Citrus Sinensis ID: 023022

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MATKAKEEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF
cccccccccccccccccccEEEEEEEcccEEEEEEEcccEEEEEccccccccccccEEEEEccccHHHccHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHccccccEEEEEEEEEccccEEEEcccEEEEEEEccccccccEEEEEEEcccccHHHHcccHHHHHHHHHccEEEcccccccEEEEEcccccccccHHHHHHcccccEEEEEcccccccccHHHHHcccccHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHccccccccEEEccccc
cccccccccccccccccccccEEEEEEcccccEEEEcccEEEEEcccccHHHHHHcEEEEEccccccccccHHHHHccccccccccEEEccHHHHHHHHHHHHHccccccccccEEEEEEccccEEEEcccEEEEEEEccccccccEEEEEEcccccHHHHccccccHHHHHHccccEEcccccccEEEEEccccccHcHHHHHHHHHcccEEEEEccccccHHHHHHHHHccccHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHccccEccccccc
MATKAKEeeksgrgmqlqgykveglsiaghetciifpsldlafdigrcpsralsqnFLFISHAHMDHIGGLPMYVAtrglyrmkpptiivpsCIKEDVEQLFEVHRRMDhselnhtlvgldvgeefCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLkssgteitytvttpevaftgdtmsdfiVDEANIDVLRARILVMEstyvddsttveQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAvdavpaplaGRVFALTEGF
matkakeeeksgrgmqlqGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLglpgdeikklkssgteitytvttpevaftgdTMSDFIVDEANIDVLRARILVMestyvddsttveQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVdavpaplagrvfaltegf
MATKAKEEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF
*****************QGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFAL****
*******************YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF
***************QLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF
******************GYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFA*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATKAKEEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query288 2.2.26 [Sep-21-2011]
Q8LGU7280 Nuclear ribonuclease Z OS yes no 0.958 0.985 0.753 1e-125
Q8L633354 Ribonuclease Z, chloropla no no 0.958 0.779 0.543 2e-92
P60193176 Nuclear ribonuclease Z (F N/A no 0.590 0.965 0.741 5e-74
B9LQT0310 Ribonuclease Z OS=Halorub yes no 0.763 0.709 0.290 1e-12
Q49XV1306 Ribonuclease Z OS=Staphyl yes no 0.711 0.669 0.272 5e-12
B9DNT1306 Ribonuclease Z OS=Staphyl yes no 0.701 0.660 0.275 1e-11
A4YHP1291 Ribonuclease Z OS=Metallo yes no 0.756 0.749 0.269 3e-11
Q973F1293 Ribonuclease Z OS=Sulfolo yes no 0.722 0.709 0.28 2e-10
Q4J9A4292 Ribonuclease Z OS=Sulfolo yes no 0.666 0.657 0.273 2e-10
Q9HN60308 Ribonuclease Z OS=Halobac yes no 0.701 0.655 0.274 6e-10
>sp|Q8LGU7|RNZN_ARATH Nuclear ribonuclease Z OS=Arabidopsis thaliana GN=NUZ PE=2 SV=3 Back     alignment and function desciption
 Score =  447 bits (1150), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 208/276 (75%), Positives = 240/276 (86%)

Query: 13  RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
           + MQ++GY +EGLSI GHETCIIFPSL +AFDIGRCP RA+SQ+FLFISH+HMDHIGGLP
Sbjct: 5   KAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGLP 64

Query: 73  MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
           MYVATRGLY+MKPPTIIVP+ IKE VE LFEVHR++D SEL H LVGLD+GEEF +RKDL
Sbjct: 65  MYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIRKDL 124

Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
            VKAFKT+HVIQSQGYVVYS K KLK+EY+GL G+EIK LK SG EIT ++ TPEVAFTG
Sbjct: 125 KVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAFTG 184

Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
           DT SDF+VDE N D L+A++LVMEST++DDS +VE ARDYGH H+SEIV +AEKFENKAI
Sbjct: 185 DTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEIVNHAEKFENKAI 244

Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
           LLIHFSAR+ V EI  AV A+P PL GRVFALT+GF
Sbjct: 245 LLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 280
Zinc phosphodiesterase, which displays some tRNA 3'-processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 1EC: 1
>sp|Q8L633|RNZC_ARATH Ribonuclease Z, chloroplastic OS=Arabidopsis thaliana GN=CPZ PE=2 SV=1 Back     alignment and function description
>sp|P60193|RNZN_WHEAT Nuclear ribonuclease Z (Fragment) OS=Triticum aestivum GN=ELAC PE=1 SV=1 Back     alignment and function description
>sp|B9LQT0|RNZ_HALLT Ribonuclease Z OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rnz PE=3 SV=1 Back     alignment and function description
>sp|Q49XV1|RNZ_STAS1 Ribonuclease Z OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rnz PE=3 SV=1 Back     alignment and function description
>sp|B9DNT1|RNZ_STACT Ribonuclease Z OS=Staphylococcus carnosus (strain TM300) GN=rnz PE=3 SV=1 Back     alignment and function description
>sp|A4YHP1|RNZ_METS5 Ribonuclease Z OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rnz PE=3 SV=1 Back     alignment and function description
>sp|Q973F1|RNZ_SULTO Ribonuclease Z OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rnz PE=3 SV=1 Back     alignment and function description
>sp|Q4J9A4|RNZ_SULAC Ribonuclease Z OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rnz PE=3 SV=1 Back     alignment and function description
>sp|Q9HN60|RNZ_HALSA Ribonuclease Z OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rnz PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
224124030272 predicted protein [Populus trichocarpa] 0.944 1.0 0.797 1e-128
297734015330 unnamed protein product [Vitis vinifera] 0.968 0.845 0.759 1e-127
225456689290 PREDICTED: nuclear ribonuclease Z isofor 0.968 0.962 0.759 1e-127
297839343280 hypothetical protein ARALYDRAFT_476606 [ 0.958 0.985 0.760 1e-124
356575345279 PREDICTED: nuclear ribonuclease Z-like [ 0.965 0.996 0.744 1e-123
30699037280 nuclear ribonuclease Z [Arabidopsis thal 0.958 0.985 0.753 1e-123
12324792281 unknown protein; 121665-123450 [Arabidop 0.958 0.982 0.750 1e-122
388522475335 unknown [Medicago truncatula] 0.979 0.841 0.716 1e-121
5882718290 ESTs gb|AA067482 and gb|AI100542 come fr 0.958 0.951 0.727 1e-119
255540937269 ribonuclease z, chloroplast, putative [R 0.888 0.951 0.777 1e-117
>gi|224124030|ref|XP_002330087.1| predicted protein [Populus trichocarpa] gi|222871221|gb|EEF08352.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/272 (79%), Positives = 244/272 (89%)

