAREN------RFHGVCVNPC-YVKLAREELEGTDVKVVTVVGFPLGANETRTKAHE--- 108 (251)
T ss_dssp ECCTTC----CHHHHHHHHHHHHHH------TCSEEEECGG-GHHHHHHHHTTSCCEEEEEESTTTCCSCHHHHHHH---
T ss_pred CCCCCC----CHHHHHHHHHHHhhc------CceEEEECHH-HHHHHHHHhcCCCceEEeeccCCCCCCcHHHHHHH---
Confidence 566777 566888888888654 7877777775 477777777888887763 42 33332222
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHH---HHHHHHHHHc--C--CcccceeeeecCCCCCCCccccccccccccC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETL---LRYVRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r---~~lI~~~~~~--G--~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
.++|-+.|-|-|++=-..-.+-..++ .+-|+.+++. | +||+-|.+.
T Consensus 109 -----a~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~---------------------- 161 (251)
T d1o0ya_ 109 -----AIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCY---------------------- 161 (251)
T ss_dssp -----HHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGG----------------------
T ss_pred -----HHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeecccc----------------------
Confidence 35577789999886443332211222 1222222221 2 122221111
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHH
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKV 224 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~i 224 (289)
+ +.+++++..+-+++||||+|=.= -|.. .+....+.+.-+
T Consensus 162 -L------~~~e~~~a~~ia~~aGadfvKTS-TGf~--~~gat~e~V~~m 201 (251)
T d1o0ya_ 162 -L------DTEEKIAACVISKLAGAHFVKTS-TGFG--TGGATAEDVHLM 201 (251)
T ss_dssp -C------CHHHHHHHHHHHHHTTCSEEECC-CSSS--SCCCCHHHHHHH
T ss_pred -c------CcHHHHHHHHHHHHhCcceeecc-CCCC--CCCcCHHHHHHH
Confidence 1 46788899999999999998652 2321 133445555433
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=80.78 E-value=2.2 Score=35.71 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 179 (289)
++...+..+.+.+-|+++|||.-- .+...+.|+.++++ .|++-+ +. |..++
T Consensus 26 ~~~a~~~~~al~~~Gi~~iEitl~-----tp~a~~~I~~l~~~----~p~~~v--Ga-----------GTV~~------- 76 (213)
T d1wbha1 26 LEHAVPMAKALVAGGVRVLNVTLR-----TECAVDAIRAIAKE----VPEAIV--GA-----------GTVLN------- 76 (213)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEESC-----STTHHHHHHHHHHH----CTTSEE--EE-----------ESCCS-------
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCC-----ChhHHHHHHHHHHH----CCCCee--ec-----------ccccc-------
Confidence 346778889999999999999653 35678899998874 133322 00 12222
Q ss_pred ccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 180 YVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 180 ~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.+++++.++|||++++-=+
T Consensus 77 --------~~~~~~a~~aGa~FivSP~ 95 (213)
T d1wbha1 77 --------PQQLAEVTEAGAQFAISPG 95 (213)
T ss_dssp --------HHHHHHHHHHTCSCEEESS
T ss_pred --------HHHHHHHHHCCCcEEECCC
Confidence 5788889999999999766
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=80.25 E-value=11 Score=32.59 Aligned_cols=86 Identities=28% Similarity=0.312 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCCEEEecCC--cc----------------cCChhHHHHHH----HHHHHcCCcccceeeeecCCCCCC
Q 022982 103 FKEYVEDCKQVGFDTIELNVG--SL----------------EIPEETLLRYV----RLVKSAGLKAKPKFAVMFNKSDIP 160 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdG--ti----------------~i~~~~r~~lI----~~~~~~G~~v~~E~g~k~~~~evg 160 (289)
|-+=-..|++.|||.|||..+ .+ -=+.+.|+|+. +.+++.. -..++++...++.
T Consensus 145 f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~---~~~~~vr~~~~~~- 220 (337)
T d1z41a1 145 FKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW---DGPLFVRVSASDY- 220 (337)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC---CSCEEEEEECCCC-
T ss_pred HHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhh---cccceEEeccccc-
Confidence 334445577899999999653 32 11346676554 4444431 2345555432221
Q ss_pred CccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecccc
Q 022982 161 SDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDV 209 (289)
Q Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI 209 (289)
. ++-.|.++.++.++..-++|++++-+-+...
T Consensus 221 ----------------~-~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~ 252 (337)
T d1z41a1 221 ----------------T-DKGLDIADHIGFAKWMKEQGVDLIDCSSGAL 252 (337)
T ss_dssp ----------------S-TTSCCHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ----------------c-cCccchhhhHHHHHHHHHcCCcccccccccc
Confidence 0 1112688899999999999999998866533
|