Query: 17  LQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVA 76
           ++GY VEGLSI GHETCIIF SL++AFDIGRCP RA+SQ+FLFISHAHMDHIGGLPMYVA
Sbjct: 1   IEGYPVEGLSIGGHETCIIFSSLNMAFDIGRCPQRAISQDFLFISHAHMDHIGGLPMYVA 60

Query: 77  TRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKA 136
           TRGLYRMKPPT++VP+CIKE VEQLFEVHRR+D SEL H L+ LDVG+EF +RKDL V+A
Sbjct: 61  TRGLYRMKPPTVVVPTCIKETVEQLFEVHRRLDGSELKHHLIALDVGQEFYVRKDLKVRA 120

Query: 137 FKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMS 196
           FKTYH IQSQGYVVYSVKQKLKQEYLGL G+EIK LKSSG EIT TVT+PE+AFTGDTMS
Sbjct: 121 FKTYHAIQSQGYVVYSVKQKLKQEYLGLSGNEIKSLKSSGVEITNTVTSPEIAFTGDTMS 180

Query: 197 DFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIH 256
           DFI+DE NIDVLRA++LVMEST+VD + TVE ARDYGHTHL EIV YA+KF+NKAILLIH
Sbjct: 181 DFIIDETNIDVLRAKVLVMESTFVDGTVTVEHARDYGHTHLFEIVNYADKFQNKAILLIH 240

Query: 257 FSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
           FSAR+ V EI+ AV  +P PLAGRVFALTEGF
Sbjct: 241 FSARYTVKEIQEAVQRLPQPLAGRVFALTEGF 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734015|emb|CBI15262.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456689|ref|XP_002273058.1| PREDICTED: nuclear ribonuclease Z isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297839343|ref|XP_002887553.1| hypothetical protein ARALYDRAFT_476606 [Arabidopsis lyrata subsp. lyrata] gi|297333394|gb|EFH63812.1| hypothetical protein ARALYDRAFT_476606 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356575345|ref|XP_003555802.1| PREDICTED: nuclear ribonuclease Z-like [Glycine max] Back     alignment and taxonomy information
>gi|30699037|ref|NP_177608.2| nuclear ribonuclease Z [Arabidopsis thaliana] gi|88984765|sp|Q8LGU7.3|RNZN_ARATH RecName: Full=Nuclear ribonuclease Z; Short=RNase Z; AltName: Full=Zinc phosphodiesterase NUZ; AltName: Full=tRNA 3 endonuclease; AltName: Full=tRNase Z gi|20975609|emb|CAD22100.1| RNase Z [Arabidopsis thaliana] gi|90962972|gb|ABE02410.1| At1g74700 [Arabidopsis thaliana] gi|332197502|gb|AEE35623.1| nuclear ribonuclease Z [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|12324792|gb|AAG52354.1|AC011765_6 unknown protein; 121665-123450 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388522475|gb|AFK49299.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|5882718|gb|AAD55271.1|AC008263_2 ESTs gb|AA067482 and gb|AI100542 come from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255540937|ref|XP_002511533.1| ribonuclease z, chloroplast, putative [Ricinus communis] gi|223550648|gb|EEF52135.1| ribonuclease z, chloroplast, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
TAIR|locus:2019235280 TRZ1 "tRNAse Z1" [Arabidopsis 0.968 0.996 0.75 1.8e-112
TAIR|locus:2058374354 CPZ [Arabidopsis thaliana (tax 0.958 0.779 0.543 9.1e-84
UNIPROTKB|G4NGZ0381 MGG_17714 "Uncharacterized pro 0.590 0.446 0.311 6.1e-15
UNIPROTKB|Q29RY4363 ELAC1 "Zinc phosphodiesterase 0.468 0.371 0.301 5e-07
UNIPROTKB|I3LGH2367 LOC100524839 "Uncharacterized 0.430 0.337 0.293 1.3e-06
TIGR_CMR|BA_4364307 BA_4364 "ribonuclease Z" [Baci 0.697 0.654 0.261 3.2e-06
MGI|MGI:1890495362 Elac1 "elaC homolog 1 (E. coli 0.468 0.372 0.301 5.5e-06
RGD|1304757362 Elac1 "elaC homolog 1 (E. coli 0.468 0.372 0.295 1.2e-05
UNIPROTKB|E2R4S6363 ELAC1 "Uncharacterized protein 0.468 0.371 0.283 1.4e-05
UNIPROTKB|Q9H777363 ELAC1 "Zinc phosphodiesterase 0.434 0.344 0.288 8.1e-05
TAIR|locus:2019235 TRZ1 "tRNAse Z1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
 Identities = 210/280 (75%), Positives = 242/280 (86%)

Query:     9 EKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHI 68
             EK  + MQ++GY +EGLSI GHETCIIFPSL +AFDIGRCP RA+SQ+FLFISH+HMDHI
Sbjct:     2 EKK-KAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHI 60

Query:    69 GGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCM 128
             GGLPMYVATRGLY+MKPPTIIVP+ IKE VE LFEVHR++D SEL H LVGLD+GEEF +
Sbjct:    61 GGLPMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFII 120

Query:   129 RKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEV 188
             RKDL VKAFKT+HVIQSQGYVVYS K KLK+EY+GL G+EIK LK SG EIT ++ TPEV
Sbjct:   121 RKDLKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEV 180

Query:   189 AFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE 248
             AFTGDT SDF+VDE N D L+A++LVMEST++DDS +VE ARDYGH H+SEIV +AEKFE
Sbjct:   181 AFTGDTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEIVNHAEKFE 240

Query:   249 NKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
             NKAILLIHFSAR+ V EI  AV A+P PL GRVFALT+GF
Sbjct:   241 NKAILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 280
GO:0005634 "nucleus" evidence=ISM;TAS
GO:0008033 "tRNA processing" evidence=TAS
GO:0042781 "3'-tRNA processing endoribonuclease activity" evidence=IDA
GO:0042780 "tRNA 3'-end processing" evidence=IDA
GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2058374 CPZ [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4NGZ0 MGG_17714 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RY4 ELAC1 "Zinc phosphodiesterase ELAC protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LGH2 LOC100524839 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4364 BA_4364 "ribonuclease Z" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
MGI|MGI:1890495 Elac1 "elaC homolog 1 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1304757 Elac1 "elaC homolog 1 (E. coli)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R4S6 ELAC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H777 ELAC1 "Zinc phosphodiesterase ELAC protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LGU7RNZN_ARATH3, ., 1, ., 2, 6, ., 1, 10.75360.95830.9857yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.26.110.979
3rd Layer3.1.260.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.129.19.1
hypothetical protein (272 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
COG1234292 COG1234, ElaC, Metal-dependent hydrolases of the b 6e-22
TIGR02651299 TIGR02651, RNase_Z, ribonuclease Z 3e-18
TIGR02650277 TIGR02650, RNase_Z_T_toga, ribonuclease Z, Thermot 5e-12
pfam12706197 pfam12706, Lactamase_B_2, Beta-lactamase superfami 1e-11
PRK00055270 PRK00055, PRK00055, ribonuclease Z; Reviewed 5e-11
COG0595 555 COG0595, COG0595, mRNA degradation ribonucleases J 7e-06
COG1236 427 COG1236, YSH1, Predicted exonuclease of the beta-l 2e-05
COG1235269 COG1235, PhnP, Metal-dependent hydrolases of the b 1e-04
TIGR02649303 TIGR02649, true_RNase_BN, ribonuclease BN 2e-04
>gnl|CDD|224155 COG1234, ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information 
 Score = 92.5 bits (230), Expect = 6e-22
 Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 39/223 (17%)

Query: 58  LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
           +FI+H H DHI GLP  + +R    R +P  I  P  IKE VE       R+ +S+L + 
Sbjct: 57  IFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVET----SLRLSYSKLTYE 112

Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLPGDEI 169
           ++G ++ E+        V+A +  H + + GY +           +KLK      PG  I
Sbjct: 113 IIGHEIEED-----AFEVEALELDHGVPALGYRIEEPDRPGRFDAEKLKGL---PPGPLI 164

Query: 170 KKLKSSGTEITYTVTTPE-----------VAFTGDTM-SDFIVDEANIDVLRARILVMES 217
             LK +G  +   V TP            V ++GDT   D ++D A      A +L+ E+
Sbjct: 165 TALK-AGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCDELIDLAK----GADLLIHEA 219

Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
           T+ DD    + A + GH+   E  E A++   K ++L HFS R
Sbjct: 220 TFEDDL--EDLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPR 260

Length = 292
>gnl|CDD|233963 TIGR02651, RNase_Z, ribonuclease Z Back     alignment and domain information
>gnl|CDD|188239 TIGR02650, RNase_Z_T_toga, ribonuclease Z, Thermotoga type Back     alignment and domain information
>gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain Back     alignment and domain information
>gnl|CDD|234602 PRK00055, PRK00055, ribonuclease Z; Reviewed Back     alignment and domain information
>gnl|CDD|223668 COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|224156 COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>gnl|CDD|131697 TIGR02649, true_RNase_BN, ribonuclease BN Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 288
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me 100.0
TIGR02649303 true_RNase_BN ribonuclease BN. Members of this pro 100.0
TIGR02651299 RNase_Z ribonuclease Z. Processing of the 3-prime 100.0
COG1234292 ElaC Metal-dependent hydrolases of the beta-lactam 100.0
PRK02126334 ribonuclease Z; Provisional 100.0
PRK02113252 putative hydrolase; Provisional 99.97
PRK11244250 phnP carbon-phosphorus lyase complex accessory pro 99.96
PRK00055270 ribonuclease Z; Reviewed 99.96
TIGR03307238 PhnP phosphonate metabolism protein PhnP. This fam 99.95
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB 99.95
PF12706194 Lactamase_B_2: Beta-lactamase superfamily domain; 99.92
KOG2121746 consensus Predicted metal-dependent hydrolase (bet 99.92
TIGR02108302 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. 99.91
TIGR00649 422 MG423 conserved hypothetical protein. Contains an 99.9
COG1782 637 Predicted metal-dependent RNase, consists of a met 99.89
PRK00685228 metal-dependent hydrolase; Provisional 99.87
TIGR03675 630 arCOG00543 arCOG00543 universal archaeal KH-domain 99.86
PRK04286298 hypothetical protein; Provisional 99.83
COG1236 427 YSH1 Predicted exonuclease of the beta-lactamase f 99.8
COG0595 555 mRNA degradation ribonucleases J1/J2 (metallo-beta 99.76
PF02112335 PDEase_II: cAMP phosphodiesterases class-II; Inter 99.73
PRK11709355 putative L-ascorbate 6-phosphate lactonase; Provis 99.71
KOG1136 501 consensus Predicted cleavage and polyadenylation s 99.71
COG1235269 PhnP Metal-dependent hydrolases of the beta-lactam 99.69
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 99.56
COG5212356 PDE1 Low-affinity cAMP phosphodiesterase [Signal t 99.55
KOG1137 668 consensus mRNA cleavage and polyadenylation factor 99.49
PF13483163 Lactamase_B_3: Beta-lactamase superfamily domain; 99.42
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 99.42
PRK11921 394 metallo-beta-lactamase/flavodoxin domain-containin 99.39
PLN02469258 hydroxyacylglutathione hydrolase 99.36
PLN02398329 hydroxyacylglutathione hydrolase 99.31
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 99.3
PLN02962251 hydroxyacylglutathione hydrolase 99.29
PRK05452 479 anaerobic nitric oxide reductase flavorubredoxin; 99.28
COG2220258 Predicted Zn-dependent hydrolases of the beta-lact 99.27
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 99.23
KOG1135 764 consensus mRNA cleavage and polyadenylation factor 99.11
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 99.1
KOG0813265 consensus Glyoxylase [General function prediction 98.98
COG1237259 Metal-dependent hydrolases of the beta-lactamase s 98.95
KOG1361 481 consensus Predicted hydrolase involved in interstr 98.89
TIGR00361662 ComEC_Rec2 DNA internalization-related competence 98.89
COG2248304 Predicted hydrolase (metallo-beta-lactamase superf 98.81
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 98.78
PRK11539755 ComEC family competence protein; Provisional 98.71
COG2333293 ComEC Predicted hydrolase (metallo-beta-lactamase 98.45
KOG0814237 consensus Glyoxylase [General function prediction 98.32
KOG3798343 consensus Predicted Zn-dependent hydrolase (beta-l 97.7
PF1369163 Lactamase_B_4: tRNase Z endonuclease 97.39
PF14597199 Lactamase_B_5: Metallo-beta-lactamase superfamily; 96.77
KOG2121 746 consensus Predicted metal-dependent hydrolase (bet 96.76
COG2015 655 Alkyl sulfatase and related hydrolases [Secondary 96.57
KOG1138 653 consensus Predicted cleavage and polyadenylation s 96.03
KOG4736302 consensus Uncharacterized conserved protein [Funct 90.74
PF0752143 RMMBL: RNA-metabolising metallo-beta-lactamase; In 85.95
KOG3592 934 consensus Microtubule-associated proteins [Cytoske 85.71
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type Back     alignment and domain information 
Probab=100.00  E-value=1.3e-39  Score=281.32  Aligned_cols=246  Identities=18%  Similarity=0.180  Sum_probs=201.5

Q ss_pred             EEEeeecCceeEEEeCCceEEEe-CCCCCcccc-----CcCEEEEecCChhhhCcHHHHHHHh--CCCCCCCCEEeCCcc
Q 023022           22 VEGLSIAGHETCIIFPSLDLAFD-IGRCPSRAL-----SQNFLFISHAHMDHIGGLPMYVATR--GLYRMKPPTIIVPSC   93 (288)
Q Consensus        22 v~g~~~~~~~s~~~i~~~~iLiD-~G~~~~~~~-----~i~~I~iTH~H~DH~~gl~~ll~~~--~~~~~~~~~i~~p~~   93 (288)
                      ++|.|.+..+||+.+....+||| +|.++...+     .++.+||||+|.||++|++.++...  ...+.+++.||+|++
T Consensus         2 ~~g~s~a~~~t~~~~~~~~ilfD~ag~g~~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g   81 (277)
T TIGR02650         2 IIGFFKAAFFSTIIYSPEEIIFDAAEEGSSTLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKE   81 (277)
T ss_pred             ceeeechhheEEEEECchhheehhhcccchhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcc
Confidence            47889999999999999999999 999886543     5999999999999999998776633  333567889999999


Q ss_pred             hHHHHHHHHHhhhhcCC-CCCceEEEEcCCCCeEEecC---CeEEEEEEcCCcC---CcceEEEEEeccccchhhcCCCh
Q 023022           94 IKEDVEQLFEVHRRMDH-SELNHTLVGLDVGEEFCMRK---DLFVKAFKTYHVI---QSQGYVVYSVKQKLKQEYLGLPG  166 (288)
Q Consensus        94 ~~~~l~~~~~~~~~~~~-~~~~~~~~~l~~g~~~~i~~---~~~i~~~~~~H~~---~~~g~~i~~~~~~~~~~~~g~~~  166 (288)
                      +.+.++.++.....++. ....+.+.+++.++.+.+..   .+.|+++++.|.+   +|.||.|.+.++|||+++.|+|+
T Consensus        82 ~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~  161 (277)
T TIGR02650        82 GNAAEEETSEFIKAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDK  161 (277)
T ss_pred             hhHHHHHHHHHHHHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCH
Confidence            88888854444332221 12234556667777777642   3899999999996   89999999999999999999999


Q ss_pred             HHHHHHHhcC-ceecceEeCCeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHH
Q 023022          167 DEIKKLKSSG-TEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAE  245 (288)
Q Consensus       167 ~~l~~l~~~G-~~i~~~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~  245 (288)
                      .++++|+++| .+++++...++++|+|||.++.     ...+.++|+|||||||.+...    ...++|++..++++.++
T Consensus       162 ~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~~-----~~~a~~adlLIhEaTf~d~~~----~~~~gH~t~~eaa~~A~  232 (277)
T TIGR02650       162 KEARLLKEEGGDDFTREEHHKILLIIGDDLAAD-----DEEEEGGEELIHECCFFDDAD----DRRKKHAAADDEMEESK  232 (277)
T ss_pred             HHHHHHHHhCCccccccccCcEEEEeCCCCCCC-----hHHhcCCCEEEEecccccccc----cccCCCCCHHHHHHHHH
Confidence            9999999876 8899999999999999999852     256789999999999998762    13578999999999999


Q ss_pred             HcCCCeEEEEeccCCCChhHHHHHHHhCCCc
Q 023022          246 KFENKAILLIHFSARHKVDEIRRAVDAVPAP  276 (288)
Q Consensus       246 ~~~~~~~~l~H~~~~~~~~~~~~~~~~~~~~  276 (288)
                      +.++++++|+||++||..+++.++++++...
T Consensus       233 ~a~vk~LiLtH~Ssry~~~~~~~~~~~~~~~  263 (277)
T TIGR02650       233 KAAGKKKIILHHISRRIIRILKSIIKKREEE  263 (277)
T ss_pred             HcCCCEEEEEeecccccHHHHHHHHHHHHhh
Confidence            9999999999999999887766666555333

Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
>TIGR02649 true_RNase_BN ribonuclease BN Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z Back     alignment and domain information
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>PRK02126 ribonuclease Z; Provisional Back     alignment and domain information
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>PRK00055 ribonuclease Z; Reviewed Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>PRK04286 hypothetical protein; Provisional Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 Back     alignment and domain information
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>KOG0813 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] Back     alignment and domain information
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 Back     alignment and domain information
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>KOG0814 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PF13691 Lactamase_B_4: tRNase Z endonuclease Back     alignment and domain information
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG4736 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs Back     alignment and domain information
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
1ww1_A280 Crystal Structure Of Trnase Z From Thermotoga Marit 5e-12
4gcw_A320 Crystal Structure Of Rnase Z In Complex With Precur 4e-07
1y44_A320 Crystal Structure Of Rnase Z Length = 320 8e-07
2fk6_A320 Crystal Structure Of Rnase ZTRNA(THR) COMPLEX Lengt 5e-06
2cbn_A306 Crystal Structure Of Zipd From Escherichia Coli Len 7e-05
3zwf_A368 Crystal Structure Of Human Trnase Z, Short Form (El 7e-05
>pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima Length = 280 Back     alignment and structure 
Iteration: 1

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 27/255 (10%)
Query: 24  GLSIAGHETCIIFPSLDLAFDIGRCPSRALSQN-----FLFISHAHMDHIGGLPMYVATR 78
           G S A   T I +    + FD G   S  L        ++F++H H+DHI GL   V  R
Sbjct: 5   GFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIR 64
Query: 79  --GLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHS-ELNHTLVGLDVGEEFCMRK---- 130
             G+  R KP  +  P   +  VE+  E  +R +     +  +  L  GE   +R     
Sbjct: 65  NNGMGDREKPLDVFYPEGNRA-VEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAGGF 123
Query: 131 DLFVKAFKTYHVIQ--SQGYVVYSVKQKLKQEYLGLPGDEIKKL-KSSGTE-ITYTVTTP 186
             +V+ F+T HV    S GY ++ V++KLK+E+ GL   EI +L K  G + +T      
Sbjct: 124 KRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYHKK 183
Query: 187 EVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEK 246
            +  +GD+++   +D   I      +L+ E T++D        R   H  + E++E  + 
Sbjct: 184 VLTISGDSLA---LDPEEIR--GTELLIHECTFLD----ARDRRYKNHAAIDEVMESVKA 234
Query: 247 FENKAILLIHFSARH 261
              K ++L H S R+
Sbjct: 235 AGVKKVILYHISTRY 249
>pdb|4GCW|A Chain A, Crystal Structure Of Rnase Z In Complex With Precursor Trna(Thr) Length = 320 Back     alignment and structure
>pdb|1Y44|A Chain A, Crystal Structure Of Rnase Z Length = 320 Back     alignment and structure
>pdb|2FK6|A Chain A, Crystal Structure Of Rnase ZTRNA(THR) COMPLEX Length = 320 Back     alignment and structure
>pdb|2CBN|A Chain A, Crystal Structure Of Zipd From Escherichia Coli Length = 306 Back     alignment and structure
>pdb|3ZWF|A Chain A, Crystal Structure Of Human Trnase Z, Short Form (Elac1). Length = 368 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 1e-56
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 3e-24
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 2e-23
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 1e-18
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 5e-16
3af5_A 651 Putative uncharacterized protein PH1404; archaeal 8e-10
2xr1_A 640 Cleavage and polyadenylation specificity factor 1 2e-09
2ycb_A 636 Beta-CAsp RNAse, cleavage and polyadenylation spec 8e-09
2i7t_A 459 Cleavage and polyadenylation specificity factor 73 1e-06
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 8e-05
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 7e-04
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Length = 280 Back     alignment and structure
 Score =  182 bits (465), Expect = 1e-56
 Identities = 66/283 (23%), Positives = 116/283 (40%), Gaps = 26/283 (9%)

Query: 22  VEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNF-----LFISHAHMDHIGGLPMYVA 76
           + G S A   T I +    + FD G   S  L         +F++H H+DHI GL   V 
Sbjct: 3   IIGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVN 62

Query: 77  TRGLY---RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKD-- 131
            R      R KP  +  P   +   E    + R       +  +  L  GE   +R    
Sbjct: 63  IRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAGG 122

Query: 132 --LFVKAFKTYHVIQ--SQGYVVYSVKQKLKQEYLGLPGDEIKKL-KSSGTE-ITYTVTT 185
              +V+ F+T HV    S GY ++ V++KLK+E+ GL   EI +L K  G + +T     
Sbjct: 123 FKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYHK 182

Query: 186 PEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAE 245
             +  +GD+++         ++    +L+ E T++D        R   H  + E++E  +
Sbjct: 183 KVLTISGDSLAL-----DPEEIRGTELLIHECTFLDA----RDRRYKNHAAIDEVMESVK 233

Query: 246 KFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
               K ++L H S R+ + +++  +      +        +  
Sbjct: 234 AAGVKKVILYHISTRY-IRQLKSVIKKYREEMPDVEILYMDPR 275
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Length = 320 Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Length = 306 Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Length = 368 Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636 Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} PDB: 1xto_A Length = 321 Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Length = 258 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 100.0
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 100.0
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 100.0
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 100.0
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 99.97
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 99.97
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 99.96
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 99.95
3kl7_A235 Putative metal-dependent hydrolase; structural gen 99.89
2az4_A 429 Hypothetical protein EF2904; structural genomics, 99.89
3iek_A 431 Ribonuclease TTHA0252; metallo beta lactamase fold 99.88
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 99.88
3af5_A 651 Putative uncharacterized protein PH1404; archaeal 99.85
2ycb_A 636 Beta-CAsp RNAse, cleavage and polyadenylation spec 99.85
3rpc_A264 Possible metal-dependent hydrolase; structural gen 99.85
2xr1_A 640 Cleavage and polyadenylation specificity factor 1 99.84
2i7t_A 459 Cleavage and polyadenylation specificity factor 73 99.84
2wyl_A360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 99.84
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-l 99.84
3zq4_A 555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 99.83
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 99.82
4b87_A 367 DNA cross-LINK repair 1A protein; dclre1A, DCLRE, 99.79
1vjn_A220 Zn-dependent hydrolase of metallo-beta-lactamase s 99.78
3zdk_A 336 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A 99.77
3adr_A261 Putative uncharacterized protein ST1585; quorum se 99.65
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 99.61
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 99.55
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 99.52
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 99.48
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 99.47
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 99.46
4efz_A298 Metallo-beta-lactamase family protein; structural 99.46
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 99.46
1xm8_A254 Glyoxalase II; structural genomics, protein struct 99.45
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 99.45
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 99.45
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 99.45
2bib_A 547 CBPE, teichoic acid phosphorylcholine esterase/ ch 99.44
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 99.44
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 99.43
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 99.42
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 99.42
1e5d_A 402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 99.42
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 99.42
3tp9_A 474 Beta-lactamase and rhodanese domain protein; struc 99.42
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 99.41
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 99.41
3r2u_A 466 Metallo-beta-lactamase family protein; structural 99.39
1ycg_A 398 Nitric oxide reductase; DIIRON site, oxidoreductas 99.38
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 99.36
2ohh_A 404 Type A flavoprotein FPRA; beta-lactamase like doma 99.36
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 99.35
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 99.35
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 99.33
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 99.33
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 99.33
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 99.3
2q9u_A 414 A-type flavoprotein; flavodoxin like, beta lactama 99.28
1ztc_A221 Hypothetical protein TM0894; structural genomics, 99.28
4dik_A410 Flavoprotein; TM0755, electron transport, DI-iron 99.27
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 99.24
3esh_A280 Protein similar to metal-dependent hydrolase; stru 99.23
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 99.23
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 99.21
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 99.21
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 99.18
2cfu_A 658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 99.1
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 98.98
2p97_A201 Hypothetical protein; putative metal-dependent hyd 98.95
2yhe_A 668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 98.47
3h3e_A267 Uncharacterized protein TM1679; structural genomic 98.65
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.5e-38  Score=289.22  Aligned_cols=262  Identities=25%  Similarity=0.336  Sum_probs=166.8

Q ss_pred             eEEEEeeec-----CceeEEEeC--CceEEEeCCCCCccc--------cCcCEEEEecCChhhhCcHHHHHHHhCCCC--
Q 023022           20 YKVEGLSIA-----GHETCIIFP--SLDLAFDIGRCPSRA--------LSQNFLFISHAHMDHIGGLPMYVATRGLYR--   82 (288)
Q Consensus        20 ~~v~g~~~~-----~~~s~~~i~--~~~iLiD~G~~~~~~--------~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~--   82 (288)
                      ++|+|.+.+     .+.+|+++.  +..+|||||.+.+.+        .+|++|||||.|.||++|++.|+..+...+  
T Consensus         3 l~~LGtg~~~p~~~r~~ss~ll~~~~~~iLiD~G~g~~~~l~~~~~~~~~id~I~iTH~H~DHi~gl~~l~~~~~~~~~~   82 (368)
T 3zwf_A            3 VTFLGTGAAYPSPTRGASAVVLRCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGLLCTISLQSGS   82 (368)
T ss_dssp             EEEEECBSSSCCSSSCSSEEEEEETTEEEEECCCTTHHHHHHHSSSCGGGEEEEECCCSSGGGTTTHHHHHHHHHHHC--
T ss_pred             EEEECCCCCCCCCCCCccEEEEEECCeEEEEeCChhHHHHHHHcCCChHHCCEEEECCCChHHhCcHHHHHHHhhhcccc
Confidence            677775432     346788775  569999999987532        269999999999999999999987643221  


Q ss_pred             ---CCCCEEeCCcchHHHHHHHHHhhhhcCCCCCceEEEEcCC---------------------------CCeEEe----
Q 023022           83 ---MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDV---------------------------GEEFCM----  128 (288)
Q Consensus        83 ---~~~~~i~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~---------------------------g~~~~i----  128 (288)
                         ..++.||+|+.+.+.+...+.....  ....++.++.+.+                           |+.+.+    
T Consensus        83 ~~~~~~l~iygp~~~~~~l~~~l~~~~~--~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~  160 (368)
T 3zwf_A           83 MVSKQPIEIYGPVGLRDFIWRTMELSHT--ELVFHYVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTILLDSEE  160 (368)
T ss_dssp             ----CCEEEEEETTHHHHHHHHHHHTTC--CCSSCEEEEEECCCGGGSCC-------------------CCCEECCBTTT
T ss_pred             ccCCCCeEEEEcHHHHHHHHHHHHhhCc--CCCceEEEEEeecCccccccccccccccccccccCccccccccccccccc
Confidence               3588999999999998876654321  1123345555533                           333322    


Q ss_pred             -------cCCeEEEEEEcCCcCCcceEEEEEecc--cc---chhhcCCC-hHHHHHHHhcCceecc--------------
Q 023022          129 -------RKDLFVKAFKTYHVIQSQGYVVYSVKQ--KL---KQEYLGLP-GDEIKKLKSSGTEITY--------------  181 (288)
Q Consensus       129 -------~~~~~i~~~~~~H~~~~~g~~i~~~~~--~~---~~~~~g~~-~~~l~~l~~~G~~i~~--------------  181 (288)
                             .++++|+++++.|+++|+||+|.+.++  ++   |.+.+|+| ||++++||+ |..++.              
T Consensus       161 ~~~~~~~~~~~~V~a~~~~H~vp~~gy~i~e~~~~g~~~~ek~~~~gip~G~~~~~Lk~-G~~v~~~dG~~i~~~~v~~~  239 (368)
T 3zwf_A          161 NSYLLFDDEQFVVKAFRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKN-GISVVLENGVTISPQDVLKK  239 (368)
T ss_dssp             TBEEEEECSSEEEEEEEEESSSCEEEEEEEECC-----------------------------------------------
T ss_pred             CceeEEeCCCEEEEEEeccCCCceEEEEEEecCCcCccCHHHHHHcCCCchHHHHhcCC-CCeEEecCCEEEEhHHhccc
Confidence                   158999999999999999999998765  34   55689997 899999996 766652              


Q ss_pred             eEeCCeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccCCC
Q 023022          182 TVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH  261 (288)
Q Consensus       182 ~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~~  261 (288)
                      +..+.+++|+|||++. ........++++|+||+||||.+.+  ...+..+.|+++++|.+++++.++++++++||++||
T Consensus       240 ~~~g~~v~~~GDT~~~-~~~~~~~~~~~~Dlli~Eat~~~~~--~~~a~~~~H~t~~~A~~~a~~~~~k~lil~H~s~ry  316 (368)
T 3zwf_A          240 PIVGRKICILGDCSGV-VGDGGVKLCFEADLLIHEATLDDAQ--MDKAKEHGHSTPQMAATFAKLCRAKRLVLTHFSQRY  316 (368)
T ss_dssp             --CCCEEEEECSCSEE-CSSHHHHHTTTCSEEEEECCSCGGG--HHHHHHTTCCCHHHHHHHHHHTTCSEEEEECBCCCC
T ss_pred             cccceEEEEEecCCcc-cchhHHHHhcCCCEEEEecCCChHH--HhhhhcCCCCCHHHHHHHHHHcCCCEEEEEeeCccc
Confidence            1237789999999871 1223345678999999999999876  567788999999999999999999999999999999


Q ss_pred             Chh---------HHHHHHHhCCCcccc-eeeecccC
Q 023022          262 KVD---------EIRRAVDAVPAPLAG-RVFALTEG  287 (288)
Q Consensus       262 ~~~---------~~~~~~~~~~~~~~~-~~~~~~~g  287 (288)
                      +.+         .+.+++++......+ .+.+|.||
T Consensus       317 ~~~~~~~~~~~~~~~~~~~ea~~~f~~~~~~~a~dg  352 (368)
T 3zwf_A          317 KPVALAREGETDGIAELKKQAESVLDLQEVTLAEDF  352 (368)
T ss_dssp             ---------------------------CEEEECCTT
T ss_pred             CccccccccccchHHHHHHHHHHhcCCCceEEecCC
Confidence            832         233444444444433 67788887
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Back     alignment and structure
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A Back     alignment and structure
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Back     alignment and structure
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Back     alignment and structure
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Back     alignment and structure
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} Back     alignment and structure
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Back     alignment and structure
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 288
d2e7ya1280 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Ther 2e-27
d1y44a1307 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Baci 3e-11
d2cbna1305 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Esch 5e-08
d1xtoa_304 d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, P 1e-06
d2dkfa1 431 d.157.1.10 (A:1-431) Putative RNA-degradation prot 2e-04
d2i7ta1 451 d.157.1.10 (A:9-459) Cleavage and polyadenylation 8e-04
d2i7xa1 514 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two 0.002
d2az4a1183 d.157.1.10 (A:56-238) Hypothetical protein EF2904 0.002
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Length = 280 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Thermotoga maritima [TaxId: 2336]

 Score =  105 bits (262), Expect = 2e-27
 Identities = 67/285 (23%), Positives = 110/285 (38%), Gaps = 29/285 (10%)

Query: 22  VEGLSIAGHETCIIFPSLDLAFDIGRCPSRAL-----SQNFLFISHAHMDHIGGLPMYVA 76
           + G S A   T I +    + FD G   S  L     +  ++F++H H+DHI GL   V 
Sbjct: 3   IIGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVN 62

Query: 77  TRGL---YRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRK--- 130
            R      R KP  +  P   +   E    + R       +  +  L  GE   +R    
Sbjct: 63  IRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAGG 122

Query: 131 -DLFVKAFKTYH--VIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPE 187
              +V+ F+T H     S GY ++ V++KLK+E+ GL   EI +L         T    +
Sbjct: 123 FKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYHK 182

Query: 188 VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF 247
              T    S  +  E    +    +L+ E T+          R   H  + E++E  +  
Sbjct: 183 KVLTISGDSLALDPEE---IRGTELLIHECTF----LDARDRRYKNHAAIDEVMESVKAA 235

Query: 248 ENKAILLIHFSARHK------VDEIRRAVDAVPAPLA--GRVFAL 284
             K ++L H S R+       + + R  +  V        +VF +
Sbjct: 236 GVKKVILYHISTRYIRQLKSVIKKYREEMPDVEILYMDPRKVFEM 280
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Length = 307 Back     information, alignment and structure
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Length = 305 Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Length = 304 Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
d2cbna1305 Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 100.0
d1y44a1307 Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId 100.0
d2e7ya1280 Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax 100.0
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus an 100.0
d1xtoa_304 Coenzyme PQQ synthesis protein B, PqqB {Pseudomona 99.9
d2dkfa1 431 Putative RNA-degradation protein TTHA0252 {Thermus 99.86
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 99.81
d2i7xa1 514 Cleavage factor two protein 2, CFT2 {Baker's yeast 99.79
d2i7ta1 451 Cleavage and polyadenylation specificity factor su 99.76
d1vjna_209 Hypothetical protein TM0207 {Thermotoga maritima [ 99.55
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.39
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.39
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.38
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 99.36
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 99.34
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 99.34
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 99.27
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 99.27
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 99.26
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 99.19
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 99.15
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 99.13
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 99.13
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 99.11
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 99.08
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 99.04
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 99.02
d1wraa1305 Teichoic acid phosphorylcholine esterase Pce (LytD 99.01
d2cfua2505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 98.88
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.87
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 98.12
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-36  Score=264.15  Aligned_cols=259  Identities=23%  Similarity=0.245  Sum_probs=198.0

Q ss_pred             eEEEEeee-----cCceeEEEeC------CceEEEeCCCCCccc--------cCcCEEEEecCChhhhCcHHHHHHHhCC
Q 023022           20 YKVEGLSI-----AGHETCIIFP------SLDLAFDIGRCPSRA--------LSQNFLFISHAHMDHIGGLPMYVATRGL   80 (288)
Q Consensus        20 ~~v~g~~~-----~~~~s~~~i~------~~~iLiD~G~~~~~~--------~~i~~I~iTH~H~DH~~gl~~ll~~~~~   80 (288)
                      |+|+|.+.     +.++||++++      +..+|||||++++++        .+|++|||||.|+||++|++.|+..+..
T Consensus         3 l~~LGtg~~~p~~~r~~s~~li~~~~~~~~~~iL~DcG~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~Gl~~ll~~~~~   82 (305)
T d2cbna1           3 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSM   82 (305)
T ss_dssp             EEEEECBSSSCCSSCCBCEEEEECCCSSCCCEEEECCCTTHHHHHHTSCCCTTTEEEEECSCCCHHHHTTHHHHHHHHHH
T ss_pred             EEEEccCCCCCCCCCccCEEEEEEecCCCCcEEEEeCchHHHHHHHHhCCCHHHCcEEEEccccHHHhCchhhhhhhhhc
Confidence            56777543     3467999983      468999999997543        2589999999999999999999875433


Q ss_pred             -CCCCCCEEeCCcchHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEcCCcCCcceEEEEEecccc--
Q 023022           81 -YRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL--  157 (288)
Q Consensus        81 -~~~~~~~i~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~~H~~~~~g~~i~~~~~~~--  157 (288)
                       .+.+++.||+|+...+.++.........  .....++........+.. +.+++.+++..|..++.+|++.+..+..  
T Consensus        83 ~~~~~~l~i~gP~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  159 (305)
T d2cbna1          83 SGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLEIVEIGAGEILDD-GLRKVTAYPLEHPLECYGYRIEEHDAPGAL  159 (305)
T ss_dssp             TTCCSCEEEEESTTHHHHHHHHHHHTTCC--CSSCEEEEECCSEEEEEC-SSEEEEEEECBSSSCCEEEEEEECCCCCCB
T ss_pred             cCCcccccccCChhHHHHHHHHhhhhccc--ccccceeeecccccceec-cceeEEeeeccccccccccccccccCCccc
Confidence             3467899999999999988776654322  123345566655556665 4899999999999999999998765432  


Q ss_pred             ---chhhcCCC-hHHHHHHHhcCceec--------------ceEeCCeEEEecCCCCCccccccccccCCCCEEEEeccc
Q 023022          158 ---KQEYLGLP-GDEIKKLKSSGTEIT--------------YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTY  219 (288)
Q Consensus       158 ---~~~~~g~~-~~~l~~l~~~G~~i~--------------~~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~  219 (288)
                         +....+.+ +++..+++. +..+.              ....+.+++|+||++++   +.....++++|+||+||+|
T Consensus       160 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~~sgDt~~~---~~l~~~~~~~d~LI~E~t~  235 (305)
T d2cbna1         160 NAQALKAAGVPPGPLFQELKA-GKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPC---DAALDLAKGVDVMVHEATL  235 (305)
T ss_dssp             CHHHHHHTTCCSSHHHHHHHH-TCCCEETTTEECCGGGTBCCCCCCCEEEECCSCBSC---STHHHHHTTCSEEEEECCB
T ss_pred             hhhhhhhcCCCCchhhhhcCc-ceEEEEeeceeeeeccccccccccceeecccccCCc---hhHHHHhhccceeeecccc
Confidence               23456665 788888885 22111              12346789999999984   2334568999999999999


Q ss_pred             CCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccCCCChhHHHHHHHhCCCcccceeeecccCC
Q 023022          220 VDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF  288 (288)
Q Consensus       220 ~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  288 (288)
                      .++.  .+.+..++|++++++++++++.++|+++||||++||+.+++.+++++....+.+ +.+|+||.
T Consensus       236 ~~~~--~~~a~~~~H~t~~~~~~la~~~~~k~lvltH~s~~~~~~~~~~~~~e~~~~~~~-~~~a~Dg~  301 (305)
T d2cbna1         236 DITM--EAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFPA-TELANDFT  301 (305)
T ss_dssp             CGGG--HHHHHHTTCCBHHHHHHHHHHHTCSEEEEECBCTTCCHHHHHHHHHHHHTTCSC-EEECCTTC
T ss_pred             chhh--hhcccCCCCCCHHHHHHHHHHcCCCEEEEECCCcCCCchhHHHHHHHHHHHCCC-eEEcCCCC
Confidence            8876  577889999999999999999999999999999999988777766555444444 77899983
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure